Query 009970
Match_columns 521
No_of_seqs 113 out of 197
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 17:00:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gw4_A Uncharacterized protein 42.0 1.6E+02 0.0053 24.9 9.8 126 31-179 37-170 (203)
2 3ro3_A PINS homolog, G-protein 41.3 1.3E+02 0.0044 23.7 10.7 125 32-179 21-152 (164)
3 1bl1_A Parathyroid hormone rec 40.7 7 0.00024 26.5 0.4 15 100-114 15-29 (31)
4 3q15_A PSP28, response regulat 27.2 4.2E+02 0.014 25.3 11.4 69 99-180 216-285 (378)
5 1w53_A Phosphoserine phosphata 21.7 3.1E+02 0.011 22.3 7.3 53 322-379 27-79 (84)
6 4a5z_A MITD1, MIT domain-conta 21.5 54 0.0018 30.2 2.9 61 442-520 42-106 (163)
7 1orj_A Flagellar protein FLIS; 20.1 1.8E+02 0.006 25.5 5.9 69 5-82 18-93 (130)
8 3opb_A SWI5-dependent HO expre 20.0 9.8E+02 0.033 27.0 15.9 234 244-508 138-402 (778)
9 3gw4_A Uncharacterized protein 19.3 4E+02 0.014 22.2 14.9 117 31-154 77-197 (203)
10 3a6p_A Exportin-5; exportin-5, 18.4 8.5E+02 0.029 28.4 13.0 134 237-378 529-681 (1204)
No 1
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=42.01 E-value=1.6e+02 Score=24.86 Aligned_cols=126 Identities=12% Similarity=0.076 Sum_probs=78.1
Q ss_pred hccccHHHHHHHHHHHHHhhhcCCCCCchhhHHHHHHHhhhHHHHHHHHHHhhcCC--CchhHH----HHHHHhc-chhH
Q 009970 31 LDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGC--SIIDLY----ELVQHAG-NILP 103 (521)
Q Consensus 31 ld~~~l~~ALkhas~mL~ELRts~LsPk~YYeLYm~V~d~L~~L~~yl~d~~~~g~--~l~dLY----E~VQyag-nIlP 103 (521)
...++..+|+++....+...+.....|.. ...+..++...... |+ .-.+.| +...-.| +-..
T Consensus 37 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 37 AFMDRFDEARASFQALQQQAQKSGDHTAE--------HRALHQVGMVERMA---GNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTTCCHHHH--------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHhCcHHHHHHHHHHHHHHHHHcCCcHHH--------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 44588999999999998877765443322 12222333333221 21 111222 2222345 3334
Q ss_pred HHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCChhhhHHHH
Q 009970 104 RLYLLCTVGSVYIKSKE-APAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFV 179 (521)
Q Consensus 104 RLYLmITVG~~yi~~~~-~p~~eILkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~LPd~~~~~~~~~g~~~dsi~Fl 179 (521)
..+.....|.+|...++ ..+.+.++.-+++++...+|..-....+.+..+.... |+...+++++
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~------------g~~~~A~~~~ 170 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE------------KNLLEAQQHW 170 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC------------cCHHHHHHHH
Confidence 56777889999999987 4678889999999999888876555556666555433 5677776654
No 2
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=41.25 E-value=1.3e+02 Score=23.71 Aligned_cols=125 Identities=14% Similarity=0.053 Sum_probs=74.9
Q ss_pred ccccHHHHHHHHHHHHHhhhcCCCCCchhhHHHHHHHhhhHHHHHHHHHHhhcCC--CchhHHHH----HHHhcchhHHH
Q 009970 32 DSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGC--SIIDLYEL----VQHAGNILPRL 105 (521)
Q Consensus 32 d~~~l~~ALkhas~mL~ELRts~LsPk~YYeLYm~V~d~L~~L~~yl~d~~~~g~--~l~dLYE~----VQyagnIlPRL 105 (521)
..++..+|+++....+...+...- |.. ....+..++...... |+ .-.+.|+. ..-.++-..+.
