BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009970
(521 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7X659|VP35A_ARATH Vacuolar protein sorting-associated protein 35A OS=Arabidopsis
thaliana GN=VPS35A PE=2 SV=1
Length = 787
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/503 (82%), Positives = 462/503 (91%)
Query: 1 MMVDGVEDEEKWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKY 60
M+ DG EDEEKWLAAG A +QNAFYM RA+DSNNL+DALKYSAQMLSELRTSKLSP KY
Sbjct: 1 MIADGSEDEEKWLAAGAAAFKQNAFYMQRAIDSNNLKDALKYSAQMLSELRTSKLSPHKY 60
Query: 61 YQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKE 120
Y LYMRAFDELRKLE+FF EETRRGCS+I+LYELVQHAGNILPRLYLLCT GSVYIK+KE
Sbjct: 61 YDLYMRAFDELRKLEIFFMEETRRGCSVIELYELVQHAGNILPRLYLLCTAGSVYIKTKE 120
Query: 121 APAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVL 180
APAK++LKDLVEMCRGIQHP+RGLFLRSYL+QISRDKLPDIGSEYEGDADTV DA+EFVL
Sbjct: 121 APAKEILKDLVEMCRGIQHPLRGLFLRSYLAQISRDKLPDIGSEYEGDADTVIDAVEFVL 180
Query: 181 QNFTEMNKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLP 240
NFTEMNKLWVRMQHQGPAREK++REKER ELRDLVGKNLHVLSQ+EGVDLD Y++TVLP
Sbjct: 181 LNFTEMNKLWVRMQHQGPAREKERREKERGELRDLVGKNLHVLSQLEGVDLDMYRDTVLP 240
Query: 241 RVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLME 300
RVLEQ+VNC+DEIAQ YL+DCIIQVFPDEYHLQTL++LLGA PQLQ SVDI TVLSRLME
Sbjct: 241 RVLEQIVNCRDEIAQYYLIDCIIQVFPDEYHLQTLDVLLGACPQLQASVDIMTVLSRLME 300
Query: 301 RLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHP 360
RLSNYAA + EVLP FLQVEAFSKLNNAIGKVIEAQ DMPIL AVTLYSSLL FTLHVHP
Sbjct: 301 RLSNYAALNAEVLPYFLQVEAFSKLNNAIGKVIEAQEDMPILSAVTLYSSLLKFTLHVHP 360
Query: 361 DRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVME 420
DRLDYADQVLG+CVK+LSG+GK++D RATK++V+LLSAPL+KYND+VT LKL+NYP V+E
Sbjct: 361 DRLDYADQVLGSCVKQLSGKGKIDDTRATKELVSLLSAPLEKYNDVVTALKLTNYPLVVE 420
Query: 421 YVDSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKE 480
Y+D+ET ++MA VI++SIMKNNT I+TA+KV ALFELIKG+I DLD +VDEDDF+E
Sbjct: 421 YLDTETKRIMATVIVRSIMKNNTLITTAEKVEALFELIKGIINDLDEPQGLEVDEDDFQE 480
Query: 481 EQNSVARLIQMLQNDDTEEMFKV 503
EQNSVA LI ML NDD EEMFK+
Sbjct: 481 EQNSVALLIHMLYNDDPEEMFKI 503
>sp|F4I0P8|VP35B_ARATH Vacuolar protein sorting-associated protein 35B OS=Arabidopsis
thaliana GN=VPS35B PE=1 SV=1
Length = 790
Score = 809 bits (2089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/499 (77%), Positives = 447/499 (89%)
Query: 5 GVEDEEKWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLY 64
GVEDE+KWLA GIAG+Q NAF+MHRALD+NNLR+ LKYSA MLSELRTSKLSPQKYY LY
Sbjct: 6 GVEDEDKWLAEGIAGIQHNAFFMHRALDANNLREVLKYSALMLSELRTSKLSPQKYYDLY 65
Query: 65 MRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAK 124
MRAFD+LR+LE+FFK+E+R G ++DLYELVQHAGNILPR+YLLCTVGSVYIKSK+AP+K
Sbjct: 66 MRAFDQLRQLEIFFKDESRHGLPVVDLYELVQHAGNILPRMYLLCTVGSVYIKSKQAPSK 125
Query: 125 DVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFT 184
DVLKDLVEMCRG+QHP+RGLFLRSYL+Q+SRDKLP+IGS+YEGDA+TV DA+EFVLQNFT
Sbjct: 126 DVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPEIGSDYEGDANTVMDAVEFVLQNFT 185
Query: 185 EMNKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLE 244
