Query 009967
Match_columns 521
No_of_seqs 556 out of 3348
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 16:56:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009967.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009967hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.2E-38 7.6E-43 324.9 41.3 418 48-472 90-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.1E-36 1.4E-40 308.0 34.1 403 48-454 123-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-28 6.1E-33 237.3 39.4 372 80-458 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-27 6.2E-32 230.2 38.5 350 115-471 6-367 (388)
5 4g26_A Pentatricopeptide repea 100.0 5.7E-28 1.9E-32 237.9 20.8 183 206-389 27-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 8.3E-28 2.8E-32 236.7 20.1 213 90-355 7-224 (501)
7 2gw1_A Mitochondrial precursor 99.9 2.8E-24 9.6E-29 215.7 35.2 264 205-473 186-479 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.3E-24 4.5E-29 218.1 27.8 396 48-449 12-489 (514)
9 3fp2_A TPR repeat-containing p 99.9 1.9E-23 6.4E-28 211.0 32.0 413 48-473 31-492 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 4.9E-23 1.7E-27 203.1 32.8 329 107-469 25-406 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 1.9E-22 6.4E-27 198.9 31.7 364 72-462 25-444 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.7E-21 6E-26 196.6 29.7 411 24-447 37-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.5E-19 5.2E-24 172.1 36.3 303 142-472 2-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 5.6E-20 1.9E-24 175.1 31.4 312 107-456 2-353 (359)
15 2xm6_A Protein corresponding t 99.9 7.4E-18 2.5E-22 167.8 38.9 366 71-455 37-452 (490)
16 3hym_B Cell division cycle pro 99.8 1.4E-18 4.6E-23 163.5 28.9 251 207-460 58-322 (330)
17 3hym_B Cell division cycle pro 99.8 2.3E-18 7.7E-23 162.0 29.6 264 203-471 20-298 (330)
18 2xm6_A Protein corresponding t 99.8 5E-17 1.7E-21 161.8 39.8 363 91-474 25-434 (490)
19 1b89_A Protein (clathrin heavy 99.8 4.4E-19 1.5E-23 166.7 23.2 288 52-403 13-308 (449)
20 1fch_A Peroxisomal targeting s 99.8 8E-19 2.7E-23 168.0 25.6 258 207-468 66-355 (368)
21 1xi4_A Clathrin heavy chain; a 99.8 7.6E-17 2.6E-21 168.4 39.5 374 48-467 991-1379(1630)
22 2ooe_A Cleavage stimulation fa 99.8 5.4E-17 1.9E-21 163.2 36.4 396 53-473 23-493 (530)
23 3mkr_A Coatomer subunit epsilo 99.8 3.4E-17 1.2E-21 150.6 31.1 269 153-465 9-287 (291)
24 4eqf_A PEX5-related protein; a 99.8 4.1E-18 1.4E-22 162.9 22.2 260 205-468 65-352 (365)
25 1b89_A Protein (clathrin heavy 99.8 1.5E-19 5.1E-24 169.8 11.2 284 155-468 15-307 (449)
26 1fch_A Peroxisomal targeting s 99.8 1.7E-17 5.7E-22 158.8 25.0 287 215-519 35-346 (368)
27 4g1t_A Interferon-induced prot 99.8 2.3E-17 7.8E-22 163.6 26.3 384 73-483 51-470 (472)
28 2ooe_A Cleavage stimulation fa 99.8 1.7E-16 5.8E-21 159.6 31.7 370 72-473 12-455 (530)
29 1xi4_A Clathrin heavy chain; a 99.8 1.6E-15 5.3E-20 158.7 38.6 349 77-468 989-1341(1630)
30 3cv0_A Peroxisome targeting si 99.8 3.7E-17 1.3E-21 153.4 23.7 257 208-469 24-312 (327)
31 3mkr_A Coatomer subunit epsilo 99.8 6E-17 2E-21 148.9 23.3 243 183-473 8-265 (291)
32 4eqf_A PEX5-related protein; a 99.8 8.6E-17 3E-21 153.7 24.5 232 239-473 64-311 (365)
33 4g1t_A Interferon-induced prot 99.7 7.2E-16 2.5E-20 152.7 24.4 372 48-450 57-471 (472)
34 3cv0_A Peroxisome targeting si 99.7 5.3E-16 1.8E-20 145.5 22.1 261 109-402 22-311 (327)
35 2pl2_A Hypothetical conserved 99.7 1.6E-15 5.6E-20 133.1 21.1 195 272-469 2-211 (217)
36 3uq3_A Heat shock protein STI1 99.7 4.9E-15 1.7E-19 133.7 23.8 219 206-472 6-236 (258)
37 3uq3_A Heat shock protein STI1 99.7 2.3E-15 7.7E-20 135.9 21.4 238 174-452 5-256 (258)
38 3e4b_A ALGK; tetratricopeptide 99.7 8.6E-15 3E-19 143.5 22.3 377 79-472 9-421 (452)
39 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.8E-14 6E-19 131.5 22.2 240 218-466 18-269 (275)
40 3u4t_A TPR repeat-containing p 99.6 2.6E-14 8.9E-19 130.2 22.5 246 208-457 6-269 (272)
41 3e4b_A ALGK; tetratricopeptide 99.6 3.4E-14 1.2E-18 139.2 22.5 344 114-475 9-390 (452)
42 1ouv_A Conserved hypothetical 99.6 2.8E-13 9.5E-18 123.5 26.9 223 204-473 5-252 (273)
43 3spa_A Mtrpol, DNA-directed RN 99.6 5E-16 1.7E-20 157.6 8.3 116 275-391 127-250 (1134)
44 2h6f_A Protein farnesyltransfe 99.6 7.1E-14 2.4E-18 132.8 21.8 246 205-456 97-366 (382)
45 3spa_A Mtrpol, DNA-directed RN 99.6 4.7E-16 1.6E-20 157.8 6.6 149 206-391 128-286 (1134)
46 2q7f_A YRRB protein; TPR, prot 99.6 4.7E-14 1.6E-18 126.1 18.3 196 274-472 22-222 (243)
47 2ho1_A Type 4 fimbrial biogene 99.6 4.5E-13 1.6E-17 120.4 24.8 167 277-445 73-245 (252)
48 2ho1_A Type 4 fimbrial biogene 99.6 1.6E-13 5.5E-18 123.4 21.5 197 275-473 37-239 (252)
49 2pl2_A Hypothetical conserved 99.6 1.6E-13 5.6E-18 120.2 20.3 191 205-402 5-210 (217)
50 2q7f_A YRRB protein; TPR, prot 99.6 5.9E-14 2E-18 125.4 17.9 213 204-455 22-239 (243)
51 2vq2_A PILW, putative fimbrial 99.6 3.1E-13 1.1E-17 119.0 22.0 197 274-472 7-211 (225)
52 3u4t_A TPR repeat-containing p 99.6 3.2E-13 1.1E-17 123.0 22.5 228 241-472 4-250 (272)
53 2h6f_A Protein farnesyltransfe 99.6 5.3E-13 1.8E-17 126.8 23.8 224 241-469 98-344 (382)
54 1ouv_A Conserved hypothetical 99.6 7.7E-13 2.6E-17 120.6 24.0 225 174-443 6-256 (273)
55 2vq2_A PILW, putative fimbrial 99.6 1.1E-12 3.8E-17 115.4 24.3 208 204-449 7-222 (225)
56 3sf4_A G-protein-signaling mod 99.6 1.2E-13 4E-18 133.7 19.5 262 208-471 12-335 (406)
57 4a1s_A PINS, partner of inscut 99.6 4.8E-14 1.6E-18 136.9 16.4 263 208-472 51-372 (411)
58 3vtx_A MAMA; tetratricopeptide 99.6 7.1E-13 2.4E-17 112.9 21.5 165 305-472 4-170 (184)
59 3ro2_A PINS homolog, G-protein 99.6 8.6E-14 3E-18 130.6 17.1 263 208-472 8-332 (338)
60 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.5E-14 1.2E-18 129.5 13.5 241 87-364 19-269 (275)
61 4abn_A Tetratricopeptide repea 99.5 1.3E-13 4.5E-18 136.0 16.9 208 256-468 84-317 (474)
62 3sf4_A G-protein-signaling mod 99.5 6.1E-13 2.1E-17 128.6 18.4 95 74-169 10-113 (406)
63 4e6h_A MRNA 3'-END-processing 99.5 8.8E-11 3E-15 119.1 34.0 407 32-444 53-576 (679)
64 4e6h_A MRNA 3'-END-processing 99.5 1.2E-10 4.1E-15 118.1 33.1 401 71-474 64-572 (679)
65 3vtx_A MAMA; tetratricopeptide 99.5 4.2E-12 1.4E-16 108.0 18.0 167 274-443 4-175 (184)
66 3ro2_A PINS homolog, G-protein 99.5 1.1E-12 3.9E-17 122.9 15.8 277 111-440 8-334 (338)
67 4a1s_A PINS, partner of inscut 99.5 1E-12 3.4E-17 127.5 15.6 265 75-371 50-373 (411)
68 2ond_A Cleavage stimulation fa 99.4 3.6E-11 1.2E-15 111.5 25.2 217 222-443 33-275 (308)
69 3ulq_A Response regulator aspa 99.4 1.2E-12 4.3E-17 125.6 15.8 128 343-471 226-367 (383)
70 3ulq_A Response regulator aspa 99.4 2.4E-12 8.3E-17 123.5 16.1 288 153-440 22-370 (383)
71 3nf1_A KLC 1, kinesin light ch 99.4 5.6E-13 1.9E-17 123.8 10.6 236 205-471 27-306 (311)
72 2ond_A Cleavage stimulation fa 99.4 5.3E-11 1.8E-15 110.4 23.5 213 257-474 33-272 (308)
73 3as5_A MAMA; tetratricopeptide 99.4 2E-11 7E-16 103.5 19.0 161 309-472 11-173 (186)
74 1hz4_A MALT regulatory protein 99.4 3.2E-10 1.1E-14 108.3 29.0 263 210-472 19-322 (373)
75 4gyw_A UDP-N-acetylglucosamine 99.4 1.2E-11 4.3E-16 126.8 19.8 162 306-471 9-173 (723)
76 4i17_A Hypothetical protein; T 99.4 2.1E-11 7.3E-16 107.6 18.3 190 274-472 6-209 (228)
77 3q15_A PSP28, response regulat 99.4 1.4E-10 4.7E-15 111.1 24.9 162 308-470 184-363 (378)
78 4i17_A Hypothetical protein; T 99.4 6.5E-11 2.2E-15 104.5 19.8 205 238-453 5-224 (228)
79 4abn_A Tetratricopeptide repea 99.3 2.2E-11 7.5E-16 120.0 17.8 218 89-331 84-317 (474)
80 3nf1_A KLC 1, kinesin light ch 99.3 2.1E-12 7.1E-17 119.9 9.5 237 174-441 27-310 (311)
81 3as5_A MAMA; tetratricopeptide 99.3 1.2E-10 4.1E-15 98.7 19.8 168 275-445 8-180 (186)
82 3q15_A PSP28, response regulat 99.3 5.7E-11 2E-15 113.7 18.9 299 139-438 6-365 (378)
83 1hz4_A MALT regulatory protein 99.3 7.6E-09 2.6E-13 98.6 30.4 268 77-368 18-320 (373)
84 3qky_A Outer membrane assembly 99.2 6E-10 2E-14 100.5 19.5 205 274-518 14-247 (261)
85 1qqe_A Vesicular transport pro 99.2 7.6E-10 2.6E-14 101.6 19.1 174 276-449 78-280 (292)
86 3edt_B KLC 2, kinesin light ch 99.2 3.5E-10 1.2E-14 103.0 15.3 221 251-471 12-280 (283)
87 3qky_A Outer membrane assembly 99.2 1.4E-09 4.9E-14 98.0 17.8 203 238-461 13-250 (261)
88 4gyw_A UDP-N-acetylglucosamine 99.2 4.9E-10 1.7E-14 115.0 16.3 163 274-440 8-176 (723)
89 2yhc_A BAMD, UPF0169 lipoprote 99.2 4.3E-09 1.5E-13 92.5 20.3 183 274-475 3-216 (225)
90 2fo7_A Synthetic consensus TPR 99.2 2.1E-09 7.2E-14 85.5 16.6 127 344-472 4-132 (136)
91 3mv2_B Coatomer subunit epsilo 99.1 4.6E-09 1.6E-13 94.7 19.8 181 259-447 85-291 (310)
92 3mv2_B Coatomer subunit epsilo 99.1 1.6E-08 5.6E-13 91.1 22.5 175 294-473 85-283 (310)
93 3edt_B KLC 2, kinesin light ch 99.1 3.8E-09 1.3E-13 96.0 17.6 164 275-438 85-281 (283)
94 4ga2_A E3 SUMO-protein ligase 99.1 2E-10 6.7E-15 93.9 8.0 141 314-458 5-149 (150)
95 2uy1_A Cleavage stimulation fa 99.1 1.7E-07 5.8E-12 92.3 30.3 204 222-437 196-412 (493)
96 2pzi_A Probable serine/threoni 99.1 7.3E-10 2.5E-14 114.2 13.3 169 286-458 402-583 (681)
97 1qqe_A Vesicular transport pro 99.1 1.4E-08 4.8E-13 93.1 20.5 198 212-410 44-272 (292)
98 4ga2_A E3 SUMO-protein ligase 99.1 3.3E-10 1.1E-14 92.5 8.3 141 347-515 3-146 (150)
99 2fo7_A Synthetic consensus TPR 99.1 9.8E-09 3.4E-13 81.5 16.8 131 308-441 3-135 (136)
100 3rjv_A Putative SEL1 repeat pr 99.1 1.1E-08 3.9E-13 88.7 18.4 172 294-474 5-199 (212)
101 3qou_A Protein YBBN; thioredox 99.1 8.4E-09 2.9E-13 94.3 18.0 176 291-470 102-282 (287)
102 3urz_A Uncharacterized protein 99.0 1.2E-08 4.2E-13 88.3 18.0 134 312-450 60-197 (208)
103 2vsy_A XCC0866; transferase, g 99.0 8.7E-09 3E-13 104.2 17.2 160 288-450 2-169 (568)
104 2r5s_A Uncharacterized protein 99.0 7.6E-09 2.6E-13 87.0 13.5 157 311-471 11-172 (176)
105 3urz_A Uncharacterized protein 99.0 1.9E-08 6.4E-13 87.1 15.3 156 312-472 10-186 (208)
106 3gyz_A Chaperone protein IPGC; 98.9 2E-09 6.8E-14 87.5 8.4 97 377-473 36-134 (151)
107 3qou_A Protein YBBN; thioredox 98.9 7.1E-08 2.4E-12 88.1 19.3 172 194-402 106-280 (287)
108 4gco_A Protein STI-1; structur 98.9 1.5E-08 5.2E-13 79.6 12.9 108 343-452 15-124 (126)
109 2pzi_A Probable serine/threoni 98.9 5.3E-08 1.8E-12 100.4 20.4 169 251-424 402-583 (681)
110 2vsy_A XCC0866; transferase, g 98.9 2.5E-08 8.7E-13 100.8 17.4 146 253-402 2-153 (568)
111 2vgx_A Chaperone SYCD; alterna 98.9 6E-09 2.1E-13 84.7 9.7 97 376-472 20-118 (148)
112 2uy1_A Cleavage stimulation fa 98.9 1.6E-07 5.4E-12 92.5 21.5 354 85-471 6-412 (493)
113 4gco_A Protein STI-1; structur 98.9 2.8E-08 9.7E-13 78.1 13.0 95 378-472 14-110 (126)
114 3u3w_A Transcriptional activat 98.9 2.4E-07 8.2E-12 84.9 21.2 161 311-471 80-265 (293)
115 3dra_A Protein farnesyltransfe 98.9 2.1E-06 7.2E-11 78.2 26.7 225 221-451 49-301 (306)
116 2ifu_A Gamma-SNAP; membrane fu 98.9 6.2E-08 2.1E-12 89.5 16.8 220 217-465 3-254 (307)
117 2yhc_A BAMD, UPF0169 lipoprote 98.9 6.9E-08 2.3E-12 84.7 16.2 184 239-443 3-218 (225)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1E-07 3.5E-12 82.7 17.0 129 308-442 8-154 (213)
119 2xcb_A PCRH, regulatory protei 98.9 2.1E-08 7.2E-13 80.8 11.7 120 377-519 18-139 (142)
120 1a17_A Serine/threonine protei 98.8 8.9E-08 3.1E-12 79.2 15.2 127 343-471 15-145 (166)
121 3rjv_A Putative SEL1 repeat pr 98.8 1.2E-07 4.3E-12 82.1 16.6 171 260-440 6-199 (212)
122 2c2l_A CHIP, carboxy terminus 98.8 1.1E-08 3.7E-13 93.2 10.1 190 274-472 3-199 (281)
123 2r5s_A Uncharacterized protein 98.8 8.4E-08 2.9E-12 80.5 14.8 156 278-437 9-172 (176)
124 3dra_A Protein farnesyltransfe 98.8 9.9E-07 3.4E-11 80.3 22.5 212 256-471 49-286 (306)
125 2qfc_A PLCR protein; TPR, HTH, 98.8 1.4E-07 4.9E-12 86.4 16.6 164 308-471 77-265 (293)
126 1na0_A Designed protein CTPR3; 98.8 2.3E-07 7.8E-12 72.3 14.6 115 341-457 9-125 (125)
127 2vyi_A SGTA protein; chaperone 98.8 1.4E-07 4.9E-12 74.2 13.5 117 341-459 12-130 (131)
128 2e2e_A Formate-dependent nitri 98.8 1.3E-07 4.5E-12 79.3 13.6 118 353-472 22-144 (177)
129 1hh8_A P67PHOX, NCF-2, neutrop 98.8 4.4E-07 1.5E-11 78.6 17.4 131 277-408 8-153 (213)
130 1p5q_A FKBP52, FK506-binding p 98.7 1.6E-07 5.3E-12 87.9 14.9 128 343-470 149-292 (336)
131 2lni_A Stress-induced-phosphop 98.7 1.5E-07 5.1E-12 74.4 12.5 115 342-458 17-133 (133)
132 2ifu_A Gamma-SNAP; membrane fu 98.7 7.4E-08 2.5E-12 89.0 11.4 197 252-470 3-222 (307)
133 3upv_A Heat shock protein STI1 98.7 3E-07 1E-11 72.1 11.8 118 378-515 5-124 (126)
134 4f3v_A ESX-1 secretion system 98.6 7.5E-07 2.6E-11 79.2 15.4 181 287-472 18-237 (282)
135 2kck_A TPR repeat; tetratricop 98.6 2.5E-07 8.5E-12 70.5 10.9 100 376-475 5-109 (112)
136 4f3v_A ESX-1 secretion system 98.6 2.6E-07 8.8E-12 82.2 12.1 136 310-450 106-248 (282)
137 3gyz_A Chaperone protein IPGC; 98.6 4E-07 1.4E-11 73.8 12.0 99 343-443 38-138 (151)
138 2vgx_A Chaperone SYCD; alterna 98.6 2.1E-07 7.1E-12 75.5 10.2 115 329-447 10-127 (148)
139 1elw_A TPR1-domain of HOP; HOP 98.6 1.1E-06 3.9E-11 67.4 14.0 108 343-452 6-115 (118)
140 2qfc_A PLCR protein; TPR, HTH, 98.6 1.6E-06 5.4E-11 79.4 17.1 162 277-438 77-266 (293)
141 2fbn_A 70 kDa peptidylprolyl i 98.6 5.4E-07 1.9E-11 77.1 13.1 96 378-473 89-187 (198)
142 1hxi_A PEX5, peroxisome target 98.6 2.6E-07 8.8E-12 72.0 10.0 94 379-472 19-114 (121)
143 3q49_B STIP1 homology and U bo 98.6 7.5E-07 2.6E-11 70.9 12.7 99 375-473 7-107 (137)
144 3upv_A Heat shock protein STI1 98.6 7.8E-07 2.7E-11 69.7 12.4 111 342-454 5-123 (126)
145 3sz7_A HSC70 cochaperone (SGT) 98.6 5.2E-07 1.8E-11 74.6 11.8 110 340-451 10-121 (164)
146 2lni_A Stress-induced-phosphop 98.6 9.2E-07 3.2E-11 69.7 12.7 98 375-472 14-113 (133)
147 2e2e_A Formate-dependent nitri 98.6 6.7E-07 2.3E-11 74.9 12.4 127 317-446 21-152 (177)
148 3u3w_A Transcriptional activat 98.6 6.5E-06 2.2E-10 75.2 19.9 158 181-368 82-264 (293)
149 3q7a_A Farnesyltransferase alp 98.6 9.4E-05 3.2E-09 68.1 27.1 172 215-392 64-257 (349)
150 1na0_A Designed protein CTPR3; 98.6 2E-06 7E-11 66.7 14.0 96 377-472 9-106 (125)
151 2vyi_A SGTA protein; chaperone 98.5 1.8E-06 6.1E-11 67.7 13.8 97 376-472 11-109 (131)
152 1elw_A TPR1-domain of HOP; HOP 98.5 1.1E-06 3.8E-11 67.5 12.2 97 376-472 3-101 (118)
153 2xcb_A PCRH, regulatory protei 98.5 7.3E-07 2.5E-11 71.6 11.3 108 343-452 20-129 (142)
154 3sz7_A HSC70 cochaperone (SGT) 98.5 1.2E-06 4.1E-11 72.3 12.8 92 379-470 13-106 (164)
155 2dba_A Smooth muscle cell asso 98.5 1.7E-06 6E-11 69.6 13.0 95 377-471 28-127 (148)
156 1a17_A Serine/threonine protei 98.5 1.7E-06 6E-11 71.2 13.2 126 309-437 16-145 (166)
157 3rkv_A Putative peptidylprolyl 98.5 1.1E-06 3.9E-11 72.3 11.8 63 410-472 64-126 (162)
158 3gw4_A Uncharacterized protein 98.5 2.7E-06 9.4E-11 72.7 14.6 131 308-438 28-176 (203)
159 4gcn_A Protein STI-1; structur 98.5 7.2E-07 2.5E-11 70.1 9.7 93 379-471 10-111 (127)
160 3q49_B STIP1 homology and U bo 98.5 2E-06 6.9E-11 68.3 12.1 113 339-453 7-126 (137)
161 3gw4_A Uncharacterized protein 98.5 1.2E-06 4.3E-11 74.9 11.5 48 186-233 4-54 (203)
162 3q7a_A Farnesyltransferase alp 98.5 3.3E-05 1.1E-09 71.1 21.4 214 255-472 69-331 (349)
163 2c2l_A CHIP, carboxy terminus 98.5 4.7E-07 1.6E-11 82.3 9.2 88 146-233 7-100 (281)
164 4gcn_A Protein STI-1; structur 98.5 1.4E-06 4.6E-11 68.5 10.7 104 343-449 10-122 (127)
165 2dba_A Smooth muscle cell asso 98.5 4.8E-06 1.6E-10 67.0 14.3 113 340-455 27-145 (148)
166 2hr2_A Hypothetical protein; a 98.5 1.1E-06 3.9E-11 70.4 10.1 62 411-472 59-131 (159)
167 2fbn_A 70 kDa peptidylprolyl i 98.4 4.4E-07 1.5E-11 77.7 8.3 94 379-472 40-151 (198)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 2.2E-06 7.7E-11 83.7 13.4 96 377-472 317-415 (457)
169 3dss_A Geranylgeranyl transfer 98.4 0.00015 5.1E-09 66.4 24.4 231 216-453 40-319 (331)
170 1wao_1 Serine/threonine protei 98.4 7.3E-07 2.5E-11 87.5 9.8 118 349-468 14-135 (477)
171 2xev_A YBGF; tetratricopeptide 98.4 1.4E-06 4.6E-11 68.5 9.2 89 383-471 8-104 (129)
172 1p5q_A FKBP52, FK506-binding p 98.4 2.3E-06 7.8E-11 79.9 12.2 117 354-472 126-259 (336)
173 3dss_A Geranylgeranyl transfer 98.4 9.8E-05 3.4E-09 67.6 22.6 217 251-471 40-303 (331)
174 2xev_A YBGF; tetratricopeptide 98.3 1.1E-05 3.7E-10 63.2 13.3 106 347-452 8-119 (129)
175 1elr_A TPR2A-domain of HOP; HO 98.3 9.8E-06 3.3E-10 63.4 12.8 109 343-454 6-123 (131)
176 1elr_A TPR2A-domain of HOP; HO 98.3 2.9E-06 1E-10 66.5 9.7 96 377-472 4-108 (131)
177 3k9i_A BH0479 protein; putativ 98.3 7.9E-07 2.7E-11 68.7 5.8 82 390-471 3-89 (117)
178 2kck_A TPR repeat; tetratricop 98.3 3.9E-06 1.3E-10 63.6 9.8 99 343-443 8-111 (112)
179 1ihg_A Cyclophilin 40; ppiase 98.3 4.3E-06 1.5E-10 79.0 11.6 138 307-465 224-363 (370)
180 1hxi_A PEX5, peroxisome target 98.3 5.1E-06 1.7E-10 64.5 10.1 97 345-443 21-119 (121)
181 1wao_1 Serine/threonine protei 98.3 4.6E-06 1.6E-10 81.8 12.0 118 281-401 12-134 (477)
182 3rkv_A Putative peptidylprolyl 98.3 4.6E-06 1.6E-10 68.6 10.1 78 377-454 63-143 (162)
183 3ro3_A PINS homolog, G-protein 98.3 3.2E-06 1.1E-10 69.1 9.1 93 379-471 51-157 (164)
184 4b4t_Q 26S proteasome regulato 98.2 8.1E-05 2.8E-09 72.0 19.3 25 211-235 10-34 (434)
185 4b4t_Q 26S proteasome regulato 98.2 2.7E-05 9.4E-10 75.4 15.8 153 181-333 11-202 (434)
186 2if4_A ATFKBP42; FKBP-like, al 98.2 3.2E-06 1.1E-10 78.9 8.5 148 306-473 179-329 (338)
187 3ma5_A Tetratricopeptide repea 98.1 1.3E-05 4.5E-10 59.6 9.4 66 407-472 5-70 (100)
188 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 1.2E-05 4.2E-10 78.5 11.8 64 409-472 317-380 (457)
189 3n71_A Histone lysine methyltr 98.1 2.9E-05 1E-09 75.7 14.0 123 351-473 319-465 (490)
190 2hr2_A Hypothetical protein; a 98.1 8.8E-06 3E-10 65.3 8.5 107 344-450 14-143 (159)
191 1ihg_A Cyclophilin 40; ppiase 98.1 1.9E-05 6.4E-10 74.6 12.0 113 341-472 223-336 (370)
192 3k9i_A BH0479 protein; putativ 98.1 3.9E-06 1.3E-10 64.7 5.7 94 354-447 3-99 (117)
193 2l6j_A TPR repeat-containing p 98.1 2.5E-06 8.5E-11 64.8 4.2 93 376-468 3-103 (111)
194 2if4_A ATFKBP42; FKBP-like, al 98.1 1.3E-05 4.4E-10 74.8 9.5 152 275-443 179-333 (338)
195 1dce_A Protein (RAB geranylger 98.0 0.00021 7.2E-09 71.4 18.6 168 291-461 45-244 (567)
196 3bee_A Putative YFRE protein; 98.0 4.5E-05 1.5E-09 55.5 9.8 69 406-474 3-74 (93)
197 1na3_A Designed protein CTPR2; 98.0 4E-05 1.4E-09 55.5 9.4 81 377-457 9-91 (91)
198 3ro3_A PINS homolog, G-protein 98.0 3.3E-05 1.1E-09 62.9 9.9 132 206-368 10-156 (164)
199 2l6j_A TPR repeat-containing p 98.0 9.7E-05 3.3E-09 55.7 11.7 65 408-472 3-67 (111)
200 3n71_A Histone lysine methyltr 98.0 2.8E-05 9.5E-10 75.8 10.3 115 386-518 318-450 (490)
201 1zu2_A Mitochondrial import re 98.0 2.8E-05 9.6E-10 62.2 8.2 97 353-473 14-121 (158)
202 2kat_A Uncharacterized protein 97.9 6.7E-05 2.3E-09 57.3 9.3 66 407-472 17-82 (115)
203 1klx_A Cysteine rich protein B 97.8 0.00029 1E-08 55.8 12.2 112 355-474 9-128 (138)
204 1na3_A Designed protein CTPR2; 97.8 0.00028 9.7E-09 50.8 10.8 64 409-472 9-72 (91)
205 3qwp_A SET and MYND domain-con 97.8 9.7E-05 3.3E-09 70.9 10.0 116 384-517 294-427 (429)
206 1dce_A Protein (RAB geranylger 97.7 0.00093 3.2E-08 66.7 16.0 149 320-472 43-221 (567)
207 3qww_A SET and MYND domain-con 97.7 0.0001 3.5E-09 70.6 8.3 103 390-510 311-431 (433)
208 2kat_A Uncharacterized protein 97.6 0.00031 1.1E-08 53.4 9.1 80 360-441 4-85 (115)
209 1klx_A Cysteine rich protein B 97.6 0.0012 4E-08 52.2 12.3 112 320-440 9-128 (138)
210 1zu2_A Mitochondrial import re 97.6 0.00087 3E-08 53.6 11.1 126 317-473 13-148 (158)
211 2kc7_A BFR218_protein; tetratr 97.4 0.00053 1.8E-08 50.4 7.9 64 383-446 6-72 (99)
212 3lvg_A Clathrin heavy chain 1; 97.4 1.8E-06 6.3E-11 80.6 -7.3 250 57-326 40-324 (624)
213 3qww_A SET and MYND domain-con 97.3 0.00081 2.8E-08 64.4 9.6 95 353-447 310-425 (433)
214 3qwp_A SET and MYND domain-con 97.3 0.0027 9.3E-08 60.9 13.2 101 348-448 294-415 (429)
215 3mkq_A Coatomer beta'-subunit; 97.3 0.024 8.1E-07 59.6 21.6 137 284-460 661-800 (814)
216 3ma5_A Tetratricopeptide repea 97.3 0.00085 2.9E-08 49.5 7.5 59 308-367 9-67 (100)
217 1pc2_A Mitochondria fission pr 97.2 0.0018 6.2E-08 51.1 9.2 88 356-445 13-107 (152)
218 1qsa_A Protein (soluble lytic 97.2 0.22 7.5E-06 49.8 26.7 114 320-437 228-347 (618)
219 3ly7_A Transcriptional activat 97.2 0.023 7.9E-07 52.2 17.4 136 304-441 192-342 (372)
220 2kc7_A BFR218_protein; tetratr 97.2 0.0026 9.1E-08 46.5 9.2 52 419-470 10-62 (99)
221 3ly7_A Transcriptional activat 97.1 0.0095 3.3E-07 54.8 14.0 134 338-474 191-341 (372)
222 3u64_A Protein TP_0956; tetrat 96.9 0.0049 1.7E-07 54.3 9.2 85 394-478 180-275 (301)
223 1wy6_A Hypothetical protein ST 96.8 0.097 3.3E-06 39.8 18.4 147 310-475 9-157 (172)
224 3mkq_A Coatomer beta'-subunit; 96.8 0.014 4.9E-07 61.3 14.2 153 284-468 608-761 (814)
225 3lvg_A Clathrin heavy chain 1; 96.6 0.00046 1.6E-08 64.8 1.1 251 30-295 40-324 (624)
226 1pc2_A Mitochondria fission pr 96.6 0.0086 2.9E-07 47.3 8.0 65 407-471 30-99 (152)
227 3mkq_B Coatomer subunit alpha; 96.5 0.24 8.2E-06 40.1 16.3 46 285-332 15-60 (177)
228 2v5f_A Prolyl 4-hydroxylase su 96.5 0.031 1.1E-06 41.3 10.4 71 380-450 8-87 (104)
229 1nzn_A CGI-135 protein, fissio 96.4 0.026 8.8E-07 42.8 9.1 98 347-446 7-111 (126)
230 3mkq_B Coatomer subunit alpha; 96.2 0.2 6.7E-06 40.6 13.8 129 314-469 13-141 (177)
231 3bee_A Putative YFRE protein; 96.0 0.055 1.9E-06 38.9 9.2 68 375-442 4-76 (93)
232 2v5f_A Prolyl 4-hydroxylase su 96.0 0.045 1.5E-06 40.4 8.9 65 408-472 4-75 (104)
233 1y8m_A FIS1; mitochondria, unk 95.9 0.31 1.1E-05 37.6 13.0 71 374-444 36-112 (144)
234 1nzn_A CGI-135 protein, fissio 95.7 0.22 7.5E-06 37.7 11.5 21 382-402 79-99 (126)
235 4h7y_A Dual specificity protei 95.5 0.049 1.7E-06 42.4 7.3 108 340-449 12-134 (161)
236 3u64_A Protein TP_0956; tetrat 95.4 0.02 6.9E-07 50.4 5.7 85 357-441 179-272 (301)
237 3o48_A Mitochondria fission 1 95.4 0.19 6.3E-06 38.3 10.1 65 407-471 38-106 (134)
238 4gns_B Protein CSD3, chitin bi 95.2 0.12 4E-06 52.7 11.0 55 416-470 344-398 (754)
239 4h7y_A Dual specificity protei 94.6 0.34 1.2E-05 37.7 9.6 46 355-402 74-119 (161)
240 4ady_A RPN2, 26S proteasome re 94.3 1.3 4.5E-05 46.1 16.1 13 460-472 646-658 (963)
241 1qsa_A Protein (soluble lytic 93.8 5.9 0.0002 39.6 29.7 389 48-477 78-484 (618)
242 4ady_A RPN2, 26S proteasome re 93.4 5.9 0.0002 41.4 19.1 37 31-69 218-257 (963)
243 2ff4_A Probable regulatory pro 93.4 0.25 8.4E-06 46.5 8.6 68 412-479 174-246 (388)
244 4b4t_P 26S proteasome regulato 92.5 6 0.00021 37.8 17.0 50 254-303 30-84 (445)
245 1wy6_A Hypothetical protein ST 91.7 3.5 0.00012 31.5 13.7 139 215-372 17-155 (172)
246 3txn_A 26S proteasome regulato 91.5 8.9 0.0003 35.7 16.6 55 347-401 105-163 (394)
247 4fhn_B Nucleoporin NUP120; pro 91.5 12 0.0004 40.8 19.6 145 245-397 817-991 (1139)
248 1v54_E Cytochrome C oxidase po 91.4 1.3 4.3E-05 31.7 7.7 63 322-386 26-88 (109)
249 3txn_A 26S proteasome regulato 91.2 9.6 0.00033 35.5 24.5 287 144-474 20-345 (394)
250 3ffl_A Anaphase-promoting comp 91.0 1 3.5E-05 35.8 7.9 30 376-405 121-150 (167)
251 3ffl_A Anaphase-promoting comp 90.0 2.8 9.7E-05 33.3 9.7 121 335-469 12-148 (167)
252 4gns_B Protein CSD3, chitin bi 89.9 1.1 3.8E-05 45.7 9.2 121 79-201 254-398 (754)
253 3o48_A Mitochondria fission 1 89.0 3.2 0.00011 31.5 8.9 75 372-446 35-115 (134)
254 4b4t_P 26S proteasome regulato 88.5 17 0.0006 34.5 23.4 184 219-403 30-244 (445)
255 3lpz_A GET4 (YOR164C homolog); 88.0 15 0.00051 33.2 20.1 44 173-216 135-178 (336)
256 3lpz_A GET4 (YOR164C homolog); 87.8 15 0.00052 33.1 19.7 164 179-368 40-214 (336)
257 2wpv_A GET4, UPF0363 protein Y 87.6 15 0.00052 32.8 19.1 165 178-368 37-215 (312)
258 2y69_E Cytochrome C oxidase su 87.5 3.1 0.00011 31.5 7.7 62 323-386 70-131 (152)
259 2ff4_A Probable regulatory pro 87.3 3.5 0.00012 38.6 10.3 71 78-149 176-251 (388)
260 3ltm_A Alpha-REP4; protein eng 86.3 13 0.00045 30.8 18.8 17 142-158 32-48 (211)
261 1v54_E Cytochrome C oxidase po 86.0 5.6 0.00019 28.5 8.0 62 221-283 26-87 (109)
262 3ltm_A Alpha-REP4; protein eng 86.0 14 0.00046 30.7 18.6 154 59-220 19-172 (211)
263 3esl_A Checkpoint serine/threo 86.0 11 0.00039 31.0 11.2 54 422-475 92-147 (202)
264 3ltj_A Alpharep-4; protein eng 85.9 13 0.00045 30.5 17.2 17 304-320 150-166 (201)
265 4fhn_B Nucleoporin NUP120; pro 84.0 37 0.0013 37.0 17.6 144 311-471 817-966 (1139)
266 2wpv_A GET4, UPF0363 protein Y 82.9 26 0.00088 31.4 22.4 165 278-471 36-216 (312)
267 2uwj_G Type III export protein 82.6 11 0.00037 26.8 9.0 85 256-345 22-106 (115)
268 3ltj_A Alpharep-4; protein eng 82.4 19 0.00065 29.5 18.7 150 63-220 18-167 (201)
269 2p58_C Putative type III secre 81.8 12 0.0004 26.7 9.7 85 256-345 23-107 (116)
270 1zbp_A Hypothetical protein VP 81.0 5 0.00017 34.8 7.4 56 386-441 6-63 (273)
271 2uwj_G Type III export protein 80.9 13 0.00044 26.5 9.4 56 123-180 21-76 (115)
272 2p58_C Putative type III secre 80.5 13 0.00046 26.4 10.2 74 122-199 21-94 (116)
273 1zbp_A Hypothetical protein VP 80.3 28 0.00097 30.2 12.7 122 315-444 6-135 (273)
274 1y8m_A FIS1; mitochondria, unk 79.8 19 0.00065 27.8 11.4 67 406-472 36-106 (144)
275 4a1g_A Mitotic checkpoint seri 77.4 24 0.00081 27.6 10.4 49 428-476 84-134 (152)
276 4b4t_R RPN7, 26S proteasome re 76.8 6.8 0.00023 37.2 7.9 97 276-372 132-239 (429)
277 2y69_E Cytochrome C oxidase su 76.6 21 0.00072 27.1 8.6 61 222-283 70-130 (152)
278 3ygs_P Procaspase 9; apoptosis 73.4 5.6 0.00019 28.5 4.8 64 31-94 23-89 (97)
279 2wvi_A Mitotic checkpoint seri 73.4 33 0.0011 27.2 10.1 49 428-476 79-129 (164)
280 4b4t_R RPN7, 26S proteasome re 68.8 20 0.00068 34.0 9.0 96 343-438 133-237 (429)
281 1oyz_A Hypothetical protein YI 67.1 62 0.0021 28.0 19.1 49 70-122 34-82 (280)
282 1wdy_A 2-5A-dependent ribonucl 66.4 61 0.0021 27.8 11.5 23 48-70 8-30 (285)
283 3eu9_A Huntingtin-interacting 64.5 28 0.00094 29.2 8.5 43 49-92 13-58 (240)
284 3bqo_A Telomeric repeat-bindin 61.6 45 0.0015 27.2 8.1 65 393-457 94-165 (211)
285 2p1h_A APAF-1, apoptotic prote 60.4 16 0.00055 25.7 5.1 62 31-92 24-86 (94)
286 1wdy_A 2-5A-dependent ribonucl 58.1 89 0.003 26.7 12.9 15 286-300 156-170 (285)
287 2zu6_B Programmed cell death p 57.9 91 0.0031 27.7 10.6 195 278-474 6-233 (307)
288 1oyz_A Hypothetical protein YI 56.2 99 0.0034 26.7 22.7 21 418-439 244-264 (280)
289 4b4t_S RPN3, 26S proteasome re 54.4 34 0.0012 33.0 7.6 25 343-367 233-257 (523)
290 3jxi_A Vanilloid receptor-rela 53.1 27 0.00091 30.0 6.4 118 80-198 9-161 (260)
291 2d2s_A Exocyst complex compone 52.5 86 0.0029 26.6 9.2 86 313-402 25-116 (235)
292 3esl_A Checkpoint serine/threo 52.0 99 0.0034 25.4 10.4 17 221-237 95-111 (202)
293 2nsz_A Programmed cell death p 51.4 69 0.0023 24.1 7.6 63 178-240 11-78 (129)
294 2nsz_A Programmed cell death p 49.3 82 0.0028 23.7 8.8 66 278-343 10-80 (129)
295 4gq2_M Nucleoporin NUP120; bet 49.0 1.8E+02 0.0062 30.8 12.9 104 347-456 816-949 (950)
296 2ion_A PDCD4, programmed cell 48.4 73 0.0025 24.8 7.5 66 278-343 12-82 (152)
297 3kea_A K1L; tropism, ANK repea 47.7 1.4E+02 0.0047 25.9 11.1 137 55-200 9-152 (285)
298 3hra_A Ankyrin repeat family p 47.0 79 0.0027 25.4 8.2 21 49-69 9-29 (201)
299 3kae_A CDC27, possible protein 45.3 1.2E+02 0.004 24.3 15.6 22 419-440 218-239 (242)
300 2d2s_A Exocyst complex compone 45.2 1.4E+02 0.0048 25.3 10.1 88 210-300 23-116 (235)
301 4aez_C MAD3, mitotic spindle c 45.1 1E+02 0.0035 25.8 8.1 47 427-473 132-180 (223)
302 3mv2_A Coatomer subunit alpha; 45.0 1.7E+02 0.0058 26.1 10.8 59 400-472 196-256 (325)
303 4a1g_A Mitotic checkpoint seri 44.3 1.1E+02 0.0038 23.8 9.4 50 224-273 84-134 (152)
304 3ljn_A Hypothetical protein; a 43.6 97 0.0033 28.0 9.0 90 48-142 23-115 (364)
305 2ion_A PDCD4, programmed cell 42.9 61 0.0021 25.3 6.2 62 178-239 13-79 (152)
306 3kea_A K1L; tropism, ANK repea 42.2 1.1E+02 0.0036 26.7 8.7 50 247-300 35-84 (285)
307 1wgl_A TOLL-interacting protei 38.4 63 0.0022 20.4 4.6 47 431-478 12-58 (59)
308 3b7b_A Euchromatic histone-lys 37.6 1.6E+02 0.0056 24.2 9.0 16 352-367 218-233 (237)
309 1k1a_A B-cell lymphoma 3-encod 37.5 1.7E+02 0.0059 24.1 9.9 24 83-106 16-39 (241)
310 1n11_A Ankyrin; clathrin, BAND 36.9 2.3E+02 0.0078 26.3 10.7 112 48-169 17-136 (437)
311 1k1a_A B-cell lymphoma 3-encod 36.6 1.5E+02 0.005 24.5 8.5 19 48-66 12-30 (241)
312 4b4t_S RPN3, 26S proteasome re 36.2 3E+02 0.01 26.5 11.4 61 275-335 231-299 (523)
313 3crd_A Raidd; caspase recruitm 35.3 67 0.0023 22.8 5.0 67 34-103 26-93 (100)
314 2r9g_A AAA ATPase, central reg 35.1 1.9E+02 0.0064 23.7 8.7 62 209-271 15-84 (204)
315 3qil_A Clathrin heavy chain 1; 34.6 18 0.00061 26.8 1.7 72 51-130 15-86 (125)
316 4gq2_M Nucleoporin NUP120; bet 33.9 4.5E+02 0.015 27.8 13.3 47 242-288 899-949 (950)
317 2pnn_A Transient receptor pote 33.2 1.2E+02 0.0042 25.9 7.6 62 72-134 10-80 (273)
318 1ya0_A SMG-7 transcript varian 32.4 1.7E+02 0.0057 28.2 8.7 43 423-465 166-208 (497)
319 2crb_A Nuclear receptor bindin 31.5 70 0.0024 22.3 4.1 24 445-468 17-40 (97)
320 3eu9_A Huntingtin-interacting 30.6 1.2E+02 0.0039 25.1 6.8 55 48-107 45-103 (240)
321 3bge_A Predicted ATPase; struc 30.5 2E+02 0.0068 23.5 7.4 47 208-254 7-56 (201)
322 3b7b_A Euchromatic histone-lys 30.0 2.1E+02 0.007 23.5 8.3 111 153-268 118-235 (237)
323 2fe3_A Peroxide operon regulat 29.9 83 0.0028 24.2 5.1 62 97-159 11-72 (145)
324 2etb_A Transient receptor pote 29.8 1.1E+02 0.0038 25.8 6.6 118 80-198 6-157 (256)
325 3hra_A Ankyrin repeat family p 29.4 2.1E+02 0.0072 22.6 9.3 14 287-300 115-128 (201)
326 2o03_A Probable zinc uptake re 29.3 87 0.003 23.5 5.1 36 122-157 24-59 (131)
327 2fu4_A Ferric uptake regulatio 29.1 1.3E+02 0.0044 20.0 6.6 62 97-159 6-68 (83)
328 1bpo_A Protein (clathrin); cla 28.3 3.9E+02 0.013 25.4 14.3 114 55-170 342-456 (494)
329 3ctd_A Putative ATPase, AAA fa 28.2 2.5E+02 0.0087 23.2 7.8 50 206-255 33-85 (213)
330 1n11_A Ankyrin; clathrin, BAND 27.2 3.7E+02 0.013 24.7 13.4 292 48-365 50-365 (437)
331 2wvi_A Mitotic checkpoint seri 26.9 2.3E+02 0.008 22.3 10.0 50 224-273 79-129 (164)
332 4ets_A Ferric uptake regulatio 26.3 1.8E+02 0.0063 22.7 6.6 70 89-159 13-85 (162)
333 2w57_A Ferric uptake regulatio 26.2 2.2E+02 0.0076 21.9 7.0 63 97-160 6-69 (150)
334 2fe3_A Peroxide operon regulat 25.2 1.9E+02 0.0064 22.1 6.4 59 231-290 13-71 (145)
335 3ljn_A Hypothetical protein; a 24.7 2.3E+02 0.008 25.4 8.2 81 386-468 179-266 (364)
336 3ygs_P Procaspase 9; apoptosis 24.1 1.1E+02 0.0038 21.5 4.5 38 289-326 51-88 (97)
337 3bu8_A Telomeric repeat-bindin 24.0 3.1E+02 0.011 22.8 9.6 47 357-403 88-140 (235)
338 3re2_A Predicted protein; meni 23.6 3.1E+02 0.011 24.9 7.9 43 428-470 276-323 (472)
339 3d9h_A CDNA FLJ77766, highly s 23.3 2.6E+02 0.009 24.0 7.9 112 48-170 18-149 (285)
340 2cos_A Serine/threonine protei 22.6 48 0.0016 20.4 1.8 43 29-72 7-52 (54)
341 2xig_A Ferric uptake regulatio 22.5 1.2E+02 0.0041 23.4 4.8 63 97-160 16-78 (150)
342 3aji_A 26S proteasome non-ATPa 22.3 3.1E+02 0.011 22.2 8.5 20 48-67 9-28 (231)
343 3mwm_A ZUR, putative metal upt 22.3 82 0.0028 24.0 3.7 47 113-159 18-64 (139)
344 2b7e_A PRE-mRNA processing pro 21.9 1.1E+02 0.0038 19.3 3.5 30 221-250 2-31 (59)
345 1ug3_A EIF4GI, eukaryotic prot 21.1 3.8E+02 0.013 24.1 8.5 147 310-468 15-166 (339)
346 2xig_A Ferric uptake regulatio 20.9 2.9E+02 0.0098 21.2 7.1 59 231-290 18-76 (150)
347 2fu4_A Ferric uptake regulatio 20.7 1.9E+02 0.0066 19.1 6.4 58 231-289 8-66 (83)
348 3bqo_A Telomeric repeat-bindin 20.6 3.3E+02 0.011 22.3 6.8 45 58-102 94-146 (211)
349 2cfu_A SDSA1; SDS-hydrolase, l 20.2 2.5E+02 0.0087 28.1 7.8 44 415-458 455-498 (658)
350 2ijq_A Hypothetical protein; s 20.0 3.2E+02 0.011 21.4 6.6 60 240-300 33-100 (161)
351 1mzb_A Ferric uptake regulatio 20.0 2.8E+02 0.0096 20.7 7.0 61 98-159 8-69 (136)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-38 Score=324.90 Aligned_cols=418 Identities=11% Similarity=0.015 Sum_probs=352.0
Q ss_pred hhhhcccCCChhHHHHHhccCC--CCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChH
Q 009967 48 SVSCGSESDKFSSVHQVFDEVP--DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 125 (521)
+++.|.+.|++++|..+|+++. .|+..+|..++..|.+.|++++|..+|+++.. .+++..+++.++.+|.+.|+++
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 167 (597)
T 2xpi_A 90 WRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFCLVKLYDWQ 167 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHHHHHHhhHH
Confidence 7778888888888888887764 36667777888888888888888888887754 3577778888888888888888
Q ss_pred HHHHHHHHHHHh---------------CCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--CC-chhHHHH-------
Q 009967 126 LGKQLHAWATKV---------------GLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN--PN-VVSYTTM------- 180 (521)
Q Consensus 126 ~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l------- 180 (521)
+|.++|+++... +.+++..+|+.++.+|.+.|++++|.+.|+++.+ |+ ...+..+
T Consensus 168 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 247 (597)
T 2xpi_A 168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLT 247 (597)
T ss_dssp HHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSC
T ss_pred HHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhccc
Confidence 888888742211 2233577888888888888888888888887764 32 2222222
Q ss_pred -------------------------------HHHHHcCCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHH
Q 009967 181 -------------------------------ICGLLKRERFEDALKLFQEMPH--RNVVSWNAMIGGYSQTGRNEEAVNL 227 (521)
Q Consensus 181 -------------------------------i~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~ 227 (521)
+..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|.++
T Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (597)
T 2xpi_A 248 ADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAI 327 (597)
T ss_dssp HHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3345566788888888888877 7889999999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---C
Q 009967 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---R 304 (521)
Q Consensus 228 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~ 304 (521)
|+++...+ +.+..++..++.++...|+++.|..+++.+.+..+. +..+++.++.+|.+.|++++|.++|+++.+ .
T Consensus 328 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 405 (597)
T 2xpi_A 328 TTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405 (597)
T ss_dssp HHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 99999865 347788999999999999999999999999976543 788999999999999999999999998864 5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHH
Q 009967 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMV 384 (521)
Q Consensus 305 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 384 (521)
+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|...|++++|.++|+++....+ .++.+|..++
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~ 482 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ--YDPLLLNELG 482 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHH
Confidence 67799999999999999999999999999864 45778999999999999999999999999986654 4678899999
Q ss_pred HHHHhcCCHHHHHHHHhhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967 385 DLLSRSGRFKEAKEFLYDL-------PFDPG--IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV 455 (521)
Q Consensus 385 ~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 455 (521)
.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|++++|++.|+++.+.+|+++.+|..++.+|.+
T Consensus 483 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH 562 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999999886 34677 77999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhC
Q 009967 456 AGKWDNVSNIRREMKEK 472 (521)
Q Consensus 456 ~g~~~~A~~~~~~m~~~ 472 (521)
.|++++|.++++++.+.
T Consensus 563 ~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 563 KKIPGLAITHLHESLAI 579 (597)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhc
Confidence 99999999999998864
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.1e-36 Score=308.03 Aligned_cols=403 Identities=11% Similarity=0.021 Sum_probs=354.9
Q ss_pred hhhhcccCCChhHHHHHhccCC--CCCcccHHHHHHHHHhcCChHHHHHHHHHhHHC---------------CCCCChhh
Q 009967 48 SVSCGSESDKFSSVHQVFDEVP--DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLL---------------NIRPSEFT 110 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---------------~~~p~~~~ 110 (521)
++.+|.+.|++++|..+|+++. .++..+|+.++..|.+.|++++|+++|+++... +.+++..+
T Consensus 123 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (597)
T 2xpi_A 123 LAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASM 202 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHH
Confidence 8999999999999999999884 578899999999999999999999999954321 22345789
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHH--------------------------------------HHHH
Q 009967 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSA--------------------------------------ILDL 152 (521)
Q Consensus 111 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------------------------------------l~~~ 152 (521)
|+.++.+|.+.|++++|.++|+++.+.+ +.+...+.. ++..
T Consensus 203 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 281 (597)
T 2xpi_A 203 CYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK 281 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999875 223333332 2556
Q ss_pred HHcCCCHHHHHHHhhcCCC--CCchhHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHH
Q 009967 153 YIKLSSIEEATRVFEDTHN--PNVVSYTTMICGLLKRERFEDALKLFQEMPH---RNVVSWNAMIGGYSQTGRNEEAVNL 227 (521)
Q Consensus 153 ~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 227 (521)
|.+.|++++|.++|+++.+ ++..+|..++..|.+.|++++|.++|+++.+ .+..+|+.++.++.+.|++++|..+
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLI 361 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHH
T ss_pred HcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6678999999999999988 7889999999999999999999999999864 4678899999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---C
Q 009967 228 FIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---R 304 (521)
Q Consensus 228 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~ 304 (521)
++++.... +.+..++..+...|.+.|++++|..+++.+.+..+. +..+++.++.+|.+.|++++|.++|+++.+ .
T Consensus 362 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (597)
T 2xpi_A 362 SNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439 (597)
T ss_dssp HHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99998653 456788999999999999999999999999987654 788999999999999999999999998864 5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhC---CCCCC--hhH
Q 009967 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED---PGMLK--PEH 379 (521)
Q Consensus 305 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~ 379 (521)
+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.... +..|+ ..+
T Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 77899999999999999999999999998854 4478899999999999999999999999997442 55677 679
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 009967 380 YACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS 454 (521)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 454 (521)
|..++.+|.+.|++++|.++++++. . +.+..+|..++.+|...|++++|.+.|+++++.+|+++.++..++.+|.