T Consensus 21 ~~~~~~~A~~~~~~al~~~~~~~~-~~~-------~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 21 LLGNFRDAVIAHEQRLLIAKEFGD-KAA-------ERIAYSNLGNAYIFL---GEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTC-HHH-------HHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHhCC-chH-------HHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 347889999999888877655211 111 111222333333321 21 11222222 23345555556
Q ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCChhhhHHHH
Q 009970 106 YLLCTVGSVYIKSKE-APAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFV 179 (521)
Q Consensus 106 YLmITVG~~yi~~~~-~p~~eILkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~LPd~~~~~~~~~g~~~dsi~Fl 179 (521)
......|.+|...++ ..+.+.++..++.++...+|..-....+.+..+.... |+...+++++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~------------g~~~~A~~~~ 152 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL------------GNHDQAMHFA 152 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc------------cCHHHHHHHH
Confidence 677788999999887 4677889999999998888766666666666655433 4566666554
No 3
>1bl1_A Parathyroid hormone receptor; micelle structures, calciotropic hormones, structures; NMR {Homo sapiens} SCOP: j.15.1.1
Probab=40.74 E-value=7 Score=26.45 Aligned_cols=15 Identities=33% Similarity=0.549 Sum_probs=12.3
Q ss_pred chhHHHHHHHHHHHH
Q 009970 100 NILPRLYLLCTVGSV 114 (521)
Q Consensus 100 nIlPRLYLmITVG~~ 114 (521)
.+-+|||+|=|||=.
T Consensus 15 e~FeRL~~iYTVGYS 29 (31)
T 1bl1_A 15 EVFDRLGMIYTVGYS 29 (31)
T ss_dssp HHHHSSHHHHHHHHH
T ss_pred HHHhheeeEEEEeee
Confidence 466899999999953
No 4
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=27.23 E-value=4.2e+02 Score=25.34 Aligned_cols=69 Identities=14% Similarity=0.034 Sum_probs=49.5
Q ss_pred cchhHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCChhhhHH
Q 009970 99 GNILPRLYLLCTVGSVYIKSKE-APAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAME 177 (521)
Q Consensus 99 gnIlPRLYLmITVG~~yi~~~~-~p~~eILkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~LPd~~~~~~~~~g~~~dsi~ 177 (521)
|+--.........|.+|...++ ..+.+.++.-+++++...+|.. ....+.|..+.... |+...|++
T Consensus 216 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~------------g~~~~A~~ 282 (378)
T 3q15_A 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKA------------GQTQKAFQ 282 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHT------------TCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHC------------CCHHHHHH
Confidence 4443445566778999999887 5678889999999998888887 56666666655433 56777776
Q ss_pred HHH
Q 009970 178 FVL 180 (521)
Q Consensus 178 Fll 180 (521)
++-
T Consensus 283 ~~~ 285 (378)
T 3q15_A 283 FIE 285 (378)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 5
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=21.66 E-value=3.1e+02 Score=22.35 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHhhhHhcCCCcchHHHHHHHHHHHhcc
Q 009970 322 FSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSG 379 (521)
Q Consensus 322 F~~f~~~~~~l~~~~~~l~l~~~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~ 379 (521)
.....++-..+++. +++++|++++..+.+ ...+|+-.+.+..-|.+..+...+
T Consensus 27 Ly~~q~fs~~~iek--~i~PEeiV~iHk~~i---~el~~~l~e~v~~Sfd~L~Evm~g 79 (84)
T 1w53_A 27 LYQAQKFSRKTIEH--QIPPEEIISIHRKVL---KELYPSLPEDVFHSLDFLIEVMIG 79 (84)
T ss_dssp HHHHHHHHHHHHHT--TCCHHHHHHHHHHHH---HHHCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHc--CCCHHHHHHHHHHHH---HHhcCCChHHHHHHHHHHHHHHHH
Confidence 33455666667775 899999999998887 567787677777777777776544
No 6
>4a5z_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; 2.30A {Homo sapiens}
Probab=21.48 E-value=54 Score=30.19 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=47.1
Q ss_pred CCccCCHHHHHHHHHHHHHHHhCCCCCCCCCCChhhhHHHHHHHHHHHHhhcCC----CHHHHHHHHHHHHHHHhhhhhh
Q 009970 442 NTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQMLQND----DTEEMFKVSERVILSLYDYLIS 517 (521)
Q Consensus 442 ~~~i~s~~~~~~ll~~~~~Li~~~~~~~~~~~d~~~~~~eq~~var~ihli~~~----d~~~q~~~l~~~r~~~~~~~~~ 517 (521)
...|...=++.+++++|+.+++..++. +-|||+-+. ++++|.+.|..++.++..+=|.
