Query 009971
Match_columns 521
No_of_seqs 302 out of 2270
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 19:30:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0448 GlgC ADP-glucose pyrop 100.0 9.8E-70 2.1E-74 543.6 34.6 387 86-520 2-392 (393)
2 PLN02241 glucose-1-phosphate a 100.0 8.8E-66 1.9E-70 546.2 45.8 433 87-521 1-436 (436)
3 KOG1322 GDP-mannose pyrophosph 100.0 3.3E-67 7.1E-72 506.8 31.3 365 84-516 5-371 (371)
4 PRK02862 glgC glucose-1-phosph 100.0 3.2E-62 6.9E-67 517.7 43.9 429 87-521 1-429 (429)
5 PRK05293 glgC glucose-1-phosph 100.0 1.1E-55 2.5E-60 461.9 40.5 375 87-521 1-379 (380)
6 PRK00844 glgC glucose-1-phosph 100.0 3.4E-54 7.3E-59 454.1 42.1 385 86-515 2-407 (407)
7 PRK00725 glgC glucose-1-phosph 100.0 5.5E-54 1.2E-58 454.3 41.1 390 85-516 11-420 (425)
8 COG1208 GCD1 Nucleoside-diphos 100.0 7.3E-50 1.6E-54 412.2 38.2 353 89-521 1-357 (358)
9 TIGR02091 glgC glucose-1-phosp 100.0 6.6E-49 1.4E-53 408.1 37.2 356 92-486 1-361 (361)
10 TIGR02092 glgD glucose-1-phosp 100.0 4E-49 8.7E-54 410.9 35.4 350 89-486 2-355 (369)
11 COG1207 GlmU N-acetylglucosami 100.0 4.2E-47 9.1E-52 379.9 32.8 385 88-521 1-430 (460)
12 TIGR01208 rmlA_long glucose-1- 100.0 4.2E-45 9E-50 378.5 36.3 332 91-485 1-338 (353)
13 PRK14355 glmU bifunctional N-a 100.0 1.2E-43 2.6E-48 380.0 37.3 392 87-521 1-430 (459)
14 PRK14352 glmU bifunctional N-a 100.0 3.8E-43 8.3E-48 378.1 37.8 389 88-521 3-432 (482)
15 PRK14358 glmU bifunctional N-a 100.0 3.8E-42 8.3E-47 369.4 34.9 385 88-521 6-432 (481)
16 TIGR01173 glmU UDP-N-acetylglu 100.0 6.7E-42 1.4E-46 365.8 35.1 382 90-521 1-423 (451)
17 PRK09451 glmU bifunctional N-a 100.0 3.9E-42 8.5E-47 368.1 33.3 385 87-521 3-427 (456)
18 PRK14359 glmU bifunctional N-a 100.0 1.6E-41 3.5E-46 360.8 35.3 376 88-521 1-400 (430)
19 PRK14356 glmU bifunctional N-a 100.0 6.2E-41 1.3E-45 358.9 37.6 383 87-521 3-431 (456)
20 PRK14353 glmU bifunctional N-a 100.0 8E-41 1.7E-45 357.1 38.3 384 86-521 2-413 (446)
21 KOG1460 GDP-mannose pyrophosph 100.0 1.1E-41 2.3E-46 324.3 24.2 331 88-486 1-357 (407)
22 KOG1461 Translation initiation 100.0 4.1E-41 8.9E-46 349.0 29.2 381 88-521 23-423 (673)
23 PRK14354 glmU bifunctional N-a 100.0 1.2E-39 2.5E-44 349.3 38.1 386 88-521 1-426 (458)
24 PRK14357 glmU bifunctional N-a 100.0 3.6E-39 7.7E-44 344.6 35.0 376 90-521 1-416 (448)
25 PRK14360 glmU bifunctional N-a 100.0 1.8E-38 3.9E-43 339.3 35.9 381 90-521 2-423 (450)
26 KOG1462 Translation initiation 100.0 2E-38 4.3E-43 312.5 21.9 360 86-503 6-412 (433)
27 COG1209 RfbA dTDP-glucose pyro 100.0 4.8E-38 1E-42 299.6 20.9 280 90-428 1-284 (286)
28 PF00483 NTP_transferase: Nucl 100.0 1.6E-37 3.5E-42 305.6 24.3 241 91-365 1-247 (248)
29 TIGR01105 galF UTP-glucose-1-p 100.0 2.4E-36 5.2E-41 303.8 26.7 247 87-364 1-277 (297)
30 cd06428 M1P_guanylylT_A_like_N 100.0 1.5E-35 3.2E-40 293.8 25.3 235 92-363 1-257 (257)
31 PRK10122 GalU regulator GalF; 100.0 4.8E-35 1E-39 295.0 26.6 246 87-364 1-277 (297)
32 cd06425 M1P_guanylylT_B_like_N 100.0 7.4E-35 1.6E-39 284.5 25.7 232 90-364 1-233 (233)
33 PRK15480 glucose-1-phosphate t 100.0 2.3E-34 5E-39 288.8 26.5 236 87-364 1-241 (292)
34 cd02538 G1P_TT_short G1P_TT_sh 100.0 1.2E-33 2.6E-38 277.1 24.9 231 90-363 1-237 (240)
35 cd02541 UGPase_prokaryotic Pro 100.0 1.7E-33 3.7E-38 280.5 24.4 244 90-364 1-265 (267)
36 TIGR02623 G1P_cyt_trans glucos 100.0 2.2E-33 4.8E-38 277.6 24.4 243 91-369 1-250 (254)
37 TIGR01099 galU UTP-glucose-1-p 100.0 3.1E-33 6.8E-38 277.4 23.6 240 90-359 1-260 (260)
38 TIGR01207 rmlA glucose-1-phosp 100.0 4.3E-33 9.3E-38 279.2 24.2 231 91-364 1-237 (286)
39 cd04189 G1P_TT_long G1P_TT_lon 100.0 1.2E-32 2.7E-37 269.0 26.3 233 90-365 1-235 (236)
40 PRK13389 UTP--glucose-1-phosph 100.0 2.9E-32 6.3E-37 275.2 26.1 244 88-364 7-280 (302)
41 cd02524 G1P_cytidylyltransfera 100.0 3.8E-32 8.3E-37 268.7 25.9 244 92-369 1-251 (253)
42 cd06422 NTP_transferase_like_1 100.0 1.4E-32 2.9E-37 266.2 21.7 219 91-359 1-221 (221)
43 cd06915 NTP_transferase_WcbM_l 100.0 2E-31 4.3E-36 257.5 23.9 223 92-360 1-223 (223)
44 cd04181 NTP_transferase NTP_tr 100.0 7E-31 1.5E-35 252.8 24.2 217 92-351 1-217 (217)
45 cd06426 NTP_transferase_like_2 100.0 7.9E-31 1.7E-35 253.4 24.4 220 92-360 1-220 (220)
46 COG1210 GalU UDP-glucose pyrop 100.0 6.9E-30 1.5E-34 243.9 19.3 249 87-366 2-272 (291)
47 cd04197 eIF-2B_epsilon_N The N 100.0 1.1E-29 2.4E-34 245.4 17.0 205 90-309 1-217 (217)
48 cd02508 ADP_Glucose_PP ADP-glu 100.0 5.3E-29 1.2E-33 237.5 20.8 199 92-350 1-200 (200)
49 cd04183 GT2_BcE_like GT2_BcbE_ 100.0 2.2E-28 4.7E-33 238.3 22.9 223 92-356 1-230 (231)
50 cd02523 PC_cytidylyltransferas 100.0 1.8E-28 4E-33 238.6 21.3 223 92-360 1-229 (229)
51 cd02509 GDP-M1P_Guanylyltransf 99.9 1.4E-26 3.1E-31 231.2 20.2 234 90-355 1-273 (274)
52 cd02540 GT2_GlmU_N_bac N-termi 99.9 4.1E-25 8.9E-30 214.7 23.9 222 92-356 1-229 (229)
53 cd02507 eIF-2B_gamma_N_like Th 99.9 3.9E-26 8.4E-31 220.5 14.7 204 90-309 1-216 (216)
54 cd04198 eIF-2B_gamma_N The N-t 99.9 6.6E-25 1.4E-29 211.6 16.1 201 90-309 1-214 (214)
55 TIGR01479 GMP_PMI mannose-1-ph 99.9 7.7E-24 1.7E-28 226.2 23.4 240 90-360 1-281 (468)
56 PRK05450 3-deoxy-manno-octulos 99.9 5.2E-23 1.1E-27 202.3 23.9 235 88-363 1-244 (245)
57 cd02517 CMP-KDO-Synthetase CMP 99.9 6.4E-22 1.4E-26 193.8 23.5 226 90-361 2-238 (239)
58 COG1213 Predicted sugar nucleo 99.9 1.1E-22 2.5E-27 191.2 15.7 224 87-365 1-230 (239)
59 PRK13368 3-deoxy-manno-octulos 99.9 6.8E-21 1.5E-25 186.4 22.4 226 89-362 2-237 (238)
60 PRK15460 cpsB mannose-1-phosph 99.9 1.7E-20 3.8E-25 198.9 20.0 242 88-360 4-290 (478)
61 COG0836 {ManC} Mannose-1-phosp 99.8 1.9E-19 4.1E-24 176.3 21.0 243 89-361 1-283 (333)
62 PLN02917 CMP-KDO synthetase 99.8 3.2E-17 7E-22 164.9 22.0 236 88-366 46-290 (293)
63 COG4750 LicC CTP:phosphocholin 99.7 3.8E-17 8.2E-22 147.8 14.5 219 90-364 1-226 (231)
64 PRK00155 ispD 2-C-methyl-D-ery 99.7 9.3E-16 2E-20 149.1 19.0 219 87-364 1-223 (227)
65 TIGR00453 ispD 2-C-methyl-D-er 99.7 1.2E-15 2.5E-20 147.3 18.9 211 92-362 2-216 (217)
66 cd02516 CDP-ME_synthetase CDP- 99.7 1.6E-15 3.4E-20 146.3 18.1 213 91-358 2-217 (218)
67 TIGR00466 kdsB 3-deoxy-D-manno 99.7 8.8E-15 1.9E-19 143.3 22.1 229 92-356 2-237 (238)
68 PRK09382 ispDF bifunctional 2- 99.7 4.9E-15 1.1E-19 153.6 21.3 209 87-365 3-214 (378)
69 PRK13385 2-C-methyl-D-erythrit 99.6 3.2E-14 7E-19 138.6 18.5 219 89-364 2-224 (230)
70 cd02513 CMP-NeuAc_Synthase CMP 99.6 1.8E-13 3.8E-18 132.4 20.4 215 89-362 1-222 (223)
71 PF12804 NTP_transf_3: MobA-li 99.6 1.8E-14 3.8E-19 132.1 12.6 121 92-240 1-123 (160)
72 TIGR00454 conserved hypothetic 99.6 2.5E-14 5.4E-19 134.3 13.4 124 90-240 1-126 (183)
73 TIGR03310 matur_ygfJ molybdenu 99.6 1.2E-13 2.6E-18 129.9 17.3 119 92-235 2-122 (188)
74 PLN02728 2-C-methyl-D-erythrit 99.5 5.7E-13 1.2E-17 131.1 19.9 222 84-365 19-246 (252)
75 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.5 2.7E-14 6E-19 138.6 9.7 97 325-432 31-132 (231)
76 cd05636 LbH_G1P_TT_C_like Puta 99.5 1.3E-13 2.8E-18 127.2 13.1 123 379-521 12-162 (163)
77 COG2068 Uncharacterized MobA-r 99.5 2.4E-12 5.2E-17 119.5 19.0 192 87-364 3-198 (199)
78 PRK00317 mobA molybdopterin-gu 99.5 1.4E-12 3.1E-17 123.5 17.3 115 87-231 1-117 (193)
79 PRK05289 UDP-N-acetylglucosami 99.5 2.3E-13 5.1E-18 135.0 12.3 140 374-521 10-174 (262)
80 cd03353 LbH_GlmU_C N-acetyl-gl 99.5 4.4E-13 9.5E-18 127.1 13.5 142 376-521 25-177 (193)
81 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.5 3.9E-13 8.5E-18 133.0 13.7 140 374-521 7-171 (254)
82 COG1044 LpxD UDP-3-O-[3-hydrox 99.5 8.7E-13 1.9E-17 130.9 15.6 116 400-519 147-285 (338)
83 cd04182 GT_2_like_f GT_2_like_ 99.5 5E-13 1.1E-17 125.1 13.3 120 90-234 1-122 (186)
84 TIGR01853 lipid_A_lpxD UDP-3-O 99.5 8.8E-13 1.9E-17 134.5 15.6 63 459-521 218-286 (324)
85 PRK12461 UDP-N-acetylglucosami 99.5 6.3E-13 1.4E-17 131.0 13.7 140 374-521 7-170 (255)
86 COG1212 KdsB CMP-2-keto-3-deox 99.5 5.9E-12 1.3E-16 117.7 18.9 235 88-365 2-244 (247)
87 TIGR03584 PseF pseudaminic aci 99.5 9.5E-12 2.1E-16 120.5 21.1 214 92-363 2-220 (222)
88 PRK02726 molybdopterin-guanine 99.4 6.1E-12 1.3E-16 120.0 17.7 116 85-230 3-120 (200)
89 cd04651 LbH_G1P_AT_C Glucose-1 99.4 1.6E-12 3.5E-17 110.6 11.7 98 395-515 7-104 (104)
90 TIGR01852 lipid_A_lpxA acyl-[a 99.4 2.1E-12 4.6E-17 127.7 13.9 63 459-521 102-170 (254)
91 PRK00892 lpxD UDP-3-O-[3-hydro 99.4 4.6E-12 9.9E-17 130.8 15.8 63 459-521 226-294 (343)
92 COG1043 LpxA Acyl-[acyl carrie 99.4 4.7E-12 1E-16 119.1 13.5 142 374-521 11-175 (260)
93 COG1211 IspD 4-diphosphocytidy 99.4 5.1E-11 1.1E-15 114.3 20.9 222 87-364 2-227 (230)
94 PF01128 IspD: 2-C-methyl-D-er 99.4 2.6E-11 5.5E-16 116.8 18.1 215 90-363 1-219 (221)
95 COG2266 GTP:adenosylcobinamide 99.4 7.1E-12 1.5E-16 113.2 12.5 110 90-229 1-112 (177)
96 TIGR03202 pucB xanthine dehydr 99.3 1.6E-11 3.4E-16 116.1 14.0 125 91-235 2-128 (190)
97 cd02503 MobA MobA catalyzes th 99.3 8.4E-12 1.8E-16 116.7 11.6 113 90-235 1-115 (181)
98 PRK00560 molybdopterin-guanine 99.3 3.7E-11 8.1E-16 114.2 16.1 106 85-224 4-112 (196)
99 TIGR02287 PaaY phenylacetic ac 99.3 1.4E-11 3E-16 116.3 12.4 117 379-520 9-130 (192)
100 cd04646 LbH_Dynactin_6 Dynacti 99.3 2.4E-11 5.2E-16 112.1 12.9 111 399-518 16-131 (164)
101 PRK14489 putative bifunctional 99.3 7.4E-11 1.6E-15 122.7 17.6 120 87-234 3-124 (366)
102 COG1044 LpxD UDP-3-O-[3-hydrox 99.3 1.9E-11 4.1E-16 121.5 12.1 143 374-520 107-274 (338)
103 cd03352 LbH_LpxD UDP-3-O-acyl- 99.3 3.9E-11 8.4E-16 114.8 13.4 144 374-521 9-183 (205)
104 cd04745 LbH_paaY_like paaY-lik 99.3 4.3E-11 9.2E-16 109.4 13.0 96 399-520 17-122 (155)
105 PLN02296 carbonate dehydratase 99.3 2.4E-11 5.2E-16 120.2 12.1 128 374-520 48-180 (269)
106 cd03353 LbH_GlmU_C N-acetyl-gl 99.3 4.1E-11 8.9E-16 113.6 12.8 101 374-481 11-114 (193)
107 TIGR02665 molyb_mobA molybdopt 99.3 3.9E-11 8.4E-16 112.8 11.6 118 90-235 1-120 (186)
108 COG0663 PaaY Carbonic anhydras 99.3 5.4E-11 1.2E-15 108.3 11.5 118 378-520 11-133 (176)
109 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.2 6.3E-11 1.4E-15 117.2 12.6 133 376-511 21-173 (254)
110 cd02518 GT2_SpsF SpsF is a gly 99.2 7.9E-10 1.7E-14 107.9 20.0 115 92-236 2-121 (233)
111 PRK12461 UDP-N-acetylglucosami 99.2 5.9E-11 1.3E-15 117.0 11.9 117 401-520 24-151 (255)
112 cd03352 LbH_LpxD UDP-3-O-acyl- 99.2 1.3E-10 2.8E-15 111.2 13.3 143 375-521 4-165 (205)
113 PRK13627 carnitine operon prot 99.2 9E-11 1.9E-15 111.1 12.0 101 399-520 27-132 (196)
114 TIGR01173 glmU UDP-N-acetylglu 99.2 5.3E-11 1.1E-15 127.5 11.7 108 395-505 308-420 (451)
115 TIGR03308 phn_thr-fam phosphon 99.2 8.3E-11 1.8E-15 112.2 10.9 14 507-520 127-140 (204)
116 PLN02472 uncharacterized prote 99.2 1.6E-10 3.4E-15 112.9 13.0 125 377-520 58-187 (246)
117 TIGR01852 lipid_A_lpxA acyl-[a 99.2 1.4E-10 3E-15 114.8 12.7 46 460-505 121-167 (254)
118 cd04652 LbH_eIF2B_gamma_C eIF- 99.2 1E-10 2.3E-15 94.7 9.7 65 403-486 2-67 (81)
119 PRK00892 lpxD UDP-3-O-[3-hydro 99.2 1.5E-10 3.2E-15 119.6 13.0 68 450-521 204-276 (343)
120 PRK05289 UDP-N-acetylglucosami 99.2 1.4E-10 3.1E-15 115.1 11.7 37 401-437 27-65 (262)
121 TIGR01853 lipid_A_lpxD UDP-3-O 99.2 2.2E-10 4.7E-15 117.0 13.1 61 460-521 203-268 (324)
122 PRK14490 putative bifunctional 99.2 9.6E-10 2.1E-14 114.7 17.6 109 88-227 173-283 (369)
123 COG1207 GlmU N-acetylglucosami 99.1 9.7E-11 2.1E-15 119.0 8.8 114 400-519 268-385 (460)
124 cd05636 LbH_G1P_TT_C_like Puta 99.1 4E-10 8.7E-15 103.9 11.5 66 374-439 19-93 (163)
125 cd04650 LbH_FBP Ferripyochelin 99.1 8.5E-10 1.8E-14 100.7 13.1 101 399-514 17-122 (154)
126 cd00710 LbH_gamma_CA Gamma car 99.1 8.1E-10 1.7E-14 102.3 13.0 120 381-521 5-131 (167)
127 PRK14356 glmU bifunctional N-a 99.1 4.5E-10 9.8E-15 120.6 12.7 33 476-508 399-431 (456)
128 cd04645 LbH_gamma_CA_like Gamm 99.1 1.3E-09 2.8E-14 99.4 13.4 95 399-519 16-120 (153)
129 PRK09451 glmU bifunctional N-a 99.1 5E-10 1.1E-14 120.2 11.1 112 395-510 312-428 (456)
130 PRK11830 dapD 2,3,4,5-tetrahyd 99.1 6.5E-10 1.4E-14 109.6 10.8 27 460-486 178-205 (272)
131 COG0746 MobA Molybdopterin-gua 99.1 9.6E-10 2.1E-14 103.7 11.4 113 87-232 2-116 (192)
132 cd03356 LbH_G1P_AT_C_like Left 99.1 1E-09 2.3E-14 88.2 9.9 65 403-486 2-67 (79)
133 PRK13627 carnitine operon prot 99.1 8.2E-10 1.8E-14 104.6 10.3 99 403-521 13-121 (196)
134 cd04745 LbH_paaY_like paaY-lik 99.1 1.3E-09 2.8E-14 99.7 11.3 86 416-521 18-111 (155)
135 PLN02296 carbonate dehydratase 99.0 1.3E-09 2.9E-14 107.9 11.7 103 402-521 54-169 (269)
136 cd04180 UGPase_euk_like Eukary 99.0 1.9E-08 4.2E-13 99.9 20.0 213 91-314 2-241 (266)
137 KOG1461 Translation initiation 99.0 3.4E-10 7.4E-15 119.4 7.7 92 376-486 325-419 (673)
138 cd05787 LbH_eIF2B_epsilon eIF- 99.0 1.3E-09 2.8E-14 87.4 9.5 65 403-486 2-67 (79)
139 PRK14500 putative bifunctional 99.0 7.1E-09 1.5E-13 106.5 17.3 109 89-228 160-270 (346)
140 cd04652 LbH_eIF2B_gamma_C eIF- 99.0 1E-09 2.3E-14 88.8 8.9 68 396-482 12-80 (81)
141 TIGR00965 dapD 2,3,4,5-tetrahy 99.0 1.4E-09 3.1E-14 106.3 11.1 32 401-436 130-161 (269)
142 PRK14352 glmU bifunctional N-a 99.0 1.2E-09 2.5E-14 118.2 11.6 108 389-505 311-429 (482)
143 TIGR02287 PaaY phenylacetic ac 99.0 1.5E-09 3.3E-14 102.5 10.5 99 403-521 11-119 (192)
144 PRK14358 glmU bifunctional N-a 99.0 1.1E-09 2.4E-14 118.2 11.0 119 399-520 269-413 (481)
145 cd03350 LbH_THP_succinylT 2,3, 99.0 3.1E-09 6.8E-14 95.3 11.9 33 400-432 31-65 (139)
146 cd03359 LbH_Dynactin_5 Dynacti 99.0 4.5E-09 9.8E-14 96.7 13.0 110 400-516 21-135 (161)
147 TIGR03308 phn_thr-fam phosphon 99.0 2.2E-09 4.8E-14 102.4 10.7 59 374-433 10-70 (204)
148 cd04651 LbH_G1P_AT_C Glucose-1 99.0 3.8E-09 8.2E-14 89.8 10.8 55 412-486 8-62 (104)
149 COG0663 PaaY Carbonic anhydras 99.0 2.5E-09 5.5E-14 97.4 10.3 102 403-521 14-122 (176)
150 cd03360 LbH_AT_putative Putati 99.0 2.2E-09 4.8E-14 100.8 10.0 46 460-505 134-180 (197)
151 PRK14355 glmU bifunctional N-a 99.0 2.5E-09 5.5E-14 114.9 11.7 69 399-486 267-337 (459)
152 cd04646 LbH_Dynactin_6 Dynacti 99.0 3.1E-09 6.6E-14 98.1 10.5 59 460-520 68-127 (164)
153 PRK14357 glmU bifunctional N-a 99.0 2.2E-09 4.8E-14 114.9 10.7 118 400-520 255-397 (448)
154 cd05824 LbH_M1P_guanylylT_C Ma 99.0 4.5E-09 9.7E-14 84.8 9.6 62 402-486 7-68 (80)
155 PRK14354 glmU bifunctional N-a 98.9 4.2E-09 9.1E-14 113.2 11.9 121 387-511 303-428 (458)
156 TIGR00965 dapD 2,3,4,5-tetrahy 98.9 5.4E-09 1.2E-13 102.3 11.2 51 384-438 100-151 (269)
157 PRK11830 dapD 2,3,4,5-tetrahyd 98.9 1E-08 2.2E-13 101.2 12.9 36 470-505 177-212 (272)
158 cd04645 LbH_gamma_CA_like Gamm 98.9 6.3E-09 1.4E-13 94.9 10.7 88 416-520 17-109 (153)
159 PLN02472 uncharacterized prote 98.9 6.4E-09 1.4E-13 101.7 11.4 99 403-521 62-176 (246)
160 cd04193 UDPGlcNAc_PPase UDPGlc 98.9 8E-08 1.7E-12 97.9 19.7 212 88-314 14-256 (323)
161 PRK14353 glmU bifunctional N-a 98.9 6.5E-09 1.4E-13 111.3 12.4 128 375-505 277-410 (446)
162 PRK14360 glmU bifunctional N-a 98.9 3.8E-09 8.2E-14 113.2 10.5 115 388-511 301-425 (450)
163 cd04650 LbH_FBP Ferripyochelin 98.9 1.1E-08 2.3E-13 93.4 11.1 95 402-520 8-110 (154)
164 cd03356 LbH_G1P_AT_C_like Left 98.9 7.8E-09 1.7E-13 83.0 8.6 67 395-480 11-79 (79)
165 TIGR03570 NeuD_NnaD sugar O-ac 98.9 2.1E-08 4.6E-13 94.9 13.1 40 460-505 143-183 (201)
166 cd03350 LbH_THP_succinylT 2,3, 98.9 1.3E-08 2.8E-13 91.3 10.9 38 401-438 26-65 (139)
167 cd03358 LbH_WxcM_N_like WcxM-l 98.9 9.9E-09 2.2E-13 89.1 9.6 68 400-487 16-85 (119)
168 KOG1462 Translation initiation 98.9 3.8E-09 8.1E-14 105.9 7.6 90 379-487 329-420 (433)
169 cd00710 LbH_gamma_CA Gamma car 98.9 1.6E-08 3.4E-13 93.6 11.3 71 401-484 43-114 (167)
170 COG1043 LpxA Acyl-[acyl carrie 98.9 9.1E-09 2E-13 97.2 9.6 133 381-519 6-155 (260)
171 cd05787 LbH_eIF2B_epsilon eIF- 98.9 8.8E-09 1.9E-13 82.5 8.4 78 418-516 1-78 (79)
172 TIGR03570 NeuD_NnaD sugar O-ac 98.9 1.4E-08 3.1E-13 96.1 11.1 23 497-520 163-185 (201)
173 PRK14359 glmU bifunctional N-a 98.9 1.4E-08 3.1E-13 108.1 11.8 117 374-505 267-397 (430)
174 COG1083 NeuA CMP-N-acetylneura 98.8 1.4E-07 3.1E-12 87.9 15.5 220 87-365 1-224 (228)
175 PTZ00339 UDP-N-acetylglucosami 98.8 4E-07 8.6E-12 97.0 20.6 211 88-314 105-351 (482)
176 TIGR03532 DapD_Ac 2,3,4,5-tetr 98.8 2.6E-08 5.6E-13 96.9 10.7 60 374-433 88-151 (231)
177 cd04649 LbH_THP_succinylT_puta 98.8 4.3E-08 9.4E-13 87.1 10.9 26 460-486 81-106 (147)
178 cd05824 LbH_M1P_guanylylT_C Ma 98.7 5.6E-08 1.2E-12 78.4 9.2 63 399-480 16-80 (80)
179 PLN02694 serine O-acetyltransf 98.7 3.6E-08 7.8E-13 97.4 9.1 78 402-485 168-246 (294)
180 PLN02474 UTP--glucose-1-phosph 98.7 5.8E-06 1.3E-10 87.5 26.2 209 87-314 77-309 (469)
181 cd03358 LbH_WxcM_N_like WcxM-l 98.7 5.4E-08 1.2E-12 84.4 8.9 32 474-505 66-97 (119)
182 PRK10502 putative acyl transfe 98.7 8.4E-08 1.8E-12 90.0 9.4 33 401-433 72-108 (182)
183 cd03360 LbH_AT_putative Putati 98.7 3.4E-07 7.4E-12 85.8 13.1 45 461-505 141-186 (197)
184 cd05635 LbH_unknown Uncharacte 98.6 2E-07 4.4E-12 78.7 9.4 66 400-486 29-96 (101)
185 TIGR03536 DapD_gpp 2,3,4,5-tet 98.6 1.9E-07 4.2E-12 92.3 10.3 8 189-196 29-36 (341)
186 cd03359 LbH_Dynactin_5 Dynacti 98.6 3.5E-07 7.5E-12 84.1 11.0 18 416-433 21-38 (161)
187 PRK05293 glgC glucose-1-phosph 98.6 1.3E-07 2.9E-12 99.1 8.6 90 374-484 284-379 (380)
188 cd05635 LbH_unknown Uncharacte 98.6 5.7E-07 1.2E-11 76.0 10.7 67 399-485 10-78 (101)
189 PRK11132 cysE serine acetyltra 98.5 2.7E-07 5.9E-12 91.2 9.1 37 401-439 148-184 (273)
190 PRK09527 lacA galactoside O-ac 98.5 4.6E-07 9.9E-12 86.2 10.0 51 381-433 58-112 (203)
191 PRK09677 putative lipopolysacc 98.5 6.2E-07 1.3E-11 84.9 10.5 33 400-432 49-81 (192)
192 COG2171 DapD Tetrahydrodipicol 98.5 4.1E-07 8.9E-12 87.8 8.9 31 456-486 180-211 (271)
193 TIGR03535 DapD_actino 2,3,4,5- 98.5 6.1E-07 1.3E-11 88.4 9.7 14 507-520 242-255 (319)
194 PLN02357 serine acetyltransfer 98.5 5.1E-07 1.1E-11 91.8 9.2 79 402-486 234-313 (360)
195 cd04647 LbH_MAT_like Maltose O 98.5 7E-07 1.5E-11 76.0 8.8 33 402-434 3-39 (109)
196 TIGR02092 glgD glucose-1-phosp 98.5 6.4E-07 1.4E-11 93.6 10.1 27 459-485 311-337 (369)
197 TIGR01208 rmlA_long glucose-1- 98.5 6.3E-07 1.4E-11 93.0 9.8 100 401-515 249-351 (353)
198 TIGR02091 glgC glucose-1-phosp 98.5 6.2E-07 1.3E-11 93.3 9.5 62 404-485 281-343 (361)
199 cd00208 LbetaH Left-handed par 98.4 6.5E-07 1.4E-11 71.0 7.3 27 494-521 51-77 (78)
200 TIGR01172 cysE serine O-acetyl 98.4 1.3E-06 2.8E-11 80.4 10.1 36 402-439 69-104 (162)
201 cd00897 UGPase_euk Eukaryotic 98.4 3E-05 6.5E-10 78.0 20.5 209 88-315 2-234 (300)
202 cd03357 LbH_MAT_GAT Maltose O- 98.4 1.4E-06 2.9E-11 80.9 9.5 35 400-434 62-100 (169)
203 COG2171 DapD Tetrahydrodipicol 98.4 1.1E-06 2.4E-11 84.8 9.0 109 385-513 109-219 (271)
204 cd04649 LbH_THP_succinylT_puta 98.4 2E-06 4.3E-11 76.6 9.6 16 417-432 26-41 (147)
205 PRK09527 lacA galactoside O-ac 98.4 2.3E-06 5.1E-11 81.4 10.7 30 403-432 58-91 (203)
206 TIGR03536 DapD_gpp 2,3,4,5-tet 98.4 2.2E-06 4.7E-11 85.0 10.6 16 416-431 224-239 (341)
207 PRK00725 glgC glucose-1-phosph 98.4 1.1E-06 2.4E-11 93.5 9.3 54 413-486 324-377 (425)
208 cd00208 LbetaH Left-handed par 98.4 2E-06 4.3E-11 68.2 8.6 68 402-485 2-72 (78)
209 PRK10502 putative acyl transfe 98.4 1.5E-06 3.3E-11 81.5 9.1 33 401-433 52-88 (182)
210 PRK02862 glgC glucose-1-phosph 98.4 1.4E-06 3E-11 92.8 9.9 75 407-502 299-392 (429)
211 PRK10092 maltose O-acetyltrans 98.4 1.7E-06 3.7E-11 81.2 9.2 47 385-433 60-110 (183)
212 COG1045 CysE Serine acetyltran 98.3 1.4E-06 3E-11 80.5 7.8 79 402-486 75-154 (194)
213 PLN02241 glucose-1-phosphate a 98.3 1.6E-06 3.4E-11 92.7 9.2 83 385-486 316-419 (436)
214 PRK11132 cysE serine acetyltra 98.3 2.2E-06 4.7E-11 84.9 9.3 18 416-433 167-184 (273)
215 COG0448 GlgC ADP-glucose pyrop 98.3 2E-06 4.3E-11 87.8 9.1 57 382-439 294-351 (393)
216 cd03357 LbH_MAT_GAT Maltose O- 98.3 6.4E-06 1.4E-10 76.4 11.3 13 493-505 136-148 (169)
217 PLN02739 serine acetyltransfer 98.3 2.3E-06 5E-11 86.4 8.7 78 402-485 213-291 (355)
218 cd03354 LbH_SAT Serine acetylt 98.3 3.5E-06 7.7E-11 71.0 8.2 74 402-505 4-84 (101)
219 cd05825 LbH_wcaF_like wcaF-lik 98.3 4.1E-06 8.8E-11 71.5 8.6 33 401-433 4-40 (107)
220 PRK00844 glgC glucose-1-phosph 98.3 2.6E-06 5.6E-11 90.2 8.9 54 413-486 312-365 (407)
221 PRK09677 putative lipopolysacc 98.3 4.8E-06 1E-10 78.9 9.7 54 381-434 46-103 (192)
222 PLN02694 serine O-acetyltransf 98.3 3.4E-06 7.4E-11 83.6 8.9 79 400-505 160-242 (294)
223 PLN02739 serine acetyltransfer 98.2 2.7E-06 5.8E-11 86.0 8.1 79 400-505 205-287 (355)
224 cd03354 LbH_SAT Serine acetylt 98.2 9.6E-06 2.1E-10 68.3 10.4 27 460-486 62-89 (101)
225 TIGR01172 cysE serine O-acetyl 98.2 5.1E-06 1.1E-10 76.5 9.1 19 416-434 87-105 (162)
226 KOG4042 Dynactin subunit p27/W 98.2 1.9E-06 4.1E-11 75.5 5.5 50 384-433 8-64 (190)
227 PRK10191 putative acyl transfe 98.2 5.8E-06 1.3E-10 74.5 8.7 32 401-432 48-83 (146)
228 COG1208 GCD1 Nucleoside-diphos 98.2 4.6E-06 1E-10 86.6 9.0 63 399-486 278-341 (358)
229 PRK10092 maltose O-acetyltrans 98.2 6.3E-06 1.4E-10 77.3 9.0 31 402-432 69-103 (183)
230 PF02348 CTP_transf_3: Cytidyl 98.2 2.9E-05 6.3E-10 74.6 13.4 175 91-307 1-185 (217)
231 TIGR03535 DapD_actino 2,3,4,5- 98.2 1.9E-05 4.1E-10 78.0 11.8 10 496-505 244-253 (319)
232 PRK10191 putative acyl transfe 98.1 1.7E-05 3.7E-10 71.5 10.3 26 460-485 100-126 (146)
233 PRK13412 fkp bifunctional fuco 98.1 4E-05 8.8E-10 87.5 14.6 217 207-472 154-392 (974)
234 cd03349 LbH_XAT Xenobiotic acy 98.1 1.9E-05 4.2E-10 71.2 9.2 33 402-434 3-39 (145)
235 cd06424 UGGPase UGGPase cataly 98.1 0.00019 4.1E-09 72.6 17.1 214 91-315 2-253 (315)
236 PF07959 Fucokinase: L-fucokin 98.1 6.9E-05 1.5E-09 79.2 14.3 95 206-314 54-158 (414)
237 PF01704 UDPGP: UTP--glucose-1 98.0 0.00032 7E-09 74.0 19.0 212 87-315 54-289 (420)
238 cd04647 LbH_MAT_like Maltose O 98.0 2.2E-05 4.8E-10 66.7 8.0 17 412-428 22-39 (109)
239 COG1861 SpsF Spore coat polysa 98.0 0.0001 2.2E-09 69.5 12.6 115 89-234 3-123 (241)
240 COG1045 CysE Serine acetyltran 98.0 2.3E-05 4.9E-10 72.6 8.1 14 418-431 121-134 (194)
241 PLN02357 serine acetyltransfer 98.0 3.2E-05 7E-10 78.8 9.9 27 460-486 304-330 (360)
242 PLN02435 probable UDP-N-acetyl 98.0 0.00058 1.3E-08 73.0 19.1 209 88-314 115-364 (493)
243 KOG1460 GDP-mannose pyrophosph 97.9 2.6E-05 5.6E-10 76.1 7.2 64 374-437 290-361 (407)
244 KOG4750 Serine O-acetyltransfe 97.8 7.4E-05 1.6E-09 70.2 7.2 15 507-521 219-233 (269)
245 KOG3121 Dynactin, subunit p25 97.7 3.4E-05 7.3E-10 67.2 4.4 81 399-486 38-118 (184)
246 COG4284 UDP-glucose pyrophosph 97.7 0.0017 3.8E-08 68.0 17.6 179 87-270 103-305 (472)
247 COG0110 WbbJ Acetyltransferase 97.7 7.8E-05 1.7E-09 70.1 7.2 36 399-434 66-105 (190)
248 PRK00576 molybdopterin-guanine 97.6 0.00043 9.3E-09 64.5 10.3 97 110-231 3-103 (178)
249 TIGR02353 NRPS_term_dom non-ri 97.5 0.00024 5.3E-09 80.0 8.3 91 401-520 598-689 (695)
250 TIGR02353 NRPS_term_dom non-ri 97.5 0.00039 8.4E-09 78.4 9.2 92 400-504 112-207 (695)
251 PLN02830 UDP-sugar pyrophospho 97.4 0.024 5.2E-07 62.5 22.1 218 87-315 126-384 (615)
252 KOG1322 GDP-mannose pyrophosph 97.4 0.00015 3.4E-09 72.0 4.4 78 401-491 259-338 (371)
253 COG0110 WbbJ Acetyltransferase 97.3 0.0015 3.2E-08 61.4 9.6 9 423-431 88-96 (190)
254 cd03349 LbH_XAT Xenobiotic acy 97.2 0.0031 6.8E-08 56.8 9.8 13 416-428 27-39 (145)
255 KOG4042 Dynactin subunit p27/W 97.1 0.001 2.2E-08 58.7 6.1 31 401-431 9-41 (190)
256 KOG4750 Serine O-acetyltransfe 97.1 0.00099 2.1E-08 62.8 6.4 36 402-439 156-191 (269)
257 KOG2638 UDP-glucose pyrophosph 97.1 0.14 3E-06 52.9 21.4 348 88-480 102-497 (498)
258 KOG3121 Dynactin, subunit p25 96.9 0.0014 3E-08 57.3 5.1 17 399-415 53-70 (184)
259 COG4801 Predicted acyltransfer 96.9 0.0036 7.9E-08 59.3 7.5 68 416-502 33-101 (277)
260 PF00132 Hexapep: Bacterial tr 96.8 0.0011 2.3E-08 44.5 2.9 33 400-432 1-35 (36)
261 COG4801 Predicted acyltransfer 96.8 0.0051 1.1E-07 58.3 7.7 68 401-486 34-103 (277)
262 PF00132 Hexapep: Bacterial tr 96.5 0.002 4.4E-08 43.1 2.3 14 471-484 3-16 (36)
263 PF14602 Hexapep_2: Hexapeptid 96.3 0.0042 9E-08 41.3 2.9 30 401-431 2-32 (34)
264 PF14602 Hexapep_2: Hexapeptid 95.7 0.016 3.4E-07 38.5 3.8 13 472-484 4-16 (34)
265 TIGR03552 F420_cofC 2-phospho- 95.4 0.076 1.7E-06 50.0 8.8 86 121-229 30-117 (195)
266 cd00761 Glyco_tranf_GTA_type G 95.2 0.34 7.5E-06 41.8 11.9 99 114-229 2-103 (156)
267 COG1920 Predicted nucleotidylt 92.5 1.5 3.2E-05 41.0 10.4 105 90-228 1-111 (210)
268 PF00535 Glycos_transf_2: Glyc 90.6 4.4 9.5E-05 35.6 11.7 109 115-240 4-115 (169)
269 PF07959 Fucokinase: L-fucokin 88.9 0.69 1.5E-05 49.1 5.7 96 335-438 226-323 (414)
270 PLN02726 dolichyl-phosphate be 88.0 2.6 5.7E-05 40.9 8.7 49 187-238 79-128 (243)
271 cd06442 DPM1_like DPM1_like re 86.0 12 0.00026 35.1 12.0 107 115-238 3-113 (224)
272 cd06434 GT2_HAS Hyaluronan syn 84.2 14 0.0003 35.1 11.6 96 115-229 6-103 (235)
273 cd04188 DPG_synthase DPG_synth 83.3 5.9 0.00013 37.2 8.5 50 187-239 68-118 (211)
274 cd04186 GT_2_like_c Subfamily 82.1 26 0.00056 30.7 11.8 98 115-232 3-103 (166)
275 cd02525 Succinoglycan_BP_ExoA 81.7 22 0.00049 33.7 12.0 105 115-237 6-115 (249)
276 cd04179 DPM_DPG-synthase_like 80.5 23 0.00049 32.0 11.1 101 122-239 10-115 (185)
277 KOG2978 Dolichol-phosphate man 75.0 75 0.0016 29.9 12.6 103 121-241 18-126 (238)
278 cd06423 CESA_like CESA_like is 74.8 41 0.0009 29.1 10.8 101 115-231 3-106 (180)
279 cd06439 CESA_like_1 CESA_like_ 73.1 74 0.0016 30.4 12.9 90 122-230 42-136 (251)
280 TIGR01556 rhamnosyltran L-rham 72.1 49 0.0011 32.6 11.6 96 123-237 9-107 (281)
281 KOG2388 UDP-N-acetylglucosamin 72.0 3.9 8.5E-05 43.4 3.7 72 87-161 95-180 (477)
282 cd06433 GT_2_WfgS_like WfgS an 69.9 56 0.0012 29.5 10.8 97 115-231 4-103 (202)
283 cd06427 CESA_like_2 CESA_like_ 68.5 94 0.002 29.7 12.5 50 187-239 70-120 (241)
284 cd04185 GT_2_like_b Subfamily 66.8 81 0.0018 28.9 11.3 99 116-229 4-105 (202)
285 PF01983 CofC: Guanylyl transf 65.2 4.8 0.0001 38.8 2.5 108 90-228 1-113 (217)
286 TIGR03469 HonB hopene-associat 63.5 1.1E+02 0.0023 32.0 12.6 104 122-235 53-165 (384)
287 cd02510 pp-GalNAc-T pp-GalNAc- 63.3 1.1E+02 0.0024 30.5 12.2 104 115-233 4-113 (299)
288 PRK10073 putative glycosyl tra 62.1 1.1E+02 0.0024 31.2 12.1 99 122-238 19-120 (328)
289 cd04192 GT_2_like_e Subfamily 61.2 1E+02 0.0023 28.5 11.1 106 115-234 3-113 (229)
290 cd04184 GT2_RfbC_Mx_like Myxoc 60.4 1.3E+02 0.0029 27.3 11.8 103 115-234 7-115 (202)
291 PF04519 Bactofilin: Polymer-f 60.0 26 0.00057 29.0 5.9 20 459-478 37-56 (101)
292 cd06438 EpsO_like EpsO protein 59.8 1.4E+02 0.0029 27.1 12.6 104 114-235 2-112 (183)
293 PRK13412 fkp bifunctional fuco 59.4 14 0.00031 43.3 5.3 55 412-485 332-388 (974)
294 cd04187 DPM1_like_bac Bacteria 59.0 1.3E+02 0.0028 27.0 10.9 47 187-237 66-113 (181)
295 PTZ00260 dolichyl-phosphate be 58.3 2.2E+02 0.0048 29.1 16.4 137 187-349 148-290 (333)
296 cd04195 GT2_AmsE_like GT2_AmsE 58.3 1.5E+02 0.0032 27.0 11.6 99 114-230 3-107 (201)
297 PRK14583 hmsR N-glycosyltransf 56.9 1.3E+02 0.0027 32.2 11.9 91 123-230 89-182 (444)
298 PRK11204 N-glycosyltransferase 54.8 1.5E+02 0.0033 31.0 12.1 93 122-231 67-162 (420)
299 cd02526 GT2_RfbF_like RfbF is 51.3 2.1E+02 0.0046 26.8 16.1 86 122-225 11-97 (237)
300 TIGR03111 glyc2_xrt_Gpos1 puta 49.4 2.5E+02 0.0053 30.0 12.6 42 187-231 117-159 (439)
301 cd02520 Glucosylceramide_synth 48.4 2.2E+02 0.0047 26.1 11.1 35 191-228 76-111 (196)
302 cd02522 GT_2_like_a GT_2_like_ 47.8 2.3E+02 0.0049 26.1 11.5 95 114-232 4-101 (221)
303 cd06420 GT2_Chondriotin_Pol_N 46.2 2E+02 0.0044 25.5 10.0 99 115-228 3-104 (182)
304 TIGR03472 HpnI hopanoid biosyn 46.0 1.6E+02 0.0036 30.5 10.4 38 189-229 114-152 (373)
305 PRK10714 undecaprenyl phosphat 45.4 2.7E+02 0.0058 28.4 11.7 46 187-236 76-122 (325)
306 COG1216 Predicted glycosyltran 45.3 3.3E+02 0.0071 27.2 16.7 101 122-238 16-119 (305)
307 cd06421 CESA_CelA_like CESA_Ce 43.9 2.7E+02 0.0059 25.9 12.0 91 123-230 16-111 (234)
308 COG1664 CcmA Integral membrane 37.0 1.7E+02 0.0037 26.3 7.6 26 414-439 48-74 (146)
309 cd06435 CESA_NdvC_like NdvC_li 36.6 3.6E+02 0.0078 25.2 10.8 97 115-229 4-110 (236)
310 TIGR00288 conserved hypothetic 35.3 3.5E+02 0.0077 24.7 10.8 91 123-240 42-137 (160)
311 PF13641 Glyco_tranf_2_3: Glyc 35.2 1.3E+02 0.0028 28.1 7.1 106 114-234 6-117 (228)
312 cd04196 GT_2_like_d Subfamily 35.1 3.5E+02 0.0075 24.6 10.4 100 115-230 4-106 (214)
313 cd02511 Beta4Glucosyltransfera 34.5 4E+02 0.0087 25.1 11.4 86 122-231 13-99 (229)
314 PRK13915 putative glucosyl-3-p 31.6 5E+02 0.011 26.2 11.0 50 187-239 101-153 (306)
315 cd06913 beta3GnTL1_like Beta 1 31.4 4.2E+02 0.0092 24.5 10.9 44 187-233 70-114 (219)
316 COG0381 WecB UDP-N-acetylgluco 29.9 1.4E+02 0.003 31.3 6.5 81 127-218 22-105 (383)
317 PRK00923 sirohydrochlorin coba 29.8 74 0.0016 27.4 4.0 22 122-143 46-67 (126)
318 PRK10018 putative glycosyl tra 27.5 6.2E+02 0.013 25.1 12.8 90 122-230 18-112 (279)
319 COG1215 Glycosyltransferases, 26.1 4.6E+02 0.01 27.3 10.1 210 123-367 69-284 (439)
320 PRK11498 bcsA cellulose syntha 23.9 9.4E+02 0.02 28.3 12.4 96 123-240 275-375 (852)
321 COG0035 Upp Uracil phosphoribo 23.4 5.1E+02 0.011 24.8 8.5 113 112-244 72-187 (210)
322 TIGR02990 ectoine_eutA ectoine 22.3 7E+02 0.015 24.3 9.6 122 89-226 71-202 (239)
323 COG1105 FruK Fructose-1-phosph 21.9 5.9E+02 0.013 26.0 9.2 119 93-234 32-161 (310)
324 PRK05782 bifunctional sirohydr 20.8 1.6E+02 0.0034 30.5 4.9 67 87-156 3-90 (335)
325 PF04519 Bactofilin: Polymer-f 20.8 4.7E+02 0.01 21.3 7.6 17 422-438 36-52 (101)
326 PRK10063 putative glycosyl tra 20.7 7.7E+02 0.017 23.8 12.6 42 187-231 68-109 (248)
No 1
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.8e-70 Score=543.59 Aligned_cols=387 Identities=42% Similarity=0.750 Sum_probs=350.8
Q ss_pred CCccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCC
Q 009971 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 86 ~~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (521)
+++++.|+|||||.|+||.|||+.++||.+|++|+|+|||++|+||.++||.+|.|+++|+..+|.+||..+++|+++.