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999999853 2 4478899999999999999999999999999999999999999988764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.8e-28 Score=237.27 Aligned_cols=372 Identities=12% Similarity=0.085 Sum_probs=284.6
Q ss_pred HHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCH
Q 009967 80 IGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI 159 (521)
Q Consensus 80 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 159 (521)
...+.+.|++++|...++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+...|..+..+|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 445666777777777777776643 2334445555555667777777777777776653 55666777777777777777
Q ss_pred HHHHHHhhcCCC--CC-chhHHHHHHHHHcCCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009967 160 EEATRVFEDTHN--PN-VVSYTTMICGLLKRERFEDALKLFQEMPH--R-NVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233 (521)
Q Consensus 160 ~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 233 (521)
++|...|+++.. |+ ..+|..+..++.+.|++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++..
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777777654 33 34567777777777777777777776653 3 345666777777778888888888888776
Q ss_pred CCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHH
Q 009967 234 EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWN 310 (521)
Q Consensus 234 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 310 (521)
.. +.+..++..+...+...|+++.|...++.+.+..+. +...+..+..++...|++++|...|++..+ .+..++.
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 43 223466777777778888888888888888776654 677788888899999999999999987764 3567888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhc
Q 009967 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS 390 (521)
Q Consensus 311 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 390 (521)
.+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...|+++....+ .+..++..+..++.+.
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP--THADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHc
Confidence 99999999999999999999998853 23466888899999999999999999999876654 5677899999999999
Q ss_pred CCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 009967 391 GRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458 (521)
Q Consensus 391 g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 458 (521)
|++++|.+.++++. ..| +..++..+...+...|++++|+..|+++++..|+++.+|..++..+...|+
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999998853 344 467889999999999999999999999999999999999999998877664
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.8e-27 Score=230.15 Aligned_cols=350 Identities=13% Similarity=0.087 Sum_probs=307.2
Q ss_pred HHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC---CCchhHHHHHHHHHcCCCHH
Q 009967 115 IPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN---PNVVSYTTMICGLLKRERFE 191 (521)
Q Consensus 115 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 191 (521)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++...+ .+..+|..+...+.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 445667899999999999998865 55667778888899999999999999988765 45678999999999999999
Q ss_pred HHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhhcchHHHHHHHHHHH
Q 009967 192 DALKLFQEMPH--R-NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH-STLPCAIIAAANIAALGMGKSFHACAV 267 (521)
Q Consensus 192 ~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 267 (521)
+|+..|+++.+ | +..+|..+..++.+.|++++|.+.|+++...+ |+. ..+..+...+...|+++.|...+..+.
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999998764 3 56789999999999999999999999999854 654 455677788888999999999999999
Q ss_pred HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 009967 268 KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL 344 (521)
Q Consensus 268 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 344 (521)
+..+. +..++..+..++.+.|++++|...|+++.+ .+...|..+...+...|++++|...+++..... +.+..++
T Consensus 163 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 163 ETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 88654 678899999999999999999999999874 345688999999999999999999999988753 2356788
Q ss_pred HHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhc
Q 009967 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIH 422 (521)
Q Consensus 345 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 422 (521)
..+..++...|++++|...|+++....+ .++.++..+..++.+.|++++|.+.++++. .+++..++..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQP--HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCS--SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 9999999999999999999999975544 356789999999999999999999999853 256788999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 423 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 471 (521)
|++++|+..++++++..|+++.++..++.+|.+.|++++|...++++.+
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999875
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=5.7e-28 Score=237.91 Aligned_cols=183 Identities=13% Similarity=0.129 Sum_probs=153.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhc---------chHHHHHHHHHHHHcCCCCChh
Q 009967 206 VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIA---------ALGMGKSFHACAVKFLGKLDVF 276 (521)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~ 276 (521)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|+..+ .++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3577788888888888888888888888888888888888888887654 3677888888888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009967 277 VGNSLISFYAKCGSMEDSLLVFDKLTE----RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACN 352 (521)
Q Consensus 277 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 352 (521)
+|++++.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 888888888888888888888888863 7888888888888888888888888888888888888888888888888
Q ss_pred hhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh
Q 009967 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR 389 (521)
Q Consensus 353 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (521)
+.|++++|.+++++|. ..+..|+..||+.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhc
Confidence 8888888888888885 77788888888888887765
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=8.3e-28 Score=236.75 Aligned_cols=213 Identities=13% Similarity=0.038 Sum_probs=173.6
Q ss_pred HHHHHHHHHhHHCCCCCCh-hhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhc
Q 009967 90 EEAIYLFSRMLLLNIRPSE-FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFED 168 (521)
Q Consensus 90 ~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 168 (521)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 3455667777777766554 457888999999999999999999999999999999999999999887654221
Q ss_pred CCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 009967 169 THNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248 (521)
Q Consensus 169 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 248 (521)
.+.+..++|.++|++|...|+.||..||+++|.
T Consensus 81 -----------------------------------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~ 113 (501)
T 4g26_A 81 -----------------------------------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGAR 113 (501)
T ss_dssp -----------------------------------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred -----------------------------------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 123456788889999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHH
Q 009967 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE----RNIVTWNAVICGYAQNGRGEE 324 (521)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~ 324 (521)
+|++.|+++.|..++++|.+.|+.||..+|++++.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|+.++
T Consensus 114 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~ 193 (501)
T 4g26_A 114 LAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADK 193 (501)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999863 899999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc
Q 009967 325 AIEFFERMRINGIRPNGVTLLGLLWACNHTG 355 (521)
Q Consensus 325 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 355 (521)
|.+++++|.+.|..|+..||+.++..|+..+
T Consensus 194 A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 194 VYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999887643
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.8e-24 Score=215.73 Aligned_cols=264 Identities=13% Similarity=-0.040 Sum_probs=222.7
Q ss_pred hhHHHHHHHHHHh---cCChHHHHHHHHHHHH-----CCCCC--------ChhhHHHHHHHHHhhcchHHHHHHHHHHHH
Q 009967 205 VVSWNAMIGGYSQ---TGRNEEAVNLFIEMLR-----EGLVP--------NHSTLPCAIIAAANIAALGMGKSFHACAVK 268 (521)
Q Consensus 205 ~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~~p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 268 (521)
...+......+.. .|++++|...|+++.. ....| +..++..+..++...|+++.|...++.+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4455555555555 8999999999999987 32122 235667788889999999999999999999
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 009967 269 FLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLL 345 (521)
Q Consensus 269 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 345 (521)
..+. ...+..+..++...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+..++.
T Consensus 266 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 342 (514)
T 2gw1_A 266 LFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYI 342 (514)
T ss_dssp HCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHH
T ss_pred hCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHH
Confidence 8766 88888999999999999999999998865 456789999999999999999999999998854 33566888
Q ss_pred HHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCC----HHHHHHHHH
Q 009967 346 GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP----FDPG----IGFWKALLG 417 (521)
Q Consensus 346 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~ 417 (521)
.+...+...|++++|...++++....+ .++..+..+..+|.+.|++++|...++++. ..++ ...+..+..
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 420 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRKFP--EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT 420 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHHST--TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcc--cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 888999999999999999999976654 356788899999999999999999998752 1222 448888999
Q ss_pred HHHh---cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967 418 GCQI---HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 418 ~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 473 (521)
.+.. .|++++|+..++++++..|+++.++..++.+|.+.|++++|...+++..+..
T Consensus 421 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 421 LLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 9999 9999999999999999999999999999999999999999999999987653
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.3e-24 Score=218.14 Aligned_cols=396 Identities=10% Similarity=-0.028 Sum_probs=314.9
Q ss_pred hhhhcccCCChhHHHHHhccCC--CCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChH
Q 009967 48 SVSCGSESDKFSSVHQVFDEVP--DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLN 125 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 125 (521)
+...+.+.|++++|++.|+++. .|+...|..+...+.+.|++++|+..|+++.+.+ +.+...+..+..++...|+++
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 90 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFA 90 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHH
Confidence 4467778899999999998765 4788889999999999999999999999998865 455678888899999999999
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHh--------------------------------------h
Q 009967 126 LGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVF--------------------------------------E 167 (521)
Q Consensus 126 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~--------------------------------------~ 167 (521)
+|...|+.+.+.+ +++......++..+........+.+.+ .
T Consensus 91 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
T 2gw1_A 91 DAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG 169 (514)
T ss_dssp HHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence 9999999998876 334333333443333322211111111 1
Q ss_pred cCCC---------C-CchhHHHHHHHHHc---CCCHHHHHHHHhhCCC----------------C-ChhHHHHHHHHHHh
Q 009967 168 DTHN---------P-NVVSYTTMICGLLK---RERFEDALKLFQEMPH----------------R-NVVSWNAMIGGYSQ 217 (521)
Q Consensus 168 ~~~~---------~-~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~----------------~-~~~~~~~l~~~~~~ 217 (521)
.... | +...+......+.. .|++++|+..|+++.+ + +..++..+...+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 1110 1 13344444444554 8999999999988654 1 34678889999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 009967 218 TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLV 297 (521)
Q Consensus 218 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 297 (521)
.|++++|...|+++...+ |+...+..+..++...|+++.|...++.+.+..+. +..++..+..++...|++++|...
T Consensus 250 ~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKD 326 (514)
T ss_dssp SSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred CCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999999865 55778888999999999999999999999987654 677889999999999999999999
Q ss_pred HhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCC
Q 009967 298 FDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM 374 (521)
Q Consensus 298 ~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 374 (521)
|+++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++....+..
T Consensus 327 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 327 FDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 998863 456789999999999999999999999998753 3356788888999999999999999999987555433
Q ss_pred CC----hhHHHHHHHHHHh---cCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 009967 375 LK----PEHYACMVDLLSR---SGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSS 445 (521)
Q Consensus 375 ~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 445 (521)
++ ...+..+..++.. .|++++|...+++.. . +.+..++..+...+...|++++|...|+++++.+|+++..
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence 33 3489999999999 999999999998853 2 4457788999999999999999999999999999988887
Q ss_pred HHHH
Q 009967 446 YVML 449 (521)
Q Consensus 446 ~~~l 449 (521)
+..+
T Consensus 486 ~~~~ 489 (514)
T 2gw1_A 486 LQAI 489 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1.9e-23 Score=211.02 Aligned_cols=413 Identities=12% Similarity=0.055 Sum_probs=282.1
Q ss_pred hhhhcccCCChhHHHHHhccCC---CCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh
Q 009967 48 SVSCGSESDKFSSVHQVFDEVP---DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 124 (521)
+...+.+.|++++|++.|++.. +.+...|..+...+.+.|++++|++.|+++.+.+ +.+...+..+..++...|++
T Consensus 31 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 31 RGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNF 109 (537)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCH
Confidence 3445555666666666665543 2244555556666666666666666666665543 33445555555555566666
Q ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC------CCchhHHHHHHHHHcCCCHHHHHHHHh
Q 009967 125 NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN------PNVVSYTTMICGLLKRERFEDALKLFQ 198 (521)
Q Consensus 125 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~ 198 (521)
++|...|+ ... ..|+.. ...+..+...+....|...++++.. +........+..+....+.+.+...+.
T Consensus 110 ~~A~~~~~-~~~--~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 110 TDAMFDLS-VLS--LNGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HHHHHHHH-HHh--cCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 66666654 221 112211 1122333334444555555555543 111122333444555566666666655
Q ss_pred hCCCCChh---HHHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCh--------hhHHHHHHHHHhhcchHHH
Q 009967 199 EMPHRNVV---SWNAMIGGYSQ--------TGRNEEAVNLFIEMLREGLVPNH--------STLPCAIIAAANIAALGMG 259 (521)
Q Consensus 199 ~~~~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~--------~~~~~ll~~~~~~~~~~~a 259 (521)
.....+.. ....+...+.. .|++++|..+|+++.+.. |+. .++..+...+...|+++.|
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 55543322 33333333322 247899999999988754 542 2455666778888999999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009967 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRING 336 (521)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 336 (521)
...+..+.+..+. ...+..+..++...|++++|...|+++.+ .+..+|..+...+...|++++|...++++.+..
T Consensus 263 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 263 QVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 9999999987654 77888899999999999999999998864 456789999999999999999999999998853
Q ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--------CCCC
Q 009967 337 IRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--------FDPG 408 (521)
Q Consensus 337 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~ 408 (521)
+.+...+..+..++...|++++|...++++....+ .+...+..+..++...|++++|.+.+++.. ....
T Consensus 341 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 341 -PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP--TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp -TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 23456888888999999999999999999986654 456688899999999999999999998742 1122
Q ss_pred HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967 409 IGFWKALLGGCQIH----------SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 409 ~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 473 (521)
...+..+...+... |++++|+..|+++++..|+++.++..++.+|.+.|++++|...+++..+..
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 23345556667777 999999999999999999999999999999999999999999999987654
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=4.9e-23 Score=203.13 Aligned_cols=329 Identities=11% Similarity=0.017 Sum_probs=229.2
Q ss_pred ChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHc
Q 009967 107 SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186 (521)
Q Consensus 107 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 186 (521)
+...+..+...+...|++++|..+|+.+.+.. +.+...+..+..+|...|++++|...|+++.+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------- 89 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL-------------- 89 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------
Confidence 34445555555555555555555555555542 334555555555555555555555555554320
Q ss_pred CCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----hhHHHH------------HHHH
Q 009967 187 RERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH----STLPCA------------IIAA 250 (521)
Q Consensus 187 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l------------l~~~ 250 (521)
...+..++..++.+|.+.|++++|...|+++...+ |+. ..+..+ ...+
T Consensus 90 --------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 153 (450)
T 2y4t_A 90 --------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNA 153 (450)
T ss_dssp --------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01234455555555555666666666665555432 332 222222 3346
Q ss_pred HhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHH
Q 009967 251 ANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIE 327 (521)
Q Consensus 251 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~ 327 (521)
...|+++.|...++.+.+..+. +..++..+..+|.+.|++++|.+.|+++.+ .+..+|..++..|...|++++|..
T Consensus 154 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 232 (450)
T 2y4t_A 154 FGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 6677777777777777766543 677788888888889999999888888764 567788889999999999999999
Q ss_pred HHHHHHHCCCCCCH-HHHHHH------------HHHHHhhccHHHHHHHHHHchHhCCCCCC--hhHHHHHHHHHHhcCC
Q 009967 328 FFERMRINGIRPNG-VTLLGL------------LWACNHTGLVEKGYSYFSQAKLEDPGMLK--PEHYACMVDLLSRSGR 392 (521)
Q Consensus 328 ~~~~m~~~~~~p~~-~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 392 (521)
.|+++... .|+. ..+..+ ...+...|++++|...|+++....+..+. ...+..++.++.+.|+
T Consensus 233 ~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 233 EVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCC
Confidence 99998864 3443 344333 77889999999999999999865543222 3478889999999999
Q ss_pred HHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH------------HHhcC-
Q 009967 393 FKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA------------LSVAG- 457 (521)
Q Consensus 393 ~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g- 457 (521)
+++|...++++. . +.+...|..++.+|...|++++|...++++++..|+++.++..++.+ |...|
T Consensus 311 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 999999999853 3 44678999999999999999999999999999999999999999844 44445
Q ss_pred ----ChHHHHHHHHHH
Q 009967 458 ----KWDNVSNIRREM 469 (521)
Q Consensus 458 ----~~~~A~~~~~~m 469 (521)
+.+++.+.++++
T Consensus 391 ~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKL 406 (450)
T ss_dssp STTCCTTHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHH
Confidence 556777777763
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.9e-22 Score=198.93 Aligned_cols=364 Identities=11% Similarity=0.022 Sum_probs=247.2
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 009967 72 NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILD 151 (521)
Q Consensus 72 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 151 (521)
+...|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.+ +.+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 56788999999999999999999999999764 5578889999999999999999999999999976 556888999999
Q ss_pred HHHcCCCHHHHHHHhhcCCC--CC-c---hhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 009967 152 LYIKLSSIEEATRVFEDTHN--PN-V---VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAV 225 (521)
Q Consensus 152 ~~~~~g~~~~a~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 225 (521)
+|...|++++|...|+++.+ |+ . ..+..++..+. ...+..+...+...|++++|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDE-------------------MQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH-------------------HHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999876 33 2 45555544321 112233344455566666666
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--
Q 009967 226 NLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE-- 303 (521)
Q Consensus 226 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 303 (521)
..|+++.... +.+...+..+..++...|+++.|...++.+.+..+. +..++..+..+|...|++++|...|+++.+
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6666655532 223445555556666666666666666665554332 456666666666666777777666666643
Q ss_pred C-ChhHHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhhccHHHHHHHHH
Q 009967 304 R-NIVTWNAV------------ICGYAQNGRGEEAIEFFERMRINGIRPN-----GVTLLGLLWACNHTGLVEKGYSYFS 365 (521)
Q Consensus 304 ~-~~~~~~~l------------i~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~ 365 (521)
| +...+..+ ...+...|++++|...|+++.+. .|+ ...+..+..++.+.|++++|...++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2 22333333 67777788888888888887763 344 3356677777788888888888888
Q ss_pred HchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHH------------HHhcC-----CHH
Q 009967 366 QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG-IGFWKALLGG------------CQIHS-----NVE 426 (521)
Q Consensus 366 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~------------~~~~g-----~~~ 426 (521)
++....+ .+...|..+..+|...|++++|...+++. ...|+ ...+..+..+ |...| +.+
T Consensus 320 ~a~~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ 397 (450)
T 2y4t_A 320 EVLQMEP--DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397 (450)
T ss_dssp HHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT
T ss_pred HHHHhCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHH
Confidence 7764443 35667778888888888888888888764 33444 4455555422 33334 667
Q ss_pred HHHHHHHH-HHhcCCCCc----------hHHHHHHHHHHhcCChHHH
Q 009967 427 LGEFAARR-ILALDPEDV----------SSYVMLSNALSVAGKWDNV 462 (521)
Q Consensus 427 ~A~~~~~~-~~~~~p~~~----------~~~~~l~~~~~~~g~~~~A 462 (521)
++.+.+++ ++...|++. ..+..+..+|...|+.+.+
T Consensus 398 ~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 398 EIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 78888886 666777532 2455566666666655443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.7e-21 Score=196.57 Aligned_cols=411 Identities=9% Similarity=-0.031 Sum_probs=307.4
Q ss_pred CCCCccchHHHHHHHhhcCCCchh----hhhhcccCCChhHHHHHhccCC---CCCcccHHHHHHHHHhcCChHHHHHHH
Q 009967 24 APNYLIETQKASVQKLETPAIRTD----SVSCGSESDKFSSVHQVFDEVP---DLNVVSATTIIGRFAKQHHYEEAIYLF 96 (521)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~g~~~~~----l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~ 96 (521)
..+....+...+..++...--.+. +..+|.+.|++++|++.|++.. +.+..+|..+...+...|++++|+..|
T Consensus 37 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 116 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 116 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345566666666666653301222 8899999999999999999864 345678899999999999999999999
Q ss_pred HHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHh------CCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 009967 97 SRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKV------GLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170 (521)
Q Consensus 97 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 170 (521)
+.+. . .|+... ..+..+...+....+...++.+.+. ...|+. ..+..+....+.+.+...+....
T Consensus 117 ~~~~-~--~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 187 (537)
T 3fp2_A 117 SVLS-L--NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGIFDSHLEVSSVNTSS 187 (537)
T ss_dssp HHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHTSCHHHHHHTSCCCC
T ss_pred HHHh-c--CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHhcChHHHHHHHhhcc
Confidence 7443 2 233221 1222333445567788888887553 122333 33445667788888888887776
Q ss_pred CCCch---hHHHHHHHHHcC--------CCHHHHHHHHhhCCC--CC--------hhHHHHHHHHHHhcCChHHHHHHHH
Q 009967 171 NPNVV---SYTTMICGLLKR--------ERFEDALKLFQEMPH--RN--------VVSWNAMIGGYSQTGRNEEAVNLFI 229 (521)
Q Consensus 171 ~~~~~---~~~~li~~~~~~--------g~~~~a~~~~~~~~~--~~--------~~~~~~l~~~~~~~~~~~~a~~~~~ 229 (521)
..+.. ....+...+... |++++|..+|+++.+ |+ ..++..+...+...|++++|...|+
T Consensus 188 ~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 188 NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 64333 333333333322 478999999998876 32 2357777888999999999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCh
Q 009967 230 EMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNI 306 (521)
Q Consensus 230 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~ 306 (521)
++.... |+...+..+...+...|+++.|...+..+.+..+. +..++..+..++...|++++|...|+++.+ .+.
T Consensus 268 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 344 (537)
T 3fp2_A 268 ESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV 344 (537)
T ss_dssp HHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS
T ss_pred HHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Confidence 999854 77788888999999999999999999999988765 678899999999999999999999998874 456
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCC----ChhHHHH
Q 009967 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML----KPEHYAC 382 (521)
Q Consensus 307 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~ 382 (521)
..|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++....+..+ ....+..
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 423 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHH
Confidence 789999999999999999999999998863 34566888889999999999999999999865433222 2223555
Q ss_pred HHHHHHhc----------CCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 009967 383 MVDLLSRS----------GRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYV 447 (521)
Q Consensus 383 l~~~~~~~----------g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 447 (521)
+..++.+. |++++|...+++.. . +.+...+..+...+...|++++|.+.|+++++..|+++....
T Consensus 424 ~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 66778888 99999999999853 2 445778999999999999999999999999999998776544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=1.5e-19 Score=172.06 Aligned_cols=303 Identities=13% Similarity=0.082 Sum_probs=208.5
Q ss_pred cHHHHHHHHHHHHcCCCHHHHHHHhhcCCC---CCchhHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhHHHHHHHHH
Q 009967 142 NVFVGSAILDLYIKLSSIEEATRVFEDTHN---PNVVSYTTMICGLLKRERFEDALKLFQEMPH---RNVVSWNAMIGGY 215 (521)
Q Consensus 142 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 215 (521)
+...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..|+++.+ .+...|..+...+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 344566666677777777777777766643 2344555666666666666666666665543 2445566666666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC---Chh-hHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 009967 216 SQTGRNEEAVNLFIEMLREGLVP---NHS-TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291 (521)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~~~~p---~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 291 (521)
...|++++|...|+++.... | +.. .+..+... .. ...+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCH
Confidence 66666666666666665532 3 111 11111000 00 01122335677888888
Q ss_pred HHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHch
Q 009967 292 EDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK 368 (521)
Q Consensus 292 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 368 (521)
++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888764 456678888888888889999998888888753 3456778888888888899999998888887
Q ss_pred HhCCCCCChhHHH------------HHHHHHHhcCCHHHHHHHHhhCC-CCCC-HH----HHHHHHHHHHhcCCHHHHHH
Q 009967 369 LEDPGMLKPEHYA------------CMVDLLSRSGRFKEAKEFLYDLP-FDPG-IG----FWKALLGGCQIHSNVELGEF 430 (521)
Q Consensus 369 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~----~~~~l~~~~~~~g~~~~A~~ 430 (521)
...+. +...+. .+...+.+.|++++|...+++.. ..|+ .. .+..+...+...|++++|+.
T Consensus 216 ~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLDQD--HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHCTT--CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhCcc--chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 55542 222222 23667889999999999998742 2333 22 34556778889999999999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 431 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
.++++++.+|+++.++..++.++...|++++|...+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998753
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=5.6e-20 Score=175.11 Aligned_cols=312 Identities=10% Similarity=-0.009 Sum_probs=238.8
Q ss_pred ChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC--C-CchhHHHHHHH
Q 009967 107 SEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN--P-NVVSYTTMICG 183 (521)
Q Consensus 107 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~ 183 (521)
+...+..+...+...|++++|...|+.+.+.. +.+...+..+..++...|++++|...|+++.+ | +...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34567778888999999999999999999875 56788999999999999999999999999875 4 56788999999
Q ss_pred HHcCCCHHHHHHHHhhCCC--C----ChhHHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 009967 184 LLKRERFEDALKLFQEMPH--R----NVVSWNAM------------IGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245 (521)
Q Consensus 184 ~~~~g~~~~a~~~~~~~~~--~----~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 245 (521)
+...|++++|...|++..+ | +...+..+ ...+...|++++|...++++..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------ 148 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE------------ 148 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH------------
Confidence 9999999999999999865 3 23344444 3444555555555555555544
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCCh
Q 009967 246 AIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRG 322 (521)
Q Consensus 246 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~ 322 (521)
..+. +...+..+..++...|++++|...++++.+ .+..++..+...+...|++
T Consensus 149 -----------------------~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 149 -----------------------VCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp -----------------------HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCH
T ss_pred -----------------------hCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3322 556667777777788888888888777654 3556777788888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHH------------HHHHHHHhhccHHHHHHHHHHchHhCCCCCCh--hHHHHHHHHHH
Q 009967 323 EEAIEFFERMRINGIRPNGVTLL------------GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP--EHYACMVDLLS 388 (521)
Q Consensus 323 ~~A~~~~~~m~~~~~~p~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 388 (521)
++|...+++..+.. +.+...+. .+...+...|++++|...++++....+..+.. ..+..+..++.
T Consensus 205 ~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 205 ELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 88888888877643 22222222 23556888999999999999987655432221 23556888999
Q ss_pred hcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 009967 389 RSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA 456 (521)
Q Consensus 389 ~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 456 (521)
..|++++|...+++.. . +.+...+..+...+...|++++|...|+++++.+|+++.++..+..+....
T Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999999999998853 2 346779999999999999999999999999999999999988888876554
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=7.4e-18 Score=167.80 Aligned_cols=366 Identities=10% Similarity=-0.029 Sum_probs=284.3
Q ss_pred CCcccHHHHHHHHHh----cCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcC----CCChHHHHHHHHHHHHhCCCCc
Q 009967 71 LNVVSATTIIGRFAK----QHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTA----LEDLNLGKQLHAWATKVGLQSN 142 (521)
Q Consensus 71 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 142 (521)
.+...+..+...|.. .+++++|+..|++..+.| +...+..+...|.. .+++++|.+.|+...+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 455666667777776 778888888888877754 45566666666665 778888888888887754 4
Q ss_pred HHHHHHHHHHHHc----CCCHHHHHHHhhcCCC-CCchhHHHHHHHHHc----CCCHHHHHHHHhhCCC-CChhHHHHHH
Q 009967 143 VFVGSAILDLYIK----LSSIEEATRVFEDTHN-PNVVSYTTMICGLLK----RERFEDALKLFQEMPH-RNVVSWNAMI 212 (521)
Q Consensus 143 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~ 212 (521)
...+..+...|.. .+++++|...|++..+ .+...+..+...|.. .++.++|++.|++..+ .+..++..+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg 190 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5556667777777 6788888888877655 455667777777776 7788888888887654 4677888888
Q ss_pred HHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----hcchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 009967 213 GGYSQ----TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAAN----IAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284 (521)
Q Consensus 213 ~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 284 (521)
..|.. .+++++|.++|++..+.| +...+..+...+.. .++.+.|...++...+.+ +...+..+..+
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 264 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYI 264 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHH
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 88887 788999999999888764 45566666667765 778899999999888765 55677778888
Q ss_pred HHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh
Q 009967 285 YAK----CGSMEDSLLVFDKLTE-RNIVTWNAVICGYAQN-----GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354 (521)
Q Consensus 285 ~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 354 (521)
|.. .++.++|...|++..+ .+...+..+...|... +++++|...|++..+.| +...+..+...+...
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRL 341 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHS
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Confidence 887 8999999999999876 4667788888888887 89999999999998875 456677777777665
Q ss_pred c---cHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cC
Q 009967 355 G---LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR----SGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI----HS 423 (521)
Q Consensus 355 ~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g 423 (521)
| +.++|.++|++.. ..+ ++..+..|..+|.. .+++++|.+.+++.....+...+..|...|.. .+
T Consensus 342 g~~~~~~~A~~~~~~a~-~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAA-AKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp CCHHHHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred CCcccHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCC
Confidence 5 8899999999986 433 67788889999988 89999999999986434567788888888887 89
Q ss_pred CHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHh
Q 009967 424 NVELGEFAARRILALDPE---DVSSYVMLSNALSV 455 (521)
Q Consensus 424 ~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 455 (521)
|.++|...|+++.+.+|+ ++.+...++..+..
T Consensus 418 d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 418 DYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 999999999999999854 67777777666554
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.4e-18 Score=163.53 Aligned_cols=251 Identities=10% Similarity=0.006 Sum_probs=163.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhc-chHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 009967 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIA-ALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285 (521)
Q Consensus 207 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 285 (521)
.+..++.++...|++++|...++++.... +.+...+..+...+...| +++.|...++.+.+..+. +...+..+..++
T Consensus 58 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~ 135 (330)
T 3hym_B 58 CLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSF 135 (330)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence 34444445555555555555555555432 123334444445555555 555555555555544332 455666677777
Q ss_pred HhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHH
Q 009967 286 AKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362 (521)
Q Consensus 286 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 362 (521)
...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 136 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 214 (330)
T 3hym_B 136 AVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEK 214 (330)
T ss_dssp HHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHH
Confidence 777777777777776653 334566667777777888888888888777643 3345677777777778888888888
Q ss_pred HHHHchHhCCC-------CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009967 363 YFSQAKLEDPG-------MLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAAR 433 (521)
Q Consensus 363 ~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 433 (521)
.++++....+- .....++..+..+|...|++++|...+++.. . +.+...+..+...+...|++++|...++
T Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFH 294 (330)
T ss_dssp HHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 88777643211 2334577788888888888888888887742 2 3456677888888888888888888888
Q ss_pred HHHhcCCCCchHHHHHHHHH-HhcCChH
Q 009967 434 RILALDPEDVSSYVMLSNAL-SVAGKWD 460 (521)
Q Consensus 434 ~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 460 (521)
++++..|+++.++..++.++ ...|+.+
T Consensus 295 ~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 295 TALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 88888888888888888887 4455543
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.3e-18 Score=162.00 Aligned_cols=264 Identities=15% Similarity=0.087 Sum_probs=228.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 009967 203 RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282 (521)
Q Consensus 203 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 282 (521)
.+...+..++..+...|++++|.++|+++.... +.+...+..++.++...|+++.|..+++.+.+..+. +...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 466678888899999999999999999998864 334556677888899999999999999999997655 678888999
Q ss_pred HHHHhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHH
Q 009967 283 SFYAKCG-SMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358 (521)
Q Consensus 283 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 358 (521)
..+...| ++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999999875 456789999999999999999999999998854 234567777888999999999
Q ss_pred HHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C----------CCCHHHHHHHHHHHHhcCCHHH
Q 009967 359 KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F----------DPGIGFWKALLGGCQIHSNVEL 427 (521)
Q Consensus 359 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~~~~~~~~~l~~~~~~~g~~~~ 427 (521)
+|...++++....+ .+...+..+...+...|++++|...+++.. . +.....+..+...+...|++++
T Consensus 177 ~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSIAP--EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCC--CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999974443 456789999999999999999999998742 0 3345688999999999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967 428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 428 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 471 (521)
|+..++++++..|+++.++..++.++...|++++|...+++..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999998653
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=5e-17 Score=161.77 Aligned_cols=363 Identities=11% Similarity=0.011 Sum_probs=303.8
Q ss_pred HHHHHHHHhHHCCCCCChhhHHHHHHHHcC----CCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHc----CCCHHHH
Q 009967 91 EAIYLFSRMLLLNIRPSEFTFGSVIPSSTA----LEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIK----LSSIEEA 162 (521)
Q Consensus 91 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 162 (521)
.++..++...+.| +...+..+...|.. .+++++|...|+...+.| +...+..|...|.. .+++++|
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3455666655543 56666666666665 899999999999999864 56677888889988 8999999
Q ss_pred HHHhhcCCC-CCchhHHHHHHHHHc----CCCHHHHHHHHhhCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHH
Q 009967 163 TRVFEDTHN-PNVVSYTTMICGLLK----RERFEDALKLFQEMPH-RNVVSWNAMIGGYSQ----TGRNEEAVNLFIEML 232 (521)
Q Consensus 163 ~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~ 232 (521)
...|++..+ .+...+..+...|.. .+++++|+..|++..+ .+..++..+...|.. .+++++|++.|++..
T Consensus 99 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 99 VIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 999998866 466778888888888 8899999999998765 467788889999987 889999999999998
Q ss_pred HCCCCCChhhHHHHHHHHHh----hcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhcCC-
Q 009967 233 REGLVPNHSTLPCAIIAAAN----IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK----CGSMEDSLLVFDKLTE- 303 (521)
Q Consensus 233 ~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~- 303 (521)
+.| +...+..+...+.. .++.+.|...+....+.+ +...+..+...|.. .+++++|...|++..+
T Consensus 179 ~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 179 EQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 864 56777778888877 899999999999999876 56778888888886 8899999999999876
Q ss_pred CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh-----ccHHHHHHHHHHchHhCCCC
Q 009967 304 RNIVTWNAVICGYAQ----NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT-----GLVEKGYSYFSQAKLEDPGM 374 (521)
Q Consensus 304 ~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~ 374 (521)
.+...+..+...|.. .+++++|...|++..+.| +...+..+...+... +++++|...|++.. ..+
T Consensus 253 ~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~-~~~-- 326 (490)
T 2xm6_A 253 GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA-EQG-- 326 (490)
T ss_dssp TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH-HTT--
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH-hcC--
Confidence 566778888888888 899999999999998765 556777777777776 89999999999986 443
Q ss_pred CChhHHHHHHHHHHhcC---CHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHH
Q 009967 375 LKPEHYACMVDLLSRSG---RFKEAKEFLYDLPFDPGIGFWKALLGGCQI----HSNVELGEFAARRILALDPEDVSSYV 447 (521)
Q Consensus 375 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ 447 (521)
++..+..+..+|...| ++++|.+.+++.....+...+..+...|.. .+++++|+..|+++.+.+ ++.++.
T Consensus 327 -~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~ 403 (490)
T 2xm6_A 327 -DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQV 403 (490)
T ss_dssp -CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred -CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHH
Confidence 5567888888888766 789999999886435678889999999988 899999999999999864 688999
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 009967 448 MLSNALSV----AGKWDNVSNIRREMKEKGM 474 (521)
Q Consensus 448 ~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 474 (521)
.++.+|.. .+++++|...|++..+.|.
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99999998 8999999999999998774
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=4.4e-19 Score=166.67 Aligned_cols=288 Identities=11% Similarity=0.069 Sum_probs=105.6
Q ss_pred cccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHH
Q 009967 52 GSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLH 131 (521)
Q Consensus 52 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 131 (521)
.-+.|++++|.++++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.++
T Consensus 13 l~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 34678899999999999766 49999999999999999999999753 67779999999999999999999988
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHH
Q 009967 132 AWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAM 211 (521)
Q Consensus 132 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 211 (521)
+...+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|..++..|...|++++|...|..+ ..|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 877763 45578889999999999999998888853 77779999999999999999999999987 478889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 009967 212 IGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM 291 (521)
Q Consensus 212 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 291 (521)
+.++.+.|++++|.+.++++ .++.+|..++.+| ...|++
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aC-----------------------------------v~~~ef 193 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC-----------------------------------VDGKEF 193 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHH-----------------------------------HHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHH-----------------------------------HHcCcH
Confidence 99999999999998888877 2444554444444 445555
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hccHHHHHHHHHHchH
Q 009967 292 EDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH--TGLVEKGYSYFSQAKL 369 (521)
Q Consensus 292 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~ 369 (521)
+.|......+. .++.-...++..|.+.|.+++|..+++...... +-....|+.+.-++++ .++..+..+.|..
T Consensus 194 ~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--- 268 (449)
T 1b89_A 194 RLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--- 268 (449)
T ss_dssp HHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---
T ss_pred HHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---
Confidence 55544443332 222223345566666666666666666655432 2233344444433332 3333333333321
Q ss_pred hCCCCC------ChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 009967 370 EDPGML------KPEHYACMVDLLSRSGRFKEAKEFLYDL 403 (521)
Q Consensus 370 ~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 403 (521)
.-+++| +...|..++..|...++++.|...+-+-
T Consensus 269 ~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 269 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 222222 2345777777888888888777665543
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=8e-19 Score=167.97 Aligned_cols=258 Identities=13% Similarity=-0.031 Sum_probs=183.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 009967 207 SWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYA 286 (521)
Q Consensus 207 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 286 (521)
.+..+...+...|++++|...|+++.+.. +.+...+..+..++...|+++.|...++.+.+..+. +..++..+..++.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 34455555555555555555555555432 123344445555555555555555555555554432 4555666666666
Q ss_pred hcCCHHHHHHHHhhcCC--CC-hhHHHH---------------HHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHH
Q 009967 287 KCGSMEDSLLVFDKLTE--RN-IVTWNA---------------VICGYAQNGRGEEAIEFFERMRINGIR-PNGVTLLGL 347 (521)
Q Consensus 287 ~~g~~~~A~~~~~~~~~--~~-~~~~~~---------------li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~l 347 (521)
..|++++|.+.|+++.+ |+ ...+.. .+..+...|++++|...++++.+.... ++..++..+
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 66666666666665543 11 111110 133334889999999999999885311 147788899
Q ss_pred HHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCH
Q 009967 348 LWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNV 425 (521)
Q Consensus 348 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~ 425 (521)
...+...|++++|...++++....+ .+..++..+..++.+.|++++|...+++.. . +.+...+..+...+...|++
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVRP--NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH 301 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999875554 456789999999999999999999998853 2 44577899999999999999
Q ss_pred HHHHHHHHHHHhcCCCC-----------chHHHHHHHHHHhcCChHHHHHHHHH
Q 009967 426 ELGEFAARRILALDPED-----------VSSYVMLSNALSVAGKWDNVSNIRRE 468 (521)
Q Consensus 426 ~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (521)
++|...|+++++..|++ +.+|..++.+|...|++++|..++++
T Consensus 302 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 99999999999988877 78999999999999999999998774
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=7.6e-17 Score=168.41 Aligned_cols=374 Identities=10% Similarity=0.067 Sum_probs=292.7
Q ss_pred hhhhcccCCChhHHHHHhccCC-CCC-----cccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCC
Q 009967 48 SVSCGSESDKFSSVHQVFDEVP-DLN-----VVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTAL 121 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~-~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 121 (521)
.++.|...|.+.+|.++++++. .++ ...-+.++....+. +..+..+..++.... + ...+...+...
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISN 1062 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhC
Confidence 8889999999999999998865 222 24556677766666 556666665554321 1 33366678889
Q ss_pred CChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCC
Q 009967 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMP 201 (521)
Q Consensus 122 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 201 (521)
|.+++|..+|+... ......+.++ -..|++++|.++.++.. +..+|..+..++...|++++|++.|.+.
T Consensus 1063 glyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred CCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 99999999998852 1222223332 27789999999999774 4678899999999999999999999775
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHH
Q 009967 202 HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSL 281 (521)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 281 (521)
.|...|..++.++.+.|++++|.+.|....+.. +++...+.+..+|++.++++....+.+ .++...+..+
T Consensus 1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~i 1201 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQV 1201 (1630)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHHH
Confidence 678888999999999999999999999877754 444445568899999988886554431 3456677789
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHH
Q 009967 282 ISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361 (521)
Q Consensus 282 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 361 (521)
...|...|++++|..+|..+ ..|..+...+.+.|++++|.+.+++. .+..+|..+..+|...|++..|.
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~ 1270 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ 1270 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999996 58999999999999999999999976 35689999999999999999998
Q ss_pred HHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHh--cCCHHHHHHHHHHHHh
Q 009967 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG-IGFWKALLGGCQI--HSNVELGEFAARRILA 437 (521)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~ 437 (521)
.....+. .++..+..++..|.+.|.+++|+.+++.. ..+|. ...|+.+...+.+ .++..++.++|..-..
T Consensus 1271 ~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1271 MCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 8765432 56677889999999999999999999874 33443 3467666666655 4678888888887777
Q ss_pred cCC-----CCchHHHHHHHHHHhcCChHHHHHHHH
Q 009967 438 LDP-----EDVSSYVMLSNALSVAGKWDNVSNIRR 467 (521)
Q Consensus 438 ~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~ 467 (521)
+.| .+...|..+...|.+.|+++.|..++-
T Consensus 1345 i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1345 IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 666 588899999999999999999986443
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=5.4e-17 Score=163.21 Aligned_cols=396 Identities=10% Similarity=0.021 Sum_probs=248.9
Q ss_pred ccCCChhHHHHHhccCCC--C-CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHH-cCCCChHHHH
Q 009967 53 SESDKFSSVHQVFDEVPD--L-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSS-TALEDLNLGK 128 (521)
Q Consensus 53 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~ 128 (521)
.+.|++++|+.+|+++.. | +...|...+..+.+.|++++|..+|+++.+. .|+...|...+... ...|+.+.|.
T Consensus 23 ~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~ 100 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYK 100 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHH
T ss_pred HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHH
Confidence 455666666666665432 2 3445666666666666666666666666653 24555554444322 2334544444
Q ss_pred H----HHHHHHHh-CCCC-cHHHHHHHHHHHHc---------CCCHHHHHHHhhcCCC-CCc---hhHHHHHHHHHcCCC
Q 009967 129 Q----LHAWATKV-GLQS-NVFVGSAILDLYIK---------LSSIEEATRVFEDTHN-PNV---VSYTTMICGLLKRER 189 (521)
Q Consensus 129 ~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~-~~~---~~~~~li~~~~~~g~ 189 (521)
+ +|+...+. |..| +...|...+..... .|+++.|..+|++..+ |.. ..|..........|.
T Consensus 101 ~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~ 180 (530)
T 2ooe_A 101 EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI 180 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch
Confidence 3 55544432 3322 34455555554433 4556666666655544 221 111111110000000
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH------HCC---CCCCh--------hhHHHHHHHHHh
Q 009967 190 FEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEML------REG---LVPNH--------STLPCAIIAAAN 252 (521)
Q Consensus 190 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~------~~~---~~p~~--------~~~~~ll~~~~~ 252 (521)
.+...++. .+.+++..|..+++... +.. ++|+. ..|...+.....
T Consensus 181 ----------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~ 242 (530)
T 2ooe_A 181 ----------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS 242 (530)
T ss_dssp ----------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHH
T ss_pred ----------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHc
Confidence 00000110 12345666776666532 111 23331 233333322221
Q ss_pred h----cch----HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCCHH-------HHHHHHhhcCC---C-Ch
Q 009967 253 I----AAL----GMGKSFHACAVKFLGKLDVFVGNSLISFYAK-------CGSME-------DSLLVFDKLTE---R-NI 306 (521)
Q Consensus 253 ~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~ 306 (521)
. ++. ..+..+++.++...+. +...|..++..+.+ .|+++ +|..+|++..+ | +.
T Consensus 243 ~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~ 321 (530)
T 2ooe_A 243 NPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 321 (530)
T ss_dssp CSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH
T ss_pred CCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH
Confidence 1 122 3667788888887544 67888888888775 78877 89999999874 3 46
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHH
Q 009967 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG--VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMV 384 (521)
Q Consensus 307 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 384 (521)
..|..++..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|..+|+++.+..+ .+...|...+
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~--~~~~~~~~~a 397 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAA 397 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT--CCTHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC--CchHHHHHHH
Confidence 78999999999999999999999999984 4643 4788888888899999999999999974433 2233343333
Q ss_pred HH-HHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch----HHHHHHHHHHhcC
Q 009967 385 DL-LSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS----SYVMLSNALSVAG 457 (521)
Q Consensus 385 ~~-~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g 457 (521)
.. +...|+.++|..+|++. ...| +...|..++..+...|+.++|..+|++++...|.++. +|..++......|
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 22 34689999999999974 3334 5779999999999999999999999999998776655 8888899999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 009967 458 KWDNVSNIRREMKEKG 473 (521)
Q Consensus 458 ~~~~A~~~~~~m~~~g 473 (521)
+.+.+..+.+++.+.-
T Consensus 478 ~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 478 DLASILKVEKRRFTAF 493 (530)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHC
Confidence 9999999999987653
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=3.4e-17 Score=150.56 Aligned_cols=269 Identities=8% Similarity=-0.024 Sum_probs=195.7
Q ss_pred HHcCCCHHHHHHHhhcCCCCC--c--hhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 009967 153 YIKLSSIEEATRVFEDTHNPN--V--VSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLF 228 (521)
Q Consensus 153 ~~~~g~~~~a~~~~~~~~~~~--~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 228 (521)
....|++..|+..++.....+ . .....+.++|...|+++.|+..++....++..++..+...+...++.++|++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l 88 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAEL 88 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 334566666666666554422 1 233445566666666666666655543345556666666666666677777777
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhH
Q 009967 229 IEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308 (521)
Q Consensus 229 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 308 (521)
+++...+..|+ +...+..+..++.+.|++++|.+.+++ ..+...
T Consensus 89 ~~ll~~~~~P~----------------------------------~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~ 132 (291)
T 3mkr_A 89 DREMSRSVDVT----------------------------------NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLEC 132 (291)
T ss_dssp HHHHHSCCCCS----------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHH
T ss_pred HHHHhcccCCC----------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHH
Confidence 76666544454 556667788899999999999999998 567788
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHH
Q 009967 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTL---LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVD 385 (521)
Q Consensus 309 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 385 (521)
+..++..+.+.|++++|.+.|+++.+.. |+.... ...+..+...|++++|..+|+++....+ .++..++.+..
T Consensus 133 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p--~~~~~~~~la~ 208 (291)
T 3mkr_A 133 MAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS--PTLLLLNGQAA 208 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC--CcHHHHHHHHH
Confidence 9999999999999999999999998864 654311 1223334456899999999999987655 67888999999
Q ss_pred HHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHH
Q 009967 386 LLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVEL-GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462 (521)
Q Consensus 386 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 462 (521)
++.+.|++++|...+++. ...| +..++..++..+...|+.++ +.++++++++.+|+++.+.. ...+.+.++++
T Consensus 209 ~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~ 284 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRL 284 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHH
Confidence 999999999999999984 3344 67789999999999999876 67899999999999887654 34455555555
Q ss_pred HHH
Q 009967 463 SNI 465 (521)
Q Consensus 463 ~~~ 465 (521)
..-
T Consensus 285 ~~~ 287 (291)
T 3mkr_A 285 VLQ 287 (291)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=4.1e-18 Score=162.92 Aligned_cols=260 Identities=12% Similarity=-0.032 Sum_probs=194.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 009967 205 VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284 (521)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 284 (521)
...|..+...+.+.|++++|...|+++.... +.+...+..+..++...|+++.|...++.+.+..+. +..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3446666666666777777777776666543 234555666666666777777777777766665433 56777788888
Q ss_pred HHhcCCHHHHHHHHhhcCCCC-------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 009967 285 YAKCGSMEDSLLVFDKLTERN-------------IVTWNAVICGYAQNGRGEEAIEFFERMRINGIR-PNGVTLLGLLWA 350 (521)
Q Consensus 285 ~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~ 350 (521)
|...|++++|...|+++.+.+ ...+..+...+...|++++|...++++.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 888888888888888776411 223345578888999999999999999885311 157789999999
Q ss_pred HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 009967 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELG 428 (521)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A 428 (521)
+...|++++|...++++....+ .+..++..+..+|...|++++|...+++.. ..| +..++..+..++...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRP--EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999986654 467789999999999999999999998843 344 577899999999999999999
Q ss_pred HHHHHHHHhcCCC------------CchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967 429 EFAARRILALDPE------------DVSSYVMLSNALSVAGKWDNVSNIRRE 468 (521)
Q Consensus 429 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (521)
...|+++++..|+ +..+|..++.++...|+.+.+..+.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998776 367899999999999999999887765
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=1.5e-19 Score=169.84 Aligned_cols=284 Identities=11% Similarity=0.105 Sum_probs=124.0
Q ss_pred cCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009967 155 KLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234 (521)
Q Consensus 155 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 234 (521)
+.|++++|.++++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.+++..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 556677777777777444 37777777777777777777777653 45567777777777777788777766655553
Q ss_pred CCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHH
Q 009967 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVIC 314 (521)
Q Consensus 235 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 314 (521)
.+++.+.+.++.+|.+.|+++.+.++++ .|+..+++.++..|...|++++|...|..+ ..|..++.
T Consensus 91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 91 --ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp --------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred --CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 3456667777777777777777776664 356667888888888888888888888876 46888888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHH
Q 009967 315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK 394 (521)
Q Consensus 315 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 394 (521)
++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|...... +...+.....++..|.+.|+++
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHCCCHH
Confidence 888888888888888876 2667888888888888888888554433 2244445566778888888888
Q ss_pred HHHHHHhh-CCC-CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCC-----CCchHHHHHHHHHHhcCChHHHHHH
Q 009967 395 EAKEFLYD-LPF-DPGIGFWKALLGGCQIH--SNVELGEFAARRILALDP-----EDVSSYVMLSNALSVAGKWDNVSNI 465 (521)
Q Consensus 395 ~A~~~~~~-~~~-~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 465 (521)
+|..+++. +.. +-....|+.|...+++- ++..+.++.|..-+.+.| .++..|..+...|..-++++.|..+
T Consensus 225 Eai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 225 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 88888876 333 33455777776666554 466666666665555555 5778888888888888888888775
Q ss_pred HHH
Q 009967 466 RRE 468 (521)
Q Consensus 466 ~~~ 468 (521)
+-+
T Consensus 305 m~~ 307 (449)
T 1b89_A 305 MMN 307 (449)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=1.7e-17 Score=158.75 Aligned_cols=287 Identities=14% Similarity=0.063 Sum_probs=223.0
Q ss_pred HHhcCChHHHHH-HHHHHHHCC---CCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 009967 215 YSQTGRNEEAVN-LFIEMLREG---LVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290 (521)
Q Consensus 215 ~~~~~~~~~a~~-~~~~m~~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 290 (521)
+...|++++|.. .|++..... ...+...+..+...+...|+++.|...++.+.+..+. +..++..+..++.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcC
Confidence 344578888888 777655422 1113466888899999999999999999999988654 77889999999999999
Q ss_pred HHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHH---------------HHHHH
Q 009967 291 MEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV-TLLG---------------LLWAC 351 (521)
Q Consensus 291 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~---------------ll~~~ 351 (521)
+++|...|+++.+ .+..++..+...+...|++++|...++++.... |+.. .+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999998864 467799999999999999999999999998854 3322 2211 23334
Q ss_pred HhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHH
Q 009967 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGE 429 (521)
Q Consensus 352 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~ 429 (521)
...|++++|...++++....+..++..++..+..+|.+.|++++|...+++.. . +.+...+..+...+...|++++|+
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 48999999999999998766644467889999999999999999999998853 2 445779999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcHHHHHHH
Q 009967 430 FAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVL 509 (521)
Q Consensus 430 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 509 (521)
..|+++++..|+++.++..++.+|.+.|++++|...++++.+.... .... ....+|....++..+
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~-------------~~~~~~~~~~~~~~l 336 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK--SRGP-------------RGEGGAMSENIWSTL 336 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT--C-------------------CCCCCHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CCCc-------------cccccchhhHHHHHH
Confidence 9999999999999999999999999999999999999998764321 1100 112467778888888
Q ss_pred HHHHHHHHhc
Q 009967 510 RSCTEQIREF 519 (521)
Q Consensus 510 ~~~~~~~~~~ 519 (521)
+.++..+++.
T Consensus 337 ~~~~~~~g~~ 346 (368)
T 1fch_A 337 RLALSMLGQS 346 (368)
T ss_dssp HHHHHHHTCG
T ss_pred HHHHHHhCCh
Confidence 8888777654
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=2.3e-17 Score=163.55 Aligned_cols=384 Identities=12% Similarity=-0.018 Sum_probs=188.7
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHhHHC-----C---CCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhC------
Q 009967 73 VVSATTIIGRFAKQHHYEEAIYLFSRMLLL-----N---IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG------ 138 (521)
Q Consensus 73 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------ 138 (521)
...||.+...+...|++++|++.|++..+. + -+....+|+.+..+|...|++++|...+++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445777777777777777777777765431 1 11224456667777777777777777777665421
Q ss_pred CC-CcHHHHHHHHHHHHc--CCCHHHHHHHhhcCCC--CC-chhHHHHHHH---HHcCCCHHHHHHHHhhCCC---CChh
Q 009967 139 LQ-SNVFVGSAILDLYIK--LSSIEEATRVFEDTHN--PN-VVSYTTMICG---LLKRERFEDALKLFQEMPH---RNVV 206 (521)
Q Consensus 139 ~~-~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~--~~-~~~~~~li~~---~~~~g~~~~a~~~~~~~~~---~~~~ 206 (521)
.. ....++.....++.. .+++++|+..|++..+ |+ ...+..+..+ +...++.++|++.+++..+ .+..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 01 123344444433333 3456666666666543 32 2223222222 2233444444444443322 2333
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 009967 207 SWNAMIGGYSQ----TGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282 (521)
Q Consensus 207 ~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 282 (521)
++..+...+.. .+++++|.+.+++..... +.+...+..+...+...|+++.|...+..+.+..+. +..++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHH
Confidence 33333333322 234445555555544432 122333444444444555555555555544444332 333333333
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHH
Q 009967 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362 (521)
Q Consensus 283 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 362 (521)
.+|...+....+. .. ..........+.++.|...+++..+.. +.+..++..+...+...|++++|..
