Query 009969
Match_columns 521
No_of_seqs 248 out of 1039
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 16:59:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 3.8E-79 1.3E-83 623.2 29.1 229 250-483 78-308 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 1.2E-73 4.2E-78 583.5 28.1 227 250-479 80-314 (316)
3 1i9z_A Synaptojanin, phosphati 100.0 6.6E-72 2.3E-76 577.0 29.4 230 249-490 100-329 (347)
4 2xsw_A 72 kDa inositol polypho 100.0 1.2E-64 4.2E-69 524.7 24.9 230 248-482 84-326 (357)
5 2imq_X Salivary nitrophorin; f 100.0 1.3E-55 4.3E-60 440.8 22.7 206 249-478 71-282 (282)
6 4gz1_A Tyrosyl-DNA phosphodies 98.9 8.7E-09 3E-13 95.6 12.4 66 290-368 97-162 (256)
7 3teb_A Endonuclease/exonucleas 98.8 5.7E-08 1.9E-12 91.8 15.0 62 292-369 120-181 (266)
8 1zwx_A SMCL, sphingomyelinase- 98.7 1.6E-07 5.6E-12 91.0 13.2 70 292-370 128-201 (301)
9 4fva_A 5'-tyrosyl-DNA phosphod 98.7 1.3E-07 4.3E-12 88.0 11.2 100 254-369 71-170 (256)
10 4f1h_A Tyrosyl-DNA phosphodies 98.6 2.2E-07 7.6E-12 84.4 10.3 62 293-367 94-155 (250)
11 3l1w_A Uncharacterized protein 98.5 1.4E-06 4.6E-11 82.6 12.9 168 260-477 70-252 (257)
12 3g6s_A Putative endonuclease/e 98.4 7.7E-07 2.6E-11 84.9 10.8 139 293-476 114-260 (267)
13 3i41_A Beta-hemolysin; beta to 98.4 8.8E-07 3E-11 88.4 11.4 69 292-369 147-219 (317)
14 4gew_A 5'-tyrosyl-DNA phosphod 98.4 1.3E-06 4.5E-11 89.6 12.0 105 248-368 171-275 (362)
15 2ddr_A Sphingomyelin phosphodi 98.3 2.6E-06 9E-11 82.5 11.9 69 292-369 128-200 (306)
16 1ako_A Exonuclease III; AP-end 98.3 2E-06 6.9E-11 81.2 10.1 68 293-370 87-157 (268)
17 3mpr_A Putative endonuclease/e 98.2 5.9E-06 2E-10 81.0 11.4 62 293-367 118-181 (298)
18 1vyb_A ORF2 contains A reverse 97.7 0.0003 1E-08 64.8 11.6 54 297-369 97-150 (238)
19 1wdu_A TRAS1 ORF2P; four-layer 97.5 0.00026 8.9E-09 66.9 8.9 57 294-368 102-158 (245)
20 2jc4_A Exodeoxyribonuclease II 97.5 0.00028 9.6E-09 65.9 8.9 53 308-370 98-152 (256)
21 2o3h_A DNA-(apurinic or apyrim 97.4 0.00012 3.9E-09 70.5 5.3 52 307-369 130-182 (285)
22 2j63_A AP-endonuclease; base e 97.3 0.0011 3.6E-08 71.0 10.8 34 442-475 430-465 (467)
23 2jc5_A Exodeoxyribonuclease; h 97.2 8.1E-05 2.8E-09 69.7 1.5 36 442-477 220-257 (259)
24 1hd7_A DNA-(apurinic or apyrim 97.1 0.00029 1E-08 69.8 4.5 52 307-369 163-215 (318)
25 4b8c_D Glucose-repressible alc 97.0 0.00016 5.4E-09 80.6 1.2 74 305-383 545-619 (727)
26 3g91_A MTH0212, exodeoxyribonu 96.7 0.0012 4.2E-08 62.8 5.1 34 442-475 221-256 (265)
27 2voa_A AF_EXO, XTHA, exodeoxyr 96.6 0.004 1.4E-07 58.3 7.2 34 442-475 217-256 (257)
28 3ngq_A CCR4-NOT transcription 96.3 0.011 3.9E-07 61.9 9.5 74 307-385 195-271 (398)
29 1sr4_B CDT B, cytolethal diste 96.0 0.017 5.8E-07 57.6 8.6 60 294-367 121-180 (261)
30 2ei9_A Non-LTR retrotransposon 95.8 0.027 9.2E-07 54.1 8.6 56 294-369 77-132 (240)
31 2xsw_A 72 kDa inositol polypho 95.7 0.005 1.7E-07 63.7 3.2 29 3-44 56-84 (357)
32 2a40_B Deoxyribonuclease-1; WA 92.1 0.14 4.7E-06 48.7 4.9 103 248-369 60-173 (260)
33 2f1n_A CDT B, cytolethal diste 71.1 3.9 0.00013 40.8 4.8 59 294-367 130-188 (262)
34 3pt1_A UPF0364 protein YMR027W 22.2 17 0.00057 39.1 -0.4 15 354-368 375-389 (471)
35 2a40_B Deoxyribonuclease-1; WA 21.3 23 0.00078 33.2 0.4 13 462-474 247-259 (260)
36 2yka_B ORF57 protein, 52 kDa i 26.7 20 0.00069 23.3 0.0 10 437-446 7-16 (26)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=3.8e-79 Score=623.23 Aligned_cols=229 Identities=38% Similarity=0.680 Sum_probs=215.9
Q ss_pred CeEEEEeeeeeeeeeeeeEecccccccceeEEeEEecccCcccCCeeEEEEEEEECCEEEEEEeecCCCCCCCcChhHHh
Q 009969 250 SYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRN 329 (521)
Q Consensus 250 ~Yv~v~s~qmvGi~L~Vfvr~~l~~~I~~v~~~~V~tG~~G~~GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~Rn 329 (521)
+|++|.+.||+||+|+||||+++.++|++|++++||||++|++||||||+|||.+++++||||||||+||+++ .++||
T Consensus 78 ~Y~~v~s~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~--~~~Rn 155 (313)
T 3mtc_A 78 KYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEE--YERRN 155 (313)
T ss_dssp CEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHH
T ss_pred CEEEEEEechhhhhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEECCcEEEEEeeccCCCchH--HHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999874 68999
Q ss_pred HHHHHHHHhcCCCCCcCCCCCCccCccceEEEeCccccccc-CChHHHHHHHhhhchHHHHhhhhhHHHHhcCCCccccC
Q 009969 330 ADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN-LPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWS 408 (521)
Q Consensus 330 ~d~~~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNYRI~-l~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~~F~gF~ 408 (521)
+||.+|++++.|........|..|.+||+|||||||||||+ ++.++++++|++++|+.||++|||++++++|.+|.||.