T Consensus 2 ~~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~- 80 (393)
T COG0448 2 MKKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDR- 80 (393)
T ss_pred CccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCcccccc-
Confidence 3567999999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
..+++.+++++|...++.|+.||++++++.++++++...+.+|++.||++|++|+.++++.|.++++++|+++.+++.+
T Consensus 81 -~~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~ 159 (393)
T COG0448 81 -KNGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPRE 159 (393)
T ss_pred -ccCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChH
Confidence 4566889998887566779999999999999999988899999999999999999999999999999999999999999
Q ss_pred cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC---CCCC
Q 009971 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GAND 322 (521)
Q Consensus 246 ~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~d 322 (521)
+++.||++.+|++++|++|.|||..... ...+++||+|+|++++|.++|++... +..|
T Consensus 160 eas~fGim~~D~~~~i~~F~eKp~~~~~-------------------~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~D 220 (393)
T COG0448 160 EASRFGVMNVDENGRIIEFVEKPADGPP-------------------SNSLASMGIYIFNTDLLKELLEEDAKDPNSSHD 220 (393)
T ss_pred hhhhcCceEECCCCCEEeeeeccCcCCc-------------------ccceeeeeeEEEcHHHHHHHHHHHhcccCcccc
Confidence 9999999999999999999999987211 12289999999999999999986543 4579
Q ss_pred hhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCceee-cccccce
Q 009971 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKML-DADVTDS 401 (521)
Q Consensus 323 ~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i~~~ 401 (521)
|+.++||.+++++ ++++|+++|||.||||+++|++||+.++... |.+. ++++.++|++....+||+++. ++.+.+|
T Consensus 221 fgkdiIp~~~~~~-~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~-~~~~-lyd~~w~IyT~~~~~pPak~~~~s~v~nS 297 (393)
T COG0448 221 FGKDIIPKLLERG-KVYAYEFSGYWRDVGTIDSYYEANMDLLSPQ-PELN-LYDRNWPIYTKNKNLPPAKFVNDSEVSNS 297 (393)
T ss_pred chHHHHHHHHhcC-CEEEEeccchhhhcccHHHHHHhhHHhcCCC-Cccc-ccCCCCceeecCCCCCCceEecCceEeee
Confidence 9999999999855 4999999999999999999999999999844 7787 899999999999999999987 5667999
Q ss_pred EECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCC
Q 009971 402 VIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 481 (521)
Q Consensus 402 ~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 481 (521)
.|+.||+|.. .|.||+|+.+++|+++|.|++|++|++ +.||++|+|++|||++||.|++|
T Consensus 298 Lv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~-------------------~~IG~~~~l~~aIIDk~v~I~~g 357 (393)
T COG0448 298 LVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD-------------------VEIGEGAVLRRAIIDKNVVIGEG 357 (393)
T ss_pred eeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCC-------------------cEECCCCEEEEEEeCCCcEeCCC
Confidence 9999999999 889999999999999999999999998 79999999999999999999999
Q ss_pred cEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 482 VKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 482 ~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
++|.+.. ++..+.. +.+. +++++|+++..++.+..
T Consensus 358 ~~i~~~~--~~~d~~~-~~~~-~~ivVv~k~~~~~~~~~ 392 (393)
T COG0448 358 VVIGGDK--PEEDRKR-FRSE-EGIVVVPKGMVIKLDIM 392 (393)
T ss_pred cEEcCCc--chhcccc-cccc-CCcEEEecccEeccccc
Confidence 9998865 4444444 5666 88899999999987654
No 2
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=8.8e-66 Score=546.20 Aligned_cols=433 Identities=70% Similarity=1.161 Sum_probs=379.1
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
|++|+|||||||+|+||+|||..+||||+||+|++|||+|+|++|.++|+++|+|+++++.+++.+|+.+.|.|+.+..+
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 56899999999999999999999999999999878999999999999999999999999999999999976654432223
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcC---cceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecC
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHN---VLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~---~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
...++.++...|+..+..|++||+++++++++++++.. .++||+++||++++.|+.+++++|+++++++|+++.+++
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~ 160 (436)
T PLN02241 81 GDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVD 160 (436)
T ss_pred CCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEecc
Confidence 33446666665644444578999999999988876532 579999999999999999999999999999999998887
Q ss_pred cccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCCh
Q 009971 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (521)
Q Consensus 244 ~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~ 323 (521)
.+++..||++.+|++++|++|.|||..+..+++++++++|.+++......++++++|+|+|++++|..++++.++...+|
T Consensus 161 ~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~ 240 (436)
T PLN02241 161 ESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDF 240 (436)
T ss_pred hhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccch
Confidence 65678999999998899999999997766667888999888777544444679999999999999987877665555578
Q ss_pred hhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCceeecccccceEE
Q 009971 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVI 403 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~I 403 (521)
.+++++.+++++.++++|.+++||.||+++++|++|++.++... |... +++++.++++.....||+.+.++.+.+|+|
T Consensus 241 ~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~-~~~~-~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I 318 (436)
T PLN02241 241 GSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQP-PKFS-FYDPDAPIYTSPRFLPPSKIEDCRITDSII 318 (436)
T ss_pred hHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCC-chhh-ccCCCCcccccCCCCCCcEecCCeEEEeEE
Confidence 89999999987789999999999999999999999999999865 5455 667788899888888999998888888999
Q ss_pred CCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcE
Q 009971 404 GEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVK 483 (521)
Q Consensus 404 g~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~ 483 (521)
+++|.|++|.|++|+||++|.||++|+|.++++|+.+||+.++........|.+++.||++|+|++++|++++.||++++
T Consensus 319 ~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~ 398 (436)
T PLN02241 319 SHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVV 398 (436)
T ss_pred cCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcE
Confidence 99999998889999999999999999999999999999988776665555676667899999999999999999999999
Q ss_pred EeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 484 IVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 484 i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+.+.+++.+..++|++|+|++|+|+||+++.|++||+|
T Consensus 399 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 399 IINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI 436 (436)
T ss_pred EecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence 99999999999999999999998899999999999986
No 3
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=3.3e-67 Score=506.78 Aligned_cols=365 Identities=42% Similarity=0.703 Sum_probs=322.3
Q ss_pred CcCCccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCC
Q 009971 84 PEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMG 163 (521)
Q Consensus 84 ~~~~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~ 163 (521)
|.+ +.|+|+||.||.||||+|||..+||||+|++ |||||+|++++|.++||++|++.++|++++++.|+.+.|..++|
T Consensus 5 ~~~-~~vkaiILvGG~GTRLrPLT~t~pKPlVpfg-n~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~~lg 82 (371)
T KOG1322|consen 5 PAD-QSVKAIILVGGYGTRLRPLTLTRPKPLVPFG-NKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGKELG 82 (371)
T ss_pred ccc-cceeEEEEecCCCceeeceeccCCCcccccC-cchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHhhhccc
Confidence 444 7899999999999999999999999999997 78999999999999999999999999999999999998854432
Q ss_pred CCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecC
Q 009971 164 GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 164 ~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
|+++..+|+ +|.|+.||++++++.+|.+++ .+|++|+||++|++||++|+++|+++++++|+++++++
T Consensus 83 -------Vei~~s~et--eplgtaGpl~laR~~L~~~~~---~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vd 150 (371)
T KOG1322|consen 83 -------VEILASTET--EPLGTAGPLALARDFLWVFED---APFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVD 150 (371)
T ss_pred -------eEEEEEecc--CCCcccchHHHHHHHhhhcCC---CcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEecc
Confidence 899998885 489999999999999988763 48999999999999999999999999999999999988
Q ss_pred cccCcceeEEEeCC-CCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCC
Q 009971 244 EKRATAFGLMKIDE-EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (521)
Q Consensus 244 ~~~~~~~g~v~~d~-~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d 322 (521)
+ +++||+|+.|+ .|+|.+|.|||+... ++-.++|||+|++++|.+++ .+++.
T Consensus 151 e--pSkyGvv~~d~~~grV~~F~EKPkd~v---------------------snkinaGiYi~~~~vL~ri~--~~ptS-- 203 (371)
T KOG1322|consen 151 E--PSKYGVVVIDEDTGRVIRFVEKPKDLV---------------------SNKINAGIYILNPEVLDRIL--LRPTS-- 203 (371)
T ss_pred C--ccccceEEEecCCCceeEehhCchhhh---------------------hccccceEEEECHHHHhHhh--hcccc--
Confidence 6 88999999998 799999999999543 34677999999999999877 34544
Q ss_pred hhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCceeecccccceE
Q 009971 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSV 402 (521)
Q Consensus 323 ~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~ 402 (521)
|+++++|.+++ ++++++|.++|||+|||+|+||+.+ +. ||+.+.+.++..+++||+.+.++++.|++
T Consensus 204 iekEifP~~a~-~~~l~a~~l~gfWmDIGqpkdf~~g-----------~~-~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~ 270 (371)
T KOG1322|consen 204 IEKEIFPAMAE-EHQLYAFDLPGFWMDIGQPKDFLTG-----------FS-FYLRSLPKYTSPRLLPGSKIVGNVLVDSI 270 (371)
T ss_pred hhhhhhhhhhh-cCceEEEecCchhhhcCCHHHHHHH-----------HH-HHHhhCcccCCccccCCccccccEeeccc
Confidence 89999998888 8999999999999999999999999 33 77888888999999999999888777755
Q ss_pred ECCCcEEceeEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCC
Q 009971 403 IGEGCVIKNCKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 481 (521)
Q Consensus 403 Ig~~~~I~~~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 481 (521)
++.| .+|.|+ +++||++|+|++|++|++|+++++++|++.+...+.+.++.+|++++ + +|+++++||+|
T Consensus 271 ~~iG---~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~--~-----~id~~a~lG~n 340 (371)
T KOG1322|consen 271 ASIG---ENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIW--A-----RIDKNAVLGKN 340 (371)
T ss_pred cccC---CccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCc--e-----EEecccEeccc
Confidence 4444 235555 59999999999999999999999999999999888887777444433 3 89999999999
Q ss_pred cEEeCCCccCCceeecCCeEEcCCeEEECCCCEEC
Q 009971 482 VKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIP 516 (521)
Q Consensus 482 ~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~ 516 (521)
|++.+.++++++ ++.++++++++|.++++|.
T Consensus 341 V~V~d~~~vn~g----~~l~~ks~~~~v~~~~iI~ 371 (371)
T KOG1322|consen 341 VIVADEDYVNEG----SGLPIKSGITVVLKPAIIM 371 (371)
T ss_pred eEEecccccccc----eeEEeccceeecccccccC
Confidence 999999998887 7899999999999988873
No 4
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=3.2e-62 Score=517.68 Aligned_cols=429 Identities=66% Similarity=1.128 Sum_probs=367.7
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
|++++|||||||.||||+|||..+||||+||+|++|||+|+|++|.++|+++|+|+++++.+++.+|+.+.+.+. .+
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~---~~ 77 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD---GF 77 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc---cc
Confidence 457999999999999999999999999999998669999999999999999999999999999999998643221 11
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCccc
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKR 246 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~ 246 (521)
..+++.++...|...++.|++||++++++++.+++....++||+++||++++.|+.++++.|+++++++|+++.+.+.++
T Consensus 78 ~~g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 157 (429)
T PRK02862 78 SGGFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKD 157 (429)
T ss_pred CCCEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhh
Confidence 22335555555544556677999999999999886533478999999999999999999999999999999998776556
Q ss_pred CcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhc
Q 009971 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSE 326 (521)
Q Consensus 247 ~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~d 326 (521)
+..||++.+|++++|..|.|||.......+.++.++|...+.......+++++|+|+|++++|.++++.. +...++.++
T Consensus 158 ~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~-~~~~~~~~d 236 (429)
T PRK02862 158 ASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKN-PEYTDFGKE 236 (429)
T ss_pred cccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHC-CChhhhHHH
Confidence 7789999999889999999999865555677777777666655444567999999999999997777643 234567789
Q ss_pred chHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCceeecccccceEECCC
Q 009971 327 VIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEG 406 (521)
Q Consensus 327 il~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~ 406 (521)
+++.+++ +.++++|.+++||.|+||+++|++||+.++....|... .+.+.+++++.+.+.||+.+.++.++++.||++
T Consensus 237 il~~l~~-~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~-~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig~~ 314 (429)
T PRK02862 237 IIPEAIR-DYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFS-FYDEKAPIYTRARYLPPSKLLDATITESIIAEG 314 (429)
T ss_pred HHHHHhc-cCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCccc-ccCCCCceeccCCCCCCccccccEEEeCEECCC
Confidence 9999986 78999999999999999999999999999844445555 667788999999999999888888899999999
Q ss_pred cEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeC
Q 009971 407 CVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 407 ~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 486 (521)
|.|.+|.|.+|+||.+|+||++|+|.+|++|+.+||+..+....+.-.+..++.||++|+|++|+|+++|.||++|++.+
T Consensus 315 ~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~ 394 (429)
T PRK02862 315 CIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVN 394 (429)
T ss_pred CEECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEEec
Confidence 99955999999999999999999999999999999887776555655666678999999999999999999999999999
Q ss_pred CCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 487 SDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 487 ~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
.+.+.+..+...|++|+.|+|+|++++++++|++|
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (429)
T PRK02862 395 KDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTVI 429 (429)
T ss_pred CCCcccccccccceEeeCCEEEEcCCcCCCCCCCC
Confidence 99999999999999999999999999999999976
No 5
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.1e-55 Score=461.93 Aligned_cols=375 Identities=38% Similarity=0.670 Sum_probs=312.5
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
|++|+|||||||.||||+|||..+||||+||+|++|||+|+|++|.++|+++|+|+++++.+++.+|+.+...|++...
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~- 79 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRI- 79 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCC-
Confidence 5689999999999999999999999999999987689999999999999999999999999999999987555543221
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCccc
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKR 246 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~ 246 (521)
...+.+++.++...++.|++||++++++++++++....++||+++||++++.|+.++++.|+++++++|+++...+.++
T Consensus 80 -~~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~ 158 (380)
T PRK05293 80 -NGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEE 158 (380)
T ss_pred -CCCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhh
Confidence 1224555333333445688999999999999886433468999999999999999999999998999988887665556
Q ss_pred CcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhC---CCCCCh
Q 009971 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGANDF 323 (521)
Q Consensus 247 ~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~---~~~~d~ 323 (521)
+..||++.+|++++|.+|.|||..+. .+++++|+|+|++++|..++++.. ....+|
T Consensus 159 ~~~yG~v~~d~~g~V~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 217 (380)
T PRK05293 159 ASRFGIMNTDENMRIVEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDF 217 (380)
T ss_pred ccccCEEEECCCCcEEEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHhhcCCchhhh
Confidence 77899999988899999999986432 358999999999998877766432 123467
Q ss_pred hhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCceee-cccccceE
Q 009971 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKML-DADVTDSV 402 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i~~~~ 402 (521)
.+++++.+++.+.++++|.++++|.||||+++|++||+.++... +... ++++...+++.+.+.+|+.++ ++.|.++.
T Consensus 218 ~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~-~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ 295 (380)
T PRK05293 218 GKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPE-NPLN-LFDRNWRIYSVNPNLPPQYIAENAKVKNSL 295 (380)
T ss_pred HHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCC-chhh-hcCCCCceecCCcCCCCCEECCCCEEecCE
Confidence 78999999987889999999999999999999999999988765 3344 667778888888888899886 67788999
Q ss_pred ECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCc
Q 009971 403 IGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNV 482 (521)
Q Consensus 403 Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~ 482 (521)
||++|.|+. .+.+|+||++|+||++|+|.+|+++++ +.||++|+|.+|+|++++.||+++
T Consensus 296 Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~-------------------~~i~~~~~i~~~ii~~~~~i~~~~ 355 (380)
T PRK05293 296 VVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPG-------------------AKIGENVVIERAIIGENAVIGDGV 355 (380)
T ss_pred ECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCC-------------------CEECCCeEEeEEEECCCCEECCCC
Confidence 999999975 567999999999999999999999987 689999999999999999999999
Q ss_pred EEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 483 KIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 483 ~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
++.+... .+++||+++.|+++++|
T Consensus 356 ~i~~~~~---------------~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 356 IIGGGKE---------------VITVIGENEVIGVGTVI 379 (380)
T ss_pred EEcCCCc---------------eeEEEeCCCCCCCCcEe
Confidence 9976321 13567777777777664
No 6
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=3.4e-54 Score=454.08 Aligned_cols=385 Identities=37% Similarity=0.645 Sum_probs=310.6
Q ss_pred CCccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCC
Q 009971 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 86 ~~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (521)
+|++|+|||||||.||||+|||..+||||+||+|++|||+|+|++|.++|+++|+|+++++.+++.+|+.+.+.+. .
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~---~ 78 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLS---G 78 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCcc---c
Confidence 5778999999999999999999999999999998669999999999999999999999999999999998643221 0
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
....++..+. .|....+.|++||+++++.+++++++...++||+++||++++.|+.++++.|+++++++|+++...+.+
T Consensus 79 ~~~~~~~~~~-~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~ 157 (407)
T PRK00844 79 LLGNYITPVP-AQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPRE 157 (407)
T ss_pred cCCCeEEECC-cccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchH
Confidence 1122232211 122223457799999999999998653335699999999999999999999999999999998776545
Q ss_pred cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhC---CCCCC
Q 009971 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGAND 322 (521)
Q Consensus 246 ~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~---~~~~d 322 (521)
++..||++.+|++|+|..|.|||..+... . ....++++++|+|+|++++|.+++++.. ....+
T Consensus 158 ~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~--~------------~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~ 223 (407)
T PRK00844 158 EASAFGVIEVDPDGRIRGFLEKPADPPGL--P------------DDPDEALASMGNYVFTTDALVDALRRDAADEDSSHD 223 (407)
T ss_pred HcccCCEEEECCCCCEEEEEECCCCcccc--c------------CCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCccccc
Confidence 67789999999889999999998653210 0 0012368999999999999866665321 13346
Q ss_pred hhhcchHhhhhCCceEEEEEe------------cceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCC
Q 009971 323 FGSEVIPGATSIGMRVQAYLY------------DGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPP 390 (521)
Q Consensus 323 ~~~dil~~li~~~~~I~~~~~------------~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~ 390 (521)
+..|+++.+++. .++++|.+ ++||.||+|+++|++||+.++.+. +.+. ++.+..++++..+..||
T Consensus 224 ~~~dii~~l~~~-~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~-~~~~-~~~~~~~~~~~~~~~~~ 300 (407)
T PRK00844 224 MGGDIIPRLVER-GRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVH-PVFN-LYNREWPIYTSSPNLPP 300 (407)
T ss_pred chhhHHHHHhcc-CeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCC-Cccc-cCCCCCcccccCCCCCC
Confidence 678999999985 48999976 599999999999999999999765 3344 56677788888888888
Q ss_pred ceeecc-----cccceEECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCC
Q 009971 391 SKMLDA-----DVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNS 465 (521)
Q Consensus 391 ~~i~~~-----~i~~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~ 465 (521)
+.+... .+.+++||++|.|+++.|.+|+||++|+|+++|+|++|+++.+ +.||++|
T Consensus 301 ~~~~~~~~~~~~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~-------------------~~i~~~~ 361 (407)
T PRK00844 301 AKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG-------------------VRIGRGA 361 (407)
T ss_pred ceEecCCCccceEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC-------------------CEECCCC
Confidence 887532 4678999999999888899999999999999999999999987 6899999
Q ss_pred EEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEc-CCeEEECCCCEE
Q 009971 466 HIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIK-SGIVTIIKDALI 515 (521)
Q Consensus 466 ~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~-~g~v~I~~~~~i 515 (521)
+|.+|+|++++.||+++++.+.. +.+ +.+++|. +|+++|++|+.|
T Consensus 362 ~i~~~ii~~~~~i~~~~~i~~~~---~~~--~~~~~~~~~~~~~i~~~~~~ 407 (407)
T PRK00844 362 VVRRAILDKNVVVPPGATIGVDL---EED--RRRFTVSEGGIVVVPKGQRV 407 (407)
T ss_pred EEEeeEECCCCEECCCCEECCCc---ccc--ccceEeccceEEEeCCCCCC
Confidence 99999999999999999997731 122 3366665 788999988764
No 7
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=5.5e-54 Score=454.26 Aligned_cols=390 Identities=37% Similarity=0.653 Sum_probs=316.1
Q ss_pred cCCccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCC
Q 009971 85 EASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG 164 (521)
Q Consensus 85 ~~~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~ 164 (521)
.++++++|||||||.||||+|||+.+||||+||+|++|||+|+|++|.++|+++|+|+++++.+++.+|+.+.|.+. .
T Consensus 11 ~~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~-~- 88 (425)
T PRK00725 11 QLTRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFF-R- 88 (425)
T ss_pred hhhcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhccc-c-
Confidence 34578999999999999999999999999999998734999999999999999999999999999999998754321 0
Q ss_pred CcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCc
Q 009971 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDE 244 (521)
Q Consensus 165 ~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~ 244 (521)
.....++.++...+....+.|++||++++++++++++...+++||+++||++++.|+.++++.|.++++++|+++.+.+.
T Consensus 89 ~~~~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~ 168 (425)
T PRK00725 89 EELGEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPR 168 (425)
T ss_pred cCCCCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecch
Confidence 00123455555555433455789999999999999875445789999999999999999999999999999999887655
Q ss_pred ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhC---CCCC
Q 009971 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGAN 321 (521)
Q Consensus 245 ~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~---~~~~ 321 (521)
+++..||++.+|++++|..|.|||..+.. +. .....+++++|+|+|++++|.+++.+.. ....
T Consensus 169 ~~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~~------------~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~ 234 (425)
T PRK00725 169 EEASAFGVMAVDENDRITAFVEKPANPPA--MP------------GDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSH 234 (425)
T ss_pred hhcccceEEEECCCCCEEEEEECCCCccc--cc------------cCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccc
Confidence 56789999999988999999999864321 00 0011469999999999998866665421 1345
Q ss_pred ChhhcchHhhhhCCceEEEEEec-----------ceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCC
Q 009971 322 DFGSEVIPGATSIGMRVQAYLYD-----------GYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPP 390 (521)
Q Consensus 322 d~~~dil~~li~~~~~I~~~~~~-----------g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~ 390 (521)
+|.+|+++.+++ ..++++|.++ +||.||||+++|++||+.++... +... +++...++++..+..||
T Consensus 235 ~~~~dii~~l~~-~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~-~~~~-~~~~~~~i~t~~~~~~~ 311 (425)
T PRK00725 235 DFGKDIIPKIVE-EGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVT-PELD-LYDRNWPIWTYQEQLPP 311 (425)
T ss_pred hhhHHHHHHHhc-cCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCC-chhh-ccCCCCccccCCCCCCC
Confidence 677899999998 5589999985 59999999999999999998754 4444 56677788888888888
Q ss_pred ceee------cccccceEECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCC
Q 009971 391 SKML------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKN 464 (521)
Q Consensus 391 ~~i~------~~~i~~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~ 464 (521)
+.+. .+.+.+++||+||+|.+|.|.+|+||++|.||++|+|++|++|++ +.||++
T Consensus 312 ~~~~~~~~~~~~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~-------------------~~I~~~ 372 (425)
T PRK00725 312 AKFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD-------------------VNVGRS 372 (425)
T ss_pred CeEeccCCCCcceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC-------------------CEECCC
Confidence 8763 134679999999999669999999999999999999999999997 699999
Q ss_pred CEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEEC
Q 009971 465 SHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIP 516 (521)
Q Consensus 465 ~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~ 516 (521)
|+|.+|+|+++|+|+++++|... ..++..+ ..++..|+|+|++++.+-
T Consensus 373 ~~i~~~ii~~~~~i~~~~~i~~~-~~~~~~~---~~~~~~~~~~i~~~~~~~ 420 (425)
T PRK00725 373 CRLRRCVIDRGCVIPEGMVIGED-PEEDAKR---FRRSEEGIVLVTREMLDK 420 (425)
T ss_pred CEEeeEEECCCCEECCCCEECCC-CCCCCce---eEecCccEEEECCCcccc
Confidence 99999999999999999999643 3333323 455678889999986653
No 8
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.3e-50 Score=412.18 Aligned_cols=353 Identities=28% Similarity=0.455 Sum_probs=286.1
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCC
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (521)
.|+|||||||+||||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++|..+++++|+.+++.+.+
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~~------ 73 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLGV------ 73 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccccCC------
Confidence 48999999999999999999999999999976 99999999999999999999999999999999998643322
Q ss_pred CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 009971 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (521)
Q Consensus 169 ~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~ 248 (521)
.+..+... . ++||+++|+++.+.+.. ++|++++||++++.|+.+++++|+++.+.+++...+.... .
T Consensus 74 -~I~y~~e~----~---~lGTag~l~~a~~~l~~---~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~--~ 140 (358)
T COG1208 74 -RITYVVEK----E---PLGTAGALKNALDLLGG---DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLDP--S 140 (358)
T ss_pred -ceEEEecC----C---cCccHHHHHHHHHhcCC---CcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCCC--C
Confidence 13332211 1 49999999999988863 7999999999999999999999999988788888776653 7
Q ss_pred ceeEEEeCCC-CCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhcc
Q 009971 249 AFGLMKIDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEV 327 (521)
Q Consensus 249 ~~g~v~~d~~-grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~di 327 (521)
.||++..+++ ++|.+|.|||.... ..+++.++|+|+|++++|+ ++. .....+|..++
T Consensus 141 ~~Gvv~~~~~~~~v~~f~ekp~~~~-------------------~~~~~in~Giyi~~~~v~~-~i~--~~~~~~~~~~~ 198 (358)
T COG1208 141 EFGVVETDDGDGRVVEFREKPGPEE-------------------PPSNLINAGIYIFDPEVFD-YIE--KGERFDFEEEL 198 (358)
T ss_pred cCceEEecCCCceEEEEEecCCCCC-------------------CCCceEEeEEEEECHHHhh-hcc--cCCcccchhhH
Confidence 8999998754 59999999995311 1246999999999999997 333 23455677789
Q ss_pred hHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCC-cCCCceeecccccceEECCC
Q 009971 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPR-YLPPSKMLDADVTDSVIGEG 406 (521)
Q Consensus 328 l~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~i~~~~Ig~~ 406 (521)
++.+++.+..++++.++++|+|||||++|.+|+..++...... +......... ... +.+ +++++||++
T Consensus 199 ~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~------~~~~~~~~~~~~~~-~~i----~gp~~ig~~ 267 (358)
T COG1208 199 LPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKS------PLGPIEEPVVIIRS-AYI----IGPVVIGPG 267 (358)
T ss_pred HHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccc------cccccccccccccc-ceE----eCCEEECCC
Confidence 9999996666999999999999999999999999988643110 1111111100 111 211 356778888
Q ss_pred cEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEE
Q 009971 407 CVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 484 (521)
Q Consensus 407 ~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i 484 (521)
|.|+. +.|. +++||++|+||+++.|.+|++|++ +.|+++++|.+|||+.||+||+++ .
T Consensus 268 ~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~-------------------~~i~~~~~i~~sIi~~~~~ig~~~-~ 327 (358)
T COG1208 268 AKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDN-------------------VVIGHGSYIGDSIIGENCKIGASL-I 327 (358)
T ss_pred CEECCCCEECCCcEECCCCEECCCcEEEeeEEEcC-------------------CEECCCCEEeeeEEcCCcEECCce-e
Confidence 88887 7777 799999999999999999999998 689999999999999999999933 2
Q ss_pred eCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 485 VNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 485 ~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+++ +.++.++.+..| +++++++.+.+++++
T Consensus 328 -----i~d-~~~g~~~~i~~g-~~~~~~~~~~~~~~~ 357 (358)
T COG1208 328 -----IGD-VVIGINSEILPG-VVVGPGSVVESGEIE 357 (358)
T ss_pred -----ecc-eEecCceEEcCc-eEeCCCccccCcccc
Confidence 777 888888899989 889999988888754
No 9
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=6.6e-49 Score=408.13 Aligned_cols=356 Identities=48% Similarity=0.858 Sum_probs=283.4
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcE
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (521)
|||||||.||||+|||+++||||+||+|++|||+|++++|.++|+++|+|++++..+++.+|+.+.+... .. ....+
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~--~~-~~~~~ 77 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFD--GF-IDGFV 77 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCcc--Cc-cCCCE
Confidence 6999999999999999999999999998658999999999999999999999999999999998643321 00 11235
Q ss_pred EEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCccee
Q 009971 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (521)
Q Consensus 172 ~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g 251 (521)
+++...+...++.|++||+++++.+++++++...++|++++||++++.++.++++.|+++++++++++.+.+.+++..||
T Consensus 78 ~~~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g 157 (361)
T TIGR02091 78 TLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFG 157 (361)
T ss_pred EEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhccccc
Confidence 55544443345667799999999999888643347899999999999999999999998888888888776655677899
Q ss_pred EEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhC---CCCCChhhcch
Q 009971 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGANDFGSEVI 328 (521)
Q Consensus 252 ~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~---~~~~d~~~dil 328 (521)
++.+|++++|..|.|||..+..... ....+++++|+|+|++++|.++++... ....++.++++
T Consensus 158 ~v~~d~~~~v~~~~ekp~~~~~~~~--------------~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l 223 (361)
T TIGR02091 158 VMQVDEDGRIVDFEEKPANPPSIPG--------------MPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDII 223 (361)
T ss_pred EEEECCCCCEEEEEECCCCcccccc--------------cccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHH
Confidence 9999888999999999854321000 001248999999999999866665422 12345668999
Q ss_pred HhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCC-CcCCCceee-cccccceEECCC
Q 009971 329 PGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQP-RYLPPSKML-DADVTDSVIGEG 406 (521)
Q Consensus 329 ~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~-~~~~~~~i~-~~~i~~~~Ig~~ 406 (521)
+.+++ ..++++|.++++|.||||+++|++|++.++.+. +... .+....++.+.. ++.|++.+. .+.+.+++||++
T Consensus 224 ~~l~~-~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~-~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~ 300 (361)
T TIGR02091 224 PRALE-EGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVV-PPFD-LYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSEG 300 (361)
T ss_pred HHHhh-cCceEEEeeCCEEEECCCHHHHHHHHHHHhCCC-chhh-ccccCCceecCCCCCCCceEecCCCEEECCEECCC
Confidence 99998 459999999999999999999999999999765 3222 334445554332 344555555 346788999999
Q ss_pred cEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeC
Q 009971 407 CVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 407 ~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 486 (521)
|+|+.+.|.+|+||++|.|+++|+|.+|+++++ +.||++++|++|+|+++++||.+++|.|
T Consensus 301 ~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~v~~~~~l~~~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 301 CIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD-------------------VGIGRGAVIRNAIIDKNVRIGEGVVIGN 361 (361)
T ss_pred CEECCCEEEccEECCCCEECCCCEEeeeEEeCC-------------------CEECCCCEEeeeEECCCCEECCCCEeCC
Confidence 999886778999999999999999999999887 6899999999999999999999998864
No 10
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=4e-49 Score=410.91 Aligned_cols=350 Identities=26% Similarity=0.461 Sum_probs=275.7
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChH-HHHHHHHHhhhccCCCCcC
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA-SLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~-~i~~~l~~~~~~~~~~~~~ 167 (521)
+|+|||||+|+|+||+|||..+||||+||+|++|||+|+|++|.++|+++|+|++++..+ ++++||.+...|++... .
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~-~ 80 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRK-R 80 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCcccc-c
Confidence 689999999999999999999999999998755999999999999999999999999887 99999987555543211 1
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (521)
.+...++ .| +.+.|.+|+++++.+++++++....++||+++||++++.|+.+++++|+++++++|+++.+.+.+++
T Consensus 81 ~~~~~~~--~~--e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~ 156 (369)
T TIGR02092 81 DGLFVFP--YN--DRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADA 156 (369)
T ss_pred CcEEEEe--cc--CCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHc
Confidence 1111111 22 1222335777788888888853234789999999999999999999999999999999988764455
Q ss_pred ccee-EEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCC-CCChhh
Q 009971 248 TAFG-LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDFGS 325 (521)
Q Consensus 248 ~~~g-~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~-~~d~~~ 325 (521)
..|+ ++..|++|+|..+.+++.... ....++|+|+|++++|.+++++..+. ..++..
T Consensus 157 ~~~g~vv~~~~~g~v~~~~~~~~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 215 (369)
T TIGR02092 157 SEYDTILRFDESGKVKSIGQNLNPEE---------------------EENISLDIYIVSTDLLIELLYECIQRGKLTSLE 215 (369)
T ss_pred cccCcEEEEcCCCCEEeccccCCCCC---------------------cceeeeeEEEEEHHHHHHHHHHHhhcCccccHH
Confidence 6774 556777788887754332111 13678999999999876676543332 224456
Q ss_pred cchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCceee-cccccceEEC
Q 009971 326 EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKML-DADVTDSVIG 404 (521)
Q Consensus 326 dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig 404 (521)
++++.+++ +.++++|.++++|.||||+++|++||+.++++...... +.....+++....+.+|+.++ ++.|.+|+||
T Consensus 216 d~i~~~~~-~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~p~~i~~~~~i~~~~Ig 293 (369)
T TIGR02092 216 ELIRENLK-ELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSL-FYSSQGPIYTKVKDEPPTYYAENSKVENSLVA 293 (369)
T ss_pred HHHHHHhc-cCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhh-cCCCCCceeeccCCCCCcEEcCCCEEEEeEEc
Confidence 88998886 67899999999999999999999999999877532111 112233555555566888886 7778999999
Q ss_pred CCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEE
Q 009971 405 EGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 484 (521)
Q Consensus 405 ~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i 484 (521)
+||.|+ +.|.+|+||++|+|+++|+|.+++++++ +.|++++++.+|+|+++++||+++++
T Consensus 294 ~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~I~~~~~i~~~ii~~~~~v~~~~~~ 353 (369)
T TIGR02092 294 NGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQR-------------------TVIGEGAHLENVIIDKDVVIEPNVKI 353 (369)
T ss_pred CCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCC-------------------CEECCCCEEEEEEECCCCEECCCCEe
Confidence 999997 4688999999999999999999999987 68999999999999999999999999
Q ss_pred eC
Q 009971 485 VN 486 (521)
Q Consensus 485 ~~ 486 (521)
.+
T Consensus 354 ~~ 355 (369)
T TIGR02092 354 AG 355 (369)
T ss_pred CC
Confidence 65
No 11
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.2e-47 Score=379.93 Aligned_cols=385 Identities=25% Similarity=0.301 Sum_probs=316.3
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
+++.+||||||.||||. ..+||-|.|++|+ ||++|+++.+...+.+++.+|.++..+++++.+.+.. .
T Consensus 1 ~~~~~vILAAGkGTRMk---S~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~--------~ 68 (460)
T COG1207 1 MSLSAVILAAGKGTRMK---SDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERD--------D 68 (460)
T ss_pred CCceEEEEecCCCcccc---CCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhcccc--------C
Confidence 35899999999999999 6899999999997 9999999999999999999999999999999988631 1
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
..+ +++.. ++||++|+.+++++|.+...+++|+++||+ |...+ ++.|++.|...++.++++....++
T Consensus 69 v~~--v~Q~e--------qlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~d- 137 (460)
T COG1207 69 VEF--VLQEE--------QLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDD- 137 (460)
T ss_pred ceE--EEecc--------cCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCC-
Confidence 122 22322 399999999999999443456899999999 77655 889999999999999999988664
Q ss_pred cCcceeEEEeCCCCCeEEeeeCCCh-hhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhC---CCCC
Q 009971 246 RATAFGLMKIDEEGRIIEFSEKPKG-EQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGAN 321 (521)
Q Consensus 246 ~~~~~g~v~~d~~grV~~i~ekp~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~---~~~~ 321 (521)
|..||-+..+++|+|..|.|..+. +..+++ ..+++|+|+|+.+.|.++|..-. ...+
T Consensus 138 -P~GYGRIvr~~~g~V~~IVE~KDA~~eek~I------------------~eiNtGiy~f~~~~L~~~L~~l~nnNaqgE 198 (460)
T COG1207 138 -PTGYGRIVRDGNGEVTAIVEEKDASEEEKQI------------------KEINTGIYAFDGAALLRALPKLSNNNAQGE 198 (460)
T ss_pred -CCCcceEEEcCCCcEEEEEEcCCCCHHHhcC------------------cEEeeeEEEEcHHHHHHHHHHhccccccCc
Confidence 889999999989999999985554 333333 48999999999887777776422 2335
Q ss_pred ChhhcchHhhhhCCceEEEEEecce--EEecCCHHHHHHHhhhcccCC------------CCCccccccCCCcccCCCCc
Q 009971 322 DFGSEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKKP------------IPDFRYFYDRSAPIYTQPRY 387 (521)
Q Consensus 322 d~~~dil~~li~~~~~I~~~~~~g~--w~dIgt~edy~~An~~ll~~~------------~~~~~~~~~~~~~i~~~~~~ 387 (521)
.|.+|++..+...+.++.++..+++ ..-+++-..+.++++.|.++. .|.-. |++.+..|..++.+
T Consensus 199 YYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~-~i~~dv~ig~DvvI 277 (460)
T COG1207 199 YYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATT-YIRGDVEIGRDVVI 277 (460)
T ss_pred EeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeE-EEcCcEEECCceEE
Confidence 5779999999888999999999865 577889888888887664432 25544 77777777777777
Q ss_pred CCCceee-------------cccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECC-----ccccccccc
Q 009971 388 LPPSKML-------------DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGA-----DYYETDADR 448 (521)
Q Consensus 388 ~~~~~i~-------------~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~-----~~~e~~~~~ 448 (521)
.|++.+. +|.|+||.|++++.|.. +.|.+|.||++|.||+.++|.+...+++ +|+|+ +
T Consensus 278 ~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEv---K 354 (460)
T COG1207 278 EPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEV---K 354 (460)
T ss_pred ecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEE---e
Confidence 7755443 45567788888888888 8888899999999999988875544443 47887 9
Q ss_pred cccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCcee-ecCCeEEcCC-----eEEECCCCEECCCccC
Q 009971 449 RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAAR-ETDGYFIKSG-----IVTIIKDALIPSGTII 521 (521)
Q Consensus 449 ~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~-~~~~~~I~~g-----~v~I~~~~~i~~gsvi 521 (521)
++.||+|. ..++=++|.++.||+++.||++++..|+|+..+..+ ||+++|||++ +|+||+++.|++||+|
T Consensus 355 ~a~ig~gs---Ka~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStI 430 (460)
T COG1207 355 KATIGKGS---KAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 430 (460)
T ss_pred cccccCCc---cccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcEEcccceE
Confidence 99999999 999999999999999999999999999999988876 9999999999 5999999999999986
No 12
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=4.2e-45 Score=378.50 Aligned_cols=332 Identities=23% Similarity=0.341 Sum_probs=239.3
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecC-ChHHHHHHHHHhhhccCCCCcCCC
Q 009971 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF-NSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 91 ~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~-~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
+|||||||.|+||+|||..+||||+|++|+ |||+|++++|.++|+++|++++++ +.+++.+|+.+...|++ .
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~~~~~~------~ 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEGERFGA------K 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhcccccCc------e
Confidence 589999999999999999999999999987 999999999999999999999999 88999999986433321 1
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCcc
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATA 249 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~ 249 (521)
+.++. + .+..||+++++.++.+++ .++||+++||++++.++.++++.|+++++++++++.+.++ +..
T Consensus 74 -~~~~~--~-----~~~~G~~~al~~a~~~l~---~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~--~~~ 140 (353)
T TIGR01208 74 -ITYIV--Q-----GEPLGLAHAVYTARDFLG---DDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD--PTA 140 (353)
T ss_pred -EEEEE--C-----CCCCCHHHHHHHHHHhcC---CCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC--hhh
Confidence 22221 2 124899999999998885 3689999999999999999999999999999998877653 567
Q ss_pred eeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCC--CCChhhcc
Q 009971 250 FGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG--ANDFGSEV 327 (521)
Q Consensus 250 ~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~--~~d~~~di 327 (521)
|+.+.++++++|.+|.|||..+. +.+.++|+|+|++.+++ ++++..+. ...+..++
T Consensus 141 ~g~~~~~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~~l~d~ 198 (353)
T TIGR01208 141 FGVAVLEDGKRILKLVEKPKEPP---------------------SNLAVVGLYMFRPLIFE-AIKNIKPSWRGELEITDA 198 (353)
T ss_pred CeEEEEcCCCcEEEEEECCCCCC---------------------ccceEEEEEEECHHHHH-HHHhcCCCCCCcEEHHHH
Confidence 99888876679999999986432 24889999999997775 55433221 22335789
Q ss_pred hHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCceee-cccccceEECCC
Q 009971 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEG 406 (521)
Q Consensus 328 l~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~~ 406 (521)
++.+++.+.++++|.++++|.||||++||++||+.++.+.... +. .+.+.+.+.+|+.+. ++.|.+++|+.+
T Consensus 199 l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~~---~~----~i~~~~~i~~~~~i~~~~~i~~~~i~~~ 271 (353)
T TIGR01208 199 IQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVERE---VQ----GVDDESKIRGRVVVGEGAKIVNSVIRGP 271 (353)
T ss_pred HHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhcccc---cC----CcCCCCEEcCCEEECCCCEEeCCEEECC
Confidence 9999987889999999999999999999999999998753221 10 133344444554443 344444555444
Q ss_pred cEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCC-CEEeeeEECCCCEECCCcEE
Q 009971 407 CVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKN-SHIKRAIIDKNARIGDNVKI 484 (521)
Q Consensus 407 ~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~-~~i~~~ii~~~~~Ig~~~~i 484 (521)
|.|++ |.|.+++|+.+|.||++|+|+++.+.+ +.+++++ .|+.+ +++.+++|++++.|++++.+
T Consensus 272 ~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~-----------s~i~~~~---~i~~~~~~~~~~ii~~~~~i~~~~~~ 337 (353)
T TIGR01208 272 AVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEH-----------SIVLDES---VIEGVQARIVDSVIGKKVRIKGNRRR 337 (353)
T ss_pred cEECCCCEEcCcEECCCCEECCCCEEeeeEEEe-----------eEEcCCC---EEcCCcceeecCEEcCCCEECCCccc
Confidence 55554 555555555555555555554333311 2222222 45544 25555566666665555555
Q ss_pred e
Q 009971 485 V 485 (521)
Q Consensus 485 ~ 485 (521)
.
T Consensus 338 ~ 338 (353)
T TIGR01208 338 P 338 (353)
T ss_pred c
Confidence 4
No 13
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.2e-43 Score=379.95 Aligned_cols=392 Identities=20% Similarity=0.283 Sum_probs=284.0
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
|++++|||||||.|+||++ .+||+|+|++|+ |||+|+|++|.++|++++++++++..+++.+|+.+..
T Consensus 1 m~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~~-------- 68 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGDG-------- 68 (459)
T ss_pred CCcceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccCC--------
Confidence 4578999999999999984 789999999987 9999999999999999999999999999999987521
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe--eccccHHHHHHHHHhcCCcEEEEEEecCc
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDE 244 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~~ 244 (521)
.+.++. + .+.+||+++++.++.++++. .++||+++||+ +.+.++.++++.|.+.+++++++..+.++
T Consensus 69 ---~i~~~~--~-----~~~~Gt~~al~~a~~~l~~~-~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~ 137 (459)
T PRK14355 69 ---DVSFAL--Q-----EEQLGTGHAVACAAPALDGF-SGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLEN 137 (459)
T ss_pred ---ceEEEe--c-----CCCCCHHHHHHHHHHHhhcc-CCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcCC
Confidence 133321 1 11389999999999988631 46899999998 44677999999998888888888766543
Q ss_pred ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC---CCC
Q 009971 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GAN 321 (521)
Q Consensus 245 ~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~ 321 (521)
+..|+.+.+|++++|..+.|||.....+ ..++++++|+|+|++++|.++++...+ ...
T Consensus 138 --~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e 198 (459)
T PRK14355 138 --PFGYGRIVRDADGRVLRIVEEKDATPEE-----------------RSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGE 198 (459)
T ss_pred --CCcCCEEEEcCCCCEEEEEEcCCCChhH-----------------hhccEEEEEEEEEeHHHHHHHHHHcCccccCCc
Confidence 4578998888889999999886422110 013588999999999976666653222 123
Q ss_pred ChhhcchHhhhhCCceEEEEEecce--EEecCCHHHHHHHhhhcccCCC-----CCccccccCCC-cccCCCCcCCCcee
Q 009971 322 DFGSEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKKPI-----PDFRYFYDRSA-PIYTQPRYLPPSKM 393 (521)
Q Consensus 322 d~~~dil~~li~~~~~I~~~~~~g~--w~dIgt~edy~~An~~ll~~~~-----~~~~~~~~~~~-~i~~~~~~~~~~~i 393 (521)
.+.+++++.+++++.++++|+++++ |+|++|+++|++|++.++.... .... ++++.+ .+...+.+.+++.+
T Consensus 199 ~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~-~i~~~~~~i~~~v~ig~~~~I 277 (459)
T PRK14355 199 YYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVT-LIDPETTYIDRGVVIGRDTTI 277 (459)
T ss_pred eeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCE-EECCCceEECCCeEEcCCCEE
Confidence 4468999999998889999999987 9999999999999876553211 1112 444543 35555556566655
Q ss_pred e-cccc-cceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCcccccccc--ccccccCCCc--------cee
Q 009971 394 L-DADV-TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDAD--RRFLAAKGSV--------PIG 460 (521)
Q Consensus 394 ~-~~~i-~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~--~~~~~~~~~~--------~~~ 460 (521)
. ++.| .+++||++|.|+. |.|.+++||++|.|+++|+|.++++.++.+....+. ..+.+++++. .+.
T Consensus 278 ~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ 357 (459)
T PRK14355 278 YPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIV 357 (459)
T ss_pred eCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCE
Confidence 4 4444 4688999999987 888899999999999999998887776654321111 2233344331 122
Q ss_pred eCCCCE------EeeeEECCCCEECCCcEEeCCCccCC-ceeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 461 IGKNSH------IKRAIIDKNARIGDNVKIVNSDSVQE-AARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 461 Ig~~~~------i~~~ii~~~~~Ig~~~~i~~~~~~~~-~~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
||+++. +.+++|+++|.||.++++.+.++... ...+|++++|+.+. ++||++++|++||+|
T Consensus 358 ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v 430 (459)
T PRK14355 358 MGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTV 430 (459)
T ss_pred ECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 333333 33568888888888888766554433 23455666555552 788999999999875
No 14
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.8e-43 Score=378.11 Aligned_cols=389 Identities=20% Similarity=0.250 Sum_probs=275.8
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
..+.|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++++|++++..+++.+++.+..
T Consensus 3 ~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~--------- 69 (482)
T PRK14352 3 RPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA--------- 69 (482)
T ss_pred CCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC---------
Confidence 357899999999999996 689999999986 9999999999999999999999998888888886521
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ec-cccHHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
.. +.++. + ++..||+++++.++.++....+++||+++||+ ++ ..++.++++.|++++++++++..+.+
T Consensus 70 ~~-~~~~~--~-----~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~-- 139 (482)
T PRK14352 70 PE-VDIAV--Q-----DEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLD-- 139 (482)
T ss_pred Cc-cEEEe--C-----CCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecC--
Confidence 01 22221 1 22489999999999888543346899999998 44 46799999999888888887776654
Q ss_pred cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCC---CCC
Q 009971 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---AND 322 (521)
Q Consensus 246 ~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~d 322 (521)
++..|+.+..|++++|.+|.|||.....+ ....++++|+|+|++++|.++++...+. ...
T Consensus 140 ~p~~yg~~~~~~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~ 202 (482)
T PRK14352 140 DPTGYGRILRDQDGEVTAIVEQKDATPSQ-----------------RAIREVNSGVYAFDAAVLRSALARLSSDNAQGEL 202 (482)
T ss_pred CCCCCCEEEECCCCCEEEEEECCCCCHHH-----------------hhcceEEEEEEEEEHHHHHHHHHhhCccccCCcE
Confidence 36689988888889999999998753321 0124789999999999997776643321 234
Q ss_pred hhhcchHhhhhCCceEEEEEecceEEecCCHHHH------HHHhhhcccCCC--------CCccccccCCCcccCCCCcC
Q 009971 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAF------YNANLGITKKPI--------PDFRYFYDRSAPIYTQPRYL 388 (521)
Q Consensus 323 ~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy------~~An~~ll~~~~--------~~~~~~~~~~~~i~~~~~~~ 388 (521)
+.+|+++.+++.+.++++|+++++|.|+++++.| ..+++.++.... |... ++++...|+..+++.
T Consensus 203 ~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~-~i~~~v~ig~~~~I~ 281 (482)
T PRK14352 203 YLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATT-WIDVDVTIGRDVVIH 281 (482)
T ss_pred eHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeE-EEeCCEEECCCcEEe
Confidence 4689999999988899999999999999999887 445544433211 1122 444444454555554
Q ss_pred CCceee-------------cccccceEECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCc-cccccc-ccccccc
Q 009971 389 PPSKML-------------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGAD-YYETDA-DRRFLAA 453 (521)
Q Consensus 389 ~~~~i~-------------~~~i~~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~-~~e~~~-~~~~~~~ 453 (521)
|++.+. ++.|.+++||++|.|+++.+.+++||.++.||++|.|....+++++ ...... ...+.|+
T Consensus 282 ~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~ 361 (482)
T PRK14352 282 PGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIG 361 (482)
T ss_pred CCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEEC
Confidence 444442 2334445555555555444556677777777777777644444432 111111 1345566
Q ss_pred CCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCc-------cCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 454 KGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDS-------VQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 454 ~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~-------~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
.++ .|++.+++.+++||++|.||.++++.+.++ +++.+++|.++.|..+ ++||++++|++|++|
T Consensus 362 ~~~---~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~-~~Ig~~~~igags~v 432 (482)
T PRK14352 362 RGT---KVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAP-VTVGDGAYTGAGTVI 432 (482)
T ss_pred CCc---EEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCC-CEECCCcEECCCCEE
Confidence 555 677777788899999999999999987543 4444455555555555 789999999999875
No 15
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.8e-42 Score=369.41 Aligned_cols=385 Identities=19% Similarity=0.234 Sum_probs=264.7
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
++|+|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+++.. .