T Consensus 42 DPYIR~~hQi~NfvrF~Ellvk~~~~~------------------~~I~L~T~~d~~~~~~~Q~~~L~~ik~sL~~~gI~ 103 (163)
T 4a5z_A 42 DPYIRHTHQLYNFLRFCEMLIKRPCKV------------------KTIHLLTSLDEGIEQVQQSRGLQEIEESLRSHGVL 103 (163)
T ss_dssp CSCCCSHHHHHHHHHHHHHHHC--CCC------------------CEEEEEECCCCSTTHHHHHHHHHHHHHHHHHTTCE
T ss_pred CCccccHHHHHHHHHHHHHHHhcCCCc------------------cEEEEEeCCccccCHHHHHHHHHHHHHHHHHCCCE
Confidence 456889999999999999999753322 127777633 4789999999999999998887
Q ss_pred ccc
Q 009970 518 LSV 520 (521)
Q Consensus 518 ~~~ 520 (521)
+.+
T Consensus 104 l~~ 106 (163)
T 4a5z_A 104 LEV 106 (163)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 7
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=20.11 E-value=1.8e+02 Score=25.46 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=44.3
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHHHHHhccccH-------HHHHHHHHHHHHhhhcCCCCCchhhHHHHHHHhhhHHHHHH
Q 009970 5 GVEDEEKWLAAGIAGLQQNAFYMHRALDSNNL-------RDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMF 77 (521)
Q Consensus 5 ~~~~q~k~L~ea~~~Vk~qs~~Mkr~ld~~~l-------~~ALkhas~mL~ELRts~LsPk~YYeLYm~V~d~L~~L~~y 77 (521)
|.+=-.-+.+.|+..+++ -+.++++++. .++|..|..++.||+. +|-+..=+| |.+.|..|=.|
T Consensus 18 P~~Li~mLydgai~~l~~----A~~ai~~~d~~~~k~~~~~~i~KA~~Ii~eL~~-sLd~e~Gge----iA~nL~~LY~y 88 (130)
T 1orj_A 18 PLEQIILLYDKAIECLER----AIEIYDQVNELEKRKEFVENIDRVYDIISALKS-FLDHEKGKE----IAKNLDTIYTI 88 (130)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHTGGGTTSHHHHHHHHHHHHHHHHHHHHHHH-TCCTTTSHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH-hcCCccCcH----HHHHHHHHHHH
Confidence 333334456667776665 4556666777 5669999999999988 677764334 34555555555
Q ss_pred HHHHh
Q 009970 78 FKEET 82 (521)
Q Consensus 78 l~d~~ 82 (521)
+..+.
