Query 009970
Match_columns 521
No_of_seqs 113 out of 197
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 19:29:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03635 Vps35: Vacuolar prote 100.0 7E-172 2E-176 1437.7 2.5 502 11-513 1-520 (762)
2 KOG1107 Membrane coat complex 100.0 3E-153 6E-158 1226.1 40.6 487 27-513 1-489 (760)
3 KOG3682 Predicted membrane pro 99.9 9.3E-21 2E-25 204.5 34.4 427 16-512 142-643 (930)
4 KOG1107 Membrane coat complex 99.6 1.9E-15 4.1E-20 164.7 9.5 297 36-419 148-447 (760)
5 PF14677 FANCI_S3: FANCI solen 63.8 70 0.0015 32.0 10.5 109 259-396 106-218 (219)
6 PF14223 UBN2: gag-polypeptide 53.0 96 0.0021 27.0 8.5 53 218-271 30-82 (119)
7 PF03000 NPH3: NPH3 family; I 48.7 2.9E+02 0.0064 28.4 12.3 57 333-397 193-249 (258)
8 KOG2561 Adaptor protein NUB1, 42.3 45 0.00098 36.9 5.4 23 134-156 255-277 (568)
9 KOG0889 Histone acetyltransfer 35.9 7.1E+02 0.015 34.7 15.1 228 259-516 1958-2201(3550)
10 cd02685 MIT_C MIT_C; domain fo 35.6 33 0.00072 32.4 2.8 61 442-520 26-89 (148)
11 PF08767 CRM1_C: CRM1 C termin 34.9 3E+02 0.0064 28.9 10.1 112 341-454 89-207 (319)
12 KOG1410 Nuclear transport rece 31.6 2.8E+02 0.0061 32.7 9.6 99 318-421 253-353 (1082)
13 PF08673 RsbU_N: Phosphoserine 30.7 2.1E+02 0.0045 24.1 6.6 55 319-379 18-72 (77)
14 COG2147 RPL19A Ribosomal prote 27.6 1.1E+02 0.0024 28.9 4.8 46 36-81 95-145 (150)
15 PF11864 DUF3384: Domain of un 22.4 1.1E+03 0.023 26.0 12.7 97 415-517 236-336 (464)
16 TIGR00208 fliS flagellar biosy 22.1 4.6E+02 0.01 23.7 7.7 54 4-62 19-75 (124)
17 cd01418 Ribosomal_L19e_A Ribos 21.8 1.7E+02 0.0037 27.7 4.9 43 39-81 95-142 (145)
18 PF12354 Internalin_N: Bacteri 21.8 39 0.00085 26.8 0.6 9 262-270 42-50 (57)
19 PF13374 TPR_10: Tetratricopep 21.6 1.1E+02 0.0023 20.7 2.8 30 108-137 5-35 (42)
20 PF07540 NOC3p: Nucleolar comp 21.4 1.5E+02 0.0033 25.9 4.2 47 113-161 13-60 (95)
21 PRK05685 fliS flagellar protei 20.9 6.4E+02 0.014 22.9 10.2 54 4-62 23-79 (132)
22 PF13035 DUF3896: Protein of u 20.6 66 0.0014 25.4 1.6 15 173-188 42-56 (61)
23 PTZ00436 60S ribosomal protein 20.5 1.7E+02 0.0036 31.0 4.9 45 37-81 96-145 (357)
No 1
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=100.00 E-value=7.3e-172 Score=1437.69 Aligned_cols=502 Identities=55% Similarity=0.888 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHhccccHHHHHHHHHHHHHhhhcCCCCCchhhHHHHHHHhhhHHHHHHHHHHhhcCCCchh
Q 009970 11 KWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIID 90 (521)
Q Consensus 11 k~L~ea~~~Vk~qs~~Mkr~ld~~~l~~ALkhas~mL~ELRts~LsPk~YYeLYm~V~d~L~~L~~yl~d~~~~g~~l~d 90 (521)
|||+||+++||+||++||||||+++|||||||||+||+||||++||||+||||||+|||+|++|+.||.|+|++|++++|
T Consensus 1 k~L~ea~~~vk~qa~~Mkr~Ld~~~l~~aLk~as~mL~ELRt~~LsPk~YYeLYm~vfd~L~~L~~~l~~~~~~~~~l~d 80 (762)
T PF03635_consen 1 KLLEEALSVVKQQAFLMKRCLDNNKLMDALKHASNMLSELRTSSLSPKQYYELYMQVFDELRHLSSYLKDEHKKGRKLAD 80 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHhHHHHHHHHHHhccCCCcHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHHhhccccCCCCCCCCCCCCC
Q 009970 91 LYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDAD 170 (521)
Q Consensus 91 LYE~VQyagnIlPRLYLmITVG~~yi~~~~~p~~eILkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~LPd~~~~~~~~~g 170 (521)
|||+||||||||||||||||||++||+++++|++||||||+|||||||||+|||||||||+|+|||+|||+++ +++++|
T Consensus 81 LYE~VQyagnIvPRLYLmitVG~~yi~~~~~~~~eilkDlvEMcrGVQhP~RGLFLR~YL~q~~k~~LP~~~~-~~~~~g 159 (762)
T PF03635_consen 81 LYELVQYAGNIVPRLYLMITVGSVYIKSKEAPAKEILKDLVEMCRGVQHPIRGLFLRYYLSQMTKDKLPDTGS-EEGNGG 159 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhccccchhHHHHHHHHHHHhhhhCCCCCC-CCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875 668899
Q ss_pred ChhhhHHHHHHhHHHHHHHHHHHhccCCChhhhhhHHHHHHHHHHhhhhhHHhhhccCCCHHHHhhchhhHHHHHHHhcC
Q 009970 171 TVNDAMEFVLQNFTEMNKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCK 250 (521)
Q Consensus 171 ~~~dsi~Fll~NF~EMNKLWVRlQhqg~~rer~~R~~ER~eL~iLVGtnLvrLSqL~gi~~~~Y~~~iLP~iLeqIv~C~ 250 (521)
++.|||+||++||+||||||||||||||+|||+||++||+|||+||||||||||||||+|.++|++.|||+||||||+||
T Consensus 160 ~~~dsi~Fll~NF~EMNKLWVRlqhqg~srer~~R~~ER~eL~iLVG~NLvrLSqLeg~~~~~Y~~~iLP~ileqiv~c~ 239 (762)
T PF03635_consen 160 DVNDSIDFLLTNFIEMNKLWVRLQHQGHSREREKREKERKELRILVGSNLVRLSQLEGVDLEMYKEKILPRILEQIVQCR 239 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHhhHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHhHhHhHhccCchhhhhhHHHHHhhcccCCCCCCHHHHHHHHHHHHHhhhhhccCCCchh-----------hch
Q 009970 251 DEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEF-----------LQV 319 (521)
Q Consensus 251 D~lAQeYLmd~IIQvFPdEfHL~TL~~lL~a~~~l~~~V~v~~Il~~Li~RL~~y~~~~~~~~~~~-----------~~~ 319 (521)