T Consensus 156 ~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~ 235 (313)
T 3mtc_A 156 QDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFT 235 (313)
T ss_dssp HHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBCSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSCTTCB
T ss_pred HHHHHHHHhcccCCCCCccCCccccCCceEEEeccccccccCCCHHHHHHHHhcCCHHHHHHhHHHHHHHHcCCccCCcc
Confidence 99999999999975433334667899999999999999996 88999999999999999999999999999999999999
Q ss_pred cCCcccCCCcccccCCccccCCCCCCCCCCCccccceeecCCCeeEeeecc-CccCCCCCCCcceeEEEEEEecCh
Q 009969 409 EGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYGKGMRLLNYRR-NEIKMSDHRPVTATYMAEVEVFSP 483 (521)
Q Consensus 409 E~~I~FpPTYKy~~gs~~Y~~~d~s~kkR~PSWCDRIL~~~~~i~~l~Y~s-~el~~SDHrPV~A~F~v~V~v~~~ 483 (521)
|++|+|||||||++|++.|+ +++|+|+|||||||||++++++++.|.+ .++.+||||||+|.|.++++|+.+
T Consensus 236 E~~I~F~PTYKyd~~s~~yd---ts~k~R~PsWcDRIL~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~~~~~~~~~ 308 (313)
T 3mtc_A 236 EGELTFQPTYKYDTGSDDWD---TSEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVFDIGVRVVAH 308 (313)
T ss_dssp CCCCCSCCCBCBCTTSSSBC---CSTTCCCCBCCEEEEEEESSEEEEEEEECTTCCSSSSCCEEEEEEEEEEEECC
T ss_pred cCCcCcCCCccCcCCCcccc---cccCEecccccceEEEecCCeEEEeeeeccCccCCCccCeEEEEEEEEEEeec
Confidence 99999999999999999996 5789999999999999999999999998 689999999999999999999864
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=1.2e-73 Score=583.47 Aligned_cols=227 Identities=32% Similarity=0.514 Sum_probs=194.5
Q ss_pred CeEEEEeeeeeeeeeeeeEecccccccceeEEeEEecccCcccCCeeEEEEEEEECCEEEEEEeecCCCCCCCcChhHHh
Q 009969 250 SYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRN 329 (521)
Q Consensus 250 ~Yv~v~s~qmvGi~L~Vfvr~~l~~~I~~v~~~~V~tG~~G~~GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~Rn 329 (521)
.|++|.++||+||+|+||||+++.++|++|++++||||++|++||||||+|+|.+++++||||||||+||+++ .++||
T Consensus 80 ~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~~~--~~~Rn 157 (316)
T 4a9c_A 80 DYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEK--TARRN 157 (316)
T ss_dssp CCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHH
T ss_pred CEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEEEeccccCchH--HHHHH
Confidence 4889999999999999999999999999999999999999999999999999999999999999999999874 68999
Q ss_pred HHHHHHHHhcCCCCCcCCCCCCccCccceEEEeCcccccccCChHHHHHHHhhhchHHHHhhhhhHHHHhcCCCccccCc
Q 009969 330 ADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSE 409 (521)
Q Consensus 330 ~d~~~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNYRI~l~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~~F~gF~E 409 (521)
+||.+|++++.|.... ........+||||||||||||||+++.++++++|++++|..||++|||++|+++|++|.||.|
T Consensus 158 ~d~~~I~~~l~f~~~~-~~~~d~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E 236 (316)
T 4a9c_A 158 QNYLDILRLLSLGDRQ-LNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSE 236 (316)
T ss_dssp HHHHHHHHHCCC--------CCTTTTSSEEEEEEECCCCBSSCHHHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTTCBC
T ss_pred HHHHHHHHhCCCCCCC-cCccccCCcCCeEEEcCCccCCcCCCHHHHHHHHhcccHHHHhccChHHHHHhcCCccccccc
Confidence 9999999999985321 111122357899999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCcccccCCc-cccCC---CCCCCCCCCccccceeecCC---CeeEeeecc-CccCCCCCCCcceeEEEEEE
Q 009969 410 GTLIFAPTYKYELNSE-KYYGE---DPKVGRRNPSWCDRILSYGK---GMRLLNYRR-NEIKMSDHRPVTATYMAEVE 479 (521)
Q Consensus 410 ~~I~FpPTYKy~~gs~-~Y~~~---d~s~kkR~PSWCDRIL~~~~---~i~~l~Y~s-~el~~SDHrPV~A~F~v~V~ 479 (521)
++|+|||||||+.|++ .|+++ +++.++|+|||||||||++. .++++.|.+ .++.+||||||+|.|.++|.
T Consensus 237 ~~i~F~PTYKy~~~s~~~y~~~~~~~~~~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~V~ 314 (316)
T 4a9c_A 237 EEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVGVT 314 (316)
T ss_dssp CCCCSCCCBCBCTTCSSCBCCC--------CCCCBCCEEEEEEECTTCCEEEEEEEECSSCCSSSSCCEEEEEEEECC
T ss_pred CCcccCCCccccCCCcccccccccccccccccCCcccceEEeccCCCCceEEeeecccCCcCCCCcccEEEEEEEEEE
Confidence 9999999999999995 56543 23456899999999999974 588999997 79999999999999988874
No 3
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=6.6e-72 Score=576.98 Aligned_cols=230 Identities=34% Similarity=0.589 Sum_probs=211.8
Q ss_pred CCeEEEEeeeeeeeeeeeeEecccccccceeEEeEEecccCcccCCeeEEEEEEEECCEEEEEEeecCCCCCCCcChhHH
Q 009969 249 SSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKR 328 (521)
Q Consensus 249 ~~Yv~v~s~qmvGi~L~Vfvr~~l~~~I~~v~~~~V~tG~~G~~GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~R 328 (521)
..|+++.+.||+|++|+||+|.++.++|++|++++++||++|.+||||||+++|.+++++||||||||+||+.+ ..+|
T Consensus 100 ~~Y~~v~s~~l~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~~~~l~fvn~HLaa~~~~--~~~R 177 (347)
T 1i9z_A 100 PGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN--YDER 177 (347)
T ss_dssp CCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCCSSC--HHHH
T ss_pred CceeEEEEeeccceEEEEEEehHhhhhccceeeeeEeccCCCccCCCceEEEEEEECCeEEEEEEecCCCCCcc--HHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999875 4689
Q ss_pred hHHHHHHHHhcCCCCCcCCCCCCccCccceEEEeCcccccccCChHHHHHHHhhhchHHHHhhhhhHHHHhcCCCccccC
Q 009969 329 NADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWS 408 (521)
Q Consensus 329 n~d~~~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNYRI~l~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~~F~gF~ 408 (521)
|+|+.+|++++.|.. +..|.+||++||||||||||+++.+.+.++|++++|..|+++|||++++++|++|.||.
T Consensus 178 ~~d~~~I~~~l~f~~------~~~i~~~d~v~~~GDlNyRi~~~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~f~ 251 (347)
T 1i9z_A 178 DHDYRTIASGLRFRR------GRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFS 251 (347)
T ss_dssp HHHHHHHHHHCCCGG------GCCTTSSSEEEEEEECCCCBSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCB
T ss_pred HHHHHHHHHhhccCc------ccccccCccEEEecccccccCCCHHHHHHHHhhccHHHhhcccHHHHHHhcCCcccccc
Confidence 999999999988852 24577899999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCCcccccCCccccCCCCCCCCCCCccccceeecCCCeeEeeeccCccCCCCCCCcceeEEEEEEecChhhhhh
Q 009969 409 EGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYGKGMRLLNYRRNEIKMSDHRPVTATYMAEVEVFSPRKLQR 488 (521)
Q Consensus 409 E~~I~FpPTYKy~~gs~~Y~~~d~s~kkR~PSWCDRIL~~~~~i~~l~Y~s~el~~SDHrPV~A~F~v~V~v~~~~k~qr 488 (521)
|++|+|+|||||+.+++.|+ +++++|+|||||||||++ .++++.|.+.++.+||||||+|.|.+.|+++++++.++
T Consensus 252 E~~i~F~PTYK~~~~~~~yd---~s~k~R~PsWcDRIL~~~-~l~~~~Y~~~~~~~SDH~PV~a~f~~~v~~~~~~~~~~ 327 (347)
T 1i9z_A 252 ELPITFPPTYKFDIGTDIYD---TSDKHRVPAWTDRILYRG-ELVPHSYQSVPLYYSDHRPIYATYEANIVKVDREKKKI 327 (347)
T ss_dssp CCCCCSCCCBCBCTTSSCBC---CSTTCCCCBCCEEEEEES-SCEEEEEEECCCCSSSBCCEEEEEEEEEEEECHHHHHH
T ss_pred cCCCCCCCCcccCCCCcccc---ccccccCCcccceEEEeC-CEEEEEEEecCccCCCcCCceeEEEEEEecCCHHHHHH
Confidence 99999999999999999996 578999999999999998 89999999977999999999999999999999887665
Q ss_pred hc
Q 009969 489 AL 490 (521)
Q Consensus 489 ~l 490 (521)
..