T Consensus 6 ~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~-~--------- 71 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG-S--------- 71 (481)
T ss_pred CCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc-C---------
Confidence 469999999999999996 589999999987 99999999999999999999999988888888853 1
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe--eccccHHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
+ +.++. + .++.||+++++.++.+++. ..++||+++||+ +.+.++.++++.|+++++++|+++.+.++
T Consensus 72 -~-i~~v~--~-----~~~~Gt~~al~~~~~~l~~-~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~- 140 (481)
T PRK14358 72 -G-VAFAR--Q-----EQQLGTGDAFLSGASALTE-GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPD- 140 (481)
T ss_pred -C-cEEec--C-----CCcCCcHHHHHHHHHHhhC-CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCC-
Confidence 1 23332 1 2348999999999988752 235799999998 44567999999999999999988877653
Q ss_pred cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhC---CCCCC
Q 009971 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF---PGAND 322 (521)
Q Consensus 246 ~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~---~~~~d 322 (521)
+..||.+.+|++++|.+|.|||.....+ ....++++|+|+|++++++ +++... ...+.
T Consensus 141 -~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~~~~~-~~~~i~~~~~~ge~ 201 (481)
T PRK14358 141 -ATGYGRIVRGADGAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDARAPE-LARRIGNDNKAGEY 201 (481)
T ss_pred -CCCceEEEECCCCCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEchHHHH-HHHhcCCCccCCeE
Confidence 4579999999889999999998643211 0124789999999966532 333211 11233
Q ss_pred hhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhh-cccCCC-------------CCccccccCCCcccCCCCcC
Q 009971 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLG-ITKKPI-------------PDFRYFYDRSAPIYTQPRYL 388 (521)
Q Consensus 323 ~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~-ll~~~~-------------~~~~~~~~~~~~i~~~~~~~ 388 (521)
+.+|+++.+++.+.++++|.++++|..++...+|+.+++. ++++.. |... ++.+...|+.++.+.
T Consensus 202 ~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~i~~~~~Ig~~~~I~ 280 (481)
T PRK14358 202 YLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTI-LIEDTVTLGRDVTIE 280 (481)
T ss_pred EHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCee-eccCCcEECCCCEEe
Confidence 4579999999878899999999998888887777676654 322110 1111 122233333333333
Q ss_pred CCceeecccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCcccccccc--ccccccCCCc--------
Q 009971 389 PPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDAD--RRFLAAKGSV-------- 457 (521)
Q Consensus 389 ~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~--~~~~~~~~~~-------- 457 (521)
+++.+. .++.||++|.|+. |.|.+|+||++|.|+++++|.++++..+.+....+. ..+.||+++.
T Consensus 281 ~~~~I~----~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~ 356 (481)
T PRK14358 281 PGVLLR----GQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETK 356 (481)
T ss_pred CCcEEe----CCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEEC
Confidence 333332 2355666666665 666666677777776666666655555443322221 1233333330
Q ss_pred ------ceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCc-eeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 458 ------PIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEA-ARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 458 ------~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~-~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
-+.||+.+.+.+++||+||.||.++++.|.++.... +.+|++++|+.+. ++||++++|++||+|
T Consensus 357 ~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs~v 432 (481)
T PRK14358 357 NARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAV 432 (481)
T ss_pred CceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEE
Confidence 013344444567889999999999999886554333 3566666666662 678999999998864
No 16
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=6.7e-42 Score=365.82 Aligned_cols=382 Identities=21% Similarity=0.235 Sum_probs=260.4
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
|+|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++++|++++..+.+.+++.+ +.
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~-~~---------- 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN-RD---------- 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC-CC----------
Confidence 6899999999999996 799999999987 99999999999999999999999998888888875 11
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ec-cccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEKRA 247 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (521)
+.++... . ..|+++++++++.++++ .++|++++||+ ++ +.++..+++.|.+. ..++++.+.+ ++
T Consensus 66 -i~~~~~~----~---~~G~~~ai~~a~~~l~~--~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~--~~ 131 (451)
T TIGR01173 66 -VNWVLQA----E---QLGTGHAVLQALPFLPD--DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLP--DP 131 (451)
T ss_pred -cEEEEcC----C---CCchHHHHHHHHHhcCC--CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecC--CC
Confidence 2222111 1 27999999999988853 36899999998 44 46699999988664 3666666653 35
Q ss_pred cceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCC---CCChh
Q 009971 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---ANDFG 324 (521)
Q Consensus 248 ~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~d~~ 324 (521)
..|+.+..|++++|..+.|||...... ...+++++|+|+|++++|.++++..... ...+.
T Consensus 132 ~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~ 194 (451)
T TIGR01173 132 TGYGRIIRENDGKVTAIVEDKDANAEQ-----------------KAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYL 194 (451)
T ss_pred CCCCEEEEcCCCCEEEEEEcCCCChHH-----------------hcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeH
Confidence 568888888889999999987543211 0135889999999999876666543221 22345
Q ss_pred hcchHhhhhCCceEEEEEecce--EEecCCHHHHHHHhhhcccCC------------CCCccccccCCCcccCCCCcC--
Q 009971 325 SEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKKP------------IPDFRYFYDRSAPIYTQPRYL-- 388 (521)
Q Consensus 325 ~dil~~li~~~~~I~~~~~~g~--w~dIgt~edy~~An~~ll~~~------------~~~~~~~~~~~~~i~~~~~~~-- 388 (521)
+++++.+++++.++++|.++++ |++++|+++|.+++..+..+. .|... .+.+...|..++.+.
T Consensus 195 ~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~i~~~~~ig~~~~i~~~ 273 (451)
T TIGR01173 195 TDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARF-DIRGTVEIGRDVEIDPN 273 (451)
T ss_pred HHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeE-EECCccEECCCCEEcCC
Confidence 7999999987889999999987 999999999988866443211 01001 122222222222222
Q ss_pred ----------CCceee-cccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcc-eEEECCcccccccc-ccccccC
Q 009971 389 ----------PPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIED-TLLMGADYYETDAD-RRFLAAK 454 (521)
Q Consensus 389 ----------~~~~i~-~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~-s~i~~~~~~e~~~~-~~~~~~~ 454 (521)
+.+.+. ++.+.+++||++|.|++ |.|.+++||.+|.||++++|.+ +++.++.......+ .++.|++
T Consensus 274 ~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~ 353 (451)
T TIGR01173 274 VILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGK 353 (451)
T ss_pred eEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECC
Confidence 222222 33345566666666665 6666666666666666666653 33322222111111 2345555
Q ss_pred CCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCC-ceeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 455 GSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQE-AARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 455 ~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~-~~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
++ .|++.+.+.+|.|++++.||.++++.+.++..+ ...++++++|+.+. ++||++++|++|++|
T Consensus 354 ~~---~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v 423 (451)
T TIGR01173 354 GS---KAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTV 423 (451)
T ss_pred Cc---EecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccCCEE
Confidence 55 556666666788889999999988877544433 24456666665552 789999999999875
No 17
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.9e-42 Score=368.08 Aligned_cols=385 Identities=19% Similarity=0.227 Sum_probs=264.1
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
|++|+|||||||.|+||+ ..+||+|+|++|+ |||+|+++.|.++|++++++++++..+++.+++...
T Consensus 3 ~~~~~aiIlAaG~gtRl~---~~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~--------- 69 (456)
T PRK09451 3 NSAMSVVILAAGKGTRMY---SDLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE--------- 69 (456)
T ss_pred CCCceEEEEcCCCCCcCC---CCCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC---------
Confidence 567999999999999998 3699999999986 999999999999999999999999888888888641
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe--eccccHHHHHHHHHhcCCcEEEEEEecCc
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDE 244 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~~ 244 (521)
.+.++... +..||+++++.++.++++ .++||+++||+ +.+.++.++++.|.+.+ +++++.+.+
T Consensus 70 ---~~~~i~~~-------~~~Gt~~al~~a~~~l~~--~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~~- 134 (456)
T PRK09451 70 ---PLNWVLQA-------EQLGTGHAMQQAAPFFAD--DEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKLD- 134 (456)
T ss_pred ---CcEEEECC-------CCCCcHHHHHHHHHhhcc--CCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEcC-
Confidence 12222111 137999999999987752 46899999998 44677999998886544 445555544
Q ss_pred ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC---CCC
Q 009971 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GAN 321 (521)
Q Consensus 245 ~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~ 321 (521)
++..||.+.. ++++|.+|.|||.....+ ...+++++|+|+|+++.|.+++++..+ ..+
T Consensus 135 -~~~~yG~v~~-~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e 195 (456)
T PRK09451 135 -NPTGYGRITR-ENGKVVGIVEQKDATDEQ-----------------RQIQEINTGILVANGADLKRWLAKLTNNNAQGE 195 (456)
T ss_pred -CCCCceEEEe-cCCeEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHhcCCccccCc
Confidence 3567998754 578999999998632211 012489999999999988777764332 133
Q ss_pred ChhhcchHhhhhCCceEEEEE------ecce--EEecCCHHHHHHHhhh--cccCC----CCCcc-----------cccc
Q 009971 322 DFGSEVIPGATSIGMRVQAYL------YDGY--WEDIGTIEAFYNANLG--ITKKP----IPDFR-----------YFYD 376 (521)
Q Consensus 322 d~~~dil~~li~~~~~I~~~~------~~g~--w~dIgt~edy~~An~~--ll~~~----~~~~~-----------~~~~ 376 (521)
.+.+|+++.+++++.++++|. +.|+ |.|++++++|+++|+. ++... .|... .+++
T Consensus 196 ~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~~~I~ 275 (456)
T PRK09451 196 YYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEID 275 (456)
T ss_pred eeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCCCEEc
Confidence 456899999999888999996 4566 7889999999999842 22111 11100 0222
Q ss_pred CCCcccCCCCcCCCceee-cccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEc-ceEEECCccccccc-cccccc
Q 009971 377 RSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIE-DTLLMGADYYETDA-DRRFLA 452 (521)
Q Consensus 377 ~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~-~s~i~~~~~~e~~~-~~~~~~ 452 (521)
+.+.|...+.+.+++.+. ++.|.+++|+++|.|+. |.|.+++||.++.|++++.|. ++.+.++.-....+ -+++.+
T Consensus 276 ~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i 355 (456)
T PRK09451 276 TNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARL 355 (456)
T ss_pred CCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceee
Confidence 333333333444444443 44455666677777765 666666666666666666665 23322221111111 135566
Q ss_pred cCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCC-ceeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 453 AKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQE-AARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 453 ~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~-~~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
++|+ .+++.+.+.+|.||++|.||+++++.+.++... ..++||+++|+.+. ++||++++|++||+|
T Consensus 356 ~~~~---~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v 427 (456)
T PRK09451 356 GKGS---KAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTV 427 (456)
T ss_pred CCCC---ccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEE
Confidence 6665 566666677889999999999999887655333 24566666666552 678899999998875
No 18
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.6e-41 Score=360.80 Aligned_cols=376 Identities=18% Similarity=0.228 Sum_probs=278.8
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
|+++|||||||.||||++ .+||||+|++|+ |||+|+++.|.++ +++|+|++++..+++.+++.+.+.
T Consensus 1 m~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~~-------- 67 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYFP-------- 67 (430)
T ss_pred CCccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcCC--------
Confidence 458999999999999996 799999999986 9999999999987 799999999999999999876211
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-eccccHHHHHHHHHhcCCcEEEEEEecCccc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMDYERFIQAHRETDADITVAALPMDEKR 246 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~dl~~ll~~h~~~~aditi~~~~~~~~~ 246 (521)
.+.++.... ..+.||+++++.+.. ..++||+++||. +... +.++.+.+.++++++.+.+.++
T Consensus 68 --~v~~~~~~~-----~~~~gt~~al~~~~~-----~~d~vlv~~gD~p~~~~---~~l~~l~~~~~~~~v~~~~~~~-- 130 (430)
T PRK14359 68 --GVIFHTQDL-----ENYPGTGGALMGIEP-----KHERVLILNGDMPLVEK---DELEKLLENDADIVMSVFHLAD-- 130 (430)
T ss_pred --ceEEEEecC-----ccCCCcHHHHhhccc-----CCCeEEEEECCccCCCH---HHHHHHHhCCCCEEEEEEEcCC--
Confidence 134432211 113789999977321 247899999999 4332 3344455567788888776653
Q ss_pred CcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC---CCCCh
Q 009971 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDF 323 (521)
Q Consensus 247 ~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~d~ 323 (521)
+..|+.+..+ +|+|..+.|++...... ...++.++|+|+|++++|.+++..... ....+
T Consensus 131 ~~~~g~v~~d-~g~v~~i~e~~~~~~~~-----------------~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~ 192 (430)
T PRK14359 131 PKGYGRVVIE-NGQVKKIVEQKDANEEE-----------------LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYY 192 (430)
T ss_pred CccCcEEEEc-CCeEEEEEECCCCCccc-----------------ccceEEEeEEEEEEHHHHHHHHHhcCcccccCcee
Confidence 4568887765 68999999887532100 013588999999999999866553221 12345
Q ss_pred hhcchHhhhhCCceEEEEEec-ceEEecCCHHHHHHHhhhcccCCC------------CCccccccCCCcccCCCCcCCC
Q 009971 324 GSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITKKPI------------PDFRYFYDRSAPIYTQPRYLPP 390 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~-g~w~dIgt~edy~~An~~ll~~~~------------~~~~~~~~~~~~i~~~~~~~~~ 390 (521)
.+|+++.+++.+.+++++..+ ++|.||+|++||+.|+..+..+.. +... ++.+.+.|...+.+.++
T Consensus 193 l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~-~~~~~~~i~g~~~ig~~ 271 (430)
T PRK14359 193 LTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETI-YIESGVEFEGECELEEG 271 (430)
T ss_pred hhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCee-EECCCcEEcCceEECCC
Confidence 689999999878999999997 589999999999999865543221 1111 45555666666666777
Q ss_pred ceee-cccccceEECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEee
Q 009971 391 SKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR 469 (521)
Q Consensus 391 ~~i~-~~~i~~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~ 469 (521)
+.+. ++.+.+++||++|.|+++.|.+|+||+++.|+++++|+++.+..+. |. .++.+ +++ .||+.+.|.+
T Consensus 272 ~~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~--~i---~~~~~-~~~---~i~~~~~i~d 342 (430)
T PRK14359 272 VRILGKSKIENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFV--ET---KNAKL-NGV---KAGHLSYLGD 342 (430)
T ss_pred CEECCCeEEEeeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcE--EE---cccEe-ccc---cccccccccC
Confidence 7765 5667789999999998878899999999999999999888776542 22 33455 444 8999999999
Q ss_pred eEECCCCEECCCcEEeCCCccCC-ceeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 470 AIIDKNARIGDNVKIVNSDSVQE-AARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 470 ~ii~~~~~Ig~~~~i~~~~~~~~-~~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
|+||++|.||.++++.+.++..+ .+.+|++++|+.+. ++||++++|++|++|
T Consensus 343 ~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v 400 (430)
T PRK14359 343 CEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTV 400 (430)
T ss_pred CEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 99999999999999987654333 23455555555552 789999999999875
No 19
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=6.2e-41 Score=358.92 Aligned_cols=383 Identities=18% Similarity=0.197 Sum_probs=250.5
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
...+.|||||||.|+||+ ...||+|+|++|+ |||+|++++|...++++|+|++++..+.+.+++.+.
T Consensus 3 ~~~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~--------- 69 (456)
T PRK14356 3 ASTTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPDE--------- 69 (456)
T ss_pred CcceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcccc---------
Confidence 346899999999999997 4799999999987 999999999999999999999999888887776541
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecCc
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDE 244 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~~ 244 (521)
.++++. + .+..||+++++.++++++....++|++++||+ +++ .++..+++.|+ +++++++..+.++
T Consensus 70 ---~~~~v~--~-----~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~~ 137 (456)
T PRK14356 70 ---DARFVL--Q-----EQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLPD 137 (456)
T ss_pred ---CceEEE--c-----CCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcCC
Confidence 122322 1 11389999999999888653457899999999 554 56999998875 5677777776553
Q ss_pred ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC---CCC
Q 009971 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GAN 321 (521)
Q Consensus 245 ~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~ 321 (521)
+..||.+.. ++|+|..+.|||+...... ...+.++++|+|+|+++++..+++.... ..+
T Consensus 138 --~~~~g~v~~-~~g~V~~~~ek~~~~~~~~---------------~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e 199 (456)
T PRK14356 138 --PGAYGRVVR-RNGHVAAIVEAKDYDEALH---------------GPETGEVNAGIYYLRLDAVESLLPRLTNANKSGE 199 (456)
T ss_pred --CCCceEEEE-cCCeEEEEEECCCCChHHh---------------hhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCc
Confidence 567888876 5789999999876321100 0013588999999999988766553221 223
Q ss_pred ChhhcchHhhhhCCceEEEEEecc--eEEecCCHHHHHHHhhhcccCCCC------------CccccccCCCcccCCCCc
Q 009971 322 DFGSEVIPGATSIGMRVQAYLYDG--YWEDIGTIEAFYNANLGITKKPIP------------DFRYFYDRSAPIYTQPRY 387 (521)
Q Consensus 322 d~~~dil~~li~~~~~I~~~~~~g--~w~dIgt~edy~~An~~ll~~~~~------------~~~~~~~~~~~i~~~~~~ 387 (521)
.+.+++++.+++.+.+++++.+++ .|++|+|++||.+|+..+..+... .-. ++++.+.+...+.+
T Consensus 200 ~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~-~i~~~~~i~~~~~i 278 (456)
T PRK14356 200 YYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESV-RIGPRATIEPGAEI 278 (456)
T ss_pred EEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcE-EECCCcEECCCCEE
Confidence 456899999888788999999865 579999999999998766543211 001 22333333222222
Q ss_pred CCCceeecccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCcccccccc-------------------
Q 009971 388 LPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDAD------------------- 447 (521)
Q Consensus 388 ~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~------------------- 447 (521)
.+++.+. .++.||++|.|+. |.|.+++||++|.|+++|+|+++++.++...-..+.
T Consensus 279 ~~~~~i~----~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i 354 (456)
T PRK14356 279 YGPCEIY----GASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEM 354 (456)
T ss_pred eCCcEEe----CceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCcee
Confidence 2222111 2345555555554 555555555555555555554444443322211111
Q ss_pred ccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCc-------cCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 448 RRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDS-------VQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 448 ~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~-------~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
.++.+++++ .|++.+++.+++||+++.||+++.+.+.++ +++.+++|.++.|..+ ++||++++|++|++
T Consensus 355 ~~~~i~~~~---~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~-~~ig~~~~i~~~~~ 430 (456)
T PRK14356 355 KKAVLGKGA---KANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAP-VTIGDGALVGAGSV 430 (456)
T ss_pred eeeEecCCc---EecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCC-cEECCCCEEcCCCE
Confidence 223333333 344444555677777777777776655432 3333444444444444 78999999999987
Q ss_pred C
Q 009971 521 I 521 (521)
Q Consensus 521 i 521 (521)
|
T Consensus 431 v 431 (456)
T PRK14356 431 I 431 (456)
T ss_pred E
Confidence 5
No 20
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=8e-41 Score=357.08 Aligned_cols=384 Identities=19% Similarity=0.218 Sum_probs=268.0
Q ss_pred CCccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCC
Q 009971 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 86 ~~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (521)
+|+++.|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++++|++++..+.+.+++.+..
T Consensus 2 ~~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~~------- 70 (446)
T PRK14353 2 TDRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKIA------- 70 (446)
T ss_pred ccccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhccC-------
Confidence 45689999999999999984 589999999987 9999999999999999999999999888888876510
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecC
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
.. +.++. + ++..|++++++.++.+++. ..++|++++||+ +++ .++..+++ +.+.+++++++..+..
T Consensus 71 --~~-~~~~~--~-----~~~~G~~~sl~~a~~~l~~-~~~~~lv~~~D~P~i~~~~l~~l~~-~~~~~~~~~i~~~~~~ 138 (446)
T PRK14353 71 --PD-AEIFV--Q-----KERLGTAHAVLAAREALAG-GYGDVLVLYGDTPLITAETLARLRE-RLADGADVVVLGFRAA 138 (446)
T ss_pred --CC-ceEEE--c-----CCCCCcHHHHHHHHHHHhc-cCCCEEEEeCCcccCCHHHHHHHHH-hHhcCCcEEEEEEEeC
Confidence 01 12221 1 1137999999999988752 136899999998 555 45888887 4455677777776643
Q ss_pred cccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC---CC
Q 009971 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GA 320 (521)
Q Consensus 244 ~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~ 320 (521)
++..|+.+.. ++++|..+.|||...... ...+++++|+|+|+++.|.+++++... ..
T Consensus 139 --~~~~~g~~~~-~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~ 198 (446)
T PRK14353 139 --DPTGYGRLIV-KGGRLVAIVEEKDASDEE-----------------RAITLCNSGVMAADGADALALLDRVGNDNAKG 198 (446)
T ss_pred --CCCcceEEEE-CCCeEEEEEECCCCChHH-----------------hhceEEEEEEEEEEHHHHHHHHHhhcccCCCC
Confidence 3567888777 578999999987643211 012488999999999877666654322 12
Q ss_pred CChhhcchHhhhhCCceEEEEEec-ceEEecCCHHHHHHHhhhcccC------------CCCCccccccCCCcccCCCCc
Q 009971 321 NDFGSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITKK------------PIPDFRYFYDRSAPIYTQPRY 387 (521)
Q Consensus 321 ~d~~~dil~~li~~~~~I~~~~~~-g~w~dIgt~edy~~An~~ll~~------------~~~~~~~~~~~~~~i~~~~~~ 387 (521)
..+.+++++.+++.+.++++++.+ ++|.||+||+||..|+..+..+ ..|... ++++.+.|..++.+
T Consensus 199 ~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~I~~~~~i 277 (446)
T PRK14353 199 EYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETV-FFSYDTVIGRDVVI 277 (446)
T ss_pred cEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeE-EECCceEECCCCEE
Confidence 234678899998878899999997 5699999999999998644221 112212 44455556666666
Q ss_pred CCCceeecccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEc-ceEEECCcccccccc-ccccccCCCcceeeCCC
Q 009971 388 LPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIE-DTLLMGADYYETDAD-RRFLAAKGSVPIGIGKN 464 (521)
Q Consensus 388 ~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~-~s~i~~~~~~e~~~~-~~~~~~~~~~~~~Ig~~ 464 (521)
.|++.+. .++.||++|.|+. +.|.+++||++|+||++++|. ++++.++..+...+. .++.+++++ .|+++
T Consensus 278 ~~~~~I~----~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~---~i~~~ 350 (446)
T PRK14353 278 EPNVVFG----PGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGA---KVNHL 350 (446)
T ss_pred CCCCEEC----CCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCC---EECCe
Confidence 6665553 2456677777765 666677777777777777775 344433322222211 234444444 66777
Q ss_pred CEEeeeEECCCCEECCCcEEeCCC-------ccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 465 SHIKRAIIDKNARIGDNVKIVNSD-------SVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 465 ~~i~~~ii~~~~~Ig~~~~i~~~~-------~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+.+.+++|+++|.||.++++.+.+ .+++.+++|.+++|..+ ++||++++|++|++|
T Consensus 351 ~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~-~~Ig~~~~ig~~s~v 413 (446)
T PRK14353 351 TYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAP-VTIGDGAYIASGSVI 413 (446)
T ss_pred eEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCC-CEECCCCEECCCCEE
Confidence 777888999999999998885543 34444555555555555 778999999998875
No 21
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-41 Score=324.30 Aligned_cols=331 Identities=20% Similarity=0.325 Sum_probs=269.4
Q ss_pred ccEEEEEEeCC--CCCCCCccccCCCccceecCCCcchhHHHHHHhHh-CCCceEEEEecCChHHHHHHHHHhh-hccCC
Q 009971 88 RSVLGIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSASLNRHLSRAY-ASNMG 163 (521)
Q Consensus 88 ~~~~aVILAaG--~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~-~gi~~I~Iv~~~~~~~i~~~l~~~~-~~~~~ 163 (521)
|+++||||.|| +||||+||+-+.||||+||+|. |||+|.|+.|.+ .|..+|+++.-|..+.+.+|+.... .+++
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~- 78 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKV- 78 (407)
T ss_pred CceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhccc-
Confidence 46899999999 7999999999999999999997 999999999998 6899999998888888888887632 2211
Q ss_pred CCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecC
Q 009971 164 GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 164 ~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
.+..+.. ..++||+++|++.++.+-....+.|+++++|..++++++++++.|+..+..+|++..++.
T Consensus 79 ------pvrYL~E-------~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs 145 (407)
T KOG1460|consen 79 ------PVRYLRE-------DNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVS 145 (407)
T ss_pred ------chhhhcc-------CCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEec
Confidence 1333321 125999999999997665545689999999999999999999999999999999999999
Q ss_pred cccCcceeEEEeCC-CCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHh---hh---
Q 009971 244 EKRATAFGLMKIDE-EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR---DK--- 316 (521)
Q Consensus 244 ~~~~~~~g~v~~d~-~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~---~~--- 316 (521)
.+++..||.++.|. .|+|++|.|||.... ++.+++|+|+|++++|..+-+ ..
T Consensus 146 ~e~asnfG~lV~dP~t~evlHYveKPsTfv---------------------Sd~InCGvYlF~~eif~~i~~v~~q~~~~ 204 (407)
T KOG1460|consen 146 REQASNFGCLVEDPSTGEVLHYVEKPSTFV---------------------SDIINCGVYLFTPEIFNAIAEVYRQRQDL 204 (407)
T ss_pred HhHhhccCeeeecCCcCceEEeecCcchhh---------------------hcccceeEEEecHHHHHHHHHHHHHHHhh
Confidence 88899999999884 699999999999875 469999999999999864321 10
Q ss_pred ------C----CCCCCh---hhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccC
Q 009971 317 ------F----PGANDF---GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYT 383 (521)
Q Consensus 317 ------~----~~~~d~---~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~ 383 (521)
+ +...|| ..|+|..|+. ..++|+|..+++|..|.|+.+-+.||+.++.+.. ..++. .+.+
T Consensus 205 ~~~~~~~~~l~~g~~d~irLeqDvlspLag-~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk-----~t~p~-~Lak 277 (407)
T KOG1460|consen 205 LEVEKDLPLLQPGPADFIRLEQDVLSPLAG-SKQLYAYETTDFWSQIKTAGSALYASRLYLSQYK-----RTHPA-RLAK 277 (407)
T ss_pred hhhhhcccccCCCccceEEeechhhhhhcC-CCceEEEecccHHHHhccccceeehhhhHHHHHh-----hcCch-hhcC
Confidence 1 122344 3799999998 7899999999999999999999999998887531 11111 1111
Q ss_pred CCCcCCCceeecccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceee
Q 009971 384 QPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGI 461 (521)
Q Consensus 384 ~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~I 461 (521)
.|++. ...++++.|.+.+.+.. ++|+ |+.||.+++||+|++|.+|+|.++ +.|
T Consensus 278 ----~pgt~--a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d-------------------~ei 332 (407)
T KOG1460|consen 278 ----GPGTQ--AEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDD-------------------AEI 332 (407)
T ss_pred ----CCCCC--ceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccC-------------------cEe
Confidence 12222 01157788888888887 8888 899999999999999999999997 689
Q ss_pred CCCCEEeeeEECCCCEECCCcEEeC
Q 009971 462 GKNSHIKRAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 462 g~~~~i~~~ii~~~~~Ig~~~~i~~ 486 (521)
.+|+++-+||||..+.||.++++..
T Consensus 333 ~enavVl~sIigw~s~iGrWaRVe~ 357 (407)
T KOG1460|consen 333 EENAVVLHSIIGWKSSIGRWARVEG 357 (407)
T ss_pred eccceEEeeeecccccccceeeecc
Confidence 9999999999999999999999965
No 22
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-41 Score=348.99 Aligned_cols=381 Identities=20% Similarity=0.355 Sum_probs=291.6
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
..++||+||.-+-+||.|+|...|++||||+ |.|||+|+|++|..+|+++|++.++-+..++++|+.++ .|.. .+.
T Consensus 23 ~rLqAIllaDsf~trF~Plt~~~p~~LLPla-NVpmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~s-ew~~--~~~ 98 (673)
T KOG1461|consen 23 HRLQAILLADSFETRFRPLTLEKPRVLLPLA-NVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKS-EWYL--PMS 98 (673)
T ss_pred cceEEEEEeccchhcccccccCCCceEeeec-CchHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhc-cccc--ccc
Confidence 4689999999999999999999999999998 67999999999999999999999999999999999983 2221 111
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHH-HhhhcCcceEEEEeCCeeccccHHHHHHHHHhc-----CCcEEEEEEe
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLW-LFEEHNVLEFLVLAGDHLYRMDYERFIQAHRET-----DADITVAALP 241 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~-~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~-----~aditi~~~~ 241 (521)
-.+..+-.. + ....+|++|.... .+ ..++|++++||++.+++|..++++|+.+ ++.|||++.+
T Consensus 99 -~~v~ti~s~----~---~~S~GDamR~id~k~l---itgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~ 167 (673)
T KOG1461|consen 99 -FIVVTICSG----E---SRSVGDAMRDIDEKQL---ITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKE 167 (673)
T ss_pred -ceEEEEcCC----C---cCcHHHHHHHHHhcce---eecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEec
Confidence 112222111 1 2456777776542 22 3589999999999999999999999653 3558888877
Q ss_pred cCcccCcceeEEEeCC-CCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC--
Q 009971 242 MDEKRATAFGLMKIDE-EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-- 318 (521)
Q Consensus 242 ~~~~~~~~~g~v~~d~-~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~-- 318 (521)
.......+--++.+|. +.+++.|.+.... .....++.++|...++ ...+.++.+++|-+|+++++. ++.++|+
T Consensus 168 ~st~~~~~~~~~avd~~T~~ll~yq~~~~~--~~~~~l~~sl~d~~~~-v~vr~DL~dc~IdIcS~~V~s-LF~dNFDyq 243 (673)
T KOG1461|consen 168 SSTRETTEQVVIAVDSRTSRLLHYQKCVRE--KHDIQLDLSLFDSNDE-VEVRNDLLDCQIDICSPEVLS-LFTDNFDYQ 243 (673)
T ss_pred cccccCCcceEEEEcCCcceEEeehhhccc--ccccccCHHHhcCCCc-EEEEccCCCceeeEecHhHHH-Hhhhcccce
Confidence 5311122333456665 4788888752211 1245566777766644 456789999999999999997 7777776
Q ss_pred CCCChhhcchHhhhhCCceEEEEEecc--eEEecCCHHHHHHHhhhcccCC----CCCccccccC-CCcccCCCCc-CCC
Q 009971 319 GANDFGSEVIPGATSIGMRVQAYLYDG--YWEDIGTIEAFYNANLGITKKP----IPDFRYFYDR-SAPIYTQPRY-LPP 390 (521)
Q Consensus 319 ~~~d~~~dil~~li~~~~~I~~~~~~g--~w~dIgt~edy~~An~~ll~~~----~~~~~~~~~~-~~~i~~~~~~-~~~ 390 (521)
.+.||...+|-.-+- |++|+++..+. |..++.+++.|...++.++.|| +|+.. +.+. .......-.+ .+.
T Consensus 244 ~r~DfV~GvL~~dil-g~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~-~~~~q~~~~~r~~IYk~~d 321 (673)
T KOG1461|consen 244 TRDDFVRGVLVDDIL-GYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDIN-FSGNQTFSLERRNIYKSPD 321 (673)
T ss_pred ehhhhhhhhhhhhhc-CCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhccccccccc-CCCCceeeecccccccCcc
Confidence 567888888876554 89999999975 8999999999999999999887 34444 4331 1111111111 222
Q ss_pred ceee-cccc-cceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEE
Q 009971 391 SKML-DADV-TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHI 467 (521)
Q Consensus 391 ~~i~-~~~i-~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i 467 (521)
+.+. .+.+ .+++||.|+.|+. +.|.||+||.+|+||.+|+|.++.||.+ |+||+||.|
T Consensus 322 v~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~-------------------v~Igdnc~I 382 (673)
T KOG1461|consen 322 VVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNN-------------------VTIGDNCRI 382 (673)
T ss_pred ceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecC-------------------cEECCCceE
Confidence 2222 2334 5789999999998 9999999999999999999999999998 799999999
Q ss_pred eeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 468 KRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 468 ~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
++|+|++++.|+++|.+.. |++++.+ |++|++-+++.+|+|
T Consensus 383 ~~aii~d~v~i~~~~~l~~------------g~vl~~~-VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 383 DHAIICDDVKIGEGAILKP------------GSVLGFG-VVVGRNFVLPKNSKV 423 (673)
T ss_pred eeeEeecCcEeCCCcccCC------------CcEEeee-eEeCCCccccccccc
Confidence 9999999999999999976 7999999 999999999998765
No 23
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.2e-39 Score=349.28 Aligned_cols=386 Identities=21% Similarity=0.263 Sum_probs=268.3
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
|+++|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|++++++++++..+++.+++...
T Consensus 1 m~~~avIlAaG~g~Rl~~---~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~~---------- 66 (458)
T PRK14354 1 MNRYAIILAAGKGTRMKS---KLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGDR---------- 66 (458)
T ss_pred CCceEEEEeCCCCcccCC---CCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcCC----------
Confidence 468999999999999984 799999999987 999999999999999999999999998888887542
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ec-cccHHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
+.++. + . +..|+++++++++.++++. .++|++++||. ++ +.++.++++.|++.+++.++++.+.+
T Consensus 67 ---~~~~~--~--~---~~~g~~~al~~a~~~l~~~-~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~-- 133 (458)
T PRK14354 67 ---SEFAL--Q--E---EQLGTGHAVMQAEEFLADK-EGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAE-- 133 (458)
T ss_pred ---cEEEE--c--C---CCCCHHHHHHHHHHHhccc-CCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcC--
Confidence 11221 1 1 1389999999999888531 36799999997 44 56799999999888888888877654
Q ss_pred cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCC---CCC
Q 009971 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---AND 322 (521)
Q Consensus 246 ~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~d 322 (521)
++..|+.+..|++++|..+.|||.....+ ...+++++|+|+|+++.|.+.+++.... ...
T Consensus 134 ~~~~~g~v~~d~~~~V~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~ 196 (458)
T PRK14354 134 NPTGYGRIIRNENGEVEKIVEQKDATEEE-----------------KQIKEINTGTYCFDNKALFEALKKISNDNAQGEY 196 (458)
T ss_pred CCCCceEEEEcCCCCEEEEEECCCCChHH-----------------hcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcE
Confidence 34568888888889999999987421110 0135899999999998665565432221 223
Q ss_pred hhhcchHhhhhCCceEEEEEecce--EEecCCHHHHHHHhhhcccCC------------CCCccccccCCCcccCCCCcC
Q 009971 323 FGSEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKKP------------IPDFRYFYDRSAPIYTQPRYL 388 (521)
Q Consensus 323 ~~~dil~~li~~~~~I~~~~~~g~--w~dIgt~edy~~An~~ll~~~------------~~~~~~~~~~~~~i~~~~~~~ 388 (521)
+.+++++.+++.+.++++|.++++ |+++++++||..|+..+..+. .|+.. ++.+...|+..+.+.
T Consensus 197 ~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~-~i~~~~~ig~~~~i~ 275 (458)
T PRK14354 197 YLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPEST-YIDADVEIGSDTVIE 275 (458)
T ss_pred eHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeE-EECCCcEECCCCEEe
Confidence 357889989887889999999875 568889999998876432111 01111 233333344444444
Q ss_pred CCceee-------------cccccceEECCCcEEceeEEeeeEECCCCEECCCCEEc-ceEEECCcccccccc-cccccc
Q 009971 389 PPSKML-------------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIE-DTLLMGADYYETDAD-RRFLAA 453 (521)
Q Consensus 389 ~~~~i~-------------~~~i~~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~-~s~i~~~~~~e~~~~-~~~~~~ 453 (521)
+++.+. ++.|.+++||++|.|+++.+.+++||.+|.||++|.|. ++++.++......+. .++.++
T Consensus 276 ~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~ 355 (458)
T PRK14354 276 PGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIG 355 (458)
T ss_pred CCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEEC
Confidence 333322 33445566777777766666677888888888877777 344433322221111 344555
Q ss_pred CCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCC-ceeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 454 KGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQE-AARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 454 ~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~-~~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
+++ .|++.+.+.+++|+++|.||.++.+.+.++..+ ..+++++++|+.+. ++||++++||+|++|
T Consensus 356 ~~~---~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v 426 (458)
T PRK14354 356 EGT---KVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTI 426 (458)
T ss_pred CCC---EecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCEECCCCEE
Confidence 555 566666677788889999999988877554433 23455555555442 789999999999875
No 24
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.6e-39 Score=344.58 Aligned_cols=376 Identities=20% Similarity=0.248 Sum_probs=253.4
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
|+|||||||.|+||++ .+||+|+|++|+ |||+|+|++|.+.+ ++|+|++++..+.+.+|+...
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~~------------ 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPEW------------ 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhcccc------------
Confidence 6899999999999984 799999999987 99999999999974 899999999888888887641
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe--eccccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (521)
+.++. + . ..+|++++++.++.+++. .++|++++||+ +.+.++.++++.|+++++++|+++.+.+ ++
T Consensus 64 -~~~~~--~--~---~~~g~~~ai~~a~~~l~~--~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~--~~ 131 (448)
T PRK14357 64 -VKIFL--Q--E---EQLGTAHAVMCARDFIEP--GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLE--DP 131 (448)
T ss_pred -cEEEe--c--C---CCCChHHHHHHHHHhcCc--CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC--CC
Confidence 22221 1 1 137999999999988853 47899999998 5567899999999988999999888765 35
Q ss_pred cceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCC---CCChh
Q 009971 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---ANDFG 324 (521)
Q Consensus 248 ~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~d~~ 324 (521)
..|+.+..| ++++ .+.||+..+... ...+++++|+|+|++++|.+++++.... ...+.
T Consensus 132 ~~~g~v~~d-~g~v-~~~e~~~~~~~~-----------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~ 192 (448)
T PRK14357 132 TGYGRIIRD-GGKY-RIVEDKDAPEEE-----------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYL 192 (448)
T ss_pred CCcEEEEEc-CCeE-EEEECCCCChHH-----------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEH
Confidence 679998887 6788 777766432110 0125899999999999987766542221 11234
Q ss_pred hcchHhhhhCCceEEEEEecce--EEecCCHHHHHHHhhhcccC--------C----CCCccccccCCCcccCCCCcCCC
Q 009971 325 SEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKK--------P----IPDFRYFYDRSAPIYTQPRYLPP 390 (521)
Q Consensus 325 ~dil~~li~~~~~I~~~~~~g~--w~dIgt~edy~~An~~ll~~--------~----~~~~~~~~~~~~~i~~~~~~~~~ 390 (521)
.|+++.+ .++++|.+.++ |.+++++++|..+...+... . .|... ++++.+.|...+.+.|+
T Consensus 193 ~d~i~~~----~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~Ig~~~~i~~~ 267 (448)
T PRK14357 193 TDAVNFA----EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTT-YIHYDVEIGMDTIIYPM 267 (448)
T ss_pred HHHHHhh----hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcE-EEccceEECCCcEEcCC
Confidence 5777666 24888888888 67788999988776544211 0 01111 34445555555555554
Q ss_pred ceee-------------cccccceEECCCcEEceeEEeeeEECCCCEECCCCEEcc-eEEECCcccccccc-ccccccCC
Q 009971 391 SKML-------------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIED-TLLMGADYYETDAD-RRFLAAKG 455 (521)
Q Consensus 391 ~~i~-------------~~~i~~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~-s~i~~~~~~e~~~~-~~~~~~~~ 455 (521)
+.+. ++.+.+++||++|.|..+.+.+++||.++.||++++|.. +++.++......+. .++.|+++
T Consensus 268 ~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~ 347 (448)
T PRK14357 268 TFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGEN 347 (448)
T ss_pred cEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcCC
Confidence 4432 233344555555555444555666666666666666643 33333322111111 23344444
Q ss_pred CcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCC-ceeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 456 SVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQE-AARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 456 ~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~-~~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
+ .+++.+.+.+++||++|.||+++.+.+.+...+ .++++++++|+.+. ++||+++.|++|++|
T Consensus 348 ~---~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v 416 (448)
T PRK14357 348 T---KAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVI 416 (448)
T ss_pred c---CccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEE
Confidence 4 445555566788888888888888876554333 24566666666552 788999999999875
No 25
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.8e-38 Score=339.34 Aligned_cols=381 Identities=18% Similarity=0.242 Sum_probs=266.2
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
|.+||||||.|+||++ .+||+|+|++|+ |||+|+|++|.++|+++++|++++..+++.+++.+..
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~----------- 66 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHLP----------- 66 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcccC-----------
Confidence 6899999999999985 789999999987 9999999999999999999999998888888886511
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe--eccccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (521)
.+.++. +. +..|++++++.++.++++. .+++++++||. +.+.++.++++.|++.+++++++..+.+ ++
T Consensus 67 ~i~~v~--~~-----~~~G~~~sv~~~~~~l~~~-~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~--~~ 136 (450)
T PRK14360 67 GLEFVE--QQ-----PQLGTGHAVQQLLPVLKGF-EGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLP--NP 136 (450)
T ss_pred CeEEEE--eC-----CcCCcHHHHHHHHHHhhcc-CCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecC--CC
Confidence 133432 11 1378999999998887632 35799999999 4457799999999988888888776654 35
Q ss_pred cceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCC---CCChh
Q 009971 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---ANDFG 324 (521)
Q Consensus 248 ~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~---~~d~~ 324 (521)
..|+.+..|++|+|.++.|||.....+ ..++++++|+|+|+++.|.+++++..+. ...+.
T Consensus 137 ~~~g~~~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~ 199 (450)
T PRK14360 137 KGYGRVFCDGNNLVEQIVEDRDCTPAQ-----------------RQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYL 199 (450)
T ss_pred CCccEEEECCCCCEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeH
Confidence 569999898889999999998642111 1135899999999999888777643322 22345
Q ss_pred hcchHhhhhCCceEEEEEecce--EEecCCHHHHHHHhhhcccCC-----CCCccccccC-------------------C
Q 009971 325 SEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITKKP-----IPDFRYFYDR-------------------S 378 (521)
Q Consensus 325 ~dil~~li~~~~~I~~~~~~g~--w~dIgt~edy~~An~~ll~~~-----~~~~~~~~~~-------------------~ 378 (521)
++.++.+.+ +..+.+.++ |..+++++++..+...+.... .+... ++++ .
T Consensus 200 td~i~~~~~----~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~-~i~~~~~~i~~~~~ig~~~~i~~~ 274 (450)
T PRK14360 200 TDTVSLLDP----VMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVT-FIDPASCTISETVELGPDVIIEPQ 274 (450)
T ss_pred HHHHHHHhh----ceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcE-EecCCeEEEeCCEEECCCCEECCC
Confidence 677776643 556666665 567999999988766542211 00001 1222 1
Q ss_pred CcccCCCCcCCCceee-cccccceEECCCcEEceeEEeeeEECCCCEECCCCEEc-ceEEECCcccccccc-ccccccCC
Q 009971 379 APIYTQPRYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIE-DTLLMGADYYETDAD-RRFLAAKG 455 (521)
Q Consensus 379 ~~i~~~~~~~~~~~i~-~~~i~~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~-~s~i~~~~~~e~~~~-~~~~~~~~ 455 (521)
+.|...+.+++++.+. ++.|.+++|+++|.|+.+.+.+++||++|.|+++|+|. ++++.++......+. .++.++++
T Consensus 275 ~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~ 354 (450)
T PRK14360 275 THLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEG 354 (450)
T ss_pred CEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCC
Confidence 2222233333444442 44456667777777755666778888888888888887 455554433322222 34555555
Q ss_pred CcceeeCCCCEEeeeEECCCCEECCCcEEeCCCc-------cCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 456 SVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDS-------VQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 456 ~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~-------~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+ .|++++++.+++|+++|.||.++++.+.++ +++++++|.++.|..+ ++||++++|++|++|
T Consensus 355 ~---~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~-~~ig~~~~v~~~~~v 423 (450)
T PRK14360 355 S---KVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAP-ITLGEDVTVAAGSTI 423 (450)
T ss_pred c---EeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCC-cEECCCCEECCCCEE
Confidence 5 566666777789999999999999876444 4444455555555555 889999999998875
No 26
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-38 Score=312.53 Aligned_cols=360 Identities=22% Similarity=0.343 Sum_probs=259.9
Q ss_pred CCccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCC-hHHHHHHHHHhhhccCCC
Q 009971 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN-SASLNRHLSRAYASNMGG 164 (521)
Q Consensus 86 ~~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~-~~~i~~~l~~~~~~~~~~ 164 (521)
.|.+++|||+|||.||||..++...|||||||+ ++|||+|+|++|.+.||++|+|++... ...|+..|...+...+
T Consensus 6 ~~~efqavV~a~~ggt~~p~~~~~~pKaLLPIg-n~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~~-- 82 (433)
T KOG1462|consen 6 PMSEFQAVVLAGGGGTRMPEVTSRLPKALLPIG-NKPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLKK-- 82 (433)
T ss_pred chHHhhhheeecCCceechhhhhhcchhhcccC-CcceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCcccc--
Confidence 356899999999999999999999999999996 569999999999999999999999864 3567777766554322
Q ss_pred CcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCc
Q 009971 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDE 244 (521)
Q Consensus 165 ~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~ 244 (521)
...++++-...++ ..||+++|+.....++. +|||++.||.+++.++..+++.++..++...+++.....
T Consensus 83 --~~~~v~ip~~~~~------d~gtadsLr~Iy~kikS---~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s 151 (433)
T KOG1462|consen 83 --RPDYVEIPTDDNS------DFGTADSLRYIYSKIKS---EDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALS 151 (433)
T ss_pred --cccEEEeeccccc------ccCCHHHHhhhhhhhcc---CCEEEEecccccCCCcHHHHHHHhccChhHhHHhccccc
Confidence 2234554332221 28999999999888873 799999999999999999999999888775555443211
Q ss_pred ---------ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhh
Q 009971 245 ---------KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD 315 (521)
Q Consensus 245 ---------~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~ 315 (521)
+....+.++.++++..-+.|.... ......+.+..++|+.+|... ..+.+.++++|+|+.++++ ++.+
T Consensus 152 ~~~~pgqk~k~k~~~d~igi~e~t~rl~y~~~~-~d~~~~l~i~~slL~~~prlt-l~t~L~dahiY~~k~~v~d-~l~~ 228 (433)
T KOG1462|consen 152 EVPIPGQKGKKKQARDVIGINEDTERLAYSSDS-ADEEEPLVIRKSLLWNHPRLT-LTTKLVDAHIYVFKHWVID-LLSE 228 (433)
T ss_pred cccccCcccccccccceeeeccccceeEEeecC-CcCCCceehhhhhhhcCCceE-EeccccceeeeeeHHHHHH-HHhc
Confidence 112345566676664334443222 122235677788888777644 4567999999999999986 6653
Q ss_pred hCCCCCChhhcchHhhhhCC--------------------------------ceEEEEEec--ceEEecCCHHHHHHHhh
Q 009971 316 KFPGANDFGSEVIPGATSIG--------------------------------MRVQAYLYD--GYWEDIGTIEAFYNANL 361 (521)
Q Consensus 316 ~~~~~~d~~~dil~~li~~~--------------------------------~~I~~~~~~--g~w~dIgt~edy~~An~ 361 (521)
. +...+|-.+++|.+++.+ .++++|... ..+.+++|+-.|+++|+
T Consensus 229 ~-~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~ 307 (433)
T KOG1462|consen 229 K-ESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINR 307 (433)
T ss_pred C-CcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhH
Confidence 2 222334455555554432 345555553 45889999999999995
Q ss_pred --hcccCCCCCccccccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEEC
Q 009971 362 --GITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMG 438 (521)
Q Consensus 362 --~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~ 438 (521)
.+..-. + +.....+. .+.....-.+++|+++|.|++ +.|..|+||.+|.||+.|+|.+|++|+
T Consensus 308 ~k~~~~l~-~--------e~~~~k~~-----~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~ 373 (433)
T KOG1462|consen 308 DKKLKKLC-S--------EAKFVKNY-----VKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMD 373 (433)
T ss_pred HHHHHHhc-c--------ccccccch-----hhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeec
Confidence 333211 1 11111110 000111124788999999997 999999999999999999999999999
Q ss_pred CccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEc
Q 009971 439 ADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIK 503 (521)
Q Consensus 439 ~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~ 503 (521)
+ ++||+++.|++||||.++.||+++.+.| |.||.++++.