|++|||||||||||||||||||+||++||+||++|+|+||+++|+++|||||++|+.++++..++. .++
T Consensus 240 D~lAQeYL~d~iIQvFPDefHL~TL~~lL~~~~~L~~~V~i~~il~~Li~RL~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (762)
T PF03635_consen 240 DVLAQEYLMDVIIQVFPDEFHLQTLDELLSACLQLQPGVNIKEILISLIDRLANYAEREPESESEFESEKEEEEEIPEDV 319 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhccccccccchhhhhcccchhhh
Confidence 999999999999999999999999999999999999999999999999999999999887754321 279
Q ss_pred HHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHhhhHhcCCCcchHHHHHHHHHHHhccCC---CCCChHHHHHHHHHH
Q 009970 320 EAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEG---KLEDNRATKQIVALL 396 (521)
Q Consensus 320 ~lF~~f~~~~~~l~~~~~~l~l~~~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~---~~~~~~~~~~l~~lL 396 (521)
++|++||+++.+++++||++|+++++++++||++|+++|||++++|||.+|++|++++++.+ ...++++.+.|++||
T Consensus 320 ~lF~~f~~~~~~l~~~~~~l~~~~~i~l~~sll~l~l~~yp~~~~~vd~vl~~~~~~l~~~~~~~~~~~~~~~~~L~~LL 399 (762)
T PF03635_consen 320 DLFEVFWDQLSKLIEARPDLPLEDIISLLVSLLNLSLKCYPDNLDYVDKVLKFCAEKLSNIGDSGKNHSSEAQKELVKLL 399 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998873 345567889999999
Q ss_pred HchhhhhhhhHHHhcCCCchHHHccCCchhhHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHhCCCCCCCCC----
Q 009970 397 SAPLDKYNDIVTVLKLSNYPSVMEYVDSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQ---- 472 (521)
Q Consensus 397 ~~pl~~~~~~~~vl~l~~f~~ll~~l~~~~rk~va~~il~~~l~~~~~i~s~~~~~~ll~~~~~Li~~~~~~~~~~---- 472 (521)
+.|+++|.++++++++++|++|++.|++++||+||..|+++++++++.|+|+++++.+|++++||++|.+++++++
T Consensus 400 ~~Pi~~~~~i~~vL~L~~y~~Ll~~L~~~~rk~IA~~Ii~~iL~~~~~Ist~e~v~~ll~li~pLi~d~~d~~~~~~~~~ 479 (762)
T PF03635_consen 400 TLPIDSYFSILTVLSLENYPPLLSLLPYETRKQIALEIIDNILENNTIISTPEEVDNLLELISPLIKDQDDQPSSEPDLK 479 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHhhcccHHHHHcCccHHHHHHhCChHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHhhCCCCCCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887753
Q ss_pred CChhhhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 009970 473 VDEDDFKEEQNSVARLIQMLQNDDTEEMFKVSERVILSLYD 513 (521)
Q Consensus 473 ~d~~~~~~eq~~var~ihli~~~d~~~q~~~l~~~r~~~~~ 513 (521)
.++++|.+||++|||+||+++++||++||++|..+|..|..
T Consensus 480 ~~~eef~eeQ~~varliHLi~~~D~d~~~~iL~~~rk~~~~ 520 (762)
T PF03635_consen 480 EDSEEFAEEQELVARLIHLIRSDDPDQQFEILNIARKHFGN 520 (762)
T ss_dssp -----TCCCHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 47889999999999999999999999999999999999973
No 2
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-153 Score=1226.09 Aligned_cols=487 Identities=71% Similarity=1.074 Sum_probs=473.1
Q ss_pred HHHHhccccHHHHHHHHHHHHHhhhcCCCCCchhhHHHHHHHhhhHHHHHHHHHHhhcCCCchhHHHHHHHhcchhHHHH
Q 009970 27 MHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLY 106 (521)
Q Consensus 27 Mkr~ld~~~l~~ALkhas~mL~ELRts~LsPk~YYeLYm~V~d~L~~L~~yl~d~~~~g~~l~dLYE~VQyagnIlPRLY 106 (521)
|+||||+||+||||||+++||+|||||.||||+||||||..||+|+.|+.||.|++++|++++||||+||||||||||||
T Consensus 1 m~r~ld~~~l~dalk~~~~ml~elRts~LsPk~YYeLym~~~~~L~~l~~~l~ee~~~~~~l~dLYElVQyagni~PRlY 80 (760)
T KOG1107|consen 1 MKRCLDKNKLMDALKHSAQMLSELRTSKLSPKKYYELYMRSFDELRCLEIFLKEETRRGHKLADLYELVQYAGNILPRLY 80 (760)
T ss_pred CchhhhcccHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcccchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCChhhhHHHHHHhHHHH
Q 009970 107 LLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFTEM 186 (521)
Q Consensus 107 LmITVG~~yi~~~~~p~~eILkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~LPd~~~~~~~~~g~~~dsi~Fll~NF~EM 186 (521)
||||||++|+|++++|+|||||||+|||||||||+||||||+||+||||++||+.|+.+++.+..+.|+++|++.||+||
T Consensus 81 Ll~TvGsvyik~~~a~~keIlkDlveMCRgVQhPlRGLFLR~YL~q~tr~~LP~~~edee~~~~~~~d~~~Fvl~NF~EM 160 (760)
T KOG1107|consen 81 LLITVGSVYIKSKEAPRKEILKDLVEMCRGVQHPLRGLFLRSYLAQCTRDKLPDIGEDEEGDADTVMDAVEFVLINFTEM 160 (760)
T ss_pred eeeEeceEEEecCCCcHHHHHHHHHHHHhccccchhHHHHHHHHHhcccccCCCCCCCccchhhccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998777776777889999999999999
Q ss_pred HHHHHHHhccCCChhhhhhHHHHHHHHHHhhhhhHHhhhccCCCHHHHhhchhhHHHHHHHhcCCcchhhHhHhHhHhcc
Q 009970 187 NKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVF 266 (521)
Q Consensus 187 NKLWVRlQhqg~~rer~~R~~ER~eL~iLVGtnLvrLSqL~gi~~~~Y~~~iLP~iLeqIv~C~D~lAQeYLmd~IIQvF 266 (521)
||||||||||||+|||++|+|||+|||||||+||||||||+|++.++|++.|||+||||||+|||++||+||||||||||
T Consensus 161 NKLWVRmQHqGp~re~ekrekER~ELriLVG~nLvrLsQle~~~~~mY~~~vLp~iLEQvV~CrD~laQeYLmeciiQvF 240 (760)
T KOG1107|consen 161 NKLWVRMQHQGPSREKEKREKERNELRILVGKNLVRLSQLEGVDLEMYRDDVLPRILEQVVNCRDELAQEYLMECIIQVF 240 (760)
