Query 009970
Match_columns 521
No_of_seqs 113 out of 197
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 17:00:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009970.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009970hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w53a_ a.186.1.2 (A:) Phospho 39.5 44 0.0032 25.5 7.1 55 319-379 25-79 (84)
2 d1rqga1 a.27.1.1 (A:397-606) M 27.8 1.2E+02 0.0089 25.5 9.2 104 295-398 4-125 (210)
3 d1pfva1 a.27.1.1 (A:389-550) M 27.3 1E+02 0.0074 25.1 8.2 106 295-400 1-122 (162)
4 d1orja_ a.24.19.1 (A:) Flagell 17.7 1.6E+02 0.012 23.2 7.2 54 4-62 16-76 (126)
5 d1ldda_ a.4.5.34 (A:) Anaphase 15.0 70 0.0051 23.8 3.8 30 322-351 6-35 (74)
6 d1c1ka_ a.120.1.1 (A:) gene 59 12.6 50 0.0036 29.4 2.7 21 172-192 68-88 (217)
7 d2daha1 a.5.2.1 (A:8-48) Ubiqu 12.6 47 0.0034 22.0 1.9 15 168-182 27-41 (41)
8 d1t3wa_ a.236.1.1 (A:) DNA pri 11.7 38 0.0028 27.1 1.4 86 122-216 34-129 (134)
9 d2dnaa1 a.5.2.1 (A:12-61) Ubiq 10.8 54 0.0039 22.6 1.8 16 168-183 33-48 (50)
10 d1vh6a_ a.24.19.1 (A:) Flagell 10.3 1.8E+02 0.013 21.9 5.1 48 4-52 2-49 (102)
No 1
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=39.52 E-value=44 Score=25.55 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHhhhHhcCCCcchHHHHHHHHHHHhcc
Q 009970 319 VEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSG 379 (521)
Q Consensus 319 ~~lF~~f~~~~~~l~~~~~~l~l~~~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~ 379 (521)
..++ ...++-.++++. +++++|++++..+.+ ...+|+..+.+-.-|.+..+.+.+
T Consensus 25 ~~Ly-~~~~fsre~iek--~IsPEeIV~iHk~~l---~el~~~~~e~v~~Sfd~LlEVm~g 79 (84)
T d1w53a_ 25 TSLY-QAQKFSRKTIEH--QIPPEEIISIHRKVL---KELYPSLPEDVFHSLDFLIEVMIG 79 (84)
T ss_dssp HHHH-HHHHHHHHHHHT--TCCHHHHHHHHHHHH---HHHCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHc--CCCHHHHHHHHHHHH---HHHCCCChHHHHHHHHHHHHHHHH
Confidence 3455 677777888886 799999999999988 567888778887777777776654
No 2
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Probab=27.81 E-value=1.2e+02 Score=25.53 Aligned_cols=104 Identities=19% Similarity=0.202 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhhhhccC-CCch-----hhchHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHhhhHh---------c
Q 009970 295 LSRLMERLSNYAASSTE-VLPE-----FLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHV---------H 359 (521)
Q Consensus 295 l~~Li~RL~~y~~~~~~-~~~~-----~~~~~lF~~f~~~~~~l~~~~~~l~l~~~i~l~~sll~l~l~~---------y 359 (521)
+.+|+.|-.+|+.+.-+ .+|+ ..+..++..+.+.+.++.+.-....+.+.+...-++...+-++ +
T Consensus 4 lGNl~~Rv~~~i~k~~~g~vp~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~yi~~~~PW~l~ 83 (210)
T d1rqga1 4 LGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRYFDHKQPWKTA 83 (210)
T ss_dssp HHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 67888999888876433 3332 1245567667776666665544567888877777777765433 3
Q ss_pred CCCcchHHHHHHHHHHHhccCC---CCCChHHHHHHHHHHHc
Q 009970 360 PDRLDYADQVLGACVKKLSGEG---KLEDNRATKQIVALLSA 398 (521)
Q Consensus 360 p~~~~~vd~il~~~~~~l~~~~---~~~~~~~~~~l~~lL~~ 398 (521)
.++.+....++..+.+.+.... .+--|.....+...|-.
T Consensus 84 k~~~~~~~~vl~~~~~~~~~l~ilL~PfmP~~a~~i~~~Lg~ 125 (210)
T d1rqga1 84 KEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNL 125 (210)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCC
Confidence 4445566777777777664432 12233444555555543
No 3
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}
Probab=27.34 E-value=1e+02 Score=25.14 Aligned_cols=106 Identities=15% Similarity=0.092 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhhhhccC-CCch-hhchHHHHHHHHHHHHHHhhCCCCChhhHHHHHHHHHHhhhHhc-----------CC
Q 009970 295 LSRLMERLSNYAASSTE-VLPE-FLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVH-----------PD 361 (521)
Q Consensus 295 l~~Li~RL~~y~~~~~~-~~~~-~~~~~lF~~f~~~~~~l~~~~~~l~l~~~i~l~~sll~l~l~~y-----------p~ 361 (521)
+++|+.|-.+|+.+.-+ .+|+ ..+.++.+.+.+...++.+.-....+.+.+...-++++.+-++. +.