T Consensus 328 ~~ 329 (347)
T 1i9z_A 328 LF 329 (347)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 4
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.2e-64 Score=524.72 Aligned_cols=230 Identities=27% Similarity=0.481 Sum_probs=208.6
Q ss_pred CCCeEEEEeeeeeeeeeeeeEecccccccceeEEeEEecccCcccCCeeEEEEEEEECCEEEEEEeecCCCCCCCcChhH
Q 009969 248 RSSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELK 327 (521)
Q Consensus 248 ~~~Yv~v~s~qmvGi~L~Vfvr~~l~~~I~~v~~~~V~tG~~G~~GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~ 327 (521)
+..|+++.+.+|+|++|+||+|+++.++|+++++++|+||++|++||||||+|+|.+++++||||||||+||+++ .++
T Consensus 84 ~~~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~~~~--~~~ 161 (357)
T 2xsw_A 84 GPHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGK--VAE 161 (357)
T ss_dssp CTTEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCSTTC--HHH
T ss_pred CCcccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCCCch--HHH
Confidence 568999999999999999999999999999999999999999999999999999999999999999999999874 589
Q ss_pred HhHHHHHHHHhcCCCCCcCCCCC------CccCccceEEEeCcccccccCChHHHHHHHh---hhchHHHHhhhhhHHHH
Q 009969 328 RNADVHEIHRRTHFRSHSEIGFP------KSICDHERIIWLGDLNYRINLPYEKTRELIS---KKQWSKLAESDQLLREL 398 (521)
Q Consensus 328 Rn~d~~~I~rr~~F~~~~~~~~p------~~I~d~D~vfw~GDLNYRI~l~~~ev~~lI~---~~~~~~LL~~DQL~~e~ 398 (521)
||+||.+|++++.|........| ..+.+||++||+|||||||+++++++.++|. .++|+.|+++|||++++
T Consensus 162 Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~~~~~~~~Ll~~DQL~~~~ 241 (357)
T 2xsw_A 162 RLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLIREM 241 (357)
T ss_dssp HHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSSCHHHHHHHHC---CCCHHHHHTTBHHHHHH
T ss_pred HHHHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccccchHHHHHHHhhcchhhHHHHHhcChhHHHH
Confidence 99999999999998532111111 1245789999999999999999999999986 47899999999999999
Q ss_pred hcCCCccccCcCCcccCCCcccccCCccccCCCCCCCCCCCccccceeecC---CCeeEeeecc-CccCCCCCCCcceeE
Q 009969 399 RKGRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYG---KGMRLLNYRR-NEIKMSDHRPVTATY 474 (521)
Q Consensus 399 ~~g~~F~gF~E~~I~FpPTYKy~~gs~~Y~~~d~s~kkR~PSWCDRIL~~~---~~i~~l~Y~s-~el~~SDHrPV~A~F 474 (521)
++|.+|.||.|++|+|||||||+.|++.|+ +++|+|+|||||||||++ ..++++.|.+ .++++||||||+|.|
T Consensus 242 ~~g~~F~gf~E~~I~F~PTYKy~~~t~~Yd---ts~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f 318 (357)
T 2xsw_A 242 RKGSIFKGFQEPDIHFLPSYKFDIGKDTYD---STSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLF 318 (357)
T ss_dssp HHTSSSTTCBCCCCCSCCCBCBCTTSSSBC---CSTTCCCCBCCEEEEEEESSTTSEEEEEEEECTTCCSSSSCCEEEEE
T ss_pred hccccccCccccCCCCCCCccccCCCcccc---ccCCCCCCcccceEEEecCCCCceEEEEeEecccccCCCcCCceeEE
Confidence 999999999999999999999999999996 678999999999999996 3689999998 689999999999999
Q ss_pred EEEEEecC
Q 009969 475 MAEVEVFS 482 (521)
Q Consensus 475 ~v~V~v~~ 482 (521)
.+.|....
T Consensus 319 ~v~v~~~~ 326 (357)
T 2xsw_A 319 RVKVRPGR 326 (357)
T ss_dssp EEECCCCC
T ss_pred EEEEecCC
Confidence 99987654
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=1.3e-55 Score=440.76 Aligned_cols=206 Identities=22% Similarity=0.428 Sum_probs=185.0
Q ss_pred CCeEEEEe--eeeeeeeeeeeEecccccccceeEEeEEecccCcccCCeeEEEEEEEECCEEEEEEeecCCCCCCCcChh
Q 009969 249 SSYVRMVS--KQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDEL 326 (521)
Q Consensus 249 ~~Yv~v~s--~qmvGi~L~Vfvr~~l~~~I~~v~~~~V~tG~~G~~GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~ 326 (521)
..|+++.+ .+|+|++++||+|.++.++|+++.+ +|++|.+||||||+++|.++++.||||||||+|++.+ .+
T Consensus 71 ~~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~----~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~--~~ 144 (282)
T 2imq_X 71 KGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETI----IVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVT--ST 144 (282)
T ss_dssp TTEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEE----EEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCC--TT
T ss_pred CceEEEEeccCceeEEEEEEEEccccCccceeeee----ccccccccCCceEEEEEEECCEEEEEEEECCCCCCch--HH
Confidence 35777777 8999999999999999988888765 4667889999999999999999999999999999653 36
Q ss_pred HHhHHHHHHHHhcCCCCCcCCCCCCccCccceEEEeCcccccccCChHHHHHHHhhhchHHHHhhhhhHHHHhcCCCccc
Q 009969 327 KRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDG 406 (521)
Q Consensus 327 ~Rn~d~~~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNYRI~l~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~~F~g 406 (521)
+|++|+..|++++.+ +.+++++||+||||||++.+.+++.++|++++|..|+++|||.++++ |.+|.|
T Consensus 145 ~R~~~~~~I~~~~~~-----------~~~~~~vi~~GDfN~r~~~~~~~~~~~i~~~~~~~l~~~DqL~~~~~-~~~f~~ 212 (282)
T 2imq_X 145 NTKYAYDTRLDYSKK-----------DDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKE-QKLFDG 212 (282)
T ss_dssp SSSSSCCGGGCTTSS-----------SSCCSEEEEEEECSCCBCSCHHHHHHHHHTTCHHHHHTTBTHHHHHH-TTSSTT
T ss_pred HHHHHHHHHHHhhhc-----------cCccceEEEecccccccCCCHHHHHHHHhhccHHHHhhhhHHHHhhc-cccccc
Confidence 799999999876433 34678999999999999999999999999999999999999999999 999999
Q ss_pred cCcCCcccCCCcccccCCccccCCCCCCCCCCCccccceeecC---CCeeEeeeccC-ccCCCCCCCcceeEEEEE
Q 009969 407 WSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYG---KGMRLLNYRRN-EIKMSDHRPVTATYMAEV 478 (521)
Q Consensus 407 F~E~~I~FpPTYKy~~gs~~Y~~~d~s~kkR~PSWCDRIL~~~---~~i~~l~Y~s~-el~~SDHrPV~A~F~v~V 478 (521)
|.|++|+|+|||||+.++++|+ .+|+|||||||||++ ..++++.|.+. ++.+|||+||+|.|.+++
T Consensus 213 f~e~~i~f~PTYk~~~~~~~y~------~~R~Psw~DrIl~~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~~~~ 282 (282)
T 2imq_X 213 WTEPQVTFKPTYKFKPNTDEYD------LSATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL 282 (282)
T ss_dssp CBCCCCCSCCCBCBCTTSSCBC------TTSCCBCCEEEEEECSSSCCEEEEEEEECTTCCSSSSCCEEEEEEEEC
T ss_pred cccCCcCCCCCccccCCCcccc------ccCCccccceEEEecCCCCceEeeEecCCCCCCCCCcCCeEEEEEEEC
Confidence 9999999999999999999996 369999999999996 46899999985 899999999999998764
No 6
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=98.91 E-value=8.7e-09 Score=95.64 Aligned_cols=66 Identities=21% Similarity=0.345 Sum_probs=49.1
Q ss_pred cccCCeeEEEEEEEECCEEEEEEeecCCCCCCCcChhHHhHHHHHHHHhcCCCCCcCCCCCCccCccceEEEeCccccc
Q 009969 290 GFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 368 (521)
Q Consensus 290 G~~GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~Rn~d~~~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNYR 368 (521)
+....++.+.+.+.+.+..+.++|+||.++... ...|.+++..|++.+.-. .....+|++||||.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~l~~~-----------~~~~pvIl~GDfN~~ 162 (256)
T 4gz1_A 97 NTKMMRNLLCVNVSLGGNEFCLMTSHLESTREH--SAERIRQLKTVLGKMQEA-----------PDSTTVIFAGDTNLR 162 (256)
T ss_dssp TCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHHHS-----------CTTSEEEEEEECCCC
T ss_pred cccccceEEEEEEEeCCEEEEEEeecccccccc--hhhhhHHHHHHhhhhhhc-----------cCcceEEEeCccCCC
Confidence 445568899999999999999999999987543 356778888887653210 122459999999973
No 7