T ss_pred HHHhhhhccCCchhHHHHHHHHHHHHHHHHhhhHHHHHHhccccHHHHhccccHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhhHHHHHhhcccCCCCCCHHHHHHHHHHHHHhhhhhccCCCchhhchHHHHHHHHHHHHHHhhCCCCChhhHHH
Q 009970 267 PDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVT 346 (521)
Q Consensus 267 PdEfHL~TL~~lL~a~~~l~~~V~v~~Il~~Li~RL~~y~~~~~~~~~~~~~~~lF~~f~~~~~~l~~~~~~l~l~~~i~ 346 (521)
||||||+||+.+|+||++++|+||++.++.+||+||++|+.++.++-|....+++|++||.++.+++++||++|+.++++
T Consensus 241 ~DefHLqTLd~~L~ac~~L~~~V~i~~~l~~l~dRLs~y~t~~~e~~p~~~~~~~f~~~~~~~~~vi~~r~dmpl~~~v~ 320 (760)
T KOG1107|consen 241 PDEFHLQTLDTLLGACPQLQPSVNIKILLIALVDRLSNYATSENEVLPAPLQMEAFEKLSNAITKVIQSRPDMPLDDIVT 320 (760)
T ss_pred CcHHHHHhHHHHHHHHHhcCCCcchHHHHHHHhhhhhHHHhccccCCchHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHH
Confidence 99999999999999999999999999999999999999999998877766689999999999999999999999999999
Q ss_pred HHHHHHHhhhHhcCCCcchHHHHH--HHHHHHhccCCCCCChHHHHHHHHHHHchhhhhhhhHHHhcCCCchHHHccCCc
Q 009970 347 LYSSLLTFTLHVHPDRLDYADQVL--GACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYVDS 424 (521)
Q Consensus 347 l~~sll~l~l~~yp~~~~~vd~il--~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vl~l~~f~~ll~~l~~ 424 (521)
+++|+++|+++|||++.+|+|++| +.|...++..+...++.+.++++++|..|++.|++++++++|++|+++++.+++
T Consensus 321 L~~sll~~~l~~ypdr~dy~dqvf~~~~~~~~~s~~~~~~~s~~~k~l~~~L~~p~~~y~nvvtll~L~~~~~v~~~~D~ 400 (760)
T KOG1107|consen 321 LYVSLLNFTLKCYPDRLDYADQVFQGGSCINQLSSTGKLADSPVTKELVALLSAPLEKYKNVLTLLKLSNYPKVMEYLDY 400 (760)
T ss_pred HHHHHHHhhHhhcCchHHHHHHHccCCCcccccCccccccccHHHHHHHHHHcchHHHHHhHHHHHHhhccCchhHHhch
Confidence 999999999999999999999999 677777766666667788899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHhCCCCCCCCCCChhhhHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 009970 425 ETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQMLQNDDTEEMFKVS 504 (521)
Q Consensus 425 ~~rk~va~~il~~~l~~~~~i~s~~~~~~ll~~~~~Li~~~~~~~~~~~d~~~~~~eq~~var~ihli~~~d~~~q~~~l 504 (521)
.+++.||..++++++++++.+++.++++.+|+++++|++|.++.|.++.|+++|.+||++|||+||++.++||+.|+.|+
T Consensus 401 ~~~~~ma~~i~q~~l~~~t~~~t~d~v~~l~~li~~likd~~~~~~~~~d~edf~eeqn~va~lIh~L~nddp~~q~~il 480 (760)
T KOG1107|consen 401 ETRKNMASYIVQSILENNTVISTADEVDSLFSLISGLIKDQDGQSADEVDEEDFQEEQNLVARLIHLLRNDDPEEQFLIL 480 (760)
T ss_pred HHHHHHHHHHHHHHHhhcceeehHhhHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 009970 505 ERVILSLYD 513 (521)
Q Consensus 505 ~~~r~~~~~ 513 (521)
..+|..|-+
T Consensus 481 ~~~r~~f~~ 489 (760)
T KOG1107|consen 481 NSAKKHFIK 489 (760)
T ss_pred HHHHHHhhc
Confidence 999998854
No 3
>KOG3682 consensus Predicted membrane protein (associated with esophageal cancer in humans) [Function unknown]
Probab=99.90 E-value=9.3e-21 Score=204.54 Aligned_cols=427 Identities=14% Similarity=0.165 Sum_probs=329.4
Q ss_pred HHHHHHHhHHHHHHHhccccHHHHHHHHHHHHHhhhcCCCCCchhhHHHHHHHhhhHHHHHHHHHHhhcCC----C----
Q 009970 16 GIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGC----S---- 87 (521)
Q Consensus 16 a~~~Vk~qs~~Mkr~ld~~~l~~ALkhas~mL~ELRts~LsPk~YYeLYm~V~d~L~~L~~yl~d~~~~g~----~---- 87 (521)
-+..|-+++--.++|..-++-.+++|......+-| -++-.-.+|+.-|+.++|.|+.+|+..+++++... +
T Consensus 142 yV~rI~el~~~~~~Aw~~d~~v~~lK~~i~~~kLl-~dt~v~~fyp~~fV~~td~ld~fG~iv~eRi~~k~~~d~~~~~~ 220 (930)
T KOG3682|consen 142 YVDRILELSTKSIRAWSLDNTVENLKSDISSFKLL-LDTFVAWFYPRAFVALTDKLDEFGMIVVERIRLKSLSDEKNLKN 220 (930)
T ss_pred HHHHHHHHHHhHHHhhhhhhHHHHHHhhhhhhhhc-cchhHHhhccceeEeeehhhHHHhHHHHHHHHHHhhhhhhhhhh
Confidence 34447777777888888889999999888887766 44666789999999999999999999999886521 0
Q ss_pred --------------------chhHHHHH----------HH---hcchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 009970 88 --------------------IIDLYELV----------QH---AGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMC 134 (521)
Q Consensus 88 --------------------l~dLYE~V----------Qy---agnIlPRLYLmITVG~~yi~~~~~p~~eILkDLvEMc 134 (521)
-.+..|.. |. .....||-||+..|-.||-+.-...++|.|-+|+-|.
T Consensus 221 ~~~~~~~~l~~~~~lit~f~~e~~~esfk~~c~~~~~f~~i~~~~elyp~~ylea~Il~c~~fL~~~~~~e~l~RL~~m~ 300 (930)
T KOG3682|consen 221 VKKASQRFLILRENLITAFGREDRVESFKIVCESANLFQSIPPQSELYPYYYLEAIILDCFGFLLYLLAKENLARLSAMF 300 (930)
T ss_pred hhhhHHHHHHHHHhhhhhcChhhhhhHHHHHHhChHhHhccCchhhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Confidence 12333333 22 1478999999999999999998877889999999999
Q ss_pred hcccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCChhhhHHHHHHhHHHHHHHHHHHhccCCChhhhhhHHHHHHHHH
Q 009970 135 RGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFTEMNKLWVRMQHQGPAREKDKREKERSELRD 214 (521)
Q Consensus 135 RGVQhPlRGLFLR~YL~q~~k~~LPd~~~~~~~~~g~~~dsi~Fll~NF~EMNKLWVRlQhqg~~rer~~R~~ER~eL~i 214 (521)
||.|+|+-.++.|+|+...+...=|... .+|..||+..-|.+--.