T Consensus 374 n-------------------V~vg~G~~IensIIg~gA~Ig~gs~L~n-------C~Ig~~yvVe 412 (433)
T KOG1462|consen 374 N-------------------VVVGDGVNIENSIIGMGAQIGSGSKLKN-------CIIGPGYVVE 412 (433)
T ss_pred C-------------------cEecCCcceecceecccceecCCCeeee-------eEecCCcEEc
Confidence 8 7999999999999999999999999997 4455555554
No 27
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.8e-38 Score=299.61 Aligned_cols=280 Identities=23% Similarity=0.334 Sum_probs=223.9
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCC-hHHHHHHHHHhhhccCCCCcCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN-SASLNRHLSRAYASNMGGYKNE 168 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~-~~~i~~~l~~~~~~~~~~~~~~ 168 (521)
|+|||||||.||||+|+|...||+|+||.+| |||+|+|+.|..+||++|.|+++++ ...+++++.++..|+
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGdgs~~g------- 72 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGDGSDFG------- 72 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcCccccC-------
Confidence 7999999999999999999999999999986 9999999999999999999999984 578888888865553
Q ss_pred CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 009971 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (521)
Q Consensus 169 ~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~ 248 (521)
+.+-...|. + +.|-|+|+..+.+++. +++|+++.||.++..++.++++.+.++..+.++++.++++ |+
T Consensus 73 --v~itY~~Q~--~---p~GlA~Av~~a~~fv~---~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~d--P~ 140 (286)
T COG1209 73 --VDITYAVQP--E---PDGLAHAVLIAEDFVG---DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDD--PS 140 (286)
T ss_pred --cceEEEecC--C---CCcHHHHHHHHHhhcC---CCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCC--cc
Confidence 233344452 2 3899999999998886 3799999999977669999999999988899999999874 88
Q ss_pred ceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC-CCCChh-hc
Q 009971 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-GANDFG-SE 326 (521)
Q Consensus 249 ~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~-~~~d~~-~d 326 (521)
.||++.+|++++++.+.|||+.+. ++++-+|+|+|++++|+ .++...| .+.+++ +|
T Consensus 141 rfGV~e~d~~~~v~~l~EKP~~P~---------------------SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGElEITd 198 (286)
T COG1209 141 RYGVVEFDEDGKVIGLEEKPKEPK---------------------SNLAVTGLYFYDPSVFE-AIKQIKPSARGELEITD 198 (286)
T ss_pred cceEEEEcCCCcEEEeEECCCCCC---------------------CceeEEEEEEeChHHHH-HHHcCCCCCCCceEehH
Confidence 999999999999999999999875 57999999999999997 5554444 445554 89
Q ss_pred chHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCceeecccccceEECCC
Q 009971 327 VIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEG 406 (521)
Q Consensus 327 il~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~ 406 (521)
+++.++++|..+......|.|.|.||+++|++|+..+...... .......|.+++ -+++|...
T Consensus 199 ~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~~~~~------------~G~~~~~~~~~~-----~~~~i~~~ 261 (286)
T COG1209 199 AIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRTVSKR------------QGFKIACPEEIA-----WNGWIDGP 261 (286)
T ss_pred HHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHHHHhh------------cCCEEeChhHEE-----EecEEech
Confidence 9999999999999999999999999999999999987652210 011112222222 24455555
Q ss_pred cEEce-eEEeeeEECCCCEECCC
Q 009971 407 CVIKN-CKIHHSVVGLRSCISEG 428 (521)
Q Consensus 407 ~~I~~-~~I~~s~ig~~~~Ig~~ 428 (521)
++|+. |.+.++.+|+...++.+
T Consensus 262 ~~~~~~~~l~~~~~G~y~~~~~~ 284 (286)
T COG1209 262 GLIGLASQLEKSGYGQYLLELLR 284 (286)
T ss_pred HhhccccchhhcCcchhhhhhhc
Confidence 55554 55556677766666554
No 28
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=1.6e-37 Score=305.56 Aligned_cols=241 Identities=34% Similarity=0.618 Sum_probs=196.3
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceE-EEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKI-YVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 91 ~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I-~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
||||||||.||||+|||..+||||+|++|++|||+|+|++|.++|++++ +|+++++.+.+.+|+.+.+.+++
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~~~~~------- 73 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGYKFGV------- 73 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSGGGTE-------
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccccccc-------
Confidence 7999999999999999999999999999877999999999999999995 55555778899999998654431
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcC-cceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHN-VLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~-~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~ 248 (521)
.++++. |. . ..||+++|++++..++... .++||+++||++++.++.++++.|+++++++++++...+.+++.
T Consensus 74 ~i~~i~--~~--~---~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 146 (248)
T PF00483_consen 74 KIEYIV--QP--E---PLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVEDPS 146 (248)
T ss_dssp EEEEEE--ES--S---SSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSGGG
T ss_pred cceeee--cc--c---ccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhccccccccccccccccccc
Confidence 133332 21 1 2799999999999887532 24599999999999999999999999998543433333344578
Q ss_pred ceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHh--hhCCCCCChhhc
Q 009971 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR--DKFPGANDFGSE 326 (521)
Q Consensus 249 ~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~--~~~~~~~d~~~d 326 (521)
.||++.+|++|+|++|.|||..+.. +.++++|+|+|++++|..+++ +......++..+
T Consensus 147 ~~g~v~~d~~~~V~~~~EKP~~~~~--------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d 206 (248)
T PF00483_consen 147 RYGVVEVDEDGRVIRIVEKPDNPNA--------------------SNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTD 206 (248)
T ss_dssp GSEEEEEETTSEEEEEEESCSSHSH--------------------SSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHH
T ss_pred cceeeeeccceeEEEEeccCccccc--------------------ceeccCceEEEcchHHHHHhhhhhccchhhhHHHH
Confidence 9999999988999999999986542 359999999999999986644 233345667799
Q ss_pred chHhhhhCCceEEEEEecc--eEEecCCHHHHHHHhhhccc
Q 009971 327 VIPGATSIGMRVQAYLYDG--YWEDIGTIEAFYNANLGITK 365 (521)
Q Consensus 327 il~~li~~~~~I~~~~~~g--~w~dIgt~edy~~An~~ll~ 365 (521)
+++.+++++..+.++.+++ +|.|||||++|++||+.+++
T Consensus 207 ~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 207 AIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 9999999888899999998 79999999999999998864
No 29
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=2.4e-36 Score=303.85 Aligned_cols=247 Identities=21% Similarity=0.274 Sum_probs=189.6
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhcc--CCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--MGG 164 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~--~~~ 164 (521)
|.+|+|||||||.||||+|+|+.+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+...+.+. +..
T Consensus 1 ~~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 4579999999999999999999999999999986 9999999999999999999999999999999997643210 000
Q ss_pred --------CcC---CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeecc--------ccHHHHH
Q 009971 165 --------YKN---EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR--------MDYERFI 225 (521)
Q Consensus 165 --------~~~---~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~--------~dl~~ll 225 (521)
... ...+.+....| .+++||++++++++.++++ ++|++++||++++ .++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~~~q-----~~~lGtg~Av~~a~~~l~~---~~flvv~gD~l~~~~~~~~~~~~l~~li 151 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPGVTIMNVRQ-----AQPLGLGHSILCARPVVGD---NPFVVVLPDIIIDDATADPLRYNLAAMI 151 (297)
T ss_pred hcchhhhhhhhhcCCCCceEEEeeC-----CCcCchHHHHHHHHHHhCC---CCEEEEECCeeccccccccchhHHHHHH
Confidence 000 00112222222 2469999999999998863 6899999999886 5899999
Q ss_pred HHHHhcCCcEEEEEEecCcccCcceeEEEeC----CCCC---eEEeeeCCChhhhhhcccccccccCCchhhccCCceee
Q 009971 226 QAHRETDADITVAALPMDEKRATAFGLMKID----EEGR---IIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIAS 298 (521)
Q Consensus 226 ~~h~~~~aditi~~~~~~~~~~~~~g~v~~d----~~gr---V~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 298 (521)
+.|.++++.++++ .+.. +++..||++.+| ++|+ |.++.|||..+.. ..+++++
T Consensus 152 ~~~~~~~~~~~~~-~~~~-~~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~------------------~~s~~~~ 211 (297)
T TIGR01105 152 ARFNETGRSQVLA-KRMP-GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT------------------LDSDLMA 211 (297)
T ss_pred HHHHHhCCcEEEE-EEcC-CCCccceEEEecccccCCCCeeeEeEEEECCCCccc------------------CCcCEEE
Confidence 9998777766444 3333 237799999984 4564 5899999864321 0146999
Q ss_pred EEEEEEeHHHHHHHHhhhCCC-CC-ChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcc
Q 009971 299 MGIYVISKDVMLNLLRDKFPG-AN-DFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 299 ~GIyifs~~vl~~ll~~~~~~-~~-d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll 364 (521)
+|+|+|++++|. .++...+. .+ ...+|+++.+++ +.+++++.++|+|+|||+|++|.+||.++.
T Consensus 212 ~GiYi~~~~i~~-~l~~~~~~~~ge~~ltd~i~~l~~-~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 212 VGRYVLSADIWA-ELERTEPGAWGRIQLTDAIAELAK-KQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred EEEEEECHHHHH-HHhcCCCCCCCeeeHHHHHHHHHh-cCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 999999999987 44432221 22 235799999998 568999999999999999999999998874
No 30
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=1.5e-35 Score=293.77 Aligned_cols=235 Identities=21% Similarity=0.376 Sum_probs=191.8
Q ss_pred EEEEeCC--CCCCCCccccCCCccceecCCCcchhHHHHHHhHh-CCCceEEEEecCChHHHHHHHHHhhhccCCCCcCC
Q 009971 92 GIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (521)
Q Consensus 92 aVILAaG--~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~-~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (521)
||||||| .||||+|||..+||||+||+|+ |||+|+|++|.+ +|+++|+|++++..+++.+|+.+... .. +
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~-~~----~- 73 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQ-EF----N- 73 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhccc-cc----C-
Confidence 6999999 8999999999999999999987 999999999999 69999999999999999999986311 00 1
Q ss_pred CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 009971 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (521)
Q Consensus 169 ~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~ 248 (521)
..+.++ .+ .+ ..||++++..++.+++....++|||++||++++.|+.++++.|+++++++|+++.+.+.+++.
T Consensus 74 ~~i~~~--~~--~~---~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~ 146 (257)
T cd06428 74 VPIRYL--QE--YK---PLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQAS 146 (257)
T ss_pred ceEEEe--cC--Cc---cCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccc
Confidence 112222 22 11 389999999999888543347899999999999999999999999999999998876544567
Q ss_pred ceeEEEeC-CCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC---------
Q 009971 249 AFGLMKID-EEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP--------- 318 (521)
Q Consensus 249 ~~g~v~~d-~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~--------- 318 (521)
.||++.+| ++|+|..+.|||.... ++++++|+|+|++++|..+.+ ..+
T Consensus 147 ~yg~v~~d~~~g~v~~~~Ekp~~~~---------------------~~~~~~Giyi~~~~~~~~i~~-~~~~~~~e~~~~ 204 (257)
T cd06428 147 NYGCIVEDPSTGEVLHYVEKPETFV---------------------SDLINCGVYLFSPEIFDTIKK-AFQSRQQEAQLG 204 (257)
T ss_pred cccEEEEeCCCCeEEEEEeCCCCcc---------------------cceEEEEEEEECHHHHHHHhh-hccccccccccc
Confidence 89999988 6789999999986432 358999999999999864432 211
Q ss_pred ---------CCCChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhc
Q 009971 319 ---------GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 319 ---------~~~d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~l 363 (521)
...++..++++.+++ ..++++|.++|+|.||+|+++|++||+.+
T Consensus 205 ~~~~~~~~~~~~~~~~d~~~~l~~-~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 205 DDNNREGRAEVIRLEQDVLTPLAG-SGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred cccccccccceeeehhhhhhHHhc-cCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 112345799999998 55899999999999999999999999853
No 31
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=4.8e-35 Score=295.01 Aligned_cols=246 Identities=22% Similarity=0.300 Sum_probs=191.3
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhcc-----
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN----- 161 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~----- 161 (521)
|.+|+|||||||.||||+|+|+.+||||+||+|+ |||+|++++|.++||++|+|++++..+++.+|+...+.+.
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 4689999999999999999999999999999987 9999999999999999999999999999999997533210
Q ss_pred ------C---CCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeecc--------ccHHHH
Q 009971 162 ------M---GGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR--------MDYERF 224 (521)
Q Consensus 162 ------~---~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~--------~dl~~l 224 (521)
+ ......+ +.+....| .+ ++||++++++++.++. .++|++++||++++ .|+.++
T Consensus 80 ~~k~~~l~~~~~~~~~~-~~i~~~~q--~~---~lGtg~al~~a~~~l~---~~~fvvi~gD~l~~~~~~~~~~~dl~~l 150 (297)
T PRK10122 80 RVKRQLLAEVQSICPPG-VTIMNVRQ--GQ---PLGLGHSILCARPAIG---DNPFVVVLPDVVIDDASADPLRYNLAAM 150 (297)
T ss_pred cchhhhHHhhhhccCCC-ceEEEeec--CC---cCchHHHHHHHHHHcC---CCCEEEEECCeeccCccccccchhHHHH
Confidence 0 0000001 22222233 12 3899999999999885 36899999999885 589999
Q ss_pred HHHHHhcCCcEEEEEEecCcccCcceeEEEeC----CCC---CeEEeeeCCChhhhhhcccccccccCCchhhccCCcee
Q 009971 225 IQAHRETDADITVAALPMDEKRATAFGLMKID----EEG---RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIA 297 (521)
Q Consensus 225 l~~h~~~~aditi~~~~~~~~~~~~~g~v~~d----~~g---rV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 297 (521)
++.|.+++++++++ ..... ++..||++.+| ++| +|+.+.|||..+.. ..++++
T Consensus 151 i~~h~~~~~~~~~~-~~~~~-~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~------------------~~s~~~ 210 (297)
T PRK10122 151 IARFNETGRSQVLA-KRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT------------------LDSDLM 210 (297)
T ss_pred HHHHHHhCCcEEEE-EECCC-CCCCceEEEecCcccCCCCeeeEEEEEECCCCccc------------------CCccEE
Confidence 99998888775444 33332 56789999986 355 78999999864321 113589
Q ss_pred eEEEEEEeHHHHHHHHhhhCCC--CCChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcc
Q 009971 298 SMGIYVISKDVMLNLLRDKFPG--ANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 298 ~~GIyifs~~vl~~ll~~~~~~--~~d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll 364 (521)
++|+|+|++++|..+.+ ..+. ...+.+++++.+++ +.++++|.++|+|+|||+|++|.+|+.++.
T Consensus 211 ~~GiYi~~~~i~~~l~~-~~~~~~~e~~ltd~i~~l~~-~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~ 277 (297)
T PRK10122 211 AVGRYVLSADIWPELER-TEPGAWGRIQLTDAIAELAK-KQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred EEEEEEECHHHHHHHHh-CCCCCCCeeeHHHHHHHHHh-CCCEEEEEeCCEEEcCCCHHHHHHHHHHHH
Confidence 99999999999885543 2222 22345799999998 578999999999999999999999999983
No 32
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=7.4e-35 Score=284.46 Aligned_cols=232 Identities=23% Similarity=0.353 Sum_probs=192.0
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
|++||||||.|+||+|+|..+||||+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+. ... .
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~-~~~-------~ 71 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEY-EKK-------L 71 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhcc-ccc-------C
Confidence 6899999999999999999999999999987 999999999999999999999999999999999752 100 1
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCcc
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATA 249 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~ 249 (521)
.++++...+ ....|++++++.++..++.. .++||+++||++++.++.++++.|+++++++++++.+.+. +..
T Consensus 72 ~~~i~~~~~-----~~~~G~~~al~~a~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 143 (233)
T cd06425 72 GIKITFSIE-----TEPLGTAGPLALARDLLGDD-DEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED--PSK 143 (233)
T ss_pred CeEEEeccC-----CCCCccHHHHHHHHHHhccC-CCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC--ccc
Confidence 133332211 11389999999999888632 3679999999999999999999999999999999887653 568
Q ss_pred eeEEEeCC-CCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhcch
Q 009971 250 FGLMKIDE-EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI 328 (521)
Q Consensus 250 ~g~v~~d~-~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~dil 328 (521)
||++.+|+ +++|+++.|||..+. ++++++|+|+|++++|..+ .. ...+...+++
T Consensus 144 ~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~l-~~---~~~~~~~~~~ 198 (233)
T cd06425 144 YGVVVHDENTGRIERFVEKPKVFV---------------------GNKINAGIYILNPSVLDRI-PL---RPTSIEKEIF 198 (233)
T ss_pred cCeEEEcCCCCEEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHHhc-cc---CcccchhhhH
Confidence 99999987 789999999986432 3589999999999999644 32 2233457899
Q ss_pred HhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcc
Q 009971 329 PGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 329 ~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll 364 (521)
+.+++ ..++.+|+++|+|.||+|+++|++|++.++
T Consensus 199 ~~l~~-~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 199 PKMAS-EGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred HHHHh-cCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 99988 568999999999999999999999998654
No 33
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=2.3e-34 Score=288.78 Aligned_cols=236 Identities=23% Similarity=0.372 Sum_probs=189.0
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecC-ChHHHHHHHHHhhhccCCCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF-NSASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~-~~~~i~~~l~~~~~~~~~~~ 165 (521)
|+.|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|..+|+++|+|++.+ ..+.+.+|+.++..|++.
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~g~~~g~~-- 77 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLN-- 77 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcCccccCce--
Confidence 4679999999999999999999999999999987 999999999999999999987754 457889999875444321
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCee-ccccHHHHHHHHHhcCCcEEEEEEecCc
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHL-YRMDYERFIQAHRETDADITVAALPMDE 244 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l-~~~dl~~ll~~h~~~~aditi~~~~~~~ 244 (521)
+.+. .| .. +.||++++..+.+++.+ ++++++.||.+ ++.|+.++++.|.++++++|+++.+++
T Consensus 78 -----i~y~--~q--~~---~~Gta~Al~~a~~~i~~---~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~- 141 (292)
T PRK15480 78 -----LQYK--VQ--PS---PDGLAQAFIIGEEFIGG---DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVN- 141 (292)
T ss_pred -----eEEE--EC--CC---CCCHHHHHHHHHHHhCC---CCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcC-
Confidence 2221 22 11 38999999999988853 46888899974 578999999999888888998887764
Q ss_pred ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCC-CCCh
Q 009971 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDF 323 (521)
Q Consensus 245 ~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~-~~d~ 323 (521)
++..||++.+|++|+|+.|.|||..+. ++++++|+|+|+++++. .++...+. +.++
T Consensus 142 -~p~~yGvv~~d~~g~v~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~-~~~~~~~~~~ge~ 198 (292)
T PRK15480 142 -DPERYGVVEFDQNGTAISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVE-MAKNLKPSARGEL 198 (292)
T ss_pred -CcccCcEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEChHHHH-HHhhcCCCCCCee
Confidence 467899999998899999999986442 45899999999999886 44432232 2333
Q ss_pred -hhcchHhhhhCCceEEEEEecc-eEEecCCHHHHHHHhhhcc
Q 009971 324 -GSEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 324 -~~dil~~li~~~~~I~~~~~~g-~w~dIgt~edy~~An~~ll 364 (521)
.+++++.+++.+.....+..++ .|+|+||+++|.+|+..+.
T Consensus 199 ~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 199 EITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred EhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 4799999988665445566678 4999999999999998775
No 34
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=1.2e-33 Score=277.12 Aligned_cols=231 Identities=25% Similarity=0.367 Sum_probs=184.6
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCC-hHHHHHHHHHhhhccCCCCcCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN-SASLNRHLSRAYASNMGGYKNE 168 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~-~~~i~~~l~~~~~~~~~~~~~~ 168 (521)
|+|||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|++++++. .+++.+|+.....|+
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~~~~~~------- 72 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGDGSDLG------- 72 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhcccccC-------
Confidence 6899999999999999999999999999875 9999999999999999999998755 478899997644332
Q ss_pred CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-eccccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 009971 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (521)
Q Consensus 169 ~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (521)
+++....+. ...||+++++.++.+++ .++|++++||+ +++.++.++++.|.++++++++++.+.++ +
T Consensus 73 --~~i~~~~~~-----~~~G~~~al~~a~~~~~---~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 140 (240)
T cd02538 73 --IRITYAVQP-----KPGGLAQAFIIGEEFIG---DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVND--P 140 (240)
T ss_pred --ceEEEeeCC-----CCCCHHHHHHHHHHhcC---CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCc--h
Confidence 222222221 13899999999998885 36899999998 45678999999998888899988877653 5
Q ss_pred cceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC-CCCC-hhh
Q 009971 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-GAND-FGS 325 (521)
Q Consensus 248 ~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~-~~~d-~~~ 325 (521)
..||.+.+|++|+|+.+.|||.... ..++++|+|+|++++|+ ++++..+ ...+ ...
T Consensus 141 ~~~g~v~~d~~g~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~~~l~ 198 (240)
T cd02538 141 ERYGVVEFDENGRVLSIEEKPKKPK---------------------SNYAVTGLYFYDNDVFE-IAKQLKPSARGELEIT 198 (240)
T ss_pred hcCceEEecCCCcEEEEEECCCCCC---------------------CCeEEEEEEEECHHHHH-HHHhcCCCCCCeEEhH
Confidence 6799999998899999999986432 24889999999999885 5553222 1222 346
Q ss_pred cchHhhhhCCceEEEEEec--ceEEecCCHHHHHHHhhhc
Q 009971 326 EVIPGATSIGMRVQAYLYD--GYWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 326 dil~~li~~~~~I~~~~~~--g~w~dIgt~edy~~An~~l 363 (521)
++++.+++.+ ++.++.++ ++|+||||+++|++||+.+
T Consensus 199 d~~~~l~~~g-~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 199 DVNNEYLEKG-KLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred HHHHHHHHhC-CeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 8999998844 56666665 9999999999999999865
No 35
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=1.7e-33 Score=280.49 Aligned_cols=244 Identities=23% Similarity=0.314 Sum_probs=188.7
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccC-----CC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNM-----GG 164 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~-----~~ 164 (521)
|+|||||||.|+||+|+|..+||||+|++|+ |||+|+|+++.++|+++|+|+++++.+++.+|+.+.+.+.. +.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 6899999999999999999999999999987 99999999999999999999999999999999976443210 00
Q ss_pred C--------cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccc---cHHHHHHHHHhcCC
Q 009971 165 Y--------KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRM---DYERFIQAHRETDA 233 (521)
Q Consensus 165 ~--------~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~---dl~~ll~~h~~~~a 233 (521)
. ...+ +++....+ .+..||+++++.++.++++ ++|++++||+++.. ++.++++.|++.++
T Consensus 80 ~~~~~~~~~~~~~-~~i~~~~~-----~~~~Gt~~al~~~~~~i~~---~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~ 150 (267)
T cd02541 80 TDLLEEVRIISDL-ANIHYVRQ-----KEPLGLGHAVLCAKPFIGD---EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGA 150 (267)
T ss_pred HHHhhhhhcccCC-ceEEEEEc-----CCCCChHHHHHHHHHHhCC---CceEEEECCeEEeCCchHHHHHHHHHHHhCC
Confidence 0 0001 12211111 2348999999999988863 68999999997653 49999999988777
Q ss_pred cEEEEEEecCcccCcceeEEEeCC----CCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHH
Q 009971 234 DITVAALPMDEKRATAFGLMKIDE----EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM 309 (521)
Q Consensus 234 diti~~~~~~~~~~~~~g~v~~d~----~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl 309 (521)
++ +++.+.+.+++..||.+.+|+ .++|..+.|||..... .++++++|+|+|++++|
T Consensus 151 ~~-~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~~~~~ 210 (267)
T cd02541 151 SV-IAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRYVLTPDIF 210 (267)
T ss_pred CE-EEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEEEcCHHHH
Confidence 64 555555544567899999985 2489999999863211 13589999999999998
Q ss_pred HHHHhhhCC-CCCChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcc
Q 009971 310 LNLLRDKFP-GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 310 ~~ll~~~~~-~~~d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll 364 (521)
..+.+.... ....+..++++.+++.+ ++++|+++|+|.||||+++|++||+.+.
T Consensus 211 ~~l~~~~~~~~~e~~~~d~i~~l~~~~-~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 211 DILENTKPGKGGEIQLTDAIAKLLEEE-PVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred HHHHhCCCCCCCcEEHHHHHHHHHhcC-CEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 755331111 12234578999999855 9999999999999999999999999874
No 36
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=2.2e-33 Score=277.58 Aligned_cols=243 Identities=19% Similarity=0.297 Sum_probs=189.7
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhc--cCCCCcCC
Q 009971 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYAS--NMGGYKNE 168 (521)
Q Consensus 91 ~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~--~~~~~~~~ 168 (521)
+|||||||.|+||+|+|..+||||+||+|+ |||+|++++|.++|+++|+|++++..+++.+|+.+.... ++......
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 589999999999999999999999999986 999999999999999999999999999999999763211 11000000
Q ss_pred CcEEEeecccCC-----CCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecC
Q 009971 169 GFVEVLAAQQSP-----ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 169 ~~v~vl~~~q~~-----~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
+...+......+ ..+.-++||++++++++.+++ .++||+++||++++.|+.++++.|.+.++++|+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~---~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~-- 154 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLD---DEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQ-- 154 (254)
T ss_pred cccccccccCCccceeeeecCCcCCcHHHHHHHHHhcC---CCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEec--
Confidence 000000000000 000113899999999998885 3689999999999999999999999999999887653
Q ss_pred cccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCCh
Q 009971 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (521)
Q Consensus 244 ~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~ 323 (521)
++..||.+.+|+ ++|..|.|||... +.++++|+|+|++++|. ++.+ ...++
T Consensus 155 --~~~~yG~v~~d~-~~V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il~-~l~~---~~~~~ 205 (254)
T TIGR02623 155 --PPGRFGALDLEG-EQVTSFQEKPLGD----------------------GGWINGGFFVLNPSVLD-LIDG---DATVW 205 (254)
T ss_pred --CCCcccEEEECC-CeEEEEEeCCCCC----------------------CCeEEEEEEEEcHHHHh-hccc---cCchh
Confidence 356799999884 6999999998532 24899999999999985 5543 23356
Q ss_pred hhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCC
Q 009971 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIP 369 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~ 369 (521)
.+++++.++++ .++++|.++|+|.||||+++|.+|+..+.....|
T Consensus 206 ~~d~i~~l~~~-~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~~~~ 250 (254)
T TIGR02623 206 EQEPLETLAQR-GELSAYEHSGFWQPMDTLRDKNYLEELWESGRAP 250 (254)
T ss_pred hhhHHHHHHhC-CCEEEEeCCCEEecCCchHHHHHHHHHHHcCCCC
Confidence 78999999984 4799999999999999999999999988766544
No 37
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=3.1e-33 Score=277.44 Aligned_cols=240 Identities=20% Similarity=0.278 Sum_probs=184.5
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccC-----CC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNM-----GG 164 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~-----~~ 164 (521)
|+|||||||.||||+|+|..+||||+|++|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+.+.+.. +.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 6899999999999999999999999999987 99999999999999999999999999999999985432210 00
Q ss_pred Cc---C----CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeecc-c--cHHHHHHHHHhcCCc
Q 009971 165 YK---N----EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR-M--DYERFIQAHRETDAD 234 (521)
Q Consensus 165 ~~---~----~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~-~--dl~~ll~~h~~~~ad 234 (521)
.. . .....+.... +.+..||+++++.++.++. .++|++++||+++. . ++.++++.|++++++
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~-----~~~~~G~~~al~~~~~~~~---~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ 151 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVR-----QKEQKGLGHAVLCAEPFVG---DEPFAVILGDDIVVSEEPALKQMIDLYEKYGCS 151 (260)
T ss_pred HHHHHHhhhccccceEEEEe-----cCCCCCHHHHHHHHHHhhC---CCCEEEEeccceecCCcHHHHHHHHHHHHhCCC
Confidence 00 0 0001111111 1235899999999998874 37899999999765 3 799999999988888
Q ss_pred EEEEEEecCcccCcceeEEEeCC----CCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHH
Q 009971 235 ITVAALPMDEKRATAFGLMKIDE----EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVML 310 (521)
Q Consensus 235 iti~~~~~~~~~~~~~g~v~~d~----~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~ 310 (521)
+ +++...+.+++..||++.+|. +++|+.+.|||..... .++++++|+|+|++++|.
T Consensus 152 i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~~~~~~ 211 (260)
T TIGR01099 152 I-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLTPDIFD 211 (260)
T ss_pred E-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECCHHHHH
Confidence 6 555555544567899998862 3699999999853211 135899999999999987
Q ss_pred HHHhhhCCCC-CChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHH
Q 009971 311 NLLRDKFPGA-NDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNA 359 (521)
Q Consensus 311 ~ll~~~~~~~-~d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~A 359 (521)
.+........ ..+..++++.+++ ..++++|.++|+|.||||+++|++|
T Consensus 212 ~l~~~~~~~~~~~~l~d~i~~l~~-~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 212 LLEETPPGAGGEIQLTDALRKLLE-KETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHhCCCCCCCceeHHHHHHHHHh-cCCEEEEEcceEEEeCCCHHHHhhC
Confidence 6544222212 2345789999998 4689999999999999999999875
No 38
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=4.3e-33 Score=279.17 Aligned_cols=231 Identities=25% Similarity=0.402 Sum_probs=185.1
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEec-CChHHHHHHHHHhhhccCCCCcCCC
Q 009971 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQ-FNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 91 ~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~-~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|..+|+++|+|+++ +..+.+.+|+.++..|++
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~g~~~g~------- 72 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGV------- 72 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhccccccCc-------
Confidence 589999999999999999999999999987 99999999999999999998886 555788899887544432
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-eccccHHHHHHHHHhcCCcEEEEEEecCcccCc
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~ 248 (521)
++....|. + +.||++++..++.++++ ++|+++.||. +++.++.++++.|.++++++|+++.+++ ++.
T Consensus 73 --~i~~~~q~--~---~~Gta~al~~a~~~l~~---~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~--~p~ 140 (286)
T TIGR01207 73 --NLSYAVQP--S---PDGLAQAFIIGEDFIGG---DPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS--DPE 140 (286)
T ss_pred --eEEEEEcc--C---CCCHHHHHHHHHHHhCC---CCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc--CHH
Confidence 22222231 1 38999999999998863 6788889997 5678999999999888888999888765 357
Q ss_pred ceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC-CCCCh-hhc
Q 009971 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-GANDF-GSE 326 (521)
Q Consensus 249 ~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~-~~~d~-~~d 326 (521)
.||++.+|++|+|+++.|||..+. ++++++|+|+|++++++ +++...+ ...++ .++
T Consensus 141 ~yGvv~~d~~g~V~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~eitd 198 (286)
T TIGR01207 141 RYGVVEFDSNGRAISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVE-IARQLKPSARGELEITD 198 (286)
T ss_pred HCceEEECCCCeEEEEEECCCCCC---------------------CCEEEEEEEEEchHHHH-HHhhcCCCCCCcEeHHH
Confidence 899999998899999999986432 35899999999999876 5543333 22333 479
Q ss_pred chHhhhhCCceEEEEEe-cce-EEecCCHHHHHHHhhhcc
Q 009971 327 VIPGATSIGMRVQAYLY-DGY-WEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 327 il~~li~~~~~I~~~~~-~g~-w~dIgt~edy~~An~~ll 364 (521)
+++.+++++ ++.++.+ +|+ |+|+||+++|++|+..+.
T Consensus 199 v~~~~l~~g-~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 199 LNRVYLEEG-RLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred HHHHHHHcC-CcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 999998855 3555554 676 999999999999998664
No 39
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00 E-value=1.2e-32 Score=269.01 Aligned_cols=233 Identities=25% Similarity=0.395 Sum_probs=191.8
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
|+|||||||.|+||+|+|..+||||+||+|+ |||+|++++|.++|+++|+|++++..+.+.+|+.+..+|++
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~------- 72 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGSRFGV------- 72 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchhhcCC-------
Confidence 7899999999999999999999999999987 99999999999999999999999998999999987544321
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCcc
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATA 249 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~ 249 (521)
.+.++. + .+..|++++++.++.+++ .++|++++||++++.++.++++.|.++++++++++.+.++ +..
T Consensus 73 ~i~~~~--~-----~~~~g~~~sl~~a~~~i~---~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 140 (236)
T cd04189 73 RITYIL--Q-----EEPLGLAHAVLAARDFLG---DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED--PRR 140 (236)
T ss_pred eEEEEE--C-----CCCCChHHHHHHHHHhcC---CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC--ccc
Confidence 122321 1 124799999999998875 3689999999999999999999999989999888887643 467
Q ss_pred eeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCC--CCChhhcc
Q 009971 250 FGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG--ANDFGSEV 327 (521)
Q Consensus 250 ~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~--~~d~~~di 327 (521)
|+.+.+|+ ++|..+.|||..+. +.+.++|+|+|++++|..+ ....+. ...+..++
T Consensus 141 ~g~~~~d~-~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~~~d~ 197 (236)
T cd04189 141 FGVAVVDD-GRIVRLVEKPKEPP---------------------SNLALVGVYAFTPAIFDAI-SRLKPSWRGELEITDA 197 (236)
T ss_pred ceEEEEcC-CeEEEEEECCCCCC---------------------CCEEEEEEEEeCHHHHHHH-HhcCCCCCCeEEHHHH
Confidence 88888874 59999999975332 2488999999999998744 322221 12234789
Q ss_pred hHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhccc
Q 009971 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (521)
Q Consensus 328 l~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~ 365 (521)
++.+++.+.+|++++++++|.||||+++|.+||+.+++
T Consensus 198 ~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 198 IQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred HHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 99999878899999999999999999999999998764
No 40
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=100.00 E-value=2.9e-32 Score=275.25 Aligned_cols=244 Identities=23% Similarity=0.318 Sum_probs=191.2
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhcc--CCCC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--MGGY 165 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~--~~~~ 165 (521)
+-|+|||||||.|+||+|+|..+||+|+|++|+ |+|+|+|++|.++|+++|+|++++..+++.+|+.+.+.|+ +..+
T Consensus 7 ~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~ 85 (302)
T PRK13389 7 KVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKR 85 (302)
T ss_pred cceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhhh
Confidence 458999999999999999999999999999987 9999999999999999999999999999999998654432 1000
Q ss_pred cCC----C-------cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeecc--------ccHHHHHH
Q 009971 166 KNE----G-------FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR--------MDYERFIQ 226 (521)
Q Consensus 166 ~~~----~-------~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~--------~dl~~ll~ 226 (521)
... + ...+....| ....||+++++.++.++. +++|++++||++++ .|+.++++
T Consensus 86 ~~~~~~~e~~~i~~~~~~i~~~~q-----~~~~Gtg~Av~~a~~~~~---~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~ 157 (302)
T PRK13389 86 VKRQLLDEVQSICPPHVTIMQVRQ-----GLAKGLGHAVLCAHPVVG---DEPVAVILPDVILDEYESDLSQDNLAEMIR 157 (302)
T ss_pred hhhHHHHhhhhccccCceEEEeec-----CCCCChHHHHHHHHHHcC---CCCEEEEeCcceecccccccccccHHHHHH
Confidence 000 0 011111112 224899999999988775 36899999999764 78999999
Q ss_pred HHHhcCCcEEEEEEecCcccCcceeEEEeCC-------CCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeE
Q 009971 227 AHRETDADITVAALPMDEKRATAFGLMKIDE-------EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASM 299 (521)
Q Consensus 227 ~h~~~~aditi~~~~~~~~~~~~~g~v~~d~-------~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (521)
.|.+++++ ++++.+.+ ++..||++..|+ +++|..+.|||..... .++++++
T Consensus 158 ~h~~~~~~-tl~~~~~~--~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~-------------------~s~~~~~ 215 (302)
T PRK13389 158 RFDETGHS-QIMVEPVA--DVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA-------------------PSNLAIV 215 (302)
T ss_pred HHHhcCCC-EEEEEEcc--cCCcceEEEecCcccccCCcceEEEEEECCCCCCC-------------------CccEEEE
Confidence 99888876 67776653 467899998863 3579999999974211 1358999
Q ss_pred EEEEEeHHHHHHHHhhhCC--CCCChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcc
Q 009971 300 GIYVISKDVMLNLLRDKFP--GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 300 GIyifs~~vl~~ll~~~~~--~~~d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll 364 (521)
|+|+|++++|. +++...+ ....+.+|+++.+++ +.++++|.++|+|+|||||++|.+|+..+.
T Consensus 216 GiYi~~~~il~-~l~~~~~~~~~e~~l~d~i~~l~~-~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 216 GRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIE-KETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred EEEEECHHHHH-HHHhCCCCCCCeeeHHHHHHHHHH-cCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 99999999985 6654332 223456899999998 568999999999999999999999999874
No 41
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=100.00 E-value=3.8e-32 Score=268.69 Aligned_cols=244 Identities=18% Similarity=0.281 Sum_probs=191.0
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhcc--CCCCcCCC
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--MGGYKNEG 169 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~--~~~~~~~~ 169 (521)
|||||||.|+||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+..... +......+
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 69999999999999999999999999986 9999999999999999999999999999999998743211 11011111
Q ss_pred cEEEeecccCC-----CCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCc
Q 009971 170 FVEVLAAQQSP-----ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDE 244 (521)
Q Consensus 170 ~v~vl~~~q~~-----~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~ 244 (521)
.+.++.....+ ....-.+||++++++++.++.+ .++|++++||++++.|+.++++.|..+++++|+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~--~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~--- 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD--DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH--- 154 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcCC--CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec---
Confidence 12222210000 0000126799999999988752 2689999999999999999999999999999887653
Q ss_pred ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChh
Q 009971 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (521)
Q Consensus 245 ~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~ 324 (521)
+...||.+.+|++|+|..+.|||..+ +.++++|+|+|++++++. +... ..++.
T Consensus 155 -~~~~~g~v~~d~~g~V~~~~ekp~~~----------------------~~~i~~Giyi~~~~l~~~-l~~~---~~~~~ 207 (253)
T cd02524 155 -PPGRFGELDLDDDGQVTSFTEKPQGD----------------------GGWINGGFFVLEPEVFDY-IDGD---DTVFE 207 (253)
T ss_pred -CCCcccEEEECCCCCEEEEEECCCCC----------------------CceEEEEEEEECHHHHHh-hccc---cchhh
Confidence 24678999999889999999998643 137899999999999864 4322 44566
Q ss_pred hcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCC
Q 009971 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIP 369 (521)
Q Consensus 325 ~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~ 369 (521)
+++++.+++. .++++|.++|+|.||+|+++|..|+..+.....|
T Consensus 208 ~d~l~~li~~-~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~~~~ 251 (253)
T cd02524 208 REPLERLAKD-GELMAYKHTGFWQCMDTLRDKQTLEELWNSGKAP 251 (253)
T ss_pred HHHHHHHHhc-CCEEEEecCCEEEeCcCHHHHHHHHHHHHcCCCC
Confidence 8999999985 4899999999999999999999999888665443
No 42
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=1.4e-32 Score=266.22 Aligned_cols=219 Identities=24% Similarity=0.369 Sum_probs=179.5
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCc
Q 009971 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGF 170 (521)
Q Consensus 91 ~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 170 (521)
+|||||||.|+||+|+|..+||||+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+ ..|+
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~-~~~~--------- 69 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD-SRFG--------- 69 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc-ccCC---------
Confidence 589999999999999999999999999987 99999999999999999999999999999999986 2232
Q ss_pred EEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHH--hcCCcEEEEEEecCcccCc
Q 009971 171 VEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHR--ETDADITVAALPMDEKRAT 248 (521)
Q Consensus 171 v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~--~~~aditi~~~~~~~~~~~ 248 (521)
+.+....+ +.+..||+++++.++..+++ ++|++++||++++.|+.++++.|. +.++++++...+.+ ...
T Consensus 70 ~~i~~~~~----~~~~~g~~~~l~~~~~~~~~---~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 140 (221)
T cd06422 70 LRITISDE----PDELLETGGGIKKALPLLGD---EPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP--GHN 140 (221)
T ss_pred ceEEEecC----CCcccccHHHHHHHHHhcCC---CCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC--CCC
Confidence 22222222 11247999999999988853 689999999999999999999998 45566666655543 356
Q ss_pred ceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhcch
Q 009971 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI 328 (521)
Q Consensus 249 ~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~dil 328 (521)
.||.+.+|++++|..+.+||.. +++++|+|+|++++|..+.+. ....++++
T Consensus 141 ~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~~~d~~ 191 (221)
T cd06422 141 GVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFSLNPLW 191 (221)
T ss_pred CcceEEECCCCcEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----cccHHHHH
Confidence 7899999988999999888742 388999999999998754331 23357899
Q ss_pred HhhhhCCceEEEEEecceEEecCCHHHHHHH
Q 009971 329 PGATSIGMRVQAYLYDGYWEDIGTIEAFYNA 359 (521)
Q Consensus 329 ~~li~~~~~I~~~~~~g~w~dIgt~edy~~A 359 (521)
+.+++ ..++.+|.++++|.||+|+++|.+|
T Consensus 192 ~~l~~-~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 192 DRAIA-AGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred HHHHH-cCCeEEEecCCEEEcCCCHHHHhhC
Confidence 99998 4589999999999999999999875
No 43
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=100.00 E-value=2e-31 Score=257.46 Aligned_cols=223 Identities=27% Similarity=0.499 Sum_probs=183.3
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcE
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (521)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+|+.+.+.++. . +
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~~~~~------~-~ 72 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGYRGGI------R-I 72 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCccccCc------e-E
Confidence 69999999999999999999999999987 99999999999999999999999999999999876332211 1 2
Q ss_pred EEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCccee
Q 009971 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (521)
Q Consensus 172 ~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g 251 (521)
.+.. .+ + ..|+++++..++..++ .++|++++||++++.++.++++.|++.+.++++++.+.+. ...|+
T Consensus 73 ~~~~-~~---~---~~G~~~~l~~a~~~~~---~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~ 140 (223)
T cd06915 73 YYVI-EP---E---PLGTGGAIKNALPKLP---EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--ASRYG 140 (223)
T ss_pred EEEE-CC---C---CCcchHHHHHHHhhcC---CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--CCcce
Confidence 1211 11 1 3899999999988774 4789999999999889999999998888888888877543 45788
Q ss_pred EEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhcchHhh
Q 009971 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGA 331 (521)
Q Consensus 252 ~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~dil~~l 331 (521)
.+.+|++|+|..+.+||.... ++++++|+|+|++++|..+... ..++.+++++.+
T Consensus 141 ~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~~~~~l 195 (223)
T cd06915 141 NVTVDGDGRVIAFVEKGPGAA---------------------PGLINGGVYLLRKEILAEIPAD----AFSLEADVLPAL 195 (223)
T ss_pred eEEECCCCeEEEEEeCCCCCC---------------------CCcEEEEEEEECHHHHhhCCcc----CCChHHHHHHHH
Confidence 888988899999999876431 3588999999999998743221 234567899999
Q ss_pred hhCCceEEEEEecceEEecCCHHHHHHHh
Q 009971 332 TSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360 (521)
Q Consensus 332 i~~~~~I~~~~~~g~w~dIgt~edy~~An 360 (521)
++.+ ++.+|+++++|.||||++||..|+
T Consensus 196 ~~~~-~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 196 VKRG-RLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred HhcC-cEEEEecCCeEEecCCHHHHHhhC
Confidence 9755 999999999999999999999874
No 44
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.98 E-value=7e-31 Score=252.75 Aligned_cols=217 Identities=29% Similarity=0.526 Sum_probs=181.4
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcE
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (521)
|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+.+.++. .+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~-------~i 72 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGSKFGV-------NI 72 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChhhcCc-------eE
Confidence 69999999999999999999999999986 99999999999999999999999988999999887432221 12
Q ss_pred EEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCccee
Q 009971 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (521)
Q Consensus 172 ~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g 251 (521)
.++. +. ...|++++++.++..+. .++|++++||++++.|+.++++.|.++++++++++.+.+ ++..|+
T Consensus 73 ~~~~--~~-----~~~g~~~al~~~~~~~~---~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 140 (217)
T cd04181 73 EYVV--QE-----EPLGTAGAVRNAEDFLG---DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--DPSRYG 140 (217)
T ss_pred EEEe--CC-----CCCccHHHHHHhhhhcC---CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--CCCcce
Confidence 2221 21 13799999999998772 479999999999999999999999999999999888765 467899
Q ss_pred EEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhcchHhh
Q 009971 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGA 331 (521)
Q Consensus 252 ~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~dil~~l 331 (521)
.+.+|++|+|..+.|||.... .+++++|+|+|++++++ ++++......++..++++.+
T Consensus 141 ~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~~~~l 198 (217)
T cd04181 141 VVELDDDGRVTRFVEKPTLPE---------------------SNLANAGIYIFEPEILD-YIPEILPRGEDELTDAIPLL 198 (217)
T ss_pred EEEEcCCCcEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHH-hhhhcCCcccccHHHHHHHH
Confidence 999998899999999986532 25899999999999885 55543333456678999999
Q ss_pred hhCCceEEEEEecceEEecC
Q 009971 332 TSIGMRVQAYLYDGYWEDIG 351 (521)
Q Consensus 332 i~~~~~I~~~~~~g~w~dIg 351 (521)
++ ..++++|+++|+|.|||
T Consensus 199 ~~-~~~v~~~~~~g~w~dig 217 (217)
T cd04181 199 IE-EGKVYGYPVDGYWLDIG 217 (217)
T ss_pred Hh-cCCEEEEEcCCEEecCC
Confidence 98 48999999999999986
No 45
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.98 E-value=7.9e-31 Score=253.41 Aligned_cols=220 Identities=25% Similarity=0.450 Sum_probs=178.8
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcE
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (521)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+|++|.+.|+++|+|++++..+++.+|+.+...+++ . +
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~~~~~~------~-i 72 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDGSKFGV------N-I 72 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCccccCc------c-E
Confidence 69999999999999999999999999987 99999999999999999999999999999999886433221 1 2
Q ss_pred EEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCccee
Q 009971 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (521)
Q Consensus 172 ~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g 251 (521)
.++. + ....||++++..+.... .++|++++||++++.++..+++.|+++++++++++.+.. ....||
T Consensus 73 ~~~~--~-----~~~~g~~~~l~~~~~~~----~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~g 139 (220)
T cd06426 73 SYVR--E-----DKPLGTAGALSLLPEKP----TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYE--VQVPYG 139 (220)
T ss_pred EEEE--C-----CCCCcchHHHHHHHhhC----CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcC--CCCcce
Confidence 2221 1 11378999987665433 478999999999999999999999998888888887643 235689
Q ss_pred EEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhcchHhh
Q 009971 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGA 331 (521)
Q Consensus 252 ~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~dil~~l 331 (521)
++..|+ ++|.++.|||... .++++|+|+|+++++.. +++ .......++++.+
T Consensus 140 ~~~~d~-~~v~~~~ek~~~~-----------------------~~~~~Giy~~~~~~~~~-i~~---~~~~~l~~~~~~~ 191 (220)
T cd06426 140 VVETEG-GRITSIEEKPTHS-----------------------FLVNAGIYVLEPEVLDL-IPK---NEFFDMPDLIEKL 191 (220)
T ss_pred EEEECC-CEEEEEEECCCCC-----------------------CeEEEEEEEEcHHHHhh-cCC---CCCcCHHHHHHHH
Confidence 988885 8999999987532 37899999999999864 331 1222257889999
Q ss_pred hhCCceEEEEEecceEEecCCHHHHHHHh
Q 009971 332 TSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360 (521)
Q Consensus 332 i~~~~~I~~~~~~g~w~dIgt~edy~~An 360 (521)
++.+.++.+|+++++|.||||+++|.+||
T Consensus 192 i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 192 IKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 88788899999999999999999999986
No 46
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=6.9e-30 Score=243.86 Aligned_cols=249 Identities=22% Similarity=0.335 Sum_probs=202.4
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhcc--CCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--MGG 164 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~--~~~ 164 (521)
++-.+|||+|||.||||-|.|+..||-||||-++ |+|+|+++.+.++||++|++||+.++..|.+|+...+.+. +..
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~ 80 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEK 80 (291)
T ss_pred CcccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHH
Confidence 5678999999999999999999999999999875 9999999999999999999999999999999998765332 000
Q ss_pred CcC----------CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccc---cHHHHHHHHHhc
Q 009971 165 YKN----------EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRM---DYERFIQAHRET 231 (521)
Q Consensus 165 ~~~----------~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~---dl~~ll~~h~~~ 231 (521)
+-+ ...+.+....|. + ++|.++|+.+|..++.+ ++|.|+.+|.++.. -+.++++.+.+.