EMNKLWVR+QHQGP ++K+EKER+ELRDLVGKNLHVL QIEGVDL+ YKETVLPRVLE
Sbjct: 186 EMNKLWVRIQHQGPGTVREKQEKERNELRDLVGKNLHVLGQIEGVDLEMYKETVLPRVLE 245
Query: 245 QVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSN 304
QVVNCKD++AQ YLM+CIIQVFPDEYHLQTLE LL A QL P+VD K VL++LM+RLSN
Sbjct: 246 QVVNCKDKLAQYYLMECIIQVFPDEYHLQTLETLLAACTQLMPTVDTKIVLTQLMDRLSN 305
Query: 305 YAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLD 364
YAASS +VL EFLQVEAF+KL+NAIGKVI+ Q +MPI+GA+TL+ SLLTFTL VHPDRLD
Sbjct: 306 YAASSPDVLHEFLQVEAFAKLSNAIGKVIDTQLEMPIVGAMTLFVSLLTFTLRVHPDRLD 365
Query: 365 YADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYVDS 424
Y DQVLGACV KLS KLED RA KQ+VALLSAPL+KY+DIVT L LSNYP VM+++D
Sbjct: 366 YVDQVLGACVVKLSSVPKLEDARAMKQVVALLSAPLEKYSDIVTALTLSNYPRVMDHLDD 425
Query: 425 ETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNS 484
TNKVMAM+IIQSIMK ++ ISTADKV LFELIKGLI+DLD +++DE+DF+EEQNS
Sbjct: 426 GTNKVMAMLIIQSIMKTDSCISTADKVEVLFELIKGLIKDLDETNAEELDEEDFQEEQNS 485
Query: 485 VARLIQMLQNDDTEEMFKV 503
VARLI ML N++ EEM K+
Sbjct: 486 VARLIHMLDNEEPEEMLKI 504
>sp|A8R7K9|VP35C_ARATH Vacuolar protein sorting-associated protein 35C OS=Arabidopsis
thaliana GN=VPS35C PE=2 SV=1
Length = 790
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/497 (75%), Positives = 438/497 (88%)
Query: 7 EDEEKWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMR 66
+D+EKWLAA IA ++QNAFYM RA+DSNNL+DALK+SAQMLSELRTSKLSP KYY+LYMR
Sbjct: 4 DDDEKWLAAAIAAVKQNAFYMQRAIDSNNLKDALKFSAQMLSELRTSKLSPHKYYELYMR 63
Query: 67 AFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDV 126
F+EL LE+FFKEET RGCSI +LYELVQHAGNILPRLYLLCT+GSVYIKSK+ A D+
Sbjct: 64 VFNELGTLEIFFKEETGRGCSIAELYELVQHAGNILPRLYLLCTIGSVYIKSKDVTATDI 123
Query: 127 LKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFTEM 186
LKDLVEMCR +QHP+RGLFLRSYL+Q++RDKLP IGS+ EGD D +A+EFVLQNFTEM
Sbjct: 124 LKDLVEMCRAVQHPLRGLFLRSYLAQVTRDKLPSIGSDLEGDGDAHMNALEFVLQNFTEM 183
Query: 187 NKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQV 246
NKLWVRMQHQGP+REK+KREKER+ELRDLVGKNLHVLSQ+EGVDL Y++TVLPR+LEQV
Sbjct: 184 NKLWVRMQHQGPSREKEKREKERNELRDLVGKNLHVLSQLEGVDLGIYRDTVLPRILEQV 243
Query: 247 VNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYA 306
VNCKDE+AQCYLMDCIIQVFPD++HLQTL++LLGA PQLQPSVDIKTVLS LMERLSNYA
Sbjct: 244 VNCKDELAQCYLMDCIIQVFPDDFHLQTLDVLLGACPQLQPSVDIKTVLSGLMERLSNYA 303
Query: 307 ASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYA 366
ASS E LP FLQVEAFSKLN AIGKV+EAQAD+P +VTLY LL FTLHV+ DRLDY
Sbjct: 304 ASSVEALPNFLQVEAFSKLNYAIGKVVEAQADLPAAASVTLYLFLLKFTLHVYSDRLDYV 363
Query: 367 DQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYVDSET 426
DQVLG+CV +LS GKL D++A KQIVA LSAPL+KYN++VT+LKL+NYP VMEY+D ET
Sbjct: 364 DQVLGSCVTQLSATGKLCDDKAAKQIVAFLSAPLEKYNNVVTILKLTNYPLVMEYLDRET 423
Query: 427 NKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSVA 486
NK MA++++QS+ KNNT I+TAD+V ALFEL KGL++D DG D++DE+DF+EEQN VA
Sbjct: 424 NKAMAIILVQSVFKNNTHIATADEVDALFELAKGLMKDFDGTIDDEIDEEDFQEEQNLVA 483
Query: 487 RLIQMLQNDDTEEMFKV 503
RL+ L DD EEM K+
Sbjct: 484 RLVNKLYIDDPEEMSKI 500
>sp|Q54C24|VPS35_DICDI Vacuolar sorting protein 35 OS=Dictyostelium discoideum GN=vps35
PE=3 SV=1
Length = 781