T Consensus 301 rg~~dPlvs~yar~y~~~~~~~i~~~~~--------------~yL~k~~~d~l~~f~~~--------------------- 345 (930)
T KOG3682|consen 301 RGEQDPLVSDYARNYFLKLSEIIDIPIR--------------FYLEKSMIDCLKFFDAA--------------------- 345 (930)
T ss_pred hccCCchHHHHHHHHHHHHhhhcCcchH--------------HHHHHHHHHHHHHHHHH---------------------
Confidence 9999999999999999999877755432 34555666654433211
Q ss_pred HhhhhhHHhhhccCCCHHHHhhchhhHHHHHHHhcCCcchhhHhHhHhHhccCchhhhhhHHHHHhhcccCCCCCCHHHH
Q 009970 215 LVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTV 294 (521)
Q Consensus 215 LVGtnLvrLSqL~gi~~~~Y~~~iLP~iLeqIv~C~D~lAQeYLmd~IIQvFPdEfHL~TL~~lL~a~~~l~~~V~v~~I 294 (521)
++.+ +.|++=+-|...+.|...+-|.+ +|+|.|++---|.+-|..-+.+-+++ |-||..+
T Consensus 346 ~~d~-~e~~~i~~~~~~~~l~sL~~pa~-------------~~i~~cl~~~~~~~~~~~~l~~~~~~------g~nv~~l 405 (930)
T KOG3682|consen 346 NLDI-LERLAIMCSQFNDDLSSLFAPAH-------------ITIYSCLIDPLNRTPHWRVLHDWMQA------GKNVMEL 405 (930)
T ss_pred hHHH-HhhhhhhhcccchhhhhhccHHH-------------HHHHHHhhccccccchHHHHHHHHhc------CccHHHH
Confidence 1222 45566666778889999999977 99999999999999997776654332 3347777
Q ss_pred HHHHHHHHH-hhhhh------------ccCC-----------------C-chhhchHHHHHHHHHHHHHHhhCCCCChhh
Q 009970 295 LSRLMERLS-NYAAS------------STEV-----------------L-PEFLQVEAFSKLNNAIGKVIEAQADMPILG 343 (521)
Q Consensus 295 l~~Li~RL~-~y~~~------------~~~~-----------------~-~~~~~~~lF~~f~~~~~~l~~~~~~l~l~~ 343 (521)
++.++.-|+ .+.+. ++.+ - ++.....+.+..|+.+.++- .+.|
T Consensus 406 Lh~~~t~l~~e~~~~~sm~~v~mI~~c~~~gf~~vl~~r~Lg~~l~~~~p~e~~lssli~evw~~v~~~~------n~qd 479 (930)
T KOG3682|consen 406 LHRKKTSLADERKEAVSMQGVSMIVQCVAHGFHTVLDLRPLGAYLRKTSPLEEKLSSLITEVWMRVADIS------NFQD 479 (930)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhcCchhhHhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHhc------CHHH
Confidence 777777664 23221 1111 1 12223456677777777765 5899
Q ss_pred HHHHHHHHHHhhhHhcCCCcchHHHHHHHHHHHhccCCCCCChHHHHHHHHHHHchhhhhhhhHHHhcCCCchHHHccCC
Q 009970 344 AVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYVD 423 (521)
Q Consensus 344 ~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vl~l~~f~~ll~~l~ 423 (521)
|+.+.+++..+..+.|-.+ +|+++++.+..++..... ..+....|..++..-++||.|.+.++.+++|.++++++.
T Consensus 480 yv~c~~awv~y~~k~~t~~--ev~~iL~dV~~~~r~d~~--~ee~~a~Lq~II~k~l~Hf~d~~~i~~~n~Fi~ilDl~~ 555 (930)
T KOG3682|consen 480 YVDCCAAWVSYITKYYTLK--EVTKILEDVLVRLRIDDQ--TEENTALLQNIIAKFLEHFSDCLDIVTSNSFIKILDLIG 555 (930)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCchhc--cchhhHHHHHHHHHHHHHHhhHHHHhhHhhHHHHHHHhc
Confidence 9999999999999999887 999999999999866432 225566788999999999999999999999999999999
Q ss_pred chh-hHHHHHHHHHHHHhCC-CccCCHHHHHHHHHHHHHHHhCCCCCCCCCCChhhhHHHHHHHHHHHHhhc-CCCHHHH
Q 009970 424 SET-NKVMAMVIIQSIMKNN-TQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQMLQ-NDDTEEM 500 (521)
Q Consensus 424 ~~~-rk~va~~il~~~l~~~-~~i~s~~~~~~ll~~~~~Li~~~~~~~~~~~d~~~~~~eq~~var~ihli~-~~d~~~q 500 (521)
+++ +..+-..|++.+.++. ..|+|+..++.+++.+++|.+..+-...++ +. ...-.++++|+-+++ +.+.|+|
T Consensus 556 ~~~~~tsvc~~il~~f~k~~~~~i~D~~~~q~L~evc~tl~da~~~~~~ed---~k-R~~s~LI~~f~~mVdfg~~~eq~ 631 (930)
T KOG3682|consen 556 YDIQSTSVCSRILEIFSKTFTHTISDISACQFLIEVCRTLCDAYRLEESED---VK-RAASQLICSFLSMVDFGTNLEQC 631 (930)
T ss_pred ccchhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHhhhhhhhh---hH-HHHHHHHHHHHHHHhhcccHHHH
Confidence 965 5578889999998875 479999999999999999997655443311 11 335579999999999 9999999
Q ss_pred HHHHHHHHHHHh
Q 009970 501 FKVSERVILSLY 512 (521)
Q Consensus 501 ~~~l~~~r~~~~ 512 (521)
+++++.||.+|-
T Consensus 632 L~f~vecRe~f~ 643 (930)
T KOG3682|consen 632 LEFIVECREDFG 643 (930)
T ss_pred HHHHHHHHHHhc
Confidence 999999999985
No 4
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.9e-15 Score=164.71 Aligned_cols=297 Identities=9% Similarity=-0.111 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCchhhHHHHHHHhhhHHHHHHHHHHhhcCCCchhHHHHHHHhcchhHHHHHHHHHHHHH
Q 009970 36 LRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVY 115 (521)
Q Consensus 36 l~~ALkhas~mL~ELRts~LsPk~YYeLYm~V~d~L~~L~~yl~d~~~~g~~l~dLYE~VQyagnIlPRLYLmITVG~~y 115 (521)
.+.+++++..+..+.+..-+.|+.|++.|++..+|...|..++..+.-+++.+.++|+.+++.+++.|+||..|++|-.+
T Consensus 148 d~~~Fvl~NF~EMNKLWVRmQHqGp~re~ekrekER~ELriLVG~nLvrLsQle~~~~~mY~~~vLp~iLEQvV~CrD~l 227 (760)
T KOG1107|consen 148 DAVEFVLINFTEMNKLWVRMQHQGPSREKEKREKERNELRILVGKNLVRLSQLEGVDLEMYRDDVLPRILEQVVNCRDEL 227 (760)
T ss_pred hHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHHHhhhHHHHHHhccccHHHHhccccHHHHHHHHhhhHHH
Confidence 56689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHhcccchhHHHHHHHHHHhhccccCCCCC--CCCCCCCCChhhhHHHHHHhHHHHHHHHHHH
Q 009970 116 IKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIG--SEYEGDADTVNDAMEFVLQNFTEMNKLWVRM 193 (521)
Q Consensus 116 i~~~~~p~~eILkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~LPd~~--~~~~~~~g~~~dsi~Fll~NF~EMNKLWVRl 193 (521)
.+.--........+...||+|++||+||.|.+++..++++.++|..+ +.|+ ..++-.|+
T Consensus 228 aQeYLmeciiQvF~DefHLqTLd~~L~ac~~L~~~V~i~~~l~~l~dRLs~y~-t~~~e~~p------------------ 288 (760)
T KOG1107|consen 228 AQEYLMECIIQVFPDEFHLQTLDTLLGACPQLQPSVNIKILLIALVDRLSNYA-TSENEVLP------------------ 288 (760)
T ss_pred HHHHHHHHhhhccCcHHHHHhHHHHHHHHHhcCCCcchHHHHHHHhhhhhHHH-hccccCCc------------------
Confidence 99998899899999999999999999999999999999999999864 1121 01111111
Q ss_pred hccCCChhhhhhHHHHHHHHHHhhhhhHHhhhccCCCHHHHhhchhhHHHHHHHhcCCcchhhHhHhHhHhccCchhhhh
Q 009970 194 QHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQ 273 (521)
Q Consensus 194 Qhqg~~rer~~R~~ER~eL~iLVGtnLvrLSqL~gi~~~~Y~~~iLP~iLeqIv~C~D~lAQeYLmd~IIQvFPdEfHL~ 273 (521)
+..+++|+++.+.++.+++....|.-...-..|.+.+.|.+..+++|.+|++.||||+
T Consensus 289 -----------------~~~~~~~f~~~~~~~~~vi~~r~dmpl~~~v~L~~sll~~~l~~ypdr~dy~dqvf~~----- 346 (760)
T KOG1107|consen 289 -----------------APLQMEAFEKLSNAITKVIQSRPDMPLDDIVTLYVSLLNFTLKCYPDRLDYADQVFQG----- 346 (760)
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHHHHHHHhhHhhcCchHHHHHHHccC-----
Confidence 6778899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcccCCCCCCHHHHHHHHHHHHHhhhhhccCCCchhhchHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHH
Q 009970 274 TLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLT 353 (521)
Q Consensus 274 TL~~lL~a~~~l~~~V~v~~Il~~Li~RL~~y~~~~~~~~~~~~~~~lF~~f~~~~~~l~~~~~~l~l~~~i~l~~sll~ 353 (521)
.+|.+.- +...+..|......++. -.+++.|..+.+.++++
T Consensus 347 ------~~~~~~~-------------------------------s~~~~~~~s~~~k~l~~--~L~~p~~~y~nvvtll~ 387 (760)
T KOG1107|consen 347 ------GSCINQL-------------------------------SSTGKLADSPVTKELVA--LLSAPLEKYKNVLTLLK 387 (760)
T ss_pred ------CCccccc-------------------------------CccccccccHHHHHHHH--HHcchHHHHHhHHHHHH
Confidence 1111110 11111222333322221 13456777888889999
Q ss_pred hhhHhcCCCcchHH-HHHHHHHHHhccCCCCCChHHHHHHHHHHHchhhhhhhhHHHhcCCCchHHH
Q 009970 354 FTLHVHPDRLDYAD-QVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVM 419 (521)
Q Consensus 354 l~l~~yp~~~~~vd-~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vl~l~~f~~ll 419 (521)
++..+++.+ |.| ...+.++..+...- ...+ ..+.. ...+-+.|+.+.++++..+++++.