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=98.83 E-value=5.7e-08 Score=91.76 Aligned_cols=62 Identities=19% Similarity=0.298 Sum_probs=48.8
Q ss_pred cCCeeEEEEEEEECCEEEEEEeecCCCCCCCcChhHHhHHHHHHHHhcCCCCCcCCCCCCccCccceEEEeCcccccc
Q 009969 292 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 369 (521)
Q Consensus 292 ~GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~Rn~d~~~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNYRI 369 (521)
+..+|++.+++.+.+..|+++|+||.+.... ...|..++..|++.+. ....+|++||||-.-
T Consensus 120 ~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~r~~q~~~l~~~~~--------------~~~~~il~GDfN~~~ 181 (266)
T 3teb_A 120 ISARRIVSITINYEGQDIEFYSCHMNLPNCE--TEDMGKNIQTILNRTQ--------------NSNLKILMGDFNTDA 181 (266)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCTTCT--TCCHHHHHHHHHTSSC--------------SCCEEEEEEECCCCT
T ss_pred cccceEEEEEEEeCCeEEEEEEecCCCccCC--hHHHHHHHHHHHHHHh--------------cCCcEEEEeECCCCC
Confidence 4569999999999999999999999987532 2368889999876421 035699999999854
No 8
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=98.67 E-value=1.6e-07 Score=91.02 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=50.1
Q ss_pred cCCeeEEEEEEEECCEEEEEEeecCCCCCCC----cChhHHhHHHHHHHHhcCCCCCcCCCCCCccCccceEEEeCcccc
Q 009969 292 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKD----GDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 367 (521)
Q Consensus 292 ~GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~----~~~~~Rn~d~~~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNY 367 (521)
..++|++.+.+.+.+..|.++|+||.+.... .....|..++..|.+.+.-. .. .....+|++||||-
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~-----~~----~~~~pvIl~GDfN~ 198 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKK-----NI----PKDEIIFIGGDLNV 198 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-----TC----CTTSEEEEEEECCC
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHh-----CC----CCCCeEEEEeeCCC
Confidence 3579999999999999999999999987532 13456888888887643210 00 12256999999998
Q ss_pred ccc
Q 009969 368 RIN 370 (521)
Q Consensus 368 RI~ 370 (521)
.-+
T Consensus 199 ~~~ 201 (301)
T 1zwx_A 199 NYG 201 (301)
T ss_dssp CTT
T ss_pred CCC
Confidence 543
No 9
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=98.65 E-value=1.3e-07 Score=88.00 Aligned_cols=100 Identities=15% Similarity=0.061 Sum_probs=59.0
Q ss_pred EEeeeeeeeeeeeeEecccccccceeEEeEEecccCcccCCeeEEEEEEEECCEEEEEEeecCCCCCCCcChhHHhHHHH
Q 009969 254 MVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVH 333 (521)
Q Consensus 254 v~s~qmvGi~L~Vfvr~~l~~~I~~v~~~~V~tG~~G~~GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~Rn~d~~ 333 (521)
.....-.+-...|++++.+. ......+.. .+..+.++.+.+.+.+.+..|.++|+||.+.... ...|..++.
T Consensus 71 ~~~~~~~~~g~~il~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~--~~~~~~q~~ 142 (256)
T 4fva_A 71 YYSNKGCQYYTAILVSKMFD----VEKHDVIHF--QNSGMYRTLQILEGSIGGLKVFLLNTHLESTREH--RPQRCAQFG 142 (256)
T ss_dssp EESSTTSSSEEEEEEETTCE----EEEEEEEEC--TTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHH
T ss_pred eecCCCCCcceEEEEeeccc----ceecccccC--CCCcccceeEEEEEEeCCeEEEEEEecCCCCCcc--hHHHHHHHH
Confidence 33333344445566665432 222222322 2333467888999999999999999999987543 345666666
Q ss_pred HHHHhcCCCCCcCCCCCCccCccceEEEeCcccccc
Q 009969 334 EIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 369 (521)
Q Consensus 334 ~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNYRI 369 (521)
.++..+.... .......+|++||||.+-
T Consensus 143 ~~~~~~~~~~--------~~~~~~~vIl~GDfN~~~ 170 (256)
T 4fva_A 143 FCMDKVREII--------AQNPGALVFFGGDLNLRD 170 (256)
T ss_dssp HHHHHHHHHH--------HHSTTCEEEEEEECCCCG
T ss_pred HHHHHhhhhh--------hccCCCcEEEeccCCCCc
Confidence 6654321100 001224699999999743
No 10
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=98.58 E-value=2.2e-07 Score=84.41 Aligned_cols=62 Identities=13% Similarity=0.232 Sum_probs=46.3
Q ss_pred CCeeEEEEEEEECCEEEEEEeecCCCCCCCcChhHHhHHHHHHHHhcCCCCCcCCCCCCccCccceEEEeCcccc
Q 009969 293 GNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 367 (521)
Q Consensus 293 GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~Rn~d~~~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNY 367 (521)
...+.+.+.+.+.+..+.++++||.+.... ...|..++..|++.+.=. .....+|++||||.
T Consensus 94 ~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~--~~~r~~q~~~~~~~l~~~-----------~~~~pvIl~GDfN~ 155 (250)
T 4f1h_A 94 MMRNLLIAQVTFSGQKLYLMTSHLESCKNQ--SQERTKQLRVVLQKIKEA-----------PEDAIVIFAGDTNL 155 (250)
T ss_dssp SCCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHHHS-----------CTTEEEEEEEECCC
T ss_pred ccceEEEEEEecCCcEEEEecccccccccc--HHHHHHHHHHHHHHHHhc-----------CCCCCEEEEEecCC
Confidence 346778888999999999999999987543 357888888887753210 12245999999996
No 11
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=98.47 E-value=1.4e-06 Score=82.60 Aligned_cols=168 Identities=21% Similarity=0.116 Sum_probs=91.7
Q ss_pred eeeeeeeeEecccccccceeEE--e----EEecccCcccCCeeEEEEEEEEC--CEEEEEEeecCCCCCCCcChhHHhHH
Q 009969 260 VGIFLTIWVRRSLRRHIQNVRV--S----TVGVGVMGFIGNKGSVSVSMSIH--QTLFCFVCAHLTSGEKDGDELKRNAD 331 (521)
Q Consensus 260 vGi~L~Vfvr~~l~~~I~~v~~--~----~V~tG~~G~~GNKGaV~vr~~i~--~t~~~FVn~HLaA~~~~~~~~~Rn~d 331 (521)
.|..+.|+.|++..+.+..-.. + ..+.|. +....++++.+.+... +..+.++|+||.+.. ...|..+
T Consensus 70 ~~~g~ail~r~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~r~~q 144 (257)
T 3l1w_A 70 QGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHP-EAGCPRIALWGLFKETTQNTPFLVINVHLDHIS----AHARLAG 144 (257)
T ss_dssp CSCEEEEEECTTTEEEEEEEEEESSSSTTSSCCCT-TCSSCCEEEEEEEEETTCSSCEEEEEEECCSSC----HHHHHHH
T ss_pred CCceEEEEEEcceEEEEecCeEECcCCCCcccccc-cccccceeEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHH
Confidence 4556778888664332221111 0 011111 2344788999999884 678999999999863 2578899
Q ss_pred HHHHHHhcCCCCCcCCCCCCccCccceEEEeCcccccccCChHHHHHHHhhhchHHHHhhhhhHHHHhcCCCccccCcCC
Q 009969 332 VHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGT 411 (521)
Q Consensus 332 ~~~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNYRI~l~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~~F~gF~E~~ 411 (521)
+..|++.+.- .+ ..+.+|++||||-. +.+...+.+..+ + ..-|....
T Consensus 145 ~~~l~~~i~~----------~~-~~~pvil~GDfN~~---~~~~~~~~l~~~-l------------------~d~~~~~~ 191 (257)
T 3l1w_A 145 MTVILEELHD----------KI-AQYPTLLMGDFNAE---SGEEVHQLVQKK-F------------------QDSKNLAT 191 (257)
T ss_dssp HHHHHHHTHH----------HH-HHSCEEEEEECCCC---TTSHHHHHHTTT-C------------------EEGGGTSE
T ss_pred HHHHHHHHHH----------Hc-CCCCEEEEeeCCCC---CCcHHHHHhhhh-c------------------cchhhhhc
Confidence 9988875420 00 01259999999973 333333333211 0 01111110
Q ss_pred c-ccCCCcccccCCccccCCCCC-CCCCCCccccceeecCCCeeEeeeccC-----ccCCCCCCCcceeEEEE
Q 009969 412 L-IFAPTYKYELNSEKYYGEDPK-VGRRNPSWCDRILSYGKGMRLLNYRRN-----EIKMSDHRPVTATYMAE 477 (521)
Q Consensus 412 I-~FpPTYKy~~gs~~Y~~~d~s-~kkR~PSWCDRIL~~~~~i~~l~Y~s~-----el~~SDHrPV~A~F~v~ 477 (521)
. ...+||.-..+. .+. .+.| .|+||. .++++..+... ....|||.||.+.|.+.