Score = 464 bits (1195), Expect = e-130, Method: Compositional matrix adjust.
Identities = 240/500 (48%), Positives = 352/500 (70%), Gaps = 8/500 (1%)
Query: 7 EDEEKWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMR 66
E++ K+ + +M +LD++ L DALKY++ +++ELRTS LSP+ YY LY+
Sbjct: 17 EEQAKFFEEAKNNVMIQGHHMKLSLDNSKLMDALKYASNIINELRTSLLSPKSYYALYLV 76
Query: 67 AFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDV 126
AFD L+ L + EE + G +I+LYE+VQHAGN+LPRLYLL TVGSVYIK+K+APAKDV
Sbjct: 77 AFDYLQYLNTYLYEE-KHGKKMIELYEVVQHAGNVLPRLYLLITVGSVYIKTKQAPAKDV 135
Query: 127 LKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFTEM 186
LKDL+EMCRG+QHP RGLFLR YLS++++DKLPDI S E TV D+++F++QNFTE
Sbjct: 136 LKDLIEMCRGVQHPTRGLFLRHYLSEVTKDKLPDIDSSVENG--TVMDSIDFIIQNFTET 193
Query: 187 NKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQV 246
NKLWVRMQHQ P +++++RE ER ELR LVGKNL L+Q++GVD TY E VLP+V+EQ+
Sbjct: 194 NKLWVRMQHQAPTKDRERRENERLELRLLVGKNLSRLAQLDGVDQKTYSEVVLPKVVEQI 253
Query: 247 VNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYA 306
+NCKD+IAQ YLM+ +IQVFPDE+HL TL+I+L QLQ VD+KT+++ L++RL+N+A
Sbjct: 254 INCKDKIAQQYLMEILIQVFPDEFHLATLDIILQTCAQLQSGVDVKTIIASLIDRLANFA 313
Query: 307 ASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYA 366
+ +++P+ ++ F N + ++I+A+ +M + + L+ SLL TL +P D A
Sbjct: 314 TRNADLVPD--NIKIFDIFFNNVKEIIQARPNMELQDILGLHVSLLNLTLKCYPTNKDNA 371
Query: 367 DQVLGACVKKLSGEGKLEDNRAT--KQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYVDS 424
++VLG C + + K + N+ T KQI+ LL PLD + +++ VLKLSNY ++ +
Sbjct: 372 NEVLGLCQSIIVNKAKEDINKPTCVKQIIQLLQIPLDVFKNVLVVLKLSNYQPLISCLSY 431
Query: 425 ETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRD-LDGAAHDQVDEDDFKEEQN 483
K +++ I+ + + N+T I + V L E I+ LI+D D D +D++DF+EEQN
Sbjct: 432 NNRKKVSLDIVNNTINNSTIIEEPEAVNNLLETIQTLIKDEQDQPDMDDIDKEDFQEEQN 491
Query: 484 SVARLIQMLQNDDTEEMFKV 503
VA LI + ++D E++FK+
Sbjct: 492 KVASLIHLFDSEDPEKLFKI 511
>sp|Q9EQH3|VPS35_MOUSE Vacuolar protein sorting-associated protein 35 OS=Mus musculus
GN=Vps35 PE=1 SV=1
Length = 796
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 235/503 (46%), Positives = 340/503 (67%), Gaps = 13/503 (2%)
Query: 7 EDEEKWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMR 66
+++EK L I ++ +F M R LD N L DALK+++ ML ELRTS LSP+ YY+LYM
Sbjct: 10 DEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMA 69
Query: 67 AFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDV 126
DEL LE++ +E +G + DLYELVQ+AGNI+PRLYLL TVG VY+KS KD+
Sbjct: 70 ISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVKSFPQSRKDI 129
Query: 127 LKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIG----SEYEGDADTVNDAMEFVLQN 182
LKDLVEMCRG+QHP+RGLFLR+YL Q +R+ LPD G E GD ++D+M+FVL N
Sbjct: 130 LKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDEGEPTDEETTGD---ISDSMDFVLLN 186
Query: 183 FTEMNKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRV 242
F EMNKLWVRMQHQG +R+++KRE+ER ELR LVG NL LSQ+EGV+++ YK+ VL +
Sbjct: 187 FAEMNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVERYKQIVLTGI 246
Query: 243 LEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERL 302