T Consensus 89 ~~~~L 93 (130)
T 1orj_A 89 ILNTL 93 (130)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 8
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=19.95 E-value=9.8e+02 Score=27.00 Aligned_cols=234 Identities=12% Similarity=0.160 Sum_probs=114.5
Q ss_pred HHHHhcCCcchhhHhHhHhHhc-------cCchhhhhhHHHHHhhcccCCCCCCHHHHHHHHHHHHHhhhhhccCCCchh
Q 009970 244 EQVVNCKDEIAQCYLMDCIIQV-------FPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEF 316 (521)
Q Consensus 244 eqIv~C~D~lAQeYLmd~IIQv-------FPdEfHL~TL~~lL~a~~~l~~~V~v~~Il~~Li~RL~~y~~~~~~~~~~~ 316 (521)
.+.+...+...-.|++-|+.|. ||| .+ -+++-+.--....+++.+.--..-|+-.-.+
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~-~~-----~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~--------- 202 (778)
T 3opb_A 138 QIRIHYGEDTHVTYLLSIILQLLNKFKYNFKE-VR-----FLVKELILRISEDEVKSMMLIIFAELQSSFQ--------- 202 (778)
T ss_dssp HHHHHHTCSSCHHHHHHHHHHHHHHSCCCSTT-TT-----HHHHHHHTTTTCHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHhhcCCCcchhHHHHHHHHHHHHcCccccc-hh-----hHHHHhccccChhhhHHHHHHHHHHHHHhCc---------
Confidence 4446644444889999999997 666 33 3555554444555677766555555532111
Q ss_pred hchHHHHHHHHHHHHH-HhhCCCCChhhHHHHHHHHHHhhhHhcCCCcchHHHHHH------HHHHHhccCCCCCChHHH
Q 009970 317 LQVEAFSKLNNAIGKV-IEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLG------ACVKKLSGEGKLEDNRAT 389 (521)
Q Consensus 317 ~~~~lF~~f~~~~~~l-~~~~~~l~l~~~i~l~~sll~l~l~~yp~~~~~vd~il~------~~~~~l~~~~~~~~~~~~ 389 (521)
-+-.+.|.+++..+ +++.++..-++++..+. ..-.+||=-++-...+|- ...+++... .+....
T Consensus 203 --~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~----~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~---~~~~~~ 273 (778)
T 3opb_A 203 --KDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVK----TLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEE---QDLQFT 273 (778)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHH----HHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSS---CCHHHH
T ss_pred --hHHHHHHHHHHHHHHHhhccCCCCccHHHHHH----HHHHHhcCCHHHHHHHHccccHHHHHHHHHhcc---cchHHH
Confidence 13345677888744 45444433333333222 223455555444333331 222233221 123344
Q ss_pred HHHHHHHHchhh--hhhhhHHHhcCCCchHHH-ccCCchhhHHHHHHHHHHHHhCC-CccCCHHHHHHHHHHHHHHHhCC
Q 009970 390 KQIVALLSAPLD--KYNDIVTVLKLSNYPSVM-EYVDSETNKVMAMVIIQSIMKNN-TQISTADKVGALFELIKGLIRDL 465 (521)
Q Consensus 390 ~~l~~lL~~pl~--~~~~~~~vl~l~~f~~ll-~~l~~~~rk~va~~il~~~l~~~-~~i~s~~~~~~ll~~~~~Li~~~ 465 (521)
..+.++|..--. ..-+.. .++|.+.+ ..+..+.-+..|.-++-++...+ ..-.+ +..+.+.+...+...
T Consensus 274 ~a~L~lLsaACi~~~cR~~I----~~~~~~~L~~~l~~~~ir~lAavvL~KL~~~~~~~~~s---i~~La~~~~~~L~~~ 346 (778)
T 3opb_A 274 KELLRLLSSACIDETMRTYI----TENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCIN---LKQLSEIFINAISRR 346 (778)
T ss_dssp HHHHHHHHHHCCSHHHHHHH----HHHHHHHHHHHTTSGGGHHHHHHHHHHHTGGGTCTTCC---HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCcHHHHHH----HHhHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCcCc---HHHHHHHHHHHHhcC
Confidence 555555554321 000001 12222222 12222222445555555544321 11122 334555555555443
Q ss_pred CCC------------CCCCCChhhhHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHH
Q 009970 466 DGA------------AHDQVDEDDFKEEQNSVARLIQMLQN-DDTEEMFKVSERVI 508 (521)
Q Consensus 466 ~~~------------~~~~~d~~~~~~eq~~var~ihli~~-~d~~~q~~~l~~~r 508 (521)
+.. +.+...-+.+.++|..+-+++.++.. +|...+|..+..+-
T Consensus 347 ~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~ 402 (778)
T 3opb_A 347 IVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMA 402 (778)
T ss_dssp CHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 210 00111235788899999999999994 78888888876654
No 9
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=19.30 E-value=4e+02 Score=22.18 Aligned_cols=117 Identities=9% Similarity=-0.045 Sum_probs=75.6
Q ss_pred hccccHHHHHHHHHHHHHhhhcCCCCCchhhHHHHHHHhhhHHHHHHHHHHh--hc-CCCchhHHHHHHHhcchhHHHHH
Q 009970 31 LDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEET--RR-GCSIIDLYELVQHAGNILPRLYL 107 (521)
Q Consensus 31 ld~~~l~~ALkhas~mL~ELRts~LsPk~YYeLYm~V~d~L~~L~~yl~d~~--~~-g~~l~dLYE~VQyagnIlPRLYL 107 (521)
...++..+|+++....+...+...-.|...-.. +..++......- .. -..+.+-.+..+-.|+..+.-+.