T Consensus 192 ~~~~~~t~~~~~~~------~~~~~~~r----iD~i~~--~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~~~ 252 (257)
T 3l1w_A 192 HYGPRGTFQNFTYT------KPWAELEE----IDYIYV--KGWQVQQTASLTDSIDGRFPSDHFPLEAEVAGE 252 (257)
T ss_dssp EESCSCCBCTTCTT------CCGGGCBC----CEEEEE--ESEEEEEEEECCCCBTTBCSSSBCCEEEEEEEC
T ss_pred ccCCCCcccCCccc------CCCCCCCc----eeEEEE--CCcEEEEEEEeccCcCCcccCCcceEEEEEEEE
Confidence 0 112233111000 000 1134 799999 56777666542 24689999999998653
No 12
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=98.45 E-value=7.7e-07 Score=84.94 Aligned_cols=139 Identities=16% Similarity=0.116 Sum_probs=78.3
Q ss_pred CCeeEEEEEEEE--CCEEEEEEeecCCCCCCCcChhHHhHHHHHHHHhcCCCCCcCCCCCCccCccceEEEeCccccccc
Q 009969 293 GNKGSVSVSMSI--HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN 370 (521)
Q Consensus 293 GNKGaV~vr~~i--~~t~~~FVn~HLaA~~~~~~~~~Rn~d~~~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNYRI~ 370 (521)
.+++++.+.+.. .+..|+++|+||.+.. ...|.++...|.+.+.= +.....+|++||||-
T Consensus 114 ~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~l~~-----------~~~~~pvIl~GDfN~--- 175 (267)
T 3g6s_A 114 CVRIATWAKFKDKATGKIFMAVNTHFDHVG----EEARRQSALLIIRKIKE-----------IVGERPAVVTGDFNV--- 175 (267)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHH-----------HTTTSCEEEEEECSS---
T ss_pred CcceEEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHH-----------hcCCCCEEEEeECCC---
Confidence 468899999985 5789999999998753 35788888877764321 001234999999997
Q ss_pred CChHHHHHHHhhhchHHHHhhhhhHHHHhcCCCccccCcCCccc--CCCcccccCCccccCCCCCCCCCCCccccceeec
Q 009969 371 LPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIF--APTYKYELNSEKYYGEDPKVGRRNPSWCDRILSY 448 (521)
Q Consensus 371 l~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~~F~gF~E~~I~F--pPTYKy~~gs~~Y~~~d~s~kkR~PSWCDRIL~~ 448 (521)
.+.+.+.+.+..... ..-..|.+....+ .+||........ ....| .||||..
T Consensus 176 ~~~~~~~~~l~~~~~----------------~l~d~~~~~~~~~~~~~T~~~~~~~~~------~~~~r----iD~I~~s 229 (267)
T 3g6s_A 176 TDASDAYETITTNEF----------------VMKDAYKTAARVTGVDYTFHDFARIPA------EDCEK----IDFIFVT 229 (267)
T ss_dssp CTTSHHHHHHHSSSS----------------CCEEHHHHCSEEEECSCSBCTTTTSCG------GGCCC----CEEEEEC
T ss_pred CCCCHHHHHhhcCCc----------------chhhhHhhhccccCCCCCEeCCCCCCC------CCCCc----EeEEEeC
Confidence 333333333322110 0111122211112 234422111000 01234 8999997
Q ss_pred CCCeeEeeeccCc--c--CCCCCCCcceeEEE
Q 009969 449 GKGMRLLNYRRNE--I--KMSDHRPVTATYMA 476 (521)
Q Consensus 449 ~~~i~~l~Y~s~e--l--~~SDHrPV~A~F~v 476 (521)
+. +++..+.... . ..|||.||.|....
T Consensus 230 ~~-~~~~~~~v~~~~~~~~~SDH~PV~a~~~~ 260 (267)
T 3g6s_A 230 PQ-VLVKSCEIPAEVPEALLSDHNPQLADLEL 260 (267)
T ss_dssp TT-SEEEEEEECCCCSSSCCCSBCCEEEEEEE
T ss_pred CC-ceEEEEEEecCCCCCCCCCcccEEEEEEe
Confidence 63 6666665422 1 57999999987754
No 13
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=98.44 E-value=8.8e-07 Score=88.39 Aligned_cols=69 Identities=23% Similarity=0.256 Sum_probs=50.9
Q ss_pred cCCeeEEEEEEEECCEEEEEEeecCCCCCCC----cChhHHhHHHHHHHHhcCCCCCcCCCCCCccCccceEEEeCcccc
Q 009969 292 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKD----GDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 367 (521)
Q Consensus 292 ~GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~----~~~~~Rn~d~~~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNY 367 (521)
..+||.+.+.+.+.+..|.++|+||.+.... .....|..++..|.+.+.-. ..+ ....+|++||||-
T Consensus 147 ~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~-----~~~----~~~pvIl~GDfN~ 217 (317)
T 3i41_A 147 DSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKK-----NIP----KDETVYIGGDLNV 217 (317)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHH-----TCC----TTSCEEEEEECCC
T ss_pred ccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHh-----ccC----CCCeEEEEeECCC
Confidence 5789999999999999999999999986531 13568999998887643210 011 1245999999998
Q ss_pred cc
Q 009969 368 RI 369 (521)
Q Consensus 368 RI 369 (521)
.-
T Consensus 218 ~~ 219 (317)
T 3i41_A 218 NK 219 (317)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 14
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=98.41 E-value=1.3e-06 Score=89.64 Aligned_cols=105 Identities=16% Similarity=0.090 Sum_probs=65.1
Q ss_pred CCCeEEEEeeeeeeeeeeeeEecccccccceeEEeEEecccCcccCCeeEEEEEEEECCEEEEEEeecCCCCCCCcChhH
Q 009969 248 RSSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELK 327 (521)
Q Consensus 248 ~~~Yv~v~s~qmvGi~L~Vfvr~~l~~~I~~v~~~~V~tG~~G~~GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~ 327 (521)
...|......+-.+-...|++|+.+ ..+........ +.....+++.+.+.+.+..|+++|+||.+... ....
T Consensus 171 ~~~y~~~~~~~~~~~G~aIlsk~~i----~~~~~~~~~~~--~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~--~~~~ 242 (362)
T 4gew_A 171 QSLYKIYYSNKGCQYYTAILVSKMF----DVEKHDVIHFQ--NSGMYRTLQILEGSIGGLKVFLLNTHLESTRE--HRPQ 242 (362)
T ss_dssp GGTEEEEESSTTSSSEEEEEEETTE----EEEEEEEEECT--TCSSCCEEEEEEEEETTEEEEEEEEECCCSGG--GHHH
T ss_pred cCCceEEeCCCCCCceEEEEEeccC----ccccccccCCC--CCcccceEEEEEEEECCEEEEEEEecCCcccc--chhH
Confidence 3456666655555666677777643 22222222221 22234688889999999999999999998754 2457
Q ss_pred HhHHHHHHHHhcCCCCCcCCCCCCccCccceEEEeCccccc
Q 009969 328 RNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 368 (521)
Q Consensus 328 Rn~d~~~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNYR 368 (521)
|..++..+...+.-.. .......+|++||||-+
T Consensus 243 R~~Q~~~l~~~~~~~~--------~~~~~~pvIl~GDFN~~ 275 (362)
T 4gew_A 243 RCAQFGFCMDKVREII--------AQNPGALVFFGGDLNLR 275 (362)
T ss_dssp HHHHHHHHHHHHHHHH--------HHCTTCEEEEEEECCCC
T ss_pred HHHHHHHHHHHhHhhh--------hcCCCCCeEEeecCCCC
Confidence 8888887765422100 00122459999999964
No 15
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=98.35 E-value=2.6e-06 Score=82.49 Aligned_cols=69 Identities=20% Similarity=0.333 Sum_probs=48.5
Q ss_pred cCCeeEEEEEEEECCEEEEEEeecCCCCCCC----cChhHHhHHHHHHHHhcCCCCCcCCCCCCccCccceEEEeCcccc
Q 009969 292 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKD----GDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 367 (521)
Q Consensus 292 ~GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~----~~~~~Rn~d~~~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNY 367 (521)
...+|++.+.+.+.+..+.++|+||.+.... .....|..++..|.+.+.-. ..+ ....+|++||||-
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~-----~~~----~~~pvil~GDfN~ 198 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNK-----NIP----NNEYVLIGGDMNV 198 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHH-----TCC----TTSCEEEEEECCC
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-----cCC----CCCEEEEEeeCCC
Confidence 3578999999999999999999999987421 13457888888887643210 001 1245999999998
Q ss_pred cc
Q 009969 368 RI 369 (521)
Q Consensus 368 RI 369 (521)
.-
T Consensus 199 ~~ 200 (306)
T 2ddr_A 199 NK 200 (306)
T ss_dssp CC
T ss_pred Cc
Confidence 55
No 16
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=98.32 E-value=2e-06 Score=81.18 Aligned_cols=68 Identities=7% Similarity=0.113 Sum_probs=46.3
Q ss_pred CCeeEEEEEEEECCEEEEEEeecCCCCCCCc---ChhHHhHHHHHHHHhcCCCCCcCCCCCCccCccceEEEeCcccccc
Q 009969 293 GNKGSVSVSMSIHQTLFCFVCAHLTSGEKDG---DELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 369 (521)
Q Consensus 293 GNKGaV~vr~~i~~t~~~FVn~HLaA~~~~~---~~~~Rn~d~~~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNYRI 369 (521)
..++++.+++.+.+..|+++|+||.++.... ....|.+++..|.+.+.-. ......+|++||||-..