T Consensus 289 ~~y~~~~~~~~~~------~~------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 289 CCYRAKVFQVMNL------RE------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp HHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhhH------HH------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHH
Confidence 3332111000000 00 000000011233567777777776643 2234466777788888889999998
Q ss_pred HHHHchHhCCCCCChh----HHHHHHH-HHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009967 363 YFSQAKLEDPGMLKPE----HYACMVD-LLSRSGRFKEAKEFLYDL-PFDPGIGFWKALLGGCQIHSNVELGEFAARRIL 436 (521)
Q Consensus 363 ~~~~~~~~~~~~~~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 436 (521)
.|+++.... |+.. .+..+.. .+...|++++|+..+++. ...|+...... ....+..++++.+
T Consensus 356 ~~~kaL~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l 423 (472)
T 4g1t_A 356 YFQKEFSKE---LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRL 423 (472)
T ss_dssp HHHHHHHSC---CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHhcC---CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHH
Confidence 888876333 2222 2233332 234678888898888763 34555433222 2345567788888
Q ss_pred hcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcceEE
Q 009967 437 ALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWI 483 (521)
Q Consensus 437 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 483 (521)
..+|+++.+|..++.+|...|++++|++.|++..+.|...+...+|+
T Consensus 424 ~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 424 SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 89999999999999999999999999999999998876665555554
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=1.7e-16 Score=159.58 Aligned_cols=370 Identities=10% Similarity=-0.011 Sum_probs=239.3
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 009967 72 NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILD 151 (521)
Q Consensus 72 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 151 (521)
+...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|+++.|..+|+.+++. .|+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 5567777777 467788888888888887642 445666777777777778888888888887764 356666666664
Q ss_pred HH-HcCCCHHHHHH----HhhcCCC------CCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCC
Q 009967 152 LY-IKLSSIEEATR----VFEDTHN------PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220 (521)
Q Consensus 152 ~~-~~~g~~~~a~~----~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (521)
.. ...|+.+.|.+ +|+.... ++...|...+....+.... + .+...|+
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~-------------~---------~~~~~~~ 145 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAV-------------G---------SYAENQR 145 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCC-------------S---------STTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCc-------------c---------cHHHHhH
Confidence 32 34566665554 4443321 2233444444433320000 0 0001344
Q ss_pred hHHHHHHHHHHHHCCCCCCh---hhHHHHHHHH-------------HhhcchHHHHHHHHHHH------HcC---CCCC-
Q 009967 221 NEEAVNLFIEMLREGLVPNH---STLPCAIIAA-------------ANIAALGMGKSFHACAV------KFL---GKLD- 274 (521)
Q Consensus 221 ~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~- 274 (521)
++.|..+|++.... |.. ..|....... ...+++..|..++.... +.. ++|+
T Consensus 146 ~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 146 ITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 44555555444441 211 1111111100 12345666666665532 111 2333
Q ss_pred -------hhHHHHHHHHHHhc----CCH----HHHHHHHhhcCC---CChhHHHHHHHHHHH-------cCChH------
Q 009967 275 -------VFVGNSLISFYAKC----GSM----EDSLLVFDKLTE---RNIVTWNAVICGYAQ-------NGRGE------ 323 (521)
Q Consensus 275 -------~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~~~~~------ 323 (521)
...|...+...... ++. +.+..+|+++.. .++..|..++..+.+ .|+++
T Consensus 223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 23455554433322 232 467778888775 456788888888776 79987
Q ss_pred -HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC-h-hHHHHHHHHHHhcCCHHHHHHHH
Q 009967 324 -EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK-P-EHYACMVDLLSRSGRFKEAKEFL 400 (521)
Q Consensus 324 -~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~ 400 (521)
+|..++++..+.-.+-+...+..++..+...|++++|..+|+++.... |+ + ..|..++..+.+.|++++|.++|
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE---DIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS---SSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc---ccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 899999998863223356788888889999999999999999998433 43 2 47899999999999999999999
Q ss_pred hhCC-CCCC-HHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967 401 YDLP-FDPG-IGFWKALLGG-CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 401 ~~~~-~~~~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 473 (521)
++.. ..|. ...+...+.. +...|+.++|..+|+++++..|+++.+|..++..+.+.|+.++|+.+|++....+
T Consensus 380 ~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 380 KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 9843 2332 3333333322 3468999999999999999999999999999999999999999999999998864
No 29
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=1.6e-15 Score=158.72 Aligned_cols=349 Identities=14% Similarity=0.067 Sum_probs=274.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHHCCC--CCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 009967 77 TTIIGRFAKQHHYEEAIYLFSRMLLLNI--RPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYI 154 (521)
Q Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 154 (521)
...+.+|+..|.+.+|++++++....+- .-+...-+.++....+. +..+..++.+..... + ...+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHH
Confidence 4566788889999999999999884321 12234444556555554 556666666554421 1 334677888
Q ss_pred cCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 009967 155 KLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE 234 (521)
Q Consensus 155 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 234 (521)
..|.+++|..+|++.... ....+.+ +-..|++++|.++.++.. +..+|..+..++...|++++|+..|.+.
T Consensus 1061 ~lglyEEAf~IYkKa~~~-~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDVN-TSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred hCCCHHHHHHHHHHcCCH-HHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 999999999999998521 1112222 227789999999999884 5788999999999999999999999664
Q ss_pred CCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHH
Q 009967 235 GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVIC 314 (521)
Q Consensus 235 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 314 (521)
-|...|..++.+|.+.|+++.+.+++....+.... +.+.+.++.+|++.+++++...+. ..++...|..+..
T Consensus 1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e--~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE--SYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGD 1203 (1630)
T ss_pred ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc--ccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHH
Confidence 56778889999999999999999999998887633 333446999999999998655443 4567778888999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHH
Q 009967 315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK 394 (521)
Q Consensus 315 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 394 (521)
.|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. .++.+|..+..++...|++.
T Consensus 1204 ~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHH
Confidence 999999999999999984 48899999999999999999999877 36688999999999999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc--CChHHHHHHHHH
Q 009967 395 EAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA--GKWDNVSNIRRE 468 (521)
Q Consensus 395 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 468 (521)
.|......+ ..+...+..++..|...|.+++|+.+++.++.++|.+...|..++.+|.+- ++..++.++|..
T Consensus 1268 LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1268 LAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999988764 345556678999999999999999999999999999999998888887764 566666666654
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=3.7e-17 Score=153.43 Aligned_cols=257 Identities=11% Similarity=-0.053 Sum_probs=183.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 009967 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK 287 (521)
Q Consensus 208 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 287 (521)
+..+...+...|++++|..+|+++.... +.+...+..+..++...|+++.|...++.+.+..+. +..++..+..++..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHH
Confidence 4444455555555555555555554432 123344444555555555555555555555554332 45556666666667
Q ss_pred cCCHHHHHHHHhhcCC--C-ChhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009967 288 CGSMEDSLLVFDKLTE--R-NIVTWNAV--------------IC-GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349 (521)
Q Consensus 288 ~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 349 (521)
.|++++|.+.|+++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 7777777776666543 1 12222222 22 3667788999999999988754 346778888999
Q ss_pred HHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHH
Q 009967 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVEL 427 (521)
Q Consensus 350 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~ 427 (521)
.+...|++++|...++++....+ .+...+..+..++...|++++|...+++.. . +.+...+..+...+...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRP--DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999875554 456789999999999999999999998842 2 4457789999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967 428 GEFAARRILALDPE------------DVSSYVMLSNALSVAGKWDNVSNIRREM 469 (521)
Q Consensus 428 A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 469 (521)
|...++++++..|+ ++.++..++.++.+.|++++|..++++.
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999998 6889999999999999999999998754
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=6e-17 Score=148.93 Aligned_cols=243 Identities=8% Similarity=0.031 Sum_probs=186.4
Q ss_pred HHHcCCCHHHHHHHHhhCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHH
Q 009967 183 GLLKRERFEDALKLFQEMPHRNV----VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGM 258 (521)
Q Consensus 183 ~~~~~g~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 258 (521)
-....|+++.|+..++.....++ .....+.++|...|+++.|+..++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---------------------------- 59 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---------------------------- 59 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----------------------------
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----------------------------
Confidence 34455666666666665544322 2334455666666666666554322
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC----CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009967 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLT----ER-NIVTWNAVICGYAQNGRGEEAIEFFERMR 333 (521)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 333 (521)
..+|+..++..+...+...++.++|.+.++++. .| +...+..+...+...|++++|++.+++
T Consensus 60 -----------~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-- 126 (291)
T 3mkr_A 60 -----------SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-- 126 (291)
T ss_dssp -----------TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--
T ss_pred -----------cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--
Confidence 112356677788889999999999999999864 24 456777788999999999999999987
Q ss_pred HCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChh---HHHHHHHHHHhcCCHHHHHHHHhhCC--CCCC
Q 009967 334 INGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE---HYACMVDLLSRSGRFKEAKEFLYDLP--FDPG 408 (521)
Q Consensus 334 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~ 408 (521)
+.+...+..++..+...|++++|...++++.... |+.. ....++..+...|++++|..+|+++. .+.+
T Consensus 127 ----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~ 199 (291)
T 3mkr_A 127 ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT 199 (291)
T ss_dssp ----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC
T ss_pred ----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc
Confidence 4677788899999999999999999999998554 4432 12234455556699999999999863 3567
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHH-HHHHHHHHHhCC
Q 009967 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN-VSNIRREMKEKG 473 (521)
Q Consensus 409 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g 473 (521)
...++.+..++...|++++|+..|+++++.+|+++.++..++.++...|+.++ +.++++++.+..
T Consensus 200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 88999999999999999999999999999999999999999999999999976 578999887653
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=8.6e-17 Score=153.68 Aligned_cols=232 Identities=14% Similarity=0.073 Sum_probs=197.9
Q ss_pred ChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHH
Q 009967 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICG 315 (521)
Q Consensus 239 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 315 (521)
+...+......+...|+++.|..+++.+.+..+. +..++..+..+|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4456888899999999999999999999998765 788999999999999999999999999874 457799999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHH
Q 009967 316 YAQNGRGEEAIEFFERMRINGIRPNGV-----------TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMV 384 (521)
Q Consensus 316 ~~~~~~~~~A~~~~~~m~~~~~~p~~~-----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 384 (521)
|...|++++|...++++.+.. |+.. .+..+...+...|++++|..+++++....+..+++.++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999998742 4322 233457788999999999999999987766444788999999
Q ss_pred HHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHH
Q 009967 385 DLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462 (521)
Q Consensus 385 ~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 462 (521)
.+|.+.|++++|.+.+++.. . +.+..+|..+..++...|++++|+..|+++++..|+++.++..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999853 2 456779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 009967 463 SNIRREMKEKG 473 (521)
Q Consensus 463 ~~~~~~m~~~g 473 (521)
...++++.+..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999987643
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=7.2e-16 Score=152.73 Aligned_cols=372 Identities=11% Similarity=-0.036 Sum_probs=226.2
Q ss_pred hhhhcccCCChhHHHHHhccCC-----------CC-CcccHHHHHHHHHhcCChHHHHHHHHHhHHC-----C-CCC-Ch
Q 009967 48 SVSCGSESDKFSSVHQVFDEVP-----------DL-NVVSATTIIGRFAKQHHYEEAIYLFSRMLLL-----N-IRP-SE 108 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~-----------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~-~~p-~~ 108 (521)
|...+...|++++|++.|++.. .| ...+|+.+...|...|++++|...+++..+. + ..+ ..
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~ 136 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence 6778889999999999997531 12 3467999999999999999999999987642 1 111 23
Q ss_pred hhHHHHHHHHc--CCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHH---HHcCCCHHHHHHHhhcCCC--C-CchhHHHH
Q 009967 109 FTFGSVIPSST--ALEDLNLGKQLHAWATKVGLQSNVFVGSAILDL---YIKLSSIEEATRVFEDTHN--P-NVVSYTTM 180 (521)
Q Consensus 109 ~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l 180 (521)
.++.....++. ..+++++|+..|+...+.. +-+...+..+..+ +...++.++|++.+++..+ | +...+..+
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l 215 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLL 215 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHH
Confidence 45555544443 4568999999999999865 3445555555544 4456788888888887654 3 44556666
Q ss_pred HHHHHc----CCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHh
Q 009967 181 ICGLLK----RERFEDALKLFQEMPH---RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH-STLPCAIIAAAN 252 (521)
Q Consensus 181 i~~~~~----~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~ 252 (521)
...+.. .|++++|.+.+++... .+..++..+...|...|++++|...+++..+.. |+. .++..+..++..
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 216 ALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRA 293 (472)
T ss_dssp HHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHH
Confidence 555544 4678899999987653 467889999999999999999999999998853 554 344444444432
Q ss_pred hcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHH
Q 009967 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFF 329 (521)
Q Consensus 253 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~ 329 (521)
.+....... ...........+..+.|...|++..+ .+..++..+...|...|++++|...|
T Consensus 294 ~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 357 (472)
T 4g1t_A 294 KVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYF 357 (472)
T ss_dssp HHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHH
Confidence 221111100 00011111122345677777777653 45568888999999999999999999
Q ss_pred HHHHHCCCCCCHH--HHHHHHH-HHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CC
Q 009967 330 ERMRINGIRPNGV--TLLGLLW-ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PF 405 (521)
Q Consensus 330 ~~m~~~~~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 405 (521)
++..+....|... .+..+.. .....|+.++|...|++..... |+....... ...+.++++.. ..
T Consensus 358 ~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~---~~~~~~~~~---------~~~l~~~~~~~l~~ 425 (472)
T 4g1t_A 358 QKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN---QKSREKEKM---------KDKLQKIAKMRLSK 425 (472)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC---CCCHHHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHHHH---------HHHHHHHHHHHHHh
Confidence 9988864333221 2223322 2356789999999999887433 343222211 22233333321 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 009967 406 -DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLS 450 (521)
Q Consensus 406 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 450 (521)
+.+..+|..+...+...|++++|++.|+++++.+|.+|.+...++
T Consensus 426 ~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 426 NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp CC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 445668999999999999999999999999999998887766554
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=5.3e-16 Score=145.50 Aligned_cols=261 Identities=10% Similarity=-0.006 Sum_probs=135.2
Q ss_pred hhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCC
Q 009967 109 FTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRE 188 (521)
Q Consensus 109 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 188 (521)
..+......+...|++++|..+++.+.+.. +.+...+..+..++...|++++|...|+++.+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---------------- 84 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARML---------------- 84 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------
Confidence 334445555556666666666666665543 334455555555555555555555555544320
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh-HHHH--------------HH-HHHh
Q 009967 189 RFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST-LPCA--------------II-AAAN 252 (521)
Q Consensus 189 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l--------------l~-~~~~ 252 (521)
...+..++..+...+...|++++|.+.++++.... |+... +..+ .. .+..
T Consensus 85 ------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (327)
T 3cv0_A 85 ------------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAA 150 (327)
T ss_dssp ------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTS
T ss_pred ------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHH
Confidence 11245566667777777777777777777776643 32221 1111 11 2445
Q ss_pred hcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHH
Q 009967 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFF 329 (521)
Q Consensus 253 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~ 329 (521)
.|+++.|...++.+.+..+. +..++..+..++...|++++|.+.++++.+ .+..+|..+...+...|++++|...+
T Consensus 151 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 229 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAY 229 (327)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55566666666665555433 445555555555566666666655555442 23345555555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCC----------ChhHHHHHHHHHHhcCCHHHHHHH
Q 009967 330 ERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML----------KPEHYACMVDLLSRSGRFKEAKEF 399 (521)
Q Consensus 330 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~ 399 (521)
+++.+.. +.+..++..+..++...|++++|...++++....+... +...+..+..++.+.|++++|..+
T Consensus 230 ~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 230 NRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 5555432 22344555555555555555555555555543222100 233444455555555555555555
Q ss_pred Hhh
Q 009967 400 LYD 402 (521)
Q Consensus 400 ~~~ 402 (521)
+++
T Consensus 309 ~~~ 311 (327)
T 3cv0_A 309 YAQ 311 (327)
T ss_dssp TTC
T ss_pred HHH
Confidence 443
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=1.6e-15 Score=133.10 Aligned_cols=195 Identities=14% Similarity=0.014 Sum_probs=156.4
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009967 272 KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLL 348 (521)
Q Consensus 272 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 348 (521)
+++...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 34677788888899999999999999998865 356788889999999999999999999988853 23556888888
Q ss_pred HHHHhh-----------ccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCCHHHHHHHH
Q 009967 349 WACNHT-----------GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPGIGFWKALL 416 (521)
Q Consensus 349 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~ 416 (521)
.++... |++++|...++++....+ .+...+..+..+|...|++++|+..+++.. ...+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP--RYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 999999999999986664 456788999999999999999999998842 226788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469 (521)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 469 (521)
.++...|++++|+..|+++++.+|+++.++..++.++.+.|++++|+..+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999874
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=4.9e-15 Score=133.73 Aligned_cols=219 Identities=11% Similarity=0.074 Sum_probs=164.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 009967 206 VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFY 285 (521)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 285 (521)
..|..+...+...|++++|...|++..+.. . +...+..+..++
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~-----------------------------------~~~~~~~~~~~~ 48 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--K-----------------------------------DITYLNNRAAAE 48 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--C-----------------------------------CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--c-----------------------------------cHHHHHHHHHHH
Confidence 455566666666666666666666665543 3 445555566666
Q ss_pred HhcCCHHHHHHHHhhcCC--C----C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc
Q 009967 286 AKCGSMEDSLLVFDKLTE--R----N----IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG 355 (521)
Q Consensus 286 ~~~g~~~~A~~~~~~~~~--~----~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 355 (521)
...|++++|...|+++.+ | + ..+|..+...+...|++++|...|+++... .|+. ..+...|
T Consensus 49 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~ 119 (258)
T 3uq3_A 49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLR 119 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHh
Confidence 666666666666665543 1 1 456777888888888888888888888774 3553 3456678
Q ss_pred cHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009967 356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAAR 433 (521)
Q Consensus 356 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 433 (521)
++++|...++++....+ .+...+..+...+...|++++|...+++.. .+.+...+..+...+...|++++|+..++
T Consensus 120 ~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 120 NAEKELKKAEAEAYVNP--EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCc--chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 88899999988864332 345578888889999999999999988753 24457788889999999999999999999
Q ss_pred HHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 434 RILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 434 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
++++..|+++.++..++.++...|++++|...+++..+.
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998764
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.3e-15 Score=135.94 Aligned_cols=238 Identities=10% Similarity=-0.004 Sum_probs=178.4
Q ss_pred chhHHHHHHHHHcCCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCChhhHHHHHHH
Q 009967 174 VVSYTTMICGLLKRERFEDALKLFQEMPH--RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREG--LVPNHSTLPCAIIA 249 (521)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~ 249 (521)
...|..+...+...|++++|+..|++..+ .+..+|..+..++...|++++|...+++..... ..|+...
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~------- 77 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV------- 77 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH-------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH-------
Confidence 35678889999999999999999987643 678899999999999999999999999987742 1111100
Q ss_pred HHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHH
Q 009967 250 AANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIVTWNAVICGYAQNGRGEEAIE 327 (521)
Q Consensus 250 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~ 327 (521)
...++..+..++...|++++|...|+++.+ |+ ...+...|++++|..
T Consensus 78 ------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 78 ------------------------ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELK 126 (258)
T ss_dssp ------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHH
Confidence 134455566666666777777666666654 33 234556677888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-
Q 009967 328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F- 405 (521)
Q Consensus 328 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~- 405 (521)
.++++.... +.+...+..+...+...|++++|...++++....+ .++.++..+..+|.+.|++++|...+++.. .
T Consensus 127 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 127 KAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 888877742 22344677777788888888888888888875554 456778888888999999999998888742 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCchHHHHHHHH
Q 009967 406 DPGIGFWKALLGGCQIHSNVELGEFAARRILALD------PEDVSSYVMLSNA 452 (521)
Q Consensus 406 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~ 452 (521)
+.+...|..+...+...|++++|...++++++.. |++..++..+..+
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 3457788888899999999999999999999988 8777777666554
No 38
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=8.6e-15 Score=143.48 Aligned_cols=377 Identities=9% Similarity=-0.035 Sum_probs=218.2
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh---HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHc
Q 009967 79 IIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL---NLGKQLHAWATKVGLQSNVFVGSAILDLYIK 155 (521)
Q Consensus 79 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 155 (521)
+...+.+.|++++|++.|++..+.| +...+..+...+...|+. ++|..+|+...+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 3444555566666666666655544 122222233333444444 5566666555532 33334444443333
Q ss_pred CC-----CHHHHHHHhhcCCC-CCchhHHHHHHHHHcCCCHHHH---HHHHhhCCC-CChhHHHHHHHHHHhcCChHHHH
Q 009967 156 LS-----SIEEATRVFEDTHN-PNVVSYTTMICGLLKRERFEDA---LKLFQEMPH-RNVVSWNAMIGGYSQTGRNEEAV 225 (521)
Q Consensus 156 ~g-----~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a---~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~ 225 (521)
.| ++++|...|++..+ .+...+..|...|...+..+++ .+.+..... .+...+..+...|...+.++++.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 33 45566666655544 2333555555555554433322 222222221 34556666777777766554444
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhhc---chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc----CCHHHHHHHH
Q 009967 226 NLFIEMLREGLVPNHSTLPCAIIAAANIA---ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC----GSMEDSLLVF 298 (521)
Q Consensus 226 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~ 298 (521)
.....+.+.-...++..+..+...+...| +.++|...+....+.|.. +...+..+..+|... +++++|.+.|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 43333322212223336666666676677 777777777777777644 444446677777554 7899999999
Q ss_pred hhcCCCChhHHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc-----cHHHHHHHHHHchHh
Q 009967 299 DKLTERNIVTWNAVICG-Y--AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG-----LVEKGYSYFSQAKLE 370 (521)
Q Consensus 299 ~~~~~~~~~~~~~li~~-~--~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~ 370 (521)
++....++..+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|..+|++..
T Consensus 241 ~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-- 314 (452)
T 3e4b_A 241 EKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-- 314 (452)
T ss_dssp HHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--
T ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--
Confidence 98884455677777776 4 45789999999999998876 6667777777776 55 8999999999874
Q ss_pred CCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCC
Q 009967 371 DPGMLKPEHYACMVDLLSR----SGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI----HSNVELGEFAARRILALDPED 442 (521)
Q Consensus 371 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~ 442 (521)
.-++..+..|..+|.. ..++++|...|++.....+......|...|.. ..|.++|...|+++.+.++.+
T Consensus 315 ---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 315 ---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp ---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred ---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 2466778888888876 34899999999885434455566667766654 469999999999999987644
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 443 VSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
.......+......++..+|..+.++..+.
T Consensus 392 a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 392 ANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 443333333334445677888888776543
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=1.8e-14 Score=131.49 Aligned_cols=240 Identities=11% Similarity=-0.046 Sum_probs=177.1
Q ss_pred cCChHHHHHHHHHHHHCCCC---CChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 009967 218 TGRNEEAVNLFIEMLREGLV---PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294 (521)
Q Consensus 218 ~~~~~~a~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 294 (521)
.|++++|+..|+++.+.... .+..++..+..++...|+++.|...++.+.+..+. +..++..+..+|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence 45566666666666654211 12344556666666667777777777666666543 677888888899999999999
Q ss_pred HHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhC
Q 009967 295 LLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371 (521)
Q Consensus 295 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 371 (521)
...|+++.+ .+..++..+...+...|++++|...++++.+. .|+.......+..+...|++++|...+++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 999988874 45678899999999999999999999999874 3555555555556677899999999998876555
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 009967 372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG-----IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSS 445 (521)
Q Consensus 372 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 445 (521)
+ ++...+ .++..+...++.++|...+++.. ..|+ ...+..+...+...|++++|...|+++++.+|++...
T Consensus 175 ~--~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 175 D--KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp C--CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred C--cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 4 333344 46777788888999999998753 2232 4678888999999999999999999999999977554
Q ss_pred HHHHHHHHHhcCChHHHHHHH
Q 009967 446 YVMLSNALSVAGKWDNVSNIR 466 (521)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~ 466 (521)
+ +.++...|++++|++.+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 4 66788889999998876
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=2.6e-14 Score=130.19 Aligned_cols=246 Identities=13% Similarity=-0.003 Sum_probs=150.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC--hhHHHHHHHHH
Q 009967 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD--VFVGNSLISFY 285 (521)
Q Consensus 208 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~ 285 (521)
+......+...|++++|+..|++..+.. +.+...+..+..++...|+++.|...++.+.+....++ ...+..+..++
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3444555566666666666666665532 11223555555566666666666666666655321111 22356666777
Q ss_pred HhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHH
Q 009967 286 AKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362 (521)
Q Consensus 286 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 362 (521)
...|++++|...|++..+ .+..+|..+...|...|++++|...+++..+.. +.+...+..+...+...+++++|..
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776653 344567777777777777777777777766542 2234455555523334457777777
Q ss_pred HHHHchHhCCCCCChhHHHHHHHHHHhcCC---HHHHHHHHhhCC----CCCC------HHHHHHHHHHHHhcCCHHHHH
Q 009967 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGR---FKEAKEFLYDLP----FDPG------IGFWKALLGGCQIHSNVELGE 429 (521)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~~~------~~~~~~l~~~~~~~g~~~~A~ 429 (521)
.|+++.+..+ .+...+..+..++...|+ +++|...+++.. ..|+ ..+|..+...+...|++++|.
T Consensus 164 ~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 164 SFVKVLELKP--NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHST--TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCc--cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7777765443 335566666777776666 555666555431 1232 246777888888999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhcC
Q 009967 430 FAARRILALDPEDVSSYVMLSNALSVAG 457 (521)
Q Consensus 430 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g 457 (521)
+.++++++.+|+++.++..+.......+
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999999999988887776655443
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=3.4e-14 Score=139.24 Aligned_cols=344 Identities=10% Similarity=-0.009 Sum_probs=238.7
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCH---HHHHHHhhcCCCCCchhHHHHHHHHHcCC--
Q 009967 114 VIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI---EEATRVFEDTHNPNVVSYTTMICGLLKRE-- 188 (521)
Q Consensus 114 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~g-- 188 (521)
+...+.+.|++++|.++|+...+.|. ...+..+...|...|+. ++|...|++..+.+...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 44556677999999999999998772 33445566677778888 99999999988777778888888666665
Q ss_pred ---CHHHHHHHHhhCCCC-ChhHHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHH
Q 009967 189 ---RFEDALKLFQEMPHR-NVVSWNAMIGGYSQTGRNE---EAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKS 261 (521)
Q Consensus 189 ---~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 261 (521)
+.++|+..|++..++ +...+..|...|...+..+ ++.+.+......| +......+...+...+.++.+..
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 788999999987653 4567888888888776544 3555555555544 34456667777777775555544
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhhcCC---CChhHHHHHHHHHHHc----CChHHHHHHHHH
Q 009967 262 FHACAVKFLGKLDVFVGNSLISFYAKCG---SMEDSLLVFDKLTE---RNIVTWNAVICGYAQN----GRGEEAIEFFER 331 (521)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----~~~~~A~~~~~~ 331 (521)
......+.-...++..+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... +++++|...|++
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 4333333333335558888999999999 99999999998865 3344446777777654 799999999999
Q ss_pred HHHCCCCCCHHHHHHHHHH-H--HhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHhhC
Q 009967 332 MRINGIRPNGVTLLGLLWA-C--NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG-----RFKEAKEFLYDL 403 (521)
Q Consensus 332 m~~~~~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~ 403 (521)
.. .| +...+..+... + ...+++++|...|++.. ..+ ++..+..|..+|. .| ++++|.+.|++.
T Consensus 243 aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 243 IA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGR-AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred Hc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 87 43 45566666665 4 56899999999999986 554 6777888888887 56 999999999998
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCc
Q 009967 404 PFDPGIGFWKALLGGCQI----HSNVELGEFAARRILALDPEDVSSYVMLSNALSV----AGKWDNVSNIRREMKEKGMT 475 (521)
Q Consensus 404 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~ 475 (521)
. ..+...+..|...|.. ..|+++|...|+++.+. .++.....++.+|.. ..+.++|...++...+.|..
T Consensus 314 a-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 314 V-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp T-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred h-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 8 7778888888877766 34999999999999875 467788999999885 46899999999999888753
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=2.8e-13 Score=123.53 Aligned_cols=223 Identities=9% Similarity=-0.049 Sum_probs=125.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 009967 204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283 (521)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 283 (521)
+..++..+...+...|++++|+..|++..+.+ +...+ ..+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~-----------------------------------~~lg~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGC-----------------------------------FNLGV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHH-----------------------------------HHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHH-----------------------------------HHHHH
Confidence 45566677777777777777777777776622 22333 33444
Q ss_pred HHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-
Q 009967 284 FYAK----CGSMEDSLLVFDKLTE-RNIVTWNAVICGYAQ----NGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH- 353 (521)
Q Consensus 284 ~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~- 353 (521)
.|.. .+++++|...|++..+ .+...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 4444 4455555554444432 233444555555555 555555555555555543 44455555555555
Q ss_pred ---hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----c
Q 009967 354 ---TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR----SGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI----H 422 (521)
Q Consensus 354 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~ 422 (521)
.+++++|...|++.. ..+ +...+..+..+|.. .+++++|...+++.....+...+..+...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKAC-DLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHH-hcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 556666666665554 222 34445555555555 55666666665553222344555555556666 6
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 009967 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSV----AGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 423 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 473 (521)
+++++|+..|+++.+.+| +..+..++.+|.. .+++++|...+++..+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 666666666666666544 5566666666666 666666666666665554
No 43
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.62 E-value=5e-16 Score=157.59 Aligned_cols=116 Identities=12% Similarity=0.066 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009967 275 VFVGNSLISFYAKCGSMEDSLLVFDKLT-------ERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGL 347 (521)
Q Consensus 275 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 347 (521)
..+|++++++|++.|++++|.++|.+|. .||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3467777777777777777777775543 367777777777777777777777777777777777777777777
Q ss_pred HHHHHhhcc-HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcC
Q 009967 348 LWACNHTGL-VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG 391 (521)
Q Consensus 348 l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (521)
|.++++.|+ .+.|.++|++|. ..|+.||..+|+.++....+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHH
Confidence 777777766 456777777774 6677777777776666555543
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=7.1e-14 Score=132.83 Aligned_cols=246 Identities=9% Similarity=0.065 Sum_probs=184.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcc-hHHHHHHHHHHHHcCCCCChhHHHHHH
Q 009967 205 VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN-HSTLPCAIIAAANIAA-LGMGKSFHACAVKFLGKLDVFVGNSLI 282 (521)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 282 (521)
..+|..+..++.+.|++++|+..|++.+... |+ ...|..+..++...|+ ++.|...++.+++..+. +..+|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 4566777777777777777777777777643 43 4455666666677775 77777777777776655 777888888
Q ss_pred HHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-hccHH
Q 009967 283 SFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH-TGLVE 358 (521)
Q Consensus 283 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~ 358 (521)
.++.+.|++++|+..|+++.+ .+...|..+..++...|++++|+..++++.+.. +-+...|+.+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 888888899999888888874 466788888888889999999999999988854 2356688888888877 55546
Q ss_pred HH-----HHHHHHchHhCCCCCChhHHHHHHHHHHhcC--CHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC-------
Q 009967 359 KG-----YSYFSQAKLEDPGMLKPEHYACMVDLLSRSG--RFKEAKEFLYDLPFDP-GIGFWKALLGGCQIHS------- 423 (521)
Q Consensus 359 ~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g------- 423 (521)
+| ...++++....+ -+...|..+..++...| ++++|.+.+.++...| +...+..++..+...|
T Consensus 253 eA~~~~el~~~~~Al~l~P--~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVP--HNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHHST--TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 66 477888775554 35667888888888887 6888888888774444 4557778888877763
Q ss_pred -C-HHHHHHHHHHH-HhcCCCCchHHHHHHHHHHhc
Q 009967 424 -N-VELGEFAARRI-LALDPEDVSSYVMLSNALSVA 456 (521)
Q Consensus 424 -~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 456 (521)
+ .++|+++|+++ .+.+|.....|..++..+...
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58899999999 899998888888888776543
No 45
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=4.7e-16 Score=157.78 Aligned_cols=149 Identities=10% Similarity=0.016 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 009967 206 VSWNAMIGGYSQTGRNEEAVNLFIEMLR---EGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI 282 (521)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 282 (521)
.+||++|++|++.|+.++|.++|++|.+ .|+.||..||+++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P--------- 198 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP--------- 198 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC---------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---------
Confidence 5677777777777777777777766653 3566666665555555555555555555555555555554
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHH
Q 009967 283 SFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRG-EEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGY 361 (521)
Q Consensus 283 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 361 (521)
|+.|||++|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+.+ ++
T Consensus 199 ----------------------DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL 252 (1134)
T 3spa_A 199 ----------------------DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VL 252 (1134)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HH
T ss_pred ----------------------cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HH
Confidence 555566666666777764 788899999999999999999999887665543 44
Q ss_pred HHHHHchHhCCCCCC------hhHHHHHHHHHHhcC
Q 009967 362 SYFSQAKLEDPGMLK------PEHYACMVDLLSRSG 391 (521)
Q Consensus 362 ~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g 391 (521)
+..+++ ..++.|+ ..+-..|.+.|.+.+
T Consensus 253 ~~Vrkv--~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 253 KAVHKV--KPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHGGG--CCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHh--CcccCCCCCCcccccchHHHHHHHccCC
Confidence 444444 2223332 233445666666554
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=4.7e-14 Score=126.06 Aligned_cols=196 Identities=9% Similarity=0.051 Sum_probs=137.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009967 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350 (521)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 350 (521)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 455666677777888888888888887754 345677778888888888888888888877653 3356677777788
Q ss_pred HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHH
Q 009967 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELG 428 (521)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A 428 (521)
+...|++++|...++++....+ .+...+..+..++.+.|++++|...+++.. . +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGM--ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTC--CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888765544 456677788888888888888888887742 2 34566778888888888888888
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 429 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
+..++++++..|+++.++..++.+|...|++++|...++++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 88888888888888888888888888888888888888887654
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=4.5e-13 Score=120.42 Aligned_cols=167 Identities=13% Similarity=0.044 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 009967 277 VGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN-GVTLLGLLWACN 352 (521)
Q Consensus 277 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~ 352 (521)
.+..+..++...|++++|.+.|+++.+ .+...+..+...+...|++++|..+++++...+..|+ ...+..+...+.
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~ 152 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL 152 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH
Confidence 344444444444444444444444332 2333444455555555555555555555544222232 234444445555
Q ss_pred hhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 009967 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEF 430 (521)
Q Consensus 353 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~ 430 (521)
..|++++|...++++....+ .+...+..+..+|...|++++|...+++.. . +.+...+..+...+...|++++|.+
T Consensus 153 ~~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 230 (252)
T 2ho1_A 153 QMKKPAQAKEYFEKSLRLNR--NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHH
Confidence 55555555555555543332 233444455555555555555555554421 1 2233344444445555555555555
Q ss_pred HHHHHHhcCCCCchH
Q 009967 431 AARRILALDPEDVSS 445 (521)
Q Consensus 431 ~~~~~~~~~p~~~~~ 445 (521)
.++++.+..|+++..
T Consensus 231 ~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 231 YGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHCTTSHHH
T ss_pred HHHHHHHHCCCCHHH
Confidence 555555555544443
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=1.6e-13 Score=123.39 Aligned_cols=197 Identities=11% Similarity=-0.036 Sum_probs=171.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009967 275 VFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351 (521)
Q Consensus 275 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 351 (521)
...+..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 55677788889999999999999998764 466789999999999999999999999998854 34677888899999
Q ss_pred HhhccHHHHHHHHHHchHhCCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHH
Q 009967 352 NHTGLVEKGYSYFSQAKLEDPGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELG 428 (521)
Q Consensus 352 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A 428 (521)
...|++++|..+++++.. .+..| +...+..+..+|...|++++|.+.+++.. . +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999874 33334 45678889999999999999999998843 2 34577899999999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967 429 EFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 429 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 473 (521)
...++++++..|+++..+..++.++...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999988754
No 49
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=1.6e-13 Score=120.24 Aligned_cols=191 Identities=15% Similarity=0.031 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 009967 205 VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPN-HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283 (521)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 283 (521)
...+..+...+...|++++|...|++..+.. |+ ...+..+..++...|+++.|...++.+.+..+. +...+..+..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 3444455555555555555555555554432 22 222333333333333333333333333333322 3344444444
Q ss_pred HHHhc-----------CCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009967 284 FYAKC-----------GSMEDSLLVFDKLTE--R-NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLW 349 (521)
Q Consensus 284 ~~~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 349 (521)
++.+. |++++|...|++..+ | +...|..+..++...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 44444 445555544444432 2 23344444445555555555555555544433 34444444555
Q ss_pred HHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 009967 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402 (521)
Q Consensus 350 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (521)
++...|++++|...|+++....+ .++..+..+..++.+.|++++|...+++
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAP--KDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHTC-------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555555555443332 2333444444555555555555444443
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=5.9e-14 Score=125.37 Aligned_cols=213 Identities=15% Similarity=0.091 Sum_probs=147.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 009967 204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283 (521)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 283 (521)
....|..+...+...|++++|...|+++.... |+ +...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~----------------------------------~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KE----------------------------------DAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTTC--TT----------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cc----------------------------------cHHHHHHHHH
Confidence 34456666666666677777777776666532 32 4555666677
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHH
Q 009967 284 FYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKG 360 (521)
Q Consensus 284 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 360 (521)
++...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 77777777777777776653 355677778888888888888888888887753 34566778888888899999999
Q ss_pred HHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009967 361 YSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILAL 438 (521)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (521)
...++++....+ .+...+..+..++.+.|++++|...+++.. . +.+...+..+...+...|++++|...++++++.
T Consensus 145 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 145 LPYLQRAVELNE--NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999998875554 456778888999999999999999988742 2 445778889999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHh
Q 009967 439 DPEDVSSYVMLSNALSV 455 (521)
Q Consensus 439 ~p~~~~~~~~l~~~~~~ 455 (521)
.|+++.++..+......
T Consensus 223 ~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 223 QPDHMLALHAKKLLGHH 239 (243)
T ss_dssp CTTCHHHHHHHTC----
T ss_pred CcchHHHHHHHHHHHhh
Confidence 99998888777655443
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=3.1e-13 Score=119.02 Aligned_cols=197 Identities=11% Similarity=0.046 Sum_probs=147.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009967 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350 (521)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 350 (521)
+...+..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|...++++.... +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 445566677777777888888877777653 345677777788888888888888888877643 3356677777778
Q ss_pred HHhh-ccHHHHHHHHHHchHhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHH
Q 009967 351 CNHT-GLVEKGYSYFSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVE 426 (521)
Q Consensus 351 ~~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~ 426 (521)
+... |++++|...++++.. .+..|+ ...+..+..++...|++++|...+++.. . +.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 888888888888764 332233 4567778888888888888888887642 2 334667788888888888888
Q ss_pred HHHHHHHHHHhcCC-CCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 427 LGEFAARRILALDP-EDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 427 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
+|...++++++..| +++..+..++..+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888888888 78888888888888888888888888887654
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=3.2e-13 Score=122.95 Aligned_cols=228 Identities=5% Similarity=-0.081 Sum_probs=186.8
Q ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChh----HHHHHHH
Q 009967 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIV----TWNAVIC 314 (521)
Q Consensus 241 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li~ 314 (521)
..+......+...|+++.|...++.+.+..+. +...+..+..+|...|++++|...|+++.+ ++.. .|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34556678889999999999999999988655 566888899999999999999999998875 3332 4889999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHH
Q 009967 315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFK 394 (521)
Q Consensus 315 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 394 (521)
.+...|++++|...+++..+.. +.+..++..+...+...|++++|...++++....+ .+...+..+...+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT--TDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC--CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC--CcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998853 33557889999999999999999999999874432 45667777883444556999
Q ss_pred HHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCC-----chHHHHHHHHHHhcCChHH
Q 009967 395 EAKEFLYDLP-FDP-GIGFWKALLGGCQIHSN---VELGEFAARRILALD---PED-----VSSYVMLSNALSVAGKWDN 461 (521)
Q Consensus 395 ~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~ 461 (521)
+|.+.+++.. ..| +...+..+...+...|+ +++|+..++++++.. |+. ..+|..++..|...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999998853 334 46788888888888888 888999999999865 432 2588899999999999999
Q ss_pred HHHHHHHHHhC
Q 009967 462 VSNIRREMKEK 472 (521)
Q Consensus 462 A~~~~~~m~~~ 472 (521)
|...+++..+.
T Consensus 240 A~~~~~~al~~ 250 (272)
T 3u4t_A 240 ADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999998764
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=5.3e-13 Score=126.82 Aligned_cols=224 Identities=10% Similarity=0.036 Sum_probs=191.9
Q ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-HHHHHHHHhhcCC---CChhHHHHHHHHH
Q 009967 241 STLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS-MEDSLLVFDKLTE---RNIVTWNAVICGY 316 (521)
Q Consensus 241 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 316 (521)
..+..+..++...|+++.|...++.+++..+. +..+|+.+..++...|+ +++|+..|+++.+ .+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34666777788899999999999999998776 78889999999999997 9999999999875 4667999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh-cCCHHH
Q 009967 317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR-SGRFKE 395 (521)
Q Consensus 317 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 395 (521)
...|++++|+..|+++.+.. +-+...|..+..++...|++++|...++++....+ .+...|+.+..+|.+ .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P--~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV--RNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999854 33667899999999999999999999999986665 467789999999999 666577
Q ss_pred H-----HHHHhhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC---------
Q 009967 396 A-----KEFLYDL-PFDP-GIGFWKALLGGCQIHS--NVELGEFAARRILALDPEDVSSYVMLSNALSVAG--------- 457 (521)
Q Consensus 396 A-----~~~~~~~-~~~~-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------- 457 (521)
| ++.+++. ...| +...|..+...+...| ++++|++.++++ +.+|+++.++..++.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 4666653 3344 5668999999888888 699999999998 889999999999999999874
Q ss_pred ChHHHHHHHHHH
Q 009967 458 KWDNVSNIRREM 469 (521)
Q Consensus 458 ~~~~A~~~~~~m 469 (521)
.+++|+.+++++
T Consensus 333 ~~~~A~~~~~~l 344 (382)
T 2h6f_A 333 ILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 358999999997
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=7.7e-13 Score=120.57 Aligned_cols=225 Identities=12% Similarity=-0.005 Sum_probs=153.0
Q ss_pred chhHHHHHHHHHcCCCHHHHHHHHhhCCCC-ChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 009967 174 VVSYTTMICGLLKRERFEDALKLFQEMPHR-NVVSWNAMIGGYSQ----TGRNEEAVNLFIEMLREGLVPNHSTLPCAII 248 (521)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 248 (521)
..++..+...+...|++++|+..|++..++ +..++..+...|.. .+++++|...|++..+.+ +..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~------- 75 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN------- 75 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH-------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH-------
Confidence 344555666666666666666666665543 56677888888888 899999999998887754 333
Q ss_pred HHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHH----c
Q 009967 249 AAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAK----CGSMEDSLLVFDKLTE-RNIVTWNAVICGYAQ----N 319 (521)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~ 319 (521)
.+..+..+|.. .+++++|...|++..+ .+...+..+...|.. .
T Consensus 76 ----------------------------a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 76 ----------------------------GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp ----------------------------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSC
T ss_pred ----------------------------HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcc
Confidence 33444444555 5555555555555543 344556666666666 7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh----cC
Q 009967 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH----TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR----SG 391 (521)
Q Consensus 320 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 391 (521)
+++++|...|++..+.+ +...+..+...+.. .+++++|...|++..+ .+ ++..+..+..+|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACD-LK---DSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCc
Confidence 77777777777777654 45556666666666 7788888888877753 22 45667777777777 78
Q ss_pred CHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCc
Q 009967 392 RFKEAKEFLYDLPFDPGIGFWKALLGGCQI----HSNVELGEFAARRILALDPEDV 443 (521)
Q Consensus 392 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~ 443 (521)
++++|.+.+++.....+...+..+...+.. .+++++|+..|+++.+.+|++.
T Consensus 201 ~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 201 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 888888888764322336677777777877 8899999999999999888543
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=1.1e-12 Score=115.44 Aligned_cols=208 Identities=11% Similarity=0.045 Sum_probs=154.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 009967 204 NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283 (521)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 283 (521)
+...|..+...+...|++++|.+.|+++.... |+ +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~----------------------------------~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PK----------------------------------NELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--cc----------------------------------chHHHHHHHH
Confidence 34556666777777777777777777766532 32 3455666667
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhccHH
Q 009967 284 FYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQN-GRGEEAIEFFERMRINGIRPN-GVTLLGLLWACNHTGLVE 358 (521)
Q Consensus 284 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~ 358 (521)
++...|++++|.+.|+++.+ .+..++..+...+... |++++|...++++.+.+..|+ ...+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 77777777777777776653 3556777788888888 888888888888877333344 457777888888899999
Q ss_pred HHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009967 359 KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-D-PGIGFWKALLGGCQIHSNVELGEFAARRI 435 (521)
Q Consensus 359 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 435 (521)
+|...++++....+ .+...+..+..++.+.|++++|...+++.. . + .+...+..+...+...|+.+.|..+++.+
T Consensus 131 ~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAAQP--QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999988875544 346778888899999999999999988743 2 3 46667777777788999999999999999
Q ss_pred HhcCCCCchHHHHH
Q 009967 436 LALDPEDVSSYVML 449 (521)
Q Consensus 436 ~~~~p~~~~~~~~l 449 (521)
.+..|+++.....+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 99999888766544
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=1.2e-13 Score=133.70 Aligned_cols=262 Identities=14% Similarity=0.101 Sum_probs=136.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHHhhcchHHHHHHHHHHHHc----CCCC-ChhH
Q 009967 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH-----STLPCAIIAAANIAALGMGKSFHACAVKF----LGKL-DVFV 277 (521)
Q Consensus 208 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 277 (521)
+......+...|++++|...|++....+ |+. ..+..+...+...|+++.|...++.+.+. +..| ...+
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3444444455555555555555544432 221 23334444444555555555544443322 1111 1334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHHH
Q 009967 278 GNSLISFYAKCGSMEDSLLVFDKLTE-----RN----IVTWNAVICGYAQNGR--------------------GEEAIEF 328 (521)
Q Consensus 278 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~A~~~ 328 (521)
+..+..+|...|++++|...+++..+ ++ ..++..+...|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 55555566666666666666655543 11 2355556666666666 6666666
Q ss_pred HHHHHH----CCCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC----hhHHHHHHHHHHhcCCHHHHHHH
Q 009967 329 FERMRI----NGIRPN-GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK----PEHYACMVDLLSRSGRFKEAKEF 399 (521)
Q Consensus 329 ~~~m~~----~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 399 (521)
+++... .+..|. ..++..+...+...|++++|...++++....+-.++ ..++..+..+|...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 665433 111111 224555556666666776666666665432221122 12556666666667777766666
Q ss_pred HhhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chHHHHHHHHHHhcCChHHHHHH
Q 009967 400 LYDLP----FDPG----IGFWKALLGGCQIHSNVELGEFAARRILALDPED------VSSYVMLSNALSVAGKWDNVSNI 465 (521)
Q Consensus 400 ~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~ 465 (521)
+++.. ..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|...
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 65531 0111 2355556666666677777777777666643321 44666667777777777777766
Q ss_pred HHHHHh
Q 009967 466 RREMKE 471 (521)
Q Consensus 466 ~~~m~~ 471 (521)
+++..+
T Consensus 330 ~~~al~ 335 (406)
T 3sf4_A 330 AEKHLE 335 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=4.8e-14 Score=136.86 Aligned_cols=263 Identities=12% Similarity=0.046 Sum_probs=178.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHHhhcchHHHHHHHHHHHHc----C-CCCChhH
Q 009967 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH-----STLPCAIIAAANIAALGMGKSFHACAVKF----L-GKLDVFV 277 (521)
Q Consensus 208 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 277 (521)
+..+...+...|++++|...|+++.+.+ |+. ..+..+..++...|+++.|...++.+.+. + ......+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3344555566666666666666665542 332 24455555666666666666666655443 1 1113455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC-----C----ChhHHHHHHHHHHHcCC-----------------hHHHHHHHHH
Q 009967 278 GNSLISFYAKCGSMEDSLLVFDKLTE-----R----NIVTWNAVICGYAQNGR-----------------GEEAIEFFER 331 (521)
Q Consensus 278 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~-----------------~~~A~~~~~~ 331 (521)
+..+..+|...|++++|...|++..+ . ...++..+...|...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 66777778888888888888777653 1 23467777888888888 8888888877
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhh
Q 009967 332 MRIN----GIRP-NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK----PEHYACMVDLLSRSGRFKEAKEFLYD 402 (521)
Q Consensus 332 m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (521)
..+. +-.| ...++..+...+...|++++|...+++.....+-..+ ..++..+..+|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6441 1112 1236777777888889999999888887643321122 22677888889999999999988876
Q ss_pred CC-C---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967 403 LP-F---DPG----IGFWKALLGGCQIHSNVELGEFAARRILALDPE------DVSSYVMLSNALSVAGKWDNVSNIRRE 468 (521)
Q Consensus 403 ~~-~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (521)
.. . ..+ ..++..+...+...|++++|...++++++..+. ...++..++.+|...|++++|...+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 42 1 111 346777888899999999999999999886433 245888899999999999999999998
Q ss_pred HHhC
Q 009967 469 MKEK 472 (521)
Q Consensus 469 m~~~ 472 (521)
..+.
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.56 E-value=7.1e-13 Score=112.88 Aligned_cols=165 Identities=15% Similarity=0.048 Sum_probs=137.4
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHH
Q 009967 305 NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMV 384 (521)
Q Consensus 305 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 384 (521)
++..|..+...|...|++++|+..|++..+.. +-+..++..+..++...|++++|...+..+....+ .+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT--TSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--hhHHHHHHHH
Confidence 45678888888888899999999998887753 23556788888888889999999998888865554 4556777788
Q ss_pred HHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHH
Q 009967 385 DLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462 (521)
Q Consensus 385 ~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 462 (521)
..+...++++.|...+.+.. . +.+...+..+...+...|++++|++.|+++++.+|+++.+|..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88888999999998887742 2 445678888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 009967 463 SNIRREMKEK 472 (521)
Q Consensus 463 ~~~~~~m~~~ 472 (521)
+..|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9999998765
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=8.6e-14 Score=130.64 Aligned_cols=263 Identities=13% Similarity=0.090 Sum_probs=186.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHHhhcchHHHHHHHHHHHHc----CCC-CChhH
Q 009967 208 WNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNH-----STLPCAIIAAANIAALGMGKSFHACAVKF----LGK-LDVFV 277 (521)
Q Consensus 208 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 277 (521)
+......+...|++++|...|+++.... |+. ..+..+...+...|+++.|...++.+.+. +.. ....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444556666677777777776666642 332 34555666666667777776666665432 111 12456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHHH
Q 009967 278 GNSLISFYAKCGSMEDSLLVFDKLTE-----RN----IVTWNAVICGYAQNGR--------------------GEEAIEF 328 (521)
Q Consensus 278 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~A~~~ 328 (521)
+..+...+...|++++|...+++..+ ++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 67778888888888888888887653 22 2377778888888888 8888888
Q ss_pred HHHHHHC----CCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC----hhHHHHHHHHHHhcCCHHHHHHH
Q 009967 329 FERMRIN----GIRP-NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK----PEHYACMVDLLSRSGRFKEAKEF 399 (521)
Q Consensus 329 ~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 399 (521)
+++.... +..| ...++..+...+...|++++|...++++....+..++ ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8876541 1112 1236777788889999999999999887633221122 23678889999999999999999
Q ss_pred HhhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CchHHHHHHHHHHhcCChHHHHHH
Q 009967 400 LYDLP----FDPG----IGFWKALLGGCQIHSNVELGEFAARRILALDPE------DVSSYVMLSNALSVAGKWDNVSNI 465 (521)
Q Consensus 400 ~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~ 465 (521)
+++.. ..++ ..++..+...+...|++++|...++++++..|. ...++..++.+|.+.|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 88742 1122 446777888899999999999999999886543 245788999999999999999999
Q ss_pred HHHHHhC
Q 009967 466 RREMKEK 472 (521)
Q Consensus 466 ~~~m~~~ 472 (521)
+++..+.
T Consensus 326 ~~~a~~~ 332 (338)
T 3ro2_A 326 AEKHLEI 332 (338)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9998764
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=3.5e-14 Score=129.48 Aligned_cols=241 Identities=12% Similarity=-0.012 Sum_probs=142.8
Q ss_pred CChHHHHHHHHHhHHCCCC---CChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHH
Q 009967 87 HHYEEAIYLFSRMLLLNIR---PSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEAT 163 (521)
Q Consensus 87 g~~~~A~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 163 (521)
|++++|+..|+++.+.... .+...+..+...+...|++++|...++.+.+.. +.+...+..+..+|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4444555555544443110 122334444444444455555555555444432 223444444444444444444444
Q ss_pred HHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhH
Q 009967 164 RVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTL 243 (521)
Q Consensus 164 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 243 (521)
..|+++.+ +...+..++..+..+|...|++++|...|+++... .|+....