LEQVVNC+D +AQ YLM+CIIQVFPDE+HLQTL L A +L +V++K ++ L++RL
Sbjct: 247 LEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIIIALIDRL 306
Query: 303 SNYAA-SSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPD 361
+ +A +P +++ F + + VI+++ DMP V+L SL+ + +PD
Sbjct: 307 ALFAHREDGPGIPA--EIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMKCYPD 364
Query: 362 RLDYADQVLGACVK---KLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSV 418
R+DY D+VL V+ KL+ E + +K++ LL P+D YN+I+TVLKL ++ +
Sbjct: 365 RVDYVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLKLKHFHPL 424
Query: 419 MEYVDSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDF 478
EY D E+ K M+ ++ +++ NT+I + D+V ++ L+ LI+D + D +DF
Sbjct: 425 FEYFDYESRKSMSCYVLSNVLDYNTEIVSQDQVDSIMNLVSTLIQDQPDQPVEDPDPEDF 484
Query: 479 KEEQNSVARLIQMLQNDDTEEMF 501
+EQ+ V R I +L++DD ++ +
Sbjct: 485 ADEQSLVGRFIHLLRSDDPDQQY 507
>sp|Q2HJG5|VPS35_BOVIN Vacuolar protein sorting-associated protein 35 OS=Bos taurus
GN=VPS35 PE=2 SV=1
Length = 796
Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust.
Identities = 234/503 (46%), Positives = 340/503 (67%), Gaps = 13/503 (2%)
Query: 7 EDEEKWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMR 66
+++EK L I ++ +F M R LD N L DALK+++ ML ELRTS LSP+ YY+LYM
Sbjct: 10 DEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMA 69
Query: 67 AFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDV 126
DEL LE++ +E +G + DLYELVQ+AGNI+PRLYLL TVG VY+KS KD+
Sbjct: 70 ISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVKSFPQSRKDI 129
Query: 127 LKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIG----SEYEGDADTVNDAMEFVLQN 182
LKDLVEMCRG+QHP+RGLFLR+YL Q +R+ LPD G E GD ++D+M+FVL N
Sbjct: 130 LKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDEGEPTDEETTGD---ISDSMDFVLLN 186
Query: 183 FTEMNKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRV 242
F EMNKLWVRMQHQG +R+++KRE+ER ELR LVG NL LSQ+EGV+++ YK+ VL +
Sbjct: 187 FAEMNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVERYKQIVLTGI 246
Query: 243 LEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERL 302
LEQVVNC+D +AQ YLM+CIIQVFPDE+HLQTL L A +L +V++K ++ L++RL
Sbjct: 247 LEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIIIALIDRL 306
Query: 303 SNYAA-SSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPD 361
+ +A +P ++ F + + VI+++ DMP V+L SL+ + +PD
Sbjct: 307 ALFAHREDGPGIPT--DIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMKCYPD 364
Query: 362 RLDYADQVLGACVK---KLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSV 418
R+DY D+VL V+ KL+ E + +K++ LL P+D YN+I+TVLKL ++ +
Sbjct: 365 RVDYVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLKLKHFHPL 424
Query: 419 MEYVDSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDF 478
EY D E+ K M+ ++ +++ NT+I + D+V ++ L+ LI+D ++ D +DF
Sbjct: 425 FEYFDYESRKSMSCYVLSNVLDYNTEIVSQDQVDSIMNLVSTLIQDQPDQPVEEPDPEDF 484
Query: 479 KEEQNSVARLIQMLQNDDTEEMF 501
+EQ+ V R I +L+++D ++ +
Sbjct: 485 ADEQSLVGRFIHLLRSEDPDQQY 507
>sp|Q96QK1|VPS35_HUMAN Vacuolar protein sorting-associated protein 35 OS=Homo sapiens
GN=VPS35 PE=1 SV=2
Length = 796
Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust.