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~----------~~~~~~~Il~GDFN~~~ 156 (268)
T 1ako_A 87 AQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETE----------LKRDNPVLIMGDMNISP 156 (268)
T ss_dssp HHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHH----------CCTTSCEEEEEECCCCC
T ss_pred cCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHHh----------hhCCCCEEEEeECCCCC
Confidence 4578899999999899999999999876421 1235667777766542200 00224599999999754
Q ss_pred c
Q 009969 370 N 370 (521)
Q Consensus 370 ~ 370 (521)
+
T Consensus 157 ~ 157 (268)
T 1ako_A 157 T 157 (268)
T ss_dssp S
T ss_pred c
Confidence 3
No 17
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=98.23 E-value=5.9e-06 Score=81.01 Aligned_cols=62 Identities=13% Similarity=0.040 Sum_probs=43.8
Q ss_pred CCeeEEEEEEEE--CCEEEEEEeecCCCCCCCcChhHHhHHHHHHHHhcCCCCCcCCCCCCccCccceEEEeCcccc
Q 009969 293 GNKGSVSVSMSI--HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 367 (521)
Q Consensus 293 GNKGaV~vr~~i--~~t~~~FVn~HLaA~~~~~~~~~Rn~d~~~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNY 367 (521)
-+++++.+.|.. .+..|+++|+||.+.. ...|.++...|.+.+.-. .. . ....+|++||||-
T Consensus 118 ~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~i~~~--~~---~----~~~pvIl~GDfN~ 181 (298)
T 3mpr_A 118 LPRICSWGHFKCKDTGFEFLFFNLHMDHIG----KKARVESAFLVQEKMKEL--GR---G----KNLPAILTGDFNV 181 (298)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHHT--TT---T----SCCCEEEEEECSS
T ss_pred cCceeEEEEEEEcCCCCEEEEEEecCCCCC----HHHHHHHHHHHHHHHHHH--hc---C----CCCcEEEEEeCCC
Confidence 367888888884 6789999999998642 357888888887653210 00 0 1245999999996
No 18
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=97.68 E-value=0.0003 Score=64.77 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=35.5
Q ss_pred EEEEEEEECCEEEEEEeecCCCCCCCcChhHHhHHHHHHHHhcCCCCCcCCCCCCccCccceEEEeCcccccc
Q 009969 297 SVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 369 (521)
Q Consensus 297 aV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~Rn~d~~~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNYRI 369 (521)
.+.+.+.+.+..+.++|+|++++.. .| -+..+.+.+.- . ....++++||||-..
T Consensus 97 ~i~~~~~~~~~~~~v~~~y~p~~~~-----~~--~~~~l~~~l~~--~----------~~~~~Il~GDFN~~~ 150 (238)
T 1vyb_A 97 YIMVKGSIQQEELTILNIYAPNTGA-----PR--FIKQVLSDLQR--D----------LDSHTLIMGDFNTPL 150 (238)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSSH-----HH--HHHHHHHHTTT--T----------CCTTEEEEEECSSCS
T ss_pred EEEEEEEeCCCcEEEEEEecCCCCc-----HH--HHHHHHHHHHh--c----------cCCCEEEEccCCCCC
Confidence 5667788889999999999988642 12 23344443221 0 114599999999843
No 19
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=97.51 E-value=0.00026 Score=66.87 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=41.2
Q ss_pred CeeEEEEEEEECCEEEEEEeecCCCCCCCcChhHHhHHHHHHHHhcCCCCCcCCCCCCccCccceEEEeCccccc
Q 009969 294 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 368 (521)
Q Consensus 294 NKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~Rn~d~~~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNYR 368 (521)
..|.+.+.+.+.+..+.++|+|++.+.. ...+.+++..+++.+ . ...+|++||||-.
T Consensus 102 ~~~~~~~~i~~~~~~~~v~~vy~p~~~~---~~~~~~~l~~~~~~~--~-------------~~~~Ii~GDfN~~ 158 (245)
T 1wdu_A 102 TNNIVVVGIRTRAWEITLVSYYFEPDKP---IESYLEQIKRVERKM--G-------------PKRLIFGGDANAK 158 (245)
T ss_dssp CSSEEEEEEECSSCEEEEEEEECCTTSC---SHHHHHHHHHHHHTT--C-------------SSSEEEEEECCCC
T ss_pred cCCEEEEEEEcCCCcEEEEEEEeCCCCC---HHHHHHHHHHHHHHh--C-------------CCcEEEEeccccC
Confidence 5677888888888899999999998753 234555666666531 1 1349999999964
No 20
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=97.50 E-value=0.00028 Score=65.91 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=31.3
Q ss_pred EEEEEeecCCCCCCCc--ChhHHhHHHHHHHHhcCCCCCcCCCCCCccCccceEEEeCccccccc
Q 009969 308 LFCFVCAHLTSGEKDG--DELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN 370 (521)
Q Consensus 308 ~~~FVn~HLaA~~~~~--~~~~Rn~d~~~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNYRI~ 370 (521)
.+.++|+|+.+..... ....|.+.+..|.+.+.- . +.....+|++||||-..+
T Consensus 98 ~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~--~--------~~~~~~~il~GDFN~~~~ 152 (256)
T 2jc4_A 98 GVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRD--E--------MTRHGKLVLLGDFNIAPA 152 (256)
T ss_dssp TEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHH--H--------HTTCSSEEEEEECCCCCS
T ss_pred CEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHHH--H--------hcCCCCEEEEeECCCCCc
Confidence 6999999999876422 123355555555443210 0 001245999999998543
No 21
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=97.42 E-value=0.00012 Score=70.47 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=31.2
Q ss_pred EEEEEEeecCCCCCCC-cChhHHhHHHHHHHHhcCCCCCcCCCCCCccCccceEEEeCcccccc
Q 009969 307 TLFCFVCAHLTSGEKD-GDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 369 (521)
Q Consensus 307 t~~~FVn~HLaA~~~~-~~~~~Rn~d~~~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNYRI 369 (521)
..|.++|+|+.+.... .....|.+.+..|.+.+.- +.....+|++||||-..
T Consensus 130 ~~~~v~~~h~p~~~~~~~~~~~r~~~~~~l~~~l~~-----------~~~~~p~Il~GDFN~~~ 182 (285)
T 2o3h_A 130 DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKG-----------LASRKPLVLCGDLNVAH 182 (285)
T ss_dssp SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHH-----------HHTTSCEEEEEECSCCC
T ss_pred CCEEEEEEEcCCCCCcchhHHHHHHHHHHHHHHHHh-----------hccCCCEEEEEECCCCC
Confidence 4689999999876432 1123466666666543210 00114599999999743
No 22
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=97.26 E-value=0.0011 Score=70.96 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=23.1
Q ss_pred ccceeecCCC-eeEeeecc-CccCCCCCCCcceeEE
Q 009969 442 CDRILSYGKG-MRLLNYRR-NEIKMSDHRPVTATYM 475 (521)
Q Consensus 442 CDRIL~~~~~-i~~l~Y~s-~el~~SDHrPV~A~F~ 475 (521)
.|+||....- .++..+.. .+...|||.||.+.|.