T Consensus 388 L~~~~~v~~--~~D~~~~~~ma~~i~q~~-l~~~---t~~~t-~d~v~~l~~li~~likd~~~~~~~ 447 (760)
T KOG1107|consen 388 LSNYPKVME--YLDYETRKNMASYIVQSI-LENN---TVIST-ADEVDSLFSLISGLIKDQDGQSAD 447 (760)
T ss_pred hhccCchhH--HhchHHHHHHHHHHHHHH-Hhhc---ceeeh-HhhHHHHHHHHHHHHhcCCCCCcc
Confidence 998887773 433 33333333322110 0000 00000 113444566677777887777776
No 5
>PF14677 FANCI_S3: FANCI solenoid 3; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=63.77 E-value=70 Score=31.98 Aligned_cols=109 Identities=22% Similarity=0.322 Sum_probs=57.6
Q ss_pred HhHhHhccCchhhhhhHHHHHhhcccCCCC----CCHHHHHHHHHHHHHhhhhhccCCCchhhchHHHHHHHHHHHHHHh
Q 009970 259 MDCIIQVFPDEYHLQTLEILLGAFPQLQPS----VDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIE 334 (521)
Q Consensus 259 md~IIQvFPdEfHL~TL~~lL~a~~~l~~~----V~v~~Il~~Li~RL~~y~~~~~~~~~~~~~~~lF~~f~~~~~~l~~ 334 (521)
+..+.+.||++|+ +||+++.-...+ +|+...+...|+++-. .+.+... .
T Consensus 106 ~~~v~~~y~~k~~-----~FL~~i~~~~~~~~~~~d~~~~i~~~I~~f~r-------------------~~~~~~s---~ 158 (219)
T PF14677_consen 106 LSTVCQRYPDKFS-----QFLSAIDMTDDNAEEEKDLTERIQFQIRQFQR-------------------ELENFLS---S 158 (219)
T ss_dssp HHHHHHTSGGGHH-----HHHHHTS----STTTT-HHHHHHHHHHHHHHH-------------------HHHHHHH---S
T ss_pred HHHHHHHhhHHHH-----HHHHHhccccCCccccccHHHHHHHHHHHHHH-------------------HHhhccc---c
Confidence 4567899999987 589976433322 2444444444444321 1111111 1
Q ss_pred hCCCCChhhHHHHHHHHHHhhhHhcCCCcchHHHHHHHHHHHhccCCCCCChHHHHHHHHHH
Q 009970 335 AQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALL 396 (521)
Q Consensus 335 ~~~~l~l~~~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL 396 (521)
+..+...++++.|...+-.|+-...|+.. +.+.++.-+.+.+++.. ..++...+.+++||
T Consensus 159 ~~e~~~~K~~~~Lv~ils~L~~~l~~~s~-~~~q~~~W~~~~ck~~~-l~d~~~~k~ll~lL 218 (219)
T PF14677_consen 159 EEEDFNSKEAVLLVNILSQLSDHLDPSSD-QFTQMLSWTLKFCKENS-LEDSSFCKGLLSLL 218 (219)
T ss_dssp --SS--SHHHHHHHHHHHHHTTSS-SSSS-HHHHHHHHHHHHHHS----S-HHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHh
Confidence 22234456677777777777777777664 44578888888887753 34555666666665
No 6
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=53.01 E-value=96 Score=27.03 Aligned_cols=53 Identities=19% Similarity=0.365 Sum_probs=46.2
Q ss_pred hhhHHhhhccCCCHHHHhhchhhHHHHHHHhcCCcchhhHhHhHhHhccCchhh
Q 009970 218 KNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYH 271 (521)
Q Consensus 218 tnLvrLSqL~gi~~~~Y~~~iLP~iLeqIv~C~D~lAQeYLmd~IIQvFPdEfH 271 (521)
..+..+.--+|-+++.|-..+-- |..++-.|+.+++-+.+...|+..+|.+|+
T Consensus 30 ~~l~~~k~~~~~sv~~y~~~~~~-i~~~L~~~g~~i~d~~~v~~iL~~Lp~~y~ 82 (119)
T PF14223_consen 30 SQLENLKMKDGESVDEYISRLKE-IVDELRAIGKPISDEDLVSKILRSLPPSYD 82 (119)
T ss_pred HHHHHHHhcccccHHHHHHHHHH-hhhhhhhcCCcccchhHHHHHHhcCCchhH
Confidence 44556665678999999997775 999999999999999999999999999998
No 7
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=48.71 E-value=2.9e+02 Score=28.38 Aligned_cols=57 Identities=19% Similarity=0.131 Sum_probs=37.9
Q ss_pred HhhCCCCChhhHHHHHHHHHHhhhHhcCCCcchHHHHHHHHHHHhccCCCCCChHHHHHHHHHHH
Q 009970 333 IEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALLS 397 (521)
Q Consensus 333 ~~~~~~l~l~~~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~ 397 (521)
+...|++++..|+++.+++-..+..++ |.++..+.-.++.+. ..+.+..+.+++++-
T Consensus 193 iA~D~~L~~~kF~~Lae~lP~~aR~~h-------D~LYrAID~YLk~Hp-~ls~~Er~~lC~~ld 249 (258)
T PF03000_consen 193 IAPDPNLKPSKFVALAEALPDSARPSH-------DGLYRAIDIYLKAHP-GLSEEERKRLCRLLD 249 (258)
T ss_pred hcCCCCCCHHHHHHHHHHCCHhhhhcc-------chHHHHHHHHHHHcc-cCCHHHHHHHHhhCC
Confidence 446789999999999999999988754 455555555555443 223344455777653
No 8
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.31 E-value=45 Score=36.89 Aligned_cols=23 Identities=39% Similarity=0.326 Sum_probs=20.5
Q ss_pred HhcccchhHHHHHHHHHHhhccc
Q 009970 134 CRGIQHPVRGLFLRSYLSQISRD 156 (521)
Q Consensus 134 cRGVQhPlRGLFLR~YL~q~~k~ 156 (521)
.||=|.|=|.||+|.||+|-...