Identities = 234/503 (46%), Positives = 339/503 (67%), Gaps = 13/503 (2%)
Query: 7 EDEEKWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMR 66
+++EK L I ++ +F M R LD N L DALK+++ ML ELRTS LSP+ YY+LYM
Sbjct: 10 DEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMA 69
Query: 67 AFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDV 126
DEL LE++ +E +G + DLYELVQ+AGNI+PRLYLL TVG VY+KS KD+
Sbjct: 70 ISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVKSFPQSRKDI 129
Query: 127 LKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIG----SEYEGDADTVNDAMEFVLQN 182
LKDLVEMCRG+QHP+RGLFLR+YL Q +R+ LPD G E GD ++D+M+FVL N
Sbjct: 130 LKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDEGEPTDEETTGD---ISDSMDFVLLN 186
Query: 183 FTEMNKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRV 242
F EMNKLWVRMQHQG +R+++KRE+ER ELR LVG NL LSQ+EGV+++ YK+ VL +
Sbjct: 187 FAEMNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVERYKQIVLTGI 246
Query: 243 LEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERL 302
LEQVVNC+D +AQ YLM+CIIQVFPDE+HLQTL L A +L +V++K ++ L++RL
Sbjct: 247 LEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIIIALIDRL 306
Query: 303 SNYAA-SSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPD 361
+ +A +P ++ F + + VI+++ DMP V+L SL+ + +PD
Sbjct: 307 ALFAHREDGPGIPA--DIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMKCYPD 364
Query: 362 RLDYADQVLGACVK---KLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSV 418
R+DY D+VL V+ KL+ E + +K++ LL P+D YN+I+TVLKL ++ +
Sbjct: 365 RVDYVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLKLKHFHPL 424
Query: 419 MEYVDSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDF 478
EY D E+ K M+ ++ +++ NT+I + D+V ++ L+ LI+D + D +DF
Sbjct: 425 FEYFDYESRKSMSCYVLSNVLDYNTEIVSQDQVDSIMNLVSTLIQDQPDQPVEDPDPEDF 484
Query: 479 KEEQNSVARLIQMLQNDDTEEMF 501
+EQ+ V R I +L+++D ++ +
Sbjct: 485 ADEQSLVGRFIHLLRSEDPDQQY 507
>sp|O74552|VPS35_SCHPO Vacuolar protein sorting-associated protein 35
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps35 PE=1 SV=2
Length = 836
Score = 296 bits (759), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 185/524 (35%), Positives = 291/524 (55%), Gaps = 60/524 (11%)
Query: 21 QQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKE 80
+Q++ M R L + L DA + + L E+R S L+P++YY+LYM + LR L E
Sbjct: 23 KQSSRLMQRNLQTGRLMDAFRNCSISLVEMRNSALTPKQYYELYMFNMESLRLLGGTLLE 82
Query: 81 ETRRGC-SIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQH 139
G +++DLYELVQ+AG+I+PRLYL+ TVGS Y+++ A ++++ DL++MCRG+QH
Sbjct: 83 THLNGTHNLMDLYELVQYAGSIVPRLYLMITVGSAYLETPNALVREIMNDLLDMCRGVQH 142
Query: 140 PVRGLFLRSYLSQISRDKLPDIGSEYEGDAD---TVNDAMEFVLQNFTEMNKLWVRMQHQ 196
P+RGLFLR YL +R LP +GSE E DA TV D+++F++ NFTEMNKLWVR+QH
Sbjct: 143 PLRGLFLRHYLLTQTRKGLP-LGSEDEEDASRKGTVLDSVKFLVINFTEMNKLWVRIQHL 201