T Consensus 81 ~~K~~~L~~v~~i~~~~~i~~vRQ~--e---~~GLGhAVl~A~~~vg~---EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~ 152 (291)
T COG1210 81 RGKRELLEEVRSIPPLVTISFVRQK--E---PLGLGHAVLCAKPFVGD---EPFAVLLPDDLVDSEKPCLKQMIELYEET 152 (291)
T ss_pred hCHHHHHHHHHhcccCceEEEEecC--C---CCcchhHHHhhhhhcCC---CceEEEeCCeeecCCchHHHHHHHHHHHh
Confidence 000 112344444452 2 48999999999999874 79999999997764 289999999998
Q ss_pred CCcEEEEEEecCcccCcceeEEE----eCCC-CCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeH
Q 009971 232 DADITVAALPMDEKRATAFGLMK----IDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISK 306 (521)
Q Consensus 232 ~aditi~~~~~~~~~~~~~g~v~----~d~~-grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~ 306 (521)
+.+ ++.+.+++.++.+.||++. ++.+ .+|..+.|||+.... .|+++-.|-|+|+|
T Consensus 153 g~s-vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~A-------------------PSnlai~GRYil~p 212 (291)
T COG1210 153 GGS-VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEA-------------------PSNLAIVGRYVLTP 212 (291)
T ss_pred CCc-EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCC-------------------CcceeeeeeeecCH
Confidence 876 4777778777889999997 4333 589999999976643 36899999999999
Q ss_pred HHHHHHHhhhCCCC-CC-hhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccC
Q 009971 307 DVMLNLLRDKFPGA-ND-FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 366 (521)
Q Consensus 307 ~vl~~ll~~~~~~~-~d-~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~ 366 (521)
++|. +|++..++. ++ ..+|.+..+++ ...+++|.++|.-+|+|+...|.+|+..+..+
T Consensus 213 ~IFd-~L~~~~~G~ggEiQLTDai~~L~~-~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~ 272 (291)
T COG1210 213 EIFD-ILEETKPGAGGEIQLTDAIKKLLK-KEPVLAYVFEGKRYDCGSKLGYIKANVEFALR 272 (291)
T ss_pred HHHH-HHhhCCCCCCCEeeHHHHHHHHHh-hCcEEEEEecccEEccCCcccHHHHHHHHHhh
Confidence 9997 666544432 22 35899999998 58999999999999999999999999988654
No 47
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.97 E-value=1.1e-29 Score=245.36 Aligned_cols=205 Identities=19% Similarity=0.310 Sum_probs=160.2
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
++|||||||.|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+.+.|+... +..
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~--~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPKS--SLM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhcccccccc--Ccc
Confidence 5899999999999999999999999999986 9999999999999999999999999999999999865554211 001
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHH--HHhhhcCcceEEEEeCCeeccccHHHHHHHHHhc-----CCcEEEEEEec
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYL--WLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRET-----DADITVAALPM 242 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~--~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~-----~aditi~~~~~ 242 (521)
.+.++. + .+ ..|++++++... ..+ .++||+++||++++.|+.++++.|+++ ++++|+++.+.
T Consensus 78 ~i~~~~--~--~~---~~~~~~al~~~~~~~~~----~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~ 146 (217)
T cd04197 78 IVIIIM--S--ED---CRSLGDALRDLDAKGLI----RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEA 146 (217)
T ss_pred eEEEEe--C--CC---cCccchHHHHHhhcccc----CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeC
Confidence 133221 2 11 367888886543 223 368999999999999999999999884 78899988877
Q ss_pred Cccc----CcceeEEEeCCC-CCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHH
Q 009971 243 DEKR----ATAFGLMKIDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM 309 (521)
Q Consensus 243 ~~~~----~~~~g~v~~d~~-grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl 309 (521)
+.+. ...++++.+|++ ++|+.|.|||..+.....+++..++...+.. ..++++.++|||+|++++|
T Consensus 147 ~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~-~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 147 SPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEV-EIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred CCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcE-EEECCceecCEEEeCCCCC
Confidence 6433 223678888866 8999999999876554555666666665543 4567899999999999764
No 48
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.97 E-value=5.3e-29 Score=237.53 Aligned_cols=199 Identities=48% Similarity=0.832 Sum_probs=162.0
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcE
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (521)
|||||||.||||+|+|..+||+|+|++|++|||+|+++++.++|+++|+|+++++.+++.+|+.+...|++. .....+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~--~~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDLD--RKNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccCC--CCCCCE
Confidence 699999999999999999999999998755999999999999999999999999999999999875544321 111224
Q ss_pred EEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCccee
Q 009971 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (521)
Q Consensus 172 ~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g 251 (521)
.++...+. .+++|..||+++++.++..+++...++|++++||++++.++.++++.|+++++++|+++.
T Consensus 79 ~~~~~~~~-~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~----------- 146 (200)
T cd02508 79 FILPPQQR-KGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK----------- 146 (200)
T ss_pred EEeCcccC-CCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh-----------
Confidence 45433321 134467999999999999886433478999999999999999999999998888887664
Q ss_pred EEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhC-CCCCChhhcchHh
Q 009971 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF-PGANDFGSEVIPG 330 (521)
Q Consensus 252 ~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~-~~~~d~~~dil~~ 330 (521)
+++|+|+|++++|.++++... ....++.+|+++.
T Consensus 147 ---------------------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~ 181 (200)
T cd02508 147 ---------------------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPA 181 (200)
T ss_pred ---------------------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 257999999999876766432 2344667899999
Q ss_pred hhhCCceEEEEEecceEEec
Q 009971 331 ATSIGMRVQAYLYDGYWEDI 350 (521)
Q Consensus 331 li~~~~~I~~~~~~g~w~dI 350 (521)
+++. .++++|.++|+|.||
T Consensus 182 l~~~-~~v~~~~~~g~w~di 200 (200)
T cd02508 182 MLKK-LKIYAYEFNGYWADI 200 (200)
T ss_pred Hhcc-CcEEEEEeCCeEecC
Confidence 9985 799999999999996
No 49
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.96 E-value=2.2e-28 Score=238.31 Aligned_cols=223 Identities=21% Similarity=0.229 Sum_probs=168.2
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcE
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (521)
.||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|++++++++++.. ....++.+.+... . . .+
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~-~~~~~~~~~~~~~---~-~--~~ 72 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEH-NTKFHLDESLKLL---A-P--NA 72 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHH-hhhhhHHHHHHHh---C-C--CC
Confidence 48999999999999999999999999986 99999999999999999999986332 2222332211100 0 0 12
Q ss_pred EEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCccee
Q 009971 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (521)
Q Consensus 172 ~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g 251 (521)
.++.... . ..||+++++.++..+.. .++|++++||++++.++.++++.|.+.+.+.++++.+. ....|+
T Consensus 73 ~i~~~~~---~---~~g~~~~l~~a~~~l~~--~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~ 141 (231)
T cd04183 73 TVVELDG---E---TLGAACTVLLAADLIDN--DDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFS---SHPRWS 141 (231)
T ss_pred EEEEeCC---C---CCcHHHHHHHHHhhcCC--CCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeC---CCCCeE
Confidence 2221111 1 38999999999987742 36899999999999999999998887777777766654 234799
Q ss_pred EEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHH-HHHHHHhhh----CCCCC-Chhh
Q 009971 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKD-VMLNLLRDK----FPGAN-DFGS 325 (521)
Q Consensus 252 ~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~-vl~~ll~~~----~~~~~-d~~~ 325 (521)
.+.+|++|+|..+.+|+.. +.+.++|+|+|+++ .|.+++++. ..... .+.+
T Consensus 142 ~v~~d~~~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 198 (231)
T cd04183 142 YVKLDENGRVIETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYIS 198 (231)
T ss_pred EEEECCCCCEEEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEh
Confidence 9999989999999887431 23789999999987 555555431 11122 3457
Q ss_pred cchHhhhhCCceEEEEEe-cceEEecCCHHHH
Q 009971 326 EVIPGATSIGMRVQAYLY-DGYWEDIGTIEAF 356 (521)
Q Consensus 326 dil~~li~~~~~I~~~~~-~g~w~dIgt~edy 356 (521)
++++.+++.+.+|+++.+ +++|.||||+++|
T Consensus 199 d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 199 PLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred HHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 899999987889999999 6899999999997
No 50
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.96 E-value=1.8e-28 Score=238.62 Aligned_cols=223 Identities=18% Similarity=0.267 Sum_probs=170.4
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcE
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (521)
|||||||.|+||+|+|..+||||+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+... . + +
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~--~--------~-~ 68 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY--P--------N-I 68 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc--C--------C-e
Confidence 69999999999999999999999999986 999999999999999999999999999999998752 1 1 3
Q ss_pred EEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCccee
Q 009971 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (521)
Q Consensus 172 ~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g 251 (521)
.++...+ .+ ..|+++++..++.++. ++||+++||++++. ++++.|.++++++++++.+........++
T Consensus 69 ~~~~~~~--~~---~~g~~~s~~~~~~~~~----~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (229)
T cd02523 69 KFVYNPD--YA---ETNNIYSLYLARDFLD----EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWEDEYV 136 (229)
T ss_pred EEEeCcc--hh---hhCcHHHHHHHHHHcC----CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccccccce
Confidence 3332211 01 3899999999988773 68999999999865 46677777888888888764333334455
Q ss_pred EEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhh---hCC--CCCChhhc
Q 009971 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD---KFP--GANDFGSE 326 (521)
Q Consensus 252 ~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~---~~~--~~~d~~~d 326 (521)
....| +++++.+.+|+..+.. ..+.++|+|+|+++++..+.+. ..+ ...++.++
T Consensus 137 ~~~~~-~~~v~~~~~k~~~~~~--------------------~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d 195 (229)
T cd02523 137 KDLDD-AGVLLGIISKAKNLEE--------------------IQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYED 195 (229)
T ss_pred eeecC-ccceEeecccCCCcch--------------------hceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHH
Confidence 44333 3789999988754321 2488999999999998755331 111 23456689
Q ss_pred chHhhhh-CCceEEEEEecceEEecCCHHHHHHHh
Q 009971 327 VIPGATS-IGMRVQAYLYDGYWEDIGTIEAFYNAN 360 (521)
Q Consensus 327 il~~li~-~~~~I~~~~~~g~w~dIgt~edy~~An 360 (521)
+++.+++ .+.+++.+.. ++|.||||++||++|+
T Consensus 196 ~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 196 ALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred HHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 9999987 3555666655 8999999999999874
No 51
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.95 E-value=1.4e-26 Score=231.21 Aligned_cols=234 Identities=24% Similarity=0.333 Sum_probs=170.7
Q ss_pred EEEEEEeCCCCCCCCcccc-CCCccceecCCCcchhHHHHHHhHhC-CCceEEEEecCCh-HHHHHHHHHhhhccCCCCc
Q 009971 90 VLGIILGGGAGTRLYPLTK-KRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~-~~PK~LlpI~G~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~ 166 (521)
|++||||||.||||+|||+ .+||+|+|++|.+|||+|+++++.+. ++++|+|++++.. +.+.+++.+ ..
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~-~~------- 72 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE-GL------- 72 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh-cC-------
Confidence 6899999999999999996 79999999998559999999999998 4999999999755 445566654 00
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhc-CcceEEEEeCCeecc--ccHHHHHHHHHh---cCCcEEEEEE
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH-NVLEFLVLAGDHLYR--MDYERFIQAHRE---TDADITVAAL 240 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~-~~~~~Lvl~gD~l~~--~dl~~ll~~h~~---~~aditi~~~ 240 (521)
..+.++.. +. ..||++++..++..+... .++.+|+++||+++. .++.++++.+.+ .++.+|+.+.
T Consensus 73 --~~~~ii~e---p~----~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~ 143 (274)
T cd02509 73 --PEENIILE---PE----GRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIK 143 (274)
T ss_pred --CCceEEEC---CC----CCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 01233321 11 279999999998877642 356899999999775 557777765543 5677888877
Q ss_pred ecCcccCcceeEEEeCCCC-----CeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhh
Q 009971 241 PMDEKRATAFGLMKIDEEG-----RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD 315 (521)
Q Consensus 241 ~~~~~~~~~~g~v~~d~~g-----rV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~ 315 (521)
+.. +.+.||++..+++. +|..|.|||+....+.+ .....+++++|+|+|+++.|.+.++.
T Consensus 144 p~~--~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------~~~g~~~wNsGiyi~~~~~l~~~l~~ 208 (274)
T cd02509 144 PTR--PETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEY-------------LESGNYLWNSGIFLFRAKTFLEELKK 208 (274)
T ss_pred ecC--CCCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHH-------------hhcCCeEEECceeeeeHHHHHHHHHH
Confidence 653 35789999998653 89999999987654322 11235799999999999888777765
Q ss_pred hCCCC-------------CC---hhhcchHh---------hhhCCceEEEEEecceEEecCCHHH
Q 009971 316 KFPGA-------------ND---FGSEVIPG---------ATSIGMRVQAYLYDGYWEDIGTIEA 355 (521)
Q Consensus 316 ~~~~~-------------~d---~~~dil~~---------li~~~~~I~~~~~~g~w~dIgt~ed 355 (521)
..|.. .+ +..+.++. ++++..++.+++.+..|-|+|++++
T Consensus 209 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 209 HAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 44311 01 11233332 3444667899999999999999875
No 52
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.94 E-value=4.1e-25 Score=214.69 Aligned_cols=222 Identities=23% Similarity=0.344 Sum_probs=173.3
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcE
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (521)
|||||||.|+||++ .+||+|+|++|+ |||+|+++++.++|+++++|+++++.+++.+++.+ +. +
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~-~~-----------~ 64 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN-PN-----------V 64 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC-CC-----------c
Confidence 69999999999996 689999999987 99999999999999999999999888888888765 11 2
Q ss_pred EEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ec-cccHHHHHHHHHhcCCcEEEEEEecCcccCcc
Q 009971 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEKRATA 249 (521)
Q Consensus 172 ~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~ 249 (521)
+++... + ..|+++++++++..++. ..++|++++||+ ++ ..++.++++.|.+.++++++.+.+.+ ++..
T Consensus 65 ~~~~~~----~---~~g~~~ai~~a~~~~~~-~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~--~p~~ 134 (229)
T cd02540 65 EFVLQE----E---QLGTGHAVKQALPALKD-FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELE--DPTG 134 (229)
T ss_pred EEEECC----C---CCCCHHHHHHHHHhhcc-CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcC--CCCC
Confidence 232211 1 27999999999988853 247899999999 44 46799999999887788877776654 3567
Q ss_pred eeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC---CCCChhhc
Q 009971 250 FGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDFGSE 326 (521)
Q Consensus 250 ~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~---~~~d~~~d 326 (521)
|+.+..|++|+|..+.||+...... ...+++++|+|+|+++.|.++++.... ....+.++
T Consensus 135 ~~~~~~~~~~~v~~~~ek~~~~~~~-----------------~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d 197 (229)
T cd02540 135 YGRIIRDGNGKVLRIVEEKDATEEE-----------------KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTD 197 (229)
T ss_pred ccEEEEcCCCCEEEEEECCCCChHH-----------------HhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHH
Confidence 8888888779999999987532110 012488999999998877666664322 23445689
Q ss_pred chHhhhhCCceEEEEEecce--EEecCCHHHH
Q 009971 327 VIPGATSIGMRVQAYLYDGY--WEDIGTIEAF 356 (521)
Q Consensus 327 il~~li~~~~~I~~~~~~g~--w~dIgt~edy 356 (521)
+++.+++.+.+|+++.++|| |+.|+|+.++
T Consensus 198 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 198 IIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred HHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 99999987889999999865 7888998864
No 53
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.94 E-value=3.9e-26 Score=220.46 Aligned_cols=204 Identities=19% Similarity=0.313 Sum_probs=156.7
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+.+.+... .+ .
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~--~~-~ 76 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLS--SK-M 76 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhccccccc--CC-c
Confidence 5899999999999999999999999999986 999999999999999999999999999999999875432110 01 1
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHH--HHhcCCcEEEEEEecCcc--
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQA--HRETDADITVAALPMDEK-- 245 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~--h~~~~aditi~~~~~~~~-- 245 (521)
.+.++...+ ....||++++++++..+. ++|++++||++++.|+..++++ +..+++++++.+......
T Consensus 77 ~v~~~~~~~-----~~~~Gta~~l~~~~~~i~----~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~ 147 (216)
T cd02507 77 IVDVITSDL-----CESAGDALRLRDIRGLIR----SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVS 147 (216)
T ss_pred eEEEEEccC-----CCCCccHHHHHHHhhcCC----CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCC
Confidence 133332222 124899999999987774 6899999999999999999976 555566666665544322
Q ss_pred -----cCcceeEEEeCCC---CCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHH
Q 009971 246 -----RATAFGLMKIDEE---GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM 309 (521)
Q Consensus 246 -----~~~~~g~v~~d~~---grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl 309 (521)
....++++.+|++ .+++.+.+++... ..+.++..++...++ ...++++.++|||+|+++++
T Consensus 148 ~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~--~~~~i~~~~l~~~~~-~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 148 TEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDED--LELIIRKSLLSKHPN-VTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred ccccccCCCCcEEEEcCCCCceEEEechhhcCcC--cccccCHHHHhcCCC-EEEEcCcccccEEEecCcCC
Confidence 2556889999887 5788887777543 233456777777765 35568899999999998763
No 54
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.93 E-value=6.6e-25 Score=211.58 Aligned_cols=201 Identities=23% Similarity=0.347 Sum_probs=153.5
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCCh-HHHHHHHHHhhhccCCCCcCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS-ASLNRHLSRAYASNMGGYKNE 168 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~~~ 168 (521)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|++++|.++|+++|+|++++.. +.+++++.+. .+.. ..
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~-~~~~----~~ 74 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSF-PLNL----KQ 74 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhc-cccc----Cc
Confidence 6899999999999999999999999999976 99999999999999999999999765 5677777652 1111 01
Q ss_pred CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCc----
Q 009971 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDE---- 244 (521)
Q Consensus 169 ~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~---- 244 (521)
....+. ..+ ....||+++++.++..+. ++|++++||.+++.++..+++.|+++++.+|+++.+...
T Consensus 75 ~~~~~~-~~~-----~~~~gt~~al~~~~~~i~----~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~ 144 (214)
T cd04198 75 KLDEVT-IVL-----DEDMGTADSLRHIRKKIK----KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQ 144 (214)
T ss_pred ceeEEE-ecC-----CCCcChHHHHHHHHhhcC----CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccc
Confidence 111111 111 124899999999987663 689999999999999999999999999999999887532
Q ss_pred -------ccCcceeEEEeCCC-CCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHH
Q 009971 245 -------KRATAFGLMKIDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM 309 (521)
Q Consensus 245 -------~~~~~~g~v~~d~~-grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl 309 (521)
.....+.++.+|++ ++++.+....+. .+.+.++..+|...|+. ..++++.++|||+|+++++
T Consensus 145 ~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~~--~~~~~~~~~~l~~~~~~-~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 145 KGGKGKSKKADERDVIGLDEKTQRLLFITSEEDL--DEDLELRKSLLKRHPRV-TITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred cCCcccccCCCCCceEEEcCCCCEEEEECCHHHh--hhhhhHHHHHHHhCCCE-EEEcCcccceEEEEEeeeC
Confidence 11234667777765 789888754322 23455677888877653 5568899999999998763
No 55
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.92 E-value=7.7e-24 Score=226.21 Aligned_cols=240 Identities=20% Similarity=0.306 Sum_probs=168.6
Q ss_pred EEEEEEeCCCCCCCCccccC-CCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChH-HHHHHHHHhhhccCCCCcC
Q 009971 90 VLGIILGGGAGTRLYPLTKK-RAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA-SLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~-~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~-~i~~~l~~~~~~~~~~~~~ 167 (521)
|.+||||||.||||+|||.. +||+|+|+.|++|||+|+++.|...++++++|+++.... .+.+.+.. +..
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~-~~~------- 72 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLRE-IGK------- 72 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHH-cCC-------
Confidence 57999999999999999997 899999998756999999999999999999999975442 44455543 110
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhc--CcceEEEEeCCeecc--ccHHHHHHHH---HhcCCcEEEEEE
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH--NVLEFLVLAGDHLYR--MDYERFIQAH---RETDADITVAAL 240 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~--~~~~~Lvl~gD~l~~--~dl~~ll~~h---~~~~aditi~~~ 240 (521)
....++.. +. ..||+.++..+...+... .++.+|+++||+++. .+|.++++.+ .+.++.+|+...
T Consensus 73 -~~~~~i~E---p~----~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~ 144 (468)
T TIGR01479 73 -LASNIILE---PV----GRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIV 144 (468)
T ss_pred -CcceEEec---cc----ccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 10112211 11 279999998877666321 234699999998654 3488888865 344555666665
Q ss_pred ecCcccCcceeEEEeCC------CCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHh
Q 009971 241 PMDEKRATAFGLMKIDE------EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR 314 (521)
Q Consensus 241 ~~~~~~~~~~g~v~~d~------~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~ 314 (521)
+. .+.+.||++..++ .++|..|.|||+....+.+ .....+++|+|||+|+++.|.+.+.
T Consensus 145 p~--~p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------l~~g~~~wNsGif~~~~~~ll~~l~ 209 (468)
T TIGR01479 145 PT--HPETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAY-------------LESGDYYWNSGMFLFRASRYLAELK 209 (468)
T ss_pred CC--CCCCCceEEEeCCccCCCCceEEeEEEECCChHHHHHH-------------HhcCCeEEEeeEEEEEHHHHHHHHH
Confidence 43 3457899999873 2589999999987554321 1223579999999999777666555
Q ss_pred hhCCCC-----------------CChhhcchH---------hhhhCCceEEEEEecceEEecCCHHHHHHHh
Q 009971 315 DKFPGA-----------------NDFGSEVIP---------GATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360 (521)
Q Consensus 315 ~~~~~~-----------------~d~~~dil~---------~li~~~~~I~~~~~~g~w~dIgt~edy~~An 360 (521)
+..|+. ..+..++++ .++++..++++++.+..|-|+|++++|+++-
T Consensus 210 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 210 KHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred HHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 433310 011134444 3355567899999999999999999998874
No 56
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.91 E-value=5.2e-23 Score=202.28 Aligned_cols=235 Identities=18% Similarity=0.218 Sum_probs=161.9
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
|++.+||||+|.|+||. +|+|+|++|+ |||+|+++.|.++++++|+|+++ .+.+.+++.+ +.
T Consensus 1 m~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~--~~~i~~~~~~-~~-------- 62 (245)
T PRK05450 1 MKFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATD--DERIADAVEA-FG-------- 62 (245)
T ss_pred CceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECC--cHHHHHHHHH-cC--------
Confidence 46889999999999995 5999999987 99999999999999999999885 3567777654 11
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecCc-
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDE- 244 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~~- 244 (521)
+.++...+ .++.|++... .+...++....+.+|+++||+ +++ .++.++++.|..++.++++++.+..+
T Consensus 63 ---~~v~~~~~-----~~~~gt~~~~-~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~ 133 (245)
T PRK05450 63 ---GEVVMTSP-----DHPSGTDRIA-EAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDA 133 (245)
T ss_pred ---CEEEECCC-----cCCCchHHHH-HHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCH
Confidence 22322211 1236776533 344333211246799999999 665 55999999988777777776665522
Q ss_pred ---ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCC
Q 009971 245 ---KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN 321 (521)
Q Consensus 245 ---~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~ 321 (521)
.++..++++ +|++|+|+.|.|||..+....- + .-...+++.++|||+|+++++..+.+. .+...
T Consensus 134 ~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~~----------~-~~~~~~~~~~~Giy~~~~~~l~~~~~~-~~~~~ 200 (245)
T PRK05450 134 EEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDAF----------A-DSAPTPVYRHIGIYAYRRGFLRRFVSL-PPSPL 200 (245)
T ss_pred HHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCcc----------c-cccCccccEEEEEEecCHHHHHHHHhC-CCCcc
Confidence 234556655 8888999999999853321000 0 000114699999999999999866542 22111
Q ss_pred Chh--hcchHhhhhCCceEEEEEecc-eEEecCCHHHHHHHhhhc
Q 009971 322 DFG--SEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 322 d~~--~dil~~li~~~~~I~~~~~~g-~w~dIgt~edy~~An~~l 363 (521)
+.. .+.+ .+++.+.+++++.+++ +|.|||||+||..|+..+
T Consensus 201 ~~~~~~~~~-~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 201 EKIESLEQL-RALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred ccchhHHHH-HHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 111 1122 3555689999999996 899999999999999754
No 57
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.90 E-value=6.4e-22 Score=193.83 Aligned_cols=226 Identities=17% Similarity=0.272 Sum_probs=159.3
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhC-CCceEEEEecCChHHHHHHHHHhhhccCCCCcCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (521)
+.+||||+|.|+||. ||+|+|++|+ |||+|+++++.++ |+++|+|++++ +.+.+++.+ +.
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~-~~--------- 62 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES-FG--------- 62 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH-cC---------
Confidence 689999999999996 6999999987 9999999999998 89999999864 667777754 11
Q ss_pred CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhc-CCcEEEEEEecCcc
Q 009971 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRET-DADITVAALPMDEK 245 (521)
Q Consensus 169 ~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~-~aditi~~~~~~~~ 245 (521)
++++...+ .+..||++ +..++..++. ..+.||+++||+ ++. .++..+++.|.+. +.++++++.+.++.
T Consensus 63 --~~~~~~~~-----~~~~gt~~-~~~~~~~~~~-~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 133 (239)
T cd02517 63 --GKVVMTSP-----DHPSGTDR-IAEVAEKLDA-DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDE 133 (239)
T ss_pred --CEEEEcCc-----ccCchhHH-HHHHHHhcCC-CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCH
Confidence 22322111 12367874 6666655542 136799999998 554 5699999988776 67888888775431
Q ss_pred ----cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCC
Q 009971 246 ----RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN 321 (521)
Q Consensus 246 ----~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~ 321 (521)
+...++ +..|++|+|+.|.+++.....+ +. .....++++|+|+|+++++..+... .. .
T Consensus 134 ~~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~~~------------~~--~~~~~~~~~Giy~~~~~~~~~~~~~-~~--~ 195 (239)
T cd02517 134 EELFNPNVVK-VVLDKDGYALYFSRSPIPYPRD------------SS--EDFPYYKHIGIYAYRRDFLLRFAAL-PP--S 195 (239)
T ss_pred HHccCCCCCE-EEECCCCCEEEecCCCCCCCCC------------CC--CCCceeEEEEEEEECHHHHHHHHhC-CC--c
Confidence 122333 4567779999998765422100 00 0013589999999999999866542 11 1
Q ss_pred Ch-hhcchH--hhhhCCceEEEEEecceEEecCCHHHHHHHhh
Q 009971 322 DF-GSEVIP--GATSIGMRVQAYLYDGYWEDIGTIEAFYNANL 361 (521)
Q Consensus 322 d~-~~dil~--~li~~~~~I~~~~~~g~w~dIgt~edy~~An~ 361 (521)
++ ..+.++ .+++.+.+++++..+++|.||||++||.+|++
T Consensus 196 ~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 196 PLEQIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred hhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 12 123333 35666888999999999999999999999985
No 58
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=1.1e-22 Score=191.24 Aligned_cols=224 Identities=20% Similarity=0.300 Sum_probs=149.5
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEe-cCChHHHHHHHHHhhhccCCCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLT-QFNSASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~-~~~~~~i~~~l~~~~~~~~~~~ 165 (521)
|+.|+|||||||.|+||+| ..||||+.++|+ +||+|+|++|.+.|++++++|+ ++..+.+++++.+ +++.
T Consensus 1 ~~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~-~~~~---- 71 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKK-YPFN---- 71 (239)
T ss_pred CCceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhc-CCcc----
Confidence 4569999999999999998 899999999976 9999999999999999999999 8888888888887 3321
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcEEEEEEecCc
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAALPMDE 244 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~~~~~~ 244 (521)
..++.- ..++. .+|+.++..+++.+. +.|++++||++|... ++.+++. .+. ++.+...+.
T Consensus 72 -----~~iv~N-~~y~k----tN~~~Sl~~akd~~~----~~fii~~sD~vye~~~~e~l~~a----~~~-~li~d~~~~ 132 (239)
T COG1213 72 -----AKIVIN-SDYEK----TNTGYSLLLAKDYMD----GRFILVMSDHVYEPSILERLLEA----PGE-GLIVDRRPR 132 (239)
T ss_pred -----eEEEeC-CCccc----CCceeEEeeehhhhc----CcEEEEeCCEeecHHHHHHHHhC----cCC-cEEEecccc
Confidence 223321 11111 456899999988775 579999999999877 5555442 222 233322211
Q ss_pred ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCCh-
Q 009971 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF- 323 (521)
Q Consensus 245 ~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~- 323 (521)
.....-.....+++|++..+..+-.. .+..++|++.|+++++....+. ......+
T Consensus 133 ~~~~~ea~kv~~e~G~i~~igK~l~e-----------------------~~~e~iGi~~l~~~i~~~~~~~-~~e~~~~~ 188 (239)
T COG1213 133 YVGVEEATKVKDEGGRIVEIGKDLTE-----------------------YDGEDIGIFILSDSIFEDTYEL-LVERSEYD 188 (239)
T ss_pred ccccCceeEEEecCCEEehhcCCccc-----------------------ccceeeeeEEechHHHHHHHHH-HhhhhhHH
Confidence 11111122344578999999865442 2478999999999987644331 1111111
Q ss_pred hhcchHhhhhCCceEEEEE--e-cceEEecCCHHHHHHHhhhccc
Q 009971 324 GSEVIPGATSIGMRVQAYL--Y-DGYWEDIGTIEAFYNANLGITK 365 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~--~-~g~w~dIgt~edy~~An~~ll~ 365 (521)
..++.... +.+..-+. + ...|+||+||||+.+|.+.+..
T Consensus 189 ~~~~~~~~---~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~ 230 (239)
T COG1213 189 YREVEKEA---GLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVP 230 (239)
T ss_pred HHHHHHHh---CCceEEeeccccCceeEecCCHHHHHHHHHHHHH
Confidence 12222221 22222222 2 2469999999999999987653
No 59
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.88 E-value=6.8e-21 Score=186.41 Aligned_cols=226 Identities=16% Similarity=0.277 Sum_probs=154.9
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhC-CCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
++.|||||+|.++||. +|+|+|++|+ |||+|+++.+.++ ++++|+|++++ +.+.+++.+ +.
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~-~~-------- 63 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA-FG-------- 63 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH-cC--------
Confidence 5789999999999995 4999999987 9999999999998 89999999853 667777764 21
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ec-cccHHHHHHHHHhcCC-cEEEEEEecCc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDA-DITVAALPMDE 244 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~a-diti~~~~~~~ 244 (521)
++++...+ .+..|++ .+..++..++ .+.|++++||+ +. ..++.++++.|.+.+. ++++++.+.+.
T Consensus 64 ---~~v~~~~~-----~~~~g~~-~~~~a~~~~~---~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 131 (238)
T PRK13368 64 ---GKVVMTSD-----DHLSGTD-RLAEVMLKIE---ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPIST 131 (238)
T ss_pred ---CeEEecCc-----cCCCccH-HHHHHHHhCC---CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCC
Confidence 12221111 1135666 4666665542 47899999998 44 5679999999876543 55555654432
Q ss_pred c----cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCC
Q 009971 245 K----RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (521)
Q Consensus 245 ~----~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~ 320 (521)
. ++..+++ .++++|+++.+.++|.....+. ....++.++|+|+|++++|..+ .......
T Consensus 132 ~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~~~---------------~~~~~~~n~giy~~~~~~l~~~-~~~~~~~ 194 (238)
T PRK13368 132 EEEFESPNVVKV-VVDKNGDALYFSRSPIPSRRDG---------------ESARYLKHVGIYAFRRDVLQQF-SQLPETP 194 (238)
T ss_pred HHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCCCC---------------CCCceeEEEEEEEeCHHHHHHH-HcCCCCh
Confidence 1 1334444 4456789999987652211000 0013589999999999999853 3211111
Q ss_pred C-Chhh-cchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhh
Q 009971 321 N-DFGS-EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLG 362 (521)
Q Consensus 321 ~-d~~~-dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ 362 (521)
. .+.. +++ .+++.+.+++++..+++|+||||++||..|+..
T Consensus 195 ~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 195 LEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred hhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 1 1222 555 565558889999988999999999999999863
No 60
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.86 E-value=1.7e-20 Score=198.86 Aligned_cols=242 Identities=19% Similarity=0.310 Sum_probs=166.1
Q ss_pred ccEEEEEEeCCCCCCCCccccC-CCccceecCCCcchhHHHHHHhHhCCCceEEEEecCCh-HHHHHHHHHhhhccCCCC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKK-RAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS-ASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~-~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~ 165 (521)
|+|.+||||||.||||+|+|.. .||+|+|+.|++|||+++++++...++.+.+|+++... ..+++.+.. .+.
T Consensus 4 ~~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~-~~~----- 77 (478)
T PRK15460 4 SKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQ-LNK----- 77 (478)
T ss_pred CceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHh-cCC-----
Confidence 3589999999999999999998 79999999876799999999999988888888887654 345555544 110
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhc-C--cceEEEEeCCeeccc-c-HHHHHHHHH---hcCCcEEE
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH-N--VLEFLVLAGDHLYRM-D-YERFIQAHR---ETDADITV 237 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~-~--~~~~Lvl~gD~l~~~-d-l~~ll~~h~---~~~aditi 237 (521)
. .. .++. .|.. .+|+.++..+...+... . +.-++++++|+++.. + |.+.+.... +.+..+|+
T Consensus 78 ~-~~--~ii~---EP~~----rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~ 147 (478)
T PRK15460 78 L-TE--NIIL---EPAG----RNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTF 147 (478)
T ss_pred c-cc--cEEe---cCCC----CChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 0 01 1221 1221 67999988776655443 1 356889999997653 2 555444432 23555666
Q ss_pred EEEecCcccCcceeEEEeCCC---------CCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHH
Q 009971 238 AALPMDEKRATAFGLMKIDEE---------GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDV 308 (521)
Q Consensus 238 ~~~~~~~~~~~~~g~v~~d~~---------grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~v 308 (521)
...|. .+.+.||++..++. .+|..|.|||+....+.+- ....|+||+|+|+|+.+.
T Consensus 148 GI~Pt--~PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl-------------~~G~y~WNsGiF~~~a~~ 212 (478)
T PRK15460 148 GIVPD--LPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYV-------------ASGEYYWNSGMFLFRAGR 212 (478)
T ss_pred ecCCC--CCCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHH-------------HcCCEEEecceeheeHHH
Confidence 66553 34678999987642 2799999999988765442 334689999999999887
Q ss_pred HHHHHhhhCCCC--------------CCh--h-hcchHh---------hhhCCceEEEEEecceEEecCCHHHHHHHh
Q 009971 309 MLNLLRDKFPGA--------------NDF--G-SEVIPG---------ATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360 (521)
Q Consensus 309 l~~ll~~~~~~~--------------~d~--~-~dil~~---------li~~~~~I~~~~~~g~w~dIgt~edy~~An 360 (521)
+...++++.|.. .++ . .+.++. ++++..++.+.+.+-.|-|+|++.++.+..
T Consensus 213 ~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 213 YLEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred HHHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 766665543310 011 0 122221 233355688889888899999999998764
No 61
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=1.9e-19 Score=176.28 Aligned_cols=243 Identities=23% Similarity=0.327 Sum_probs=168.1
Q ss_pred cEEEEEEeCCCCCCCCccccC-CCccceecCCCcchhHHHHHHhHh-CCCceEEEEecCCh-HHHHHHHHHhhhccCCCC
Q 009971 89 SVLGIILGGGAGTRLYPLTKK-RAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNS-ASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~-~PK~LlpI~G~~pLI~~~l~~l~~-~gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~ 165 (521)
+|++||||||.|||||||++. +||+++++.|..+|++.+++++.. .+.+++++||+... ..+.+.+.+--. .
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~-----~ 75 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDI-----E 75 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhh-----c
Confidence 378999999999999999875 999999998877999999999998 67899999998665 344455554100 0
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHh-hhcCcceEEEEeCCeecccc--HHHHHHHHH---hcCCcEEEEE
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLF-EEHNVLEFLVLAGDHLYRMD--YERFIQAHR---ETDADITVAA 239 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l-~~~~~~~~Lvl~gD~l~~~d--l~~ll~~h~---~~~aditi~~ 239 (521)
...+ -++. |.. ..|+.++..+.-.+ ++..+.-++++++||+.... |.+.++... +.+..+|+..
T Consensus 76 ~~~~--illE----P~g----RnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI 145 (333)
T COG0836 76 NAAG--IILE----PEG----RNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGI 145 (333)
T ss_pred cccc--eEec----cCC----CCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 0011 1322 223 56999998776444 33344569999999966532 665555432 3455566666
Q ss_pred EecCcccCcceeEEEeCCC------CCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHH
Q 009971 240 LPMDEKRATAFGLMKIDEE------GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLL 313 (521)
Q Consensus 240 ~~~~~~~~~~~g~v~~d~~------grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll 313 (521)
.|. .+.+.||++...+. .+|.+|.|||+....+.+. ....++||+|+|+|+...+.+.+
T Consensus 146 ~Pt--~PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv-------------~sG~y~WNSGmF~Fra~~~l~e~ 210 (333)
T COG0836 146 PPT--RPETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYV-------------ESGEYLWNSGMFLFRASVFLEEL 210 (333)
T ss_pred CCC--CCccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHH-------------HcCceEeeccceEEEHHHHHHHH
Confidence 553 34689999987542 3799999999998876442 34458999999999998776666
Q ss_pred hhhCCCC-------------CChh---hcchH---------hhhhCCceEEEEEecceEEecCCHHHHHHHhh
Q 009971 314 RDKFPGA-------------NDFG---SEVIP---------GATSIGMRVQAYLYDGYWEDIGTIEAFYNANL 361 (521)
Q Consensus 314 ~~~~~~~-------------~d~~---~dil~---------~li~~~~~I~~~~~~g~w~dIgt~edy~~An~ 361 (521)
+.+.|.- .++. .+.+. .+.++..++.+++.+-.|-|+|++.++++...
T Consensus 211 ~~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~ 283 (333)
T COG0836 211 KKHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLD 283 (333)
T ss_pred HhhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhh
Confidence 6544310 0110 11111 12344678999999989999999999987654
No 62
>PLN02917 CMP-KDO synthetase
Probab=99.77 E-value=3.2e-17 Score=164.91 Aligned_cols=236 Identities=16% Similarity=0.191 Sum_probs=158.8
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
+++.+||||+|.++||. +|+|+|++|+ |||+|+++.+..++..+.++| ..+.+.+.+++.+ +.
T Consensus 46 ~~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~VVV-~~~~e~I~~~~~~-~~-------- 108 (293)
T PLN02917 46 SRVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDHIVV-ATDDERIAECCRG-FG-------- 108 (293)
T ss_pred CcEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCEEEE-ECChHHHHHHHHH-cC--------
Confidence 46889999999999996 4999999997 999999999998765444333 3567778777754 11
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEE--EEEecC
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITV--AALPMD 243 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi--~~~~~~ 243 (521)
++++...+ . +..||++. ..++..++. ..+.+++++||. +.+ ..+.++++.+.+. .++++ ++.+..
T Consensus 109 ---v~vi~~~~--~---~~~GT~~~-~~a~~~l~~-~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~ 177 (293)
T PLN02917 109 ---ADVIMTSE--S---CRNGTERC-NEALKKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLK 177 (293)
T ss_pred ---CEEEeCCc--c---cCCchHHH-HHHHHhccC-CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecC
Confidence 22221111 1 12577665 577776642 246899999999 665 5599999988654 33333 333444
Q ss_pred cccCcceeEEE--eCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC---
Q 009971 244 EKRATAFGLMK--IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP--- 318 (521)
Q Consensus 244 ~~~~~~~g~v~--~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~--- 318 (521)
.+++..||.++ .|++|+++.|..++-.+..++ .+ ......+.++|||.|+.+.|. .+.....
T Consensus 178 ~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~----------~~--~~~~i~~~n~Giy~f~~~~L~-~l~~l~~~n~ 244 (293)
T PLN02917 178 PEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSG----------KV--NPQFPYLLHLGIQSYDAKFLK-IYPELPPTPL 244 (293)
T ss_pred HHHhcCCCceEEEECCCCeEEEeecCcCCcCCCc----------cc--ccccceEEEEEEEEeCHHHHH-HHHcCCCCcc
Confidence 45577888875 677888886664322111000 00 011235899999999999988 4432111
Q ss_pred CCCChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccC
Q 009971 319 GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 366 (521)
Q Consensus 319 ~~~d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~ 366 (521)
+..++.+++. ++++|++|.++..+....-|||++||..++..+..+
T Consensus 245 e~e~yLtdl~--~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~ 290 (293)
T PLN02917 245 QLEEDLEQLK--VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRER 290 (293)
T ss_pred cchhccHHHH--HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHc
Confidence 3345567776 556699999998876677999999999999877554
No 63
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=3.8e-17 Score=147.79 Aligned_cols=219 Identities=12% Similarity=0.186 Sum_probs=147.1
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
|.|||||||.||||.|||...||+|+.|.|+ |||+++|+.|.+.||++|+||+|+..+++ +||.+.|.
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkdKy~---------- 68 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKDKYD---------- 68 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHHhcC----------
Confidence 6899999999999999999999999999997 99999999999999999999999998874 78888653
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCcccCcc
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATA 249 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~ 249 (521)
|.++....- . -.....++..++++|+ +.-++.+|.....++ ...+ ...+--.... ... ....
T Consensus 69 -vtLvyN~kY-~----~yNn~ySlyla~d~l~-----ntYiidsDnyl~kNi---f~~~-~~~S~Yfav~-~~~--~tnE 130 (231)
T COG4750 69 -VTLVYNPKY-R----EYNNIYSLYLARDFLN-----NTYIIDSDNYLTKNI---FLTK-ESHSKYFAVY-RSG--KTNE 130 (231)
T ss_pred -eEEEeCchH-H----hhhhHHHHHHHHHHhc-----ccEEeccchHhhhhh---hhcC-cccceEEEEE-ecC--CCce
Confidence 333321110 0 1456789999999986 467889998555442 1111 1111111112 111 1223
Q ss_pred eeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHH---HHHHhhhC-C--CCCCh
Q 009971 250 FGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM---LNLLRDKF-P--GANDF 323 (521)
Q Consensus 250 ~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl---~~ll~~~~-~--~~~d~ 323 (521)
| .+..+.+|+|+.+.--.. .....+|+-.|+.+.- ..+++... . ...-+
T Consensus 131 w-~l~~~~~~ki~~v~Igg~------------------------~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~~k~y 185 (231)
T COG4750 131 W-LLIYNSDGKITRVDIGGL------------------------NGYIMSGISFFDAQFSNKIKKLLKEYYVRLENRKLY 185 (231)
T ss_pred e-EEEEcCCCcEEEEEecCc------------------------ccceEeeeeeecchhHHHHHHHHHHHHhCchhhhHH
Confidence 3 456778899999863211 2377789999996543 33444321 1 11223
Q ss_pred hhcchHhhhhCCceEEEEEecc-eEEecCCHHHHHHHhhhcc
Q 009971 324 GSEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~g-~w~dIgt~edy~~An~~ll 364 (521)
-.++.-.-++ ..+++.-.+++ .-++++++++|......++
T Consensus 186 Wd~v~~~ni~-~l~m~iek~~~n~IyE~DsLdelrk~~~~~l 226 (231)
T COG4750 186 WDTVPMENIK-ELDMYIEKLNDNDIYEFDSLDELRKFEQKFL 226 (231)
T ss_pred HHHHHHHHHH-HHhHhHHhhcCCceEEeccHHHHHhhhhhhc
Confidence 3555555555 56666666654 5789999999988776644
No 64
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.70 E-value=9.3e-16 Score=149.12 Aligned_cols=219 Identities=20% Similarity=0.217 Sum_probs=147.1
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCCh-HHHHHHHHHhhhccCCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNS-ASLNRHLSRAYASNMGG 164 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~ 164 (521)
|+++.+||||||.|+||+ ...||+|+|++|+ |||+|+++++..++ +++|+|++++.. +.+.+.+...
T Consensus 1 ~~~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~------- 69 (227)
T PRK00155 1 MMMVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAK------- 69 (227)
T ss_pred CCceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhcc-------
Confidence 357899999999999996 3579999999986 99999999999865 899999998655 3333322110
Q ss_pred CcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEec
Q 009971 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPM 242 (521)
Q Consensus 165 ~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~ 242 (521)
...+.++.. . .+.+++++.++..+++ .+.+|++.||. +++ ..+.++++.+.+.+ .++...+.
T Consensus 70 ---~~~~~~~~~-----~----~~~~~sv~~~l~~~~~--~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~ 133 (227)
T PRK00155 70 ---DPKVTVVAG-----G----AERQDSVLNGLQALPD--DDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILAVPV 133 (227)
T ss_pred ---CCceEEeCC-----c----chHHHHHHHHHHhCCC--CCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEEEec
Confidence 011222211 1 3468899999877742 46899999999 665 45999999886653 33444343
Q ss_pred CcccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCC
Q 009971 243 DEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (521)
Q Consensus 243 ~~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d 322 (521)
.+ .+.. ++++|.+..+.+ .... ...-+.|.|+.+.|.+++..... ...
T Consensus 134 ~~----~~~~--v~~~g~~~~~~~---r~~~----------------------~~~~~p~~f~~~~l~~~~~~~~~-~~~ 181 (227)
T PRK00155 134 KD----TIKR--SDDGGGIVDTPD---RSGL----------------------WAAQTPQGFRIELLREALARALA-EGK 181 (227)
T ss_pred cc----cEEE--EcCCCceeecCC---hHHh----------------------eeeeCCccchHHHHHHHHHHHHh-cCC
Confidence 22 1222 254566666532 1111 22234889999988877764322 233
Q ss_pred hhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcc
Q 009971 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 323 ~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll 364 (521)
+..|....+.+.+.++..+..+..+++|+|++||..|+..+.
T Consensus 182 ~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~ 223 (227)
T PRK00155 182 TITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILK 223 (227)
T ss_pred CcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHH
Confidence 445555555556788988887777889999999999987654
No 65
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.69 E-value=1.2e-15 Score=147.31 Aligned_cols=211 Identities=18% Similarity=0.207 Sum_probs=146.2
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhC-CCceEEEEecCCh-HHHHHHHHHhhhccCCCCcCCC
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
|||||||.|+||+. ..||+|++++|+ |||+|+++++.++ ++++|+|++++.. +.+..++... .
T Consensus 2 aiIlAaG~s~R~~~---~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~-----------~ 66 (217)
T TIGR00453 2 AVIPAAGRGTRFGS---GVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR-----------A 66 (217)
T ss_pred EEEEcCcccccCCC---CCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC-----------C
Confidence 79999999999973 479999999987 9999999999998 7999999998654 3444433320 0
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-eccc-cHHHHHHHHHhcCCcEEEEEEecCcccC
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMDEKRA 247 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (521)
.++++.. + .+..++++.++..++ ..+.+|+++||+ +++. .+..+++.+.+. +.+++..+..
T Consensus 67 ~~~~~~~-----~----~~~~~sl~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~~---- 129 (217)
T TIGR00453 67 VPKIVAG-----G----DTRQDSVRNGLKALK--DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPVA---- 129 (217)
T ss_pred cEEEeCC-----C----chHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEecc----
Confidence 1233211 0 235578888887762 247899999999 6664 599999987654 3344444432
Q ss_pred cceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhcc
Q 009971 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEV 327 (521)
Q Consensus 248 ~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~di 327 (521)
.++..+|++|.+..+.++.+ -+...+ .|.|+.+.+.+++...... ..+..|.
T Consensus 130 --~~v~~~~~~g~~~~~~~r~~------------------------~~~~~~-p~~f~~~~l~~~~~~~~~~-~~~~~d~ 181 (217)
T TIGR00453 130 --DTLKRVEADGFIVETVDREG------------------------LWAAQT-PQAFRTELLKKALARAKEE-GFEITDD 181 (217)
T ss_pred --ceEEEEcCCCceeecCChHH------------------------eEEEeC-CCcccHHHHHHHHHHHHhc-CCCCCcH
Confidence 23445566677887766321 113344 6899999888776532222 2233566
Q ss_pred hHhhhhCCceEEEEEecceEEecCCHHHHHHHhhh
Q 009971 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLG 362 (521)
Q Consensus 328 l~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ 362 (521)
...+.+.+.++..++.+..+++|+|++||..|+..