T Consensus 255 lKg~~spEraL~lRL~LLQGV~~ 277 (568)
T KOG2561|consen 255 LKGGQSPERALILRLELLQGVVA 277 (568)
T ss_pred ccCCCChhHHHHHHHHHHHHHHH
Confidence 68999999999999999997654
No 9
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=35.88 E-value=7.1e+02 Score=34.73 Aligned_cols=228 Identities=15% Similarity=0.225 Sum_probs=121.5
Q ss_pred HhHhHhccCchhhhhh---HHHHHhhcccCCCCCCHHHHHHHHHHHHHhhhh-hccCCCchhhchHHHHHHHHHHHHHHh
Q 009970 259 MDCIIQVFPDEYHLQT---LEILLGAFPQLQPSVDIKTVLSRLMERLSNYAA-SSTEVLPEFLQVEAFSKLNNAIGKVIE 334 (521)
Q Consensus 259 md~IIQvFPdEfHL~T---L~~lL~a~~~l~~~V~v~~Il~~Li~RL~~y~~-~~~~~~~~~~~~~lF~~f~~~~~~l~~ 334 (521)
+.+++.+-|-++-... +.-+++.|.+- ...++...++.++.|+-.-.. ..++-.-. ...+|..|++.+.+..+
T Consensus 1958 l~~v~~~~~~~~i~~n~~~vq~~le~cl~~-~~~~v~~~~~~~l~~~~~~~~~~~~e~e~~--~~~v~~~i~~~l~s~~~ 2034 (3550)
T KOG0889|consen 1958 LSVVLENVPKEWIRENLNQIQALLEKCLKS-GNLKVTEALNQLLSRLLSIFPNTHESLELL--YQVVSKLIDELLTSVTT 2034 (3550)
T ss_pred HHHHHhcCCcHHHHHhHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHhcCCCchhHHHH--hhHHHHHHHhhhhheec
Confidence 5666666777765544 34566667655 667788888888887743222 11110111 45678888888888876
Q ss_pred hCCCCChhhHHHHHHHHHHhhhHhcCCCcchHHHHHHHHHHHhccCCCC----------CChHHHHHHHHHHHchhhhhh
Q 009970 335 AQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEGKL----------EDNRATKQIVALLSAPLDKYN 404 (521)
Q Consensus 335 ~~~~l~l~~~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~~~----------~~~~~~~~l~~lL~~pl~~~~ 404 (521)
.. .......+. -+-+.-.+..++.+++|.++....+-+.+.... ..+++.+....++..-++
T Consensus 2035 ~~----~~~~~~~~~-~~~~l~~~~~~~~~~~drLl~~~~r~~~k~a~dhl~~~~~~~~~~~~a~k~~~ell~~sle--- 2106 (3550)
T KOG0889|consen 2035 VP----LQLASNVFG-TLTLLKTLCSNNPDYLDRLLPGFMRCFSKAAKDHLSCGAVLNSQLGDASKGRSELLIKSVE--- 2106 (3550)
T ss_pred cc----ccchHHHHH-HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhcccchhhHHHHHHHHHH---
Confidence 42 222222222 233334556677788998888776655443210 111222222233222222
Q ss_pred hhHHHhcCCCchHHHccCCchhhHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHhCCCCCCCCCCChhhhHHHHHH
Q 009970 405 DIVTVLKLSNYPSVMEYVDSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNS 484 (521)
Q Consensus 405 ~~~~vl~l~~f~~ll~~l~~~~rk~va~~il~~~l~~~~~i~s~~~~~~ll~~~~~Li~~~~~~~~~~~d~~~~~~eq~~ 484 (521)
-=...+.++.-+.|+.+...++..+++.. ++.+-...++++..-.+.+.+..++ +.+--.+
T Consensus 2107 ---------l~~~ri~~l~~~~r~~~~~~~l~~lieks---~d~~i~~~il~~~~~wi~~~~~~~t-------~~ek~al 2167 (3550)
T KOG0889|consen 2107 ---------LGRERIFYLGDSRRKSLSQSVLVLLIEKS---SDASILRCILKMLKEWIMNDDSFPT-------VREKLAL 2167 (3550)
T ss_pred ---------HhHHHHHHHHHHHhhhhHHHHHHHHHhhc---chHHHHHHHHHHHHHHHhccccccc-------hHHHHHH
Confidence 11222333334777888777777776543 3445556777777777765533322 2222333
Q ss_pred HHHHHHhhc--CCCHHHHHHHHHHHHHHHhhhhh
Q 009970 485 VARLIQMLQ--NDDTEEMFKVSERVILSLYDYLI 516 (521)
Q Consensus 485 var~ihli~--~~d~~~q~~~l~~~r~~~~~~~~ 516 (521)
+-|++..+. ..|.+-.-+++..+-.-+.+.-.
T Consensus 2168 l~km~~~~~krf~~~~L~~~~l~~v~~vy~~~~~ 2201 (3550)
T KOG0889|consen 2168 LLKMLTFEDKRFEDNELLAEFLDLVFTIYRDEIF 2201 (3550)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhh
Confidence 333333333 25677777777666666655433
No 10
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=35.59 E-value=33 Score=32.42 Aligned_cols=61 Identities=10% Similarity=0.191 Sum_probs=48.6
Q ss_pred CCccCCHHHHHHHHHHHHHHHhCCCCCCCCCCChhhhHHHHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHHhhhhhhc
Q 009970 442 NTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQMLQ---NDDTEEMFKVSERVILSLYDYLISL 518 (521)
Q Consensus 442 ~~~i~s~~~~~~ll~~~~~Li~~~~~~~~~~~d~~~~~~eq~~var~ihli~---~~d~~~q~~~l~~~r~~~~~~~~~~ 518 (521)
...|...-++.+++++++.+++..++. +-|||+- ..++++|-+.|..++.++..+=|.+
T Consensus 26 DPYir~~hQi~Nl~~F~El~vk~~~~~------------------~~i~LvT~~d~~~~~~Q~~~l~~i~~sl~~~gI~~ 87 (148)
T cd02685 26 DPYIRNFHQIRNFLRFCELVVKPPCEL------------------KYIHLVTGEDEDNGKQQIEALEEIKQSLASHGVEF 87 (148)
T ss_pred CccccchHHHHHHHHHHHHHhcCccce------------------EEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCcEE
Confidence 456888899999999999999833221 6677776 4467899999999999999888777
Q ss_pred cc
Q 009970 519 SV 520 (521)
Q Consensus 519 ~~ 520 (521)
++
T Consensus 88 ~~ 89 (148)
T cd02685 88 TW 89 (148)
T ss_pred EE
Confidence 65
No 11
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=34.87 E-value=3e+02 Score=28.89 Aligned_cols=112 Identities=9% Similarity=0.111 Sum_probs=66.7
Q ss_pred hhhHHHHHHHHHHhhhHhcCCC-cchHHHHHHHHHHHhccCCCCCChHHHHHHHHHHHchhhhhhhhHHHhcCCCchHHH
Q 009970 341 ILGAVTLYSSLLTFTLHVHPDR-LDYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVM 419 (521)
Q Consensus 341 l~~~i~l~~sll~l~l~~yp~~-~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vl~l~~f~~ll 419 (521)
-.+++.++.++++=.-...++. ..-.+.+|+.+.....+. -...|+....+-+||..-+.++.+.+.-+.-+.|..++
T Consensus 89 ~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d-~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~i 167 (319)