T Consensus 98 ~~~~~al~----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~ 147 (275)
T 1xnf_A 98 EAFDSVLE----------------------------LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFR 147 (275)
T ss_dssp HHHHHHHH----------------------------HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHh----------------------------cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHH
Confidence 44443321 00124566777777777777777777777777764 3555555
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------hhHHHHHHHHH
Q 009967 244 PCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERN-------IVTWNAVICGY 316 (521)
Q Consensus 244 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~ 316 (521)
...+..+...|+++.|...+......... +...+ .++..+...++.++|...+....+.+ ..+|..+...|
T Consensus 148 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 225 (275)
T 1xnf_A 148 SLWLYLAEQKLDEKQAKEVLKQHFEKSDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYY 225 (275)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHH
Confidence 55555556667788888777777665433 33333 36777778888899999998887632 46788889999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Q 009967 317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364 (521)
Q Consensus 317 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 364 (521)
...|++++|...|+++.... |+.. .....++...|++++|.+.+
T Consensus 226 ~~~g~~~~A~~~~~~al~~~--p~~~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 226 LSLGDLDSATALFKLAVANN--VHNF--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHTTCHHHHHHHHHHHHTTC--CTTC--HHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHhCC--chhH--HHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999998753 5332 22244667788888888776
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.54 E-value=1.3e-13 Score=135.95 Aligned_cols=208 Identities=11% Similarity=-0.027 Sum_probs=175.1
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHH
Q 009967 256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSM-EDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFER 331 (521)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~ 331 (521)
++.+...++....... .+...+..+..++...|++ ++|.+.|++..+ .+...|..+...|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444433322 3677888888889999999 999999998864 3467899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhh---------ccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhc--------CCHH
Q 009967 332 MRINGIRPNGVTLLGLLWACNHT---------GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS--------GRFK 394 (521)
Q Consensus 332 m~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 394 (521)
..+. .|+...+..+..++... |++++|...++++....+ .+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV--LDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9875 48878888898999998 999999999999986654 4577899999999998 9999
Q ss_pred HHHHHHhhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHH
Q 009967 395 EAKEFLYDLP-FDP----GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRRE 468 (521)
Q Consensus 395 ~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (521)
+|.+.|++.. ..| +...|..+..++...|++++|++.|+++++.+|+++.++..++.++...|++++|+..+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999998853 345 7789999999999999999999999999999999999999999999999999999975543
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=6.1e-13 Score=128.63 Aligned_cols=95 Identities=12% Similarity=0.103 Sum_probs=57.1
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCC----hhhHHHHHHHHcCCCChHHHHHHHHHHHHh----CCCC-cHH
Q 009967 74 VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS----EFTFGSVIPSSTALEDLNLGKQLHAWATKV----GLQS-NVF 144 (521)
Q Consensus 74 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 144 (521)
..+......+...|++++|...|++..+.+ +.+ ...+..+...+...|++++|...++.+.+. +..| ...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 344556666777777777777777777653 222 235556666667777777777777765543 1111 234
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhhcC
Q 009967 145 VGSAILDLYIKLSSIEEATRVFEDT 169 (521)
Q Consensus 145 ~~~~l~~~~~~~g~~~~a~~~~~~~ 169 (521)
++..+...|...|++++|...+++.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~a 113 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRH 113 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555666666666666666665554
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.49 E-value=8.8e-11 Score=119.08 Aligned_cols=407 Identities=10% Similarity=0.000 Sum_probs=272.9
Q ss_pred HHHHHHHhhcCCCchh----hhhhcccCCChhHHHHHhccCCC---CCcccHHHHHHHHHhcCC---hHHHHHHHHHhHH
Q 009967 32 QKASVQKLETPAIRTD----SVSCGSESDKFSSVHQVFDEVPD---LNVVSATTIIGRFAKQHH---YEEAIYLFSRMLL 101 (521)
Q Consensus 32 ~~~~~~~~~~g~~~~~----l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~ 101 (521)
..+-..+.+.. ...+ +++.+.+.|+++.|..+|+++.. .....|...+..-.+.|+ ++.+..+|++...
T Consensus 53 ~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~ 131 (679)
T 4e6h_A 53 GKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS 131 (679)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence 34444444544 4454 88888888999999999988653 355678888888888888 9999999999987
Q ss_pred CC-CCCChhhHHHHHHHHcCCCCh--------HHHHHHHHHHHH-hCC-CC-cHHHHHHHHHHHHc---------CCCHH
Q 009967 102 LN-IRPSEFTFGSVIPSSTALEDL--------NLGKQLHAWATK-VGL-QS-NVFVGSAILDLYIK---------LSSIE 160 (521)
Q Consensus 102 ~~-~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~g~~~ 160 (521)
.. .+|+...|...+....+.++. +.+.++|+..+. .|. .+ +...|...+..... .++++
T Consensus 132 ~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~ 211 (679)
T 4e6h_A 132 KELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ 211 (679)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence 53 137888887776654433332 345578887665 365 44 35678777766543 34577
Q ss_pred HHHHHhhcCCC-CCc---hhH---HHHHHHHH----------cCCCHHHHHHHHhh-------CCC--------------
Q 009967 161 EATRVFEDTHN-PNV---VSY---TTMICGLL----------KRERFEDALKLFQE-------MPH-------------- 202 (521)
Q Consensus 161 ~a~~~~~~~~~-~~~---~~~---~~li~~~~----------~~g~~~~a~~~~~~-------~~~-------------- 202 (521)
.+..+|+++.. |.. .+| ..+...+. ...+++.|...+.+ +.+
T Consensus 212 ~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~ 291 (679)
T 4e6h_A 212 YIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNL 291 (679)
T ss_dssp HHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTS
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccC
Confidence 88899988876 321 222 22222110 01123334444433 111
Q ss_pred C--C------hhHHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHH-HHHHHH
Q 009967 203 R--N------VVSWNAMIGGYSQTG-------RNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGK-SFHACA 266 (521)
Q Consensus 203 ~--~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~ 266 (521)
| + ...|...+..--..+ ..+.+..+|++.+.. ++-....|...+.-+...|+.+.|. .+++.+
T Consensus 292 p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rA 370 (679)
T 4e6h_A 292 PKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLG 370 (679)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 0 0 134555555433332 124456778887764 3346667777777778888888886 999999
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------------CC------------hhHHHHHHHHHHHcCC
Q 009967 267 VKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE-------------RN------------IVTWNAVICGYAQNGR 321 (521)
Q Consensus 267 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~~~~~ 321 (521)
....+ .+...+..++....+.|+++.|.++|+++.+ |+ ..+|...+....+.|+
T Consensus 371 i~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~ 449 (679)
T 4e6h_A 371 QQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG 449 (679)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC
Confidence 87654 3666777788888899999999999998764 21 2357777887788899
Q ss_pred hHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh-hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 009967 322 GEEAIEFFERMRIN-GIRPNGVTLLGLLWACNH-TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEF 399 (521)
Q Consensus 322 ~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 399 (521)
.+.|..+|.++.+. + .+....|...+..-.+ .++.+.|..+|+...+..+ .++..+...++.....|+.+.|..+
T Consensus 450 l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~l 526 (679)
T 4e6h_A 450 LAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSL 526 (679)
T ss_dssp HHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999998875 2 1223334333322223 3558999999999886654 4566677888888889999999999
Q ss_pred HhhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 009967 400 LYDLP-FDP----GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS 444 (521)
Q Consensus 400 ~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 444 (521)
|++.. ..| ....|...+..-...|+.+.+..+.+++.+..|+++.
T Consensus 527 feral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 527 FESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 99843 233 2347888888888899999999999999999997654
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=1.2e-10 Score=118.07 Aligned_cols=401 Identities=9% Similarity=-0.006 Sum_probs=278.3
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCC---hHHHHHHHHHHHHhC-CCCcHHHH
Q 009967 71 LNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALED---LNLGKQLHAWATKVG-LQSNVFVG 146 (521)
Q Consensus 71 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~ 146 (521)
.|...|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.++ ++.+..+|+..+... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 47889999999999999999999999999986 45667778888888788888 999999999998754 24888888
Q ss_pred HHHHHHHHcCCCH--------HHHHHHhhcCC------CC-CchhHHHHHHHHHc---------CCCHHHHHHHHhhCCC
Q 009967 147 SAILDLYIKLSSI--------EEATRVFEDTH------NP-NVVSYTTMICGLLK---------RERFEDALKLFQEMPH 202 (521)
Q Consensus 147 ~~l~~~~~~~g~~--------~~a~~~~~~~~------~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~~ 202 (521)
...+....+.++. +...++|+... .+ +...|...+.-... .++++.+..+|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8887766655543 33446776543 23 33567776655432 3457788999998775
Q ss_pred -C--Ch-hHHHH---HHHHH----------HhcCChHHHHHHHHHHHHC--CCC---CCh--------------------
Q 009967 203 -R--NV-VSWNA---MIGGY----------SQTGRNEEAVNLFIEMLRE--GLV---PNH-------------------- 240 (521)
Q Consensus 203 -~--~~-~~~~~---l~~~~----------~~~~~~~~a~~~~~~m~~~--~~~---p~~-------------------- 240 (521)
| +. .+|.. +.... -...+++.|...+.++... ++. |..
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 2 11 23322 21111 0112344455555554321 111 110
Q ss_pred hhHHHHHHHHHhhc-------chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH-HHHhhcCC--C-ChhHH
Q 009967 241 STLPCAIIAAANIA-------ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSL-LVFDKLTE--R-NIVTW 309 (521)
Q Consensus 241 ~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~--~-~~~~~ 309 (521)
..|...+.---..+ ..+.+..+|++++...+. ...+|...+..+.+.|+.++|. .+|++... | +...|
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lw 381 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHH
Confidence 11222222211111 123456778888877554 7788888888888899998996 99998875 3 44567
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHHhhccHHHHHHHHHHch
Q 009967 310 NAVICGYAQNGRGEEAIEFFERMRING---------IRPN------------GVTLLGLLWACNHTGLVEKGYSYFSQAK 368 (521)
Q Consensus 310 ~~li~~~~~~~~~~~A~~~~~~m~~~~---------~~p~------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 368 (521)
-..+...-+.|++++|.++|+++.... -.|+ ...|...+....+.|+.+.|+.+|.++.
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 778888889999999999999987631 0142 2357777777788899999999999997
Q ss_pred HhCCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---C
Q 009967 369 LEDPGMLKPEHYACMVDLLSRSG-RFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE---D 442 (521)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~ 442 (521)
+..+ ......|...+..-.+.| +.+.|..+|+... .+.+...|...+......|+.+.|..+|++++...|+ .
T Consensus 462 ~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~ 540 (679)
T 4e6h_A 462 RLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL 540 (679)
T ss_dssp HTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred HhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 4412 123345554444444554 5899999998742 2445667888888888899999999999999998873 5
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967 443 VSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474 (521)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 474 (521)
...|..++..-.+.|+.+.+..+.+++.+.-.
T Consensus 541 ~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 541 KMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 67889999999999999999999999987643
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=4.2e-12 Score=108.05 Aligned_cols=167 Identities=11% Similarity=0.022 Sum_probs=140.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009967 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350 (521)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 350 (521)
++.+|..+..+|.+.|++++|.+.|++..+ .++.+|..+..+|...|++++|...+....... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 567788889999999999999999998764 456788889999999999999999999987753 3355677777778
Q ss_pred HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHH
Q 009967 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELG 428 (521)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A 428 (521)
+...++++.+...+.++....+ .+...+..+..+|.+.|++++|++.+++.. . +.+..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNT--VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8899999999999999875554 456778889999999999999999998743 2 44577899999999999999999
Q ss_pred HHHHHHHHhcCCCCc
Q 009967 429 EFAARRILALDPEDV 443 (521)
Q Consensus 429 ~~~~~~~~~~~p~~~ 443 (521)
++.|+++++.+|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999998654
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.45 E-value=1.1e-12 Score=122.90 Aligned_cols=277 Identities=11% Similarity=0.012 Sum_probs=150.2
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHhCCCCc----HHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHc
Q 009967 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSN----VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLK 186 (521)
Q Consensus 111 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 186 (521)
+......+...|++++|...++.+.+.. +.+ ...+..+...|...|++++|...+++..+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------- 71 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT--------------- 71 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------
Confidence 3334445666777777777777777653 222 24556666666677777777666655421
Q ss_pred CCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHhhcc----
Q 009967 187 RERFEDALKLFQEMPH--RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGL-VPN----HSTLPCAIIAAANIAA---- 255 (521)
Q Consensus 187 ~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~---- 255 (521)
+...... ....++..+...+...|++++|...+++...... .++ ..++..+...+...|+
T Consensus 72 ---------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 142 (338)
T 3ro2_A 72 ---------LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 142 (338)
T ss_dssp ---------HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred ---------HhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCccccc
Confidence 1111111 1234566666777777777777777766554210 011 1133344444444444
Q ss_pred ----------------hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHH
Q 009967 256 ----------------LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIVTWNAVICGYA 317 (521)
Q Consensus 256 ----------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 317 (521)
++.|...++...+. +..... ....++..+...+.
T Consensus 143 ~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~----------------------------~~~~~~~~~~~~~~~~l~~~~~ 194 (338)
T 3ro2_A 143 PGPQDTGEFPEDVRNALQAAVDLYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHY 194 (338)
T ss_dssp SSCC----CCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhcCCHHHHHHHHHHHHHHHH
Confidence 44444333332211 000000 01224555555666
Q ss_pred HcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC----hhHHHHHHHHHH
Q 009967 318 QNGRGEEAIEFFERMRINGI-RPN----GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK----PEHYACMVDLLS 388 (521)
Q Consensus 318 ~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~ 388 (521)
..|++++|...+++..+... .++ ..++..+...+...|++++|...+++.....+...+ ..++..+..+|.
T Consensus 195 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 274 (338)
T 3ro2_A 195 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 274 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 66666666666665543100 011 225566666677777777777777665432211111 345667777777
Q ss_pred hcCCHHHHHHHHhhCC-C---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 009967 389 RSGRFKEAKEFLYDLP-F---DPG----IGFWKALLGGCQIHSNVELGEFAARRILALDP 440 (521)
Q Consensus 389 ~~g~~~~A~~~~~~~~-~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 440 (521)
..|++++|...+++.. . .++ ..++..+...+...|++++|...+++++++.+
T Consensus 275 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 275 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 7788777777776632 0 111 33666777788888899999999988888765
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=1e-12 Score=127.48 Aligned_cols=265 Identities=14% Similarity=0.068 Sum_probs=157.1
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCh----hhHHHHHHHHcCCCChHHHHHHHHHHHHhC-----CCCcHHH
Q 009967 75 SATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE----FTFGSVIPSSTALEDLNLGKQLHAWATKVG-----LQSNVFV 145 (521)
Q Consensus 75 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 145 (521)
.+..+...+...|++++|+..|++..+.+ +.+. ..+..+...+...|++++|...+++..+.. .+.....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34456667788888888888888887753 2222 356677777778888888888888776531 1223456
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcCCC-----C----CchhHHHHHHHHHcCCC-----------------HHHHHHHHhh
Q 009967 146 GSAILDLYIKLSSIEEATRVFEDTHN-----P----NVVSYTTMICGLLKRER-----------------FEDALKLFQE 199 (521)
Q Consensus 146 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~ 199 (521)
+..+...|...|++++|...+++..+ . ...++..+...|...|+ +++|++.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 67777778888888888887766543 1 11234444444555555 4444444443
Q ss_pred CCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcC
Q 009967 200 MPH-----R----NVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFL 270 (521)
Q Consensus 200 ~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 270 (521)
..+ . ...++..+...|...|++++|...+++..... ++ .+
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~-----------------------------~~ 257 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA--RE-----------------------------FG 257 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH-----------------------------HT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--Hh-----------------------------cC
Confidence 321 0 11244444555555555555555554443311 00 00
Q ss_pred C-CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----C
Q 009967 271 G-KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE-----RN----IVTWNAVICGYAQNGRGEEAIEFFERMRIN----G 336 (521)
Q Consensus 271 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~ 336 (521)
. .....++..+..+|...|++++|...|++..+ .+ ..++..+...+...|++++|...+++.... +
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 0 00122556666777777777777777766553 11 346667777777888888888887776542 1
Q ss_pred CCC-CHHHHHHHHHHHHhhccHHHHHHHHHHchHhC
Q 009967 337 IRP-NGVTLLGLLWACNHTGLVEKGYSYFSQAKLED 371 (521)
Q Consensus 337 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 371 (521)
..+ ...++..+..++...|++++|...+++.....
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 111 12366677777888888888888888776443
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=3.6e-11 Score=111.55 Aligned_cols=217 Identities=9% Similarity=0.009 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHH-------hhcch-------HHHHHHHHHHHHc-CCCCChhHHHHHHHHHH
Q 009967 222 EEAVNLFIEMLREGLVPNHSTLPCAIIAAA-------NIAAL-------GMGKSFHACAVKF-LGKLDVFVGNSLISFYA 286 (521)
Q Consensus 222 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 286 (521)
++|..+|++..... +-+...|......+. ..|++ +.|..+++.+++. .+ -+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 45666666666532 223334444444333 23443 5555555555552 22 24455666666666
Q ss_pred hcCCHHHHHHHHhhcCC--CC-hh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhhccHHHHH
Q 009967 287 KCGSMEDSLLVFDKLTE--RN-IV-TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC-NHTGLVEKGY 361 (521)
Q Consensus 287 ~~g~~~~A~~~~~~~~~--~~-~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~ 361 (521)
+.|++++|.++|+++.+ |+ .. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666554 22 22 56666666666666666666666666532 12233333222221 1246666666
Q ss_pred HHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009967 362 SYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP----FDP--GIGFWKALLGGCQIHSNVELGEFAARRI 435 (521)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 435 (521)
.+|+++....+ .++..|..++..+.+.|++++|..+|++.. .+| ....|..++......|+.+.|..+++++
T Consensus 190 ~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666654443 244556666666666666666666666532 122 2445666666666666666666666666
Q ss_pred HhcCCCCc
Q 009967 436 LALDPEDV 443 (521)
Q Consensus 436 ~~~~p~~~ 443 (521)
.+..|+++
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 66666533
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.45 E-value=1.2e-12 Score=125.59 Aligned_cols=128 Identities=13% Similarity=0.053 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHchHh---CCC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-----CCC-HHH
Q 009967 343 TLLGLLWACNHTGLVEKGYSYFSQAKLE---DPG-MLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-----DPG-IGF 411 (521)
Q Consensus 343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-----~~~-~~~ 411 (521)
++..+..+|...|++++|...+++.... .+. +....++..+..+|.+.|++++|...+++.. . .|. ...
T Consensus 226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 305 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE 305 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444445555555555555555544321 011 1123345555555555555555555554421 0 111 112
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967 412 WKALLGGCQIHSN---VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 412 ~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 471 (521)
+..+...+...|+ +++|+.++++. ...|....++..++..|...|++++|...+++..+
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444555555 55555555554 22222444566667777777777777777666543
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=2.4e-12 Score=123.55 Aligned_cols=288 Identities=13% Similarity=0.056 Sum_probs=208.9
Q ss_pred HHcCCCHHHHHHHhhcCCC--------CCchhHHHHHHH--HHcCCCHHHHH-----------HHHhhCCC-C-ChhH--
Q 009967 153 YIKLSSIEEATRVFEDTHN--------PNVVSYTTMICG--LLKRERFEDAL-----------KLFQEMPH-R-NVVS-- 207 (521)
Q Consensus 153 ~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~--~~~~g~~~~a~-----------~~~~~~~~-~-~~~~-- 207 (521)
+.+.+++++|..+++++.+ ++...|..++.. ....++++.+. +.++.+.. + +...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 4578999999999988753 222233333322 11223333333 45554432 1 1111
Q ss_pred ----HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC----hhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCC-----
Q 009967 208 ----WNAMIGGYSQTGRNEEAVNLFIEMLREG-LVPN----HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL----- 273 (521)
Q Consensus 208 ----~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----- 273 (521)
+......+...|++++|...|++....- -.++ ..++..+..++...|+++.|...+..+.+.....
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 2235677889999999999999998741 1132 3567788899999999999999999988752221
Q ss_pred -ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC
Q 009967 274 -DVFVGNSLISFYAKCGSMEDSLLVFDKLTE-----RNI----VTWNAVICGYAQNGRGEEAIEFFERMRIN----GIRP 339 (521)
Q Consensus 274 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p 339 (521)
...+++.+..+|...|++++|...|++..+ ++. .++..+...|...|++++|...+++..+. +..|
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 235788889999999999999999998874 222 37888999999999999999999998762 3323
Q ss_pred -CHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCCh---hHHHHHHHHHHhcCC---HHHHHHHHhhCCCCCCH-HH
Q 009967 340 -NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP---EHYACMVDLLSRSGR---FKEAKEFLYDLPFDPGI-GF 411 (521)
Q Consensus 340 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~ 411 (521)
...++..+..++...|++++|...+++.........++ ..+..+...|...|+ +++|..++++....|+. ..
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence 35578889999999999999999999986432211222 235678888999999 89999999998644443 36
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 009967 412 WKALLGGCQIHSNVELGEFAARRILALDP 440 (521)
Q Consensus 412 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 440 (521)
+..+...|...|++++|...++++++...
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 77788889999999999999999988543
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=5.6e-13 Score=123.75 Aligned_cols=236 Identities=15% Similarity=0.122 Sum_probs=122.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHc------CC
Q 009967 205 VVSWNAMIGGYSQTGRNEEAVNLFIEMLRE-------GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKF------LG 271 (521)
Q Consensus 205 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 271 (521)
..++..+...+...|++++|..+++++... ........+..+...+...|+++.|...++.+.+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 467888888889999999999998888762 11112233444445555555555555555554432 11
Q ss_pred -CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHH
Q 009967 272 -KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN------GIRP-NGVT 343 (521)
Q Consensus 272 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~ 343 (521)
..... ++..+...|...|++++|...++++.+. +-.| ....
T Consensus 107 ~~~~~~-------------------------------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 107 HPAVAA-------------------------------TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp CHHHHH-------------------------------HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ChHHHH-------------------------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 11123 3444445555555555555555554432 1112 1224
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHchHhC-----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCC----------CCC
Q 009967 344 LLGLLWACNHTGLVEKGYSYFSQAKLED-----PGML-KPEHYACMVDLLSRSGRFKEAKEFLYDLP----------FDP 407 (521)
Q Consensus 344 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~ 407 (521)
+..+...+...|++++|..+++++.... +..| ...++..+..+|...|++++|.+.+++.. ..+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4455555556666666666665554220 1011 12345555666666666666666655431 001
Q ss_pred C-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967 408 G-------IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 408 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 471 (521)
. ...+..+...+...+.+.++...+++.....|..+.++..++.+|.+.|++++|..++++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 111222223344556666777777777777777888888889999999999999888888764
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=5.3e-11 Score=110.37 Aligned_cols=213 Identities=10% Similarity=0.019 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHH-------hcCCH-------HHHHHHHhhcCC---C-ChhHHHHHHHHHHH
Q 009967 257 GMGKSFHACAVKFLGKLDVFVGNSLISFYA-------KCGSM-------EDSLLVFDKLTE---R-NIVTWNAVICGYAQ 318 (521)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 318 (521)
+.|..+|+.+++..+. ++..|..++..+. +.|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5777888888886544 7778888887775 35885 899999998865 3 44589999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHH-hcCCHHH
Q 009967 319 NGRGEEAIEFFERMRINGIRPNG-V-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLS-RSGRFKE 395 (521)
Q Consensus 319 ~~~~~~A~~~~~~m~~~~~~p~~-~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 395 (521)
.|++++|..+|+++.+. .|+. . .|..++..+.+.|++++|..+|+++....+ .+...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT--CCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999984 4643 3 788889999999999999999999974443 34455554444432 3699999
Q ss_pred HHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967 396 AKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILAL---DPE-DVSSYVMLSNALSVAGKWDNVSNIRREM 469 (521)
Q Consensus 396 A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 469 (521)
|..+|++.. . +.+...|..++..+...|++++|+.+|++++.. .|+ ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998852 2 346778999999999999999999999999995 453 6778999999999999999999999998
Q ss_pred HhCCC
Q 009967 470 KEKGM 474 (521)
Q Consensus 470 ~~~g~ 474 (521)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 87644
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=2e-11 Score=103.53 Aligned_cols=161 Identities=13% Similarity=0.070 Sum_probs=98.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHH
Q 009967 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLS 388 (521)
Q Consensus 309 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (521)
|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++....+ .+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP--DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHH
Confidence 3334444444455555555444443321 12334444445555555555555555555543322 23445555555566
Q ss_pred hcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHH
Q 009967 389 RSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466 (521)
Q Consensus 389 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 466 (521)
..|++++|.+.+++.. .+.+...+..+...+...|++++|...++++++..|+++.++..++.++...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666555431 13345566777777788888888888888888888888888888888888888888888888
Q ss_pred HHHHhC
Q 009967 467 REMKEK 472 (521)
Q Consensus 467 ~~m~~~ 472 (521)
++..+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 887654
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.40 E-value=3.2e-10 Score=108.27 Aligned_cols=263 Identities=11% Similarity=-0.048 Sum_probs=166.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChh----hHHHHHHHHHhhcchHHHHHHHHHHHHcCCCC-C----hhHHHH
Q 009967 210 AMIGGYSQTGRNEEAVNLFIEMLREGLVPNHS----TLPCAIIAAANIAALGMGKSFHACAVKFLGKL-D----VFVGNS 280 (521)
Q Consensus 210 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~ 280 (521)
.....+...|++++|...+++........+.. .+..+...+...|+++.|...+....+..... + ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445566677777777777766543111111 23444555666777777777776665432111 1 223455
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHH
Q 009967 281 LISFYAKCGSMEDSLLVFDKLTE-------R----NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIR--P--NGVTLL 345 (521)
Q Consensus 281 l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p--~~~~~~ 345 (521)
+...+...|++++|...+++..+ + ....+..+...+...|++++|...+++.....-. + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 67777888888888888776653 1 1234566777788888888888888887653211 1 234566
Q ss_pred HHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHH-----HHHHHHHhcCCHHHHHHHHhhCC-CCCC-----HHHHHH
Q 009967 346 GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYA-----CMVDLLSRSGRFKEAKEFLYDLP-FDPG-----IGFWKA 414 (521)
Q Consensus 346 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~ 414 (521)
.+...+...|++++|...+++..........+..+. ..+..+...|++++|...+++.. ..|. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 777778888888888888888753321111111111 23344778888888888888753 1221 224566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC------CchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 415 LLGGCQIHSNVELGEFAARRILALDPE------DVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
+...+...|++++|...++++....+. ...++..++.++...|++++|...+++....
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 677788889999999888888774322 1236777788888889999998888887643
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.39 E-value=1.2e-11 Score=126.77 Aligned_cols=162 Identities=15% Similarity=0.182 Sum_probs=133.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHH
Q 009967 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN-GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMV 384 (521)
Q Consensus 306 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 384 (521)
..+|+.+...|.+.|++++|++.|++..+. .|+ ..++..+..++...|++++|...|+++.+..+ -+...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P--~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP--TFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 456777888888888888888888887774 344 56788888888888888888888888875554 3466788888
Q ss_pred HHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHH
Q 009967 385 DLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV 462 (521)
Q Consensus 385 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 462 (521)
.+|.+.|++++|++.|++. ...| +...|..+..++...|++++|++.|+++++++|+++.++..++.++...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 8888888888888888874 2344 4668889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 009967 463 SNIRREMKE 471 (521)
Q Consensus 463 ~~~~~~m~~ 471 (521)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887754
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.39 E-value=2.1e-11 Score=107.65 Aligned_cols=190 Identities=11% Similarity=-0.008 Sum_probs=112.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 009967 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE----RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPN-GVTLLGLL 348 (521)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll 348 (521)
++..+......+.+.|++++|...|++..+ ++...+..+..++...|++++|...+++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 445666666667777777777777766543 44555555666677777777777777776653 243 34566666
Q ss_pred HHHHhhccHHHHHHHHHHchHhCCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC---HHHHHHHHHHH
Q 009967 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKP-----EHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG---IGFWKALLGGC 419 (521)
Q Consensus 349 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~ 419 (521)
.++...|++++|...++++....+-.+.. ..|..+...+...|++++|++.+++. ...|+ ...|..+...+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 66677777777777777666444422211 34555666666666666666666653 33444 23455555555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
.. .+...++++..+.+.++..|... .....+.+++|+..+++..+.
T Consensus 164 ~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 164 YN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 33 23344555555555444443332 233445569999999997754
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.38 E-value=1.4e-10 Score=111.05 Aligned_cols=162 Identities=10% Similarity=0.026 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHchHhC---CCCCChhH
Q 009967 308 TWNAVICGYAQNGRGEEAIEFFERMRIN----GIRP-NGVTLLGLLWACNHTGLVEKGYSYFSQAKLED---PGMLKPEH 379 (521)
Q Consensus 308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~ 379 (521)
+++.+...|...|++++|...+++..+. +-.+ ...++..+..++...|++++|...+++..... +.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 3444444455555555555555444331 1000 11244445555555555555555555544200 11112334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC----C--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchHHHHH
Q 009967 380 YACMVDLLSRSGRFKEAKEFLYDLP----F--DPG-IGFWKALLGGCQIHSN---VELGEFAARRILALDPEDVSSYVML 449 (521)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~~~~~----~--~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l 449 (521)
+..+..+|.+.|++++|...+++.. . .|. ...+..+...+...++ +++|+..+++. ...|.....+..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHH
Confidence 5555555555555555555555421 0 121 1133333334444455 55555555542 1122234455566
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 009967 450 SNALSVAGKWDNVSNIRREMK 470 (521)
Q Consensus 450 ~~~~~~~g~~~~A~~~~~~m~ 470 (521)
+..|...|++++|...+++..
T Consensus 343 a~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 666666666666666666654
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.36 E-value=6.5e-11 Score=104.47 Aligned_cols=205 Identities=12% Similarity=0.019 Sum_probs=161.7
Q ss_pred CChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHH
Q 009967 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE--R-NIVTWNAVIC 314 (521)
Q Consensus 238 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 314 (521)
.|+..+......+...|+++.|...++.+.+..++++...+..+..++...|++++|...|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888899999999999999999999998756778888899999999999999999999875 3 4568899999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC---hhHHHHHH
Q 009967 315 GYAQNGRGEEAIEFFERMRINGIRPNG-------VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK---PEHYACMV 384 (521)
Q Consensus 315 ~~~~~~~~~~A~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 384 (521)
++...|++++|...+++..+.. +.+. ..+..+...+...|++++|...|+++.... |+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT---SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS---CHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC---CCcccHHHHHHHH
Confidence 9999999999999999998853 2234 457777788899999999999999987433 44 56788888
Q ss_pred HHHHhcCCH--HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 009967 385 DLLSRSGRF--KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL 453 (521)
Q Consensus 385 ~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 453 (521)
.+|...|+. +++.. +. ..+...+.... ....+.+++|+..++++++++|+++.+...+....
T Consensus 161 ~~~~~~~~~~~~~a~~----~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGADVLRKATP----LA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHGG----GT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh----cc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 888776654 22222 21 33344444333 34557799999999999999999988877776653
No 79
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.35 E-value=2.2e-11 Score=120.04 Aligned_cols=218 Identities=13% Similarity=-0.037 Sum_probs=125.1
Q ss_pred hHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh-HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhh
Q 009967 89 YEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL-NLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFE 167 (521)
Q Consensus 89 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 167 (521)
+++++..++...... +.+...+..+...+...|++ ++|++.|+..++.. +.+...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455556666554432 34566666677777777777 77777777777754 4446677777777777777777777776
Q ss_pred cCCC--CCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 009967 168 DTHN--PNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPC 245 (521)
Q Consensus 168 ~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 245 (521)
+..+ |+...+..+...+...+.- ....+.|++++|+..|++..+.. +.+...+..
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~----------------------~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 218 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTD----------------------SGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYI 218 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCS----------------------CHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccC----------------------ChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 6654 4434444444444444000 00000055555555555554432 122344444
Q ss_pred HHHHHHhh--------cchHHHHHHHHHHHHcCCC--CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHH
Q 009967 246 AIIAAANI--------AALGMGKSFHACAVKFLGK--LDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAV 312 (521)
Q Consensus 246 ll~~~~~~--------~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 312 (521)
+..++... |++++|...++.+.+..+. .+...+..+..+|...|++++|.+.|++..+ .+...+..+
T Consensus 219 lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l 298 (474)
T 4abn_A 219 LGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE 298 (474)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 44555554 5555555555555554331 2566667777777777777777777776653 334466666
Q ss_pred HHHHHHcCChHHHHHHHHH
Q 009967 313 ICGYAQNGRGEEAIEFFER 331 (521)
Q Consensus 313 i~~~~~~~~~~~A~~~~~~ 331 (521)
...+...|++++|.+.+.+
T Consensus 299 ~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 299 QQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 7777777777777665543
No 80
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=2.1e-12 Score=119.86 Aligned_cols=237 Identities=14% Similarity=0.054 Sum_probs=141.6
Q ss_pred chhHHHHHHHHHcCCCHHHHHHHHhhCCC--------C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC
Q 009967 174 VVSYTTMICGLLKRERFEDALKLFQEMPH--------R---NVVSWNAMIGGYSQTGRNEEAVNLFIEMLRE------GL 236 (521)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~ 236 (521)
..++..+...+...|++++|...|+++.+ . ...++..+...|...|++++|...+++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45688899999999999999999998764 1 2457888999999999999999999998764 11
Q ss_pred CC-ChhhHHHHHHHHHhhcchHHHHHHHHHHHHcC------CCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhH
Q 009967 237 VP-NHSTLPCAIIAAANIAALGMGKSFHACAVKFL------GKL-DVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVT 308 (521)
Q Consensus 237 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 308 (521)
.| ....+..+...+...|+++.|...+..+.+.. ..| ....+..+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~------------------------- 161 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL------------------------- 161 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------------------------
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-------------------------
Confidence 12 34556677778888888888888888776541 111 2233344444
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHchHhC------CCCC
Q 009967 309 WNAVICGYAQNGRGEEAIEFFERMRIN------GIRPN-GVTLLGLLWACNHTGLVEKGYSYFSQAKLED------PGML 375 (521)
Q Consensus 309 ~~~li~~~~~~~~~~~A~~~~~~m~~~------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~ 375 (521)
.+...|++++|..+++++.+. +..|+ ..++..+..++...|++++|...++++.... ...+
T Consensus 162 ------~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 162 ------LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp ------HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ------HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 444445555555555444332 11122 2245555555666666666666666554211 0011
Q ss_pred C-hh------HHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967 376 K-PE------HYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPE 441 (521)
Q Consensus 376 ~-~~------~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 441 (521)
. .. .+..+...+...+.+.++...+.... ..| ...++..+...|...|++++|.+.|++++++.|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 11 12222233334445555555555543 123 3447888888999999999999999999987763
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=1.2e-10 Score=98.69 Aligned_cols=168 Identities=13% Similarity=0.040 Sum_probs=143.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009967 275 VFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWAC 351 (521)
Q Consensus 275 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 351 (521)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566778889999999999999999886 356788899999999999999999999988753 34677888888999
Q ss_pred HhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHH
Q 009967 352 NHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGE 429 (521)
Q Consensus 352 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~ 429 (521)
...|++++|...++++....+ .+...+..+..++...|++++|.+.+++.. . +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP--INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc--HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999876654 467788899999999999999999998843 2 446778999999999999999999
Q ss_pred HHHHHHHhcCCCCchH
Q 009967 430 FAARRILALDPEDVSS 445 (521)
Q Consensus 430 ~~~~~~~~~~p~~~~~ 445 (521)
..++++++..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999988876543
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=5.7e-11 Score=113.71 Aligned_cols=299 Identities=13% Similarity=0.124 Sum_probs=213.2
Q ss_pred CCCcHHHHHHHHHHH--HcCCCHHHHHHHhhcCCC--------CCchhHHHHHHHH--H---cCCCHH---------HHH
Q 009967 139 LQSNVFVGSAILDLY--IKLSSIEEATRVFEDTHN--------PNVVSYTTMICGL--L---KRERFE---------DAL 194 (521)
Q Consensus 139 ~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~--~---~~g~~~---------~a~ 194 (521)
+.|+..+-+.+-.-| ...+++++|..+++++.. .+...|..++..- . .....+ +..
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 446666666666665 789999999999887643 2233334443321 1 111122 333
Q ss_pred HHHhhCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC----hhhHHHHHHHHHhhcchHHHHHHHH
Q 009967 195 KLFQEMPHRNV-----VSWNAMIGGYSQTGRNEEAVNLFIEMLREG-LVPN----HSTLPCAIIAAANIAALGMGKSFHA 264 (521)
Q Consensus 195 ~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~ 264 (521)
+..+....+.. ..+......+...|++++|+..|++..... -.++ ..++..+..++...|+++.|...+.
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 33333222211 134445667789999999999999987642 1133 3467778889999999999999999
Q ss_pred HHHHcCCC------CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHH
Q 009967 265 CAVKFLGK------LDVFVGNSLISFYAKCGSMEDSLLVFDKLTE-----RN----IVTWNAVICGYAQNGRGEEAIEFF 329 (521)
Q Consensus 265 ~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~ 329 (521)
.+.+.... ....+++.+..+|...|++++|.+.|++..+ ++ ..++..+..+|...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 98764221 1245678889999999999999999988764 22 247888999999999999999999
Q ss_pred HHHHH-----CCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC---hhHHHHHHHHHHhcCC---HHHHHH
Q 009967 330 ERMRI-----NGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK---PEHYACMVDLLSRSGR---FKEAKE 398 (521)
Q Consensus 330 ~~m~~-----~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~ 398 (521)
++... .. +....++..+..++...|++++|...+++.........+ ...+..+...|...|+ +.+|..
T Consensus 246 ~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 246 QKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99876 32 223567888899999999999999999998755433222 2356667777888888 899999
Q ss_pred HHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009967 399 FLYDLPFDPGIG-FWKALLGGCQIHSNVELGEFAARRILAL 438 (521)
Q Consensus 399 ~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (521)
.+++....|+.. .+..+...|...|++++|...|+++++.
T Consensus 325 ~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 325 YFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999866444433 6677888899999999999999999874
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=7.6e-09 Score=98.64 Aligned_cols=268 Identities=12% Similarity=-0.038 Sum_probs=150.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHHCCCCCChh----hHHHHHHHHcCCCChHHHHHHHHHHHHhCC-CCc----HHHHH
Q 009967 77 TTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEF----TFGSVIPSSTALEDLNLGKQLHAWATKVGL-QSN----VFVGS 147 (521)
Q Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~ 147 (521)
......+...|++++|...+++........+.. .+..+...+...|++++|...+++..+... ..+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344455667888999998888877653222221 344555566777888888888887765321 111 22345
Q ss_pred HHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCC----ChhHHHHHHHHHHhcCChHH
Q 009967 148 AILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHR----NVVSWNAMIGGYSQTGRNEE 223 (521)
Q Consensus 148 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~ 223 (521)
.+...+...|++++|...+++.. +.......+ ....+..+...+...|++++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al------------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 153 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAF------------------------QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 153 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH------------------------HHHHHhccccCcHHHHHHHHHHHHHHHhcCHHH
Confidence 56667777788877777765542 222222211 12345556677777777777
Q ss_pred HHHHHHHHHHCCCCC----ChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCh-hHHH-----HHHHHHHhcCCHHH
Q 009967 224 AVNLFIEMLREGLVP----NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV-FVGN-----SLISFYAKCGSMED 293 (521)
Q Consensus 224 a~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~ 293 (521)
|...+++........ ...++..+...+...|+++.|...++........++. ..+. ..+..+...|++++
T Consensus 154 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 233 (373)
T 1hz4_A 154 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 233 (373)
T ss_dssp HHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHH
Confidence 777777766532111 1123445555666666777776666666543222111 1111 22334667777777
Q ss_pred HHHHHhhcCCCCh-------hHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhhccHHHHH
Q 009967 294 SLLVFDKLTERNI-------VTWNAVICGYAQNGRGEEAIEFFERMRIN----GIRPNG-VTLLGLLWACNHTGLVEKGY 361 (521)
Q Consensus 294 A~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~~~~~~a~ 361 (521)
|...+++..++.. ..+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|.
T Consensus 234 A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 313 (373)
T 1hz4_A 234 AANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ 313 (373)
T ss_dssp HHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 7777777765321 13445566666677777777776665431 111111 13334444555566666666
Q ss_pred HHHHHch
Q 009967 362 SYFSQAK 368 (521)
Q Consensus 362 ~~~~~~~ 368 (521)
..+++..
T Consensus 314 ~~l~~al 320 (373)
T 1hz4_A 314 RVLLDAL 320 (373)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.24 E-value=6e-10 Score=100.53 Aligned_cols=205 Identities=9% Similarity=-0.037 Sum_probs=140.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 009967 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RN----IVTWNAVICGYAQNGRGEEAIEFFERMRINGI-RPN-GVTLL 345 (521)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~-~~~~~ 345 (521)
+...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|...|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 455666677777788888888888887764 32 35677777778888888888888888776421 122 33556
Q ss_pred HHHHHHHh--------hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHH
Q 009967 346 GLLWACNH--------TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLG 417 (521)
Q Consensus 346 ~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 417 (521)
.+..++.. .|++++|...|+++....+-.+. ....+.......+.. ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL--VDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT--HHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh--HHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 66666766 78888888888887755543222 222221111111111 112456778
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCccCCcceEEE
Q 009967 418 GCQIHSNVELGEFAARRILALDPED---VSSYVMLSNALSVA----------GKWDNVSNIRREMKEKGMTRVPGCSWIE 484 (521)
Q Consensus 418 ~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~~~~~~~~~~ 484 (521)
.+...|++++|+..|+++++..|++ +.++..++.+|... |++++|...++++.+...
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p---------- 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP---------- 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----------
Confidence 8999999999999999999999984 45889999999877 899999999999876531
Q ss_pred ECCEEEEEecCCCCCCCcHHHHHHHHHHHHHHHh
Q 009967 485 IKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518 (521)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 518 (521)
.+|........++.+...+++
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHHHHHH
Confidence 345566777777777776654
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.22 E-value=7.6e-10 Score=101.63 Aligned_cols=174 Identities=9% Similarity=-0.035 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCC-CC----
Q 009967 276 FVGNSLISFYAKCGSMEDSLLVFDKLTE-----RN----IVTWNAVICGYAQN-GRGEEAIEFFERMRINGIR-PN---- 340 (521)
Q Consensus 276 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~~~~-p~---- 340 (521)
.+++.+..+|.+.|++++|...|++..+ .+ ..+++.+...|... |++++|+..|++..+.... .+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 3455566666666666666666655543 11 23566777777775 8888888888876652100 01
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHH----
Q 009967 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP-----EHYACMVDLLSRSGRFKEAKEFLYDL-PFDPGIG---- 410 (521)
Q Consensus 341 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~---- 410 (521)
..++..+...+...|++++|...|+++....+-.+.. ..|..+..++...|++++|...+++. ...|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 2456777777888888888888888876444322222 14666777788888888888888774 2344322
Q ss_pred --HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 009967 411 --FWKALLGGCQ--IHSNVELGEFAARRILALDPEDVSSYVML 449 (521)
Q Consensus 411 --~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 449 (521)
.+..++.++. ..+++++|+..|+++..++|.....+..+
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 2334444443 34678888888877777777544444333
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.19 E-value=3.5e-10 Score=102.97 Aligned_cols=221 Identities=13% Similarity=0.100 Sum_probs=152.2
Q ss_pred HhhcchHHHHHHHHHHHHc-------CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----------CChhHHHHH
Q 009967 251 ANIAALGMGKSFHACAVKF-------LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE-----------RNIVTWNAV 312 (521)
Q Consensus 251 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l 312 (521)
...|+++.|..+++++.+. ..+....++..+..+|...|++++|...|+++.+ ....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776652 2223466788889999999999999999988763 123478888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHchHh----C-CCCC-ChhH
Q 009967 313 ICGYAQNGRGEEAIEFFERMRIN------GIRP-NGVTLLGLLWACNHTGLVEKGYSYFSQAKLE----D-PGML-KPEH 379 (521)
Q Consensus 313 i~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~-~~~~ 379 (521)
...|...|++++|...+++.... .-.| ...++..+...+...|++++|..+++++... . +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998763 1123 3457788888899999999999999988644 1 1112 3457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC----------CCCC-HHHHHHHHHHHHhcC------CHHHHHHHHHHHHhcCCCC
Q 009967 380 YACMVDLLSRSGRFKEAKEFLYDLP----------FDPG-IGFWKALLGGCQIHS------NVELGEFAARRILALDPED 442 (521)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~p~~ 442 (521)
+..+..+|.+.|++++|...+++.. ..+. ...|..+...+...+ .+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8889999999999999999987642 1222 223333333333322 2333444444333344556
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967 443 VSSYVMLSNALSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 471 (521)
+.++..++.+|...|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77899999999999999999999998765
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.16 E-value=1.4e-09 Score=98.03 Aligned_cols=203 Identities=9% Similarity=-0.046 Sum_probs=142.9
Q ss_pred CChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----hhHH
Q 009967 238 PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD--VFVGNSLISFYAKCGSMEDSLLVFDKLTE--RN----IVTW 309 (521)
Q Consensus 238 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~ 309 (521)
.+...+......+...|+++.|...++.+.+..+... ...+..+..+|.+.|++++|...|++..+ |+ ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3456677778889999999999999999998765421 56788899999999999999999999875 32 3467
Q ss_pred HHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHH
Q 009967 310 NAVICGYAQ--------NGRGEEAIEFFERMRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHY 380 (521)
Q Consensus 310 ~~li~~~~~--------~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 380 (521)
..+..++.. .|++++|...|+++.+.. |+.. ....+.... .....+ ...+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~-------~~~~~~------------~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIR-------ELRAKL------------ARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHH-------HHHHHH------------HHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHH-------HHHHHH------------HHHH
Confidence 778888888 999999999999998753 4432 221111100 000000 1125
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCch-
Q 009967 381 ACMVDLLSRSGRFKEAKEFLYDLP-FDPG----IGFWKALLGGCQIH----------SNVELGEFAARRILALDPEDVS- 444 (521)
Q Consensus 381 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~- 444 (521)
..+..+|.+.|++++|+..|+++. ..|+ ...+..+..++... |++++|+..|+++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 566777888888888888887742 2333 34666666677655 8999999999999999998764
Q ss_pred --HHHHHHHHHHhcCChHH
Q 009967 445 --SYVMLSNALSVAGKWDN 461 (521)
Q Consensus 445 --~~~~l~~~~~~~g~~~~ 461 (521)
+...+...+.+.+++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 34445555555554443
No 88
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.16 E-value=4.9e-10 Score=114.99 Aligned_cols=163 Identities=13% Similarity=0.110 Sum_probs=134.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 009967 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP-NGVTLLGLLW 349 (521)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~ 349 (521)
+...++.|..+|.+.|++++|++.|++..+ .+..+|..+..+|.+.|++++|+..|++..+. .| +...+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 466788888889999999999999988764 34678888999999999999999999998874 35 4668888888
Q ss_pred HHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 009967 350 ACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVEL 427 (521)
Q Consensus 350 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 427 (521)
++...|++++|.+.|+++.+..+ -+...|..+..+|.+.|++++|++.|++. ...| +...+..+...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P--~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINP--AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999998876554 45678889999999999999999999874 3345 46688889999999999999
Q ss_pred HHHHHHHHHhcCC
Q 009967 428 GEFAARRILALDP 440 (521)
Q Consensus 428 A~~~~~~~~~~~p 440 (521)
|.+.+++++++.|
T Consensus 164 A~~~~~kal~l~~ 176 (723)
T 4gyw_A 164 YDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh
Confidence 9999998887543
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.16 E-value=4.3e-09 Score=92.48 Aligned_cols=183 Identities=10% Similarity=-0.019 Sum_probs=124.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HH
Q 009967 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNI----VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG----VT 343 (521)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~ 343 (521)
+...+..+...+.+.|++++|...|+++.+ |+. ..+..+..+|.+.|++++|...|+++.+.. |+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 344556667778888888888888888764 332 467777888888888888888888887743 332 13
Q ss_pred HHHHHHHHHh------------------hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 009967 344 LLGLLWACNH------------------TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF 405 (521)
Q Consensus 344 ~~~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 405 (521)
+..+..++.. .|++++|...|+++....+-.+. .+.+......-.+..
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~--a~~a~~~l~~~~~~~------------ 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY--TTDATKRLVFLKDRL------------ 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT--HHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh--HHHHHHHHHHHHHHH------------
Confidence 4444444443 45677777777777644442222 222111110000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 009967 406 DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDV---SSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475 (521)
Q Consensus 406 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (521)
......+...+...|++++|+..|+++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00123456678899999999999999999999876 67999999999999999999999998877654
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.15 E-value=2.1e-09 Score=85.46 Aligned_cols=127 Identities=19% Similarity=0.225 Sum_probs=84.8
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHh
Q 009967 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQI 421 (521)
Q Consensus 344 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 421 (521)
+..+...+...|++++|..+++++....+ .+...+..+...+...|++++|...++++. .+.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC--cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 34444555555566666666555543322 234455555666666666666666665532 13345566677777788
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 422 HSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 422 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
.|++++|...++++....|+++.++..++.++...|++++|...++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 888888888888888888888888888888888888888888888887654
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.14 E-value=4.6e-09 Score=94.69 Aligned_cols=181 Identities=13% Similarity=-0.014 Sum_probs=126.5
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009967 259 GKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTER-----NIVTWNAVICGYAQNGRGEEAIEFFERMR 333 (521)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 333 (521)
+...++...+.+ .++...+..+..++...|++++|++++.+..+. +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555555444 334455567778888889999999998887542 34567778888999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHHH--Hhhc--cHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 009967 334 INGIRP-----NGVTLLGLLWAC--NHTG--LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP 404 (521)
Q Consensus 334 ~~~~~p-----~~~~~~~ll~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 404 (521)
+. .| +..+...+..++ ...| +++.|..+|+++.... |+......+..++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 74 46 356666666663 3334 8899999999986333 442233344448889999999999987643
Q ss_pred C-----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 009967 405 F-----------DP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYV 447 (521)
Q Consensus 405 ~-----------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 447 (521)
. .| ++.+...++......|+ +|.++++++.+..|++|.+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 1 14 34456456555555676 889999999999998886643
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.12 E-value=1.6e-08 Score=91.12 Aligned_cols=175 Identities=10% Similarity=-0.043 Sum_probs=135.6
Q ss_pred HHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHchH
Q 009967 294 SLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRP-NGVTLLGLLWACNHTGLVEKGYSYFSQAKL 369 (521)
Q Consensus 294 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 369 (521)
|...|++..+ ++..++..+..++...|++++|++++.+....+-.+ +...+..++..+.+.|+.+.|.+.+++|..
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6788887764 455566788899999999999999999987655322 445777888899999999999999999964
Q ss_pred hCCCCC-----ChhHHHHHHHH--HHhcC--CHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 009967 370 EDPGML-----KPEHYACMVDL--LSRSG--RFKEAKEFLYDLPF-DPGIGFWKALLGGCQIHSNVELGEFAARRILAL- 438 (521)
Q Consensus 370 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 438 (521)
.. | +..+...|+.+ ....| ++.+|..+|+++.. .|+..+...++.++...|++++|.+.++.+.+.
T Consensus 165 ~~---~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 AI---EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HS---CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred cC---ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 33 5 24455555555 33344 99999999999753 455444455555889999999999999988775
Q ss_pred ---------CCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967 439 ---------DPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 439 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 473 (521)
+|+++.++..++......|+ +|.++++++++..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 58899999888877777887 8999999998754
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.09 E-value=3.8e-09 Score=96.01 Aligned_cols=164 Identities=12% Similarity=0.065 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CC
Q 009967 275 VFVGNSLISFYAKCGSMEDSLLVFDKLTE-------R----NIVTWNAVICGYAQNGRGEEAIEFFERMRIN------GI 337 (521)
Q Consensus 275 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------~~ 337 (521)
..++..+..+|...|++++|...|.++.+ + ...++..+...|...|++++|...++++.+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 44566677777777777777777776642 1 1346777788888888888888888887663 11
Q ss_pred CCC-HHHHHHHHHHHHhhccHHHHHHHHHHchHhC------CCCC-ChhHHHHHHHHHHhcCC------HHHHHHHHhhC
Q 009967 338 RPN-GVTLLGLLWACNHTGLVEKGYSYFSQAKLED------PGML-KPEHYACMVDLLSRSGR------FKEAKEFLYDL 403 (521)
Q Consensus 338 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~ 403 (521)
.|+ ..++..+..++...|++++|..+++++.... ...+ ....+..+...+...+. +..+...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 232 3467788888889999999999988876431 1112 22344444444443332 44444444444
Q ss_pred CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009967 404 PF-DPG-IGFWKALLGGCQIHSNVELGEFAARRILAL 438 (521)
Q Consensus 404 ~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (521)
.. .|+ ..++..+...+...|++++|...++++++.
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 31 222 337788888999999999999999998875
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.09 E-value=2e-10 Score=93.86 Aligned_cols=141 Identities=10% Similarity=-0.033 Sum_probs=95.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCC
Q 009967 314 CGYAQNGRGEEAIEFFERMRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392 (521)
Q Consensus 314 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (521)
..+...|++++|+..++..... .|+.. .+..+...|...|++++|.+.|+++.+..+ -++..|..+..+|.+.|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE--RDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCc
Confidence 3344556677777777765542 23322 445566667777777777777777765554 355667777777777777
Q ss_pred HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCchHHHHHHHHHHhcCC
Q 009967 393 FKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVELGEFA-ARRILALDPEDVSSYVMLSNALSVAGK 458 (521)
Q Consensus 393 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 458 (521)
+++|+..|++. ...| +...|..+...+...|++++|.+. ++++++++|+++.+|......+.+.|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777777763 2344 456777777778888887765554 588888888888888888888777765
No 95
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.09 E-value=1.7e-07 Score=92.25 Aligned_cols=204 Identities=12% Similarity=-0.012 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 009967 222 EEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKL 301 (521)
Q Consensus 222 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 301 (521)
+.+..+|++++... +.++..+...+.-+...|+.+.|..+++.+... +.+...+...... .+.++. ...+.+..