T Consensus 182 ~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 182 ASAVEKLGGKVALVEGDALNFKITTPEDLALAEAL 216 (217)
T ss_pred HHHHHHcCCCeEEEecCccccccCCHHHHHHHHHh
Confidence 67777778899998888777899999999888753
No 66
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.68 E-value=1.6e-15 Score=146.32 Aligned_cols=213 Identities=19% Similarity=0.256 Sum_probs=146.5
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 91 ~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
.+||||||.|+||++ ..||+|+|++|+ |||+|+++++...+ +++|+|++++........+.. +.. . .
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-~~~------~-~ 69 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAK-YGL------S-K 69 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHh-ccc------C-C
Confidence 589999999999984 379999999987 99999999999976 999999998766544443321 110 0 1
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-eccc-cHHHHHHHHHhcCCcEEEEEEecCcccC
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMDEKRA 247 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (521)
.+.++.. + .+...+++.++..++....+.+|++.||+ +++. .++++++.+.+.+. .+...+...
T Consensus 70 ~~~~~~~-----~----~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~~~--- 135 (218)
T cd02516 70 VVKIVEG-----G----ATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPVTD--- 135 (218)
T ss_pred CeEEECC-----c----hHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEeccc---
Confidence 1333211 1 34578899998877422357899999999 6664 49999998865543 233333221
Q ss_pred cceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhcc
Q 009971 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEV 327 (521)
Q Consensus 248 ~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~di 327 (521)
++...|++|.+.++.+..+. ....++ ++|+.+.+.+++...... ..+.+|.
T Consensus 136 ---~~~~~~~~g~~~~~~~r~~~------------------------~~~~~P-~~f~~~~~~~~~~~~~~~-~~~~td~ 186 (218)
T cd02516 136 ---TIKRVDDDGVVVETLDREKL------------------------WAAQTP-QAFRLDLLLKAHRQASEE-GEEFTDD 186 (218)
T ss_pred ---cEEEecCCCceeecCChHHh------------------------hhhcCC-CcccHHHHHHHHHHHHhc-CCCcCcH
Confidence 12335667888888763211 255566 899999998887654332 3345676
Q ss_pred hHhhhhCCceEEEEEecceEEecCCHHHHHH
Q 009971 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYN 358 (521)
Q Consensus 328 l~~li~~~~~I~~~~~~g~w~dIgt~edy~~ 358 (521)
...+.+.+.++..+..+..-+||+|++||..
T Consensus 187 ~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 187 ASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred HHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 6666666778888887666679999999954
No 67
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.67 E-value=8.8e-15 Score=143.29 Aligned_cols=229 Identities=14% Similarity=0.125 Sum_probs=144.3
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcE
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (521)
+||||+|.|+||. +|+|++++|+ |||.|+++++..+++++|+|++. .+.+.+++.+ +. +
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~--~~~i~~~~~~-~g-----------~ 60 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGK-PMIVHVAENANESGADRCIVATD--DESVAQTCQK-FG-----------I 60 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeC--HHHHHHHHHH-cC-----------C
Confidence 7999999999994 6999999997 99999999999888999999985 3456665544 11 1
Q ss_pred EEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-eccc-cHHHHHHHHHhcCCcEEEEEEecCcccC--
Q 009971 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMDEKRA-- 247 (521)
Q Consensus 172 ~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~aditi~~~~~~~~~~-- 247 (521)
+++...+ . ...|+ +.+..+...+.....+.++++.||. +.+. .+.++++.+.+.+.+++.++.+..+...
T Consensus 61 ~~v~~~~--~---~~~Gt-~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~ 134 (238)
T TIGR00466 61 EVCMTSK--H---HNSGT-ERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAF 134 (238)
T ss_pred EEEEeCC--C---CCChh-HHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHcc
Confidence 2221111 1 11343 4455454444211246789999999 6664 5999999886656777777776543111
Q ss_pred -cceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChh-h
Q 009971 248 -TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG-S 325 (521)
Q Consensus 248 -~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~-~ 325 (521)
.+...+..|.+|+.+.|...+-......+. ....|+ ...++...|||.|++++|.++........+..+ -
T Consensus 135 ~p~~vk~v~~~~g~alyfsr~~ip~~R~~~~-----~~~tpq---~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~l 206 (238)
T TIGR00466 135 NPNAVKVVLDSQGYALYFSRSLIPFDRDFFA-----KRQTPV---GDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKL 206 (238)
T ss_pred CCCceEEEeCCCCeEEEecCCCCCCCCCccc-----cccccc---ccceeEEEEEEeCCHHHHHHHHhCCCCcccccchh
Confidence 113334447778888886543221100000 000111 013578999999999999877654222111111 1
Q ss_pred cchHhhhhCCceEEEEEecce-EEecCCHHHH
Q 009971 326 EVIPGATSIGMRVQAYLYDGY-WEDIGTIEAF 356 (521)
Q Consensus 326 dil~~li~~~~~I~~~~~~g~-w~dIgt~edy 356 (521)
|-|. ++++|++|++...++. -..|||++|+
T Consensus 207 eqlr-~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 207 EQLR-VLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred HHHh-hhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 2233 3555999999998765 4699999997
No 68
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.67 E-value=4.9e-15 Score=153.61 Aligned_cols=209 Identities=15% Similarity=0.169 Sum_probs=145.5
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCChHHHHHHHHHhhhccCCCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (521)
|+++.+||||||.|+||. ...||+|+|++|+ |||+|+++.+.+.+ +++|+|++++....+.+.+...+
T Consensus 3 mm~v~aIILAAG~GsRmg---~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~~------- 71 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFS---AEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEI------- 71 (378)
T ss_pred CCcceEEEECCCCCccCC---CCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcccC-------
Confidence 567899999999999995 4589999999986 99999999999987 79999999876544433322211
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHhcCCcEEEEEEecC
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~aditi~~~~~~ 243 (521)
..+.++.. + .+..++++.++..++ .+.+|+..||. +++.+ +..+++..++. +.++...++.
T Consensus 72 ---~~v~~v~g-----G----~~r~~SV~~gL~~l~---~d~VLVhdadrPfv~~e~I~~li~~~~~~--~a~i~~~pv~ 134 (378)
T PRK09382 72 ---KFVTLVTG-----G----ATRQESVRNALEALD---SEYVLIHDAARPFVPKELIDRLIEALDKA--DCVLPALPVA 134 (378)
T ss_pred ---CeEEEeCC-----C----chHHHHHHHHHHhcC---CCeEEEeeccccCCCHHHHHHHHHHhhcC--CeEEEEEEec
Confidence 11332211 1 346789999998775 36899999998 66654 88888876543 4566666654
Q ss_pred cccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCCh
Q 009971 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (521)
Q Consensus 244 ~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~ 323 (521)
+ +..|+...+|. ..+..+ ++|+... .+.+.+..+ ... .
T Consensus 135 D--tik~~~~tldR-~~l~~~-QTPQ~f~---------------------------------~~~l~~a~~----~~~-~ 172 (378)
T PRK09382 135 D--TLKRANETVDR-EGLKLI-QTPQLSR---------------------------------TKTLKAAAD----GRG-D 172 (378)
T ss_pred c--CcEEeeeEcCc-ccEEEE-ECCCCCC---------------------------------HHHHHHHHh----CCC-C
Confidence 3 44565445553 355444 7776432 222222221 112 2
Q ss_pred hhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhccc
Q 009971 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~ 365 (521)
.+|..+.+...|.+|..++.+..|++|++|+||..|+..+..
T Consensus 173 ~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 173 FTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred cccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 367777777779999999999999999999999999886643
No 69
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.61 E-value=3.2e-14 Score=138.63 Aligned_cols=219 Identities=16% Similarity=0.144 Sum_probs=143.9
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhC-CCceEEEEecCCh-HHHHHHHHHhhhccCCCCc
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~ 166 (521)
++.+||||||.|+||+ ...||+|++++|+ |||.|+++++.++ .+++|+|+++... ..+.+++.+ +.+.
T Consensus 2 ~~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~-~~~~----- 71 (230)
T PRK13385 2 NYELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQ-LNVA----- 71 (230)
T ss_pred ceEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHh-cCcC-----
Confidence 4789999999999997 3579999999987 9999999999876 4899999997543 333344433 2210
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHhcCCcEEEEEEecCc
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDE 244 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~aditi~~~~~~~ 244 (521)
...++++.. + .+..++++.++..+++ .+.++++.||. +.+.+ +.++++.+.+.++. +.+.+..+
T Consensus 72 -~~~~~~v~~-----g----~~r~~sv~~gl~~~~~--~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~--~~~~~~~d 137 (230)
T PRK13385 72 -DQRVEVVKG-----G----TERQESVAAGLDRIGN--EDVILVHDGARPFLTQDIIDRLLEGVAKYGAA--ICAVEVKD 137 (230)
T ss_pred -CCceEEcCC-----C----chHHHHHHHHHHhccC--CCeEEEccCCCCCCCHHHHHHHHHHHhhCCcE--EEEEeccc
Confidence 011333311 1 2345899998877753 35688889999 77655 99999988765543 33333221
Q ss_pred ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChh
Q 009971 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (521)
Q Consensus 245 ~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~ 324 (521)
.+... .++.+....+ .... +.--+.+.|+.+.|.+..+.... ...+.
T Consensus 138 ------ti~~~-~~~~~~~~i~---r~~~----------------------~~~qtpq~f~~~~l~~~~~~~~~-~~~~~ 184 (230)
T PRK13385 138 ------TVKRV-KDKQVIETVD---RNEL----------------------WQGQTPQAFELKILQKAHRLASE-QQFLG 184 (230)
T ss_pred ------eEEEE-cCCeeEeccC---HHHH----------------------hhhcCCceeeHHHHHHHHHHHHh-cCCCc
Confidence 11222 2355444322 1111 22234788998888777653221 22334
Q ss_pred hcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcc
Q 009971 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 325 ~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll 364 (521)
+|....+.+.+.+|..++-+...+.|+|++|+..|...+.
T Consensus 185 td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 185 TDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred CcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence 6666666666889999988888999999999999987653
No 70
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.58 E-value=1.8e-13 Score=132.36 Aligned_cols=215 Identities=20% Similarity=0.266 Sum_probs=137.6
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
++.|||||+|.|+||. .|+|+|++|+ |||+|+++.+.+++ +++|+|++ +.+.+.+++.+ +..
T Consensus 1 ~~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~--~~~~i~~~~~~-~~~------- 63 (223)
T cd02513 1 KILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVST--DDEEIAEVARK-YGA------- 63 (223)
T ss_pred CeEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEEC--CcHHHHHHHHH-hCC-------
Confidence 3679999999999995 3999999997 99999999999887 78888876 34556665543 110
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhc--CcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecC
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH--NVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~--~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
. +.+........+ ..|+.++++.++..++.. ..+.++++.||+ +.. .++.++++.+.+.+++.++.+.+..
T Consensus 64 -~-~~~~~~~~~~~~---~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~ 138 (223)
T cd02513 64 -E-VPFLRPAELATD---TASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFH 138 (223)
T ss_pred -C-ceeeCChHHCCC---CCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 0 111111000011 247889999999877531 136899999999 554 5699999999887777767666543
Q ss_pred cccCcceeEEEeCCCC-CeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCC
Q 009971 244 EKRATAFGLMKIDEEG-RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (521)
Q Consensus 244 ~~~~~~~g~v~~d~~g-rV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d 322 (521)
. ...++.. .+++| .++.+.++.... . .+ ....+..++|+|+++++.+.+.. .
T Consensus 139 ~--~~~~~~~-~~~~~~~~~~~~~~~~~~-~--q~-------------~~~~~~~n~~~y~~~~~~~~~~~-------~- 191 (223)
T cd02513 139 R--FPWRALG-LDDNGLEPVNYPEDKRTR-R--QD-------------LPPAYHENGAIYIAKREALLESN-------S- 191 (223)
T ss_pred c--CcHHhee-eccCCceeccCcccccCC-c--CC-------------ChhHeeECCEEEEEEHHHHHhcC-------C-
Confidence 2 2222222 22223 222221111000 0 00 00125788899999998764311 0
Q ss_pred hhhcchHhhhhCCceEEEEEecc-eEEecCCHHHHHHHhhh
Q 009971 323 FGSEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLG 362 (521)
Q Consensus 323 ~~~dil~~li~~~~~I~~~~~~g-~w~dIgt~edy~~An~~ 362 (521)
+ -+.++..+..+. ..+||+|++|+..|...
T Consensus 192 ~----------~g~~~~~~~~~~~~~~dI~~~~D~~~ae~~ 222 (223)
T cd02513 192 F----------FGGKTGPYEMPRERSIDIDTEEDFELAEAL 222 (223)
T ss_pred c----------cCCCeEEEEeCccceeCCCCHHHHHHHHHh
Confidence 1 166888887776 58999999999888653
No 71
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.58 E-value=1.8e-14 Score=132.10 Aligned_cols=121 Identities=25% Similarity=0.356 Sum_probs=94.9
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcE
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (521)
|||||||.|+||+ .||+|+|++|+ |||+|+++.+.+.++++|+|++++ +++.+++.+. + +
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~-----------~-~ 60 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLERY-----------G-I 60 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTT-----------T-S
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHhcc-----------C-c
Confidence 7999999999998 49999999886 999999999999999999999987 4555555431 1 3
Q ss_pred EEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEE
Q 009971 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAAL 240 (521)
Q Consensus 172 ~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~ 240 (521)
+++.. +.|..|++.+++.++..+. ..++|++++||+ +++ ..+..+++.+.+++.++++...
T Consensus 61 ~~v~~------~~~~~G~~~sl~~a~~~~~--~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 61 KVVVD------PEPGQGPLASLLAALSQLP--SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp EEEE-------STSSCSHHHHHHHHHHTST--TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred eEEEe------ccccCChHHHHHHHHHhcc--cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 34322 2234899999999998773 258999999999 445 4599999999888887766554
No 72
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.57 E-value=2.5e-14 Score=134.29 Aligned_cols=124 Identities=20% Similarity=0.224 Sum_probs=96.4
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
|.|||||||+|+||++ .||+|+|++|+ |||+|+++++.++++++|+++++++.+.++.|+.+.+
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 6899999999999985 79999999987 9999999999998999999999988888888887521
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ec-cccHHHHHHHHHhcCCcEEEEEE
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAAL 240 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~aditi~~~ 240 (521)
..+.. . +..|...++..++..+. ..++|++++||+ +. ...+..+++.+...+......+.
T Consensus 65 -~~~~~--~------~g~G~~~~l~~al~~~~--~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~ 126 (183)
T TIGR00454 65 -KDYKN--A------SGKGYIEDLNECIGELY--FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMI 126 (183)
T ss_pred -cEEEe--c------CCCCHHHHHHHHhhccc--CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEe
Confidence 11221 1 12678888888876442 247899999999 33 45699999988776655444443
No 73
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.56 E-value=1.2e-13 Score=129.90 Aligned_cols=119 Identities=18% Similarity=0.312 Sum_probs=89.2
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcE
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 171 (521)
+||||||.|+||+ .||+|+|++|+ |||+|+++.+.+.++++|+|++++..+.+.+++...+ + +
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~~~----------~-v 64 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLANHS----------N-I 64 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhccCC----------C-e
Confidence 7999999999998 58999999986 9999999999998999999999987765544443211 1 3
Q ss_pred EEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcE
Q 009971 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADI 235 (521)
Q Consensus 172 ~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~adi 235 (521)
.++.. +.|..|++++++.++.. . ...+.+++++||+ +++ ..++.+++.+...+.++
T Consensus 65 ~~v~~------~~~~~g~~~si~~~l~~-~-~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 122 (188)
T TIGR03310 65 TLVHN------PQYAEGQSSSIKLGLEL-P-VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI 122 (188)
T ss_pred EEEEC------cChhcCHHHHHHHHhcC-C-CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE
Confidence 33321 12336899999988862 1 1247899999999 554 45889998876655543
No 74
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.54 E-value=5.7e-13 Score=131.15 Aligned_cols=222 Identities=14% Similarity=0.105 Sum_probs=138.6
Q ss_pred CcCCccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHh-CCCceEEEEecCChH-HHHHHHHHhhhcc
Q 009971 84 PEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSA-SLNRHLSRAYASN 161 (521)
Q Consensus 84 ~~~~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~-~gi~~I~Iv~~~~~~-~i~~~l~~~~~~~ 161 (521)
+.+++.+.+||||||.|+||+ ...||+|++++|+ |||+|+++.+.+ .++++|+|++++... .+++.+.+ +..
T Consensus 19 ~~~~~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~-~~~- 92 (252)
T PLN02728 19 VVKEKSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN-IDV- 92 (252)
T ss_pred ccccCceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh-cCC-
Confidence 344567899999999999997 3589999999987 999999999998 489999999986643 33333332 110
Q ss_pred CCCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCC--e-ecccc-HHHHHHHHHhcCCcEEE
Q 009971 162 MGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGD--H-LYRMD-YERFIQAHRETDADITV 237 (521)
Q Consensus 162 ~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD--~-l~~~d-l~~ll~~h~~~~aditi 237 (521)
. +.+.. . + .+..++++.++..++. +..+++.+| . +...+ +..+++...+.++ .+
T Consensus 93 -------~-i~~v~-g----g----~~r~~SV~~gl~~l~~---~~~~VlihDaarP~vs~~~i~~li~~~~~~ga--~i 150 (252)
T PLN02728 93 -------P-LKFAL-P----G----KERQDSVFNGLQEVDA---NSELVCIHDSARPLVTSADIEKVLKDAAVHGA--AV 150 (252)
T ss_pred -------c-eEEcC-C----C----CchHHHHHHHHHhccC---CCCEEEEecCcCCCCCHHHHHHHHHHHhhCCe--EE
Confidence 1 22221 1 1 2356789999877752 234455555 5 66654 8899988776654 34
Q ss_pred EEEecCcccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhC
Q 009971 238 AALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKF 317 (521)
Q Consensus 238 ~~~~~~~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~ 317 (521)
...+..+ .+..+++++.|.. .++.......+ .| -.|+.+.|.+.++...
T Consensus 151 ~~~~~~d------tik~v~~~~~v~~---t~~R~~l~~~Q--------TP--------------Q~F~~~~l~~a~~~~~ 199 (252)
T PLN02728 151 LGVPVKA------TIKEANSDSFVVK---TLDRKRLWEMQ--------TP--------------QVIKPELLRRGFELVE 199 (252)
T ss_pred Eeecchh------hEEEecCCCceee---ccChHHeEEEe--------CC--------------ccchHHHHHHHHHHHH
Confidence 4444322 1222344454433 22222211110 01 1566666665554322
Q ss_pred CCCCChhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhccc
Q 009971 318 PGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (521)
Q Consensus 318 ~~~~d~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~ 365 (521)
.. ..+.+|....+...|.+|..++-+..-+-|.||+|+..|+..+..
T Consensus 200 ~~-~~~~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~~ 246 (252)
T PLN02728 200 RE-GLEVTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILNE 246 (252)
T ss_pred hc-CCCcCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHhh
Confidence 22 222456566666668888887777778999999999999876543
No 75
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.53 E-value=2.7e-14 Score=138.57 Aligned_cols=97 Identities=24% Similarity=0.197 Sum_probs=57.7
Q ss_pred hcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcccCCCCCcc--ccccCCC-cccCCCCcCCCceeecccccce
Q 009971 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFR--YFYDRSA-PIYTQPRYLPPSKMLDADVTDS 401 (521)
Q Consensus 325 ~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll~~~~~~~~--~~~~~~~-~i~~~~~~~~~~~i~~~~i~~~ 401 (521)
.|.++.+++.+ ++.++|||.|+ ++|+++|+.++........ ....+.. .+...+.+.+.+.+. .++
T Consensus 31 ~~~~~~~~~~~----~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~----g~v 99 (231)
T TIGR03532 31 PESIKKFGSGH----SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIR----DQV 99 (231)
T ss_pred chheEEEecCC----cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEe----CCe
Confidence 68888888744 88899999999 9999999999976531100 0001111 012223333333321 345
Q ss_pred EECCCcEEce-eEEe-eeEECCCCEECCCCEEc
Q 009971 402 VIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE 432 (521)
Q Consensus 402 ~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~ 432 (521)
.||++|.|+. +.|. +++||++|.|++++.|.
T Consensus 100 ~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~ 132 (231)
T TIGR03532 100 IIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLG 132 (231)
T ss_pred EECCCCEEecCcccCCCeEECCCCEEccccccC
Confidence 5666666665 5554 46666666666666664
No 76
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.52 E-value=1.3e-13 Score=127.21 Aligned_cols=123 Identities=15% Similarity=0.257 Sum_probs=93.4
Q ss_pred CcccCCCCcCCCceee-cccc-cceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccC
Q 009971 379 APIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAK 454 (521)
Q Consensus 379 ~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~ 454 (521)
+.+...+.+.+.+.+. ++.+ .+++||++|.|++ |.|. +++||++|.|++++.|.+++++.+
T Consensus 12 ~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~--------------- 76 (163)
T cd05636 12 VTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDG--------------- 76 (163)
T ss_pred CEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCC---------------
Confidence 3333334444444443 3333 3588999999987 8887 799999999999999999988876
Q ss_pred CCcceeeCCCCEEeeeEECCCCEECCCcEEeCC------------------------CccCCceeecCCeEEcCCeEEEC
Q 009971 455 GSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNS------------------------DSVQEAARETDGYFIKSGIVTII 510 (521)
Q Consensus 455 ~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~------------------------~~~~~~~~~~~~~~I~~g~v~I~ 510 (521)
+.|++++++.+++|++++.|++++.+.+. ..+++.+.++.++.|..+ ++|+
T Consensus 77 ----~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g-~~ig 151 (163)
T cd05636 77 ----TKVPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPG-VKIG 151 (163)
T ss_pred ----CEeccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCC-cEEC
Confidence 58999999999999999999999998652 334555556666666666 7889
Q ss_pred CCCEECCCccC
Q 009971 511 KDALIPSGTII 521 (521)
Q Consensus 511 ~~~~i~~gsvi 521 (521)
++++|++|++|
T Consensus 152 ~~~~i~agsvV 162 (163)
T cd05636 152 PGSWVYPGCVV 162 (163)
T ss_pred CCCEECCCcEe
Confidence 99999999875
No 77
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.49 E-value=2.4e-12 Score=119.50 Aligned_cols=192 Identities=21% Similarity=0.296 Sum_probs=132.0
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHH-HHHHHHhhhccCCCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASL-NRHLSRAYASNMGGY 165 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i-~~~l~~~~~~~~~~~ 165 (521)
+.++-+||||||.|+||+ .+|-|+|+.|+ ||+.++++...+++++++++|+++..... ......
T Consensus 3 ~~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~~--------- 67 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAVEALLAQ--------- 67 (199)
T ss_pred CcceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhcc---------
Confidence 356899999999999999 89999999997 99999999999999999999999873222 222221
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe--eccccHHHHHHHHHhcCCcEEEEEEecC
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
..+.++ .+++|.+|.+.+++.++..+.... +-++++.||+ +...++..+++.++.++ . ...+
T Consensus 68 ---~~~~~v------~npd~~~Gls~Sl~ag~~a~~~~~-~~v~~~lgDmP~V~~~t~~rl~~~~~~~~-~---~v~p-- 131 (199)
T COG2068 68 ---LGVTVV------VNPDYAQGLSTSLKAGLRAADAEG-DGVVLMLGDMPQVTPATVRRLIAAFRARG-A---AVRP-- 131 (199)
T ss_pred ---CCeEEE------eCcchhhhHhHHHHHHHHhcccCC-CeEEEEeCCCCCCCHHHHHHHHHhccccC-c---eeee--
Confidence 113343 355677999999999998886432 5899999999 55577999999887663 2 1111
Q ss_pred cccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCCh
Q 009971 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (521)
Q Consensus 244 ~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~ 323 (521)
.| .| +...+ .+|+++.|..+.+ .+ .|
T Consensus 132 -----~~-------~g-------~rG~P------------------------------v~~~~~~~~~l~~--l~--GD- 157 (199)
T COG2068 132 -----VY-------GG-------ARGHP------------------------------VLLSKDLFPALAR--LS--GD- 157 (199)
T ss_pred -----ec-------cC-------CcCCc------------------------------eeechhHHHHHhh--cC--Cc-
Confidence 01 00 11111 1567777764443 11 22
Q ss_pred hhcchHhhhhCCceEEEEEe-cceEEecCCHHHHHHHhhhcc
Q 009971 324 GSEVIPGATSIGMRVQAYLY-DGYWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~-~g~w~dIgt~edy~~An~~ll 364 (521)
+..-..+.+.+..+..++. .+.-.|||||+||..++..+.
T Consensus 158 -~G~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~~ 198 (199)
T COG2068 158 -VGARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLLR 198 (199)
T ss_pred -hhHHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhhc
Confidence 1222233333555566665 678999999999999987654
No 78
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.48 E-value=1.4e-12 Score=123.48 Aligned_cols=115 Identities=22% Similarity=0.253 Sum_probs=83.9
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
|++|.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+. .++++|+|+++...+.+ .. +
T Consensus 1 ~~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~~-~-------- 61 (193)
T PRK00317 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLARY----AA-F-------- 61 (193)
T ss_pred CCCceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHHH----Hh-c--------
Confidence 467999999999999995 379999999986 99999999998 67999999987543322 11 0
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHhc
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRET 231 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~ 231 (521)
+ +.++.... .+..|+.++++.++...+ .+.+++++||+ +.+.+ +..+++.+.+.
T Consensus 62 --~-~~~v~~~~-----~~~~g~~~~i~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 117 (193)
T PRK00317 62 --G-LPVIPDSL-----ADFPGPLAGILAGLKQAR---TEWVLVVPCDTPFIPPDLVARLAQAAGKD 117 (193)
T ss_pred --C-CcEEeCCC-----CCCCCCHHHHHHHHHhcC---CCeEEEEcCCcCCCCHHHHHHHHHhhhcC
Confidence 0 12222111 112688899998887543 47899999999 66644 88888765433
No 79
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.48 E-value=2.3e-13 Score=134.98 Aligned_cols=140 Identities=21% Similarity=0.245 Sum_probs=88.7
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcc------------eEEECC
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED------------TLLMGA 439 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~------------s~i~~~ 439 (521)
++++.+.|..++.+.|.+.+. .++.||++|.|+. +.|. +++||++|.|++++.|+. .+.+++
T Consensus 10 ~I~~~a~Ig~~v~Igp~~~I~----~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~ 85 (262)
T PRK05289 10 IVEPGAKIGENVEIGPFCVIG----PNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGD 85 (262)
T ss_pred EECCCCEECCCCEECCCeEEC----CCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECC
Confidence 445555555555555555442 4577778887776 6666 678888888888877764 233332
Q ss_pred c-cccccccccccccCCC----cceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EE
Q 009971 440 D-YYETDADRRFLAAKGS----VPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VT 508 (521)
Q Consensus 440 ~-~~e~~~~~~~~~~~~~----~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~ 508 (521)
+ ... ..+.|.++. -.+.||+++.|. ++.|+++|.||+++++.+...+.+..+++++++|+.+. ++
T Consensus 86 ~~~I~----e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~ 161 (262)
T PRK05289 86 NNTIR----EFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVR 161 (262)
T ss_pred CCEEC----CCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCE
Confidence 1 111 111121111 014677777775 67777777777777777777777777777777777663 67
Q ss_pred ECCCCEECCCccC
Q 009971 509 IIKDALIPSGTII 521 (521)
Q Consensus 509 I~~~~~i~~gsvi 521 (521)
||++++|++||+|
T Consensus 162 Ig~~~~Ig~gs~V 174 (262)
T PRK05289 162 IGAHAMVGGMSGV 174 (262)
T ss_pred ECCCCEEeeecce
Confidence 8889999988875
No 80
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.48 E-value=4.4e-13 Score=127.08 Aligned_cols=142 Identities=22% Similarity=0.220 Sum_probs=89.3
Q ss_pred cCCCcccCCCCcCCCceee-cccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEEC-Ccccccccc-cccc
Q 009971 376 DRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMG-ADYYETDAD-RRFL 451 (521)
Q Consensus 376 ~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~-~~~~e~~~~-~~~~ 451 (521)
++.+.+...+.+.+.+.+. ++.+.++.|+++|.|+. +.+.+++|++++.|+++++|....+++ +........ .++.
T Consensus 25 ~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ 104 (193)
T cd03353 25 DPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKST 104 (193)
T ss_pred CCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecce
Confidence 3333333334444444443 45556667778888876 777777777777777777776333333 221111111 3455
Q ss_pred ccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCcc-------CCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 452 AAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSV-------QEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 452 ~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~-------~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+++++ .|++.+++.+++|++++.||+++.+.+.++. +++++++.++.|..+ ++|+++++|++|++|
T Consensus 105 ig~~~---~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~-~~Ig~~~~i~~gs~V 177 (193)
T cd03353 105 IGEGS---KANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAP-VTIGDGATIAAGSTI 177 (193)
T ss_pred EcCCC---EecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCC-cEECCCcEECCCCEE
Confidence 66666 6777777788999999999999988775543 334444444444445 789999999999875
No 81
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.48 E-value=3.9e-13 Score=132.96 Aligned_cols=140 Identities=21% Similarity=0.236 Sum_probs=80.7
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcc------------eEEECC
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED------------TLLMGA 439 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~------------s~i~~~ 439 (521)
++++.+.+..++.+.|.+.+. .++.||++|.|+. |.|. ++.||++|.|+++++|.. .+.+++
T Consensus 7 ~I~~~a~ig~~~~I~p~~~I~----~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~ 82 (254)
T cd03351 7 IVDPGAKIGENVEIGPFCVIG----PNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGD 82 (254)
T ss_pred EECCCCEECCCCEECCCcEEC----CCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECC
Confidence 445555555555555554442 3455566666655 5555 466666666666666642 222222
Q ss_pred -ccccccccccccccCCC----cceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EE
Q 009971 440 -DYYETDADRRFLAAKGS----VPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VT 508 (521)
Q Consensus 440 -~~~e~~~~~~~~~~~~~----~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~ 508 (521)
+... ..+.|..+. -.+.||+++.|. ++.|++++.||++|.|.+...+...++++++++|+.+. ++
T Consensus 83 ~~~Ig----~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~ 158 (254)
T cd03351 83 NNTIR----EFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCR 158 (254)
T ss_pred CCEEC----CccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcE
Confidence 1111 111111110 015677777775 67777777777777777777777777777777776652 77
Q ss_pred ECCCCEECCCccC
Q 009971 509 IIKDALIPSGTII 521 (521)
Q Consensus 509 I~~~~~i~~gsvi 521 (521)
||++++|++|++|
T Consensus 159 Ig~~~~Ig~~s~V 171 (254)
T cd03351 159 IGRHAMVGGGSGV 171 (254)
T ss_pred ECCCCEECcCCEE
Confidence 8888888888764
No 82
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.47 E-value=8.7e-13 Score=130.93 Aligned_cols=116 Identities=25% Similarity=0.352 Sum_probs=77.0
Q ss_pred ceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcc-------------------eEEECCccccccccccccccCCCc-
Q 009971 400 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED-------------------TLLMGADYYETDADRRFLAAKGSV- 457 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~-------------------s~i~~~~~~e~~~~~~~~~~~~~~- 457 (521)
++.||++|+|.. ++|. ++.||++|.|++|++|+. .+++++ -+|. +.++.|++++.
T Consensus 147 ~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd-~VeI--GanT~Idrga~~ 223 (338)
T COG1044 147 NVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGD-DVEI--GANTTIDRGALD 223 (338)
T ss_pred CcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceeceEEECC-ceEE--cccceecccccc
Confidence 344444444444 4455 366666666666666542 122221 1222 25777888743
Q ss_pred ceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCc
Q 009971 458 PIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGT 519 (521)
Q Consensus 458 ~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gs 519 (521)
.+.||++++|. .+.|++||+||++|.|.+.+++.+..++|++|.|+.. |.|..+..|++++
T Consensus 224 dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~-vgI~gh~~IgD~~ 285 (338)
T COG1044 224 DTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQ-VGIAGHLEIGDGV 285 (338)
T ss_pred CceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcc-eeecCceEEcCCC
Confidence 45789999998 5899999999999999999999999999999999888 5544444444444
No 83
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.47 E-value=5e-13 Score=125.08 Aligned_cols=120 Identities=23% Similarity=0.379 Sum_probs=90.7
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
+.+||||||.|+||++ ||+|+|++|+ |||+|+++.+.+.++++|+|++++....+.+++.. + +
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~-~----------~ 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG-L----------P 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC-C----------C
Confidence 4689999999999985 9999999986 99999999999999999999998876655444332 0 1
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCc
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDAD 234 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad 234 (521)
+.++.. +.+..|++++++.++..+.. ..+.+++++||+ +.+ ..+..+++.+...+++
T Consensus 64 -~~~~~~------~~~~~G~~~~i~~al~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 122 (186)
T cd04182 64 -VVVVIN------PDWEEGMSSSLAAGLEALPA-DADAVLILLADQPLVTAETLRALIDAFREDGAG 122 (186)
T ss_pred -eEEEeC------CChhhCHHHHHHHHHHhccc-cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCe
Confidence 222221 11237899999999987752 247899999999 555 4588888887654444
No 84
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.47 E-value=8.8e-13 Score=134.51 Aligned_cols=63 Identities=22% Similarity=0.298 Sum_probs=50.1
Q ss_pred eeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 459 IGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 459 ~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
+.||+++.|. .+.|++||+||+++.|.+..++....++|++++|+.+. ++||++++|+++|+|
T Consensus 218 t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V 286 (324)
T TIGR01853 218 TIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGV 286 (324)
T ss_pred ceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEe
Confidence 3456666665 57888899999999998888888888888888887663 778888888888865
No 85
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.46 E-value=6.3e-13 Score=130.99 Aligned_cols=140 Identities=22% Similarity=0.286 Sum_probs=93.3
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcc------------eEEECC
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED------------TLLMGA 439 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~------------s~i~~~ 439 (521)
++++.+.|...+.+.|.+.+. .++.||++|.|+. +.|. ++.||+++.|++++.|+. .+.+|+
T Consensus 7 ~I~~~a~Ig~~v~Igp~~~I~----~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~ 82 (255)
T PRK12461 7 VIDPSAKLGSGVEIGPFAVIG----ANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGD 82 (255)
T ss_pred EECCCCEECCCCEECCCCEEC----CCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECC
Confidence 455555565555565555542 4577777777775 6666 677777777777777753 233332
Q ss_pred c-cccccccccccccCCC---cceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EEE
Q 009971 440 D-YYETDADRRFLAAKGS---VPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTI 509 (521)
Q Consensus 440 ~-~~e~~~~~~~~~~~~~---~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~I 509 (521)
+ ... ..+.|..+. -.+.||+++.|. ++.|+++|.||++|+|.+...+...++++++++|+.+. ++|
T Consensus 83 ~~~I~----e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~I 158 (255)
T PRK12461 83 RNVIR----EGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRI 158 (255)
T ss_pred ceEEC----CccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEE
Confidence 1 110 111111110 025778888876 78899999999999999988888888999999988883 567
Q ss_pred CCCCEECCCccC
Q 009971 510 IKDALIPSGTII 521 (521)
Q Consensus 510 ~~~~~i~~gsvi 521 (521)
|++++|++||+|
T Consensus 159 G~~a~Vg~gs~V 170 (255)
T PRK12461 159 GALAMMAGGSRI 170 (255)
T ss_pred CCCcEECCCceE
Confidence 778888877764
No 86
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.46 E-value=5.9e-12 Score=117.65 Aligned_cols=235 Identities=17% Similarity=0.201 Sum_probs=167.2
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
++..+||+|-=.+|||.. |||-.|+|+ |||.|+.++..++|.++++|.| +++.+.+.+.+. +
T Consensus 2 ~~~~viIPAR~~STRLpg------KPLadI~Gk-pmI~rV~e~a~~s~~~rvvVAT--Dde~I~~av~~~---------G 63 (247)
T COG1212 2 MKFVVIIPARLASTRLPG------KPLADIGGK-PMIVRVAERALKSGADRVVVAT--DDERIAEAVQAF---------G 63 (247)
T ss_pred CceEEEEecchhcccCCC------CchhhhCCc-hHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHh---------C
Confidence 567899999988999974 999999997 9999999999999999999999 567888888761 1
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
+.+ ++.. .+...|| +-+..+...+.-...+-++=+.||. +.+ ..+.++++...+.++++..++.+..++
T Consensus 64 -~~a-vmT~------~~h~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ 134 (247)
T COG1212 64 -GEA-VMTS------KDHQSGT-DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDE 134 (247)
T ss_pred -CEE-EecC------CCCCCcc-HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCH
Confidence 111 2211 1123677 7777777666433456777889999 655 458889888888888876666665432
Q ss_pred c---CcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCC
Q 009971 246 R---ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (521)
Q Consensus 246 ~---~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d 322 (521)
. ..+--.++.|.+|+-+.|...|-+...++ . -..+++.-.|||.|++.+|.++........+.
T Consensus 135 ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-~-------------~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~ 200 (247)
T COG1212 135 EEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-F-------------GGTPFLRHIGIYAYRAGFLERFVALKPSPLEK 200 (247)
T ss_pred HHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-c-------------CCcchhheeehHHhHHHHHHHHHhcCCchhHH
Confidence 1 12333456788899999997766443221 0 00256888999999999998887643221111
Q ss_pred hhhcchHh--hhhCCceEEEEEecceE-EecCCHHHHHHHhhhccc
Q 009971 323 FGSEVIPG--ATSIGMRVQAYLYDGYW-EDIGTIEAFYNANLGITK 365 (521)
Q Consensus 323 ~~~dil~~--li~~~~~I~~~~~~g~w-~dIgt~edy~~An~~ll~ 365 (521)
.+-|.+ +++.|++|.+...+..- ..+||++||..+.+.+..
T Consensus 201 --~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 201 --IESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred --HHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 233433 35669999999998654 999999999999877643
No 87
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.45 E-value=9.5e-12 Score=120.54 Aligned_cols=214 Identities=17% Similarity=0.193 Sum_probs=141.6
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCChHHHHHHHHHhhhccCCCCcCCCc
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGF 170 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 170 (521)
|||||+|.++||. .|.+.|++|+ |||.|+++.+.+++ +++|+|.+ +.+.+.+...+ +.. .
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVst--d~~~i~~~a~~-~g~---------~ 62 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVST--DDEEIAEVAKS-YGA---------S 62 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeC--CCHHHHHHHHH-cCC---------E
Confidence 7999999999995 4999999987 99999999999987 68887766 34556555443 211 0
Q ss_pred EEEeecccCCCCCCCCCChHHHHHHHHHHhhh-cCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEEEEEEecCcccC
Q 009971 171 VEVLAAQQSPENPNWFQGTADAVRQYLWLFEE-HNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDEKRA 247 (521)
Q Consensus 171 v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~-~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (521)
+.+...... ..+..|+.+++.+++..++. ...+.++++.+|. +.+ .++..+++.+.+.+++..+.+.+.... +
T Consensus 63 v~~~r~~~l---~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~-~ 138 (222)
T TIGR03584 63 VPFLRPKEL---ADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFP-I 138 (222)
T ss_pred eEEeChHHH---cCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCC-h
Confidence 111111110 11136888999999987753 2246799999999 555 569999999988778877777664321 1
Q ss_pred cceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhcc
Q 009971 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEV 327 (521)
Q Consensus 248 ~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~di 327 (521)
.+. ...+++|++..+....... .... ....+..+.++|+++++.+.+ . ..+.
T Consensus 139 -~~~-~~~~~~g~~~~~~~~~~~~--~rQd-------------~~~~y~~nga~y~~~~~~~~~--~------~~~~--- 190 (222)
T TIGR03584 139 -QRA-FKLKENGGVEMFFPEHFNT--RSQD-------------LEEAYHDAGQFYWGKSQAWLE--S------GPIF--- 190 (222)
T ss_pred -HHh-eEECCCCcEEecCCCcccC--CCCC-------------CchheeeCCeEEEEEHHHHHh--c------CCcc---
Confidence 122 2344567766655221110 0000 012367899999999987642 1 1111
Q ss_pred hHhhhhCCceEEEEEecc-eEEecCCHHHHHHHhhhc
Q 009971 328 IPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 328 l~~li~~~~~I~~~~~~g-~w~dIgt~edy~~An~~l 363 (521)
+.++..|.++. ..+||+|++|+..|...+
T Consensus 191 -------~~~~~~~~m~~~~~iDID~~~D~~~ae~l~ 220 (222)
T TIGR03584 191 -------SPHSIPIVLPRHLVQDIDTLEDWERAELLY 220 (222)
T ss_pred -------CCCcEEEEeCccceeCCCCHHHHHHHHHHH
Confidence 45778888875 489999999999987643
No 88
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.43 E-value=6.1e-12 Score=119.98 Aligned_cols=116 Identities=22% Similarity=0.290 Sum_probs=84.9
Q ss_pred cCCccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCC
Q 009971 85 EASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG 164 (521)
Q Consensus 85 ~~~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~ 164 (521)
++.+++.+||||||.|+||+ .+|+|++++|+ |||+|+++.+... +++|+|++++. +........
T Consensus 3 ~~~~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~ivvv~~~~-~~~~~~~~~-------- 66 (200)
T PRK02726 3 TVKNNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAAC-ADEVYIITPWP-ERYQSLLPP-------- 66 (200)
T ss_pred CcCCCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHhh-CCEEEEECCCH-HHHHhhccC--------
Confidence 34567999999999999997 48999999986 9999999999864 78999988632 222111110
Q ss_pred CcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHh
Q 009971 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRE 230 (521)
Q Consensus 165 ~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~ 230 (521)
+ +.++.. +.|..|..++++.++..++ .+.+++++||+ +...+ +..+++.+..
T Consensus 67 ----~-~~~i~~------~~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 67 ----G-CHWLRE------PPPSQGPLVAFAQGLPQIK---TEWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred ----C-CeEecC------CCCCCChHHHHHHHHHhCC---CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 1 233321 2234799999999998775 37899999999 66654 8888887643
No 89
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.42 E-value=1.6e-12 Score=110.64 Aligned_cols=98 Identities=35% Similarity=0.581 Sum_probs=85.8
Q ss_pred cccccceEECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECC
Q 009971 395 DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDK 474 (521)
Q Consensus 395 ~~~i~~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~ 474 (521)
++.+++++||++|.|+++.|.+|+|++++.|+++|+|.+++++++ +.||+++.+.+++|++
T Consensus 7 ~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~-------------------~~Ig~~~~i~~siig~ 67 (104)
T cd04651 7 RGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN-------------------VGIGRNAVIRRAIIDK 67 (104)
T ss_pred CCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC-------------------CEECCCCEEEeEEECC
Confidence 455778999999999988899999999999999999999999887 6899999999999999
Q ss_pred CCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEE
Q 009971 475 NARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALI 515 (521)
Q Consensus 475 ~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i 515 (521)
++.||+++++.+.....+ .++++..+++++|++++.+
T Consensus 68 ~~~Ig~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 104 (104)
T cd04651 68 NVVIPDGVVIGGDPEEDR----ARFYVTEDGIVVVGKGMVI 104 (104)
T ss_pred CCEECCCCEECCCccccc----ccceEcCCeEEEEecccCC
Confidence 999999999987644433 2688889998999988753
No 90
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.42 E-value=2.1e-12 Score=127.75 Aligned_cols=63 Identities=21% Similarity=0.257 Sum_probs=42.1
Q ss_pred eeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 459 IGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 459 ~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
+.||++++|. ++.|+++|.||++++|.+...+...++++++++|+.+. ++|+++++|+++++|
T Consensus 102 ~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V 170 (254)
T TIGR01852 102 TRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAV 170 (254)
T ss_pred EEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeeeeeE
Confidence 5667777764 56666666666666666666666666666666666552 778888888888764
No 91
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.40 E-value=4.6e-12 Score=130.80 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=49.4
Q ss_pred eeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EEECCCCEECCCccC
Q 009971 459 IGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTII 521 (521)
Q Consensus 459 ~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~I~~~~~i~~gsvi 521 (521)
+.||+++.|. .+.|++||+||+++.|....++...+++|++++|+.+. ++||++++|+++++|
T Consensus 226 t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v 294 (343)
T PRK00892 226 TVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGV 294 (343)
T ss_pred ceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCee
Confidence 4677777776 57788888888888888888888888888888888773 667888888887764
No 92
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.39 E-value=4.7e-12 Score=119.15 Aligned_cols=142 Identities=23% Similarity=0.261 Sum_probs=103.3
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcc------------eEEECC
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED------------TLLMGA 439 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~------------s~i~~~ 439 (521)
.+++.+.|..++.++|.|.++ .++.|++|++|++ ++|. ++.||.+++|.+.+.|+. .++.|+
T Consensus 11 iIe~gA~ig~~V~IGpf~iIg----~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~ 86 (260)
T COG1043 11 IIEPGAEIGEDVKIGPFCIIG----PNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGD 86 (260)
T ss_pred eeCCCCCcCCCCEECceEEEC----CCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECC
Confidence 455555566666666655542 4688899999987 7777 788998887777666642 222222
Q ss_pred ccc--ccccc-ccccccCCCcceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EEEC
Q 009971 440 DYY--ETDAD-RRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTII 510 (521)
Q Consensus 440 ~~~--e~~~~-~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~I~ 510 (521)
+-- |...- +.+.-|.+. +.||+++-+. ++.|.++|+||.+|++.|...+..+..++|.++|+... |.||
T Consensus 87 ~n~IRE~vTi~~GT~~g~g~--T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG 164 (260)
T COG1043 87 NNTIREFVTIHRGTVQGGGV--TRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIG 164 (260)
T ss_pred CCeEeeEEEEeccccCCcee--EEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEc
Confidence 111 11111 334444555 7899999987 99999999999999999999999999999999998774 7899
Q ss_pred CCCEECCCccC
Q 009971 511 KDALIPSGTII 521 (521)
Q Consensus 511 ~~~~i~~gsvi 521 (521)
++|+||..|-|
T Consensus 165 ~~amiGg~S~v 175 (260)
T COG1043 165 AHAMIGGLSAV 175 (260)
T ss_pred chheecccccc
Confidence 99999988754
No 93
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.39 E-value=5.1e-11 Score=114.29 Aligned_cols=222 Identities=18% Similarity=0.197 Sum_probs=144.0
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCCh-HHHHHHHHHhhhccCCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNS-ASLNRHLSRAYASNMGG 164 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~ 164 (521)
++++.+||||||.|+||+. ..||.+++++|+ |||+|+++.|..+. |++|+|+++... ..+.++... .
T Consensus 2 ~~~~~~vilAaG~G~R~~~---~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~--~----- 70 (230)
T COG1211 2 RMMVSAVILAAGFGSRMGN---PVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKL--S----- 70 (230)
T ss_pred CceEEEEEEcCccccccCC---CCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhh--c-----
Confidence 4578999999999999994 899999999986 99999999998754 899999997633 344444421 0
Q ss_pred CcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-eccc-cHHHHHHHHHhcCCcEEEEEEec
Q 009971 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPM 242 (521)
Q Consensus 165 ~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~aditi~~~~~ 242 (521)
....++++... ..-.++++.++..++++..+.||+..+=- +... .+.++++..... ...+.+.|+
T Consensus 71 --~~~~v~~v~GG---------~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~~~--~aai~alpv 137 (230)
T COG1211 71 --ADKRVEVVKGG---------ATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELADKY--GAAILALPV 137 (230)
T ss_pred --cCCeEEEecCC---------ccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhccC--CcEEEEeec
Confidence 11224444322 23568999999888754567888887776 5554 488888444333 344555554
Q ss_pred CcccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCC
Q 009971 243 DEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (521)
Q Consensus 243 ~~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d 322 (521)
.+ .+...+.++.+.+......-.... .|+ .|+.+.|.+.+...+....+
T Consensus 138 ~D------Tik~~~~~~~i~~t~~R~~l~~~Q-----------TPQ--------------~F~~~~L~~a~~~a~~~~~~ 186 (230)
T COG1211 138 TD------TLKRVDADGNIVETVDRSGLWAAQ-----------TPQ--------------AFRLELLKQALARAFAEGRE 186 (230)
T ss_pred cC------cEEEecCCCCeeeccChhhhhhhh-----------CCc--------------cccHHHHHHHHHHHHhcCCC
Confidence 32 233444566676654332211110 011 56666776666543332222
Q ss_pred hhhcchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhcc
Q 009971 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (521)
Q Consensus 323 ~~~dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~ll 364 (521)
+ +|--..+...|.++..+.-+-+-+.|.||+|+..|+..+.
T Consensus 187 ~-tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~ 227 (230)
T COG1211 187 I-TDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILR 227 (230)
T ss_pred c-CCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhc
Confidence 3 3333334444788888888878899999999999987654
No 94
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.38 E-value=2.6e-11 Score=116.76 Aligned_cols=215 Identities=20% Similarity=0.223 Sum_probs=131.9
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhC-CCceEEEEecCCh-HHHHHHHHHhhhccCCCCcC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~-~~i~~~l~~~~~~~~~~~~~ 167 (521)
+.|||||||.|+||+ ...||.+++++|+ |+|.|+++.|.+. .+++|+|++.... +.+++.+.+ .