T PF08767_consen 89 EPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKD-FEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVI 167 (319)
T ss_dssp -HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSST-SSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh-hhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHH
Confidence 4467777777776666655554 344578888888887653 33457777889999999999875443323335588888
Q ss_pred ccCCchhh---HHHH---HHHHHHHHhCCCccCCHHHHHHH
Q 009970 420 EYVDSETN---KVMA---MVIIQSIMKNNTQISTADKVGAL 454 (521)
Q Consensus 420 ~~l~~~~r---k~va---~~il~~~l~~~~~i~s~~~~~~l 454 (521)
+.+-|..+ +.|+ ..++..++++-.. .+++....+
T Consensus 168 dsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~-~~~~~~~~F 207 (319)
T PF08767_consen 168 DSIVWGFKHTNREISETGLNILLELLNNVSK-TNPEFANQF 207 (319)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH--SHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh-cCHHHHHHH
Confidence 77766544 3443 4444444443212 444444333
No 12
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.59 E-value=2.8e+02 Score=32.67 Aligned_cols=99 Identities=14% Similarity=0.209 Sum_probs=75.2
Q ss_pred chHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHhhhHhcC--CCcchHHHHHHHHHHHhccCCCCCChHHHHHHHHH
Q 009970 318 QVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHP--DRLDYADQVLGACVKKLSGEGKLEDNRATKQIVAL 395 (521)
Q Consensus 318 ~~~lF~~f~~~~~~l~~~~~~l~l~~~i~l~~sll~l~l~~yp--~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~l 395 (521)
+-...+.|.+. ..+-|+...+..+++++.+...-...+. ++-.|+.++.+-+.+++.+-+...++..--.+++|
T Consensus 253 d~stlqlfFdl----y~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~il~np~~LsD~~nyHeFCRl 328 (1082)
T KOG1410|consen 253 DSSTLQLFFDL----YHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRILENPQGLSDPANYHEFCRL 328 (1082)
T ss_pred CchHHHHHHHH----hccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCcCCCCcchHHHHHHH
Confidence 33444555554 4555666667888888888877777763 44889999999999999887777777777779999
Q ss_pred HHchhhhhhhhHHHhcCCCchHHHcc
Q 009970 396 LSAPLDKYNDIVTVLKLSNYPSVMEY 421 (521)
Q Consensus 396 L~~pl~~~~~~~~vl~l~~f~~ll~~ 421 (521)
|..-=.+| .+-.+.+.+.|+..+.+
T Consensus 329 laRlktNY-QL~ELv~v~~Y~e~irL 353 (1082)
T KOG1410|consen 329 LARLKTNY-QLGELVKVECYPEVIRL 353 (1082)
T ss_pred HHHHHhhh-hhHhhhccCCcHHHHHH
Confidence 98887888 68888889999988754
No 13
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=30.73 E-value=2.1e+02 Score=24.07 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHhhhHhcCCCcchHHHHHHHHHHHhcc
Q 009970 319 VEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSG 379 (521)
Q Consensus 319 ~~lF~~f~~~~~~l~~~~~~l~l~~~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~ 379 (521)
..++ ...++-.++++. +++++|++.+..+.+ ...+|+-.+.+..-|.+..+.+.+
T Consensus 18 ~~L~-~~~~~~r~~i~~--~I~PEeIv~iH~~~v---~~l~~~~~~~v~~sld~LlEvm~~ 72 (77)
T PF08673_consen 18 QSLY-QAQEFGRELIEK--DISPEEIVEIHKSAV---QELSPSLPEDVLDSLDFLLEVMIG 72 (77)
T ss_dssp HHHH-HHHHHHHHHHHT--T--HHHHHHHHHHHH---HHH-TTS-HHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHc--CCCHHHHHHHHHHHH---HHHccccHHHHHHHHHHHHHHHHH
Confidence 4566 677777888876 799999999998887 455666566777777777766544
No 14
>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]
Probab=27.59 E-value=1.1e+02 Score=28.94 Aligned_cols=46 Identities=24% Similarity=0.416 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhhhc-CCCCCchhhHHHHHH----HhhhHHHHHHHHHH
Q 009970 36 LRDALKYSAQMLSELRT-SKLSPQKYYQLYMRA----FDELRKLEMFFKEE 81 (521)
Q Consensus 36 l~~ALkhas~mL~ELRt-s~LsPk~YYeLYm~V----~d~L~~L~~yl~d~ 81 (521)
-|.-+..--.+|.+||. ..+.|..|-+||+++ |...++|-.|+.+.
T Consensus 95 Wi~~IRalR~~Lr~lrd~gkIdk~~YR~lY~~aKGg~fk~~~~L~~~i~~~ 145 (150)
T COG2147 95 WIKRIRALRRELRKLRDDGKIDKHTYRKLYRMAKGGAFKSKSHLKSYIEEA 145 (150)
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCccccHHHHHHHHHHh
Confidence 34555555668888985 689999999999997 88889999998874
No 15
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=22.35 E-value=1.1e+03 Score=26.04 Aligned_cols=97 Identities=8% Similarity=0.108 Sum_probs=59.5
Q ss_pred chHHHccCCchhhHHHHHHHHHHHH-hCCCccCCHHHHHHHHHHHHHHHhCC--CCCCCCCCChhhhHHHHHHHHHHHHh
Q 009970 415 YPSVMEYVDSETNKVMAMVIIQSIM-KNNTQISTADKVGALFELIKGLIRDL--DGAAHDQVDEDDFKEEQNSVARLIQM 491 (521)
Q Consensus 415 f~~ll~~l~~~~rk~va~~il~~~l-~~~~~i~s~~~~~~ll~~~~~Li~~~--~~~~~~~~d~~~~~~eq~~var~ihl 491 (521)
+..+=+++.......+...+++-+. .......+...+.+-..++.-++-.. ++.|. -.+. -+..+..|...
T Consensus 236 w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~-----l~~~-~~~vl~sl~~a 309 (464)
T PF11864_consen 236 WRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPS-----LPFS-PSSVLPSLLNA 309 (464)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcce-----eccc-HHHHHHHHHHH
Confidence 3334444444555555555555542 33445677777777777777777554 22221 0111 23677888888
Q ss_pred hcCCCHHHHHHHHHHHHHHH-hhhhhh
Q 009970 492 LQNDDTEEMFKVSERVILSL-YDYLIS 517 (521)
Q Consensus 492 i~~~d~~~q~~~l~~~r~~~-~~~~~~ 517 (521)
+.+.++-.-++++..++..| .+|.-.