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~~~--~~~l~~~~ 269 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEEAV--YGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCTHH--HHHHHHHT
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchhHH--HHHHHHHH
Confidence 45677888877643 344566666777777888888888888888888 2233333221111 111111 11222221
Q ss_pred C--C----------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-hccHHHHHHHHHHch
Q 009967 302 T--E----------RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNH-TGLVEKGYSYFSQAK 368 (521)
Q Consensus 302 ~--~----------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~ 368 (521)
. + .....|...+....+.++.+.|..+|++. ... ..+...|......-.. .++.+.|..+|+...
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 1 0 11235666677776778899999999988 321 1344444432222222 336889999999887
Q ss_pred HhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009967 369 LEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILA 437 (521)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (521)
+..+ .++..+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++...
T Consensus 348 ~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 348 LKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6654 234556667777788899999999999874 3567788888877888999888888888775
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.08 E-value=7.3e-10 Score=114.19 Aligned_cols=169 Identities=8% Similarity=-0.101 Sum_probs=132.7
Q ss_pred HhcCCHHHHHHHHhhcC--------C---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh
Q 009967 286 AKCGSMEDSLLVFDKLT--------E---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354 (521)
Q Consensus 286 ~~~g~~~~A~~~~~~~~--------~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 354 (521)
...|++++|.+.|++.. + .+...+..+...+...|++++|...|+++.+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67888999998888876 2 455678888888888999999999999888743 23556788888888889
Q ss_pred ccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 009967 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAA 432 (521)
Q Consensus 355 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 432 (521)
|++++|...|+++....+ .+...+..+..+|.+.|++++ ++.|++.. ..| +...|..+..++...|++++|++.|
T Consensus 481 g~~~~A~~~~~~al~l~P--~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFP--GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHST--TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999998876654 345678888888999999888 88887742 234 5668888888899999999999999
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhcCC
Q 009967 433 RRILALDPEDVSSYVMLSNALSVAGK 458 (521)
Q Consensus 433 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 458 (521)
+++++.+|++..++..++.++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999888888888888877554
No 97
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.07 E-value=1.4e-08 Score=93.13 Aligned_cols=198 Identities=10% Similarity=-0.016 Sum_probs=129.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCC-----ChhHHHHH
Q 009967 212 IGGYSQTGRNEEAVNLFIEMLRE----GLVPN-HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL-----DVFVGNSL 281 (521)
Q Consensus 212 ~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l 281 (521)
...|...|++++|...|.+.... |-.++ ..+|..+..++...|+++.|...++.+.+..... ...+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555666666666666655442 11111 2455566666666666666666666665432111 13467788
Q ss_pred HHHHHhc-CCHHHHHHHHhhcCC--C---C----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH------HHHH
Q 009967 282 ISFYAKC-GSMEDSLLVFDKLTE--R---N----IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG------VTLL 345 (521)
Q Consensus 282 ~~~~~~~-g~~~~A~~~~~~~~~--~---~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~~~~ 345 (521)
..+|... |++++|...|++..+ | + ..++..+...+...|++++|...|++..+....... ..+.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 8889986 999999999998764 1 1 346888899999999999999999999885322211 1567
Q ss_pred HHHHHHHhhccHHHHHHHHHHchHhCCCCCChh---HHHHHHHHHH--hcCCHHHHHHHHhhCCCCCCHH
Q 009967 346 GLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPE---HYACMVDLLS--RSGRFKEAKEFLYDLPFDPGIG 410 (521)
Q Consensus 346 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~ 410 (521)
.+..++...|++++|...|++.....+..++.. .+..++.++. ..+++++|+..|+++. ..++.
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~-~l~~~ 272 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM-RLDKW 272 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS-CCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC-ccHHH
Confidence 777888999999999999999874333222221 3445566664 4578999999998875 34443
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.07 E-value=3.3e-10 Score=92.49 Aligned_cols=141 Identities=11% Similarity=0.045 Sum_probs=111.2
Q ss_pred HHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCC
Q 009967 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSN 424 (521)
Q Consensus 347 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~ 424 (521)
|...+...|++++|...++......+ .++..+..+..+|.+.|++++|++.|++. ...| +..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p--~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPR--QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHH--HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 44556778999999999988752221 22345678999999999999999999984 3344 67799999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHH-HHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcH
Q 009967 425 VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNI-RREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMND 503 (521)
Q Consensus 425 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (521)
+++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+. +|+..
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--------------------------~P~~~ 134 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--------------------------FPGSP 134 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--------------------------STTCH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--------------------------CcCCH
Confidence 99999999999999999999999999999999999887765 5776542 45556
Q ss_pred HHHHHHHHHHHH
Q 009967 504 EIYAVLRSCTEQ 515 (521)
Q Consensus 504 ~i~~~l~~~~~~ 515 (521)
.++...++++..
T Consensus 135 ~~~~l~~~ll~~ 146 (150)
T 4ga2_A 135 AVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 777777766653
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.06 E-value=9.8e-09 Score=81.48 Aligned_cols=131 Identities=19% Similarity=0.274 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHH
Q 009967 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLL 387 (521)
Q Consensus 308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (521)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++....+ .+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC--CchHHHHHHHHHH
Confidence 56677888888889999999988887753 34566777788888888999999999988875543 4566788888889
Q ss_pred HhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967 388 SRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE 441 (521)
Q Consensus 388 ~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 441 (521)
...|++++|.+.++++. . +.+...+..++..+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999888743 2 345678888888899999999999999999998874
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.06 E-value=1.1e-08 Score=88.75 Aligned_cols=172 Identities=9% Similarity=-0.060 Sum_probs=129.6
Q ss_pred HHHHHhhcCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc----cHHHHHHHHHHch
Q 009967 294 SLLVFDKLTE-RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG----LVEKGYSYFSQAK 368 (521)
Q Consensus 294 A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~ 368 (521)
|.+.|++..+ .++..+..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3444444433 456677777777777888888888888887765 55666667666766 6 7888888888875
Q ss_pred HhCCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCC-CCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 009967 369 LEDPGMLKPEHYACMVDLLSR----SGRFKEAKEFLYDLP-FDPG---IGFWKALLGGCQI----HSNVELGEFAARRIL 436 (521)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 436 (521)
..+ ++..+..|..+|.. .+++++|.+.|++.. ..|. +..+..|...|.. .+++++|+..|+++.
T Consensus 81 -~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 -EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp -HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred -HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 443 56677778888876 788888888888754 2332 6778888888877 789999999999998
Q ss_pred hcCCCCchHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 009967 437 ALDPEDVSSYVMLSNALSVA-G-----KWDNVSNIRREMKEKGM 474 (521)
Q Consensus 437 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~ 474 (521)
+. |.++..+..++.+|... | ++++|...|++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 55778889999998764 3 89999999999887764
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.05 E-value=8.4e-09 Score=94.30 Aligned_cols=176 Identities=13% Similarity=-0.045 Sum_probs=138.8
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHh
Q 009967 291 MEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLE 370 (521)
Q Consensus 291 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 370 (521)
.+...+.+......+...+..+...+...|++++|...|++..... +-+...+..+...+...|++++|...++++...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3444555555554555677778888999999999999999988753 235668888888999999999999999998644
Q ss_pred CCCCCChhHH-HHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chH
Q 009967 371 DPGMLKPEHY-ACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPED--VSS 445 (521)
Q Consensus 371 ~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~ 445 (521)
. |+.... ......+.+.++.++|...+++.. . +.+...+..+...+...|++++|+..|+++++.+|++ ..+
T Consensus 181 ~---p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 D---QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp G---CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred h---cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 3 444332 233334667788888888887642 2 4467789999999999999999999999999999987 889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 009967 446 YVMLSNALSVAGKWDNVSNIRREMK 470 (521)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~m~ 470 (521)
+..++.++...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999999988754
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.05 E-value=1.2e-08 Score=88.31 Aligned_cols=134 Identities=10% Similarity=-0.009 Sum_probs=101.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcC
Q 009967 312 VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG 391 (521)
Q Consensus 312 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (521)
+..+|.+.|++++|...|++..+.. +-+...+..+..++...|++++|...|+++....+ .++..+..+..+|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA--DNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHh
Confidence 8888999999999999999998853 23567888899999999999999999999986665 45677888888887665
Q ss_pred C--HHHHHHHHhhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 009967 392 R--FKEAKEFLYDLPFDPGIG--FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLS 450 (521)
Q Consensus 392 ~--~~~A~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 450 (521)
+ .+.+...++... .|+.. .+.....++...|++++|+..|++++++.|+ ......+.
T Consensus 137 ~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~l~ 197 (208)
T 3urz_A 137 EQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence 4 455666776655 45543 4444566677789999999999999999994 33333333
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=8.7e-09 Score=104.25 Aligned_cols=160 Identities=13% Similarity=0.028 Sum_probs=123.9
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Q 009967 288 CGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYF 364 (521)
Q Consensus 288 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 364 (521)
.|++++|.+.|++..+ .+...|..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999999875 346789999999999999999999999998853 335678888999999999999999999
Q ss_pred HHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 009967 365 SQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIH---SNVELGEFAARRILALD 439 (521)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 439 (521)
+++.+..+ .+...+..+..+|.+.|++++|.+.+++.. . +.+...+..+...+... |++++|.+.++++++.+
T Consensus 81 ~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAP--EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99986654 457789999999999999999999998842 2 34567888899999999 99999999999999999
Q ss_pred CCCchHHHHHH
Q 009967 440 PEDVSSYVMLS 450 (521)
Q Consensus 440 p~~~~~~~~l~ 450 (521)
|++...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887776
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.98 E-value=7.6e-09 Score=86.97 Aligned_cols=157 Identities=13% Similarity=0.037 Sum_probs=92.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHH-HHh
Q 009967 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDL-LSR 389 (521)
Q Consensus 311 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 389 (521)
.+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++....+ ++..+..+... +..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ---DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---ChHHHHHHHHHHHHh
Confidence 33444445555555555555444321 11233444455555555555555555555442222 22222111111 111
Q ss_pred cCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chHHHHHHHHHHhcCChHHHHHH
Q 009967 390 SGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPED--VSSYVMLSNALSVAGKWDNVSNI 465 (521)
Q Consensus 390 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~ 465 (521)
.+...+|...+++. ...| +...+..+...+...|++++|+..|+++++.+|+. +..+..++.++...|+.++|...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 11222344444442 1244 46788888888899999999999999999998864 56899999999999999999999
Q ss_pred HHHHHh
Q 009967 466 RREMKE 471 (521)
Q Consensus 466 ~~~m~~ 471 (521)
|++...
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.95 E-value=1.9e-08 Score=87.11 Aligned_cols=156 Identities=9% Similarity=0.081 Sum_probs=112.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHHHhhccHHHHHHHHHHchHhCCCC
Q 009967 312 VICGYAQNGRGEEAIEFFERMRINGIRPNG-VTLLG----------------LLWACNHTGLVEKGYSYFSQAKLEDPGM 374 (521)
Q Consensus 312 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 374 (521)
....+...|++++|...|++..+. .|+. ..+.. +..++...|++++|...|+++.+..+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-- 85 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-- 85 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--
Confidence 334455566666666666666553 2332 23444 78889999999999999999986665
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCchHHHHHH
Q 009967 375 LKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHS--NVELGEFAARRILALDPEDVSSYVMLS 450 (521)
Q Consensus 375 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~ 450 (521)
.++..+..+..+|...|++++|...|++.. ..| +..+|..+...+...| +.+.+...++++....| ....+...+
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHH
Confidence 467789999999999999999999999853 344 5678888888876654 34556677777654333 334566778
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 009967 451 NALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
.++...|++++|+..|++..+.
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 8889999999999999998754
No 106
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.95 E-value=2e-09 Score=87.47 Aligned_cols=97 Identities=13% Similarity=0.053 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 009967 377 PEHYACMVDLLSRSGRFKEAKEFLYDLP-FD-PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS 454 (521)
Q Consensus 377 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 454 (521)
...+..+...+.+.|++++|...|++.. .. .+...|..+..++...|++++|+..|+++++++|+++.+|..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 4467788889999999999999998853 34 467789999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 009967 455 VAGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 455 ~~g~~~~A~~~~~~m~~~g 473 (521)
..|++++|+..|++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999988754
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.94 E-value=7.1e-08 Score=88.08 Aligned_cols=172 Identities=10% Similarity=0.030 Sum_probs=122.1
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCC
Q 009967 194 LKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL 273 (521)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 273 (521)
.+.+......+...+..+...+...|++++|...|++..... |+
T Consensus 106 ~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~---------------------------------- 149 (287)
T 3qou_A 106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQ---------------------------------- 149 (287)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TS----------------------------------
T ss_pred HHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--Cc----------------------------------
Confidence 333333333344556666666677777777777777766632 44
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009967 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIVTWNA-VICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350 (521)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 350 (521)
+...+..+..++.+.|++++|...++++.+ |+...... ....+...++.++|...+++..... +.+...+..+...
T Consensus 150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~ 228 (287)
T 3qou_A 150 NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQ 228 (287)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 667788888999999999999999999875 54432222 2233566778888888888887753 3456678888888
Q ss_pred HHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 009967 351 CNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402 (521)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (521)
+...|++++|...|+++....+-..+...+..++.+|...|+.++|...+++
T Consensus 229 l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 229 LHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 8899999999999998886665444466788888888888888888777654
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.94 E-value=1.5e-08 Score=79.65 Aligned_cols=108 Identities=13% Similarity=-0.001 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHH
Q 009967 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQ 420 (521)
Q Consensus 343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~ 420 (521)
.+......+.+.|++++|...|+++.+..+ .++..|..+..+|.+.|++++|+..+++.. . +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDP--ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 555666677777777777777777765554 355667777777777777777777777632 2 334567777777777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNA 452 (521)
Q Consensus 421 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 452 (521)
..|++++|++.|+++++++|+++.++..+..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 78888888888888888888777777766654
No 109
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.93 E-value=5.3e-08 Score=100.36 Aligned_cols=169 Identities=10% Similarity=-0.077 Sum_probs=132.7
Q ss_pred HhhcchHHHHHHHHHHH--------HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHc
Q 009967 251 ANIAALGMGKSFHACAV--------KFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQN 319 (521)
Q Consensus 251 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 319 (521)
...|++++|...++.+. +... .+...+..+..++.+.|++++|.+.|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67788888888888887 3332 2667788888999999999999999998875 4667888899999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 009967 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEF 399 (521)
Q Consensus 320 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 399 (521)
|++++|...|++..+.. +-+...+..+..++...|++++ ...|+++.+..+ .+...|..+..+|.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND--GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC--chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999988753 2245678888888999999999 999999876654 4566888999999999999999999
Q ss_pred HhhCC-CCCC-HHHHHHHHHHHHhcCC
Q 009967 400 LYDLP-FDPG-IGFWKALLGGCQIHSN 424 (521)
Q Consensus 400 ~~~~~-~~~~-~~~~~~l~~~~~~~g~ 424 (521)
|++.. ..|+ ...+..+..++...++
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99854 5666 4477777777666554
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.92 E-value=2.5e-08 Score=100.79 Aligned_cols=146 Identities=13% Similarity=-0.029 Sum_probs=81.4
Q ss_pred hcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHH
Q 009967 253 IAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFF 329 (521)
Q Consensus 253 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~ 329 (521)
.|++++|...++++.+..+. +...+..+...+.+.|++++|.+.|++..+ .+...|..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 35666666666666655433 456666666677777777777777766654 23456666666777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhc---CCHHHHHHHHhh
Q 009967 330 ERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS---GRFKEAKEFLYD 402 (521)
Q Consensus 330 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~ 402 (521)
++..+.. +.+...+..+..++...|++++|.+.++++.+..+ .+...+..+..++... |++++|.+.+++
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP--EEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 7766542 22345666666667777777777777776654443 3445666666667666 777777766665
No 111
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.90 E-value=6e-09 Score=84.67 Aligned_cols=97 Identities=13% Similarity=0.045 Sum_probs=79.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 009967 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL 453 (521)
Q Consensus 376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 453 (521)
+...+..+...+.+.|++++|...|++.. . +.+...|..+..++...|++++|+..|+++++++|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34466677788888888888888888742 2 446778888888888899999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 009967 454 SVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 454 ~~~g~~~~A~~~~~~m~~~ 472 (521)
...|++++|...|++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999887654
No 112
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.90 E-value=1.6e-07 Score=92.47 Aligned_cols=354 Identities=9% Similarity=-0.056 Sum_probs=197.9
Q ss_pred hcC-ChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCC-HHHH
Q 009967 85 KQH-HYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS-IEEA 162 (521)
Q Consensus 85 ~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a 162 (521)
+.| +++.|..+|+.+.+. -|. |+++.+..+|+..+.. .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 488888899888763 244 8999999999998873 5799999988887777663 3455
Q ss_pred HHHhhcCCC------CCchhHHHHHHHHH----cCCCHHHHHHHHhhCCC-C--Ch-hHHHHHHHHHHhc----------
Q 009967 163 TRVFEDTHN------PNVVSYTTMICGLL----KRERFEDALKLFQEMPH-R--NV-VSWNAMIGGYSQT---------- 218 (521)
Q Consensus 163 ~~~~~~~~~------~~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~-~--~~-~~~~~l~~~~~~~---------- 218 (521)
..+|+.... .+...|...+.-+. ..|+++.+.++|++... | +. ..|......-...
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHH
Confidence 566665432 34456666665543 23567888888888755 2 11 2233222211111
Q ss_pred ---CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhh--c-----chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 009967 219 ---GRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANI--A-----ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC 288 (521)
Q Consensus 219 ---~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 288 (521)
+.+..|..+++.+...--..+...+...+.--... + ..+.+..+++.++...+. +..+|...+..+.+.
T Consensus 148 ~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 148 DTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYY-AEEVYFFYSEYLIGI 226 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHc
Confidence 12223344444443210001222333322222111 0 123456677777775543 466777777777788
Q ss_pred CCHHHHHHHHhhcCC-CChh-HHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCCC---HHHHHHHHHHHHhh
Q 009967 289 GSMEDSLLVFDKLTE-RNIV-TWNAVICGYAQNGRGEEAIEFFERMRING---------IRPN---GVTLLGLLWACNHT 354 (521)
Q Consensus 289 g~~~~A~~~~~~~~~-~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~---------~~p~---~~~~~~ll~~~~~~ 354 (521)
|+.+.|..+|++... |+.. .|. .|....+.++. ++.+.+.- ..+. ...|...+....+.
T Consensus 227 ~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~ 299 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKK 299 (493)
T ss_dssp TCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHc
Confidence 888888888876653 3222 121 22222122222 22222110 0011 12455555555567
Q ss_pred ccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009967 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG-RFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFA 431 (521)
Q Consensus 355 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 431 (521)
++.+.|..+|+++ ...+ .+..+|...+..-.+.+ +.+.|..+|+... .+.++..|...+......|+.+.|..+
T Consensus 300 ~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l 376 (493)
T 2uy1_A 300 RGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARAL 376 (493)
T ss_dssp HCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7788888888877 2222 23444543333333333 5888888887632 122344566666666777888888888
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967 432 ARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 432 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 471 (521)
|+++ +.+...|..++..-...|+.+.+..+++++.+
T Consensus 377 ~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 377 FKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8887 33667777888777778888888887777653
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.89 E-value=2.8e-08 Score=78.08 Aligned_cols=95 Identities=7% Similarity=0.062 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967 378 EHYACMVDLLSRSGRFKEAKEFLYDL-PF-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV 455 (521)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 455 (521)
..+......|.+.|++++|++.|++. .. +.+...|..+..++...|++++|+..|+++++++|+++.+|..++.++..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 46778899999999999999999984 33 44677999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhC
Q 009967 456 AGKWDNVSNIRREMKEK 472 (521)
Q Consensus 456 ~g~~~~A~~~~~~m~~~ 472 (521)
.|++++|++.|++..+.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998753
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.89 E-value=2.4e-07 Score=84.91 Aligned_cols=161 Identities=6% Similarity=-0.056 Sum_probs=121.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC----hhHHH
Q 009967 311 AVICGYAQNGRGEEAIEFFERMRING-IRPNGV----TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK----PEHYA 381 (521)
Q Consensus 311 ~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 381 (521)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|...++++.......++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34677888999999999999987742 122221 2334666677788999999999998753332233 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC-----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chHH
Q 009967 382 CMVDLLSRSGRFKEAKEFLYDLP-----FDPG----IGFWKALLGGCQIHSNVELGEFAARRILALDPED------VSSY 446 (521)
Q Consensus 382 ~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 446 (521)
.+..+|...|++++|...+++.. .+.+ ..++..+...|...|++++|+..++++++..+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999888742 1112 2277888889999999999999999999864332 6789
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHh
Q 009967 447 VMLSNALSVAGK-WDNVSNIRREMKE 471 (521)
Q Consensus 447 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 471 (521)
..++.+|.+.|+ +++|...+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988754
No 115
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.88 E-value=2.1e-06 Score=78.15 Aligned_cols=225 Identities=10% Similarity=0.027 Sum_probs=141.4
Q ss_pred hHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhhc--chHHHHHHHHHHHHcCCCCChhHHHHHHHHH----Hhc---CC
Q 009967 221 NEEAVNLFIEMLREGLVPNHST-LPCAIIAAANIA--ALGMGKSFHACAVKFLGKLDVFVGNSLISFY----AKC---GS 290 (521)
Q Consensus 221 ~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~ 290 (521)
.++|++.++.++.. .|+..| ++.--.++...+ +++++...++.+....++ +..+++.-..++ ... ++
T Consensus 49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 35677777666663 354433 333334444445 666666666666665544 444444443333 344 67
Q ss_pred HHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhcc------HHH
Q 009967 291 MEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGE--EAIEFFERMRINGIRPNGVTLLGLLWACNHTGL------VEK 359 (521)
Q Consensus 291 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~------~~~ 359 (521)
++++..+++.+.+ .|..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...|+.-...+...+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 7788888877764 45667777777777777777 8888888887754 2355666665555555555 777
Q ss_pred HHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHH-HHHHHhhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009967 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE-AKEFLYDLPF-----DPGIGFWKALLGGCQIHSNVELGEFAAR 433 (521)
Q Consensus 360 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 433 (521)
+.+.++++....+ -|...|+.+...+.+.|+... +..+..++.. ......+..++..+...|+.++|+++++
T Consensus 205 El~~~~~aI~~~p--~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIVKCP--QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHCS--SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8888777765554 466677777777777776443 4445555321 2355677777777777777778888888
Q ss_pred HHHh-cCCCCchHHHHHHH
Q 009967 434 RILA-LDPEDVSSYVMLSN 451 (521)
Q Consensus 434 ~~~~-~~p~~~~~~~~l~~ 451 (521)
.+.+ .+|.....|...+.
T Consensus 283 ~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 283 LLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHTTCGGGHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHHHh
Confidence 7776 67766666665543
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.88 E-value=6.2e-08 Score=89.49 Aligned_cols=220 Identities=14% Similarity=0.020 Sum_probs=153.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 009967 217 QTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLL 296 (521)
Q Consensus 217 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 296 (521)
..|++++|.+++++..+.. +.. + +...++++.|...+.. ....|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~--~~~--~------~~~~~~~~~A~~~~~~---------------a~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL--KTS--F------MKWKPDYDSAASEYAK---------------AAVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CCC--S------SSCSCCHHHHHHHHHH---------------HHHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc--ccc--c------cCCCCCHHHHHHHHHH---------------HHHHHHHcCCHHHHHH
Confidence 3567888888888776532 110 0 0013566666655554 3567778899999888
Q ss_pred HHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhhccHHHHH
Q 009967 297 VFDKLTE-----RN----IVTWNAVICGYAQNGRGEEAIEFFERMRIN----GIRPN--GVTLLGLLWACNHTGLVEKGY 361 (521)
Q Consensus 297 ~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~~~~~~a~ 361 (521)
.|.+..+ .+ ..+|+.+...|...|++++|...|++..+. | .|. ..++..+..+|.. |++++|.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 8887753 12 347888889999999999999999987652 2 122 3467788888888 9999999
Q ss_pred HHHHHchHhCCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCC-C---CCC----HHHHHHHHHHHHhcCCHHHHH
Q 009967 362 SYFSQAKLEDPGMLK----PEHYACMVDLLSRSGRFKEAKEFLYDLP-F---DPG----IGFWKALLGGCQIHSNVELGE 429 (521)
Q Consensus 362 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~~----~~~~~~l~~~~~~~g~~~~A~ 429 (521)
..|++.....+...+ ..++..+..+|.+.|++++|+..+++.. . .++ ...+..++..+...|++++|+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999988643321111 3578889999999999999999998742 1 122 225666667778889999999
Q ss_pred HHHHHHHhcCCCCch-----HHHHHHHHHHhcCChHHHHHH
Q 009967 430 FAARRILALDPEDVS-----SYVMLSNALSVAGKWDNVSNI 465 (521)
Q Consensus 430 ~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~ 465 (521)
..|++++ ..|.... ....++.++ ..|+.+.+..+
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999 8886433 344555555 56777666553
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.87 E-value=6.9e-08 Score=84.71 Aligned_cols=184 Identities=9% Similarity=-0.051 Sum_probs=132.0
Q ss_pred ChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChh----HHH
Q 009967 239 NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLD--VFVGNSLISFYAKCGSMEDSLLVFDKLTE--RNIV----TWN 310 (521)
Q Consensus 239 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~ 310 (521)
+...+......+...|+++.|...++.+.+..+... ...+..+..+|.+.|++++|...|+++.+ |+.. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344566677788999999999999999998765422 35778889999999999999999999874 4322 455
Q ss_pred HHHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhhccHHHHHHHHHHchHhC
Q 009967 311 AVICGYAQ------------------NGRGEEAIEFFERMRINGIRPNGV-TLLGLLWACNHTGLVEKGYSYFSQAKLED 371 (521)
Q Consensus 311 ~li~~~~~------------------~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 371 (521)
.+..++.. .|++++|...|+++.+. .|+.. ....... .+. +...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l~~------~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----LVF------LKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----HHH------HHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----HHH------HHHHH----
Confidence 55555554 57899999999999875 35543 2211111 000 11111
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 009967 372 PGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPGI----GFWKALLGGCQIHSNVELGEFAARRILALDPEDV 443 (521)
Q Consensus 372 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 443 (521)
......+...|.+.|++++|...++++. ..|+. ..+..+..++...|++++|++.++++....|++.
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 0112356788889999999999998853 23432 4678888899999999999999999999888754
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.87 E-value=1e-07 Score=82.66 Aligned_cols=129 Identities=9% Similarity=-0.063 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHH
Q 009967 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLL 387 (521)
Q Consensus 308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (521)
.+..+...+...|++++|...|++. +.|+...+..+..++...|++++|...++++....+ .+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--HLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHH
Confidence 4556677778888888888888866 356777888888888888888888888888875543 4566788888888
Q ss_pred HhcCCHHHHHHHHhhCC-CCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 009967 388 SRSGRFKEAKEFLYDLP-FDP-G----------------IGFWKALLGGCQIHSNVELGEFAARRILALDPED 442 (521)
Q Consensus 388 ~~~g~~~~A~~~~~~~~-~~~-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 442 (521)
...|++++|.+.+++.. ..| + ...+..+..++...|++++|...|+++++..|++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 88888888888887632 111 1 2567777778888888888888888888888865
No 119
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.87 E-value=2.1e-08 Score=80.84 Aligned_cols=120 Identities=10% Similarity=-0.001 Sum_probs=96.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 009967 377 PEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS 454 (521)
Q Consensus 377 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 454 (521)
...+..+...+.+.|++++|...|++.. . +.+...|..+..++...|++++|+..|+++++.+|+++.++..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3456677788888999999999988742 2 4467788888889999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcHHHHHHHHHHHHHHHhc
Q 009967 455 VAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIREF 519 (521)
Q Consensus 455 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 519 (521)
..|++++|...|++..+... .+|....+......+++.+++.
T Consensus 98 ~~g~~~~A~~~~~~al~~~p-----------------------~~~~~~~~~~~~~~~l~~l~~~ 139 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAA-----------------------AQPAHEALAARAGAMLEAVTAR 139 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHH-----------------------TCGGGHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-----------------------CCcchHHHHHHHHHHHHHHHhc
Confidence 99999999999999876431 3455666777777777666543
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.84 E-value=8.9e-08 Score=79.17 Aligned_cols=127 Identities=9% Similarity=-0.014 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHH
Q 009967 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQ 420 (521)
Q Consensus 343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~ 420 (521)
.+..+...+...|++++|...|+++....+ .+..++..+..++...|++++|...+++.. . +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 455566667777888888888887765443 356677778888888888888888887642 2 345668888888999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHhcCChHHHHHHHHHHHh
Q 009967 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNA--LSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 421 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 471 (521)
..|++++|...++++++..|.++..+..+..+ +...|++++|+..+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999988888555555 8888999999999987643
No 121
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.84 E-value=1.2e-07 Score=82.13 Aligned_cols=171 Identities=9% Similarity=-0.124 Sum_probs=124.6
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CChhHHHHHHHHHHHcC----ChHHHHHHHHHHHH
Q 009967 260 KSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE-RNIVTWNAVICGYAQNG----RGEEAIEFFERMRI 334 (521)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~----~~~~A~~~~~~m~~ 334 (521)
...+....+.| ++..+..+...|...+++++|...|++..+ .++..+..+...|.. + ++++|..+|++..+
T Consensus 6 ~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 6 GSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp THHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 33444444443 566677777777778888888888887765 455677777777776 5 78888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHh----hccHHHHHHHHHHchHhCCCCCC---hhHHHHHHHHHHh----cCCHHHHHHHHhhC
Q 009967 335 NGIRPNGVTLLGLLWACNH----TGLVEKGYSYFSQAKLEDPGMLK---PEHYACMVDLLSR----SGRFKEAKEFLYDL 403 (521)
Q Consensus 335 ~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 403 (521)
.| +...+..+...|.. .+++++|..+|++.. ..+ ++ +..+..|..+|.. .+++++|...|++.
T Consensus 82 ~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 82 AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA-RDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT-SST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH-HcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 65 56677777777766 778899999998875 443 32 6778888888887 77899999988875
Q ss_pred C-CCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCC
Q 009967 404 P-FDPGIGFWKALLGGCQIH-S-----NVELGEFAARRILALDP 440 (521)
Q Consensus 404 ~-~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~p 440 (521)
. ..++...+..|...|... | +.++|+..|+++.+.+.
T Consensus 156 ~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 3 235556777777777543 3 89999999999988764
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.84 E-value=1.1e-08 Score=93.21 Aligned_cols=190 Identities=8% Similarity=-0.054 Sum_probs=126.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009967 274 DVFVGNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA 350 (521)
Q Consensus 274 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 350 (521)
+...+..+...+.+.|++++|...|++..+ .+...|..+..+|...|++++|...+++..+.. +.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345566677777888888888888887753 356677888888888888888888888877643 2345677778888
Q ss_pred HHhhccHHHHHHHHHHchHhCCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009967 351 CNHTGLVEKGYSYFSQAKLEDPGML---KPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVEL 427 (521)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 427 (521)
+...|++++|...|+++....+-.+ ....+..+ ...+...+.. .......++......+.. + ..|+.++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 8888888888888887764332111 11112111 1222222222 122222334433333322 2 3689999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 009967 428 GEFAARRILALDPEDVSSYVMLSNALSVA-GKWDNVSNIRREMKEK 472 (521)
Q Consensus 428 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 472 (521)
|++.++++++.+|++......+...+.+. +++++|.++|.+..+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999998887777787777766 7789999999987653
No 123
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=8.4e-08 Score=80.48 Aligned_cols=156 Identities=15% Similarity=0.022 Sum_probs=95.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh
Q 009967 278 GNSLISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWA-CNH 353 (521)
Q Consensus 278 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~ 353 (521)
...+...+.+.|++++|...|++..+ .+...+..+...+...|++++|...+++..... |+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 34455666677777777777777664 345566777777777777777777777665432 333322221111 112
Q ss_pred hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 009967 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG---IGFWKALLGGCQIHSNVELGE 429 (521)
Q Consensus 354 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~ 429 (521)
.+....|...++++....+ .++..+..+..++...|++++|...++++ ...|+ ...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANP--DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2222345666776664443 34566777777777777777777777763 33443 446777777777778887787
Q ss_pred HHHHHHHh
Q 009967 430 FAARRILA 437 (521)
Q Consensus 430 ~~~~~~~~ 437 (521)
..|++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777654
No 124
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.82 E-value=9.9e-07 Score=80.31 Aligned_cols=212 Identities=13% Similarity=0.079 Sum_probs=169.3
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--CHHHHHHHHhhcCC---CChhHHHHHHHHH----HHc---CChH
Q 009967 256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG--SMEDSLLVFDKLTE---RNIVTWNAVICGY----AQN---GRGE 323 (521)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---~~~~ 323 (521)
.++|....+.++..++. +..+++.-..++...| +++++++.++.+.. .+..+|+.-...+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 36889999999988776 6777888888888888 99999999999875 4456777665555 555 7899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHH--HHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCC------HHH
Q 009967 324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE--KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR------FKE 395 (521)
Q Consensus 324 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~ 395 (521)
+++.+++.+.+.. +-+..+|..-...+...|.++ ++.++++++.+..+ -+...|+.-..++.+.|+ +++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~--~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL--KNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhccccchhhhHHH
Confidence 9999999999854 346678877777777788887 99999999986665 566677766666777776 888
Q ss_pred HHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhcC---CCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967 396 AKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVE-LGEFAARRILALD---PEDVSSYVMLSNALSVAGKWDNVSNIRREM 469 (521)
Q Consensus 396 A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 469 (521)
+++.+++.. . +-|...|+.+...+...|+.. .+..+++++.+.+ |.++.++..++.+|.+.|+.++|.++++.+
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 988887742 2 456779999888888887744 4667888887776 789999999999999999999999999998
Q ss_pred Hh
Q 009967 470 KE 471 (521)
Q Consensus 470 ~~ 471 (521)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.81 E-value=1.4e-07 Score=86.41 Aligned_cols=164 Identities=5% Similarity=-0.101 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC----hh
Q 009967 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPN-G----VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK----PE 378 (521)
Q Consensus 308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 378 (521)
.+...+..+...|++++|.+.+++..+...... . ..+..+...+...|++++|...++++........+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445567778889999999999988777432211 1 12334555667888999999999887633221122 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------Cc
Q 009967 379 HYACMVDLLSRSGRFKEAKEFLYDLP----FDPG-----IGFWKALLGGCQIHSNVELGEFAARRILALDPE------DV 443 (521)
Q Consensus 379 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~ 443 (521)
+++.+...|...|++++|...+++.. ..|+ ..++..+...|...|++++|+..++++++..++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78889999999999999999987742 1222 247888888999999999999999999886432 26
Q ss_pred hHHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 009967 444 SSYVMLSNALSVAGKWDNV-SNIRREMKE 471 (521)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 471 (521)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7889999999999999999 777887653
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.77 E-value=2.3e-07 Score=72.28 Aligned_cols=115 Identities=19% Similarity=0.209 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 009967 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGG 418 (521)
Q Consensus 341 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 418 (521)
...+..+...+...|++++|...++++....+ .+...+..+..++.+.|++++|...++++. .+.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 34566666677777777777777777764443 345567777777778888888887777642 13456677888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC
Q 009967 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457 (521)
Q Consensus 419 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 457 (521)
+...|++++|...++++.+..|+++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888999999999999999999988888888888876654
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.77 E-value=1.4e-07 Score=74.16 Aligned_cols=117 Identities=11% Similarity=-0.042 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHH
Q 009967 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGG 418 (521)
Q Consensus 341 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~ 418 (521)
...+..+...+...|+++.|...++++....+ .+...+..+..++...|++++|.+.+++.. . +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP--ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34566666777777888888888887765443 356677778888888888888888887642 2 3446678888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh
Q 009967 419 CQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW 459 (521)
Q Consensus 419 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 459 (521)
+...|++++|...++++++..|+++..+..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999888875
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.76 E-value=1.3e-07 Score=79.32 Aligned_cols=118 Identities=10% Similarity=0.134 Sum_probs=74.0
Q ss_pred hhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHH-HHhcCCH--HH
Q 009967 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGG-CQIHSNV--EL 427 (521)
Q Consensus 353 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~-~~~~g~~--~~ 427 (521)
..|++++|...+++.....+ .+...+..+..+|...|++++|...+++.. . +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP--QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34556666666666554443 344556666666666666666666666532 1 2345566666666 5566776 77
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 428 GEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 428 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
|+..++++++.+|+++.++..++.+|...|++++|...+++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777777777777777777777777777777777776654
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.76 E-value=4.4e-07 Score=78.60 Aligned_cols=131 Identities=14% Similarity=0.023 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhcc
Q 009967 277 VGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL 356 (521)
Q Consensus 277 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 356 (521)
.+..+...+...|++++|...|++..+++...|..+...+...|++++|...+++..... +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 355667777888888888888888887788888888888888888888888888877753 3456677788888888888
Q ss_pred HHHHHHHHHHchHhCCCCC--------------ChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC
Q 009967 357 VEKGYSYFSQAKLEDPGML--------------KPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG 408 (521)
Q Consensus 357 ~~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 408 (521)
+++|...|+++....+..+ ....+..+..+|.+.|++++|.+.+++. ...|+
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 8888888888875443222 1256778888888888888888888773 33454
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.74 E-value=1.6e-07 Score=87.90 Aligned_cols=128 Identities=9% Similarity=-0.087 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCC-------------ChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CC
Q 009967 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGML-------------KPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DP 407 (521)
Q Consensus 343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~ 407 (521)
.+..+...+...|++++|...|+++....+..+ ....|..+..+|.+.|++++|+..+++.. . +.
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 455555556666666666666666553333111 14678888999999999999999988742 2 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 009967 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNV-SNIRREMK 470 (521)
Q Consensus 408 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 470 (521)
+...|..+..++...|++++|+..|+++++++|+++.++..++.++.+.|++++| ...++.|.
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999999999999999999999999999998 55666664
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.73 E-value=1.5e-07 Score=74.41 Aligned_cols=115 Identities=10% Similarity=0.010 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHH
Q 009967 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGC 419 (521)
Q Consensus 342 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~ 419 (521)
..+..+...+...|++++|...++++....+ .+...+..+..+|...|++++|.+.+++.. . +.+...+..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNP--KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3555555566666666666666666543222 244556666666666666666666666532 1 33456777777778
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 009967 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458 (521)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 458 (521)
...|++++|+..|+++++.+|.+...+..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888776653
No 132
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.71 E-value=7.4e-08 Score=88.99 Aligned_cols=197 Identities=8% Similarity=-0.030 Sum_probs=148.4
Q ss_pred hhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 009967 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFER 331 (521)
Q Consensus 252 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 331 (521)
..|++++|..++++..+.... . .+...++++.|...|..+ ...|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 367888999999888765322 1 011157888888887653 6678889999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCC--CCC--hhHHHHHHHHHHhcCCHHHHHHHHhh
Q 009967 332 MRIN----GIRPN-GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG--MLK--PEHYACMVDLLSRSGRFKEAKEFLYD 402 (521)
Q Consensus 332 m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (521)
..+. +-.+. ..+|..+..+|...|++++|...|++......- .+. ..++..+..+|.. |++++|+..+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7652 21111 347888888899999999999999987643211 121 3467888999988 999999999987
Q ss_pred CC-C---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------hHHHHHHHHHHhcCChHHHHHHHHH
Q 009967 403 LP-F---DPG----IGFWKALLGGCQIHSNVELGEFAARRILALDPEDV------SSYVMLSNALSVAGKWDNVSNIRRE 468 (521)
Q Consensus 403 ~~-~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (521)
.. . ..+ ..++..+...+...|++++|+..|++++++.|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 42 1 111 34788888999999999999999999999765432 3677788888999999999999999
Q ss_pred HH
Q 009967 469 MK 470 (521)
Q Consensus 469 m~ 470 (521)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 77
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.65 E-value=3e-07 Score=72.14 Aligned_cols=118 Identities=10% Similarity=0.025 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967 378 EHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV 455 (521)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 455 (521)
..+..+...+.+.|++++|...|++.. . +.+...|..+..++...|++++|+..++++++.+|+++.+|..++.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 456666777777888888888777632 2 34566788888888888889999999999999889888889999999999
Q ss_pred cCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcHHHHHHHHHHHHH
Q 009967 456 AGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQ 515 (521)
Q Consensus 456 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 515 (521)
.|++++|...+++..+.... ....|....+...+..+...
T Consensus 85 ~~~~~~A~~~~~~al~~~p~--------------------~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAE--------------------VNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHH--------------------HHTTTTHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcc--------------------cCCchhHHHHHHHHHHHHHh
Confidence 99999999988887654311 02336666777666665543
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.65 E-value=7.5e-07 Score=79.22 Aligned_cols=181 Identities=9% Similarity=-0.076 Sum_probs=105.1
Q ss_pred hcCCHHHHHHHHhhcCC--C-ChhHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCCH---------------
Q 009967 287 KCGSMEDSLLVFDKLTE--R-NIVTWNAV-------ICGYAQNGRGEEAIEFFERMRINGIRPNG--------------- 341 (521)
Q Consensus 287 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~~~~~~A~~~~~~m~~~~~~p~~--------------- 341 (521)
..++...|.+.|.++.+ | ....|..+ ...+...++..+++..+.+-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 45667777777776654 2 23455555 3444444444455444444332 11211
Q ss_pred -------HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCH----H
Q 009967 342 -------VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGI----G 410 (521)
Q Consensus 342 -------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~ 410 (521)
.....+...+...|++++|.+.|+.+. ..+ |+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~-~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAP-VAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSC-CTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 122334455667777777777777664 222 33324455555677777777777777654323322 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 411 FWKALLGGCQIHSNVELGEFAARRILALD--PE-DVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
.+..+..++...|++++|+..|+++.... |. .+......+.++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 45556666777777777777777776432 43 4456677777777777777777777777654
No 135
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.64 E-value=2.5e-07 Score=70.52 Aligned_cols=100 Identities=13% Similarity=0.095 Sum_probs=83.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchHHHHHHH
Q 009967 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE--DVSSYVMLSN 451 (521)
Q Consensus 376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 451 (521)
+...+..+...+...|++++|...+++.. . +.+...+..+...+...|++++|+..++++++..|. ++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34456777888888888888888887742 2 345678888888899999999999999999999998 8999999999
Q ss_pred HHHhc-CChHHHHHHHHHHHhCCCc
Q 009967 452 ALSVA-GKWDNVSNIRREMKEKGMT 475 (521)
Q Consensus 452 ~~~~~-g~~~~A~~~~~~m~~~g~~ 475 (521)
++... |++++|.+.+++..+....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999 9999999999998876543
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.64 E-value=2.6e-07 Score=82.22 Aligned_cols=136 Identities=13% Similarity=-0.040 Sum_probs=94.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC--hhHHHHHHHHH
Q 009967 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK--PEHYACMVDLL 387 (521)
Q Consensus 310 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 387 (521)
-.+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+... ..+ .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~-~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAG-KWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGG-GCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhh-ccC-CcccHHHHHHHHHHHH
Confidence 345566777788888888887766543 554444445556778888888888887653 222 111 23567778888
Q ss_pred HhcCCHHHHHHHHhhCCCC---CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 009967 388 SRSGRFKEAKEFLYDLPFD---PG--IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLS 450 (521)
Q Consensus 388 ~~~g~~~~A~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 450 (521)
.+.|++++|+..|++.... |. ...+.....++...|+.++|...|+++...+|+ +..+..|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 8888888888888875322 43 235666777788889999999999999999996 66555553
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.62 E-value=4e-07 Score=73.77 Aligned_cols=99 Identities=6% Similarity=-0.018 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHH
Q 009967 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQ 420 (521)
Q Consensus 343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 420 (521)
.+..+...+...|++++|...|+++....+ .++..|..+..+|.+.|++++|+..|++.. ..| ++..|..+..++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF--YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 566666677778888888888887775554 456677778888888888888888887642 233 4567778888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCc
Q 009967 421 IHSNVELGEFAARRILALDPEDV 443 (521)
Q Consensus 421 ~~g~~~~A~~~~~~~~~~~p~~~ 443 (521)
..|++++|+..|++++++.|+++
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCHH
Confidence 88888888888888888888543
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.62 E-value=2.1e-07 Score=75.47 Aligned_cols=115 Identities=10% Similarity=-0.030 Sum_probs=87.6
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-
Q 009967 329 FERMRINGIRPN-GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F- 405 (521)
Q Consensus 329 ~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~- 405 (521)
++++.. +.|+ ...+..+...+...|++++|...|+++....+ .++..|..+..+|...|++++|...+++.. .
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH--YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 444443 3343 34566677778888999999998888875554 466778888888889999999998888742 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 009967 406 DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYV 447 (521)
Q Consensus 406 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 447 (521)
+.+...+..+..++...|++++|+..|+++++..|+++....
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 345667888888999999999999999999999998776533
No 139
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.61 E-value=1.1e-06 Score=67.39 Aligned_cols=108 Identities=13% Similarity=0.024 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHH
Q 009967 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQ 420 (521)
Q Consensus 343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~ 420 (521)
.+..+...+...|++++|...++++....+ .++..+..+..++...|++++|...+++.. . +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP--HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 444455555556666666666665543332 234455555555666666666665555421 1 223455666666666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNA 452 (521)
Q Consensus 421 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 452 (521)
..|++++|...++++.+.+|+++..+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66677777777777777666666666555544
No 140
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.61 E-value=1.6e-06 Score=79.40 Aligned_cols=162 Identities=9% Similarity=-0.117 Sum_probs=116.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HH
Q 009967 277 VGNSLISFYAKCGSMEDSLLVFDKLTE--R-NI------VTWNAVICGYAQNGRGEEAIEFFERMRINGI---RPN--GV 342 (521)
Q Consensus 277 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~---~p~--~~ 342 (521)
.+...+..+...|++++|.+.+....+ + .. ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344566777888999999888876542 1 11 2244455667778899999999998875321 122 34
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHch---HhCCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHhhCC-C------CCC-H
Q 009967 343 TLLGLLWACNHTGLVEKGYSYFSQAK---LEDPGMLK--PEHYACMVDLLSRSGRFKEAKEFLYDLP-F------DPG-I 409 (521)
Q Consensus 343 ~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~------~~~-~ 409 (521)
+++.+...|...|++++|..+++++. ...+..+. ..++..+..+|.+.|++++|...+++.. . ... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888888999999999999999886 33332221 2478889999999999999999988632 1 111 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 009967 410 GFWKALLGGCQIHSNVELG-EFAARRILAL 438 (521)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 438 (521)
.++..+...+...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5788888889999999999 7878888763
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.61 E-value=5.4e-07 Score=77.10 Aligned_cols=96 Identities=8% Similarity=0.008 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967 378 EHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV 455 (521)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 455 (521)
.++..+..+|.+.|++++|...+++.. . +.+...+..+..++...|++++|+..|+++++.+|+++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 567778888888888888888887742 2 44567888899999999999999999999999999999999999999999
Q ss_pred cCChHHHH-HHHHHHHhCC
Q 009967 456 AGKWDNVS-NIRREMKEKG 473 (521)
Q Consensus 456 ~g~~~~A~-~~~~~m~~~g 473 (521)
.++.+++. ..++.|...|
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 98888877 5666665544
No 142
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.60 E-value=2.6e-07 Score=71.96 Aligned_cols=94 Identities=14% Similarity=0.023 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 009967 379 HYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA 456 (521)
Q Consensus 379 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 456 (521)
.+..+...+.+.|++++|...+++.. ..| +...|..+..++...|++++|+..|+++++++|+++.++..++.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35567788889999999999998853 344 6778888999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhC
Q 009967 457 GKWDNVSNIRREMKEK 472 (521)
Q Consensus 457 g~~~~A~~~~~~m~~~ 472 (521)
|++++|+..+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998764
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.59 E-value=7.5e-07 Score=70.88 Aligned_cols=99 Identities=12% Similarity=-0.008 Sum_probs=80.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967 375 LKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA 452 (521)
Q Consensus 375 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 452 (521)
.+...+..+...+...|++++|...+++.. . +.+...|..+...+...|++++|+..++++++.+|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 355667777788888888888888877632 2 33466788888888889999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 009967 453 LSVAGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~~~g 473 (521)
+...|++++|...+++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999887643
No 144
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.58 E-value=7.8e-07 Score=69.70 Aligned_cols=111 Identities=7% Similarity=-0.160 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHH
Q 009967 342 VTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGC 419 (521)
Q Consensus 342 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~ 419 (521)
..+..+...+...|++++|...|++.....+ .+...|..+..+|.+.|++++|+..+++.. . +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3556666677778888888888888765554 356677888888888888888888887742 2 33466888888889
Q ss_pred HhcCCHHHHHHHHHHHHhcC------CCCchHHHHHHHHHH
Q 009967 420 QIHSNVELGEFAARRILALD------PEDVSSYVMLSNALS 454 (521)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 454 (521)
...|++++|+..|+++++.+ |.++.++..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999988 877777777766543
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.58 E-value=5.2e-07 Score=74.55 Aligned_cols=110 Identities=16% Similarity=0.002 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHH
Q 009967 340 NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDP-GIGFWKALLG 417 (521)
Q Consensus 340 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~ 417 (521)
+...+..+...+...|++++|...|+++....+ .+...|..+..+|.+.|++++|+..+++.. ..| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP--ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345677777888888999999999998876554 356778888888889999999988888742 233 4668888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 009967 418 GCQIHSNVELGEFAARRILALDPEDVSSYVMLSN 451 (521)
Q Consensus 418 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 451 (521)
++...|++++|+..|+++++++|+++..+...+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 8888899999999999999988888876555443
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.57 E-value=9.2e-07 Score=69.73 Aligned_cols=98 Identities=9% Similarity=0.092 Sum_probs=87.8
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967 375 LKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNA 452 (521)
Q Consensus 375 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 452 (521)
.+...+..+...+.+.|++++|...+++. ...| +...+..+...+...|++++|+..++++++..|+++.++..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34557888999999999999999999984 3344 677899999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 009967 453 LSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~~~ 472 (521)
+.+.|++++|...+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999998754
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.57 E-value=6.7e-07 Score=74.90 Aligned_cols=127 Identities=11% Similarity=0.055 Sum_probs=99.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHH-HHhcCCH--
Q 009967 317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDL-LSRSGRF-- 393 (521)
Q Consensus 317 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 393 (521)
...|++++|...+++..... +.+...+..+...+...|++++|...|+++....+ .++..+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG--ENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCCcch
Confidence 45678888999998887753 34667888888889999999999999999875554 456678888888 7788998
Q ss_pred HHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 009967 394 KEAKEFLYDLP-FDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSY 446 (521)
Q Consensus 394 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 446 (521)
++|...+++.. ..| +...+..+...+...|++++|+..|+++++..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999998743 234 567888888999999999999999999999999876543
No 148
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.56 E-value=6.5e-06 Score=75.24 Aligned_cols=158 Identities=11% Similarity=0.071 Sum_probs=79.7
Q ss_pred HHHHHcCCCHHHHHHHHhhCCCC-----C----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 009967 181 ICGLLKRERFEDALKLFQEMPHR-----N----VVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAA 251 (521)
Q Consensus 181 i~~~~~~g~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 251 (521)
+..+...|++++|...+++..+. + ...+..+...+...+++++|+..|++........+....
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~-------- 153 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ-------- 153 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH--------
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH--------
Confidence 34455555555555555553321 1 112333555555666677777777766653211111100
Q ss_pred hhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC------CC----hhHHHHHHHHHHHcCC
Q 009967 252 NIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE------RN----IVTWNAVICGYAQNGR 321 (521)
Q Consensus 252 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~----~~~~~~li~~~~~~~~ 321 (521)
...+++.+..+|...|++++|...|+++.+ .+ ..+|..+...|...|+
T Consensus 154 ----------------------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~ 211 (293)
T 3u3w_A 154 ----------------------NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR 211 (293)
T ss_dssp ----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH
Confidence 012344555555555555555555554441 11 1255556666666666
Q ss_pred hHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhhc-cHHHHHHHHHHch
Q 009967 322 GEEAIEFFERMRI----NGIRPN-GVTLLGLLWACNHTG-LVEKGYSYFSQAK 368 (521)
Q Consensus 322 ~~~A~~~~~~m~~----~~~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~ 368 (521)
+++|...+++..+ .+..+. ..++..+..++...| ++++|...++++.