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~-~--------- 66 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK-K--------- 66 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH-T---------
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC-C---------
Confidence 468999999999998 4789999999997 9999999999884 5899999997665 444444444 1
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHhcCCcEEEEEEecCcc
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEK 245 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~aditi~~~~~~~~ 245 (521)
.+.++... ..-.+++++++..+++. .+.+|+..|=- +...+ +.++++..++. .+..+...+..+
T Consensus 67 --~v~iv~GG---------~tR~~SV~ngL~~l~~~-~d~VlIHDaaRPfv~~~~i~~~i~~~~~~-~~aai~~~p~~D- 132 (221)
T PF01128_consen 67 --KVKIVEGG---------ATRQESVYNGLKALAED-CDIVLIHDAARPFVSPELIDRVIEAAREG-HGAAIPALPVTD- 132 (221)
T ss_dssp --TEEEEE-----------SSHHHHHHHHHHCHHCT-SSEEEEEETTSTT--HHHHHHHHHHHHHT-CSEEEEEEE-SS-
T ss_pred --CEEEecCC---------hhHHHHHHHHHHHHHcC-CCEEEEEccccCCCCHHHHHHHHHHHHhh-cCcEEEEEeccc-
Confidence 14444322 22558999999888753 36788877776 66544 88888887652 333455555332
Q ss_pred cCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhh
Q 009971 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGS 325 (521)
Q Consensus 246 ~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~ 325 (521)
.+...+++|.+.+...... . +.-=-=-.|..+.+.+..+....... ..+
T Consensus 133 -----Tik~v~~~~~v~~tldR~~---l----------------------~~~QTPQ~F~~~~l~~a~~~a~~~~~-~~t 181 (221)
T PF01128_consen 133 -----TIKRVDDDGFVTETLDRSK---L----------------------WAVQTPQAFRFELLLEAYEKADEEGF-EFT 181 (221)
T ss_dssp -----EEEEESTTSBEEEEETGGG---E----------------------EEEEEEEEEEHHHHHHHHHTHHHHTH-HHS
T ss_pred -----cEEEEecCCcccccCCHHH---e----------------------eeecCCCeecHHHHHHHHHHHHhcCC-Ccc
Confidence 2334565677766543211 1 11111126777777766654311111 224
Q ss_pred cchHhhhhCCceEEEEEecceEEecCCHHHHHHHhhhc
Q 009971 326 EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (521)
Q Consensus 326 dil~~li~~~~~I~~~~~~g~w~dIgt~edy~~An~~l 363 (521)
|--..+...|.+++.++-+..-+-|.+|+|+..|+..+
T Consensus 182 Ddasl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 182 DDASLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp SHHHHHHHTTS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 44444555588999888887789999999999988654
No 95
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.37 E-value=7.1e-12 Score=113.20 Aligned_cols=110 Identities=23% Similarity=0.307 Sum_probs=89.3
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
|.+||+|||+|+||+ ..-|||++++|+ |||+|+++.+.+ .+++|++++..+...+++|+...
T Consensus 1 m~~iiMAGGrGtRmg----~~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~------------ 62 (177)
T COG2266 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESV------------ 62 (177)
T ss_pred CceEEecCCcccccC----CCcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhc------------
Confidence 579999999999999 356999999997 999999999999 68999999999999999999873
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-eccc-cHHHHHHHHH
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHR 229 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~ 229 (521)
.++++.... .|.-.-++.++..+. .++|++++|+ +.+. .+..+++.+.
T Consensus 63 gv~vi~tpG--------~GYv~Dl~~al~~l~----~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 63 GVKVIETPG--------EGYVEDLRFALESLG----TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred CceEEEcCC--------CChHHHHHHHHHhcC----CceEEEecccccCCHHHHHHHHHHHh
Confidence 155654322 456667777776664 4999999999 5554 4788888775
No 96
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.34 E-value=1.6e-11 Score=116.05 Aligned_cols=125 Identities=22% Similarity=0.295 Sum_probs=88.4
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCc
Q 009971 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGF 170 (521)
Q Consensus 91 ~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 170 (521)
.+||||||.|+||+ .+|.|++++|+ |||+|+++.+.+.++++++|++++..+.+. .+.+... . ..+
T Consensus 2 ~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~-~~~~~~~-~-----~~~- 67 (190)
T TIGR03202 2 VAIYLAAGQSRRMG-----ENKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHLS-WLDPYLL-A-----DER- 67 (190)
T ss_pred eEEEEcCCccccCC-----CCceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchhh-hhhHhhh-c-----CCC-
Confidence 58999999999998 48999999986 999999998888889999999987654321 1111000 0 001
Q ss_pred EEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHhcCCcE
Q 009971 171 VEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADI 235 (521)
Q Consensus 171 v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~adi 235 (521)
+.++. .++|..|.+.+++.++..+.....+.+++++||+ +++.+ +..+++...+...++
T Consensus 68 ~~~~~------~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~~ 128 (190)
T TIGR03202 68 IMLVC------CRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRPDDY 128 (190)
T ss_pred eEEEE------CCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCCE
Confidence 23321 2234468899999999876433357899999999 66655 888888765544443
No 97
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.33 E-value=8.4e-12 Score=116.75 Aligned_cols=113 Identities=23% Similarity=0.266 Sum_probs=84.9
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
+.+||||||.|+||++ ||+|+|++|+ |||+|+++.+... +++|+|++++.... + .. + +
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~---~-~~-~----------~ 58 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQER---Y-AL-L----------G 58 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHH---H-hh-c----------C
Confidence 4689999999999983 9999999986 9999999999988 89999999877544 1 11 1 1
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-eccc-cHHHHHHHHHhcCCcE
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADI 235 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~adi 235 (521)
+.++.. +.|..|+.++++.++..++ .+.+++++||+ +.+. .+..+++.+ ..+.++
T Consensus 59 -~~~v~~------~~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~ 115 (181)
T cd02503 59 -VPVIPD------EPPGKGPLAGILAALRAAP---ADWVLVLACDMPFLPPELLERLLAAA-EEGADA 115 (181)
T ss_pred -CcEeeC------CCCCCCCHHHHHHHHHhcC---CCeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCE
Confidence 223321 1234799999999987764 47899999999 5554 488888776 334443
No 98
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.33 E-value=3.7e-11 Score=114.18 Aligned_cols=106 Identities=17% Similarity=0.331 Sum_probs=75.8
Q ss_pred cCCccEEEEEEeCCCCCCCCccccCCCccceecCC-CcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCC
Q 009971 85 EASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA-NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMG 163 (521)
Q Consensus 85 ~~~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G-~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~ 163 (521)
.|++++.+||||||.|+||+ .+|+|+|++| + |||+|+++++... +++|+|++++ +.. . .
T Consensus 4 ~~~~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~--~~~----~----~--- 63 (196)
T PRK00560 4 PMIDNIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKD--KKF----E----F--- 63 (196)
T ss_pred ccccCceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECc--hhc----c----c---
Confidence 45668999999999999997 6999999998 7 9999999999877 8999999874 111 0 0
Q ss_pred CCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHH
Q 009971 164 GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERF 224 (521)
Q Consensus 164 ~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~l 224 (521)
. ++++..... . ..|...++..++...+ .+.+++++||+ +.+.+ +.++
T Consensus 64 ---~---~~~v~d~~~--~---~~gpl~gi~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 64 ---N---APFLLEKES--D---LFSPLFGIINAFLTLQ---TPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred ---C---CcEEecCCC--C---CCCcHHHHHHHHHhcC---CCeEEEEecCcCcCCHHHHHHH
Confidence 0 123322111 1 2566667776654333 47899999999 66655 5555
No 99
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.32 E-value=1.4e-11 Score=116.29 Aligned_cols=117 Identities=13% Similarity=0.300 Sum_probs=82.0
Q ss_pred CcccCCCCcCCCceeecccccceEECCCcEEce-eEEe----eeEECCCCEECCCCEEcceEEECCcccccccccccccc
Q 009971 379 APIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAA 453 (521)
Q Consensus 379 ~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~----~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~ 453 (521)
..|..++.+.|.+.+ +.++.||++|.|+. |.|. ..+||++|.||++|+|.... ..++.|+
T Consensus 9 p~i~~~~~I~~~a~I----~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~-----------~~~siIg 73 (192)
T TIGR02287 9 PVVHPEAYVHPTAVL----IGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFP-----------GQDTVVE 73 (192)
T ss_pred CcCCCCcEECCCCEE----EeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccC-----------CCCCeEC
Confidence 334455555555554 35678888888887 7776 36899999999999984211 0123333
Q ss_pred CCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 454 KGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 454 ~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
+++ .|+++++|.+|+|+++|.||.++++.+. .+++++++|++| .+|.++..|+++++
T Consensus 74 ~~~---~Ig~~a~I~~siIg~~~~IG~ga~I~~g------~~IG~~s~Vgag-s~V~~~~~ip~~~l 130 (192)
T TIGR02287 74 ENG---HVGHGAILHGCIVGRNALVGMNAVVMDG------AVIGENSIVAAS-AFVKAGAEMPAQYL 130 (192)
T ss_pred CCC---EECCCCEEcCCEECCCCEECCCcccCCC------eEECCCCEEcCC-CEECCCCEECCCeE
Confidence 344 8999999999999999999999988764 456666666666 56666666666654
No 100
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.31 E-value=2.4e-11 Score=112.11 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=75.2
Q ss_pred cceEECCCcEEce-eEEe----eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEEC
Q 009971 399 TDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIID 473 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~----~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~ 473 (521)
.++.||++|+|+. |.|. .++||++|.|+++|.|.+++.+... ....+.||+++ .|+.++++.+++||
T Consensus 16 g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~-----~~~~v~IG~~~---~i~~~~~i~~~~IG 87 (164)
T cd04646 16 GDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPA-----EPKPMIIGSNN---VFEVGCKCEALKIG 87 (164)
T ss_pred CceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCC-----CCCCeEECCCC---EECCCcEEEeeEEC
Confidence 4677888888887 7774 3699999999999999988765331 12344555555 57777888888888
Q ss_pred CCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCC
Q 009971 474 KNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSG 518 (521)
Q Consensus 474 ~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~g 518 (521)
++|.||.++.|.....+++++.++.+++|..+ +.|+++++++.+
T Consensus 88 d~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~-~~i~~~~vi~g~ 131 (164)
T cd04646 88 NNNVFESKSFVGKNVIITDGCIIGAGCKLPSS-EILPENTVIYGA 131 (164)
T ss_pred CCCEEeCCCEECCCCEECCCCEEeCCeEECCC-cEECCCeEEeCC
Confidence 88888888888765444444444444444444 444444444443
No 101
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.30 E-value=7.4e-11 Score=122.74 Aligned_cols=120 Identities=23% Similarity=0.301 Sum_probs=86.4
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
|+++.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. .+++|+|++....+.+.+++.+
T Consensus 3 ~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~~~---------- 66 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDLFPG---------- 66 (366)
T ss_pred CCCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhccC----------
Confidence 456899999999999995 379999999986 999999999986 4999999776554443333211
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHhcCCc
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDAD 234 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~ad 234 (521)
+.++.... +. ..|..++++.++..++ .+.+++++||+ +++.+ +..+++.+...+++
T Consensus 67 ----~~~i~d~~----~g-~~G~~~si~~gl~~~~---~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~ 124 (366)
T PRK14489 67 ----LPVYPDIL----PG-FQGPLSGILAGLEHAD---SEYLFVVACDTPFLPENLVKRLSKALAIEGAD 124 (366)
T ss_pred ----CcEEecCC----CC-CCChHHHHHHHHHhcC---CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCe
Confidence 11222111 11 1588899999987664 36799999998 66654 78888876555554
No 102
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.30 E-value=1.9e-11 Score=121.52 Aligned_cols=143 Identities=24% Similarity=0.272 Sum_probs=70.6
Q ss_pred cccCCCcccCCCCcCCCceee-cccc-------cceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccc-
Q 009971 374 FYDRSAPIYTQPRYLPPSKML-DADV-------TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYY- 442 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~-~~~i-------~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~- 442 (521)
.+++++.+..++.+.|.+.+. ++.| .+++||++|.||+ |.|. +++|+.++.||++|.|....+++.+-+
T Consensus 107 ~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg 186 (338)
T COG1044 107 VIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFG 186 (338)
T ss_pred cccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccc
Confidence 445666666655555555554 2222 2344445555554 4444 455555555555555554444444322
Q ss_pred -cc-ccc--ccccccCCCcceeeCCCCEEe-eeEECCC----CEECCCcEEeCCCccCCceeecCCeEEcCC-----eEE
Q 009971 443 -ET-DAD--RRFLAAKGSVPIGIGKNSHIK-RAIIDKN----ARIGDNVKIVNSDSVQEAARETDGYFIKSG-----IVT 508 (521)
Q Consensus 443 -e~-~~~--~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~----~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g-----~v~ 508 (521)
.. ... +-.++ |. |.||+++.|. ++.|++. ++||+++.|-|...++..++||++|.|.++ .+.
T Consensus 187 ~a~~~~g~~Ki~q~--g~--V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~ 262 (338)
T COG1044 187 YAGTAIGWVKIPQI--GR--VIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVK 262 (338)
T ss_pred cccccCCceEccee--ce--EEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccce
Confidence 11 110 00000 12 3444444444 4444444 555555555555555555555555555444 277
Q ss_pred ECCCCEECCCcc
Q 009971 509 IIKDALIPSGTI 520 (521)
Q Consensus 509 I~~~~~i~~gsv 520 (521)
||++|.||..+.
T Consensus 263 IG~~v~igg~vg 274 (338)
T COG1044 263 IGKYVIIGGQVG 274 (338)
T ss_pred ECCeEEECccee
Confidence 888888776553
No 103
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.29 E-value=3.9e-11 Score=114.82 Aligned_cols=144 Identities=24% Similarity=0.297 Sum_probs=71.8
Q ss_pred cccCCCcccCCCCcCCCceee-cccc-cceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcc----------------
Q 009971 374 FYDRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED---------------- 433 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~---------------- 433 (521)
++++.+.+...+.+.+.+.+. ++.+ .++.||++|.|+. +.|. +++||++|.|+++++|..
T Consensus 9 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~ 88 (205)
T cd03352 9 SIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIP 88 (205)
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEcC
Confidence 344444444444444444443 2334 4566777777765 6566 367777777777666642
Q ss_pred ---eEEECCc-cccccccccccccCC-CcceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCe-
Q 009971 434 ---TLLMGAD-YYETDADRRFLAAKG-SVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGI- 506 (521)
Q Consensus 434 ---s~i~~~~-~~e~~~~~~~~~~~~-~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~- 506 (521)
.++++.. +.... +.+..+ ...+.||+++.+. ++.|+.++.||+++.+.+...+....+++++++|+.+.
T Consensus 89 ~~~~v~Ig~~~~Ig~~----~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~ 164 (205)
T cd03352 89 QLGGVIIGDDVEIGAN----TTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVG 164 (205)
T ss_pred CcceEEECCCEEECCC----CEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCE
Confidence 1112211 11110 111000 0013445555554 44555555555555555444444444555555555441
Q ss_pred ----EEECCCCEECCCccC
Q 009971 507 ----VTIIKDALIPSGTII 521 (521)
Q Consensus 507 ----v~I~~~~~i~~gsvi 521 (521)
++|+++++|++|++|
T Consensus 165 v~~~~~ig~~~~i~~~s~v 183 (205)
T cd03352 165 IAGHLTIGDGVVIGAGSGV 183 (205)
T ss_pred EeCCcEECCCCEEcCCCEE
Confidence 668888888887764
No 104
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.28 E-value=4.3e-11 Score=109.44 Aligned_cols=96 Identities=20% Similarity=0.353 Sum_probs=70.8
Q ss_pred cceEECCCcEEce-eEEee----eEECCCCEECCCCEE-----cceEEECCccccccccccccccCCCcceeeCCCCEEe
Q 009971 399 TDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAII-----EDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK 468 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~~----s~ig~~~~Ig~~~~I-----~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~ 468 (521)
.++.||++|+|+. |.|.. +.||++|.|+++|+| .+++++++ +.|++++.+.
T Consensus 17 g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~-------------------~~Ig~~~~i~ 77 (155)
T cd04745 17 GDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEEN-------------------GHIGHGAILH 77 (155)
T ss_pred ccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCC-------------------CEECCCcEEE
Confidence 3577888888876 77763 899999999999999 34555544 4899999999
Q ss_pred eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 469 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 469 ~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
+++|++++.||.+++|.... +++++++|+.+ ++|.++..|+++++
T Consensus 78 ~~~Ig~~~~Ig~~~~I~~g~------~Ig~~~~Ig~~-s~v~~~~~i~~~~~ 122 (155)
T cd04745 78 GCTIGRNALVGMNAVVMDGA------VIGEESIVGAM-AFVKAGTVIPPRSL 122 (155)
T ss_pred CCEECCCCEECCCCEEeCCC------EECCCCEECCC-CEeCCCCEeCCCCE
Confidence 99999999999999997754 45555555555 44555555555443
No 105
>PLN02296 carbonate dehydratase
Probab=99.28 E-value=2.4e-11 Score=120.19 Aligned_cols=128 Identities=15% Similarity=0.303 Sum_probs=85.5
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEee----eEECCCCEECCCCEEcceEEECCccccccccc
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADR 448 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~----s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~ 448 (521)
+++..+.+...+.+.|.+.+ +.++.||++|.|+. |.|.. ++||++|.|+++|+|..+..-- .....
T Consensus 48 ~~~~~p~I~~~~~I~p~A~V----~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~-----~g~~~ 118 (269)
T PLN02296 48 IFDKAPVVDKDAFVAPSASV----IGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNL-----SGKVL 118 (269)
T ss_pred hcCCCCccCCCCEECCCcEE----EcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcc-----cCCCC
Confidence 33444555566666666665 34677888888876 76663 4899999999999886321100 00112
Q ss_pred cccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 449 RFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 449 ~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
.+.||+++ .||++++|.+|+|+++|.||.+++|.. +.+++++++|+.| ++|.+++.|+++++
T Consensus 119 ~siIG~~v---~IG~~avI~g~~Igd~v~IG~ga~I~~------gv~Ig~~a~Igag-SvV~~~~~I~~~~~ 180 (269)
T PLN02296 119 PTIIGDNV---TIGHSAVLHGCTVEDEAFVGMGATLLD------GVVVEKHAMVAAG-ALVRQNTRIPSGEV 180 (269)
T ss_pred CcEeCCCC---EECCCceecCCEECCCcEECCCcEECC------CeEECCCCEECCC-CEEecCCEeCCCeE
Confidence 34555555 788888888888999999988888875 4566667777777 66666666666664
No 106
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.27 E-value=4.1e-11 Score=113.57 Aligned_cols=101 Identities=24% Similarity=0.331 Sum_probs=64.5
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCcccccccc--ccc
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDAD--RRF 450 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~--~~~ 450 (521)
++++...+...+++.|.+.+. .++.||++|+|++ |.|.++.||++|.|++++.|+++++..+......+. ..+
T Consensus 11 ~~~~~v~ig~~~~I~~~a~i~----~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~ 86 (193)
T cd03353 11 YIDGDVEIGVDVVIDPGVILE----GKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGT 86 (193)
T ss_pred EEcCCeEECCCcEECCCCEEe----CcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCcc
Confidence 445555566666666666552 4678999999987 999989999999999999999888766533221111 123
Q ss_pred cccCCCcceeeCCCCEEeeeEECCCCEECCC
Q 009971 451 LAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 481 (521)
Q Consensus 451 ~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 481 (521)
.+++++ .|++++.+.+++|++++.|+..
T Consensus 87 ~Ig~~~---~Ig~~~~i~~s~ig~~~~i~~~ 114 (193)
T cd03353 87 VLGEGV---HIGNFVEIKKSTIGEGSKANHL 114 (193)
T ss_pred EECCCC---EECCcEEEecceEcCCCEeccc
Confidence 343333 4555555555555555544443
No 107
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.26 E-value=3.9e-11 Score=112.77 Aligned_cols=118 Identities=25% Similarity=0.315 Sum_probs=84.8
Q ss_pred EEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 90 ~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
+.+||||||.|+||+ ..||+|+|++|+ |||+|+++++.. .+++|+|++++.... +....+ +
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~~~----------~ 61 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQAGF----------G 61 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---HhhccC----------C
Confidence 368999999999998 369999999986 999999999986 599999998654322 221111 1
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHhcCCcE
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADI 235 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~adi 235 (521)
+.++.... .+..|+.++|+.++..++ .+.+++++||+ +.+.+ +.++++.+.+.++.+
T Consensus 62 -~~~i~~~~-----~~~~g~~~si~~al~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 120 (186)
T TIGR02665 62 -LPVVPDAL-----ADFPGPLAGILAGLRWAG---TDWVLTVPCDTPFLPEDLVARLAAALEASDADI 120 (186)
T ss_pred -CcEEecCC-----CCCCCCHHHHHHHHHhcC---CCeEEEEecCCCcCCHHHHHHHHHHhhccCCcE
Confidence 22322111 123799999999987764 47899999999 66655 788887765444443
No 108
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.25 E-value=5.4e-11 Score=108.29 Aligned_cols=118 Identities=22% Similarity=0.359 Sum_probs=81.2
Q ss_pred CCcccCCCCcCCCceeecccccceEECCCcEEce-eEEe----eeEECCCCEECCCCEEcceEEECCccccccccccccc
Q 009971 378 SAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH----HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLA 452 (521)
Q Consensus 378 ~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~----~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~ 452 (521)
...|.+++.+.|.+.+ ++++.||+++.|+. ++|+ ...||+++.|.+||+|... ....+.|
T Consensus 11 ~P~i~~~a~Va~~A~v----iGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~-----------~~~p~~I 75 (176)
T COG0663 11 SPKIDPTAFVAPSATV----IGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHAD-----------PGYPVTI 75 (176)
T ss_pred CCCCCCceEECCCCEE----EEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecC-----------CCCCeEE
Confidence 4445555666666655 57788888888887 7776 2466666666666665431 1235566
Q ss_pred cCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 453 AKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 453 ~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
|+++ +||+++.|++|.|+++|.||.++++.++ ++||++|+|++| .+|.++-.+|++++
T Consensus 76 G~~v---tIGH~aivHGc~Ig~~~lIGmgA~vldg------a~IG~~~iVgAg-alV~~~k~~p~~~L 133 (176)
T COG0663 76 GDDV---TIGHGAVVHGCTIGDNVLIGMGATVLDG------AVIGDGSIVGAG-ALVTPGKEIPGGSL 133 (176)
T ss_pred CCCc---EEcCccEEEEeEECCCcEEecCceEeCC------cEECCCcEEccC-CcccCCcCCCCCeE
Confidence 6666 8999999999999999999999999984 455556666666 55555555555543
No 109
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.24 E-value=6.3e-11 Score=117.22 Aligned_cols=133 Identities=17% Similarity=0.107 Sum_probs=78.8
Q ss_pred cCCCcccCCCCcCCCceee-cccc-cceEECCCcEEce-eEEe-------------eeEECCCCEECCCCEEcceEEECC
Q 009971 376 DRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-------------HSVVGLRSCISEGAIIEDTLLMGA 439 (521)
Q Consensus 376 ~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~~~~I~~-~~I~-------------~s~ig~~~~Ig~~~~I~~s~i~~~ 439 (521)
++.+.+...+++...+.+. .+.| .++.||++|.|++ +.|. +++||++|.|+++|+|......+.
T Consensus 21 ~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~ 100 (254)
T cd03351 21 GPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGG 100 (254)
T ss_pred CCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCC
Confidence 3333333333333333333 3333 3577788888876 7775 578888888888888875332221
Q ss_pred ccccccccccccccCCCc---ceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECC
Q 009971 440 DYYETDADRRFLAAKGSV---PIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 511 (521)
Q Consensus 440 ~~~e~~~~~~~~~~~~~~---~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~ 511 (521)
..... ..++.+++++. .+.||+++.|. ++.+..+++||++|+|.+...+..+++++++++|+.+ ++|-+
T Consensus 101 ~~~~I--G~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~-s~V~~ 173 (254)
T cd03351 101 GVTRI--GNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGG-SGVVQ 173 (254)
T ss_pred CceEE--CCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcC-CEEee
Confidence 00000 01233333321 12566666665 5667777888888888888888888888888888888 44433
No 110
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.24 E-value=7.9e-10 Score=107.85 Aligned_cols=115 Identities=26% Similarity=0.298 Sum_probs=80.3
Q ss_pred EEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCCh--HHHHHHHHHhhhccCCCCcCC
Q 009971 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNS--ASLNRHLSRAYASNMGGYKNE 168 (521)
Q Consensus 92 aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~--~~i~~~l~~~~~~~~~~~~~~ 168 (521)
|||||+|.++||. +|+|+|++|+ |||+|+++.+.+++ +++|+|+++... +.+.+++.. +
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~-~---------- 63 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK-L---------- 63 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH-c----------
Confidence 7999999999995 3999999987 99999999999987 899999998765 556666543 1
Q ss_pred CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCcEE
Q 009971 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADIT 236 (521)
Q Consensus 169 ~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~adit 236 (521)
+ ++++.. +.| + .+......++....+.++++.||+ +.+ ..++++++.+...+.+++
T Consensus 64 ~-v~~v~~------~~~--~---~l~~~~~~~~~~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 64 G-VKVFRG------SEE--D---VLGRYYQAAEEYNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred C-CeEEEC------Cch--h---HHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 1 223211 111 1 222222222222347899999999 665 459999998877666654
No 111
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.23 E-value=5.9e-11 Score=117.02 Aligned_cols=117 Identities=19% Similarity=0.231 Sum_probs=57.9
Q ss_pred eEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCcc---ccccccccccccCCCcceeeCCCCEEe-eeEECC
Q 009971 401 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADY---YETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDK 474 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~---~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~ 474 (521)
++|+++++|++ |.|. +++|..++.||++|.|.+...++... ...+......||+++ .|+++++|. .+.++.
T Consensus 24 ~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~---~I~e~vtI~~gt~~g~ 100 (255)
T PRK12461 24 AVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRN---VIREGVTIHRGTKGGG 100 (255)
T ss_pred CEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCce---EECCccEEecCcccCC
Confidence 55555555554 5555 55555555666666665444444311 000111233444444 445555444 233344
Q ss_pred CCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EEECCCCEECCCcc
Q 009971 475 NARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGTI 520 (521)
Q Consensus 475 ~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~I~~~~~i~~gsv 520 (521)
.+.||+++.|.....+...+.+|+++.|+.+. ++|+++++|+++++
T Consensus 101 ~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~ 151 (255)
T PRK12461 101 VTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCL 151 (255)
T ss_pred cEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCE
Confidence 55555555555555555555555555555431 55666666655554
No 112
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.22 E-value=1.3e-10 Score=111.23 Aligned_cols=143 Identities=20% Similarity=0.248 Sum_probs=95.4
Q ss_pred ccCCCcccCCCCcCCCceee-ccccc-ceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCcccccc-----
Q 009971 375 YDRSAPIYTQPRYLPPSKML-DADVT-DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETD----- 445 (521)
Q Consensus 375 ~~~~~~i~~~~~~~~~~~i~-~~~i~-~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~----- 445 (521)
+++.+.|...+.+.++++++ ++.|. .++|++++.|++ |.|. ++.|+.++.||++|.|.+...++.+.++..
T Consensus 4 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ 83 (205)
T cd03352 4 IGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGG 83 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCc
Confidence 46677777777777777775 44453 377777777776 7776 677777778888888877555554322111
Q ss_pred -----ccccccccCCCcceeeCCCCEEe-----eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEE
Q 009971 446 -----ADRRFLAAKGSVPIGIGKNSHIK-----RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALI 515 (521)
Q Consensus 446 -----~~~~~~~~~~~~~~~Ig~~~~i~-----~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i 515 (521)
....++++++. .|++++.+. ++.|++++.|+.++.|.....+++...++.++.+..+ ++|++++.|
T Consensus 84 ~~~~~~~~~v~Ig~~~---~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~-~~Ig~~~~i 159 (205)
T cd03352 84 WVKIPQLGGVIIGDDV---EIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGS-TTIGDNVII 159 (205)
T ss_pred EEEcCCcceEEECCCE---EECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccc-cEECCCeEE
Confidence 11245566555 677777764 3677777777777777766666666666666666666 888888888
Q ss_pred CCCccC
Q 009971 516 PSGTII 521 (521)
Q Consensus 516 ~~gsvi 521 (521)
+++++|
T Consensus 160 g~~~~v 165 (205)
T cd03352 160 GGQVGI 165 (205)
T ss_pred cCCCEE
Confidence 888764
No 113
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.22 E-value=9e-11 Score=111.11 Aligned_cols=101 Identities=15% Similarity=0.232 Sum_probs=73.7
Q ss_pred cceEECCCcEEce-eEEee----eEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEEC
Q 009971 399 TDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIID 473 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~~----s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~ 473 (521)
.++.||++|.|+. |.|.. .+||.+|.||++|+|..... ..+.+++++ .||+++.+.+++|+
T Consensus 27 g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~-----------~~siIg~~~---~Ig~~a~i~g~vIG 92 (196)
T PRK13627 27 GDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCD-----------TDTIVGENG---HIGHGAILHGCVIG 92 (196)
T ss_pred CceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCC-----------CCCEECCCC---EECCCcEEeeEEEC
Confidence 4677888888886 77764 58999999999998865321 234555555 89999999999999
Q ss_pred CCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 474 KNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 474 ~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
++|.||.++++.+. .++++++.|++| .+|-++..++++++
T Consensus 93 ~~v~IG~ga~V~~g------~~IG~~s~Vgag-s~V~~~~~ip~~~~ 132 (196)
T PRK13627 93 RDALVGMNSVIMDG------AVIGEESIVAAM-SFVKAGFQGEKRQL 132 (196)
T ss_pred CCCEECcCCccCCC------cEECCCCEEcCC-CEEeCCcCcCCCcE
Confidence 99999999998764 456666666666 55556665655543
No 114
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.22 E-value=5.3e-11 Score=127.50 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=62.1
Q ss_pred cccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCcccccccc-ccccccCCCcceeeCCCCEEeee-
Q 009971 395 DADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDAD-RRFLAAKGSVPIGIGKNSHIKRA- 470 (521)
Q Consensus 395 ~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~-~~~~~~~~~~~~~Ig~~~~i~~~- 470 (521)
++.+.+++||++|.|+. +.|. +++||++|.||+++.+.++.+..+..+..... ..+.||+++ .||.++.+.+.
T Consensus 308 ~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~~~i~~~~~i~~~~Ig~~~---~ig~~~~~~~~~ 384 (451)
T TIGR01173 308 YSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKGSKAGHLSYLGDAEIGSNV---NIGAGTITCNYD 384 (451)
T ss_pred ecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCCcEecceeeEeeeEEcCCc---EECCCeEEeCcc
Confidence 34455677888888887 7777 68888888888888888777665432211100 123334433 34444444210
Q ss_pred E-ECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 471 I-IDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 471 i-i~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
- -+.++.||++++|+....+..+.++|++++|++|
T Consensus 385 ~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g 420 (451)
T TIGR01173 385 GANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAG 420 (451)
T ss_pred cccCCCCEECCCcEECCCCEEECCcEECCCCEEccC
Confidence 0 0013455555555554444556778888888888
No 115
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.20 E-value=8.3e-11 Score=112.22 Aligned_cols=14 Identities=43% Similarity=0.624 Sum_probs=6.3
Q ss_pred EEECCCCEECCCcc
Q 009971 507 VTIIKDALIPSGTI 520 (521)
Q Consensus 507 v~I~~~~~i~~gsv 520 (521)
++||++++|++|++
T Consensus 127 v~Ig~~~~I~~gs~ 140 (204)
T TIGR03308 127 VTIGNGAVIAAGAV 140 (204)
T ss_pred CEECCCCEECCCCE
Confidence 44444444444443
No 116
>PLN02472 uncharacterized protein
Probab=99.20 E-value=1.6e-10 Score=112.94 Aligned_cols=125 Identities=14% Similarity=0.223 Sum_probs=83.9
Q ss_pred CCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEee----eEECCCCEECCCCEEcceEEECCcccccccccccc
Q 009971 377 RSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFL 451 (521)
Q Consensus 377 ~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~----s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~ 451 (521)
....+...+.+.|.+.+ ++++.||++|.|+. ++|.. .+||.+|.|+++|+|........ .....+.
T Consensus 58 ~~p~i~~~~~I~p~a~i----~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~-----~i~~~tv 128 (246)
T PLN02472 58 WVPKVAVDAYVAPNVVL----AGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPT-----GLPAETL 128 (246)
T ss_pred cCCccCCCCEECCCCEE----ecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCcccc-----CCCCCcE
Confidence 33445556666666665 34677888888876 66652 68999999999999953210000 0002344
Q ss_pred ccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 452 AAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 452 ~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
||+++ .||++|.|.+|+|+++|.||.+++|..+ ..+++++.|+.| .+|.++..|++|++
T Consensus 129 IG~~v---~IG~~s~L~~~~Igd~v~IG~~svI~~g------avIg~~~~Ig~g-svV~~g~~Ip~g~~ 187 (246)
T PLN02472 129 IDRYV---TIGAYSLLRSCTIEPECIIGQHSILMEG------SLVETHSILEAG-SVLPPGRRIPTGEL 187 (246)
T ss_pred ECCCC---EECCCcEECCeEEcCCCEECCCCEECCC------CEECCCCEECCC-CEECCCCEeCCCCE
Confidence 55555 8999999999999999999999988764 456666666666 56666666666654
No 117
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.20 E-value=1.4e-10 Score=114.82 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=27.8
Q ss_pred eeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 460 GIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 460 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
.||+++.|. ++.|..+++||++++|.+...+..+.+++++++|+++
T Consensus 121 ~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~ 167 (254)
T TIGR01852 121 VVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGL 167 (254)
T ss_pred EECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeee
Confidence 445555554 4555556666666666666666666666666666666
No 118
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.20 E-value=1e-10 Score=94.68 Aligned_cols=65 Identities=25% Similarity=0.457 Sum_probs=53.0
Q ss_pred ECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCC
Q 009971 403 IGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 481 (521)
Q Consensus 403 Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 481 (521)
||++++|++ +.|.+++||++|.|+++|+|++++++.+ +.|++++.|.+++|++++.||++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~-------------------~~ig~~~~l~~svi~~~~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDN-------------------VTIEDGCTLENCIIGNGAVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeccEEeCCCEECCC
Confidence 677777776 7777888888888888888888888776 57888888888888888888888
Q ss_pred cEEeC
Q 009971 482 VKIVN 486 (521)
Q Consensus 482 ~~i~~ 486 (521)
+.+.+
T Consensus 63 ~~v~~ 67 (81)
T cd04652 63 CKLKD 67 (81)
T ss_pred CEEcc
Confidence 88864
No 119
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.19 E-value=1.5e-10 Score=119.58 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=34.1
Q ss_pred ccccCCCcceeeCCCCEEe-----eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 450 FLAAKGSVPIGIGKNSHIK-----RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 450 ~~~~~~~~~~~Ig~~~~i~-----~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+.||+++ .||++++|. +++|++++.|+.++.|.....+++.+.++.++.|..+ ++||+++.|+.++.|
T Consensus 204 v~Ig~~v---~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~-~~iG~~~~ig~~~~i 276 (343)
T PRK00892 204 VIIGDDV---EIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGS-TKIGRYCMIGGQVGI 276 (343)
T ss_pred EEECCCc---EECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCC-CEECCceEECCCCEE
Confidence 3444444 556655553 2444444444444444433333333333333333333 677777777777653
No 120
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.18 E-value=1.4e-10 Score=115.12 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=16.7
Q ss_pred eEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEE
Q 009971 401 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLM 437 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~ 437 (521)
++|+++++|++ |.|. +++|+.++.||++|+|.....+
T Consensus 27 ~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I 65 (262)
T PRK05289 27 CVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASI 65 (262)
T ss_pred eEECCCCEECCCCEECCCCEEcCccEECCCCEEccccee
Confidence 44444444443 4444 3444444444445444443333
No 121
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.18 E-value=2.2e-10 Score=116.98 Aligned_cols=61 Identities=23% Similarity=0.322 Sum_probs=34.9
Q ss_pred eeCCCCEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC-----eEEECCCCEECCCccC
Q 009971 460 GIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG-----IVTIIKDALIPSGTII 521 (521)
Q Consensus 460 ~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g-----~v~I~~~~~i~~gsvi 521 (521)
.||++++|.+..+ .+++||+++.|.+...+++.+++|+++.|..+ .++||++++|++++.|
T Consensus 203 ~IGa~~~I~r~~~-~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I 268 (324)
T TIGR01853 203 EIGANTTIDRGAF-DDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGV 268 (324)
T ss_pred EECCCCEEecCCc-CcceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEcccccc
Confidence 4555555532211 23555555555555555556666666666544 2778888888777654
No 122
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.17 E-value=9.6e-10 Score=114.65 Aligned_cols=109 Identities=11% Similarity=0.197 Sum_probs=77.7
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcC
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 167 (521)
+++.+||||||.|+||+ .+|+|+|++|+ |||+|+++.+... +++|+|+++..... . +.. +.
T Consensus 173 ~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~~-~~~vvV~~~~~~~~--~-~~~-~~-------- 233 (369)
T PRK14490 173 VPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRPH-CQEVFISCRAEQAE--Q-YRS-FG-------- 233 (369)
T ss_pred CCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHhh-CCEEEEEeCCchhh--H-Hhh-cC--------
Confidence 56789999999999998 59999999987 9999999999874 78898887644221 1 111 10
Q ss_pred CCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHH
Q 009971 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQA 227 (521)
Q Consensus 168 ~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~ 227 (521)
+.++.... ...|...++..++.... .+.+++++||+ +.+.+ +..+++.
T Consensus 234 ---v~~i~d~~------~~~Gpl~gi~~al~~~~---~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 234 ---IPLITDSY------LDIGPLGGLLSAQRHHP---DAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred ---CcEEeCCC------CCCCcHHHHHHHHHhCC---CCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 22332221 12677788888776543 46899999999 66655 6677664
No 123
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.15 E-value=9.7e-11 Score=118.98 Aligned_cols=114 Identities=18% Similarity=0.357 Sum_probs=73.1
Q ss_pred ceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccc-cccccccccCCCcceeeCCCCEEe-eeEECCC
Q 009971 400 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYET-DADRRFLAAKGSVPIGIGKNSHIK-RAIIDKN 475 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~-~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~ 475 (521)
++.||.+++|.. +.++ ++.||++|.||++|+|.||.|..+.-+.. .....+.+++|+ .||+.++++ ++.++.+
T Consensus 268 dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~---~VGPfA~LRPg~~L~~~ 344 (460)
T COG1207 268 DVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGA---TVGPFARLRPGAVLGAD 344 (460)
T ss_pred cEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCc---ccCCccccCCcCcccCC
Confidence 345555555554 5555 67777777777777777777766544322 333455666666 788888888 8888888
Q ss_pred CEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCc
Q 009971 476 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGT 519 (521)
Q Consensus 476 ~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gs 519 (521)
+.||..|.+++ ..++++.+.++-.|||+. .||+++.||+||
T Consensus 345 ~hIGNFVEvK~-a~ig~gsKa~HLtYlGDA--~iG~~~NiGAGt 385 (460)
T COG1207 345 VHIGNFVEVKK-ATIGKGSKAGHLTYLGDA--EIGENVNIGAGT 385 (460)
T ss_pred CeEeeeEEEec-ccccCCccccceeeeccc--eecCCceeccce
Confidence 88888888875 556665554444444443 444444444444
No 124
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.13 E-value=4e-10 Score=103.87 Aligned_cols=66 Identities=18% Similarity=0.307 Sum_probs=50.0
Q ss_pred cccCCCcccCCCCcCCCceee-------ccccc-ceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECC
Q 009971 374 FYDRSAPIYTQPRYLPPSKML-------DADVT-DSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGA 439 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~-------~~~i~-~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~ 439 (521)
++++.+.|.+.+.+.+++.++ ++.+. +++|+++|.|++ +.|.+++|++++.|+.++.+.++++.++
T Consensus 19 ~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~ 93 (163)
T cd05636 19 WIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGEN 93 (163)
T ss_pred EEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCC
Confidence 555566665555555544443 34454 589999999998 9999999999999999999999888776
No 125
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.12 E-value=8.5e-10 Score=100.71 Aligned_cols=101 Identities=20% Similarity=0.216 Sum_probs=68.0
Q ss_pred cceEECCCcEEce-eEEee----eEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEEC
Q 009971 399 TDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIID 473 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~~----s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~ 473 (521)
.++.||++|.|++ |.|.. .+||++|.|+++|.|.... ..++.|+++ +.|++++++.+++|+
T Consensus 17 ~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~-----------~~~~~Ig~~---~~I~~~~~i~~~~Ig 82 (154)
T cd04650 17 GDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDH-----------GYPTEIGDY---VTIGHNAVVHGAKVG 82 (154)
T ss_pred eeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCC-----------CCCeEECCC---CEECCCcEEECcEEC
Confidence 4567888888887 77775 4999999999999997620 011223333 489999999999999
Q ss_pred CCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCE
Q 009971 474 KNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDAL 514 (521)
Q Consensus 474 ~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~ 514 (521)
+++.||.++.+.....+++...++.++.+..+ ..|+++++
T Consensus 83 ~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g-~~i~~~~v 122 (154)
T cd04650 83 NYVIVGMGAILLNGAKIGDHVIIGAGAVVTPG-KEIPDYSL 122 (154)
T ss_pred CCCEEcCCCEEeCCCEECCCCEECCCCEECCC-cEeCCCCE
Confidence 99999999999765444444444444444433 34444444
No 126
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.12 E-value=8.1e-10 Score=102.29 Aligned_cols=120 Identities=22% Similarity=0.354 Sum_probs=76.6
Q ss_pred ccCCCCcCCCceeecccccceEECCCcEEce-eEEe-----eeEECCCCEECCCCEEcceEEECCccccccccccccccC
Q 009971 381 IYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-----HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAK 454 (521)
Q Consensus 381 i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-----~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~ 454 (521)
|..++.+.|.+.+. .++.||++|+|++ |.|. ++.||++|.|++++.|.... + ....+|+
T Consensus 5 ig~~~~I~~~a~i~----~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~--~---------~~v~Ig~ 69 (167)
T cd00710 5 IDPSAYVHPTAVVI----GDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALE--G---------YSVWIGK 69 (167)
T ss_pred eCCCeEECCCCEEE----eeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecC--C---------CCEEECC
Confidence 33444444544442 3456677777776 5554 36788888888887774210 0 1223334
Q ss_pred CCcceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 455 GSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 455 ~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
++ .|+.++.|. .++|+++|.||.++.|.+ ..+++.+.++.++.|. + +.|++++.+++|+++
T Consensus 70 ~~---~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~-~~Ig~~~~Ig~~s~i~-~-~~i~~~~~v~~~~~v 131 (167)
T cd00710 70 NV---SIAHGAIVHGPAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVVD-G-VEIPPGRYVPAGAVI 131 (167)
T ss_pred Cc---eECCCCEEeCCEEECCCCEECCCCEEEC-CEECCCCEEcCCCEEe-C-CEeCCCCEECCCCEE
Confidence 44 788888887 489999999999998863 5566666666666663 4 577888888888764
No 127
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.11 E-value=4.5e-10 Score=120.58 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=19.2
Q ss_pred CEECCCcEEeCCCccCCceeecCCeEEcCCeEE
Q 009971 476 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVT 508 (521)
Q Consensus 476 ~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~ 508 (521)
++||+++++.....+..+.++|++++|++|.++
T Consensus 399 ~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~v 431 (456)
T PRK14356 399 TVIGEGAFIGSNTALVAPVTIGDGALVGAGSVI 431 (456)
T ss_pred CEECCCcEEcCCCEEeCCcEECCCCEEcCCCEE
Confidence 444444444444444445677778888777433
No 128
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.10 E-value=1.3e-09 Score=99.39 Aligned_cols=95 Identities=20% Similarity=0.394 Sum_probs=67.8
Q ss_pred cceEECCCcEEce-eEEee----eEECCCCEECCCCEEcce-----EEECCccccccccccccccCCCcceeeCCCCEEe
Q 009971 399 TDSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDT-----LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK 468 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~~----s~ig~~~~Ig~~~~I~~s-----~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~ 468 (521)
.++.||++|.|++ +.|.. ++||++|.|+++|+|.++ ++..+ +.|+.++++.
T Consensus 16 g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~-------------------~~I~~~~~i~ 76 (153)
T cd04645 16 GDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDN-------------------VTVGHGAVLH 76 (153)
T ss_pred EeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCC-------------------cEECCCcEEe
Confidence 3567888888886 76663 589999999999999875 44443 4899999999
Q ss_pred eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCc
Q 009971 469 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGT 519 (521)
Q Consensus 469 ~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gs 519 (521)
+++|++++.||.++.+..... ++++++|+.+ ++|.++..|++++
T Consensus 77 ~~~Ig~~~~Ig~~~~v~~~~~------ig~~~~ig~~-~~v~~~~~i~~~~ 120 (153)
T cd04645 77 GCTIGDNCLIGMGAIILDGAV------IGKGSIVAAG-SLVPPGKVIPPGS 120 (153)
T ss_pred eeEECCCCEECCCCEEcCCCE------ECCCCEECCC-CEECCCCEeCCCC
Confidence 999999999999999975544 4445555544 4444444444443
No 129
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.08 E-value=5e-10 Score=120.24 Aligned_cols=112 Identities=14% Similarity=0.124 Sum_probs=65.9
Q ss_pred cccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccc-cccccccCCCcceeeCCCCEEee-e
Q 009971 395 DADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDA-DRRFLAAKGSVPIGIGKNSHIKR-A 470 (521)
Q Consensus 395 ~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~-~~~~~~~~~~~~~~Ig~~~~i~~-~ 470 (521)
++.+.+++||++|.|++ +.|. ++.||.++.||+++.|.++.++.+..+-... ..++.||+++ .||+++.+.+ .
T Consensus 312 ~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~~~~~~~~g~~~ig~~~---~ig~~~~~~~~~ 388 (456)
T PRK09451 312 YSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNV---NIGAGTITCNYD 388 (456)
T ss_pred CEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeCCCCccCccccccccEECCCC---EEcCCeEEeccc
Confidence 34456677788888887 7777 7888888888888888888877654321110 0223333333 3444443321 0
Q ss_pred EE-CCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEEC
Q 009971 471 II-DKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTII 510 (521)
Q Consensus 471 ii-~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~ 510 (521)
-. +..++||++|+|.....+..+.+++++++|++| ++|.
T Consensus 389 ~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g-s~v~ 428 (456)
T PRK09451 389 GANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAG-TTVT 428 (456)
T ss_pred CcccCCCEECCCcEECCCCEEeCCcEECCCCEECCC-CEEc
Confidence 00 013555555555555555566777778888777 4443
No 130
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.08 E-value=6.5e-10 Score=109.59 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=10.7
Q ss_pred eeCCCCEEe-eeEECCCCEECCCcEEeC
Q 009971 460 GIGKNSHIK-RAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 460 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~ 486 (521)
.||++|.|. +|.|..++.||++++|..
T Consensus 178 iIgDnv~IGa~s~I~~Gv~IGdgavIga 205 (272)
T PRK11830 178 IIEDNCFIGARSEVVEGVIVEEGSVLGM 205 (272)
T ss_pred EEcCCCEECCCCEEcCCCEECCCCEEcC
Confidence 344444443 333333344444443333
No 131
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.07 E-value=9.6e-10 Score=103.71 Aligned_cols=113 Identities=24% Similarity=0.326 Sum_probs=81.7
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
+++|.+||||||.|+|| .+|+|++++|+ |||+|+++.|....- .++|....+.+. +...