T Consensus 1 ~~NL~~R~~~~i~k~~~g~vp~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~al~~i~~~~~~~Nkyi~~~~PWkl~k~~~ 80 (162)
T d1pfva1 1 VVNLASRNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAPWVVAKQEG 80 (162)
T ss_dssp CHHHHHHHHHHHHHHSTTBCCSSCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTSTT
T ss_pred CcchHHHHHHHHHHhcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence 46899999999887543 3343 12456777676666666554445567666666666665444432 22
Q ss_pred CcchHHHHHHHHHHHhccCC---CCCChHHHHHHHHHHHchh
Q 009970 362 RLDYADQVLGACVKKLSGEG---KLEDNRATKQIVALLSAPL 400 (521)
Q Consensus 362 ~~~~vd~il~~~~~~l~~~~---~~~~~~~~~~l~~lL~~pl 400 (521)
+-+.+..++..+.+.+...+ .+--|.....+.+.|..+.
T Consensus 81 ~~~~~~~vl~~~~~~lr~~~~lL~P~mP~~s~ki~~~L~~~~ 122 (162)
T d1pfva1 81 RDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTEL 122 (162)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHTSCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCC
Confidence 23456677777776654433 2223455555666666654
No 4
>d1orja_ a.24.19.1 (A:) Flagellar export chaperone FliS {Aquifex aeolicus [TaxId: 63363]}
Probab=17.67 E-value=1.6e+02 Score=23.15 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=34.6
Q ss_pred CChhHHHHHHHHHHHHHHHhHHHHHHHhccccH-------HHHHHHHHHHHHhhhcCCCCCchhhH
Q 009970 4 DGVEDEEKWLAAGIAGLQQNAFYMHRALDSNNL-------RDALKYSAQMLSELRTSKLSPQKYYQ 62 (521)
Q Consensus 4 ~~~~~q~k~L~ea~~~Vk~qs~~Mkr~ld~~~l-------~~ALkhas~mL~ELRts~LsPk~YYe 62 (521)
+|.+--.-+.|.++..++.-. .++++++. .+++.+|..++.+|+. +|.|..=+|
T Consensus 16 sP~~Li~mLyd~~i~~l~~a~----~a~~~~d~~~~~~~~~~~l~ka~~Ii~~L~~-~Ld~e~Gge 76 (126)
T d1orja_ 16 TPLEQIILLYDKAIECLERAI----EIYDQVNELEKRKEFVENIDRVYDIISALKS-FLDHEKGKE 76 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HTGGGTTSHHHHHHHHHHHHHHHHHHHHHHH-TCCTTTSHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH----HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH-hcccccchH
Confidence 344444455677777776653 34444432 3578999999999987 777765443
No 5
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.97 E-value=70 Score=23.76 Aligned_cols=30 Identities=7% Similarity=0.030 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhCCCCChhhHHHHHHHH
Q 009970 322 FSKLNNAIGKVIEAQADMPILGAVTLYSSL 351 (521)
Q Consensus 322 F~~f~~~~~~l~~~~~~l~l~~~i~l~~sl 351 (521)
.++||.+|..+....+.+|++.+-.++.-+
T Consensus 6 lq~~w~yI~gMLtN~~slpleRIh~mLkmf 35 (74)
T d1ldda_ 6 LQRSLPFIEGMLTNLGAMKLHKIHSFLKIT 35 (74)
T ss_dssp HHHHHHHHHHHHHHHCSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 467999999999888899999887776544
No 6
>d1c1ka_ a.120.1.1 (A:) gene 59 helicase assembly protein {Bacteriophage T4 [TaxId: 10665]}
Probab=12.62 E-value=50 Score=29.40 Aligned_cols=21 Identities=10% Similarity=0.392 Sum_probs=18.1
Q ss_pred hhhhHHHHHHhHHHHHHHHHH
Q 009970 172 VNDAMEFVLQNFTEMNKLWVR 192 (521)
Q Consensus 172 ~~dsi~Fll~NF~EMNKLWVR 192 (521)
-.|-++|.+.||+.-++.||.