T Consensus 212 y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 212 YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 6666666665543 122222 345666666666666 3466666666554
No 149
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.56 E-value=9.4e-05 Score=68.06 Aligned_cols=172 Identities=11% Similarity=0.031 Sum_probs=104.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhhc-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-C-C
Q 009967 215 YSQTGRNEEAVNLFIEMLREGLVPNHST-LPCAIIAAANIA-ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKC-G-S 290 (521)
Q Consensus 215 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 290 (521)
..+.+..++|+++++.++..+ |+..| ++.--.++...| .++++..+++.+....++ +..+|+.-..++.+. + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence 334444567777777777643 54333 343334444455 366666666666666554 566666666555555 5 6
Q ss_pred HHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhcc---
Q 009967 291 MEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGE--------EAIEFFERMRINGIRPNGVTLLGLLWACNHTGL--- 356 (521)
Q Consensus 291 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--------~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--- 356 (521)
+++++++++.+.+ .|..+|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 7788888888776 34456665555555555555 7777777777754 3356666666666655554
Q ss_pred ----HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCC
Q 009967 357 ----VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR 392 (521)
Q Consensus 357 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (521)
++++.+.++++....+ -|...|+.+-..+.+.|+
T Consensus 220 ~~~~~~eELe~~~~aI~~~P--~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIP--HNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCC
Confidence 5677777777665554 455566666666665554
No 150
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.55 E-value=2e-06 Score=66.69 Aligned_cols=96 Identities=18% Similarity=0.230 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 009967 377 PEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS 454 (521)
Q Consensus 377 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 454 (521)
...+..+...+...|++++|.+.++++. .+.+...+..+...+...|++++|+..++++.+..|+++.++..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4678889999999999999999998853 24467788899999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 009967 455 VAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 455 ~~g~~~~A~~~~~~m~~~ 472 (521)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 151
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.55 E-value=1.8e-06 Score=67.68 Aligned_cols=97 Identities=14% Similarity=0.095 Sum_probs=86.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 009967 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL 453 (521)
Q Consensus 376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 453 (521)
+...+..+...+...|++++|...+++.. . +.+...+..+...+...|++++|+..++++++..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34567888999999999999999998843 2 446778889999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 009967 454 SVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 454 ~~~g~~~~A~~~~~~m~~~ 472 (521)
...|++++|...+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.55 E-value=1.1e-06 Score=67.49 Aligned_cols=97 Identities=8% Similarity=0.053 Sum_probs=86.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 009967 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL 453 (521)
Q Consensus 376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 453 (521)
....+..+...+...|++++|...+++.. . +.+...+..+...+...|++++|...++++++..|+++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34567888999999999999999999853 2 446778899999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 009967 454 SVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 454 ~~~g~~~~A~~~~~~m~~~ 472 (521)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999998754
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.54 E-value=7.3e-07 Score=71.62 Aligned_cols=108 Identities=11% Similarity=-0.006 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHH
Q 009967 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQ 420 (521)
Q Consensus 343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~ 420 (521)
.+..+...+...|++++|...|+++....+ .++..|..+..+|.+.|++++|...+++.. . +.+...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH--YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 455566667788888888888888765554 456677778888888888888888887742 2 334567778888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNA 452 (521)
Q Consensus 421 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 452 (521)
..|++++|+..|+++++..|+++........+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99999999999999999988877665544333
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.53 E-value=1.2e-06 Score=72.32 Aligned_cols=92 Identities=8% Similarity=-0.003 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 009967 379 HYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVA 456 (521)
Q Consensus 379 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 456 (521)
.+..+...+.+.|++++|+..|++.. . +.+...|..+..++...|++++|+..|+++++++|+++.+|..++.+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34444445555555555555554421 1 223444444555555555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHHH
Q 009967 457 GKWDNVSNIRREMK 470 (521)
Q Consensus 457 g~~~~A~~~~~~m~ 470 (521)
|++++|...|++..
T Consensus 93 g~~~~A~~~~~~al 106 (164)
T 3sz7_A 93 ADYKGAKEAYEKGI 106 (164)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 55555555555444
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=1.7e-06 Score=69.62 Aligned_cols=95 Identities=16% Similarity=0.074 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 009967 377 PEHYACMVDLLSRSGRFKEAKEFLYDL-PFDPG----IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSN 451 (521)
Q Consensus 377 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 451 (521)
...+..+...+...|++++|.+.+++. ...|+ ...+..+...+...|++++|+..++++++..|+++.++..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 334555555555556666666555552 23444 3455555555666666666666666666666666666666666
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 009967 452 ALSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~ 471 (521)
++...|++++|...+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666543
No 156
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.50 E-value=1.7e-06 Score=71.20 Aligned_cols=126 Identities=13% Similarity=-0.030 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHH
Q 009967 309 WNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLS 388 (521)
Q Consensus 309 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (521)
+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++.....+ .+...+..+..++.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHH
Confidence 3334444444444444444444444321 12333444444444445555555555554443322 23334444555555
Q ss_pred hcCCHHHHHHHHhhCC-CCC-CHHHHHH--HHHHHHhcCCHHHHHHHHHHHHh
Q 009967 389 RSGRFKEAKEFLYDLP-FDP-GIGFWKA--LLGGCQIHSNVELGEFAARRILA 437 (521)
Q Consensus 389 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 437 (521)
..|++++|...+++.. ..| +...+.. .+..+...|++++|+..+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 5555555555554421 111 2222222 22224445555555555555443
No 157
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.50 E-value=1.1e-06 Score=72.29 Aligned_cols=63 Identities=10% Similarity=0.038 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 410 GFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
..|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...|++..+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 467777777888888888888888888888888888888888888888888888888876643
No 158
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.50 E-value=2.7e-06 Score=72.73 Aligned_cols=131 Identities=13% Similarity=-0.014 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHchHh---CCCCC--Ch
Q 009967 308 TWNAVICGYAQNGRGEEAIEFFERMRI----NGIRP-NGVTLLGLLWACNHTGLVEKGYSYFSQAKLE---DPGML--KP 377 (521)
Q Consensus 308 ~~~~li~~~~~~~~~~~A~~~~~~m~~----~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~--~~ 377 (521)
++..+...+...|++++|...+++... .+..| ...++..+...+...|++++|...+++.... .+..+ ..
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 344444444444444444444444333 11111 1123444444455555555555555444322 11111 12
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009967 378 EHYACMVDLLSRSGRFKEAKEFLYDLP----FDPGI----GFWKALLGGCQIHSNVELGEFAARRILAL 438 (521)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 438 (521)
..+..+...+...|++++|...+++.. ..++. .++..+...+...|++++|.+.+++++++
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 234445555555555555555554421 01111 13445555566666777776666666653
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.48 E-value=7.2e-07 Score=70.07 Aligned_cols=93 Identities=9% Similarity=0.001 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-------hHHHHH
Q 009967 379 HYACMVDLLSRSGRFKEAKEFLYDL-PFD-PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDV-------SSYVML 449 (521)
Q Consensus 379 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~l 449 (521)
.+..+...+.+.|++++|++.|++. ... .+...|..+..+|...|++++|++.++++++++|++. .+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3445555556666666666666552 122 2344566666666666666666666666666655432 245556
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 009967 450 SNALSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 450 ~~~~~~~g~~~~A~~~~~~m~~ 471 (521)
+.++...|++++|++.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666777777777666543
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.46 E-value=2e-06 Score=68.33 Aligned_cols=113 Identities=12% Similarity=-0.082 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHH
Q 009967 339 PNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALL 416 (521)
Q Consensus 339 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~ 416 (521)
.+...+..+...+...|++++|...|+++....+ .+...+..+..++...|++++|...+++.. . +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3556777777778888888888888888765554 346677888888888888888888887642 2 34566888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-----CchHHHHHHHHH
Q 009967 417 GGCQIHSNVELGEFAARRILALDPE-----DVSSYVMLSNAL 453 (521)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~ 453 (521)
.++...|++++|+..|+++++..|+ +..+...+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999988776 455555555443
No 161
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.46 E-value=1.2e-06 Score=74.91 Aligned_cols=48 Identities=15% Similarity=0.073 Sum_probs=24.9
Q ss_pred cCCCHHHHHH---HHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009967 186 KRERFEDALK---LFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLR 233 (521)
Q Consensus 186 ~~g~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 233 (521)
..|++++|.+ .+..-......++..+...+...|++++|...+++...
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 54 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQ 54 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3455555555 44332223345566666666666666666666666544
No 162
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.46 E-value=3.3e-05 Score=71.11 Aligned_cols=214 Identities=12% Similarity=0.093 Sum_probs=157.5
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHc-C-ChHHHHHH
Q 009967 255 ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG-SMEDSLLVFDKLTE---RNIVTWNAVICGYAQN-G-RGEEAIEF 328 (521)
Q Consensus 255 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-~-~~~~A~~~ 328 (521)
..++|..+.+.++..++. +..+++.--.++...| .+++++++++.+.. .+..+|+.-...+... + ++++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 345788899999988776 6777887777888888 59999999999875 4556888877777776 7 89999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhhccHH--------HHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCC-------H
Q 009967 329 FERMRINGIRPNGVTLLGLLWACNHTGLVE--------KGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR-------F 393 (521)
Q Consensus 329 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~ 393 (521)
++.+.+.. +-|..+|+.-...+...|.++ ++.++++++.+..+ -|...|+....++.+.++ +
T Consensus 148 ~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp--~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 148 IHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG--RNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhccccccchHHH
Confidence 99998754 336667776655566656655 89999999986665 567778888888877776 6
Q ss_pred HHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC------CCCchH
Q 009967 394 KEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNV--------------------ELGEFAARRILALD------PEDVSS 445 (521)
Q Consensus 394 ~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~------p~~~~~ 445 (521)
+++++.+++.. . +-|...|+.+-..+...|.. ........++.... +.++.+
T Consensus 225 ~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 225 QDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 78888887642 3 45677888877777766653 33334444443332 457889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 446 YVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
+..++..|...|+.++|.++++.+.+.
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999998643
No 163
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.46 E-value=4.7e-07 Score=82.31 Aligned_cols=88 Identities=16% Similarity=0.044 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcCCC--C-CchhHHHHHHHHHcCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcC
Q 009967 146 GSAILDLYIKLSSIEEATRVFEDTHN--P-NVVSYTTMICGLLKRERFEDALKLFQEMPH---RNVVSWNAMIGGYSQTG 219 (521)
Q Consensus 146 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 219 (521)
+..+...+...|++++|...|++... | +...|..+..++.+.|++++|+..+++..+ .+...+..+..+|...|
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME 86 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 33344444444444444444444332 1 233333444444444444444444444332 23455666666666666
Q ss_pred ChHHHHHHHHHHHH
Q 009967 220 RNEEAVNLFIEMLR 233 (521)
Q Consensus 220 ~~~~a~~~~~~m~~ 233 (521)
++++|...|++...
T Consensus 87 ~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 87 SYDEAIANLQRAYS 100 (281)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 67666666666554
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.46 E-value=1.4e-06 Score=68.47 Aligned_cols=104 Identities=15% Similarity=0.022 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C----CCC----HHHHH
Q 009967 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F----DPG----IGFWK 413 (521)
Q Consensus 343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~~~----~~~~~ 413 (521)
++..+...+.+.|++++|+..|+++.+..+ .+...|..+..+|.+.|++++|++.+++.. . .++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p--~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDP--SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 344455555566666666666666554433 234455566666666666666666655421 1 111 12566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 009967 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVML 449 (521)
Q Consensus 414 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 449 (521)
.+..++...|++++|++.|++++...| ++.....+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHHHH
Confidence 677778888899999999999888877 55554433
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=4.8e-06 Score=66.98 Aligned_cols=113 Identities=10% Similarity=-0.071 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHH
Q 009967 340 NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLK----PEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWK 413 (521)
Q Consensus 340 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~ 413 (521)
+...+..+...+...|++++|...|++..... |+ ...+..+..+|...|++++|...+++.. . +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 44556666666777777777777777765222 34 4566777777777888888877777632 2 33566778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 009967 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSV 455 (521)
Q Consensus 414 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 455 (521)
.+..++...|++++|...|+++++.+|+++.++..+.....+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 888888899999999999999999999888888777766543
No 166
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.45 E-value=1.1e-06 Score=70.43 Aligned_cols=62 Identities=11% Similarity=0.031 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCchHH----HHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 411 FWKALLGGCQIHSNVELGEFAARRILAL-------DPEDVSSY----VMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 411 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
.|..+..++...|++++|+..+++++++ +|++..+| +..+.++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7888888888888888888888888888 99999999 99999999999999999999998653
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.45 E-value=4.4e-07 Score=77.69 Aligned_cols=94 Identities=13% Similarity=-0.010 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 009967 379 HYACMVDLLSRSGRFKEAKEFLYDLP-FDP-G----------------IGFWKALLGGCQIHSNVELGEFAARRILALDP 440 (521)
Q Consensus 379 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 440 (521)
.+..+...+.+.|++++|...|++.. ..| + ...+..+..++...|++++|+..++++++.+|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 34455555666666666666665421 111 1 26788888899999999999999999999999
Q ss_pred CCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 441 EDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 441 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
+++.++..++.+|...|++++|...|++..+.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997754
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.42 E-value=2.2e-06 Score=83.67 Aligned_cols=96 Identities=10% Similarity=0.049 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 009967 377 PEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS 454 (521)
Q Consensus 377 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 454 (521)
...|..+..+|.+.|++++|+..+++.. . +.+...|..+..+|...|++++|+..|+++++++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4568888899999999999999988742 2 4467789999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHH-HHHHHHhC
Q 009967 455 VAGKWDNVSN-IRREMKEK 472 (521)
Q Consensus 455 ~~g~~~~A~~-~~~~m~~~ 472 (521)
+.|+++++.. .++.|...
T Consensus 397 ~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999988764 55655433
No 169
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.41 E-value=0.00015 Score=66.39 Aligned_cols=231 Identities=15% Similarity=0.101 Sum_probs=139.5
Q ss_pred HhcCCh-HHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhhcc----------hHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 009967 216 SQTGRN-EEAVNLFIEMLREGLVPNHST-LPCAIIAAANIAA----------LGMGKSFHACAVKFLGKLDVFVGNSLIS 283 (521)
Q Consensus 216 ~~~~~~-~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 283 (521)
.+.|.+ ++|+.++..+... .|+..| ++.--..+...+. ++.+..+++.+....++ +..+|+.-..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 345555 4678888887764 355443 2222222222222 56777777777776655 6677777666
Q ss_pred HHHhcC--CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh---
Q 009967 284 FYAKCG--SMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGR-GEEAIEFFERMRINGIRPNGVTLLGLLWACNHT--- 354 (521)
Q Consensus 284 ~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--- 354 (521)
++.+.+ .++++..+++.+.+ .|..+|+.-.-.+...|. ++++++.+.++.+.. +-|...|+.....+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 777777 47888888888875 566777777777777777 588888888888754 34556666555554443
Q ss_pred -----------ccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhc-----------CCHHHHHHHHhhCC-CCCCHHH
Q 009967 355 -----------GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS-----------GRFKEAKEFLYDLP-FDPGIGF 411 (521)
Q Consensus 355 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~-~~~~~~~ 411 (521)
+.++++.+.+.......+ -|...|+.+-..+.+. +.++++++.++++. ..||. .
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P--~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~ 272 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDP--NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-K 272 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-H
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-c
Confidence 457778888877765555 4555565554444443 34556666665532 34443 2
Q ss_pred HHHHHHH-----HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 009967 412 WKALLGG-----CQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL 453 (521)
Q Consensus 412 ~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 453 (521)
|..+..+ ....|..+++...+.++++++|....-|..+...+
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 3222221 12345666777777777777776665555554443
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.41 E-value=7.3e-07 Score=87.53 Aligned_cols=118 Identities=10% Similarity=0.004 Sum_probs=94.3
Q ss_pred HHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 009967 349 WACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVE 426 (521)
Q Consensus 349 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~ 426 (521)
..+...|++++|.+.++++.+..+ .+...+..+..+|.+.|++++|++.+++. ...| +...+..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 345677888888888888875554 35678888889999999999999888874 2334 5678889999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHH--HHhcCChHHHHHHHHH
Q 009967 427 LGEFAARRILALDPEDVSSYVMLSNA--LSVAGKWDNVSNIRRE 468 (521)
Q Consensus 427 ~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 468 (521)
+|++.|+++++..|+++.++..++.+ +.+.|++++|++.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999888 8899999999999884
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.39 E-value=1.4e-06 Score=68.50 Aligned_cols=89 Identities=13% Similarity=0.173 Sum_probs=48.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC-CCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chHHHHHHHHHH
Q 009967 383 MVDLLSRSGRFKEAKEFLYDLP-FDPG-I---GFWKALLGGCQIHSNVELGEFAARRILALDPED---VSSYVMLSNALS 454 (521)
Q Consensus 383 l~~~~~~~g~~~~A~~~~~~~~-~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 454 (521)
+...+...|++++|...++++. ..|+ . ..+..+..++...|++++|+..|+++++..|++ +.++..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 3444445555555555554421 1121 1 244445555556666666666666666666655 455666666666
Q ss_pred hcCChHHHHHHHHHHHh
Q 009967 455 VAGKWDNVSNIRREMKE 471 (521)
Q Consensus 455 ~~g~~~~A~~~~~~m~~ 471 (521)
..|++++|...++++.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666666554
No 172
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.39 E-value=2.3e-06 Score=79.92 Aligned_cols=117 Identities=9% Similarity=-0.022 Sum_probs=95.8
Q ss_pred hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC----------------HHHHHHHH
Q 009967 354 TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG----------------IGFWKALL 416 (521)
Q Consensus 354 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----------------~~~~~~l~ 416 (521)
.+++++|...++......+ .+...+..+...|.+.|++++|...|++.. ..|+ ...|..+.
T Consensus 126 L~~~~~A~~~~~~a~~~~p--~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKL--EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEEECCCCGGGCCHHHHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 3455556655555432221 235578889999999999999999998742 2333 47899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 417 GGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
.++...|++++|+..++++++++|+++.+|..++.+|...|++++|+..|++..+.
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998764
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.39 E-value=9.8e-05 Score=67.60 Aligned_cols=217 Identities=7% Similarity=-0.038 Sum_probs=154.3
Q ss_pred Hhhcch-HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC----------HHHHHHHHhhcCC---CChhHHHHHHHHH
Q 009967 251 ANIAAL-GMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS----------MEDSLLVFDKLTE---RNIVTWNAVICGY 316 (521)
Q Consensus 251 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~ 316 (521)
.+.|.+ ++|..+.+.++..++. +..+++.--.++...+. ++++..+++.+.. .+..+|+.-...+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344444 4788888888887665 55555554444433332 6788888888764 5667888888888
Q ss_pred HHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhcc-HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhc---
Q 009967 317 AQNG--RGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGL-VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS--- 390 (521)
Q Consensus 317 ~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 390 (521)
...+ ++++++.+++.+.+.. +-|..+|+.-...+...|. ++++.+.++++....+ -|...|+....++.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p--~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF--SNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhhhc
Confidence 8877 4899999999999864 3466777776666777787 6899999999986665 5666777666666554
Q ss_pred -----------CCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCchHH
Q 009967 391 -----------GRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIH-----------SNVELGEFAARRILALDPEDVSSY 446 (521)
Q Consensus 391 -----------g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~ 446 (521)
+.++++++.+.+.. . +.|..+|+-+-..+... +.++++++.++++++..|++...+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 45788888887742 2 44666787666665554 457899999999999999886655
Q ss_pred HHHHHHH---HhcCChHHHHHHHHHHHh
Q 009967 447 VMLSNAL---SVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 447 ~~l~~~~---~~~g~~~~A~~~~~~m~~ 471 (521)
..++... ...|..+++...+.++.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 5544332 245778888999998875
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.34 E-value=1.1e-05 Score=63.19 Aligned_cols=106 Identities=12% Similarity=0.027 Sum_probs=71.9
Q ss_pred HHHHHHhhccHHHHHHHHHHchHhCCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHH
Q 009967 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLK-PEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPG----IGFWKALLGGCQ 420 (521)
Q Consensus 347 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~ 420 (521)
+...+...|++++|...|+.+....+..+. ...+..+..++.+.|++++|...+++.. ..|+ ...+..+..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 444566677777777777777644442221 1356667777777777777777777642 2233 456777788888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 009967 421 IHSNVELGEFAARRILALDPEDVSSYVMLSNA 452 (521)
Q Consensus 421 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 452 (521)
..|++++|+..|++++...|+++.........
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 88999999999999999999877665544443
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.32 E-value=9.8e-06 Score=63.37 Aligned_cols=109 Identities=9% Similarity=-0.021 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C----CCC----HHHHH
Q 009967 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F----DPG----IGFWK 413 (521)
Q Consensus 343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~~~----~~~~~ 413 (521)
.+..+...+...|++++|...++++....+ .+...+..+..+|...|++++|...+++.. . .++ ...+.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP--TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 344445555555566666665555543332 234455555556666666666666555431 1 122 44666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 009967 414 ALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS 454 (521)
Q Consensus 414 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 454 (521)
.+...+...|++++|...|+++++..| ++.....+..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 777778888888888888888888877 5666666665544
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.32 E-value=2.9e-06 Score=66.48 Aligned_cols=96 Identities=6% Similarity=0.023 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------chHHH
Q 009967 377 PEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPED-------VSSYV 447 (521)
Q Consensus 377 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~ 447 (521)
...+..+...+...|++++|...+++.. .+.+...+..+...+...|++++|+..+++++...|++ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3567888999999999999999998742 24567788899999999999999999999999988766 88999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 448 MLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 448 ~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
.++.++...|++++|...+++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999998764
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.31 E-value=7.9e-07 Score=68.68 Aligned_cols=82 Identities=10% Similarity=0.028 Sum_probs=45.0
Q ss_pred cCCHHHHHHHHhhC-CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHH
Q 009967 390 SGRFKEAKEFLYDL-PF---DPG-IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSN 464 (521)
Q Consensus 390 ~g~~~~A~~~~~~~-~~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 464 (521)
.|++++|+..|++. .. .|+ ...+..+..++...|++++|+..|+++++.+|+++.++..++.++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 34455555555442 11 122 23455555556666666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 009967 465 IRREMKE 471 (521)
Q Consensus 465 ~~~~m~~ 471 (521)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666544
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.30 E-value=3.9e-06 Score=63.65 Aligned_cols=99 Identities=14% Similarity=0.044 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC---CHHHHHHHHHH
Q 009967 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP---GIGFWKALLGG 418 (521)
Q Consensus 343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~ 418 (521)
.+..+...+...|++++|...++++....+ .+...+..+..++...|++++|.+.+++. ...| +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP--EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 444555566666677777777766654443 34556666777777777777777777653 2223 46677777777
Q ss_pred HHhc-CCHHHHHHHHHHHHhcCCCCc
Q 009967 419 CQIH-SNVELGEFAARRILALDPEDV 443 (521)
Q Consensus 419 ~~~~-g~~~~A~~~~~~~~~~~p~~~ 443 (521)
+... |++++|++.+++++...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888877543
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.29 E-value=4.3e-06 Score=79.00 Aligned_cols=138 Identities=9% Similarity=0.005 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHH
Q 009967 307 VTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDL 386 (521)
Q Consensus 307 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (521)
..+..+...+.+.|++++|...|++..+. .|... .....+ ......+ .+..+|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~-------~~~~~~~--~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDA-------DGAKLQP--VALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHH-------HHGGGHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChH-------HHHHHHH--HHHHHHHHHHHH
Confidence 34666667777777777777777766541 01000 000111 1100111 234578889999
Q ss_pred HHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHH
Q 009967 387 LSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSN 464 (521)
Q Consensus 387 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 464 (521)
|.+.|++++|++.+++. ...| +...+..+..++...|++++|+..|+++++++|+++.++..+..++...++.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999874 3344 567889999999999999999999999999999999999999999999988887765
Q ss_pred H
Q 009967 465 I 465 (521)
Q Consensus 465 ~ 465 (521)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 3
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.29 E-value=5.1e-06 Score=64.48 Aligned_cols=97 Identities=14% Similarity=0.043 Sum_probs=62.8
Q ss_pred HHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhc
Q 009967 345 LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDL-PFDP-GIGFWKALLGGCQIH 422 (521)
Q Consensus 345 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 422 (521)
..+...+...|++++|...|+++....+ .+...+..+..++.+.|++++|+..+++. ...| +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEP--EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444556677777777777777765544 35556777777777777777777777663 2233 455777777777788
Q ss_pred CCHHHHHHHHHHHHhcCCCCc
Q 009967 423 SNVELGEFAARRILALDPEDV 443 (521)
Q Consensus 423 g~~~~A~~~~~~~~~~~p~~~ 443 (521)
|++++|+..++++++.+|++.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888777543
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.28 E-value=4.6e-06 Score=81.83 Aligned_cols=118 Identities=10% Similarity=-0.016 Sum_probs=77.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccH
Q 009967 281 LISFYAKCGSMEDSLLVFDKLTE---RNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV 357 (521)
Q Consensus 281 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 357 (521)
+...+.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|...+++..+.. +.+..++..+..++...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 34456677788888888877653 345677777778888888888888888777753 23455777777777788888
Q ss_pred HHHHHHHHHchHhCCCCCChhHHHHHHHH--HHhcCCHHHHHHHHh
Q 009967 358 EKGYSYFSQAKLEDPGMLKPEHYACMVDL--LSRSGRFKEAKEFLY 401 (521)
Q Consensus 358 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 401 (521)
++|...|+++.+..+-.+ ..+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDK--DAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCT--THHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888887765554323 334444444 667777777777776
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.27 E-value=4.6e-06 Score=68.59 Aligned_cols=78 Identities=13% Similarity=-0.006 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHH
Q 009967 377 PEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDV-SSYVMLSNAL 453 (521)
Q Consensus 377 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~ 453 (521)
...|..+..+|.+.|++++|+..+++.. . +.+...|..+..++...|++++|+..|+++++++|+++ .+...+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4578888899999999999999888742 2 44577899999999999999999999999999999887 4455554443
Q ss_pred H
Q 009967 454 S 454 (521)
Q Consensus 454 ~ 454 (521)
.
T Consensus 143 ~ 143 (162)
T 3rkv_A 143 E 143 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.27 E-value=3.2e-06 Score=69.06 Aligned_cols=93 Identities=17% Similarity=0.113 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------Cch
Q 009967 379 HYACMVDLLSRSGRFKEAKEFLYDLP----FDPG----IGFWKALLGGCQIHSNVELGEFAARRILALDPE------DVS 444 (521)
Q Consensus 379 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~ 444 (521)
++..+...+...|++++|.+.+++.. ..++ ...+..+...+...|++++|.+.++++++..+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 44455555556666666655555421 0111 235566667777888888888888887764221 245
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967 445 SYVMLSNALSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 471 (521)
++..++.++...|++++|...+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 678888999999999999999888764
No 184
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=8.1e-05 Score=72.05 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=19.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 009967 211 MIGGYSQTGRNEEAVNLFIEMLREG 235 (521)
Q Consensus 211 l~~~~~~~~~~~~a~~~~~~m~~~~ 235 (521)
-...+.+.|++++|++.|..+.+..
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~ 34 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKD 34 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 3456778889999999998888754
No 185
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=2.7e-05 Score=75.42 Aligned_cols=153 Identities=10% Similarity=0.018 Sum_probs=87.1
Q ss_pred HHHHHcCCCHHHHHHHHhhCCC--C---C---------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC
Q 009967 181 ICGLLKRERFEDALKLFQEMPH--R---N---------------VVSWNAMIGGYSQTGRNEEAVNLFIEMLREG-LVPN 239 (521)
Q Consensus 181 i~~~~~~g~~~~a~~~~~~~~~--~---~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~ 239 (521)
...+.+.|++++|++.|..+.+ + + ..++..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567889999999999988753 1 1 1247788899999999999999998876531 1122
Q ss_pred hhhH----HHHHHHHHhhcchHHHHHHHHHHHHc----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----C--
Q 009967 240 HSTL----PCAIIAAANIAALGMGKSFHACAVKF----LGKL-DVFVGNSLISFYAKCGSMEDSLLVFDKLTE----R-- 304 (521)
Q Consensus 240 ~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-- 304 (521)
..+. ..+-..+...|+.+.+..++...... +..+ ...++..+...|...|++++|..+++.+.. .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2111 11112223345566666665554432 1111 123445555566666666666655554431 0
Q ss_pred ---ChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009967 305 ---NIVTWNAVICGYAQNGRGEEAIEFFERMR 333 (521)
Q Consensus 305 ---~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 333 (521)
...++..++..|...|++++|..++++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 11345555555556666666666555543
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.20 E-value=3.2e-06 Score=78.94 Aligned_cols=148 Identities=9% Similarity=-0.060 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHH
Q 009967 306 IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVD 385 (521)
Q Consensus 306 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 385 (521)
...+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345677777788889999999999987764 355432 233444444443321 136888899
Q ss_pred HHHhcCCHHHHHHHHhhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH-HhcCChHHH
Q 009967 386 LLSRSGRFKEAKEFLYDLP-FD-PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNAL-SVAGKWDNV 462 (521)
Q Consensus 386 ~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A 462 (521)
+|.+.|++++|+..+++.. .. .+...|..+..++...|++++|+..|+++++++|+++.++..+..+. ...+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998742 33 46778899999999999999999999999999999999988888874 455677888
Q ss_pred HHHHHHHHhCC
Q 009967 463 SNIRREMKEKG 473 (521)
Q Consensus 463 ~~~~~~m~~~g 473 (521)
...|++|.+..
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888876543
No 187
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.15 E-value=1.3e-05 Score=59.60 Aligned_cols=66 Identities=17% Similarity=0.075 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 407 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
.+...+..+...+...|++++|+..|+++++.+|+++.+|..++.+|...|++++|+..+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456688888999999999999999999999999999999999999999999999999999987654
No 188
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.15 E-value=1.2e-05 Score=78.46 Aligned_cols=64 Identities=9% Similarity=0.023 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 409 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|+..|++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4578888999999999999999999999999999999999999999999999999999998764
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.14 E-value=2.9e-05 Score=75.71 Aligned_cols=123 Identities=12% Similarity=0.045 Sum_probs=96.0
Q ss_pred HHhhccHHHHHHHHHHchHhCC--C---CCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCC---------CCCCHH-HHHH
Q 009967 351 CNHTGLVEKGYSYFSQAKLEDP--G---MLK-PEHYACMVDLLSRSGRFKEAKEFLYDLP---------FDPGIG-FWKA 414 (521)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~~~~~--~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~-~~~~ 414 (521)
+...|++++|+.++++...... + .|+ ..+++.|..+|...|++++|+.++++.. ..|+.. +++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4577889999888887653321 1 122 3478889999999999999999887631 234433 7888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCchH---HHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967 415 LLGGCQIHSNVELGEFAARRILA-----LDPEDVSS---YVMLSNALSVAGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~g 473 (521)
|...|...|++++|+.+++++++ .+|++|.+ ...+..++...|++++|..+++++.+..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 57887765 4577888889999999999999998744
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.13 E-value=8.8e-06 Score=65.28 Aligned_cols=107 Identities=10% Similarity=-0.046 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHchHhCCCCC-----C-----hhHHHHHHHHHHhcCCHHHHHHHHhhC-CC-------
Q 009967 344 LLGLLWACNHTGLVEKGYSYFSQAKLEDPGML-----K-----PEHYACMVDLLSRSGRFKEAKEFLYDL-PF------- 405 (521)
Q Consensus 344 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------- 405 (521)
+......+...|++++|...|++.....+-.| + ...|..+..++.+.|++++|+..+++. ..
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 33444445566666666666666553333211 1 226777777788888888877777652 23
Q ss_pred CCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 009967 406 DPGI-GFW----KALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLS 450 (521)
Q Consensus 406 ~~~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 450 (521)
.|+. ..| .....++...|++++|+..|++++++.|++...+..+.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 6764 477 88999999999999999999999999998776544443
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.12 E-value=1.9e-05 Score=74.62 Aligned_cols=113 Identities=8% Similarity=-0.005 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q 009967 341 GVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDP-GIGFWKALLGGC 419 (521)
Q Consensus 341 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~ 419 (521)
...+..+...+...|++++|...|+++....+ .. ......+++.. ..| +...|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~---~~----------~~~~~~~~~~~------~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE---GS----------RAAAEDADGAK------LQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---HH----------HHHSCHHHHGG------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh---cC----------ccccChHHHHH------HHHHHHHHHHHHHHHH
Confidence 34566677777788888888888877753211 00 00011111111 122 345788899999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 420 QIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
...|++++|+..++++++.+|+++.++..++.+|...|++++|+..|++..+.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998754
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.10 E-value=3.9e-06 Score=64.69 Aligned_cols=94 Identities=16% Similarity=0.093 Sum_probs=62.2
Q ss_pred hccHHHHHHHHHHchHhCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 009967 354 TGLVEKGYSYFSQAKLEDP-GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEF 430 (521)
Q Consensus 354 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~ 430 (521)
.|++++|...|+++..... -+.+...+..+..+|...|++++|...+++.. . +.+...+..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4666777777777652210 01234466777777777888888887777642 2 3345677778888888889999999
Q ss_pred HHHHHHhcCCCCchHHH
Q 009967 431 AARRILALDPEDVSSYV 447 (521)
Q Consensus 431 ~~~~~~~~~p~~~~~~~ 447 (521)
.++++++..|+++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999888887776543
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.08 E-value=2.5e-06 Score=64.83 Aligned_cols=93 Identities=12% Similarity=-0.087 Sum_probs=74.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chHHH
Q 009967 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPED------VSSYV 447 (521)
Q Consensus 376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 447 (521)
+...+..+...+.+.|++++|.+.+++.. . +.+...+..+..++...|++++|+..++++++.+|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 45567777888888888888888887742 2 3456788888889999999999999999999999987 77888
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 009967 448 MLSNALSVAGKWDNVSNIRRE 468 (521)
Q Consensus 448 ~l~~~~~~~g~~~~A~~~~~~ 468 (521)
.++.++...|++++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888887777665544
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.06 E-value=1.3e-05 Score=74.85 Aligned_cols=152 Identities=9% Similarity=-0.025 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhh
Q 009967 275 VFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHT 354 (521)
Q Consensus 275 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 354 (521)
...+..+...+.+.|++++|...|++..+.+.... .+...++.+++...+. ...+..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45677788889999999999999998765222111 1122233333332221 13677788888899
Q ss_pred ccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCCH-HHHHHHHHH-HHhcCCHHHHHHH
Q 009967 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPGI-GFWKALLGG-CQIHSNVELGEFA 431 (521)
Q Consensus 355 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~-~~~~g~~~~A~~~ 431 (521)
|++++|...++++....+ .+...|..+..+|...|++++|...|++.. ..|+. ..+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~~p--~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEE--KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998875554 466788889999999999999999998853 45543 355555544 3445778888899
Q ss_pred HHHHHhcCCCCc
Q 009967 432 ARRILALDPEDV 443 (521)
Q Consensus 432 ~~~~~~~~p~~~ 443 (521)
|++++...|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999888654
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.05 E-value=0.00021 Score=71.41 Aligned_cols=168 Identities=12% Similarity=-0.012 Sum_probs=125.6
Q ss_pred HHHHHHHHhhcCC---CChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhc--
Q 009967 291 MEDSLLVFDKLTE---RNIVTWNAVICGYAQNGR----------GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTG-- 355 (521)
Q Consensus 291 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-- 355 (521)
.++|.+.++.+.+ .+..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 4566777777764 234566666666666565 888888888888753 224557777667777778
Q ss_pred cHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc----------
Q 009967 356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG-RFKEAKEFLYDLP-FDP-GIGFWKALLGGCQIH---------- 422 (521)
Q Consensus 356 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~---------- 422 (521)
+++++.+.++++.+..+ -+...|+.-..++.+.| .++++++.++++. ..| +..+|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d~--~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADE--RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhcc--ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 67889999998886665 46667777777777888 8888888888753 333 566787777765552
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHH
Q 009967 423 ----SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDN 461 (521)
Q Consensus 423 ----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 461 (521)
+.++++++.+++++..+|++..+|..+...+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999888555
No 196
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.02 E-value=4.5e-05 Score=55.54 Aligned_cols=69 Identities=7% Similarity=0.023 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967 406 DPGIGFWKALLGGCQIHSN---VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474 (521)
Q Consensus 406 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 474 (521)
+++...+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|+.+|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567778888888765544 79999999999999999999999999999999999999999999987654
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.00 E-value=4e-05 Score=55.45 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 009967 377 PEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALS 454 (521)
Q Consensus 377 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 454 (521)
...+..+...+...|++++|...+++.. . +.+...+..+...+...|++++|+..++++++.+|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3456667777777777777777776632 2 3355677778888888888889999999988888888888888888876
Q ss_pred hcC
Q 009967 455 VAG 457 (521)
Q Consensus 455 ~~g 457 (521)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 198
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.00 E-value=3.3e-05 Score=62.86 Aligned_cols=132 Identities=14% Similarity=0.055 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 009967 206 VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLV-PNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISF 284 (521)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 284 (521)
.++..+...+...|++++|...+++....... ++... ...++..+...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~~~~~~~l~~~ 58 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA-------------------------------ERIAYSNLGNA 58 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH-------------------------------HHHHHHHHHHH
Confidence 35666667777777777777777766542100 11000 01233444555
Q ss_pred HHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHH
Q 009967 285 YAKCGSMEDSLLVFDKLTE-----RN----IVTWNAVICGYAQNGRGEEAIEFFERMRIN----GIRP-NGVTLLGLLWA 350 (521)
Q Consensus 285 ~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~ 350 (521)
+...|++++|...+++..+ .+ ...+..+...+...|++++|...+++..+. +..+ ...++..+...
T Consensus 59 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 138 (164)
T 3ro3_A 59 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA 138 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHH
Confidence 5555555555555554432 11 234555666666677777777776665431 1111 12355666667
Q ss_pred HHhhccHHHHHHHHHHch
Q 009967 351 CNHTGLVEKGYSYFSQAK 368 (521)
Q Consensus 351 ~~~~~~~~~a~~~~~~~~ 368 (521)
+...|++++|...+++..
T Consensus 139 ~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 139 YTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHTCHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 777778887777777664
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.99 E-value=9.7e-05 Score=55.73 Aligned_cols=65 Identities=9% Similarity=0.023 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 408 GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 408 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
+...+..+...+...|++++|+..|+++++..|+++.++..++.++...|++++|+..+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45678888889999999999999999999999999999999999999999999999999998764
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.97 E-value=2.8e-05 Score=75.84 Aligned_cols=115 Identities=11% Similarity=0.080 Sum_probs=89.6
Q ss_pred HHHhcCCHHHHHHHHhhCC------C---CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCch---HHH
Q 009967 386 LLSRSGRFKEAKEFLYDLP------F---DPGI-GFWKALLGGCQIHSNVELGEFAARRILA-----LDPEDVS---SYV 447 (521)
Q Consensus 386 ~~~~~g~~~~A~~~~~~~~------~---~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~ 447 (521)
.+...|++++|+.++++.. . .|+. .+++.|+.+|...|++++|+.+++++++ .+|++|. +++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4567899999998887631 2 3333 3889999999999999999999999987 4676654 688
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcHHHHHHHHHHHHHHHh
Q 009967 448 MLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIRE 518 (521)
Q Consensus 448 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 518 (521)
.|+..|...|++++|..++++..+--.. .-| ..||.++++...+.+.+..++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-----------------~lG-~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV-----------------THG-PSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HTC-TTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-----------------HhC-CCChHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999987643111 112 4799999999988888866654
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.95 E-value=2.8e-05 Score=62.21 Aligned_cols=97 Identities=12% Similarity=0.131 Sum_probs=69.7
Q ss_pred hhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009967 353 HTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAA 432 (521)
Q Consensus 353 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 432 (521)
+.+.+++|...+++..+..+ .+...|..+..++...++++.+...+ +.+++|+..|
T Consensus 14 r~~~feeA~~~~~~Ai~l~P--~~aea~~n~G~~l~~l~~~~~g~~al----------------------~~~~eAi~~l 69 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNP--LDADNLTRWGGVLLELSQFHSISDAK----------------------QMIQEAITKF 69 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHSCHHHHH----------------------HHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhcccchhhhhH----------------------hHHHHHHHHH
Confidence 34456666666666654444 34455555555655555544333322 1378999999
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhcC-----------ChHHHHHHHHHHHhCC
Q 009967 433 RRILALDPEDVSSYVMLSNALSVAG-----------KWDNVSNIRREMKEKG 473 (521)
Q Consensus 433 ~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~g 473 (521)
+++++++|++..+|..++.+|...| ++++|++.|++..+..
T Consensus 70 e~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 70 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 9999999999999999999999875 8999999999988653
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.89 E-value=6.7e-05 Score=57.29 Aligned_cols=66 Identities=14% Similarity=0.072 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 407 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
.+...+..+...+...|++++|+..|+++++.+|+++.+|..++.+|...|++++|...|++..+.
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346677778888888888888888888888888888888888888888888888888888887653
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.82 E-value=0.00029 Score=55.79 Aligned_cols=112 Identities=9% Similarity=-0.054 Sum_probs=65.8
Q ss_pred ccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 009967 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQI----HSNVELGEF 430 (521)
Q Consensus 355 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 430 (521)
+++++|..+|++.. ..+ .+. .. |...|...+.+++|.+.|++.....+...+..|...|.. .+|+++|++
T Consensus 9 ~d~~~A~~~~~~aa-~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKAC-ELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHH-HTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHH-cCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 34555555555553 222 111 12 445555555555555555553323445555555555555 567777777
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 009967 431 AARRILALDPEDVSSYVMLSNALSV----AGKWDNVSNIRREMKEKGM 474 (521)
Q Consensus 431 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 474 (521)
.|+++.+. .++..+..++..|.. .+++++|...|++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777665 366777777777777 6777777777777776664
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.79 E-value=0.00028 Score=50.78 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 409 IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 409 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
...+..+...+...|++++|+..++++++..|+++.++..++.++...|++++|...+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4577888888999999999999999999999999999999999999999999999999998764
No 205
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.76 E-value=9.7e-05 Score=70.93 Aligned_cols=116 Identities=12% Similarity=0.184 Sum_probs=86.9
Q ss_pred HHHHHhcCCHHHHHHHHhhCC------CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCch---H
Q 009967 384 VDLLSRSGRFKEAKEFLYDLP------FDPG----IGFWKALLGGCQIHSNVELGEFAARRILA-----LDPEDVS---S 445 (521)
Q Consensus 384 ~~~~~~~g~~~~A~~~~~~~~------~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~ 445 (521)
+..+.+.|++++|+.++++.. ..|+ ..+++.++.+|...|++++|+.+++++++ .+|++|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556778888887776521 2333 23788888889999999999999999887 4566654 6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcHHHHHHHHHHHHHHH
Q 009967 446 YVMLSNALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLRSCTEQIR 517 (521)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 517 (521)
++.|+..|...|++++|..++++..+--.. .-| ..||..++++..|++...+++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~-----------------~lG-~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV-----------------THG-REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HTC-TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-----------------hcC-CCChHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999987642110 112 479999999999999888776
No 206
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.68 E-value=0.00093 Score=66.74 Aligned_cols=149 Identities=11% Similarity=-0.016 Sum_probs=120.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhcc----------HHHHHHHHHHchHhCCCCCChhHHHHHHHHHH
Q 009967 320 GRGEEAIEFFERMRINGIRPNG-VTLLGLLWACNHTGL----------VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLS 388 (521)
Q Consensus 320 ~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (521)
...++|++.++++.... |+. ..|+.--.++...|+ ++++..+++.+....+ -+..+|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p--K~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHH
Confidence 34578899999998853 554 466665556666666 8999999999986665 46667887788888
Q ss_pred hcC--CHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc-------
Q 009967 389 RSG--RFKEAKEFLYDLP--FDPGIGFWKALLGGCQIHS-NVELGEFAARRILALDPEDVSSYVMLSNALSVA------- 456 (521)
Q Consensus 389 ~~g--~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 456 (521)
+.| +++++++.++++. ...+..+|+.-...+...| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 889 7799999999863 2557778998888888888 999999999999999999999999999998874
Q ss_pred -------CChHHHHHHHHHHHhC
Q 009967 457 -------GKWDNVSNIRREMKEK 472 (521)
Q Consensus 457 -------g~~~~A~~~~~~m~~~ 472 (521)
++++++++.+++....
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhh
Confidence 5678999998887654
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.66 E-value=0.0001 Score=70.65 Aligned_cols=103 Identities=12% Similarity=0.034 Sum_probs=76.2
Q ss_pred cCCHHHHHHHHhhC-----C-CC---CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCch---HHHHHHH
Q 009967 390 SGRFKEAKEFLYDL-----P-FD---PGI-GFWKALLGGCQIHSNVELGEFAARRILA-----LDPEDVS---SYVMLSN 451 (521)
Q Consensus 390 ~g~~~~A~~~~~~~-----~-~~---~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~~l~~ 451 (521)
.|++++|+.++++. . +. |+. .+++.|..+|...|++++|+.+++++++ .+|++|. +++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777777776652 1 13 332 3788899999999999999999999887 4666654 6888999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCccCCcceEEEECCEEEEEecCCCCCCCcHHHHHHHH
Q 009967 452 ALSVAGKWDNVSNIRREMKEKGMTRVPGCSWIEIKSKVHVFVTGDRNHHMNDEIYAVLR 510 (521)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 510 (521)
.|...|++++|..++++..+--.. .-| ..||.++++...|+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~-----------------~lG-~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEV-----------------AHG-KDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-----------------HTC-TTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHH-----------------HcC-CCChHHHHHHHHHh
Confidence 999999999999999987643111 112 47898888877765
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.61 E-value=0.00031 Score=53.43 Aligned_cols=80 Identities=14% Similarity=-0.075 Sum_probs=51.9
Q ss_pred HHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009967 360 GYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-F-DPGIGFWKALLGGCQIHSNVELGEFAARRILA 437 (521)
Q Consensus 360 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (521)
|...|+++....+ .+...+..+..+|...|++++|...+++.. . +.+...|..+..++...|++++|+..|+++++
T Consensus 4 a~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGT--DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555543332 345566667777777777777777776632 2 33455777777777788888888888888877
Q ss_pred cCCC
Q 009967 438 LDPE 441 (521)
Q Consensus 438 ~~p~ 441 (521)
..|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7663
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.58 E-value=0.0012 Score=52.22 Aligned_cols=112 Identities=13% Similarity=0.001 Sum_probs=89.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh----cCCHHH
Q 009967 320 GRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR----SGRFKE 395 (521)
Q Consensus 320 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 395 (521)
+++++|...|++..+.| .|+.. +...|...+.+++|.++|++.. ..+ ++..+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa-~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKAC-ELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHH-cCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999988877 44444 6666777788888999999886 443 66778888888887 789999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 009967 396 AKEFLYDLPFDPGIGFWKALLGGCQI----HSNVELGEFAARRILALDP 440 (521)
Q Consensus 396 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 440 (521)
|.+.|++.....+...+..|...|.. .+|.++|+..|+++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999886545677788888888888 8899999999999988753
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.56 E-value=0.00087 Score=53.56 Aligned_cols=126 Identities=14% Similarity=0.086 Sum_probs=83.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccH----------HHHHHHHHHchHhCCCCCChhHHHHHHHH
Q 009967 317 AQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLV----------EKGYSYFSQAKLEDPGMLKPEHYACMVDL 386 (521)
Q Consensus 317 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (521)
.+.+.+++|.+.++...+.. +.+...|..+..++...+++ ++|+..|+++.+..+ .+...|..+..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP--~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--KKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc--CcHHHHHHHHHH
Confidence 34566888888888888753 33566777777777777654 578888887775554 345567777777
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHH
Q 009967 387 LSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIR 466 (521)
Q Consensus 387 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 466 (521)
|...|++ .|+.. ...|++++|++.|+++++++|++......+-. .++|.++.
T Consensus 90 y~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~-------~~ka~el~ 141 (158)
T 1zu2_A 90 YTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM-------TAKAPQLH 141 (158)
T ss_dssp HHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH-------HHTHHHHH
T ss_pred HHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH-------HHhCHhcc
Confidence 7766643 34432 11378999999999999999977544333322 25556655
Q ss_pred HHHHhCC
Q 009967 467 REMKEKG 473 (521)
Q Consensus 467 ~~m~~~g 473 (521)
-.+...+
T Consensus 142 ~~~~~~~ 148 (158)
T 1zu2_A 142 AEAYKQG 148 (158)
T ss_dssp HHHHHSS
T ss_pred Ccccccc
Confidence 5555443
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.42 E-value=0.00053 Score=50.42 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=44.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC-CCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 009967 383 MVDLLSRSGRFKEAKEFLYDLP-FDP-GIG-FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSY 446 (521)
Q Consensus 383 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 446 (521)
....+.+.|++++|.+.+++.. ..| +.. .+..+..++...|++++|+..|+++++.+|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4556667777777777777642 233 455 677777777777777777777777777777776665
No 212
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.39 E-value=1.8e-06 Score=80.56 Aligned_cols=250 Identities=10% Similarity=0.095 Sum_probs=142.8
Q ss_pred ChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHH
Q 009967 57 KFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATK 136 (521)
Q Consensus 57 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 136 (521)
++++|.+.-++...| ..|+.|..+....+...+|++.|-+ .-|+..|..++.++.+.|.++.-.+++....+
T Consensus 40 ~ldRa~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 40 NLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp CSTTTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred ccHHHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344444444444333 5677777777777777777665532 13555667777777777777777777766655
Q ss_pred hCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCC--------------
Q 009967 137 VGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPH-------------- 202 (521)
Q Consensus 137 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------------- 202 (521)
..-.| .+=+.|+-+|++.|++.+-++++ ..||..-...+..-|...|.++.|.-+|..+..
T Consensus 112 ~~ke~--~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~y 186 (624)
T 3lvg_A 112 KARES--YVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEY 186 (624)
T ss_dssp TCCST--TTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGG
T ss_pred Hhccc--ccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 43233 33346677777777755432222 125666666677777777777777777666541
Q ss_pred ----------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCC
Q 009967 203 ----------RNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGK 272 (521)
Q Consensus 203 ----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 272 (521)
.++.||..+-.+|...+.+.-|.-.--.+.- .|| .+..++..|-..|.+++...+++...... .
T Consensus 187 q~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-r 260 (624)
T 3lvg_A 187 QAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-R 260 (624)
T ss_dssp GSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-T
T ss_pred HHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-c
Confidence 3667788888888877777655332222221 111 22234445556666666666666555321 2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----------CChhHHHHHHHHHHHcCChHHHH
Q 009967 273 LDVFVGNSLISFYAKCGSMEDSLLVFDKLTE-----------RNIVTWNAVICGYAQNGRGEEAI 326 (521)
Q Consensus 273 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~A~ 326 (521)
....+|+-|.-.|++- ++++..+.++..-. .....|.-++-.|.+-.++|.|.
T Consensus 261 AHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 261 AHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 3566667666666654 34444444443321 23345666776677666666554
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.31 E-value=0.00081 Score=64.40 Aligned_cols=95 Identities=9% Similarity=-0.020 Sum_probs=70.4
Q ss_pred hhccHHHHHHHHHHchHhCC--CC---CC-hhHHHHHHHHHHhcCCHHHHHHHHhhCC---------CCCCHH-HHHHHH
Q 009967 353 HTGLVEKGYSYFSQAKLEDP--GM---LK-PEHYACMVDLLSRSGRFKEAKEFLYDLP---------FDPGIG-FWKALL 416 (521)
Q Consensus 353 ~~~~~~~a~~~~~~~~~~~~--~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~-~~~~l~ 416 (521)
..|++++|..++++...... +. |+ ..+++.|..+|...|++++|+.++++.. ..|+.. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34678888888877653211 11 22 2468888999999999999998887731 244443 788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-----cCCCCchHHH
Q 009967 417 GGCQIHSNVELGEFAARRILA-----LDPEDVSSYV 447 (521)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~ 447 (521)
..|...|++++|+.+++++++ .+|++|.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999999988 5788887644
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.30 E-value=0.0027 Score=60.86 Aligned_cols=101 Identities=10% Similarity=-0.137 Sum_probs=75.7
Q ss_pred HHHHHhhccHHHHHHHHHHchHhCC--CCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCC---------CCCCHH-H
Q 009967 348 LWACNHTGLVEKGYSYFSQAKLEDP--GMLK----PEHYACMVDLLSRSGRFKEAKEFLYDLP---------FDPGIG-F 411 (521)
Q Consensus 348 l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~-~ 411 (521)
+..+...|++++|..++++...... +.|+ ..+++.|+.+|...|++++|+.++++.. ..|+.. +
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4446677889999998888763322 1122 2468888999999999999999888631 234433 7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCchHHHH
Q 009967 412 WKALLGGCQIHSNVELGEFAARRILA-----LDPEDVSSYVM 448 (521)
Q Consensus 412 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 448 (521)
++.|...|...|++++|+.+++++++ .+|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88899999999999999999999987 58888876544
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.29 E-value=0.024 Score=59.58 Aligned_cols=137 Identities=17% Similarity=0.110 Sum_probs=82.1
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHH
Q 009967 284 FYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSY 363 (521)
Q Consensus 284 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 363 (521)
.....|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3456788888888776663 556788888888888888888888887643 22333444446666665555
Q ss_pred HHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-
Q 009967 364 FSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPED- 442 (521)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~- 442 (521)
-+... ..+ + ++.-..+|.+.|++++|++++.++. ++++|..+.+. .+|..
T Consensus 730 ~~~a~-~~~---~---~~~A~~~~~~~g~~~~a~~~~~~~~-------------------~~~~A~~lA~~---~~~~~~ 780 (814)
T 3mkq_A 730 AKDAE-TTG---K---FNLAFNAYWIAGDIQGAKDLLIKSQ-------------------RFSEAAFLGST---YGLGDN 780 (814)
T ss_dssp HHHHH-HTT---C---HHHHHHHHHHHTCHHHHHHHHHHTT-------------------CHHHHHHHHHH---TTCCHH
T ss_pred HHHHH-HcC---c---hHHHHHHHHHcCCHHHHHHHHHHcC-------------------ChHHHHHHHHH---hCCChH
Confidence 54443 322 1 3444455666777777777766553 56666665543 33322
Q ss_pred --chHHHHHHHHHHhcCChH
Q 009967 443 --VSSYVMLSNALSVAGKWD 460 (521)
Q Consensus 443 --~~~~~~l~~~~~~~g~~~ 460 (521)
+.....+...+...|+.+
T Consensus 781 ~i~~~~~~~~~~L~~~~~~~ 800 (814)
T 3mkq_A 781 EVNDIVTKWKENLILNGKNT 800 (814)
T ss_dssp HHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHhccchh
Confidence 134444555555556543
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.28 E-value=0.00085 Score=49.54 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHc
Q 009967 308 TWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQA 367 (521)
Q Consensus 308 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 367 (521)
.+..+...|...|++++|...|++..+.. +.+...|..+..++...|++++|...|++.