T Consensus 310 l~~~~~~v~~eIl~~i~~ll~~~~~~~ 336 (464)
T PF11864_consen 310 LKSNSPRVDYEILLLINRLLDGKYGRE 336 (464)
T ss_pred HhCCCCeehHHHHHHHHHHHhHhhhhh
Confidence 88888888889988888888 665443
No 16
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=22.11 E-value=4.6e+02 Score=23.68 Aligned_cols=54 Identities=13% Similarity=0.176 Sum_probs=35.6
Q ss_pred CChhHHHHHHHHHHHHHHHhHHHHHHHhccccH---HHHHHHHHHHHHhhhcCCCCCchhhH
Q 009970 4 DGVEDEEKWLAAGIAGLQQNAFYMHRALDSNNL---RDALKYSAQMLSELRTSKLSPQKYYQ 62 (521)
Q Consensus 4 ~~~~~q~k~L~ea~~~Vk~qs~~Mkr~ld~~~l---~~ALkhas~mL~ELRts~LsPk~YYe 62 (521)
||.+-=.-+.+.++..++.- +.|+++++. ..++.+|..++.||+. +|.++.-+|
T Consensus 19 sp~~Li~mLydg~i~~l~~a----~~ai~~~d~~~~~~~i~ka~~Ii~eL~~-~Ld~e~gge 75 (124)
T TIGR00208 19 SPGELTLMLYNGCLKFIRLA----AQAIENDDIERKNENLIKAQNIIQELNF-TLDREKNIE 75 (124)
T ss_pred CHHHHHHHHHHHHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHHHHHHHh-hcCCccchH
Confidence 34444445667777777663 444555555 5579999999999977 777654443
No 17
>cd01418 Ribosomal_L19e_A Ribosomal protein L19e, archaeal. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=21.80 E-value=1.7e+02 Score=27.68 Aligned_cols=43 Identities=30% Similarity=0.597 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhhc-CCCCCchhhHHHHHH----HhhhHHHHHHHHHH
Q 009970 39 ALKYSAQMLSELRT-SKLSPQKYYQLYMRA----FDELRKLEMFFKEE 81 (521)
Q Consensus 39 ALkhas~mL~ELRt-s~LsPk~YYeLYm~V----~d~L~~L~~yl~d~ 81 (521)
-++---..|.+||. ..+.+..|-+||+.+ |....+|-.|+.+.
T Consensus 95 riR~lRr~Lk~~R~~~kId~~~Yr~lY~kaKGn~Fkn~~~L~~~I~~~ 142 (145)
T cd01418 95 TIRALRRYLKELRDKGKIDKKTYRKLYRKAKGGSFRSLSHLKSYLKQH 142 (145)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 34444457889995 459999999999998 88999998888764
No 18
>PF12354 Internalin_N: Bacterial adhesion/invasion protein N terminal; PDB: 2OMT_A 1H6U_A 3RFS_A 3RFJ_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=21.75 E-value=39 Score=26.85 Aligned_cols=9 Identities=56% Similarity=0.874 Sum_probs=7.6
Q ss_pred hHhccCchh
Q 009970 262 IIQVFPDEY 270 (521)
Q Consensus 262 IIQvFPdEf 270 (521)
|.|+|||+=
T Consensus 42 InqIFPD~~ 50 (57)
T PF12354_consen 42 INQIFPDPA 50 (57)
T ss_dssp HHHHSSSHH
T ss_pred hhhhcCCHH
Confidence 799999974
No 19
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=21.63 E-value=1.1e+02 Score=20.74 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHhcc
Q 009970 108 LCTVGSVYIKSKE-APAKDVLKDLVEMCRGI 137 (521)
Q Consensus 108 mITVG~~yi~~~~-~p~~eILkDLvEMcRGV 137 (521)
+-.+|.+|...++ ..+.......+++++-+
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 5678899999887 47778888888888754
No 20
>PF07540 NOC3p: Nucleolar complex-associated protein; InterPro: IPR011501 Nucleolar complex-associated protein (Noc3p, Q07896 from SWISSPROT) is conserved in eukaryotes and plays essential roles in replication and rRNA processing in Saccharomyces cerevisiae [].
Probab=21.42 E-value=1.5e+02 Score=25.89 Aligned_cols=47 Identities=26% Similarity=0.369 Sum_probs=31.2
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcc-cchhHHHHHHHHHHhhccccCCCC
Q 009970 113 SVYIKSKEAPAKDVLKDLVEMCRGI-QHPVRGLFLRSYLSQISRDKLPDI 161 (521)
Q Consensus 113 ~~yi~~~~~p~~eILkDLvEMcRGV-QhPlRGLFLR~YL~q~~k~~LPd~ 161 (521)
+.-+..++... .-|++|.+||..- -..+|.| .-.=|....||.+|+-
T Consensus 13 ~~ile~PE~ni-~~lk~l~~~~~~~~~~~v~kL-a~lSl~~VFkDIiPgY 60 (95)
T PF07540_consen 13 SSILEDPEENI-GSLKRLLKLCESKVDVTVRKL-AILSLLAVFKDIIPGY 60 (95)
T ss_pred HHHHHCHHHHH-HHHHHHHHHHhccchHHHHHH-HHHHHHHHHhhcCCCc
Confidence 33333333333 3499999999998 6667766 3344566779999974
No 21
>PRK05685 fliS flagellar protein FliS; Validated
Probab=20.85 E-value=6.4e+02 Score=22.93 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=37.5
Q ss_pred CChhHHHHHHHHHHHHHHHhHHHHHHHhccccH---HHHHHHHHHHHHhhhcCCCCCchhhH
Q 009970 4 DGVEDEEKWLAAGIAGLQQNAFYMHRALDSNNL---RDALKYSAQMLSELRTSKLSPQKYYQ 62 (521)
Q Consensus 4 ~~~~~q~k~L~ea~~~Vk~qs~~Mkr~ld~~~l---~~ALkhas~mL~ELRts~LsPk~YYe 62 (521)
+|.+=---+.+.|+..+++ .+.|++++++ .+++.+|..++.||+. +|-+..-.|
T Consensus 23 sp~~Li~mLydgai~~l~~----A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~-sLd~e~gge 79 (132)
T PRK05685 23 SPHKLIQMLYEGALSFLAQ----AKLAIEQGDIEAKGEYLSKAINIINGLRN-SLDMEKGGE 79 (132)
T ss_pred CHHHHHHHHHHHHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHHHHHHHh-hcCCccccH
Confidence 4445555677888887776 3555666555 4579999999999977 777764333
No 22
>PF13035 DUF3896: Protein of unknown function (DUF3896)
Probab=20.62 E-value=66 Score=25.38 Aligned_cols=15 Identities=47% Similarity=0.784 Sum_probs=12.3
Q ss_pred hhhHHHHHHhHHHHHH
Q 009970 173 NDAMEFVLQNFTEMNK 188 (521)
Q Consensus 173 ~dsi~Fll~NF~EMNK 188 (521)
.|..+||+ |..|||-
T Consensus 42 idnyeyil-nlvemnh 56 (61)
T PF13035_consen 42 IDNYEYIL-NLVEMNH 56 (61)
T ss_pred hhhHHHHH-HHHHHhc
Confidence 46788998 9999984
No 23
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=20.46 E-value=1.7e+02 Score=30.98 Aligned_cols=45 Identities=24% Similarity=0.426 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhhc-CCCCCchhhHHHHHH----HhhhHHHHHHHHHH
Q 009970 37 RDALKYSAQMLSELRT-SKLSPQKYYQLYMRA----FDELRKLEMFFKEE 81 (521)
Q Consensus 37 ~~ALkhas~mL~ELRt-s~LsPk~YYeLYm~V----~d~L~~L~~yl~d~ 81 (521)
|.-++---.+|.+||. ..+.+..|-+||+.+ |....+|-.|+.+.
T Consensus 96 IrRIRaLRRlLKklRd~gKIDkh~YR~LYrKAKGn~FKNK~~L~e~I~k~ 145 (357)
T PTZ00436 96 MRRLRILRRLLRKYREEKKIDRHIYRELYVKAKGNVFRNKRNLMEHIHKV 145 (357)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCccCcHHHHHHHHHHH
Confidence 3344444558999995 459999999999997 88999998888774
Done!