T Consensus 430 IDyIlvS~~l~~~v~~~~I~~~~~~SDH~PV~~~l~ 465 (467)
T 2j63_A 430 LDYFVVSSRLASYVVDCFPMPTVMGSDHCPFQMWMR 465 (467)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEE
T ss_pred eEEEEEcHHHHcceeEEEECCCCCCCCcccEEEEEE
Confidence 8999986531 12333332 3567999999999885
No 23
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=97.22 E-value=8.1e-05 Score=69.74 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=24.5
Q ss_pred ccceeecCC-CeeEeeecc-CccCCCCCCCcceeEEEE
Q 009969 442 CDRILSYGK-GMRLLNYRR-NEIKMSDHRPVTATYMAE 477 (521)
Q Consensus 442 CDRIL~~~~-~i~~l~Y~s-~el~~SDHrPV~A~F~v~ 477 (521)
.|+||.... ..++..+.. .+...|||.||.+.|.+.
T Consensus 220 ID~i~~s~~~~~~~~~~~v~~~~~~SDH~pv~~~l~~~ 257 (259)
T 2jc5_A 220 IDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVVEYDYA 257 (259)
T ss_dssp CEEEEECHHHHTTEEEEEECCSSCCSSBCCEEEEESCC
T ss_pred EEEEEECHHHHhHHhheeecCCCCCCCcccEEEEEecc
Confidence 899998742 111334443 357899999999998643
No 24
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=97.12 E-value=0.00029 Score=69.78 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=31.4
Q ss_pred EEEEEEeecCCCCCCC-cChhHHhHHHHHHHHhcCCCCCcCCCCCCccCccceEEEeCcccccc
Q 009969 307 TLFCFVCAHLTSGEKD-GDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 369 (521)
Q Consensus 307 t~~~FVn~HLaA~~~~-~~~~~Rn~d~~~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNYRI 369 (521)
..|.++|+|+++.... .....|.+.+..|.+.+.- +.....+|++||||-..
T Consensus 163 ~~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~~-----------~~~~~pvIl~GDFN~~~ 215 (318)
T 1hd7_A 163 DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKG-----------LASRKPLVLCGDLNVAH 215 (318)
T ss_dssp SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHH-----------HHHHSCEEEEEECSCCC
T ss_pred CCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHHh-----------cccCCCEEEEeeCCCCC
Confidence 4689999999876532 1123466666666543210 00114599999999643
No 25
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.98 E-value=0.00016 Score=80.59 Aligned_cols=74 Identities=15% Similarity=0.039 Sum_probs=0.0
Q ss_pred CCEEEEEEeecCCCCCCCcChhHHhHHHHHHHHhcC-CCCCcCCCCCCccCccceEEEeCcccccccCChHHHHHHHhhh
Q 009969 305 HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH-FRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKK 383 (521)
Q Consensus 305 ~~t~~~FVn~HLaA~~~~~~~~~Rn~d~~~I~rr~~-F~~~~~~~~p~~I~d~D~vfw~GDLNYRI~l~~~ev~~lI~~~ 383 (521)
.+..|+++|+||.++.... ..|..+...|++.+. +...........-.....+|++||||- .+.+.+.+++..+
T Consensus 545 ~g~~l~V~ntHL~~~p~~~--~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs---~P~s~~~~~l~~~ 619 (727)
T 4b8c_D 545 SGDTIWAVTTHLHWDPKFN--DVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNS---YINSAVYELINTG 619 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEEeccccCCCCC--chHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCC---CCCCcceEeeecC
Confidence 3678999999999864322 346666666655432 100000000000011235999999997 4455555555444
No 26
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=96.75 E-value=0.0012 Score=62.84 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=22.7
Q ss_pred ccceeecCCCe-eEeeecc-CccCCCCCCCcceeEE
Q 009969 442 CDRILSYGKGM-RLLNYRR-NEIKMSDHRPVTATYM 475 (521)
Q Consensus 442 CDRIL~~~~~i-~~l~Y~s-~el~~SDHrPV~A~F~ 475 (521)
.|+||....-. ++..... .+...|||.||.+.+.
T Consensus 221 ID~il~s~~~~~~~~~~~i~~~~~~SDH~Pv~~~~~ 256 (265)
T 3g91_A 221 LDYFFVNEEFKGKVKRSWILSDVMGSDHCPIGLEIE 256 (265)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEE
T ss_pred EEEEEECHHHHhhhcEEEEeCCCCCCCcceEEEEhh
Confidence 89999865321 2223332 3467899999999885
No 27
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=96.55 E-value=0.004 Score=58.27 Aligned_cols=34 Identities=29% Similarity=0.294 Sum_probs=21.5
Q ss_pred ccceeecCC-CeeEeeecc-C----ccCCCCCCCcceeEE
Q 009969 442 CDRILSYGK-GMRLLNYRR-N----EIKMSDHRPVTATYM 475 (521)
Q Consensus 442 CDRIL~~~~-~i~~l~Y~s-~----el~~SDHrPV~A~F~ 475 (521)
.|+||.... ..++..+.. . ....|||.||.+.|.
T Consensus 217 ID~i~~s~~~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~ 256 (257)
T 2voa_A 217 GDAILATPPLAERCVDCYADIKPRLAEKPSDHLPLVAVFD 256 (257)
T ss_dssp CEEEEECHHHHTTEEEEEECCHHHHSSSCCSBCCEEEEEC
T ss_pred EEEEEECHHHHhhhheeEeehhhccCCCCCCccCEEEEEe
Confidence 899998642 111223322 1 247899999999874
No 28
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=96.31 E-value=0.011 Score=61.86 Aligned_cols=74 Identities=14% Similarity=0.050 Sum_probs=45.3
Q ss_pred EEEEEEeecCCCCCCCcChhHHhHHHHHHHHhcC-CCCCcCCCCCC--ccCccceEEEeCcccccccCChHHHHHHHhhh
Q 009969 307 TLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH-FRSHSEIGFPK--SICDHERIIWLGDLNYRINLPYEKTRELISKK 383 (521)
Q Consensus 307 t~~~FVn~HLaA~~~~~~~~~Rn~d~~~I~rr~~-F~~~~~~~~p~--~I~d~D~vfw~GDLNYRI~l~~~ev~~lI~~~ 383 (521)
..|+++|+||..+... ...|..|...|++.+. |........+. .-...-.+|++||||- .+.+.+.+++.+|
T Consensus 195 ~~l~V~nTHL~~~p~~--~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs---~P~s~vy~~L~~G 269 (398)
T 3ngq_A 195 QLLIVANAHMHWDPEY--SDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNS---LPDSGVVEYLSNG 269 (398)
T ss_dssp CEEEEEEEECCCCTTC--HHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSC---CTTSHHHHHHHHT
T ss_pred cEEEEEEeCcCCCCCC--HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCC---CCCCHHHHHHhcC
Confidence 5699999999997543 3578888888876532 21000000000 0001235999999998 7778888888766
Q ss_pred ch
Q 009969 384 QW 385 (521)
Q Consensus 384 ~~ 385 (521)
..