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444444444444444444422 112234444444444444444444444444
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.24 E-value=0.0018 Score=51.12 Aligned_cols=88 Identities=16% Similarity=0.030 Sum_probs=51.9
Q ss_pred cHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhhCC-CC-C--CHHHHHHHHHHHHhcCCHHHH
Q 009967 356 LVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSG---RFKEAKEFLYDLP-FD-P--GIGFWKALLGGCQIHSNVELG 428 (521)
Q Consensus 356 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~g~~~~A 428 (521)
....+++-|.+.....+ ++..+...+..++++.+ +.++++.+++++- .. | +...+-.|.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~--~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 34455555555432222 56666666777777766 4456666666532 12 3 233455555666777777777
Q ss_pred HHHHHHHHhcCCCCchH
Q 009967 429 EFAARRILALDPEDVSS 445 (521)
Q Consensus 429 ~~~~~~~~~~~p~~~~~ 445 (521)
.+.++.+++.+|++..+
T Consensus 91 ~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHhcCCCCHHH
Confidence 77777777777766544
No 218
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.21 E-value=0.22 Score=49.80 Aligned_cols=114 Identities=9% Similarity=0.024 Sum_probs=62.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHH
Q 009967 320 GRGEEAIEFFERMRINGIRPNGVTL----LGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE 395 (521)
Q Consensus 320 ~~~~~A~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 395 (521)
.+.+.|...|....... ..+.... ..+.......+...++...+.... ... .+.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAI-MRS--QSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHH-HTC--CCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc-ccC--CChHHHHHHHHHHHHCCCHHH
Confidence 36788888887775432 2233222 222222333442345555555543 222 333334444455557788888
Q ss_pred HHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009967 396 AKEFLYDLPFDP--GIGFWKALLGGCQIHSNVELGEFAARRILA 437 (521)
Q Consensus 396 A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 437 (521)
|...|+.|...+ .....-=+..++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888876322 222222344456677888888888888764
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.20 E-value=0.023 Score=52.24 Aligned_cols=136 Identities=8% Similarity=-0.125 Sum_probs=72.6
Q ss_pred CChhHHHHHHHHHH--HcC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---hc-----cHHHHHHHHHHchH
Q 009967 304 RNIVTWNAVICGYA--QNG---RGEEAIEFFERMRINGIRPNG-VTLLGLLWACNH---TG-----LVEKGYSYFSQAKL 369 (521)
Q Consensus 304 ~~~~~~~~li~~~~--~~~---~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~---~~-----~~~~a~~~~~~~~~ 369 (521)
.+...|...+++.. ..+ +..+|..+|++..+. .|+- ..+..+..++.. .+ ........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 45666777665543 233 357888888888874 4653 344433333321 00 11111111111110
Q ss_pred hCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967 370 EDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP-FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE 441 (521)
Q Consensus 370 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 441 (521)
......++.+|..+...+...|++++|...+++.. ..|+...|..+...+...|++++|.+.|+++..++|.
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 11112455566666666666677777777766632 3466656656666666677777777777777777763
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.16 E-value=0.0026 Score=46.49 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=24.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967 419 CQIHSNVELGEFAARRILALDPEDVS-SYVMLSNALSVAGKWDNVSNIRREMK 470 (521)
Q Consensus 419 ~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~ 470 (521)
+...|++++|+..|+++++.+|+++. ++..++.+|...|++++|...|++..
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444444 44444444444444444444444443
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.12 E-value=0.0095 Score=54.79 Aligned_cols=134 Identities=10% Similarity=0.005 Sum_probs=93.0
Q ss_pred CCCHHHHHHHHHHH--Hh---hccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh---cC-----C---HHHHHHHHh
Q 009967 338 RPNGVTLLGLLWAC--NH---TGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR---SG-----R---FKEAKEFLY 401 (521)
Q Consensus 338 ~p~~~~~~~ll~~~--~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g-----~---~~~A~~~~~ 401 (521)
+.+...|...+++. .. ..+..+|..+|+++.+..| -....|..+..+|.- .+ . ...+.+...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP--~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSP--EFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 44556676666653 32 3446889999999986664 233445544444421 11 1 112222222
Q ss_pred hCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967 402 DLPF-DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474 (521)
Q Consensus 402 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 474 (521)
.+.. +.+..++..+...+...|++++|+..+++++.++| +...|..++..+.-.|++++|.+.+++......
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 2322 55677888888888888999999999999999997 677888999999999999999999999876543
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.85 E-value=0.0049 Score=54.30 Aligned_cols=85 Identities=13% Similarity=0.101 Sum_probs=64.6
Q ss_pred HHHHHHHhh-CCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHhc-CChHHH
Q 009967 394 KEAKEFLYD-LPFDPG---IGFWKALLGGCQI-----HSNVELGEFAARRILALDPED-VSSYVMLSNALSVA-GKWDNV 462 (521)
Q Consensus 394 ~~A~~~~~~-~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A 462 (521)
..|...+++ +...|+ -..|..+...|.. -|+.++|.++|+++++++|+. ..++..++..+++. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 344444444 234666 3366777777777 489999999999999999974 99999999999885 999999
Q ss_pred HHHHHHHHhCCCccCC
Q 009967 463 SNIRREMKEKGMTRVP 478 (521)
Q Consensus 463 ~~~~~~m~~~g~~~~~ 478 (521)
.+.+++......+..|
T Consensus 260 ~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 260 DEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHcCCCCCCC
Confidence 9999998877665434
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.85 E-value=0.097 Score=39.77 Aligned_cols=147 Identities=13% Similarity=0.022 Sum_probs=103.6
Q ss_pred HHHHHH--HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHH
Q 009967 310 NAVICG--YAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLL 387 (521)
Q Consensus 310 ~~li~~--~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (521)
..|+.+ +.-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+-+.+
T Consensus 9 kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi-------------- 71 (172)
T 1wy6_A 9 RKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL-------------- 71 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------
Confidence 344443 44568888888888887764 35666777776666666767777777766322322
Q ss_pred HhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHH
Q 009967 388 SRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRR 467 (521)
Q Consensus 388 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 467 (521)
..+|+.......+-.+. .+...++..+.....+|+-+.-.+++..++...|.+|..+..++.+|.+.|+..+|.++++
T Consensus 72 s~C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 72 DKCQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp GGCSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 13344444444444432 3344455667778889999999999999777667799999999999999999999999999
Q ss_pred HHHhCCCc
Q 009967 468 EMKEKGMT 475 (521)
Q Consensus 468 ~m~~~g~~ 475 (521)
+..+.|+.
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 99999975
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.79 E-value=0.014 Score=61.28 Aligned_cols=153 Identities=14% Similarity=0.071 Sum_probs=81.4
Q ss_pred HHHhcCCHHHHHH-HHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHH
Q 009967 284 FYAKCGSMEDSLL-VFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYS 362 (521)
Q Consensus 284 ~~~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 362 (521)
.....+++++|.+ ++..+. +......++..+.+.|.++.|.++.+. |. .- .......|+++.|.+
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-~~----f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-------QD-QK----FELALKVGQLTLARD 673 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-HH----HHHHHHHTCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-------cc-hh----eehhhhcCCHHHHHH
Confidence 3345677777766 443332 012225566666677777777655431 11 11 122345677777777
Q ss_pred HHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 009967 363 YFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPED 442 (521)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 442 (521)
+.+.+ .++..|..+...+.+.|+++.|++.|.++. . |..+...+...|+.+...++.+.+...+.
T Consensus 674 ~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~-d-----~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-- 738 (814)
T 3mkq_A 674 LLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH-D-----LESLFLLHSSFNNKEGLVTLAKDAETTGK-- 738 (814)
T ss_dssp HHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-C-----HHHHHHHHHHTTCHHHHHHHHHHHHHTTC--
T ss_pred HHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc-C-----hhhhHHHHHHcCCHHHHHHHHHHHHHcCc--
Confidence 76544 355677777777777777777777777764 1 23333334445555544444443333221
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHH
Q 009967 443 VSSYVMLSNALSVAGKWDNVSNIRRE 468 (521)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (521)
+.....+|.+.|++++|.+++.+
T Consensus 739 ---~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 739 ---FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp ---HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---hHHHHHHHHHcCCHHHHHHHHHH
Confidence 22233334445555555555444
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.62 E-value=0.00046 Score=64.80 Aligned_cols=251 Identities=9% Similarity=0.027 Sum_probs=153.6
Q ss_pred chHHHHHHHhhcCC-Cchh-hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCC
Q 009967 30 ETQKASVQKLETPA-IRTD-SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107 (521)
Q Consensus 30 ~~~~~~~~~~~~g~-~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 107 (521)
++.+..+...+.+. --++ |.++....|.+.+|++.|=+. .|+..|..++....+.|.+++-++.+...++.. -+
T Consensus 40 ~ldRa~eyA~~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke 115 (624)
T 3lvg_A 40 NLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RE 115 (624)
T ss_dssp CSTTTTTSSSSCCCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CS
T ss_pred ccHHHHHHHHHhCCccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cc
Confidence 34555555444330 1122 889999999999998776444 466788899999999999999999988766543 34
Q ss_pred hhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCC----------------
Q 009967 108 EFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHN---------------- 171 (521)
Q Consensus 108 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------- 171 (521)
+..=+.++-+|++.++..+.++++. .||..-...+.+-|...|.++.|.-+|..+..
T Consensus 116 ~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 116 SYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQA 188 (624)
T ss_dssp TTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGS
T ss_pred cccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 4455678899999998877655542 46666667788888888998888888876642
Q ss_pred --------CCchhHHHHHHHHHcCCCHHHHHHHHhhCC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh
Q 009967 172 --------PNVVSYTTMICGLLKRERFEDALKLFQEMP-HRNVVSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST 242 (521)
Q Consensus 172 --------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 242 (521)
.++.+|-.+-.+|...+.+.-|.-.--.+. .+| -...++..|-..|.+++-+.+++.-... -+.....
T Consensus 189 AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGm 265 (624)
T 3lvg_A 189 AVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGM 265 (624)
T ss_dssp STTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHH
T ss_pred HHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHH
Confidence 577899999999998887765543322211 111 0112334455666666666666655421 1234445
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHH-cCCC------CChhHHHHHHHHHHhcCCHHHHH
Q 009967 243 LPCAIIAAANIAALGMGKSFHACAVK-FLGK------LDVFVGNSLISFYAKCGSMEDSL 295 (521)
Q Consensus 243 ~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~------~~~~~~~~l~~~~~~~g~~~~A~ 295 (521)
|+-+.-.|++- .+++..+.++..-. .+++ -....|.-++-.|.+-.+++.|.
T Consensus 266 FTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 266 FTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 55555444443 22222222221111 1111 03445666666666666666554
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.59 E-value=0.0086 Score=47.27 Aligned_cols=65 Identities=8% Similarity=-0.039 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967 407 PGIGFWKALLGGCQIHS---NVELGEFAARRILALD-P-EDVSSYVMLSNALSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 407 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 471 (521)
++..+...+..++++.+ +.++++.++++..+.+ | ++...++.++-+|.+.|++++|+++++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45555555555555554 4445666666665555 4 2455555556666666666666666555543
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.24 Score=40.12 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=24.9
Q ss_pred HHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 009967 285 YAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERM 332 (521)
Q Consensus 285 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 332 (521)
..+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34455555555555544 24445555555555555555555555543
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.50 E-value=0.031 Score=41.28 Aligned_cols=71 Identities=10% Similarity=0.092 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 009967 380 YACMVDLLSRSGRFKEAKEFLYDLP---------FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLS 450 (521)
Q Consensus 380 ~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 450 (521)
...+...+.+.|+++.|...++... ..+....+..|..++.+.|+++.|+..+++++...|+++.+...+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 4445555555555555555554421 0234557888888999999999999999999999999887755554
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.36 E-value=0.026 Score=42.82 Aligned_cols=98 Identities=14% Similarity=-0.013 Sum_probs=59.9
Q ss_pred HHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHH---HHHHHhhCCC-C-C--CHHHHHHHHHHH
Q 009967 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKE---AKEFLYDLPF-D-P--GIGFWKALLGGC 419 (521)
Q Consensus 347 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~-~-~--~~~~~~~l~~~~ 419 (521)
++..-.....+..+.+-|........ ++..+-..+..++.+..+..+ ++.+++++-. . | .....-.|.-++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~~--~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 33444455566666766666543322 666666777777777776655 6666666431 2 2 122444455567
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchHH
Q 009967 420 QIHSNVELGEFAARRILALDPEDVSSY 446 (521)
Q Consensus 420 ~~~g~~~~A~~~~~~~~~~~p~~~~~~ 446 (521)
.+.|++++|.+.++.+++..|++..+.
T Consensus 85 yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 777777777777777777777765543
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.2 Score=40.61 Aligned_cols=129 Identities=9% Similarity=0.012 Sum_probs=90.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCH
Q 009967 314 CGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRF 393 (521)
Q Consensus 314 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 393 (521)
......|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+.. | +..+.-.|.-.|+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-------D---~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH-------S---FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-------C---HHHHHHHHHHHTCH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-------C---HHHHHHHHHHhCCH
Confidence 4456789999999987765 578899999999999999999999998873 2 56677777788888
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967 394 KEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469 (521)
Q Consensus 394 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 469 (521)
+...++-+....+.+ ++.-...+...|++++++++|.+.-+. + .........|-.+.|.++.+++
T Consensus 77 e~L~kla~iA~~~g~---~n~af~~~l~lGdv~~~i~lL~~~~r~----~----eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRED---FGSMLLNTFYNNSTKERSSIFAEGGSL----P----LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHTCHHHHHHHHHHTTCH----H----HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcc---HHHHHHHHHHcCCHHHHHHHHHHCCCh----H----HHHHHHHHcCcHHHHHHHHHHh
Confidence 776665443221222 333444566789999999998765331 1 1111222356778888888775
No 231
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.02 E-value=0.055 Score=38.92 Aligned_cols=68 Identities=10% Similarity=0.021 Sum_probs=51.3
Q ss_pred CChhHHHHHHHHHHhcCC---HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 009967 375 LKPEHYACMVDLLSRSGR---FKEAKEFLYDL-PFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPED 442 (521)
Q Consensus 375 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 442 (521)
.++..+..+..++...++ .++|..++++. ...| ++.....+...+...|++++|+..|+++++.+|++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 566677777777765544 68888888774 2344 46677777888889999999999999999988873
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.98 E-value=0.045 Score=40.37 Aligned_cols=65 Identities=17% Similarity=0.013 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 408 GIGFWKALLGGCQIHSNVELGEFAARRILALD-------PEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 408 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
+......+...+...|+++.|..-|+++++.. +..+.++..++.++.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34455678888999999999999999998842 346778999999999999999999999998754
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.88 E-value=0.31 Score=37.61 Aligned_cols=71 Identities=10% Similarity=-0.025 Sum_probs=36.3
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHhhCC-CCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 009967 374 MLKPEHYACMVDLLSRSGRFK---EAKEFLYDLP-FDP-G-IGFWKALLGGCQIHSNVELGEFAARRILALDPEDVS 444 (521)
Q Consensus 374 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 444 (521)
.|++.+--.+..++.+..+.+ +++.+++++- ..| + ....-.|.-++.+.|++++|.++.+.+++..|+|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 355555555666666655443 3444444421 122 1 223333444566666666666666666666665544
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.71 E-value=0.22 Score=37.71 Aligned_cols=21 Identities=10% Similarity=0.102 Sum_probs=10.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhh
Q 009967 382 CMVDLLSRSGRFKEAKEFLYD 402 (521)
Q Consensus 382 ~l~~~~~~~g~~~~A~~~~~~ 402 (521)
.|.-++.+.|++++|.+.++.
T Consensus 79 ~LAvg~yklg~Y~~A~~~~~~ 99 (126)
T 1nzn_A 79 YLAVGNYRLKEYEKALKYVRG 99 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHH
Confidence 344444555555555555444
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.49 E-value=0.049 Score=42.36 Aligned_cols=108 Identities=12% Similarity=0.027 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHhhccH------HHHHHHHHHchHhCCCCCChh-HHHHHHHH------HHhcCCHHHHHHHHhhCC--
Q 009967 340 NGVTLLGLLWACNHTGLV------EKGYSYFSQAKLEDPGMLKPE-HYACMVDL------LSRSGRFKEAKEFLYDLP-- 404 (521)
Q Consensus 340 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~~-- 404 (521)
|..+|-..+....+.|+. ++.+++|+++...-+ |+.. .+...+.. +...++.++|.++|+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~P--p~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALP--PDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSC--GGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCC--ccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 556777777777777887 788888888764443 4321 12221111 123466667777666541
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 009967 405 FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVML 449 (521)
Q Consensus 405 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 449 (521)
.+.=...|...+..-.++|+.+.|.+++.+++...|.+...+...
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 111155666666666777777777777777777776555444433
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.45 E-value=0.02 Score=50.45 Aligned_cols=85 Identities=18% Similarity=0.148 Sum_probs=50.6
Q ss_pred HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhc-----CCHHHHHHHHhhC-CCCCC--HHHHHHHHHHHHh-cCCHHH
Q 009967 357 VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS-----GRFKEAKEFLYDL-PFDPG--IGFWKALLGGCQI-HSNVEL 427 (521)
Q Consensus 357 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~-~~~~~--~~~~~~l~~~~~~-~g~~~~ 427 (521)
...|...++++.+..+--.+...|..+...|.+. |+.++|.+.|++. .+.|+ ..++..+...++. .|+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 4455556666554443222344566666666663 6777777777662 23442 5556666666655 377777
Q ss_pred HHHHHHHHHhcCCC
Q 009967 428 GEFAARRILALDPE 441 (521)
Q Consensus 428 A~~~~~~~~~~~p~ 441 (521)
+.+.++++++..|.
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 77777777776664
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.41 E-value=0.19 Score=38.29 Aligned_cols=65 Identities=12% Similarity=-0.000 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009967 407 PGIGFWKALLGGCQIHS---NVELGEFAARRILALDPE-DVSSYVMLSNALSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 407 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 471 (521)
|...+-..+++++.+.. +..+++.+++.+...+|. ....+..++-++.+.|++++|+++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444444444444433 334566666666665553 345566666666666666666666666553
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.12 Score=52.73 Aligned_cols=55 Identities=11% Similarity=0.004 Sum_probs=51.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967 416 LGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470 (521)
Q Consensus 416 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 470 (521)
+..|...|+++.|+.+.++++...|.+..+|..|+.+|...|+++.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4457789999999999999999999999999999999999999999999999874
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.57 E-value=0.34 Score=37.71 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=20.8
Q ss_pred ccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 009967 355 GLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYD 402 (521)
Q Consensus 355 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 402 (521)
++.++|.++|+.++..+. .- ..+|-.....-.++|++..|.+++..
T Consensus 74 ~D~d~aR~vy~~a~~~hK-kF-AKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCK-KF-AFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HCGGGCHHHHHHHHHHCT-TB-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhH-HH-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 444555555555542211 11 33444444444455555555555544
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.25 E-value=1.3 Score=46.08 Aligned_cols=13 Identities=0% Similarity=0.181 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhC
Q 009967 460 DNVSNIRREMKEK 472 (521)
Q Consensus 460 ~~A~~~~~~m~~~ 472 (521)
.+|+.++..+...
T Consensus 646 ~~aid~L~~L~~D 658 (963)
T 4ady_A 646 QSAIDVLDPLTKD 658 (963)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHccC
Confidence 5677777777643
No 241
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.84 E-value=5.9 Score=39.55 Aligned_cols=389 Identities=10% Similarity=-0.070 Sum_probs=190.5
Q ss_pred hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHH
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLG 127 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 127 (521)
-+..+.+.+++.....++.. +..+...-.....+....|+..+|....+.+-..| .. ..+.+
T Consensus 78 ~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~----------------~p~~c 139 (618)
T 1qsa_A 78 FVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KS----------------QPNAC 139 (618)
T ss_dssp HHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SC----------------CCTHH
T ss_pred HHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CC----------------CcHHH
Confidence 34455556666666665555 22233333344555566666665655555544333 11 22333
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCC--h
Q 009967 128 KQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRN--V 205 (521)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~ 205 (521)
-.+|....+.|.-.+..++ .-+......|+...|..+...+..........++..+.. ...+........... .
T Consensus 140 ~~l~~~~~~~g~lt~~~~~-~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~~~~~~~~ 215 (618)
T 1qsa_A 140 DKLFSVWRASGKQDPLAYL-ERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTTGATDFTR 215 (618)
T ss_dssp HHHHHHHHHTTCSCHHHHH-HHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHCCCCCHHHHH-HHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhccCCChhhH
Confidence 4445555544422222222 233555567777777777766632211122333333322 223333333322211 1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH----HhhcchHHHHHHHHHHHHcCCCCChhHHHHH
Q 009967 206 VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAA----ANIAALGMGKSFHACAVKFLGKLDVFVGNSL 281 (521)
Q Consensus 206 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 281 (521)
..+...+.-+.+ .+.+.|...+....... ..+......+-... ...+....+...+....... .+.....-.
T Consensus 216 ~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~ 291 (618)
T 1qsa_A 216 QMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERR 291 (618)
T ss_dssp HHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHH
T ss_pred HHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHH
Confidence 122222333333 37888999988886543 23333332222222 22332334444555443332 233334444
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHH
Q 009967 282 ISFYAKCGSMEDSLLVFDKLTERN---IVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVE 358 (521)
Q Consensus 282 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 358 (521)
+....+.|+++.|...|..|.... ....-=+..++...|+.++|..+|+.+... . +|..++.+ .+.|...
T Consensus 292 ~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lAa-~~Lg~~~ 364 (618)
T 1qsa_A 292 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVAA-QRIGEEY 364 (618)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHHH-HHTTCCC
T ss_pred HHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHHH-HHcCCCC
Confidence 555567899999999999998632 222333455677889999999999998742 2 34333322 2222210
Q ss_pred HHHHHHHHchHhCCCCCC-hh-----HHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009967 359 KGYSYFSQAKLEDPGMLK-PE-----HYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIHSNVELGEFAA 432 (521)
Q Consensus 359 ~a~~~~~~~~~~~~~~~~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 432 (521)
. . ......+. .. .-..-+..+.+.|....|...+..+....+......+.......|.++.++...
T Consensus 365 ~-------~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 365 E-------L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp C-------C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred C-------C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 0 0 00011110 00 111234557788999999888776532344444444555556678888777665
Q ss_pred HHHHhcCC---CCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 009967 433 RRILALDP---EDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRV 477 (521)
Q Consensus 433 ~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 477 (521)
.+....+. .-|..|...+.-+.+.-.++.++-.---..+.++.|.
T Consensus 437 ~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 437 IAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK 484 (618)
T ss_dssp HHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred HHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence 44332210 0122344555555555445544433233345555543
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.45 E-value=5.9 Score=41.40 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=24.6
Q ss_pred hHHHHHHHhhcCCCchh---hhhhcccCCChhHHHHHhccCC
Q 009967 31 TQKASVQKLETPAIRTD---SVSCGSESDKFSSVHQVFDEVP 69 (521)
Q Consensus 31 ~~~~~~~~~~~g~~~~~---l~~~~~~~g~~~~A~~~~~~~~ 69 (521)
|+.++....+.. .++ ++++..+.++.+.+.++|.++.
T Consensus 218 Lr~l~~Iy~k~~--~~dy~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 218 LRKSFDFLMNMP--NCDYLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHSS--SCCHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--chhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555444433 233 7788888888888888888753
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.41 E-value=0.25 Score=46.54 Aligned_cols=68 Identities=12% Similarity=0.045 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCccCCc
Q 009967 412 WKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMK-----EKGMTRVPG 479 (521)
Q Consensus 412 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~~~~~ 479 (521)
...++..+...|++++|+..++.+...+|-+...+..++.++.+.|+..+|++.|+++. +.|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34456677888999999999999999999999999999999999999999999998874 358877665
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.54 E-value=6 Score=37.76 Aligned_cols=50 Identities=10% Similarity=-0.114 Sum_probs=30.0
Q ss_pred cchHHHHHHHHHHHHc-----CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 009967 254 AALGMGKSFHACAVKF-----LGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE 303 (521)
Q Consensus 254 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 303 (521)
|+++.|.+.+-.+.+. ...........++..|...|+|+...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6677776665555442 2233455566677777777777776665555443
No 245
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.67 E-value=3.5 Score=31.45 Aligned_cols=139 Identities=12% Similarity=0.050 Sum_probs=77.3
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 009967 215 YSQTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDS 294 (521)
Q Consensus 215 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 294 (521)
+.-.|..++..++..+.... .+..-|+.++=-....-+-+-..++++.+-+ -.|. ..+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHH
Confidence 34567777777777776653 2333444444333333333333333333221 1111 123444444
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCC
Q 009967 295 LLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDP 372 (521)
Q Consensus 295 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 372 (521)
...+-.+.. +....+..+.....+|.-++-.+++.++... .+|+......+..+|.+.|+..++.+++.++- +.|
T Consensus 81 i~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC-~kG 155 (172)
T 1wy6_A 81 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEAC-KKG 155 (172)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTT
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHH-Hhh
Confidence 444443332 3344555667777778777777777775442 46777777777778888888888888777775 555
No 246
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.50 E-value=8.9 Score=35.72 Aligned_cols=55 Identities=15% Similarity=-0.030 Sum_probs=23.4
Q ss_pred HHHHHHhhccHHHHHHHHHHchHhCCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHh
Q 009967 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLK----PEHYACMVDLLSRSGRFKEAKEFLY 401 (521)
Q Consensus 347 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 401 (521)
++..|...|++.+|..++.++.....-..+ ..++..-++.|...|++.++...+.
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~ 163 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALT 163 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 444455555555555554444332211111 1123334444555555555554443
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.45 E-value=12 Score=40.83 Aligned_cols=145 Identities=10% Similarity=0.011 Sum_probs=93.9
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----C----------------
Q 009967 245 CAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTE----R---------------- 304 (521)
Q Consensus 245 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~---------------- 304 (521)
.++..+...+..+.+.++.... +.++..--.+..+|...|++++|.+.|.+... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 4445556666666655544332 22444445567788899999999999988752 0
Q ss_pred ------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--H--HHHHHHHHHHhhccHHHHHHHHHHchHhCCCC
Q 009967 305 ------NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNG--V--TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGM 374 (521)
Q Consensus 305 ------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 374 (521)
-..-|..++..+-+.+.++.+.++-+...+..-.-+. . .|..+.+.+...|++++|...+-.+. ...
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p-d~~-- 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS-TTP-- 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH-HSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC-CHH--
Confidence 0123667778888888888888887776653211121 1 46677788888889998888887664 322
Q ss_pred CChhHHHHHHHHHHhcCCHHHHH
Q 009967 375 LKPEHYACMVDLLSRSGRFKEAK 397 (521)
Q Consensus 375 ~~~~~~~~l~~~~~~~g~~~~A~ 397 (521)
........|+..++..|..+.-.
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhhh
Confidence 34556777777777777655543
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.40 E-value=1.3 Score=31.73 Aligned_cols=63 Identities=13% Similarity=0.074 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHH
Q 009967 322 GEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDL 386 (521)
Q Consensus 322 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (521)
.=+..+-++.+....+.|+.......+++|.+.+++..|.++++-++.+.+. ...+|..+++-
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lqE 88 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHHH
Confidence 3456667777777788899999999999999999999999999998777763 34567766643
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.19 E-value=9.6 Score=35.51 Aligned_cols=287 Identities=11% Similarity=0.013 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhhcCCC--------CCchhHHHHHHHHHcC-CCHHHHHHHHhhCCC---CChhHH---
Q 009967 144 FVGSAILDLYIKLSSIEEATRVFEDTHN--------PNVVSYTTMICGLLKR-ERFEDALKLFQEMPH---RNVVSW--- 208 (521)
Q Consensus 144 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~---~~~~~~--- 208 (521)
.....|...|.+.|+.++..+++..... ........++..+... +..+.-.++..+..+ ..-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888888888888877765 1233445566666553 223333333332221 111222
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh-----HHHHHHHHHhhcchHHHHHHHHHHHHcC--CCCChhHH
Q 009967 209 ---NAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST-----LPCAIIAAANIAALGMGKSFHACAVKFL--GKLDVFVG 278 (521)
Q Consensus 209 ---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-----~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~ 278 (521)
.-++..|...|++.+|.+++..+.+.=-..|..+ +..-+..|...+++..+...+....... +.+++.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2467778888888888888877766311122222 2233344445555555555554443221 11122111
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHH-HcCChHHHHHHHHHHHH----CCCCCC---HHHHHHHHHH
Q 009967 279 NSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYA-QNGRGEEAIEFFERMRI----NGIRPN---GVTLLGLLWA 350 (521)
Q Consensus 279 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~A~~~~~~m~~----~~~~p~---~~~~~~ll~~ 350 (521)
..+ . ..-...+. ..++|..|...|-+..+ .+ .|. ...|..+...
T Consensus 180 a~i-~--------------------------~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL~aL 231 (394)
T 3txn_A 180 GAL-D--------------------------LQSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLLCKI 231 (394)
T ss_dssp HHH-H--------------------------HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHH
T ss_pred HHH-H--------------------------HHhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHHHHH
Confidence 111 0 01111223 34555555555444321 11 011 1123222222
Q ss_pred HHhhccHHHHHHHHH-HchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHH---HHHHHHHHhcCC
Q 009967 351 CNHTGLVEKGYSYFS-QAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP--FDPGIGFW---KALLGGCQIHSN 424 (521)
Q Consensus 351 ~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~---~~l~~~~~~~g~ 424 (521)
. . ++..+...++. ...... ..|....+..++.+| ..+++.+...+++... +..|.... ..+....
T Consensus 232 l-~-~~r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~I----- 302 (394)
T 3txn_A 232 M-L-GQSDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTM----- 302 (394)
T ss_dssp H-T-TCGGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHH-----
T ss_pred H-c-CCHHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH-----
Confidence 1 1 22111112221 111111 235555566666665 5667877777777643 23444321 1111110
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009967 425 VELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGM 474 (521)
Q Consensus 425 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 474 (521)
-...+.++ ..|-....+..++..+.- ..+++...+-+|+..|.
T Consensus 303 ---r~~~L~~i--~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 303 ---LEQNLCRI--IEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp ---HHHHHHHH--HTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHH--hHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 01111112 245566677777777654 67899999999998885
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.01 E-value=1 Score=35.83 Aligned_cols=30 Identities=17% Similarity=0.076 Sum_probs=21.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 009967 376 KPEHYACMVDLLSRSGRFKEAKEFLYDLPF 405 (521)
Q Consensus 376 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 405 (521)
+.+.--.+..+|.+.|++++|+.+++.++.
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 334444577778888888888888887763
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.04 E-value=2.8 Score=33.29 Aligned_cols=121 Identities=11% Similarity=0.049 Sum_probs=59.5
Q ss_pred CCCCCCHH--HHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCCh-------hHHHHHHHHHHhcCCHHHHHHHHhhC--
Q 009967 335 NGIRPNGV--TLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKP-------EHYACMVDLLSRSGRFKEAKEFLYDL-- 403 (521)
Q Consensus 335 ~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-- 403 (521)
.|+.|... ++..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++.+|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34455443 23334455667777777777666654332222331 14455666677777777777766652
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHH
Q 009967 404 -----PFDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREM 469 (521)
Q Consensus 404 -----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 469 (521)
...+.. ...+. . ...... -.. .+.+...-+.++.+|.+.|++++|+.+++.+
T Consensus 92 ~~k~l~k~~s~--~~~~~-~---~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKV--RPSTG-N---SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC---------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCc--ccccc-c---cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 101111 00000 0 000000 000 1224467788999999999999999999864
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.93 E-value=1.1 Score=45.68 Aligned_cols=121 Identities=14% Similarity=0.087 Sum_probs=77.1
Q ss_pred HHHHHHhcCC-hHHHHHHHHHhHHCCCCCChhhH--HHHHHHHcCCCC-hHHHHHHHHHHHHh------CCCCc------
Q 009967 79 IIGRFAKQHH-YEEAIYLFSRMLLLNIRPSEFTF--GSVIPSSTALED-LNLGKQLHAWATKV------GLQSN------ 142 (521)
Q Consensus 79 l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~~~-~~~a~~~~~~~~~~------~~~~~------ 142 (521)
++..+...|+ ++.|+++|+++.+.. |....+ ..++..+...++ --+|.+++.+.++. ..++.
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 3444444556 578999999998864 433332 233433334332 22455555554431 11211
Q ss_pred -----HHHHHHHHHHHHcCCCHHHHHHHhhcCCC--CC-chhHHHHHHHHHcCCCHHHHHHHHhhCC
Q 009967 143 -----VFVGSAILDLYIKLSSIEEATRVFEDTHN--PN-VVSYTTMICGLLKRERFEDALKLFQEMP 201 (521)
Q Consensus 143 -----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 201 (521)
......-.+.+...|+++-|.++-++... |+ -.+|..|..+|...|+++.|+-.+..++
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11233334567778999999999988875 55 5589999999999999999999999886
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.01 E-value=3.2 Score=31.55 Aligned_cols=75 Identities=9% Similarity=-0.059 Sum_probs=51.3
Q ss_pred CCCCChhHHHHHHHHHHhcCCHH---HHHHHHhhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 009967 372 PGMLKPEHYACMVDLLSRSGRFK---EAKEFLYDLP-FDP--GIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSS 445 (521)
Q Consensus 372 ~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 445 (521)
+..|++.+--.+..++.+..+.+ +++.+++++- ..| ....+-.|.-++.+.|++++|.+..+.+++..|+|..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 44466676666777777776553 4555555532 234 23356667777889999999999999999999987665
Q ss_pred H
Q 009967 446 Y 446 (521)
Q Consensus 446 ~ 446 (521)
-
T Consensus 115 ~ 115 (134)
T 3o48_A 115 G 115 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.49 E-value=17 Score=34.55 Aligned_cols=184 Identities=11% Similarity=0.127 Sum_probs=105.9
Q ss_pred CChHHHHHHHHHHHHC-----CCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHH----HHHHhcC
Q 009967 219 GRNEEAVNLFIEMLRE-----GLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLI----SFYAKCG 289 (521)
Q Consensus 219 ~~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g 289 (521)
|+++.|++.+-.+.+. +..........++..|...++++...+.+..+.+..... ......++ .......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 4455555555444431 223334445566666666666666655555444332221 11222222 2222223
Q ss_pred --CHHHHHHHHhhcCC---C-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHH--CCCCCCH---HHHHHHHHHHH
Q 009967 290 --SMEDSLLVFDKLTE---R-------NIVTWNAVICGYAQNGRGEEAIEFFERMRI--NGIRPNG---VTLLGLLWACN 352 (521)
Q Consensus 290 --~~~~A~~~~~~~~~---~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--~~~~p~~---~~~~~ll~~~~ 352 (521)
+.+.-..+.+.+.. . .......|...+...|++.+|..++..+.. .|..+.. ..+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 22333344444332 1 112345678889999999999999999764 3322221 25666777899
Q ss_pred hhccHHHHHHHHHHchH---hCCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHhhC
Q 009967 353 HTGLVEKGYSYFSQAKL---EDPGMLKP--EHYACMVDLLSRSGRFKEAKEFLYDL 403 (521)
Q Consensus 353 ~~~~~~~a~~~~~~~~~---~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 403 (521)
..+++.+|..++.++.. ..+..|+. ..+...+..+...+++.+|-+.|.++
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999998742 12212221 34667788888899999998877654
No 255
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.03 E-value=15 Score=33.20 Aligned_cols=44 Identities=11% Similarity=-0.079 Sum_probs=20.6
Q ss_pred CchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 009967 173 NVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYS 216 (521)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 216 (521)
++.....+...|.+.+++.+|+..|-.-.++++..|..++.-+.
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWY 178 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 34444455555555566666655553222222344444443333
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.82 E-value=15 Score=33.11 Aligned_cols=164 Identities=9% Similarity=0.016 Sum_probs=84.0
Q ss_pred HHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCChhhHHHHHHHHHhhc
Q 009967 179 TMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVNL----FIEMLREGLVPNHSTLPCAIIAAANIA 254 (521)
Q Consensus 179 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~~~~~~ 254 (521)
++..-|.+.+++++|++++-.- ...+.+.|+...|-++ ++.+.+.++++|......++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 3445555566666665554322 2233334444333222 233444455566555555555544333
Q ss_pred c-----hHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHH
Q 009967 255 A-----LGMGKSFHACAVKFL--GKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIE 327 (521)
Q Consensus 255 ~-----~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 327 (521)
. ..-..+...+-.+.| ..-++.....+...|.+.+++.+|+..|-.-.++.+..|..++.-+...+...+
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--- 185 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT--- 185 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG---
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc---
Confidence 2 111222333333333 333778888899999999999999998853222333566555544444332111
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHch
Q 009967 328 FFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK 368 (521)
Q Consensus 328 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 368 (521)
++.+.-..++ -|...++...|..+++...
T Consensus 186 -----------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 186 -----------APLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp -----------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 1222222333 2455677777777665554
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.55 E-value=15 Score=32.82 Aligned_cols=165 Identities=8% Similarity=0.024 Sum_probs=85.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHH----HHHHHHHCCCCCChhhHHHHHHHHHhh
Q 009967 178 TTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGRNEEAVN----LFIEMLREGLVPNHSTLPCAIIAAANI 253 (521)
Q Consensus 178 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~~~~~ll~~~~~~ 253 (521)
.++..-|.+.+++++|++++..- ...+.+.|+...|-+ +.+.+.+.+++++......++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 34445555566666665554332 223344455444333 234444456666666555555554432
Q ss_pred c-----chHHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc---CChH
Q 009967 254 A-----ALGMGKSFHACAVKFLG--KLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQN---GRGE 323 (521)
Q Consensus 254 ~-----~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---~~~~ 323 (521)
. ..+-..+...+..+.|. .-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+... |...
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence 2 11222333333333332 236778888999999999999999887633322455555554433333 3222
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHch
Q 009967 324 EAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAK 368 (521)
Q Consensus 324 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 368 (521)
++ +...-..++ -|...++...|..+++...
T Consensus 186 e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 186 TV--------------AEFFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred hH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 21 111112222 2445678888888877664
No 258
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.48 E-value=3.1 Score=31.52 Aligned_cols=62 Identities=13% Similarity=0.069 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHH
Q 009967 323 EEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDL 386 (521)
Q Consensus 323 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (521)
=+..+-++.+....+.|+.......+++|.+.+|+..|.++|+-++.+.+ +...+|..+++-
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lqE 131 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHHH
Confidence 35566667777778889999999999999999999999999999987776 445567776643
No 259
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.32 E-value=3.5 Score=38.62 Aligned_cols=71 Identities=6% Similarity=-0.081 Sum_probs=53.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHH-----hCCCCcHHHHHHH
Q 009967 78 TIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATK-----VGLQSNVFVGSAI 149 (521)
Q Consensus 78 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 149 (521)
.++..+...|++.+|+..+..+.... +-+...+..+|.++...|+..+|.+.|+...+ .|+.|...+-...
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34556677888888888888887654 55777888888888889999998888887654 4888887765433
No 260
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=86.26 E-value=13 Score=30.77 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=6.5
Q ss_pred cHHHHHHHHHHHHcCCC
Q 009967 142 NVFVGSAILDLYIKLSS 158 (521)
Q Consensus 142 ~~~~~~~l~~~~~~~g~ 158 (521)
+...-...+..+.+.|+
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333333334433333
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.05 E-value=5.6 Score=28.47 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 009967 221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283 (521)
Q Consensus 221 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 283 (521)
.-++.+-++.+...++.|++....+.+++|.+.+++..|.++++-+....-. ...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~-~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-chhhHHHHHH
Confidence 4455666666666677777777777777777777777777777766654322 2345555554
No 262
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=86.04 E-value=14 Score=30.70 Aligned_cols=154 Identities=8% Similarity=-0.001 Sum_probs=64.1
Q ss_pred hHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhC
Q 009967 59 SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVG 138 (521)
Q Consensus 59 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 138 (521)
+....+.+.+..++...-...+..+.+.|..+ +...+..+.. .++...-...+.++...++.+. ...+..+.+
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~-- 91 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK-- 91 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT--
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc--
Confidence 33333444444455444444555555555432 2333333332 2344444444444444443222 222222221
Q ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 009967 139 LQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQT 218 (521)
Q Consensus 139 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (521)
.++..+-...+.++.+.|+.+....+.+.+.+++...-...+.++.+.|+.+....+...+..++..+-...+.++.+.
T Consensus 92 -~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 92 -DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEI 170 (211)
T ss_dssp -CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3444445555555555555433333333333344444444444444444433333333333334444444444444444
Q ss_pred CC
Q 009967 219 GR 220 (521)
Q Consensus 219 ~~ 220 (521)
+.
T Consensus 171 ~~ 172 (211)
T 3ltm_A 171 GG 172 (211)
T ss_dssp CS
T ss_pred Cc
Confidence 43
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=85.99 E-value=11 Score=30.96 Aligned_cols=54 Identities=13% Similarity=0.034 Sum_probs=36.7
Q ss_pred cCCHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 009967 422 HSNVELGEFAARRILA--LDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMT 475 (521)
Q Consensus 422 ~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (521)
.++...+.++|..+.. ++-..+..|...+..+...|++.+|.++|+.-++.+-+
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3446677777777666 44556677777777777777777777777776555443
No 264
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=85.95 E-value=13 Score=30.48 Aligned_cols=17 Identities=6% Similarity=-0.031 Sum_probs=6.8
Q ss_pred CChhHHHHHHHHHHHcC
Q 009967 304 RNIVTWNAVICGYAQNG 320 (521)
Q Consensus 304 ~~~~~~~~li~~~~~~~ 320 (521)
++..+-...+.++...|
T Consensus 150 ~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 150 EDGWVRQSAADALGEIG 166 (201)
T ss_dssp SSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 33333333344444444
No 265
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.04 E-value=37 Score=36.96 Aligned_cols=144 Identities=8% Similarity=-0.058 Sum_probs=69.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhc
Q 009967 311 AVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRS 390 (521)
Q Consensus 311 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 390 (521)
.++..+...+.++.+.++..- .+-+...--.+..++...|++++|.+.|++.. .++..+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa--~~~~~~~~l~---------- 879 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQF---------- 879 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CSCTTCCCSC----------
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh--hhhcccchhh----------
Confidence 344555566666655554332 12233333344455667777777777776652 2221111000
Q ss_pred CCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-Cc----hHHHHHHHHHHhcCChHHHHH
Q 009967 391 GRFKEAKEFLYDLP-FDPGIGFWKALLGGCQIHSNVELGEFAARRILALDPE-DV----SSYVMLSNALSVAGKWDNVSN 464 (521)
Q Consensus 391 g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~----~~~~~l~~~~~~~g~~~~A~~ 464 (521)
........+..... ...-...|..++..+.+.+-++.+.++.+.+++..+. +. ..|..+..++...|++++|..
T Consensus 880 ~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 880 AVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp SSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred hhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 00000011111111 0112334555666666667777777776666664322 22 145566666777777777766
Q ss_pred HHHHHHh
Q 009967 465 IRREMKE 471 (521)
Q Consensus 465 ~~~~m~~ 471 (521)
.+-.+..
T Consensus 960 aL~~~pd 966 (1139)
T 4fhn_B 960 ALMVLST 966 (1139)
T ss_dssp HHHHHHH
T ss_pred HHHhCCC
Confidence 6655443
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.88 E-value=26 Score=31.35 Aligned_cols=165 Identities=10% Similarity=0.076 Sum_probs=98.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHHh
Q 009967 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEF----FERMRINGIRPNGVTLLGLLWACNH 353 (521)
Q Consensus 278 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~~~~p~~~~~~~ll~~~~~ 353 (521)
|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ ++-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 45566667788888888877543 23445666776655554 4555667888888888877777644
Q ss_pred hc--c------HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---
Q 009967 354 TG--L------VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPFDPGIGFWKALLGGCQIH--- 422 (521)
Q Consensus 354 ~~--~------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~--- 422 (521)
.. . ..+|...-.+.- . ...-++.....+...|.+.|++.+|...|-.-. ..+...+..++.-+...
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g-~-~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFS-E-YKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTS-S-CTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCchHHHHHHHHHHHHhhcC-C-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCC
Confidence 22 1 223333322221 1 112377788899999999999999988775221 12344444444443332
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHH-HHHHHHHhcCChHHHHHHHHHHHh
Q 009967 423 SNVELGEFAARRILALDPEDVSSYV-MLSNALSVAGKWDNVSNIRREMKE 471 (521)
Q Consensus 423 g~~~~A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~ 471 (521)
|... ....|. ..+--|.-.|+...|..+++...+
T Consensus 182 ~~~~---------------e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 182 IEDS---------------TVAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CCHH---------------HHHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CCcc---------------hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2222 222222 223345677899999999887654
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.56 E-value=11 Score=26.83 Aligned_cols=85 Identities=13% Similarity=0.012 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009967 256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335 (521)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 335 (521)
.++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+...-||...|..+-. .+.|-.+++...+.++..+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4555555555555443 11112222345678999999999999999899998887754 5778888888888888877
Q ss_pred CCCCCHHHHH
Q 009967 336 GIRPNGVTLL 345 (521)
Q Consensus 336 ~~~p~~~~~~ 345 (521)
| .|....|.
T Consensus 98 g-~p~~q~Fa 106 (115)
T 2uwj_G 98 S-DPALADFA 106 (115)
T ss_dssp S-SHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 6 45444443
No 268
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=82.42 E-value=19 Score=29.48 Aligned_cols=150 Identities=7% Similarity=-0.017 Sum_probs=64.6
Q ss_pred HHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCc
Q 009967 63 QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSN 142 (521)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 142 (521)
.+++.+..+|...-...+..+.+.|.......+. .+.. .++...-...+.++...++.+.. ..+..+.. .++
T Consensus 18 ~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~ 89 (201)
T 3ltj_A 18 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DED 89 (201)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSS
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCC
Confidence 3444444555555555555555555433332232 2222 23444433444444444433222 22222222 345
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCC
Q 009967 143 VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQEMPHRNVVSWNAMIGGYSQTGR 220 (521)
Q Consensus 143 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (521)
..+-...+.++.+.|+.+....+.+.+.+++...-...+.++.+.++.+....+...+..++..+-...+.++.+.|.
T Consensus 90 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 90 GWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 555555555555555544333444444444444444444454444443333333333333444444444444444443
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.84 E-value=12 Score=26.71 Aligned_cols=85 Identities=15% Similarity=0.069 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009967 256 LGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAIEFFERMRIN 335 (521)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 335 (521)
.++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+...-||...|..|-. .+.|-.+++...+.++...
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4555555555555443 11112222345678899999999999999999998887754 4668888888888788777
Q ss_pred CCCCCHHHHH
Q 009967 336 GIRPNGVTLL 345 (521)
Q Consensus 336 ~~~p~~~~~~ 345 (521)
| .|....|.
T Consensus 99 g-~p~~q~Fa 107 (116)
T 2p58_C 99 Q-DPRIQTFV 107 (116)
T ss_dssp C-CHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 6 45444443
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.99 E-value=5 Score=34.85 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=38.2
Q ss_pred HHHhcCCHHHHHHHHhh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 009967 386 LLSRSGRFKEAKEFLYD-LPFDP-GIGFWKALLGGCQIHSNVELGEFAARRILALDPE 441 (521)
Q Consensus 386 ~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 441 (521)
.+.+.|++++|++.+.. ++..| |...-..|+..++-.|++++|.+-++-..+++|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 34567777777766654 43344 4555666677777778888888888888777775
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.92 E-value=13 Score=26.50 Aligned_cols=56 Identities=9% Similarity=0.104 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHH
Q 009967 123 DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTM 180 (521)
Q Consensus 123 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 180 (521)
..++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+...-||...|..|
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~AL 76 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFAL 76 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHH
Confidence 45555555555554432 222222223344455555555555555555555444433
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.46 E-value=13 Score=26.45 Aligned_cols=74 Identities=8% Similarity=-0.014 Sum_probs=35.1
Q ss_pred CChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchhHHHHHHHHHcCCCHHHHHHHHhh
Q 009967 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVSYTTMICGLLKRERFEDALKLFQE 199 (521)
Q Consensus 122 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 199 (521)
...++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+...-||...|..|... +.|-.+++...+..
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~ 94 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNR 94 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 345566666555555432 222222223344555666666666555555555555444322 33444444444433
No 273
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.34 E-value=28 Score=30.17 Aligned_cols=122 Identities=14% Similarity=0.069 Sum_probs=70.5
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCC-CCChhHHHHHHHHHHhcCCH
Q 009967 315 GYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPG-MLKPEHYACMVDLLSRSGRF 393 (521)
Q Consensus 315 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 393 (521)
...+.|++++|++....-++.. +-|...-..++..+|-.|++++|..-++...+..+. .|....|..+|.+-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE------ 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA------ 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH------
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH------
Confidence 4556788888888888777753 345555566777788888888888877776533321 11222344444332
Q ss_pred HHHH-HHHhhC--C--CCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCch
Q 009967 394 KEAK-EFLYDL--P--FDPGIGFWKALLGG--CQIHSNVELGEFAARRILALDPEDVS 444 (521)
Q Consensus 394 ~~A~-~~~~~~--~--~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~ 444 (521)
... ++|..- + ......-...++.+ ....|+.+.|.++-.++.+.-|..+.
T Consensus 79 -~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 79 -QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp -HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred -HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 222 223221 1 12223344445555 34458888888888888877665444
No 274
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=79.76 E-value=19 Score=27.76 Aligned_cols=67 Identities=12% Similarity=0.003 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 406 DPGIGFWKALLGGCQIHS---NVELGEFAARRILALDPE-DVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 406 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
.|...+-..+.+++.+.. +..+++.+++.+...+|. .......++-++.+.|++++|+++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 455555555566655543 344566666666666663 4455666666677777777777666666543
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=77.36 E-value=24 Score=27.59 Aligned_cols=49 Identities=8% Similarity=0.064 Sum_probs=38.0
Q ss_pred HHHHHHHHHh--cCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 009967 428 GEFAARRILA--LDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476 (521)
Q Consensus 428 A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 476 (521)
+.++|..+.. ++-..+..|...+..+...|++.+|.++|+.-++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 6777777776 456677888888888889999999999988876665443
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.78 E-value=6.8 Score=37.20 Aligned_cols=97 Identities=10% Similarity=-0.070 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHHH-
Q 009967 276 FVGNSLISFYAKCGSMEDSLLVFDKLTE------RNIVTWNAVICGYAQNGRGEEAIEFFERMRI---NGIRPNGVTLL- 345 (521)
Q Consensus 276 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~~~~p~~~~~~- 345 (521)
.+...+.+.|.+.|+++.|.+.|.++.+ .-...+-..+..+...+++..+...+++... .+-.|+...-.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3567788888899999999999888864 2234677778888888999999888888654 23223322211
Q ss_pred -HHHHHHHhhccHHHHHHHHHHchHhCC
Q 009967 346 -GLLWACNHTGLVEKGYSYFSQAKLEDP 372 (521)
Q Consensus 346 -~ll~~~~~~~~~~~a~~~~~~~~~~~~ 372 (521)
.-+..+...+++..|...|-.+.....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 111223466788888888888765444
No 277
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.64 E-value=21 Score=27.14 Aligned_cols=61 Identities=13% Similarity=0.073 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 009967 222 EEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283 (521)
Q Consensus 222 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 283 (521)
-+..+-++.+...++.|++......+++|.+.+|+..|..+++-+....-. ...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~-~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC-chhhHHHHHH
Confidence 345555556666667777777777777777777777777777766554322 2445555544
No 278
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=73.37 E-value=5.6 Score=28.47 Aligned_cols=64 Identities=8% Similarity=0.045 Sum_probs=46.6
Q ss_pred hHHHHHHHhhcCCCchh---hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHH
Q 009967 31 TQKASVQKLETPAIRTD---SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIY 94 (521)
Q Consensus 31 ~~~~~~~~~~~g~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 94 (521)
+..+.+.++..|.++.+ -|.........+.|.++++.++.....+|..++.++...|+..-|..
T Consensus 23 ~~~vld~L~~~~vlt~~~~e~I~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 23 VDQLWDVLLSRELFRPHMIEDIQRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CTTTHHHHHHTTSSCHHHHHHHHTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 34577788888866666 34432123578999999999999888999999999987777655543
No 279
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=73.37 E-value=33 Score=27.24 Aligned_cols=49 Identities=6% Similarity=-0.016 Sum_probs=33.3
Q ss_pred HHHHHHHHHh--cCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 009967 428 GEFAARRILA--LDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTR 476 (521)
Q Consensus 428 A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 476 (521)
+.++|..+.. ++-..+..|...+..+...|++.+|.++|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4556666655 455567777777777778888888888887766655443
No 280
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.76 E-value=20 Score=33.98 Aligned_cols=96 Identities=11% Similarity=-0.126 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHchHhCC-CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCCHHHHHH--H
Q 009967 343 TLLGLLWACNHTGLVEKGYSYFSQAKLEDP-GMLKPEHYACMVDLLSRSGRFKEAKEFLYDLP----FDPGIGFWKA--L 415 (521)
Q Consensus 343 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~--l 415 (521)
+...+...|.+.|+++.|.+.+.++..... ...-...+..+++.+...+++..+...+.+.. ..++....+. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 556677777777888888887777764322 22233466677777777777777777776642 1222221111 1
Q ss_pred --HHHHHhcCCHHHHHHHHHHHHhc
Q 009967 416 --LGGCQIHSNVELGEFAARRILAL 438 (521)
Q Consensus 416 --~~~~~~~g~~~~A~~~~~~~~~~ 438 (521)
+..+...+++..|-..|-++...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11234557777777777666544
No 281
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=67.13 E-value=62 Score=28.00 Aligned_cols=49 Identities=8% Similarity=-0.058 Sum_probs=20.8
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCC
Q 009967 70 DLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALE 122 (521)
Q Consensus 70 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 122 (521)
.++...-...+.++.+.|. ..+...+..+.. .++...-...+.++...|
T Consensus 34 ~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRGG-QDAVRLAIEFCS---DKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp CSSHHHHHHHHHHHHHHCC-HHHHHHHHHHHT---CSSHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHccCC-chHHHHHHHHHc---CCCHHHHHHHHHHHHHhc
Confidence 3444333344445555553 334444444443 234443333444444444
No 282
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=66.37 E-value=61 Score=27.81 Aligned_cols=23 Identities=9% Similarity=0.163 Sum_probs=13.9
Q ss_pred hhhhcccCCChhHHHHHhccCCC
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPD 70 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~ 70 (521)
.+...++.|+++....+++....