Query: 197 GPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQC 256
GP +E KR +ER+EL+ LVG NL LSQ+ +D+DTY++ VLP ++EQ++ C+D +AQ
Sbjct: 202 GPIKEFSKRTQERNELKVLVGLNLVRLSQL-NLDIDTYRDHVLPAIIEQIIECRDSLAQE 260
Query: 257 YLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNY------AASST 310
YL++ I Q F D HLQTL+ G +L PSV++ ++ ++ RL++Y + SS
Sbjct: 261 YLVEVICQAFSDNMHLQTLDTYFGTVIKLSPSVNVTQLVVAMLNRLTDYVQREYESDSSN 320
Query: 311 E--------------------------------VLPEFLQVEAFSKLNNAIGKVIEAQAD 338
E + PE+ E L + + +VI++++
Sbjct: 321 EDESETVTEKLGDIKINEEVQQKDEQECPGDKVIPPEYAIQEV---LWSHVVEVIQSRSG 377
Query: 339 MPILGAVTLYSSLLTFTLHVHPDRLDYADQVLG----ACVKKLSGEGKLEDNRATKQIVA 394
+P+ V++ SS+L F L +P + YAD+V + + S L + K + A
Sbjct: 378 LPLDCIVSILSSILNFFLRCYPYKPQYADRVFQYINEHIINQPSLRSALHERPLQKSLCA 437
Query: 395 LLSAPLDKYNDIVTVLKLSNYPSVMEYVDSETNKVMAMVIIQSIMKNNTQISTADKVGAL 454
+L PL + L+L N+ V D +A +I+Q I++ +S + L
Sbjct: 438 ILLLPLTYFPSFSYCLELQNFLPVFNAQDPNLRYDIARMIVQKIIEKGHSLSELTEAQEL 497
Query: 455 FELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQMLQNDDTE 498
+ +I ++ D + QN VA ++ L NDD +
Sbjct: 498 LGFVSVII--------EKKGVDSLDDLQN-VALMVHYLNNDDPQ 532
>sp|P34110|VPS35_YEAST Vacuolar protein sorting-associated protein 35 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS35 PE=1
SV=2
Length = 944
Score = 265 bits (678), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 149/373 (39%), Positives = 231/373 (61%), Gaps = 15/373 (4%)
Query: 16 GIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLE 75
IA ++Q M+R L + L ++L++++ ML+ELR LSP+KYY+LY+ FD L L
Sbjct: 10 AIAVIKQRTALMNRCLSQHKLMESLQHTSIMLTELRNPNLSPKKYYELYVIIFDSLTNLS 69
Query: 76 MFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCR 135
+ E + + DLYELVQ+ GN++PRLYL+ TVG+ Y+ EAP K++LKD++EMCR
Sbjct: 70 TYLIENHPQNHHLADLYELVQYTGNVVPRLYLMITVGTSYLTFNEAPKKEILKDMIEMCR 129
Query: 136 GIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFTEMNKLWVRMQH 195
G+Q+P+RGLFLR YLSQ +++ LP+ D + N +F++ NF EMNKLWVR+QH
Sbjct: 130 GVQNPIRGLFLRYYLSQRTKELLPE-------DDPSFNS--QFIMNNFIEMNKLWVRLQH 180
Query: 196 QGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQ 255
QGP RE++ R +ER EL+ LVG L LSQI + YK+ +LP +LEQV+ C+D ++Q
Sbjct: 181 QGPLRERETRTRERKELQILVGSQLVRLSQIIDDNFQMYKQDILPTILEQVIQCRDLVSQ 240
Query: 256 CYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPE 315
YL+D I QVF DE+HL+TL+ LL L P V I ++ L++RL++Y E P
Sbjct: 241 EYLLDVICQVFADEFHLKTLDTLLQTTLHLNPDVSINKIVLTLVDRLNDYVTRQLEDDPN 300
Query: 316 ------FLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQV 369
+L ++ F + + + + D+ + + L S++ +L +P+ D +++
Sbjct: 301 ATSTNAYLDMDVFGTFWDYLTVLNHERPDLSLQQFIPLVESVIVLSLKWYPNNFDNLNKL 360
Query: 370 LGACVKKLSGEGK 382
++K G+
Sbjct: 361 FELVLQKTKDYGQ 373