T Consensus 77 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-------~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 149 (203)
T 3gw4_A 77 RMAGNWDAARRCFLEERELLASLPEDPLAASAN-------AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA 149 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH-------HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHH-------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 456889999999888887766432222222221 222332222210 00 01223334444556777777788
Q ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHhcccchhHHHHHHHHHHhhc
Q 009970 108 LCTVGSVYIKSKE-APAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQIS 154 (521)
Q Consensus 108 mITVG~~yi~~~~-~p~~eILkDLvEMcRGVQhPlRGLFLR~YL~q~~ 154 (521)
+...|.+|.+.++ ..+.+.++.-+++++...+|..-.-.+..+....
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 197 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLE 197 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcccchh
Confidence 8999999999987 4778889999999999999988777777777653
No 10
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=18.39 E-value=8.5e+02 Score=28.44 Aligned_cols=134 Identities=10% Similarity=0.157 Sum_probs=77.4
Q ss_pred chhhHHHHHHHh--cCCcchhhHhHhHh--Hhcc-C--chhhhhhHHHHHhhcccCCCC-C---------CHHHHHHHHH
Q 009970 237 TVLPRVLEQVVN--CKDEIAQCYLMDCI--IQVF-P--DEYHLQTLEILLGAFPQLQPS-V---------DIKTVLSRLM 299 (521)
Q Consensus 237 ~iLP~iLeqIv~--C~D~lAQeYLmd~I--IQvF-P--dEfHL~TL~~lL~a~~~l~~~-V---------~v~~Il~~Li 299 (521)
.++|.+++.+++ ..|+....-.+.|+ .-.| - ++|-..-|+.+|+++...-++ + ++..--.+.+
T Consensus 529 ~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al 608 (1204)
T 3a6p_A 529 NDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSI 608 (1204)
T ss_dssp HHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHH
Confidence 367888888774 56776555555554 2222 1 123333344444444321111 1 3556666667
Q ss_pred HHHHhhhhhccCCCchhhchHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHhhhHhcCCC--cchHHHHHHHHHHHh
Q 009970 300 ERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDR--LDYADQVLGACVKKL 377 (521)
Q Consensus 300 ~RL~~y~~~~~~~~~~~~~~~lF~~f~~~~~~l~~~~~~l~l~~~i~l~~sll~l~l~~yp~~--~~~vd~il~~~~~~l 377 (521)
.||+.-... . -...|+.+.+++..+......++-.+.+.++.++.-++-.+-|+. ..++..++.-+.+.+
T Consensus 609 ~~L~~~~~~------~--L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w 680 (1204)
T 3a6p_A 609 IKMCRDYPQ------L--VLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIW 680 (1204)
T ss_dssp HHHHHHCHH------H--HGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhH------H--HHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 777642221 1 235677788888888765333888999999999988865544432 444666777666665
Q ss_pred c
Q 009970 378 S 378 (521)
Q Consensus 378 ~ 378 (521)
.
T Consensus 681 ~ 681 (1204)
T 3a6p_A 681 L 681 (1204)
T ss_dssp S
T ss_pred c
Confidence 4
Done!