T Consensus 270 ~v 271 (398)
T 3ngq_A 270 GV 271 (398)
T ss_dssp EE
T ss_pred CC
Confidence 43
No 29
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=96.02 E-value=0.017 Score=57.61 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=38.2
Q ss_pred CeeEEEEEEEECCEEEEEEeecCCCCCCCcChhHHhHHHHHHHHhcCCCCCcCCCCCCccCccceEEEeCcccc
Q 009969 294 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 367 (521)
Q Consensus 294 NKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~Rn~d~~~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNY 367 (521)
..|++.|+ +.+ +.|++.||.+.... .|.+....|... |.... ..|. ..+...+++||||-
T Consensus 121 ~R~~l~i~--i~g--~~f~s~Hl~~~~~~----ea~~~v~~I~~~--~~~~~--~~~~--~~~~~~ii~GDFN~ 180 (261)
T 1sr4_B 121 SRPAVGIR--IGT--DVFFTVHALATGGS----DAVSLIRNIFTT--FNSSS--SPPE--RRVYSWMVVGDFNR 180 (261)
T ss_dssp CCCEEEEE--ETT--EEEEEEECCTTTTT----THHHHHHHHHHH--HHC-----CGG--GGGCEEEEEEECSS
T ss_pred CcceEEEE--ECC--eEEEEeCCCCCCCc----hHHHHHHHHHHH--HHhcc--cCCc--ccCCcEEEEeeCCC
Confidence 67888884 777 99999999998522 466667777653 21100 0010 02246999999995
No 30
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=95.76 E-value=0.027 Score=54.12 Aligned_cols=56 Identities=16% Similarity=0.048 Sum_probs=35.4
Q ss_pred CeeEEEEEEEECCEEEEEEeecCCCCCCCcChhHHhHHHHHHHHhcCCCCCcCCCCCCccCccceEEEeCcccccc
Q 009969 294 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 369 (521)
Q Consensus 294 NKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~Rn~d~~~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNYRI 369 (521)
..|++.+.+.+ ..+.++|+|++.+... ..+.+.+..+.... . ...++++||||---
T Consensus 77 ~~~~~~i~i~~--~~i~i~svY~P~~~~~---~~~~~~l~~l~~~~--~-------------~~~~Ii~GDfN~~~ 132 (240)
T 2ei9_A 77 STHITVVHIGG--WDLYMVSAYFQYSDPI---DPYLHRLGNILDRL--R-------------GARVVICADTNAHS 132 (240)
T ss_dssp CSSEEEEEETT--TTEEEEEEECCTTSCS---HHHHHHHHHHHHHT--T-------------TSCEEEEEECCCCC
T ss_pred CCCEEEEEEee--ccEEEEEEEcCCCCch---hHHHHHHHHHHHhc--C-------------CCcEEEEEeccccc
Confidence 46776666543 4688999999988642 33444455554321 0 12499999999643
No 31
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=95.67 E-value=0.005 Score=63.73 Aligned_cols=29 Identities=34% Similarity=0.625 Sum_probs=25.1
Q ss_pred CCCcEEEEeceeeeecCCCcccccCCCCchhhHHHHHHHHhh
Q 009969 3 EPADIYVLGLQEIVPLTAGNIFGAEDSRPVSKWENIIRDTLN 44 (521)
Q Consensus 3 ~~~diyv~gfqeivplna~nv~~~~~~~p~~~w~~~i~~~ln 44 (521)
.++||||+|||||++. ...|+..|.++|.
T Consensus 56 ~~pDI~viGlQEi~~~-------------~~~W~~~l~~~L~ 84 (357)
T 2xsw_A 56 YAQDLYVIGVQEGCSD-------------RREWETRLQETLG 84 (357)
T ss_dssp SCCSEEEEEEESCCSC-------------HHHHHHHHHHHHC
T ss_pred CCCCEEEEEeeeccch-------------HHHHHHHHHHHhC
Confidence 5789999999999752 4799999999995
No 32
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=92.08 E-value=0.14 Score=48.74 Aligned_cols=103 Identities=15% Similarity=0.200 Sum_probs=52.5
Q ss_pred CCCeEEEEeeee----eeeeeeeeEecccccccceeEEeEEecc-c-Cc--ccCCeeEEEEEEEEC---CEEEEEEeecC
Q 009969 248 RSSYVRMVSKQM----VGIFLTIWVRRSLRRHIQNVRVSTVGVG-V-MG--FIGNKGSVSVSMSIH---QTLFCFVCAHL 316 (521)
Q Consensus 248 ~~~Yv~v~s~qm----vGi~L~Vfvr~~l~~~I~~v~~~~V~tG-~-~G--~~GNKGaV~vr~~i~---~t~~~FVn~HL 316 (521)
+..|..+.+... .|+...++.|++....+.. .....| . .| .+ ..+.+.+.|... +..|.++|+||
T Consensus 60 ~~~y~~v~~~~~~~~~~~~~~~~ly~~~~v~~~~~---~~~~~~~~~~~~~~~-~R~p~~~~~~~~~~~g~~~~vi~~Hl 135 (260)
T 2a40_B 60 PNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVLDT---YQYDDGCESCGNDSF-SREPAVVKFSSHSTKVKEFAIVALHS 135 (260)
T ss_dssp TTSCEEEECCCBCSSSCCBEEEEEECTTTCEEEEE---EECCTTSTTTHHHHC-SSCCEEEEEECTTSSSSEEEEEECCC
T ss_pred CCCcEEEEcccCCCCCCcEEEEEEEcCceeEecCc---eeccCCCcCCCCCce-eeCCEEEEEEeCCCCCceEEEEEecC
Confidence 556766665543 2355566666654322221 111111 0 00 11 255667777765 57899999999
Q ss_pred CCCCCCcChhHHhHHHHHHHHhcCCCCCcCCCCCCccCccceEEEeCcccccc
Q 009969 317 TSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 369 (521)
Q Consensus 317 aA~~~~~~~~~Rn~d~~~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNYRI 369 (521)
.+... .++.+.+..++..+. . ......+|++||||-.-
T Consensus 136 ~~~~~----~~q~~~l~~~~~~~~-~----------~~~~~~vil~GDfN~~~ 173 (260)
T 2a40_B 136 APSDA----VAEINSLYDVYLDVQ-Q----------KWHLNDVMLMGDFNADC 173 (260)
T ss_dssp CGGGH----HHHHHHHHHHHHHHH-H----------HHCCCCEEEEEECCCST
T ss_pred CCCCc----HHHHHHHHHHHHHHH-H----------hCCCCCEEEEecCCCCC
Confidence 97532 112223333332210 0 00123599999999853
No 33
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=71.12 E-value=3.9 Score=40.75 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=39.6
Q ss_pred CeeEEEEEEEECCEEEEEEeecCCCCCCCcChhHHhHHHHHHHHhcCCCCCcCCCCCCccCccceEEEeCcccc
Q 009969 294 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 367 (521)
Q Consensus 294 NKGaV~vr~~i~~t~~~FVn~HLaA~~~~~~~~~Rn~d~~~I~rr~~F~~~~~~~~p~~I~d~D~vfw~GDLNY 367 (521)
....++|++ . .+.|.+.|+.+..++ .|.+.+..|... |.. .|..+-..-..+++||||-
T Consensus 130 ~Rp~lgiri--~--~~~ff~tHa~a~~g~----da~a~v~~I~~~--~~~-----~~~~~~~~~pwii~GDFNr 188 (262)
T 2f1n_A 130 GRPLLGIRI--G--NDAFFTAHAIAMRNN----DAPALVEEVYNF--FRD-----SRDPVHQALNWMILGDFNR 188 (262)
T ss_dssp CCCEEEEEE--T--TEEEEEEECCSSSSC----SHHHHHHHHHHH--HHT-----CSSHHHHTCEEEEEEECSS
T ss_pred CCceEEEEE--C--CEEEEEEEecCCCCc----cHHHHHHHHHHH--Hhc-----CcccccCCCcEEEEecCCC
Confidence 788888887 3 388999999998432 488889988764 321 1110000024899999998
No 34
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=22.18 E-value=17 Score=39.06 Aligned_cols=15 Identities=47% Similarity=0.818 Sum_probs=12.9
Q ss_pred CccceEEEeCccccc
Q 009969 354 CDHERIIWLGDLNYR 368 (521)
Q Consensus 354 ~d~D~vfw~GDLNYR 368 (521)
..++.||+=||||||
T Consensus 375 ~~S~LVIFKGDLNYR 389 (471)
T 3pt1_A 375 QKSNLVIFKGDLNYR 389 (471)
T ss_dssp TTCSEEEEEHHHHHH
T ss_pred hhCcEEEEecchhhh
Confidence 357899999999995
No 35
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=21.32 E-value=23 Score=33.19 Aligned_cols=13 Identities=46% Similarity=0.756 Sum_probs=10.9
Q ss_pred cCCCCCCCcceeE
Q 009969 462 IKMSDHRPVTATY 474 (521)
Q Consensus 462 l~~SDHrPV~A~F 474 (521)
...|||.||.+.|
T Consensus 247 ~~~SDH~PV~~~l 259 (260)
T 2a40_B 247 LAISDHYPVEVTL 259 (260)
T ss_dssp HHHCSBCCEEEEB
T ss_pred hhcCCCCeEEEEe
Confidence 4579999999876
No 36
>2yka_B ORF57 protein, 52 kDa immediate-early phosphoprotein; RNA binding protein-transcription complex, RNA binding prote; NMR {Saimiriine herpesvirus 2}
Probab=26.68 E-value=20 Score=23.31 Aligned_cols=10 Identities=40% Similarity=0.863 Sum_probs=8.1
Q ss_pred CCCcccccee
Q 009969 437 RNPSWCDRIL 446 (521)
Q Consensus 437 R~PSWCDRIL 446 (521)
-.|+|.|||=
T Consensus 7 cr~nWs~RV~ 16 (26)
T 2yka_B 7 CKTSWADRVR 16 (26)
Confidence 4599999984
Done!