>sp|Q557H3|U505_DICDI UPF0505 protein OS=Dictyostelium discoideum GN=DDB_G0273473 PE=3
SV=1
Length = 987
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 25/209 (11%)
Query: 65 MRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVY--IKSK-EA 121
+++ E + E+ KE+ + C + + + +LPRL++ ++ Y I+
Sbjct: 280 LQSSKESKNHEILLKEQAKETCR--NWFYKIASIRELLPRLFVEISILKCYEFIQGDVNT 337
Query: 122 PAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQ 181
K V+ + EM RGI +P+ ++R+YL++ S D P EY+ +FV+Q
Sbjct: 338 EPKQVINRISEMIRGIGNPLVANYIRAYLTRRSFDLCP----EYK----------KFVIQ 383
Query: 182 NFTEMNKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPR 241
+ ++ + ++ ++ R L D +G L + L P
Sbjct: 384 LLKDF--VFTQKSYEKSKYLENTLSMYRITLTDYMGLYSPSLEWL----LQCLAHKATPE 437
Query: 242 VLEQVVNCKDEIAQCYLMDCIIQVFPDEY 270
LE+V+ E L++ II FP EY
Sbjct: 438 TLEEVLELFRESKNSLLLNHIISSFPPEY 466
>sp|F1MCA7|LRRC7_BOVIN Leucine-rich repeat-containing protein 7 OS=Bos taurus GN=LRRC7
PE=3 SV=3
Length = 1536
Score = 36.2 bits (82), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 19/105 (18%)
Query: 172 VNDA-MEFVLQNFTEMNKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVD 230
+NDA +EF+ NF + KL + E + L+ L K++H L+Q+E +D
Sbjct: 145 LNDAFLEFLPANFGRLAKLRIL-------------ELRENHLKTLP-KSMHKLAQLERLD 190
Query: 231 LDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTL 275
L + + LP VL+Q+ N ++ ++ + +QV P + L+ L
Sbjct: 191 LGNNEFSELPEVLDQIQNLRE----LWMDNNALQVLPGVWKLKML 231
>sp|Q2XSC4|LABER_LAVAN Exo-alpha-bergamotene synthase OS=Lavandula angustifolia PE=1 SV=1
Length = 538
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 234 YKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKT 293
Y+ET LP E++ + +A+C+L + PD +H + EI+ + + DI
Sbjct: 241 YEETGLP---EKMSFARHRLAECFLWS--LGFIPDPHHGYSREIMTKIAVLITITDDIYD 295
Query: 294 V------LSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNA 328
+ L E + +S ++LPE++Q+ + N+A
Sbjct: 296 IYGALEELQEFTEAFERWDINSLDLLPEYMQICFLAIFNSA 336
>sp|Q9PJC9|PQQCL_CHLMU PqqC-like protein OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=TC_0900 PE=3 SV=1
Length = 236
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 23/136 (16%)
Query: 400 LDKYNDIVTVLKLSNYPSVMEYVDSETNKVMAMVIIQSIMKNNTQISTADKVGALF---- 455
+D + V L +S+ E +++ A + + M+ T S A V AL+
Sbjct: 95 IDLWKQFVFALGVSS-----EELEAHEPSEAAKAKVATFMRWCTGDSLAAGVAALYSYES 149
Query: 456 -------ELIKGLIRDL------DGAAHDQVDEDDFKEEQNSVARLIQMLQNDDTEEMFK 502
E I+GLI D A + +E D + + A LI+ML DD++++ +
Sbjct: 150 QIPCVAKEKIRGLIEYFGFSNPEDYAYFTEHEEADVRHAREEKA-LIEMLSRDDSDKVLE 208
Query: 503 VSERVILSLYDYLISL 518
S V SLY +L S
Sbjct: 209 ASREVTQSLYGFLDSF 224
>sp|P70587|LRRC7_RAT Leucine-rich repeat-containing protein 7 OS=Rattus norvegicus
GN=Lrrc7 PE=1 SV=2
Length = 1490
Score = 33.1 bits (74), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 19/97 (19%)