T Consensus 68 ~~ei~dffvaNFi~~~~~WIg 88 (217)
T d1c1ka_ 68 LKELALIFISNLVANQDAWIG 88 (217)
T ss_dssp HHHHHHHHHHHHHHCHHHHSS
T ss_pred hhhHHHHHHHHhhcCCCChhH
Confidence 457889999999999999963
No 7
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.57 E-value=47 Score=21.98 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=13.2
Q ss_pred CCCChhhhHHHHHHh
Q 009970 168 DADTVNDAMEFVLQN 182 (521)
Q Consensus 168 ~~g~~~dsi~Fll~N 182 (521)
.+|||+-||++|++|
T Consensus 27 t~Gdv~~Aie~Ll~~ 41 (41)
T d2daha1 27 TGGDVDAAVEKLRQS 41 (41)
T ss_dssp HTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhC
Confidence 569999999999875
No 8
>d1t3wa_ a.236.1.1 (A:) DNA primase DnaG, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.69 E-value=38 Score=27.06 Aligned_cols=86 Identities=22% Similarity=0.327 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHhcccchhHHHHHHHH--------HHhhccccCCCCCCCCCCCCCChhhhHHHHHHhHH--HHHHHHH
Q 009970 122 PAKDVLKDLVEMCRGIQHPVRGLFLRSY--------LSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFT--EMNKLWV 191 (521)
Q Consensus 122 p~~eILkDLvEMcRGVQhPlRGLFLR~Y--------L~q~~k~~LPd~~~~~~~~~g~~~dsi~Fll~NF~--EMNKLWV 191 (521)
|--++|..|++.||.--+..-|-.|=+| |.+.+..-.+.+. ++....+.|++.++...+. +++.|=-
T Consensus 34 ~~~~lL~~L~~~~~~~p~~~t~~Lle~~r~t~~~~~L~~La~~e~~~~~---~~~~~ef~d~l~~l~~~~~~~~~~~L~~ 110 (134)
T d1t3wa_ 34 PGLGLFRELVNTCLSQPGLTTGQLLEHYRGTNNAATLEKLSMWDDIADK---NIAEQTFTDSLNHMFDSLLELRQEELIA 110 (134)
T ss_dssp TTHHHHHHHHHHHHTSTTCCHHHHHHTTCSGGGHHHHHHHHHHHHHHHH---HHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhCCCCCHHHHHHHHcCChHHHHHHHHHhccccCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3346677777777753333334333333 3333321111110 0112358888887776663 4555555
Q ss_pred HHhccCCChhhhhhHHHHHHHHHHh
Q 009970 192 RMQHQGPAREKDKREKERSELRDLV 216 (521)
Q Consensus 192 RlQhqg~~rer~~R~~ER~eL~iLV 216 (521)
|....| .. ..||+||+-|+
T Consensus 111 k~~~~~-Lt-----~eEk~eL~~L~ 129 (134)
T d1t3wa_ 111 RERTHG-LS-----NEERLELWTLN 129 (134)
T ss_dssp HHTTTC-CC-----HHHHHHHHHHH
T ss_pred hhccCC-CC-----HHHHHHHHHHH
Confidence 554323 32 35566666543
No 9
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.81 E-value=54 Score=22.65 Aligned_cols=16 Identities=13% Similarity=0.011 Sum_probs=13.9
Q ss_pred CCCChhhhHHHHHHhH
Q 009970 168 DADTVNDAMEFVLQNF 183 (521)
Q Consensus 168 ~~g~~~dsi~Fll~NF 183 (521)
.+|||+-||++|+.|.
T Consensus 33 t~GdV~~Aie~Ll~~~ 48 (50)
T d2dnaa1 33 TDGDTNAAIYKLKSSQ 48 (50)
T ss_dssp TTSCHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHhcC
Confidence 5699999999999773
No 10
>d1vh6a_ a.24.19.1 (A:) Flagellar export chaperone FliS {Bacillus subtilis [TaxId: 1423]}
Probab=10.27 E-value=1.8e+02 Score=21.86 Aligned_cols=48 Identities=13% Similarity=0.016 Sum_probs=32.5
Q ss_pred CChhHHHHHHHHHHHHHHHhHHHHHHHhccccHHHHHHHHHHHHHhhhc
Q 009970 4 DGVEDEEKWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRT 52 (521)
Q Consensus 4 ~~~~~q~k~L~ea~~~Vk~qs~~Mkr~ld~~~l~~ALkhas~mL~ELRt 52 (521)
||.+=-.-+.+.++..+++-...|++ =|..+-.+++++|..++.+|+.
T Consensus 2 sP~~Li~mLyd~~i~~l~~a~~ai~~-~d~~~~~~~~~ka~~Ii~~L~~ 49 (102)
T d1vh6a_ 2 TPGELTLMLYNGCLKFIRLAAQAIEN-DDMERKNENLIKAQNIIQELNF 49 (102)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHh
Confidence 45555666788888888865554443 1223445688889999999976
Done!