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g~~ 30 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGGAN 30 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC
Confidence 44455566777777666665443
No 283
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=64.51 E-value=28 Score=29.16 Aligned_cols=43 Identities=7% Similarity=0.124 Sum_probs=21.7
Q ss_pred hhhcccCCChhHHHHHhccCCCC---CcccHHHHHHHHHhcCChHHH
Q 009967 49 VSCGSESDKFSSVHQVFDEVPDL---NVVSATTIIGRFAKQHHYEEA 92 (521)
Q Consensus 49 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A 92 (521)
+...++.|+++....+++....+ +.... +.+...++.|+.+-+
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v 58 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRIDLV 58 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHH
T ss_pred HHHHHHcCChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHHHH
Confidence 34445667777777776654332 22222 233444555665433
No 284
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=61.63 E-value=45 Score=27.21 Aligned_cols=65 Identities=12% Similarity=0.003 Sum_probs=33.4
Q ss_pred HHHHHHHHhhCCCCCCHH--HHHH-----HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC
Q 009967 393 FKEAKEFLYDLPFDPGIG--FWKA-----LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAG 457 (521)
Q Consensus 393 ~~~A~~~~~~~~~~~~~~--~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 457 (521)
++.|+.+|+.+...-+.. .... .+..|...|.+++|.++|++..+.++.+...-..|...-.+.+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd 165 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKD 165 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccC
Confidence 455666666665332311 1122 2334788888888888888877766555544444444433333
No 285
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=60.37 E-value=16 Score=25.73 Aligned_cols=62 Identities=6% Similarity=-0.023 Sum_probs=47.1
Q ss_pred hHHHHHHHhhcCCCchh-hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHH
Q 009967 31 TQKASVQKLETPAIRTD-SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEA 92 (521)
Q Consensus 31 ~~~~~~~~~~~g~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 92 (521)
+..+.+.+...|.++.+ .=..-+.....+.|.++++.++..+..+|..++.++.+.+...-|
T Consensus 24 v~~lld~L~~~~vlt~~~~e~I~~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHcCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 56788888888867766 222222467889999999999988889999999999887764443
No 286
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=58.08 E-value=89 Score=26.72 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=7.2
Q ss_pred HhcCCHHHHHHHHhh
Q 009967 286 AKCGSMEDSLLVFDK 300 (521)
Q Consensus 286 ~~~g~~~~A~~~~~~ 300 (521)
+..|+.+-+..+++.
T Consensus 156 ~~~~~~~~v~~Ll~~ 170 (285)
T 1wdy_A 156 AEKGHVEVLKILLDE 170 (285)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHh
Confidence 344555555544443
No 287
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=57.92 E-value=91 Score=27.73 Aligned_cols=195 Identities=8% Similarity=-0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChh--HHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009967 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIV--TWNAVICGYAQNGR--GEEAIEFFERMRINGIRPNGVTLLGLLWACNH 353 (521)
Q Consensus 278 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 353 (521)
...+++-|...|+.++|...++++..|... ....++..-...++ -+.+-.++..+.. ++-+.......+...+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~ 84 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKD 84 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Q ss_pred hcc--------HHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCC--HHHHHHHH-----------------hhCCCC
Q 009967 354 TGL--------VEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGR--FKEAKEFL-----------------YDLPFD 406 (521)
Q Consensus 354 ~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~-----------------~~~~~~ 406 (521)
..+ ++..-.++.++. ..++-|...............|+ ...|..++ ..++.+
T Consensus 85 ldDl~lD~P~a~~~la~flaraV-~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~e 163 (307)
T 2zu6_B 85 LPELALDTPRAPQLVGQFIARAV-GDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVN 163 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHH-HTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHH
T ss_pred hhHhcccccchHHHHHHHHHHHH-HhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHH
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCh--HHHHHHHHHHHhCCC
Q 009967 407 PGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKW--DNVSNIRREMKEKGM 474 (521)
Q Consensus 407 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~m~~~g~ 474 (521)
.-......++.-|...||.++|.+.++++..-.-.+..+...+..++-+.++. +....++..+.+.|+
T Consensus 164 elkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ 233 (307)
T 2zu6_B 164 HLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSST 233 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCC
No 288
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=56.16 E-value=99 Score=26.66 Aligned_cols=21 Identities=5% Similarity=-0.266 Sum_probs=9.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC
Q 009967 418 GCQIHSNVELGEFAARRILALD 439 (521)
Q Consensus 418 ~~~~~g~~~~A~~~~~~~~~~~ 439 (521)
++...|+ ..+...+.++....
T Consensus 244 aL~~i~~-~~~~~~L~~~l~~~ 264 (280)
T 1oyz_A 244 AAGELGD-KTLLPVLDTMLYKF 264 (280)
T ss_dssp HHHHHCC-GGGHHHHHHHHTTS
T ss_pred HHHhcCc-hhhhHHHHHHHhcC
Confidence 3334444 24445555554433
No 289
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.42 E-value=34 Score=33.00 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHc
Q 009967 343 TLLGLLWACNHTGLVEKGYSYFSQA 367 (521)
Q Consensus 343 ~~~~ll~~~~~~~~~~~a~~~~~~~ 367 (521)
.++.+++.|...+.++.|..+..+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 4455555555556666666666554
No 290
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=53.09 E-value=27 Score=29.95 Aligned_cols=118 Identities=10% Similarity=-0.093 Sum_probs=60.1
Q ss_pred HHHHHhcCChHHHHHHHHHhHHCCCCCChh-------hHHHHHHHHc--CCCChHHHHHHHHHHHHhCC---------C-
Q 009967 80 IGRFAKQHHYEEAIYLFSRMLLLNIRPSEF-------TFGSVIPSST--ALEDLNLGKQLHAWATKVGL---------Q- 140 (521)
Q Consensus 80 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~---------~- 140 (521)
+...++.|+.+....+++.+.+.|..++.. -.+.+..+.. +.|+.+-+..+++.-...+. .
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 334466788888777777776666555432 2233443332 55777766666665433110 0
Q ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchh----------------HHHHHHHHHcCCCHHHHHHHHh
Q 009967 141 SNVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS----------------YTTMICGLLKRERFEDALKLFQ 198 (521)
Q Consensus 141 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------------~~~li~~~~~~g~~~~a~~~~~ 198 (521)
.+..-. +.+...+..|+.+-+..+++.-..++... -.+.+...+..|+.+-+.-+++
T Consensus 89 ~d~~g~-t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 89 VYYRGQ-TALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp SSEESB-CHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccCCC-CHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 000111 22333445677777777766544432211 2233444455666666666665
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=52.49 E-value=86 Score=26.59 Aligned_cols=86 Identities=13% Similarity=0.009 Sum_probs=44.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHH--CCCCC----CHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHH
Q 009967 313 ICGYAQNGRGEEAIEFFERMRI--NGIRP----NGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDL 386 (521)
Q Consensus 313 i~~~~~~~~~~~A~~~~~~m~~--~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (521)
++.+....++++|..++++..+ .++++ +.......+..-.....-.-+..+.+.+. . .+++......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T---CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h---cCCHHHHHHHHHH
Confidence 4555666667777666665443 12221 11122222332223333334444444442 2 3456666667788
Q ss_pred HHhcCCHHHHHHHHhh
Q 009967 387 LSRSGRFKEAKEFLYD 402 (521)
Q Consensus 387 ~~~~g~~~~A~~~~~~ 402 (521)
+.+.|+.++|.++|-+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 8888888888887743
No 292
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=52.02 E-value=99 Score=25.43 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHCCCC
Q 009967 221 NEEAVNLFIEMLREGLV 237 (521)
Q Consensus 221 ~~~a~~~~~~m~~~~~~ 237 (521)
...+..+|..|...|+-
T Consensus 95 ~~~p~~if~~L~~~~IG 111 (202)
T 3esl_A 95 FHESENTFKYMFNKGIG 111 (202)
T ss_dssp HHHHHHHHHHHHHHTSS
T ss_pred cCCHHHHHHHHHHCCCc
Confidence 44556666666655543
No 293
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.43 E-value=69 Score=24.12 Aligned_cols=63 Identities=11% Similarity=0.190 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCh
Q 009967 178 TTMICGLLKRERFEDALKLFQEMPHRN---VVSWNAMIGGYSQTGR--NEEAVNLFIEMLREGLVPNH 240 (521)
Q Consensus 178 ~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~ 240 (521)
..++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+..
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 345556666666666666666665442 1233444444544432 35566777777766654443
No 294
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=49.25 E-value=82 Score=23.69 Aligned_cols=66 Identities=9% Similarity=0.160 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChh---HHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHHH
Q 009967 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIV---TWNAVICGYAQNGR--GEEAIEFFERMRINGIRPNGVT 343 (521)
Q Consensus 278 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~ 343 (521)
...++.-|...|+.++|.+.++++..|... +...+..++-+.++ .+.+..++..+...|+-+....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 355777788888888888888888765322 23333334443322 3567777777777665544443
No 295
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.01 E-value=1.8e+02 Score=30.81 Aligned_cols=104 Identities=9% Similarity=-0.162 Sum_probs=55.6
Q ss_pred HHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---------------------
Q 009967 347 LLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSRSGRFKEAKEFLYDLPF--------------------- 405 (521)
Q Consensus 347 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------- 405 (521)
++..|...|..+-+.++..-+ + .++..--.+..+|...|++++|...|++...
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~----~--~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL----N--SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC----C--SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc----C--CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 444555666666555443222 1 2222223456667777777777777766421
Q ss_pred -CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCch----HHHHHHHHHHhc
Q 009967 406 -DP---GIGFWKALLGGCQIHSNVELGEFAARRILA-LDPEDVS----SYVMLSNALSVA 456 (521)
Q Consensus 406 -~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~----~~~~l~~~~~~~ 456 (521)
++ ....|..++..+...+-++-++++.+.+++ ..++++. .|..+.++.+..
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 00 112456666667777777777777777776 3333333 444444444433
No 296
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.43 E-value=73 Score=24.82 Aligned_cols=66 Identities=9% Similarity=0.160 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChh---HHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHHH
Q 009967 278 GNSLISFYAKCGSMEDSLLVFDKLTERNIV---TWNAVICGYAQNGR--GEEAIEFFERMRINGIRPNGVT 343 (521)
Q Consensus 278 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~ 343 (521)
...++.-|...|+.++|.+.++++..|... +...+..++-+.++ .+.+..++..+...|+-+....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 455777888888899999888888765322 23333334443222 4556777777777665444433
No 297
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=47.68 E-value=1.4e+02 Score=25.88 Aligned_cols=137 Identities=10% Similarity=0.060 Sum_probs=59.4
Q ss_pred CCChhHHHHHhccC--CCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHH
Q 009967 55 SDKFSSVHQVFDEV--PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHA 132 (521)
Q Consensus 55 ~g~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 132 (521)
..+.++..+++..- ..+|..-++.|. ..+..|+.+-+..+++ .|..++...-.+.+...+..|+.+-+..
T Consensus 9 ~~~~~~v~~lL~~~~~~~~d~~g~t~L~-~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~--- 80 (285)
T 3kea_A 9 TWKSKQLKSFLSSKDTFKADVHGHSASY-YAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKI--- 80 (285)
T ss_dssp GCCHHHHHHHHHSTTTTCCCTTSCCHHH-HHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHH---
T ss_pred hcCHHHHHHHHHhCCCCccCCCCCCHHH-HHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHH---
Confidence 34455555555432 123333333333 3345566654444443 3433332222223444455566554433
Q ss_pred HHHHhCCCCcHHH--HHHHHHHHHcCCCHHHHHHHhhcCCC---CCchhHHHHHHHHHcCCCHHHHHHHHhhC
Q 009967 133 WATKVGLQSNVFV--GSAILDLYIKLSSIEEATRVFEDTHN---PNVVSYTTMICGLLKRERFEDALKLFQEM 200 (521)
Q Consensus 133 ~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 200 (521)
+.+.|..++... -.+.+...+..|+.+-+..+++.-.. .+...+.+.+...+..|+.+-+.-+++.-
T Consensus 81 -Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g 152 (285)
T 3kea_A 81 -LLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI 152 (285)
T ss_dssp -HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS
T ss_pred -HHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 334454433211 11223334456676666666655332 22222223344444555555555555443
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=47.02 E-value=79 Score=25.37 Aligned_cols=21 Identities=5% Similarity=0.194 Sum_probs=12.3
Q ss_pred hhhcccCCChhHHHHHhccCC
Q 009967 49 VSCGSESDKFSSVHQVFDEVP 69 (521)
Q Consensus 49 ~~~~~~~g~~~~A~~~~~~~~ 69 (521)
+...+..|+.+....+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTT
T ss_pred HHHHHHhccHHHHHHHHHcCC
Confidence 344455667777766665543
No 299
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=45.32 E-value=1.2e+02 Score=24.31 Aligned_cols=22 Identities=9% Similarity=-0.073 Sum_probs=11.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC
Q 009967 419 CQIHSNVELGEFAARRILALDP 440 (521)
Q Consensus 419 ~~~~g~~~~A~~~~~~~~~~~p 440 (521)
+...|-.++...+|..+.+.+|
T Consensus 218 yf~lg~~d~s~~lf~~lR~kDP 239 (242)
T 3kae_A 218 YFNLGMNDKSKACFELVRRKDP 239 (242)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST
T ss_pred HHhcccchhHHHHHHHHHhcCC
Confidence 4445555555555555555544
No 300
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.20 E-value=1.4e+02 Score=25.26 Aligned_cols=88 Identities=16% Similarity=0.034 Sum_probs=44.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC--CCCC----ChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 009967 210 AMIGGYSQTGRNEEAVNLFIEMLRE--GLVP----NHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLIS 283 (521)
Q Consensus 210 ~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 283 (521)
--+..+....++++|..++++.... ++++ +.......+..-.....-..+..+.+.+ .. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 3466777888888888888776542 2222 1122222333333333333333333333 22 334444555556
Q ss_pred HHHhcCCHHHHHHHHhh
Q 009967 284 FYAKCGSMEDSLLVFDK 300 (521)
Q Consensus 284 ~~~~~g~~~~A~~~~~~ 300 (521)
.+.+.|+.++|.++|-+
T Consensus 100 ~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHH
Confidence 66666666666666544
No 301
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.12 E-value=1e+02 Score=25.82 Aligned_cols=47 Identities=11% Similarity=0.038 Sum_probs=28.3
Q ss_pred HHHHHHHHHHh--cCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009967 427 LGEFAARRILA--LDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKG 473 (521)
Q Consensus 427 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 473 (521)
.+..+|..+.. ++-..+..|..++..+...|++.+|..+|+.-++.+
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44455555554 344456666666666667777777777666654443
No 302
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=45.02 E-value=1.7e+02 Score=26.13 Aligned_cols=59 Identities=10% Similarity=0.105 Sum_probs=41.9
Q ss_pred HhhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009967 400 LYDLPFDPGIG--FWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEK 472 (521)
Q Consensus 400 ~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 472 (521)
|...+..|... +...-+....+.+++..|-.+.+++++++|+.. ..+.|.+++....+.
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 44444455433 566677778999999999999999999998422 235677777766544
No 303
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=44.30 E-value=1.1e+02 Score=23.80 Aligned_cols=50 Identities=8% Similarity=-0.053 Sum_probs=26.5
Q ss_pred HHHHHHHHHHCCCCCChh-hHHHHHHHHHhhcchHHHHHHHHHHHHcCCCC
Q 009967 224 AVNLFIEMLREGLVPNHS-TLPCAIIAAANIAALGMGKSFHACAVKFLGKL 273 (521)
Q Consensus 224 a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 273 (521)
+..+|..|..+|+--... .|......+...|++.+|..++..-++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 666777776666443322 23344444455555555555555555554444
No 304
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=43.64 E-value=97 Score=28.00 Aligned_cols=90 Identities=16% Similarity=0.078 Sum_probs=47.1
Q ss_pred hhhhcccCCChhHHHHHhccCCCC---CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCCh
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPDL---NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDL 124 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 124 (521)
.+...+..|+.+-+..+++....+ |..-++.|. ..+..|+.+-+.-+++ .|..++...-...+...+..|+.
T Consensus 23 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~-~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~ 97 (364)
T 3ljn_A 23 KIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALH-LACKFGCVDTAKYLAS----VGEVHSLWHGQKPIHLAVMANKT 97 (364)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH-HHHHHCCHHHHHHHHH----HCCCCCCBTTBCHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHH-HHHHcCCHHHHHHHHH----CCCCccccCCCCHHHHHHHcCCH
Confidence 566666778888888887764433 333344443 3445566554444433 33333331112233333455777
Q ss_pred HHHHHHHHHHHHhCCCCc
Q 009967 125 NLGKQLHAWATKVGLQSN 142 (521)
Q Consensus 125 ~~a~~~~~~~~~~~~~~~ 142 (521)
+-+..+++.....|..++
T Consensus 98 ~~v~~Ll~~~~~~~~~~~ 115 (364)
T 3ljn_A 98 DLVVALVEGAKERGQMPE 115 (364)
T ss_dssp HHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHhccccCCCHH
Confidence 776666666555454443
No 305
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.87 E-value=61 Score=25.28 Aligned_cols=62 Identities=11% Similarity=0.191 Sum_probs=32.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCC
Q 009967 178 TTMICGLLKRERFEDALKLFQEMPHRN---VVSWNAMIGGYSQTGR--NEEAVNLFIEMLREGLVPN 239 (521)
Q Consensus 178 ~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~ 239 (521)
..++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...++.+.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 345555555566666666666655442 1233344444444322 3456666666666654443
No 306
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=42.25 E-value=1.1e+02 Score=26.66 Aligned_cols=50 Identities=4% Similarity=-0.162 Sum_probs=21.3
Q ss_pred HHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 009967 247 IIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGSMEDSLLVFDK 300 (521)
Q Consensus 247 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 300 (521)
+...+..|+.+.+..+++ .|..++...-.+.+...+..|+.+-+..+++.
T Consensus 35 L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 334444555554444333 33333222112233344455555555555543
No 307
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=38.41 E-value=63 Score=20.39 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=25.7
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCC
Q 009967 431 AARRILALDPEDVSSYVMLSNALSVAGKWDNVSNIRREMKEKGMTRVP 478 (521)
Q Consensus 431 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 478 (521)
..+.+.++.|+ ......-.-.-...|+.+.|+..+-+|...+..|++
T Consensus 12 ~l~~L~emFP~-ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 12 DLKAIQDMFPN-MDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHCSS-SCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 33444455663 222222222223457788888888887776666554
No 308
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=37.62 E-value=1.6e+02 Score=24.18 Aligned_cols=16 Identities=6% Similarity=-0.124 Sum_probs=7.4
Q ss_pred HhhccHHHHHHHHHHc
Q 009967 352 NHTGLVEKGYSYFSQA 367 (521)
Q Consensus 352 ~~~~~~~~a~~~~~~~ 367 (521)
...|+.+.+.++.+.+
T Consensus 218 ~~~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 218 SLNSQVWSALQMSKAL 233 (237)
T ss_dssp CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444444444444
No 309
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=37.48 E-value=1.7e+02 Score=24.05 Aligned_cols=24 Identities=8% Similarity=-0.176 Sum_probs=12.2
Q ss_pred HHhcCChHHHHHHHHHhHHCCCCC
Q 009967 83 FAKQHHYEEAIYLFSRMLLLNIRP 106 (521)
Q Consensus 83 ~~~~g~~~~A~~~~~~m~~~~~~p 106 (521)
.++.|+.+.+..+++.+.+.|..+
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCC
Confidence 344556555555555554444333
No 310
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=36.89 E-value=2.3e+02 Score=26.27 Aligned_cols=112 Identities=15% Similarity=0.154 Sum_probs=52.6
Q ss_pred hhhhcccCCChhHHHHHhccCCCCCc---ccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCh---hhHHHHHHHHcCC
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPDLNV---VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE---FTFGSVIPSSTAL 121 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~ 121 (521)
.+...+..|+++-+..+++....++. ...+ .+...+..|+.+-+.-+++ .|..++. ...+. +...+..
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t-~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~-L~~A~~~ 90 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVET-PLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTP-LHCAARI 90 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCC-HHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCH-HHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCH-HHHHHHC
Confidence 56666677888888777776544432 2222 3344455666655444444 3332221 11122 2222334
Q ss_pred CChHHHHHHHHHHHHhCCCCcHHH--HHHHHHHHHcCCCHHHHHHHhhcC
Q 009967 122 EDLNLGKQLHAWATKVGLQSNVFV--GSAILDLYIKLSSIEEATRVFEDT 169 (521)
Q Consensus 122 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~ 169 (521)
|+.+- .+.+.+.|..++... -...+...+..|+.+-+..+++.-
T Consensus 91 g~~~~----v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 136 (437)
T 1n11_A 91 GHTNM----VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136 (437)
T ss_dssp TCHHH----HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCHHH----HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Confidence 55443 334444454433211 111233344556666666666554
No 311
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=36.63 E-value=1.5e+02 Score=24.52 Aligned_cols=19 Identities=11% Similarity=0.319 Sum_probs=11.7
Q ss_pred hhhhcccCCChhHHHHHhc
Q 009967 48 SVSCGSESDKFSSVHQVFD 66 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~ 66 (521)
.+...++.|+.+-+..+++
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~ 30 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVN 30 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 4555566677666666664
No 312
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.25 E-value=3e+02 Score=26.53 Aligned_cols=61 Identities=13% Similarity=0.024 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-h------HH-HHHHHHHHHcCChHHHHHHHHHHHHC
Q 009967 275 VFVGNSLISFYAKCGSMEDSLLVFDKLTERNI-V------TW-NAVICGYAQNGRGEEAIEFFERMRIN 335 (521)
Q Consensus 275 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~------~~-~~li~~~~~~~~~~~A~~~~~~m~~~ 335 (521)
..++|.+++.|...+.++.|..+..+..-|.. . .| --+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45677778888888888888888888764422 1 12 22345566778888888888776653
No 313
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=35.27 E-value=67 Score=22.80 Aligned_cols=67 Identities=4% Similarity=0.015 Sum_probs=45.4
Q ss_pred HHHHHhhcCCCchh-hhhhcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCC
Q 009967 34 ASVQKLETPAIRTD-SVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN 103 (521)
Q Consensus 34 ~~~~~~~~g~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 103 (521)
+.+.+...|.++.+ .=...+..-..++|.++++.++..+..+|..++.++.. .....+.++.....+
T Consensus 26 lld~L~~~~VLt~~~~e~I~~~~t~~~k~~~Lld~L~~rG~~Af~~F~~aL~~---~~~La~~L~~~~~~~ 93 (100)
T 3crd_A 26 VLQYLYQEGILTENHIQEINAQTTGLRKTMLLLDILPSRGPKAFDTFLDSLQE---FPWVREKLKKAREEA 93 (100)
T ss_dssp SHHHHHHHTSSCHHHHHHHTTCSSSHHHHHHHHHHTTTSCSSCHHHHHHHCTT---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHh---CHHHHHHHHhhcccc
Confidence 44556677766666 22233345677899999999998888999999998864 444455555555444
No 314
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=35.13 E-value=1.9e+02 Score=23.74 Aligned_cols=62 Identities=11% Similarity=0.065 Sum_probs=38.0
Q ss_pred HHHHHHHH---hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcch-----HHHHHHHHHHHHcCC
Q 009967 209 NAMIGGYS---QTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAAL-----GMGKSFHACAVKFLG 271 (521)
Q Consensus 209 ~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~ 271 (521)
-.+|+++. +..+++.|+-++-+|++.| .|....-..++.+.-..|.- ..|...++.....|.
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34455554 5588999999999999998 66555555555555555532 233344444444444
No 315
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=34.58 E-value=18 Score=26.82 Aligned_cols=72 Identities=13% Similarity=0.045 Sum_probs=49.7
Q ss_pred hcccCCChhHHHHHhccCCCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHH
Q 009967 51 CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQL 130 (521)
Q Consensus 51 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 130 (521)
.|.+++++++++++..+ -..|.-.|...+..|+.+-|.++++...+.| +...|.+.+-.|...=+++-++++
T Consensus 15 ~ykkN~rw~qSI~L~Kk-----DkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 15 VPRGSHMWKQSVELAKK-----DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CSSSCCCCSSCCCCCSC-----CCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred hhhccccHHHHHHHHHh-----cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 45566777666544432 2345566777777888888888888888765 667777888888777777766543
No 316
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.94 E-value=4.5e+02 Score=27.80 Aligned_cols=47 Identities=9% Similarity=-0.184 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhc
Q 009967 242 TLPCAIIAAANIAALGMGKSFHACAVKFLGKLDV----FVGNSLISFYAKC 288 (521)
Q Consensus 242 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 288 (521)
-|..++..+-+.+.++.+..+-+.+++.-..-|. ..+..+.++.+..
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 4556666666667777666666666654322222 2455555555543
No 317
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=33.17 E-value=1.2e+02 Score=25.86 Aligned_cols=62 Identities=13% Similarity=-0.015 Sum_probs=31.3
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCC-------ChhhHHHHHHHHc--CCCChHHHHHHHHHH
Q 009967 72 NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRP-------SEFTFGSVIPSST--ALEDLNLGKQLHAWA 134 (521)
Q Consensus 72 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~ 134 (521)
|..-.+.|.. .++.|+.+.+..+++...+.+... +..-.+.|..++. +.|+.+-+..+++.-
T Consensus 10 d~~g~t~L~~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 10 RLYDRRSIFD-AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp -CCCHHHHHH-HHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred CcccchHHHH-HHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 3334444444 355677777777777665544322 2233344444432 346666665555543
No 318
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=32.43 E-value=1.7e+02 Score=28.19 Aligned_cols=43 Identities=19% Similarity=0.088 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHHH
Q 009967 423 SNVELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSNI 465 (521)
Q Consensus 423 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 465 (521)
..++.|...|.++..+.|++...|+.|+-.....|+.-+|.-.
T Consensus 166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~ 208 (497)
T 1ya0_A 166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFY 208 (497)
T ss_dssp TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHH
Confidence 3445555555555555555555555555555555554444433
No 319
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=31.54 E-value=70 Score=22.31 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 009967 445 SYVMLSNALSVAGKWDNVSNIRRE 468 (521)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~ 468 (521)
.+...+..+.+.|+|++|++..++
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHH
Confidence 344555666666666666655544
No 320
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.63 E-value=1.2e+02 Score=25.08 Aligned_cols=55 Identities=11% Similarity=0.172 Sum_probs=32.8
Q ss_pred hhhhcccCCChhHHHHHhccCCCCCcc----cHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCC
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPDLNVV----SATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPS 107 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 107 (521)
.+...++.|+++-+..+++.....+.. .++. +...+..|+.+- ++.+.+.|..++
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~-L~~A~~~~~~~~----v~~Ll~~g~~~~ 103 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP-LHWATRQGHLSM----VVQLMKYGADPS 103 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCH-HHHHHHHTCHHH----HHHHHHTTCCTT
T ss_pred HHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCCh-hHHHHHcCCHHH----HHHHHHcCCCCc
Confidence 778888899999998888876543221 2333 344455566543 344444554443
No 321
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.53 E-value=2e+02 Score=23.50 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=31.7
Q ss_pred HHHHHHHHH---hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhc
Q 009967 208 WNAMIGGYS---QTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIA 254 (521)
Q Consensus 208 ~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 254 (521)
+-.+|+++. +..+++.|+-++-+|++.|-.|....-..++.+.-..|
T Consensus 7 HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 7 FYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 334555554 45889999999999999987775555455555554444
No 322
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=30.05 E-value=2.1e+02 Score=23.54 Aligned_cols=111 Identities=5% Similarity=-0.079 Sum_probs=48.1
Q ss_pred HHcCCCHHHHHHHhhcCCCCCch--hHHHHHHHHHcCCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCChHHHHHH
Q 009967 153 YIKLSSIEEATRVFEDTHNPNVV--SYTTMICGLLKRERFEDALKLFQEMPHRN---VVSWNAMIGGYSQTGRNEEAVNL 227 (521)
Q Consensus 153 ~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~ 227 (521)
.+..|+.+-+..+++.-..++.. .-.+.+...++.|+.+-+.-+++.-..++ ..-. +.+...++.|+.+-+
T Consensus 118 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v--- 193 (237)
T 3b7b_A 118 ATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD-SPLHIAARENRYDCV--- 193 (237)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCC-CHHHHHHHTTCHHHH---
T ss_pred HHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHhCCHhHH---
Confidence 34456666555555543332111 01112233344456555555554433221 1111 122333445554433
Q ss_pred HHHHHHCCCCCChhh--HHHHHHHHHhhcchHHHHHHHHHHHH
Q 009967 228 FIEMLREGLVPNHST--LPCAIIAAANIAALGMGKSFHACAVK 268 (521)
Q Consensus 228 ~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~ 268 (521)
+.+.+.|..++... -.+.+......|+...+.++.+.+.+
T Consensus 194 -~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 194 -VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp -HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444454443211 12334445566666667766666654
No 323
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.93 E-value=83 Score=24.17 Aligned_cols=62 Identities=5% Similarity=-0.091 Sum_probs=37.2
Q ss_pred HHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCH
Q 009967 97 SRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI 159 (521)
Q Consensus 97 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 159 (521)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 345556666554433 23334444455667778888877766555666666666777777654
No 324
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=29.75 E-value=1.1e+02 Score=25.78 Aligned_cols=118 Identities=8% Similarity=-0.066 Sum_probs=58.9
Q ss_pred HHHHHhcCChHHHHHHHHHhHHCCCCCCh-------hhHHHHHHHHcC--CCChHHHHHHHHHHHHhCCCC---------
Q 009967 80 IGRFAKQHHYEEAIYLFSRMLLLNIRPSE-------FTFGSVIPSSTA--LEDLNLGKQLHAWATKVGLQS--------- 141 (521)
Q Consensus 80 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~--------- 141 (521)
+...++.|+.+....+++.+.+.|..++. .-.+.+..++.. .|+.+-+..+++.-...+...
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 85 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD 85 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccc
Confidence 34456677777777777776666654433 223334333322 366666666665544322110
Q ss_pred -cHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCchh---------------HHHHHHHHHcCCCHHHHHHHHh
Q 009967 142 -NVFVGSAILDLYIKLSSIEEATRVFEDTHNPNVVS---------------YTTMICGLLKRERFEDALKLFQ 198 (521)
Q Consensus 142 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------------~~~li~~~~~~g~~~~a~~~~~ 198 (521)
|..-. +.+...+..|+.+-+..+++.-..++... -.+.+...+..|+.+-+.-+++
T Consensus 86 ~d~~g~-t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 86 EFYQGH-SALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp TTTTTC-CHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccCC-CHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 11112 22334446677777777776644322111 1223344445666666666665
No 325
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=29.45 E-value=2.1e+02 Score=22.64 Aligned_cols=14 Identities=14% Similarity=0.480 Sum_probs=6.3
Q ss_pred hcCCHHHHHHHHhh
Q 009967 287 KCGSMEDSLLVFDK 300 (521)
Q Consensus 287 ~~g~~~~A~~~~~~ 300 (521)
..|+.+-+..+++.
T Consensus 115 ~~~~~~~v~~Ll~~ 128 (201)
T 3hra_A 115 EKGHIDNVKLLLED 128 (201)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHc
Confidence 34444444444443
No 326
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=29.32 E-value=87 Score=23.49 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=15.5
Q ss_pred CChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCC
Q 009967 122 EDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLS 157 (521)
Q Consensus 122 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 157 (521)
+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 24 ~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 24 DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 334444444444444433333333333444444444
No 327
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.11 E-value=1.3e+02 Score=20.05 Aligned_cols=62 Identities=5% Similarity=0.004 Sum_probs=40.1
Q ss_pred HHhHHCCCCCChhhHHHHHHHHcCCC-ChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCH
Q 009967 97 SRMLLLNIRPSEFTFGSVIPSSTALE-DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI 159 (521)
Q Consensus 97 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 159 (521)
+.|.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+...|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34556777666544 34555655554 5667888888887776556666666677777766643
No 328
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=28.30 E-value=3.9e+02 Score=25.36 Aligned_cols=114 Identities=9% Similarity=-0.048 Sum_probs=84.7
Q ss_pred CCChhHHHHHhccCCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHH
Q 009967 55 SDKFSSVHQVFDEVPDLNV-VSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAW 133 (521)
Q Consensus 55 ~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 133 (521)
..+.+-|.++..+..-|.. ..|..-...+...|++++|.++-..-. .|+--+..|.+.+-.+=...|...-...+|..
T Consensus 342 l~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP-~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~ 420 (494)
T 1bpo_A 342 LQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAP-KGILRTPDTIRRFQSVPAQPGQTSPLLQYFGI 420 (494)
T ss_dssp TCCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG-GGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHH
T ss_pred cCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc-cccccCHHHHHHHhcCCCCCCCCCHHHHHHHH
Confidence 4677888888877665543 246666778889999999998877655 35667788887777766677888889999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 009967 134 ATKVGLQSNVFVGSAILDLYIKLSSIEEATRVFEDTH 170 (521)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 170 (521)
+.+.| ..+..----+++.-..+|+.+-.++.+.+-.
T Consensus 421 Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e~K 456 (494)
T 1bpo_A 421 LLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKEDK 456 (494)
T ss_dssp HHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC
T ss_pred HhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhcCC
Confidence 99988 5565555567777777888888877776544
No 329
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=28.18 E-value=2.5e+02 Score=23.16 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=33.8
Q ss_pred hHHHHHHHHHH---hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhhcc
Q 009967 206 VSWNAMIGGYS---QTGRNEEAVNLFIEMLREGLVPNHSTLPCAIIAAANIAA 255 (521)
Q Consensus 206 ~~~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 255 (521)
..+-.+|+++. +..+++.|+-++-+|++.|-.|....-..++.+.-..|.
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGl 85 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGL 85 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 33444556654 458899999999999999877765555555555555553
No 330
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=27.17 E-value=3.7e+02 Score=24.74 Aligned_cols=292 Identities=10% Similarity=0.013 Sum_probs=138.8
Q ss_pred hhhhcccCCChhHHHHHhccCCCC---CcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCh---hhHHHHHHHHcCC
Q 009967 48 SVSCGSESDKFSSVHQVFDEVPDL---NVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE---FTFGSVIPSSTAL 121 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~ 121 (521)
.+...++.|+.+-+..+++..... +...++.| ...++.|+.+-+.-+++ .|..|+. ...+.+ ...+..
T Consensus 50 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~t~L-~~A~~~ 123 (437)
T 1n11_A 50 PLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPL-HCAARIGHTNMVKLLLE----NNANPNLATTAGHTPL-HIAARE 123 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHH-HHHHHHTCHHHHHHHHH----HTCCTTCCCTTCCCHH-HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHH-HHHHHCCCHHHHHHHHh----CCCCCCCCCCCCCcHH-HHHHHc
Confidence 677777889888888888765433 22333333 34456677654444433 3433332 222222 233445
Q ss_pred CChHHHHHHHHHHHHhCCCCc---HHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCch--hHHHHHHHHHcCCCHHHHHHH
Q 009967 122 EDLNLGKQLHAWATKVGLQSN---VFVGSAILDLYIKLSSIEEATRVFEDTHNPNVV--SYTTMICGLLKRERFEDALKL 196 (521)
Q Consensus 122 ~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~ 196 (521)
|+.+.+..++ +.+..++ ..-. ..+...+..|+.+-+..+++.-..++.. .-.+.+...+..|+.+-+.-+
T Consensus 124 g~~~~v~~Ll----~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 198 (437)
T 1n11_A 124 GHVETVLALL----EKEASQACMTKKGF-TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198 (437)
T ss_dssp TCHHHHHHHH----HTTCCSCCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHH----hCCCCCcCCCCCCC-CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 6665554444 3343221 1111 2344455778888877777765443221 111234455667777766666
Q ss_pred HhhCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhhcchHHHHHHHHHHHHcCC
Q 009967 197 FQEMPHRNV---VSWNAMIGGYSQTGRNEEAVNLFIEMLREGLVPNHST--LPCAIIAAANIAALGMGKSFHACAVKFLG 271 (521)
Q Consensus 197 ~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 271 (521)
++.-..++. .-++. +...+..|+.+-+. .+.+.|..++... -.+.+...+..|+.+.+..+ .+.+.
T Consensus 199 l~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~~~ 269 (437)
T 1n11_A 199 LPRGGSPHSPAWNGYTP-LHIAAKQNQVEVAR----SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL----LSKQA 269 (437)
T ss_dssp GGGTCCSCCCCTTCCCH-HHHHHHTTCHHHHH----HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH----HTTTC
T ss_pred HhCCCCCCCcCCCCCCH-HHHHHHcCCHHHHH----HHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH----HhcCC
Confidence 665443221 11222 33445566655443 3444443333211 11233444556666544443 44444
Q ss_pred CCChhH--HHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---H
Q 009967 272 KLDVFV--GNSLISFYAKCGSMEDSLLVFDKLTER---NIVTWNAVICGYAQNGRGEEAIEFFERMRINGIRPNGV---T 343 (521)
Q Consensus 272 ~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~ 343 (521)
.++... -.+.+...++.|+.+-+.-+++.-... +..-.+. +...+..|+.+-+.-+ .+.|..++.. .
T Consensus 270 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~L----l~~gad~n~~~~~g 344 (437)
T 1n11_A 270 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTP-LHVASHYGNIKLVKFL----LQHQADVNAKTKLG 344 (437)
T ss_dssp CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCH-HHHHHHSSCSHHHHHH----HHTTCCTTCCCTTS
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCH-HHHHHHcCcHHHHHHH----HhcCCCCCCCCCCC
Confidence 332211 112334445667777777666654332 2222222 3334556776544433 4445444332 2
Q ss_pred HHHHHHHHHhhccHHHHHHHHH
Q 009967 344 LLGLLWACNHTGLVEKGYSYFS 365 (521)
Q Consensus 344 ~~~ll~~~~~~~~~~~a~~~~~ 365 (521)
.+.| ...+..|..+-+.-+++
T Consensus 345 ~t~L-~~A~~~g~~~iv~~Ll~ 365 (437)
T 1n11_A 345 YSPL-HQAAQQGHTDIVTLLLK 365 (437)
T ss_dssp CCHH-HHHHHTTCHHHHHHHHH
T ss_pred CCHH-HHHHHCChHHHHHHHHH
Confidence 2233 33345666665554443
No 331
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=26.93 E-value=2.3e+02 Score=22.31 Aligned_cols=50 Identities=2% Similarity=-0.016 Sum_probs=24.2
Q ss_pred HHHHHHHHHHCCCCCChh-hHHHHHHHHHhhcchHHHHHHHHHHHHcCCCC
Q 009967 224 AVNLFIEMLREGLVPNHS-TLPCAIIAAANIAALGMGKSFHACAVKFLGKL 273 (521)
Q Consensus 224 a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 273 (521)
+..+|..|..+|+--... .|......+-..|++..|..++...++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 445566666665433322 23333444444455555555555555554444
No 332
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.26 E-value=1.8e+02 Score=22.75 Aligned_cols=70 Identities=9% Similarity=0.063 Sum_probs=48.4
Q ss_pred hHHHHHHHHH-hHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHHcCCCH
Q 009967 89 YEEAIYLFSR-MLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKV--GLQSNVFVGSAILDLYIKLSSI 159 (521)
Q Consensus 89 ~~~A~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 159 (521)
.+.+++-+++ +.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3455555544 445677776543 45566677777888999999999887 6666766666667888887754
No 333
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.21 E-value=2.2e+02 Score=21.87 Aligned_cols=63 Identities=6% Similarity=0.018 Sum_probs=43.8
Q ss_pred HHhHHCCCCCChhhHHHHHHHHcCCC-ChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHH
Q 009967 97 SRMLLLNIRPSEFTFGSVIPSSTALE-DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 160 (521)
Q Consensus 97 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 160 (521)
+.|.+.|+.++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 446667777665543 3455555555 67789999999988876667777666778888877543
No 334
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.16 E-value=1.9e+02 Score=22.08 Aligned_cols=59 Identities=8% Similarity=0.020 Sum_probs=32.9
Q ss_pred HHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 009967 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290 (521)
Q Consensus 231 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 290 (521)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.++..+..|...-++.+...|-
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 4455555544332 3334444444555666677776666666666666666666666553
No 335
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=24.68 E-value=2.3e+02 Score=25.35 Aligned_cols=81 Identities=9% Similarity=-0.137 Sum_probs=37.4
Q ss_pred HHHhcCCHHHHHHHHhhCCC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 009967 386 LLSRSGRFKEAKEFLYDLPF-------DPGIGFWKALLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458 (521)
Q Consensus 386 ~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 458 (521)
..+..|+.+-+..+++.-.. ..+...++.|. ..+..|+.+-+.-+++.....+..+..-...|. ...+.|+
T Consensus 179 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~-~A~~~g~ 256 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILINWEDVAMRFVEMGIDVNMEDNEHTVPLY-LSVRAAM 256 (364)
T ss_dssp HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH-HHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHH-HHHHTCC
T ss_pred HHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH-HHHHhCh
Confidence 34466777777777664220 11222222222 234566766555555543332222222222222 2345577
Q ss_pred hHHHHHHHHH
Q 009967 459 WDNVSNIRRE 468 (521)
Q Consensus 459 ~~~A~~~~~~ 468 (521)
.+-+..+++.
T Consensus 257 ~~~v~~Ll~~ 266 (364)
T 3ljn_A 257 VLLTKELLQK 266 (364)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 6666666654
No 336
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.09 E-value=1.1e+02 Score=21.49 Aligned_cols=38 Identities=13% Similarity=0.089 Sum_probs=27.8
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHH
Q 009967 289 GSMEDSLLVFDKLTERNIVTWNAVICGYAQNGRGEEAI 326 (521)
Q Consensus 289 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 326 (521)
...+.|.++++.+.+..+.+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46778888888888877788888888886656654443
No 337
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=24.03 E-value=3.1e+02 Score=22.77 Aligned_cols=47 Identities=15% Similarity=0.066 Sum_probs=26.5
Q ss_pred HHHHHHHHHHchHhCCCCCChh-HH-----HHHHHHHHhcCCHHHHHHHHhhC
Q 009967 357 VEKGYSYFSQAKLEDPGMLKPE-HY-----ACMVDLLSRSGRFKEAKEFLYDL 403 (521)
Q Consensus 357 ~~~a~~~~~~~~~~~~~~~~~~-~~-----~~l~~~~~~~g~~~~A~~~~~~~ 403 (521)
++.|..+|+.+.....+..+.. .. -..+-.|.+.|.+++|.+++++.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 5677777877765543221110 11 12344566777777777777764
No 338
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=23.57 E-value=3.1e+02 Score=24.92 Aligned_cols=43 Identities=9% Similarity=0.081 Sum_probs=29.5
Q ss_pred HHHHHHHHHhc-----CCCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009967 428 GEFAARRILAL-----DPEDVSSYVMLSNALSVAGKWDNVSNIRREMK 470 (521)
Q Consensus 428 A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 470 (521)
++.+|.+++.. +-.+..-|..++..+.|.+++.+|++.|-+..
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 44455555441 22366678888888888889888888887754
No 339
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=23.33 E-value=2.6e+02 Score=23.99 Aligned_cols=112 Identities=11% Similarity=-0.114 Sum_probs=37.8
Q ss_pred hhhhcccCCChhHHHHHhccC--------------CCCCcccHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCh---hh
Q 009967 48 SVSCGSESDKFSSVHQVFDEV--------------PDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSE---FT 110 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~ 110 (521)
.++..+..|+.++..++.... ...+..-++.|. ..+..|+.+-+.. +.+.|..++. .-
T Consensus 18 ~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~-~Aa~~g~~~~v~~----Ll~~g~~~~~~~~~g 92 (285)
T 3d9h_A 18 GSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMH-EAAIHGHQLSLRN----LISQGWAVNIITADH 92 (285)
T ss_dssp ------------------------CCSEECCCCTTCSSSCCSCCHHH-HHHHTTCHHHHHH----HHHTTCCSCEECTTC
T ss_pred HHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHH-HHHHcCCHHHHHH----HHHCCCCCCCcCCCC
Confidence 667777777777776643321 122333444443 3455666544433 3444544432 22
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHH---HHHHHHHHHHcCCCHHHHHHHhhcCC
Q 009967 111 FGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVF---VGSAILDLYIKLSSIEEATRVFEDTH 170 (521)
Q Consensus 111 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~ 170 (521)
.+.+.. .+..|+.+-+ +.+.+.|..++.. -.+ .+...+..|+.+-+..+++.-.
T Consensus 93 ~t~L~~-A~~~g~~~~v----~~Ll~~ga~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~ 149 (285)
T 3d9h_A 93 VSPLHE-ACLGGHLSCV----KILLKHGAQVNGVTADWHT-PLFNACVSGSWDCVNLLLQHGA 149 (285)
T ss_dssp CCHHHH-HHHTTCHHHH----HHHHHTTCCSSCCCTTCCC-HHHHHHHHTCHHHHHHHHHTTC
T ss_pred CCHHHH-HHHCCcHHHH----HHHHHCCCCCCCCCCCCCC-HHHHHHHcCHHHHHHHHHHCCC
Confidence 222332 2344554433 3344445443321 111 2223334566666655555443
No 340
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.63 E-value=48 Score=20.36 Aligned_cols=43 Identities=0% Similarity=-0.020 Sum_probs=29.4
Q ss_pred cchHHHHHHHhhcCCCchh-hhhhcccCCC--hhHHHHHhccCCCCC
Q 009967 29 IETQKASVQKLETPAIRTD-SVSCGSESDK--FSSVHQVFDEVPDLN 72 (521)
Q Consensus 29 ~~~~~~~~~~~~~g~~~~~-l~~~~~~~g~--~~~A~~~~~~~~~~~ 72 (521)
...++....+++.| |... .-.++.+.|+ ++.|++.+.+|.-|+
T Consensus 7 ~vn~qmlq~L~eMG-Fd~erae~Alk~Tg~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 7 GVNRQMLQELVNAG-CDQEMAGRALKQTGSRSIEAALEYISKMSGPS 52 (54)
T ss_dssp SCCHHHHHHHHHHH-CCHHHHHHHHHHHTSCCHHHHHHHHHHHSCSC
T ss_pred hhHHHHHHHHHHcC-CCHHHHHHHHHHhCcccHHHHHHHHHHhcCCC
Confidence 44556677778888 7777 5555556665 888888887776554
No 341
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.49 E-value=1.2e+02 Score=23.43 Aligned_cols=63 Identities=10% Similarity=-0.038 Sum_probs=40.0
Q ss_pred HHhHHCCCCCChhhHHHHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCHH
Q 009967 97 SRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 160 (521)
Q Consensus 97 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 160 (521)
+.+.+.|+.++..-. .++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 16 ~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 345566766554432 344445555667788888888888776667766666777887777543
No 342
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.35 E-value=3.1e+02 Score=22.20 Aligned_cols=20 Identities=10% Similarity=0.024 Sum_probs=11.5
Q ss_pred hhhhcccCCChhHHHHHhcc
Q 009967 48 SVSCGSESDKFSSVHQVFDE 67 (521)
Q Consensus 48 l~~~~~~~g~~~~A~~~~~~ 67 (521)
.+...++.|+++....+++.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHh
Confidence 44445556666666666654
No 343
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.30 E-value=82 Score=24.01 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=28.2
Q ss_pred HHHHHHcCCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCH
Q 009967 113 SVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI 159 (521)
Q Consensus 113 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 159 (521)
.++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34445555555666777777776665555555555556666666654
No 344
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=21.90 E-value=1.1e+02 Score=19.30 Aligned_cols=30 Identities=30% Similarity=0.290 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 009967 221 NEEAVNLFIEMLREGLVPNHSTLPCAIIAA 250 (521)
Q Consensus 221 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 250 (521)
.++|.+.|.+|++..-.++..||...++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 357777787777654445556666666665
No 345
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.05 E-value=3.8e+02 Score=24.06 Aligned_cols=147 Identities=16% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHchHhCCCCCChhHHHHHHHHHHh
Q 009967 310 NAVICGYAQNGRGEEAIEFFERMRINGIRPNGVTLLGLLWACNHTGLVEKGYSYFSQAKLEDPGMLKPEHYACMVDLLSR 389 (521)
Q Consensus 310 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (521)
..++.-|...|+.++|...++++......|...........-.+....+.+..++..+. ..++-+.......
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~-~~~~is~~~~~~G------- 86 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLL-CAGHLSTAQYYQG------- 86 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HTTSSCHHHHHHH-------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-HCCCCCHHHHHHH-------
Q ss_pred cCCHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCChHHHHH
Q 009967 390 SGRFKEAKEFLYDLPF-DPGIGFWKALLGGCQIHSNV----ELGEFAARRILALDPEDVSSYVMLSNALSVAGKWDNVSN 464 (521)
Q Consensus 390 ~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 464 (521)
+.+..+.+.++.. -|....+-.-+-+.+..... +-...+.+.+...+. .......+...+.+....+.+..
T Consensus 87 ---f~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~-~~~fl~~vl~~l~~~~g~~~l~~ 162 (339)
T 1ug3_A 87 ---LYEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGK-AASLLLEILGLLCKSMGPKKVGT 162 (339)
T ss_dssp ---HHHHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTC-HHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ---HHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHcCHHHHHH
Q ss_pred HHHH
Q 009967 465 IRRE 468 (521)
Q Consensus 465 ~~~~ 468 (521)
+|++
T Consensus 163 ~~~~ 166 (339)
T 1ug3_A 163 LWRE 166 (339)
T ss_dssp HHHH
T ss_pred HHHH
No 346
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.94 E-value=2.9e+02 Score=21.20 Aligned_cols=59 Identities=7% Similarity=-0.021 Sum_probs=30.8
Q ss_pred HHHCCCCCChhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 009967 231 MLREGLVPNHSTLPCAIIAAANIAALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCGS 290 (521)
Q Consensus 231 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 290 (521)
+.+.|++++..- ..++..+...+..-.|.++++.+.+.++..+..|...-++.+...|-
T Consensus 18 l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 444555443332 23344444444455666666666666665566665556666666553
No 347
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.69 E-value=1.9e+02 Score=19.12 Aligned_cols=58 Identities=5% Similarity=0.031 Sum_probs=31.4
Q ss_pred HHHCCCCCChhhHHHHHHHHHhhc-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 009967 231 MLREGLVPNHSTLPCAIIAAANIA-ALGMGKSFHACAVKFLGKLDVFVGNSLISFYAKCG 289 (521)
Q Consensus 231 m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 289 (521)
+.+.|+..+..- ..++..+...+ ..-.+.++.+.+.+.++..+..+....++.+.+.|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 445565555433 33444444443 44456666666666655555555555555555544
No 348
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.63 E-value=3.3e+02 Score=22.29 Aligned_cols=45 Identities=13% Similarity=0.202 Sum_probs=29.7
Q ss_pred hhHHHHHhccCCCC-Ccc-------cHHHHHHHHHhcCChHHHHHHHHHhHHC
Q 009967 58 FSSVHQVFDEVPDL-NVV-------SATTIIGRFAKQHHYEEAIYLFSRMLLL 102 (521)
Q Consensus 58 ~~~A~~~~~~~~~~-~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 102 (521)
.+.|+-+|+.+.+- +.. .--..+..|.++|.+++|.++|++....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 47888888887742 211 1123445788899999999999986543
No 349
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=20.19 E-value=2.5e+02 Score=28.15 Aligned_cols=44 Identities=11% Similarity=0.128 Sum_probs=35.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCC
Q 009967 415 LLGGCQIHSNVELGEFAARRILALDPEDVSSYVMLSNALSVAGK 458 (521)
Q Consensus 415 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 458 (521)
........|++..|.++.+.++..+|+|..+-...+.+|.+.|.
T Consensus 455 ~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 455 QARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 34445678999999999999999999998888888888777653
No 350
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.03 E-value=3.2e+02 Score=21.44 Aligned_cols=60 Identities=3% Similarity=-0.065 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhhcchHHHHHHHHHHHHcCCCC--ChhHHHHHHH------HHHhcCCHHHHHHHHhh
Q 009967 240 HSTLPCAIIAAANIAALGMGKSFHACAVKFLGKL--DVFVGNSLIS------FYAKCGSMEDSLLVFDK 300 (521)
Q Consensus 240 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~g~~~~A~~~~~~ 300 (521)
...|...+..+.. |++-.|.++++..=+....+ ....+..||+ ...+.|+...|..++.+
T Consensus 33 ~~~~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~ 100 (161)
T 2ijq_A 33 RRAVVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRT 100 (161)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
No 351
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.01 E-value=2.8e+02 Score=20.74 Aligned_cols=61 Identities=5% Similarity=-0.002 Sum_probs=40.7
Q ss_pred HhHHCCCCCChhhHHHHHHHHcCCC-ChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHcCCCH
Q 009967 98 RMLLLNIRPSEFTFGSVIPSSTALE-DLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI 159 (521)
Q Consensus 98 ~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 159 (521)
.|.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 45667777665543 3444555555 6788999999998877666766666667777776644
Done!