Query: 172 VNDA-MEFVLQNFTEMNKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVD 230
+NDA +EF+ NF + KL + E + L+ L K++H L+Q+E +D
Sbjct: 145 LNDAFLEFLPANFGRLVKLRIL-------------ELRENHLKTLP-KSMHKLAQLERLD 190
Query: 231 LDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFP 267
L + + LP VL+Q+ N ++ ++ + +QV P
Sbjct: 191 LGNNEFSELPEVLDQIQNLRE----LWMDNNALQVLP 223
>sp|Q80TE7|LRRC7_MOUSE Leucine-rich repeat-containing protein 7 OS=Mus musculus GN=Lrrc7
PE=1 SV=2
Length = 1490
Score = 33.1 bits (74), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 19/97 (19%)
Query: 172 VNDA-MEFVLQNFTEMNKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVD 230
+NDA +EF+ NF + KL + E + L+ L K++H L+Q+E +D
Sbjct: 145 LNDAFLEFLPANFGRLVKLRIL-------------ELRENHLKTLP-KSMHKLAQLERLD 190
Query: 231 LDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFP 267
L + + LP VL+Q+ N ++ ++ + +QV P
Sbjct: 191 LGNNEFSELPEVLDQIQNLRE----LWMDNNALQVLP 223
>sp|Q3KR97|BI2L1_RAT Brain-specific angiogenesis inhibitor 1-associated protein 2-like
protein 1 OS=Rattus norvegicus GN=Baiap2l1 PE=2 SV=1
Length = 516
Score = 32.3 bits (72), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 22/179 (12%)
Query: 194 QHQGPAREK-DKREKERSELRDLV-----GKNL--HVLSQIEGVDLDTYKETVLPRVLEQ 245
++Q R K D EK ++EL+ + G+N + +IE V+ T +++ + + +
Sbjct: 121 RYQAEHRNKLDSLEKSQAELKKIRRKSQGGRNALKYEHKEIEYVETVTSRQSEIQKFIAD 180
Query: 246 VVNCKDEIAQ-----CYLMD--CIIQVFPDEYHLQTLEILLGAFPQLQPS-VDIKTVLSR 297
CK+ + + C+L+D C YHLQ+ E+L P+ Q + D V +
Sbjct: 181 --GCKEALLEEKRRFCFLVDKHCSFASHIHRYHLQSAELLNSKLPRWQETCCDATKVPEK 238
Query: 298 LMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGK----VIEAQADMPILGAVTLYSSLL 352
+M + + + Q ++ + IGK + + MP +V Y+S L
Sbjct: 239 IMNMIEEIKTPISTPVSGTPQPSPMTERSKMIGKDYDTLSKYSPKMPPAPSVKAYTSPL 297
>sp|Q14690|RRP5_HUMAN Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3
Length = 1871
Score = 32.3 bits (72), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 299 MERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHV 358
ME++ Y A T V F K N + K +E + I G + L + L+F +
Sbjct: 1140 MEKIKQYQAGQT--------VTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLK 1191
Query: 359 HPDRLDYADQVLGACV 374
HPD+ Q L A V
Sbjct: 1192 HPDKKFRVGQALRATV 1207
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,888,647
Number of Sequences: 539616
Number of extensions: 7509368
Number of successful extensions: 22740
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 22702
Number of HSP's gapped (non-prelim): 42
length of query: 521
length of database: 191,569,459
effective HSP length: 122
effective length of query: 399
effective length of database: 125,736,307
effective search space: 50168786493
effective search space used: 50168786493
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)