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~~~---------- 60 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR---YAEF---------- 60 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh---hhcc----------
Confidence 45799999999999999 57999999996 999999999999744 555555444331 2211
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHhcC
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETD 232 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~ 232 (521)
+ ++++.+.. .++ |...+++.++..+. .+.+++++||+ +...+ +..+++...+.+
T Consensus 61 --g-~~vv~D~~-----~~~-GPL~Gi~~al~~~~---~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 61 --G-LPVVPDEL-----PGF-GPLAGILAALRHFG---TEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred --C-CceeecCC-----CCC-CCHHHHHHHHHhCC---CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 1 34443321 222 89999999997775 47999999999 66655 666666655444
No 132
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.07 E-value=1e-09 Score=88.18 Aligned_cols=65 Identities=45% Similarity=0.673 Sum_probs=55.8
Q ss_pred ECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCC
Q 009971 403 IGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 481 (521)
Q Consensus 403 Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 481 (521)
||++|.|++ +.|.+++||++|+|++++.|++++++++ +.|++++.+.+++|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~-------------------~~i~~~~~i~~svv~~~~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDN-------------------VTIGANSVIVDSIIGDNAVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCC-------------------CEECCCCEEECCEECCCCEECCC
Confidence 677777776 7777889999999999999999988876 57999999999999999999998
Q ss_pred cEEeC
Q 009971 482 VKIVN 486 (521)
Q Consensus 482 ~~i~~ 486 (521)
+.+.+
T Consensus 63 ~~i~~ 67 (79)
T cd03356 63 VRVVN 67 (79)
T ss_pred CEEcC
Confidence 88865
No 133
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.06 E-value=8.2e-10 Score=104.60 Aligned_cols=99 Identities=15% Similarity=0.252 Sum_probs=73.1
Q ss_pred ECCCcEEce-eEE-eeeEECCCCEECCCCEEcce---EEECCccccccccccccccCCCcceeeCCCCEEe-----eeEE
Q 009971 403 IGEGCVIKN-CKI-HHSVVGLRSCISEGAIIEDT---LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-----RAII 472 (521)
Q Consensus 403 Ig~~~~I~~-~~I-~~s~ig~~~~Ig~~~~I~~s---~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-----~~ii 472 (521)
|+++++|.. +.| .+++||++|.|+++|+|.++ ++++. + +.||++|+|+ +++|
T Consensus 13 i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~---------------~---~~Ig~~~~I~~~~~~~siI 74 (196)
T PRK13627 13 VHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQA---------------G---ANLQDGCIMHGYCDTDTIV 74 (196)
T ss_pred cCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECC---------------C---CEECCCCEEeCCCCCCCEE
Confidence 344444443 332 47889999999999998764 33332 2 4778888774 4789
Q ss_pred CCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 473 DKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 473 ~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
++++.||.++++.+ ..+++.+.+|.++.|..| ++||+++.|++||+|
T Consensus 75 g~~~~Ig~~a~i~g-~vIG~~v~IG~ga~V~~g-~~IG~~s~Vgags~V 121 (196)
T PRK13627 75 GENGHIGHGAILHG-CVIGRDALVGMNSVIMDG-AVIGEESIVAAMSFV 121 (196)
T ss_pred CCCCEECCCcEEee-EEECCCCEECcCCccCCC-cEECCCCEEcCCCEE
Confidence 99999999998865 447777778888888888 889999999999975
No 134
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.06 E-value=1.3e-09 Score=99.67 Aligned_cols=86 Identities=14% Similarity=0.303 Sum_probs=52.9
Q ss_pred eeEECCCCEECCCCEEcce---EEECCccccccccccccccCCCcceeeCCCCEE-----eeeEECCCCEECCCcEEeCC
Q 009971 416 HSVVGLRSCISEGAIIEDT---LLMGADYYETDADRRFLAAKGSVPIGIGKNSHI-----KRAIIDKNARIGDNVKIVNS 487 (521)
Q Consensus 416 ~s~ig~~~~Ig~~~~I~~s---~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i-----~~~ii~~~~~Ig~~~~i~~~ 487 (521)
++.||++|.|+++|+|.+. +.++ ++ +.|+++|+| .+++|++++.|+.++++.+
T Consensus 18 ~v~IG~~~~I~~~~~i~~~~~~i~IG---------------~~---~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~- 78 (155)
T cd04745 18 DVIIGKNCYIGPHASLRGDFGRIVIR---------------DG---ANVQDNCVIHGFPGQDTVLEENGHIGHGAILHG- 78 (155)
T ss_pred cEEECCCCEECCCcEEeCCCCcEEEC---------------CC---CEECCCCEEeecCCCCeEEcCCCEECCCcEEEC-
Confidence 5667777777777666541 2222 22 366677766 4567777777777766643
Q ss_pred CccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 488 DSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 488 ~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
..+++.+.++.+++|..+ ++|+++++|+++++|
T Consensus 79 ~~Ig~~~~Ig~~~~I~~g-~~Ig~~~~Ig~~s~v 111 (155)
T cd04745 79 CTIGRNALVGMNAVVMDG-AVIGEESIVGAMAFV 111 (155)
T ss_pred CEECCCCEECCCCEEeCC-CEECCCCEECCCCEe
Confidence 456666666666666666 666666666666643
No 135
>PLN02296 carbonate dehydratase
Probab=99.05 E-value=1.3e-09 Score=107.87 Aligned_cols=103 Identities=22% Similarity=0.365 Sum_probs=74.9
Q ss_pred EECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-----------
Q 009971 402 VIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK----------- 468 (521)
Q Consensus 402 ~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~----------- 468 (521)
.|+++++|.. +.|. ++.||++|.|+++|+|...+ ....||++ +.|+++|+|.
T Consensus 54 ~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~------------~~I~IG~~---~~I~d~~vI~~~~~~~~g~~~ 118 (269)
T PLN02296 54 VVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDV------------NSISVGSG---TNIQDNSLVHVAKTNLSGKVL 118 (269)
T ss_pred ccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCC------------CceEECCC---CEECCCCEEEeCCCcccCCCC
Confidence 3566666655 4433 67888889888888887542 01122223 3788888774
Q ss_pred eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 469 RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 469 ~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+++||++|.||.+++|.+ ..+++.+.++.++.|.+| ++|+++++|++||+|
T Consensus 119 ~siIG~~v~IG~~avI~g-~~Igd~v~IG~ga~I~~g-v~Ig~~a~IgagSvV 169 (269)
T PLN02296 119 PTIIGDNVTIGHSAVLHG-CTVEDEAFVGMGATLLDG-VVVEKHAMVAAGALV 169 (269)
T ss_pred CcEeCCCCEECCCceecC-CEECCCcEECCCcEECCC-eEECCCCEECCCCEE
Confidence 578999999999998854 567888888888888888 889999999988875
No 136
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=99.04 E-value=1.9e-08 Score=99.89 Aligned_cols=213 Identities=14% Similarity=0.158 Sum_probs=128.1
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecC---CCcchhHHHHHHhHh--------CCCceEEEEecCChHHHHHHHHHhh-
Q 009971 91 LGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRLIDIPVSNCLN--------SNISKIYVLTQFNSASLNRHLSRAY- 158 (521)
Q Consensus 91 ~aVILAaG~GtRl~PlT~~~PK~LlpI~---G~~pLI~~~l~~l~~--------~gi~~I~Iv~~~~~~~i~~~l~~~~- 158 (521)
.+||||||.||||+ ...||+|+||+ |+ |+|++.++++.. .+|..+++...+..+.+.+|+++..
T Consensus 2 a~viLaGG~GtRLg---~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~ 77 (266)
T cd04180 2 AVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQ 77 (266)
T ss_pred EEEEECCCCccccC---CCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCC
Confidence 58999999999996 68999999998 76 999999999975 3466666666677789999999843
Q ss_pred hccCCCCcCCCcEEEeeccc-----CCCCCCC-CCChHHHHHHH-----HHHhhhcCcceEEEEeCCe-eccc-cHHHHH
Q 009971 159 ASNMGGYKNEGFVEVLAAQQ-----SPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDH-LYRM-DYERFI 225 (521)
Q Consensus 159 ~~~~~~~~~~~~v~vl~~~q-----~~~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll 225 (521)
....-..|.++.+..+.... ......| +.|.++.+... ++.+.+...+++.+.+.|. +... |.. ++
T Consensus 78 ~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~-~l 156 (266)
T cd04180 78 KNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPL-FI 156 (266)
T ss_pred CCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHH-HH
Confidence 11110111222122211110 0011123 56777755533 2333344678899999999 5555 543 56
Q ss_pred HHHHhcCCcEEEEEEecCcccCcceeEEEeCCCC--CeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEE
Q 009971 226 QAHRETDADITVAALPMDEKRATAFGLMKIDEEG--RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYV 303 (521)
Q Consensus 226 ~~h~~~~aditi~~~~~~~~~~~~~g~v~~d~~g--rV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyi 303 (521)
-.+...+.++.+-+.+....+ ..-|.+...++| .++++.+-|+........ . ..............++..++
T Consensus 157 G~~~~~~~~~~~kvv~K~~~d-~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~--~---~~~~~~~~~~~~~~n~~~~~ 230 (266)
T cd04180 157 GIAIQNRKAINQKVVPKTRNE-ESGGYRIANINGRVQLLEYDQIKKLLKQKMVN--N---QIPKDIDDAPFFLFNTNNLI 230 (266)
T ss_pred HHHHHcCCCEEEEEEECCCCC-CeEEEEEEecCCCEEEEEeccCCHHHHhcccc--c---cCcCCCCceeeccceEEEEE
Confidence 677777888776655543322 234555543224 478887766543221000 0 00000112234678999999
Q ss_pred EeHHHHHHHHh
Q 009971 304 ISKDVMLNLLR 314 (521)
Q Consensus 304 fs~~vl~~ll~ 314 (521)
|+-+.++++++
T Consensus 231 ~~l~~l~~~~~ 241 (266)
T cd04180 231 NFLVEFKDRVD 241 (266)
T ss_pred EEHHHHHHHHH
Confidence 99988887664
No 137
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=3.4e-10 Score=119.45 Aligned_cols=92 Identities=18% Similarity=0.326 Sum_probs=80.0
Q ss_pred cCCCcccCCCCcCCCceee-cccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCcccccccccccccc
Q 009971 376 DRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAA 453 (521)
Q Consensus 376 ~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~ 453 (521)
.+.+.+..++.++.+++|+ +++|.|++||.||.||. |.|.+|+|+.+|+||+||+|+.++++++
T Consensus 325 ~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~-------------- 390 (673)
T KOG1461|consen 325 SHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDD-------------- 390 (673)
T ss_pred hhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecC--------------
Confidence 3356667777788888887 78899999999999998 9999999999999999999999999987
Q ss_pred CCCcceeeCCCCEEe-eeEECCCCEECCCcEEeC
Q 009971 454 KGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 454 ~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~ 486 (521)
+.|++++++. +|+|+-++++|++-++..
T Consensus 391 -----v~i~~~~~l~~g~vl~~~VVv~~~~~l~~ 419 (673)
T KOG1461|consen 391 -----VKIGEGAILKPGSVLGFGVVVGRNFVLPK 419 (673)
T ss_pred -----cEeCCCcccCCCcEEeeeeEeCCCccccc
Confidence 7899999995 888888888888877764
No 138
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.04 E-value=1.3e-09 Score=87.42 Aligned_cols=65 Identities=26% Similarity=0.465 Sum_probs=54.2
Q ss_pred ECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCC
Q 009971 403 IGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 481 (521)
Q Consensus 403 Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 481 (521)
||++|.|++ |.|.+++||++|.|+++|+|.+++++++ +.|+++++|.+++|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDD-------------------VTIEDGCTIHHSIVADGAVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeCcEEcCCCEECCC
Confidence 577777776 7777889999999999999998888876 57899999988888888888888
Q ss_pred cEEeC
Q 009971 482 VKIVN 486 (521)
Q Consensus 482 ~~i~~ 486 (521)
+.+..
T Consensus 63 ~~i~~ 67 (79)
T cd05787 63 CTIPP 67 (79)
T ss_pred CEECC
Confidence 77764
No 139
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.04 E-value=7.1e-09 Score=106.50 Aligned_cols=109 Identities=13% Similarity=0.178 Sum_probs=79.4
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCC
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 168 (521)
.+.+||||||.|+||+ .+|.|+|+.|+ ||++|+++.|... +++|+|+++... .. + +..
T Consensus 160 ~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~~-~~~ViVv~~~~~--~~-~----~~~-------- 217 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAKY-CEQVFLSARPSQ--WQ-G----TPL-------- 217 (346)
T ss_pred CceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHhh-CCEEEEEeCchH--hh-h----ccc--------
Confidence 5789999999999998 69999999986 9999999998875 889988885431 11 0 000
Q ss_pred CcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHH
Q 009971 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAH 228 (521)
Q Consensus 169 ~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h 228 (521)
..+.++... .+..|...+|+.++..+. .+++++++||+ +.+.+ +..+++.+
T Consensus 218 ~~v~~I~D~------~~~~GPlagI~aaL~~~~---~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 218 ENLPTLPDR------GESVGPISGILTALQSYP---GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred cCCeEEeCC------CCCCChHHHHHHHHHhCC---CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 002232211 223799999999987654 35789999999 66655 77777765
No 140
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.04 E-value=1e-09 Score=88.76 Aligned_cols=68 Identities=24% Similarity=0.449 Sum_probs=61.7
Q ss_pred ccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECC
Q 009971 396 ADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDK 474 (521)
Q Consensus 396 ~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~ 474 (521)
+.+.++.|+++|.|++ |.|.+++|++++.|+++|+|.+++++++ +.|++++++.+|+|++
T Consensus 12 ~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~-------------------~~i~~~~~v~~~ii~~ 72 (81)
T cd04652 12 TSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG-------------------AVIGEKCKLKDCLVGS 72 (81)
T ss_pred CEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC-------------------CEECCCCEEccCEECC
Confidence 3456788999999998 9999999999999999999999999887 6899999999999999
Q ss_pred CCEECCCc
Q 009971 475 NARIGDNV 482 (521)
Q Consensus 475 ~~~Ig~~~ 482 (521)
++.|++++
T Consensus 73 ~~~i~~~~ 80 (81)
T cd04652 73 GYRVEAGT 80 (81)
T ss_pred CcEeCCCC
Confidence 99998874
No 141
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.03 E-value=1.4e-09 Score=106.29 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=15.4
Q ss_pred eEECCCcEEceeEEeeeEECCCCEECCCCEEcceEE
Q 009971 401 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLL 436 (521)
Q Consensus 401 ~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i 436 (521)
+.||+||.|.. +++||.+|.||++|+|..+..
T Consensus 130 a~IGeGt~I~~----~a~IG~~v~IG~nv~I~~g~~ 161 (269)
T TIGR00965 130 AYVDEGTMVDT----WATVGSCAQIGKNVHLSGGVG 161 (269)
T ss_pred cEECCCCEECC----CcEECCCCEECCCCEEcCCcc
Confidence 34444444443 345555555555555544433
No 142
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.03 E-value=1.2e-09 Score=118.25 Aligned_cols=108 Identities=16% Similarity=0.192 Sum_probs=74.8
Q ss_pred CCceeecccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCcccccccc-ccccccCCCcceeeCCCC
Q 009971 389 PPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDAD-RRFLAAKGSVPIGIGKNS 465 (521)
Q Consensus 389 ~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~-~~~~~~~~~~~~~Ig~~~ 465 (521)
+++.+.++.+.+++|+++|.|+. |.+. +++||.++.||.++.+.++++.++..+..... ..+.||+++ .||.++
T Consensus 311 ~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~---~IG~~~ 387 (482)
T PRK14352 311 EGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTKVPHLTYVGDADIGEHS---NIGASS 387 (482)
T ss_pred CCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCcEEccCceecccEECCCc---EECCCc
Confidence 33333334456788999999998 8887 89999999999999888888877654432211 345666666 677777
Q ss_pred EEee--------eEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 466 HIKR--------AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 466 ~i~~--------~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
.+.+ ++||+++.||.++.|.. +.++|++++|++|
T Consensus 388 ~i~~~~~~~~~~~~IGd~~~iG~~~~i~~------~~~Ig~~~~igag 429 (482)
T PRK14352 388 VFVNYDGVNKHRTTIGSHVRTGSDTMFVA------PVTVGDGAYTGAG 429 (482)
T ss_pred EEeccccccCCCCeECCCcEECCCCEEeC------CCEECCCcEECCC
Confidence 6642 66777777777776665 4566667777777
No 143
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.02 E-value=1.5e-09 Score=102.45 Aligned_cols=99 Identities=12% Similarity=0.273 Sum_probs=69.5
Q ss_pred ECCCcEEce-eEE-eeeEECCCCEECCCCEEcce---EEECCccccccccccccccCCCcceeeCCCCEE-----eeeEE
Q 009971 403 IGEGCVIKN-CKI-HHSVVGLRSCISEGAIIEDT---LLMGADYYETDADRRFLAAKGSVPIGIGKNSHI-----KRAII 472 (521)
Q Consensus 403 Ig~~~~I~~-~~I-~~s~ig~~~~Ig~~~~I~~s---~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i-----~~~ii 472 (521)
|+++++|.. +.| .+++||++|.|+++|+|... ++++. + +.||++|+| .+++|
T Consensus 11 i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~---------------~---t~Ig~~~~I~~~~~~~siI 72 (192)
T TIGR02287 11 VHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKE---------------G---ANIQDNCVMHGFPGQDTVV 72 (192)
T ss_pred CCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECC---------------C---CEECCCeEEeccCCCCCeE
Confidence 455666654 333 36788888888888888642 33332 3 378888888 46888
Q ss_pred CCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 473 DKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 473 ~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
++++.||.+++|.+ ..+++.+.++.++.|..+ ++||+++.|++|++|
T Consensus 73 g~~~~Ig~~a~I~~-siIg~~~~IG~ga~I~~g-~~IG~~s~Vgags~V 119 (192)
T TIGR02287 73 EENGHVGHGAILHG-CIVGRNALVGMNAVVMDG-AVIGENSIVAASAFV 119 (192)
T ss_pred CCCCEECCCCEEcC-CEECCCCEECCCcccCCC-eEECCCCEEcCCCEE
Confidence 88888888887764 566666667777777777 778888888887754
No 144
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.02 E-value=1.1e-09 Score=118.22 Aligned_cols=119 Identities=14% Similarity=0.194 Sum_probs=82.4
Q ss_pred cceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCcccccccc-ccccccCCCcceeeCCCCEEe-eeEECC
Q 009971 399 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDAD-RRFLAAKGSVPIGIGKNSHIK-RAIIDK 474 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~-~~~~~~~~~~~~~Ig~~~~i~-~~ii~~ 474 (521)
.++.||++|.|++ |.|. ++.||++|+|+++|+|+++++++++.+...+. ..+.+|+++ .||+++.+. +++|++
T Consensus 269 ~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~---~ig~~~~i~~~~~Ig~ 345 (481)
T PRK14358 269 DTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGS---DVGPFARLRPGTVLGE 345 (481)
T ss_pred CCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCce---EECCccEEcCCcEECC
Confidence 4577899999987 8887 68899999999999999999998877654433 456677776 778888886 788888
Q ss_pred CCEECCCcEEeC-----CCccC-----CceeecCCeEEcCC------------eEEECCCCEECCCcc
Q 009971 475 NARIGDNVKIVN-----SDSVQ-----EAARETDGYFIKSG------------IVTIIKDALIPSGTI 520 (521)
Q Consensus 475 ~~~Ig~~~~i~~-----~~~~~-----~~~~~~~~~~I~~g------------~v~I~~~~~i~~gsv 520 (521)
++.|++++.|.+ ...++ ..+++|++|.|+.+ .++||+++.|+++++
T Consensus 346 ~~~Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~ 413 (481)
T PRK14358 346 GVHIGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTT 413 (481)
T ss_pred CCEECCCEEECCceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCE
Confidence 888888665432 11111 12334444444444 146677777777764
No 145
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.02 E-value=3.1e-09 Score=95.28 Aligned_cols=33 Identities=21% Similarity=0.462 Sum_probs=16.7
Q ss_pred ceEECCCcEEce-eEEe-eeEECCCCEECCCCEEc
Q 009971 400 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE 432 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~ 432 (521)
++.||++|.|+. +.|. ++.||++|.|++++.|.
T Consensus 31 ~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~ig 65 (139)
T cd03350 31 GAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIG 65 (139)
T ss_pred CCEECCCeEEcCCCEECCCCEECCCCEECCCCEEC
Confidence 345666666664 4443 34555555555555444
No 146
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.01 E-value=4.5e-09 Score=96.68 Aligned_cols=110 Identities=19% Similarity=0.202 Sum_probs=72.9
Q ss_pred ceEECCCcEEce-eEEee----eEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECC
Q 009971 400 DSVIGEGCVIKN-CKIHH----SVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDK 474 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~~----s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~ 474 (521)
+..||++|.|+. |.|.. +.||++|.|+++|+|.++....+.- .......|++++ .|++++.+.+++|++
T Consensus 21 ~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~---~~~~~v~Ig~~~---~Ig~~~~i~~~~Ig~ 94 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKG---VAFFPLHIGDYV---FIGENCVVNAAQIGS 94 (161)
T ss_pred CEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCC---ccccCeEECCcc---EECCCCEEEeeEEcC
Confidence 345666666665 55553 6999999999999998775433210 011345666666 789999999999999
Q ss_pred CCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEEC
Q 009971 475 NARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIP 516 (521)
Q Consensus 475 ~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~ 516 (521)
++.||++++|.....++..++++++++|.++ .+|+++++++
T Consensus 95 ~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~-~~i~~~~vv~ 135 (161)
T cd03359 95 YVHIGKNCVIGRRCIIKDCVKILDGTVVPPD-TVIPPYSVVS 135 (161)
T ss_pred CcEECCCCEEcCCCEECCCcEECCCCEECCC-CEeCCCCEEe
Confidence 9999999998775545554444444444444 4444444443
No 147
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.00 E-value=2.2e-09 Score=102.43 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=34.4
Q ss_pred cccCCCcccCCCCcCCCceee-cccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcc
Q 009971 374 FYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIED 433 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~ 433 (521)
.+++.+.+. .+.+++++.+. ++.+.+++||++|.|+. |.+.+++||.+|.|++++.|..
T Consensus 10 ~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~ 70 (204)
T TIGR03308 10 TLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINA 70 (204)
T ss_pred eECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECC
Confidence 444444442 24455555554 35555666666666665 6666666666666666666653
No 148
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=98.99 E-value=3.8e-09 Score=89.84 Aligned_cols=55 Identities=27% Similarity=0.461 Sum_probs=50.0
Q ss_pred eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeC
Q 009971 412 CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 412 ~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 486 (521)
+.|.+++||.+|.|+ ++.|++++++++ +.|+++++|.+++|++++.||+++.+.+
T Consensus 8 ~~i~~s~Ig~~~~I~-~~~I~~svi~~~-------------------~~Ig~~~~I~~siI~~~~~Ig~~~~i~~ 62 (104)
T cd04651 8 GEVKNSLVSEGCIIS-GGTVENSVLFRG-------------------VRVGSGSVVEDSVIMPNVGIGRNAVIRR 62 (104)
T ss_pred CEEEeEEECCCCEEc-CeEEEeCEEeCC-------------------CEECCCCEEEEeEEcCCCEECCCCEEEe
Confidence 445578999999999 999999999987 6899999999999999999999999964
No 149
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=98.99 E-value=2.5e-09 Score=97.42 Aligned_cols=102 Identities=15% Similarity=0.235 Sum_probs=77.8
Q ss_pred ECCCcEEce--eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-----eeEECCC
Q 009971 403 IGEGCVIKN--CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-----RAIIDKN 475 (521)
Q Consensus 403 Ig~~~~I~~--~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-----~~ii~~~ 475 (521)
|++.++|.+ ..|++..||+++.|+++++|..-. ..-.||+++ .|.+|++|+ .+.||++
T Consensus 14 i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~------------~~I~IG~~t---NIQDg~ViH~~~~~p~~IG~~ 78 (176)
T COG0663 14 IDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDV------------EPIRIGART---NIQDGVVIHADPGYPVTIGDD 78 (176)
T ss_pred CCCceEECCCCEEEEeEEECCCCEECCceEEEccC------------CceEECCCc---eecCCeEEecCCCCCeEECCC
Confidence 556666665 455689999999999999887432 122334444 677777775 3899999
Q ss_pred CEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 476 ARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 476 ~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
++||.+++|.+ ..+++.+.||-|+.|.+| ++||++|+|++|++|
T Consensus 79 vtIGH~aivHG-c~Ig~~~lIGmgA~vldg-a~IG~~~iVgAgalV 122 (176)
T COG0663 79 VTIGHGAVVHG-CTIGDNVLIGMGATVLDG-AVIGDGSIVGAGALV 122 (176)
T ss_pred cEEcCccEEEE-eEECCCcEEecCceEeCC-cEECCCcEEccCCcc
Confidence 99999999987 677777777777777777 889999999999876
No 150
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.98 E-value=2.2e-09 Score=100.80 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=19.7
Q ss_pred eeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 460 GIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 460 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
.||++++|. +++++.++.||++|+|.....+.++.++++++.|+.+
T Consensus 134 ~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~ 180 (197)
T cd03360 134 VIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAG 180 (197)
T ss_pred EECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCCCEECCC
Confidence 344444442 3444444444444444433223333444555555555
No 151
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.98 E-value=2.5e-09 Score=114.92 Aligned_cols=69 Identities=17% Similarity=0.279 Sum_probs=46.8
Q ss_pred cceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCC
Q 009971 399 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNA 476 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~ 476 (521)
.++.||++|.|++ |.|. +++||++|.|+++|+|.+++++++. .|++++++.+++|++++
T Consensus 267 ~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~-------------------~I~~~~~i~~~~i~~~~ 327 (459)
T PRK14355 267 RGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDV-------------------TVKAGSVLEDSVVGDDV 327 (459)
T ss_pred CCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCC-------------------EECCCeEEeCCEECCCC
Confidence 3566777788776 7776 6899999999999999988887763 45555555555555555
Q ss_pred EECCCcEEeC
Q 009971 477 RIGDNVKIVN 486 (521)
Q Consensus 477 ~Ig~~~~i~~ 486 (521)
.||+++.+..
T Consensus 328 ~ig~~~~i~~ 337 (459)
T PRK14355 328 AIGPMAHLRP 337 (459)
T ss_pred EECCCCEECC
Confidence 4444444433
No 152
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.98 E-value=3.1e-09 Score=98.07 Aligned_cols=59 Identities=24% Similarity=0.370 Sum_probs=29.2
Q ss_pred eeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 460 GIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 460 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
.||+++.+. ++.|.. +.||++|+|.....+.+++.++++++|+.+ ++|.++..|+++++
T Consensus 68 ~IG~~~~i~~~~~i~~-~~IGd~~~Ig~~a~I~~gv~Ig~~~~Igag-svV~~~~~i~~~~v 127 (164)
T cd04646 68 IIGSNNVFEVGCKCEA-LKIGNNNVFESKSFVGKNVIITDGCIIGAG-CKLPSSEILPENTV 127 (164)
T ss_pred EECCCCEECCCcEEEe-eEECCCCEEeCCCEECCCCEECCCCEEeCC-eEECCCcEECCCeE
Confidence 344444443 344432 555555555555555555555555555555 55555555555544
No 153
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.97 E-value=2.2e-09 Score=114.95 Aligned_cols=118 Identities=20% Similarity=0.203 Sum_probs=80.7
Q ss_pred ceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-eeEECCCC
Q 009971 400 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNA 476 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~ 476 (521)
++.||++|.|+. +.|. ++.||++|.|+++|.|.+++++++..+.......+.+++++ .||++++|. +++|++++
T Consensus 255 ~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~---~ig~~~~i~~~~~ig~~~ 331 (448)
T PRK14357 255 DVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDV---SVGPFSRLREGTVLKKSV 331 (448)
T ss_pred ceEECCCcEEcCCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCc---EECCCcEECCcccccCCc
Confidence 566777777776 6666 68888888888888888888877766654444677777777 788888885 68888888
Q ss_pred EECCCcEEeC-----CCccCC-----ceeecCCeEEcCC------------eEEECCCCEECCCcc
Q 009971 477 RIGDNVKIVN-----SDSVQE-----AARETDGYFIKSG------------IVTIIKDALIPSGTI 520 (521)
Q Consensus 477 ~Ig~~~~i~~-----~~~~~~-----~~~~~~~~~I~~g------------~v~I~~~~~i~~gsv 520 (521)
+||+++.+.+ ...++. ...+|+++.|+.| .++||+++.|+++++
T Consensus 332 ~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~ 397 (448)
T PRK14357 332 KIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSS 397 (448)
T ss_pred EecCceeeeccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCE
Confidence 8888766532 111111 2345566666543 156777777777764
No 154
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.96 E-value=4.5e-09 Score=84.84 Aligned_cols=62 Identities=21% Similarity=0.394 Sum_probs=51.5
Q ss_pred EECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCC
Q 009971 402 VIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDN 481 (521)
Q Consensus 402 ~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~ 481 (521)
.|++++.|+ .+++||++|.||++|+|++++++++ +.|+++++|.++++++++.|+++
T Consensus 7 ~I~~~~~i~----~~~~Ig~~~~Ig~~~~i~~sii~~~-------------------~~i~~~~~i~~sii~~~~~v~~~ 63 (80)
T cd05824 7 KIGKTAKIG----PNVVIGPNVTIGDGVRLQRCVILSN-------------------STVRDHSWVKSSIVGWNSTVGRW 63 (80)
T ss_pred EECCCCEEC----CCCEECCCCEECCCcEEeeeEEcCC-------------------CEECCCCEEeCCEEeCCCEECCC
Confidence 344444444 3789999999999999999999887 68999999999999999999999
Q ss_pred cEEeC
Q 009971 482 VKIVN 486 (521)
Q Consensus 482 ~~i~~ 486 (521)
+.+.+
T Consensus 64 ~~~~~ 68 (80)
T cd05824 64 TRLEN 68 (80)
T ss_pred cEEec
Confidence 88865
No 155
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.95 E-value=4.2e-09 Score=113.16 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=72.5
Q ss_pred cCCCceeecccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCcccccccc-ccccccCCCcceeeCC
Q 009971 387 YLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDAD-RRFLAAKGSVPIGIGK 463 (521)
Q Consensus 387 ~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~-~~~~~~~~~~~~~Ig~ 463 (521)
+..++.+..+.+.+++||++|.|+. |.|. +++||++|.|++++.|.++++.++........ ..+.||+++ .||.
T Consensus 303 ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~---~ig~ 379 (458)
T PRK14354 303 IGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENV---NIGC 379 (458)
T ss_pred ECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCce---EEcC
Confidence 3444444445557789999999998 8888 79999999999999999888776543222111 223333333 3444
Q ss_pred CCEEeee--EECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECC
Q 009971 464 NSHIKRA--IIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 511 (521)
Q Consensus 464 ~~~i~~~--ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~ 511 (521)
++.+.+- .-...++||+++++.....+..+.+++++++|+.| .+|.+
T Consensus 380 ~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~-~~v~~ 428 (458)
T PRK14354 380 GTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAG-STITK 428 (458)
T ss_pred ceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCEECCC-CEECC
Confidence 4333210 00013455555555555555556677777777777 44433
No 156
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=98.94 E-value=5.4e-09 Score=102.25 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=26.7
Q ss_pred CCCcCCCceeecccccceEECCCcEEceeEEe-eeEECCCCEECCCCEEcceEEEC
Q 009971 384 QPRYLPPSKMLDADVTDSVIGEGCVIKNCKIH-HSVVGLRSCISEGAIIEDTLLMG 438 (521)
Q Consensus 384 ~~~~~~~~~i~~~~i~~~~Ig~~~~I~~~~I~-~s~ig~~~~Ig~~~~I~~s~i~~ 438 (521)
..++.|++.+. .++.||++++|....|. ++.||++|.|+.++.|+.++.+|
T Consensus 100 ~~rv~p~a~i~----~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG 151 (269)
T TIGR00965 100 GFRVVPGAAVR----QGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIG 151 (269)
T ss_pred CEEECCCcEEC----CCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEEC
Confidence 44556655442 24556666666643333 45556666555555555444433
No 157
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=98.93 E-value=1e-08 Score=101.15 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=18.1
Q ss_pred eEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 470 AIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 470 ~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
++|+++|.||.++.|..+..+++++.++.+++|..+
T Consensus 177 viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~g 212 (272)
T PRK11830 177 VIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQS 212 (272)
T ss_pred eEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCC
Confidence 555666666666555544444444444444444444
No 158
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.93 E-value=6.3e-09 Score=94.86 Aligned_cols=88 Identities=18% Similarity=0.292 Sum_probs=53.4
Q ss_pred eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEee-----eEECCCCEECCCcEEeCCCcc
Q 009971 416 HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR-----AIIDKNARIGDNVKIVNSDSV 490 (521)
Q Consensus 416 ~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~-----~ii~~~~~Ig~~~~i~~~~~~ 490 (521)
+..||+++.|+++++|.++. ..+.||++ +.|+++++|.. ++|++++.|+.++.+.+ ..+
T Consensus 17 ~v~ig~~~~I~~~~~I~~~~------------~~~~IG~~---~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~-~~I 80 (153)
T cd04645 17 DVTLGEGSSVWFGAVLRGDV------------NPIRIGER---TNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHG-CTI 80 (153)
T ss_pred eEEECCCcEEcCCeEEECCC------------CceEECCC---CEECCCcEEecCCCCCeEEcCCcEECCCcEEee-eEE
Confidence 56777777777777666431 01112222 36777777764 47777777777777754 445
Q ss_pred CCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 491 QEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 491 ~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
++.+.++.++.+..+ ++|++++.|+++++
T Consensus 81 g~~~~Ig~~~~v~~~-~~ig~~~~ig~~~~ 109 (153)
T cd04645 81 GDNCLIGMGAIILDG-AVIGKGSIVAAGSL 109 (153)
T ss_pred CCCCEECCCCEEcCC-CEECCCCEECCCCE
Confidence 555556656666555 66666766666654
No 159
>PLN02472 uncharacterized protein
Probab=98.93 E-value=6.4e-09 Score=101.69 Aligned_cols=99 Identities=11% Similarity=0.237 Sum_probs=71.9
Q ss_pred ECCCcEEce-eEE-eeeEECCCCEECCCCEEcce---EEECCccccccccccccccCCCcceeeCCCCEEe---------
Q 009971 403 IGEGCVIKN-CKI-HHSVVGLRSCISEGAIIEDT---LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK--------- 468 (521)
Q Consensus 403 Ig~~~~I~~-~~I-~~s~ig~~~~Ig~~~~I~~s---~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~--------- 468 (521)
|+.+++|.. +.+ .++.||+++.|+++++|.+. +.+|. + +.|+++|+|+
T Consensus 62 i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~---------------~---t~Ig~~~vI~~~~~~~~~i 123 (246)
T PLN02472 62 VAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGF---------------C---SNVQERCVLHAAWNSPTGL 123 (246)
T ss_pred cCCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECC---------------C---CEECCCCEEeecCccccCC
Confidence 344555554 333 36788888888888877643 44443 3 3788888884
Q ss_pred --eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 469 --RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 469 --~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
+++|+++|.||++++|. ...+++.+.||.+++|..| ++|+++++|++|++|
T Consensus 124 ~~~tvIG~~v~IG~~s~L~-~~~Igd~v~IG~~svI~~g-avIg~~~~Ig~gsvV 176 (246)
T PLN02472 124 PAETLIDRYVTIGAYSLLR-SCTIEPECIIGQHSILMEG-SLVETHSILEAGSVL 176 (246)
T ss_pred CCCcEECCCCEECCCcEEC-CeEEcCCCEECCCCEECCC-CEECCCCEECCCCEE
Confidence 58999999999999885 4667777888888888888 788888888888764
No 160
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.93 E-value=8e-08 Score=97.93 Aligned_cols=212 Identities=16% Similarity=0.195 Sum_probs=127.4
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCC--CcchhHHHHHHhHhCC-----------CceEEEEec-CChHHHHHH
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA--NYRLIDIPVSNCLNSN-----------ISKIYVLTQ-FNSASLNRH 153 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G--~~pLI~~~l~~l~~~g-----------i~~I~Iv~~-~~~~~i~~~ 153 (521)
.++.+||||||.|||| +...||+|+||++ ++|++++.++.+...+ .-.++|.++ +..+.+.+|
T Consensus 14 ~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~~ 90 (323)
T cd04193 14 GKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRKF 90 (323)
T ss_pred CCEEEEEECCCccccc---CCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHHH
Confidence 4689999999999999 4788999999973 2499999999998732 124567777 667899999
Q ss_pred HHHhhhccCCC----CcCCCcEEEeeccc-----CCCCCCC-CCChHHHHHHH-----HHHhhhcCcceEEEEeCCe-ec
Q 009971 154 LSRAYASNMGG----YKNEGFVEVLAAQQ-----SPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDH-LY 217 (521)
Q Consensus 154 l~~~~~~~~~~----~~~~~~v~vl~~~q-----~~~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~-l~ 217 (521)
+.+...|++.. .+.+..+..+.... ++....| +.|.++-.... ++.+.....+++.+.+.|. +.
T Consensus 91 ~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~ 170 (323)
T cd04193 91 FKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILV 170 (323)
T ss_pred HHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcccc
Confidence 99854443311 11122222211110 0011112 56777654433 2233334678999999999 45
Q ss_pred cccHHHHHHHHHhcCCcEEEEEEecCcccCcceeEEE-eCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCce
Q 009971 218 RMDYERFIQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYI 296 (521)
Q Consensus 218 ~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~-~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l 296 (521)
..--..++-.+.++++++.+-+.+....+ ..-|.+. .|..-.++++.|-|....... . +.. ....+.
T Consensus 171 ~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~-ekvG~l~~~~g~~~vvEysel~~~~~~~~-~-~~g---------~l~f~~ 238 (323)
T cd04193 171 KVADPVFIGFCISKGADVGAKVVRKRYPT-EKVGVVVLVDGKPQVVEYSEISDELAEKR-D-ADG---------ELQYNA 238 (323)
T ss_pred cccCHHHhHHHHHcCCceEEEEEECCCCC-CceeEEEEECCeEEEEEeecCCHHHHhcc-C-cCC---------cEeccc
Confidence 43234477788888999887665543222 2345444 343446888888765543211 0 000 001123
Q ss_pred eeEEEEEEeHHHHHHHHh
Q 009971 297 ASMGIYVISKDVMLNLLR 314 (521)
Q Consensus 297 ~~~GIyifs~~vl~~ll~ 314 (521)
.++.+.+|+-++++++++
T Consensus 239 ~ni~~~~fsl~fl~~~~~ 256 (323)
T cd04193 239 GNIANHFFSLDFLEKAAE 256 (323)
T ss_pred chHhhheeCHHHHHHHHh
Confidence 455677899888887765
No 161
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.93 E-value=6.5e-09 Score=111.29 Aligned_cols=128 Identities=13% Similarity=0.132 Sum_probs=76.8
Q ss_pred ccCCCcccCCCCcCCCceee-cccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccc-cccc
Q 009971 375 YDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDA-DRRF 450 (521)
Q Consensus 375 ~~~~~~i~~~~~~~~~~~i~-~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~-~~~~ 450 (521)
+.+.+.|...+.+..++.+. ++.+.+++||++|.|+. |.|. +++||++|.||++|.|.++++..+....... ...+
T Consensus 277 i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~ 356 (446)
T PRK14353 277 IEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDA 356 (446)
T ss_pred ECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCc
Confidence 33444444444455555553 45566799999999998 8888 8999999999999999887777653321111 1234
Q ss_pred cccCCCcceeeCCCCEEeee--EECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 451 LAAKGSVPIGIGKNSHIKRA--IIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 451 ~~~~~~~~~~Ig~~~~i~~~--ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
.||+++ .||.++++.+. ....++.||++++|+....+..+.++|++++|++|
T Consensus 357 ~ig~~~---~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~ 410 (446)
T PRK14353 357 TIGAGA---NIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASG 410 (446)
T ss_pred EEcCCc---EECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCC
Confidence 444444 45555544110 00224444444444444444455677777777777
No 162
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.93 E-value=3.8e-09 Score=113.24 Aligned_cols=115 Identities=20% Similarity=0.218 Sum_probs=83.6
Q ss_pred CCCceeecccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCC
Q 009971 388 LPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNS 465 (521)
Q Consensus 388 ~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~ 465 (521)
..++.+..+.+.+++||++|.|++ |.|. +++||.+|.||+++.|.++++..+..+.. .+.++ . +.||++|
T Consensus 301 ~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~----~~~~~--~--~~i~~~~ 372 (450)
T PRK14360 301 GENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNH----LSYIG--D--ATLGEQV 372 (450)
T ss_pred cCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEecc----ceecC--C--ceecCCc
Confidence 344444444456788999999998 8887 79999999999999999988877654332 12221 1 3466666
Q ss_pred EEe-eeEE-------CCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECC
Q 009971 466 HIK-RAII-------DKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIK 511 (521)
Q Consensus 466 ~i~-~~ii-------~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~ 511 (521)
.|. ++++ +.+++||++|+|+....+..+.+++++++|++| ++|-+
T Consensus 373 ~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~-~~v~~ 425 (450)
T PRK14360 373 NIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAG-STITK 425 (450)
T ss_pred EECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCC-CEECc
Confidence 665 4444 347899999999988888888999999999998 44443
No 163
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=98.90 E-value=1.1e-08 Score=93.42 Aligned_cols=95 Identities=18% Similarity=0.242 Sum_probs=56.0
Q ss_pred EECCCcEEceeEEeeeEECCCCEECCCCEEcce---EEECCccccccccccccccCCCcceeeCCCCEEee-----eEEC
Q 009971 402 VIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDT---LLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR-----AIID 473 (521)
Q Consensus 402 ~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s---~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~-----~ii~ 473 (521)
+|.++++|. .++.||++|.|+++|.|... +.+++ + +.|+++|.|.. ++|+
T Consensus 8 ~i~~~~~i~----~~v~iG~~~~I~~~a~I~~~~~~i~Ig~---------------~---~~Ig~~~~I~~~~~~~~~Ig 65 (154)
T cd04650 8 YVHPTSYVI----GDVVIGELTSVWHYAVIRGDNDSIYIGK---------------Y---SNVQENVSIHTDHGYPTEIG 65 (154)
T ss_pred EECCCCEEE----eeEEECCCCEEcCCeEEEcCCCcEEECC---------------C---CEECCCCEEEeCCCCCeEEC
Confidence 344444443 35677777777777777654 33332 1 36666666653 6677
Q ss_pred CCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 474 KNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 474 ~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
+++.|+.++++.+ ..+++.+.++.++.+..+ ++|++++.|++++.
T Consensus 66 ~~~~I~~~~~i~~-~~Ig~~~~Ig~~~~i~~~-~~Ig~~~~vg~~~~ 110 (154)
T cd04650 66 DYVTIGHNAVVHG-AKVGNYVIVGMGAILLNG-AKIGDHVIIGAGAV 110 (154)
T ss_pred CCCEECCCcEEEC-cEECCCCEEcCCCEEeCC-CEECCCCEECCCCE
Confidence 7777777776643 345555555555555555 55666666665553
No 164
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.89 E-value=7.8e-09 Score=83.04 Aligned_cols=67 Identities=25% Similarity=0.401 Sum_probs=58.2
Q ss_pred cccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEee-eEE
Q 009971 395 DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR-AII 472 (521)
Q Consensus 395 ~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~-~ii 472 (521)
++.+.+++||++|.|++ +.|.+++|++++.|+++|.|.+++++++ +.|++++.+.+ +++
T Consensus 11 ~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~-------------------~~i~~~~~i~~~~~i 71 (79)
T cd03356 11 NAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN-------------------AVIGENVRVVNLCII 71 (79)
T ss_pred CCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC-------------------CEECCCCEEcCCeEE
Confidence 34456788999999997 9999999999999999999999998876 58999999986 888
Q ss_pred CCCCEECC
Q 009971 473 DKNARIGD 480 (521)
Q Consensus 473 ~~~~~Ig~ 480 (521)
+++++|++
T Consensus 72 g~~~~i~~ 79 (79)
T cd03356 72 GDDVVVED 79 (79)
T ss_pred CCCeEECc
Confidence 88888874
No 165
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.89 E-value=2.1e-08 Score=94.89 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=20.0
Q ss_pred eeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 460 GIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 460 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
.|+.++.+. ++.|++++.||.++++.. +..+++++.|+++
T Consensus 143 ~i~~~~~i~~~~~ig~~~~ig~~~~v~~------~~~i~~~~~i~~~ 183 (201)
T TIGR03570 143 HIAPGVTLSGGVVIGEGVFIGAGATIIQ------GVTIGAGAIVGAG 183 (201)
T ss_pred EECCCCEEeCCcEECCCCEECCCCEEeC------CCEECCCCEECCC
Confidence 445555544 455555555555555543 3444555555555
No 166
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.89 E-value=1.3e-08 Score=91.26 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=22.6
Q ss_pred eEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEEC
Q 009971 401 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMG 438 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~ 438 (521)
+.|+.++.|++ +.|. ++.|+.++.||++|.|.....++
T Consensus 26 ~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~ig 65 (139)
T cd03350 26 SYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIG 65 (139)
T ss_pred CEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEEC
Confidence 45566666665 5555 46666666666666665554444
No 167
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.88 E-value=9.9e-09 Score=89.09 Aligned_cols=68 Identities=21% Similarity=0.302 Sum_probs=46.6
Q ss_pred ceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCE
Q 009971 400 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNAR 477 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~ 477 (521)
+++||++|.|+. +.|. +++||++|.|++++.|.+..+.+. .+..++.+.+++|+++|.
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~--------------------~~~~~~~~~~~~Ig~~~~ 75 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRS--------------------KIYRKWELKGTTVKRGAS 75 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCcc--------------------ccccccccCCcEECCCcE
Confidence 466788888875 6664 677777777777777766554442 344566777788888888
Q ss_pred ECCCcEEeCC
Q 009971 478 IGDNVKIVNS 487 (521)
Q Consensus 478 Ig~~~~i~~~ 487 (521)
||.++.+...
T Consensus 76 Ig~~~~v~~~ 85 (119)
T cd03358 76 IGANATILPG 85 (119)
T ss_pred ECcCCEEeCC
Confidence 8888777653
No 168
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=3.8e-09 Score=105.89 Aligned_cols=90 Identities=21% Similarity=0.286 Sum_probs=80.6
Q ss_pred CcccCCCCcCCCceee-cccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCC
Q 009971 379 APIYTQPRYLPPSKML-DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGS 456 (521)
Q Consensus 379 ~~i~~~~~~~~~~~i~-~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~ 456 (521)
+.+..++.+.+.+++. ++.|+.|+||++|.||+ ++|.+|+|.+++.||+||.|++|+|..+
T Consensus 329 ~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~g----------------- 391 (433)
T KOG1462|consen 329 ALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMG----------------- 391 (433)
T ss_pred eccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceecceeccc-----------------
Confidence 5566677888888887 77889999999999998 9999999999999999999999999886
Q ss_pred cceeeCCCCEEeeeEECCCCEECCCcEEeCC
Q 009971 457 VPIGIGKNSHIKRAIIDKNARIGDNVKIVNS 487 (521)
Q Consensus 457 ~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~ 487 (521)
+.||++|.+.+|+|+.+-+|.+.....+.
T Consensus 392 --A~Ig~gs~L~nC~Ig~~yvVeak~~~~~e 420 (433)
T KOG1462|consen 392 --AQIGSGSKLKNCIIGPGYVVEAKGKHGGE 420 (433)
T ss_pred --ceecCCCeeeeeEecCCcEEccccccccc
Confidence 58999999999999999999977766653
No 169
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=98.88 E-value=1.6e-08 Score=93.64 Aligned_cols=71 Identities=23% Similarity=0.303 Sum_probs=35.5
Q ss_pred eEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEEC
Q 009971 401 SVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIG 479 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig 479 (521)
+.||++|.|+. +.+. ...+..+.||++|.|.....+.. .+.||+++ .||.++.|.++.|+++|.||
T Consensus 43 v~IG~~~~I~~~~~i~-~~~~~~v~Ig~~~~I~~~~~i~g---------~~~Ig~~~---~Ig~~~~I~~~~Ig~~~~Ig 109 (167)
T cd00710 43 IIIGANVNIQDGVVIH-ALEGYSVWIGKNVSIAHGAIVHG---------PAYIGDNC---FIGFRSVVFNAKVGDNCVIG 109 (167)
T ss_pred EEECCCCEECCCeEEE-ecCCCCEEECCCceECCCCEEeC---------CEEECCCC---EECCCCEEECCEECCCCEEc
Confidence 44555555553 2221 11144556666666655433321 23444444 55555666556666666666
Q ss_pred CCcEE
Q 009971 480 DNVKI 484 (521)
Q Consensus 480 ~~~~i 484 (521)
.++.|
T Consensus 110 ~~s~i 114 (167)
T cd00710 110 HNAVV 114 (167)
T ss_pred CCCEE
Confidence 66555
No 170
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.88 E-value=9.1e-09 Score=97.23 Aligned_cols=133 Identities=21% Similarity=0.223 Sum_probs=78.1
Q ss_pred ccCCCCcCCCceee-cccccc-eEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCC
Q 009971 381 IYTQPRYLPPSKML-DADVTD-SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGS 456 (521)
Q Consensus 381 i~~~~~~~~~~~i~-~~~i~~-~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~ 456 (521)
|.+++.++|++++. +.+|+. |+||++++|++ +.|. |++|--.++||.+++|...-.+|.+- ....-....
T Consensus 6 IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~p------QdlKykge~ 79 (260)
T COG1043 6 IHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDP------QDLKYKGEP 79 (260)
T ss_pred cCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCC------cccccCCCc
Confidence 34444444544442 222333 66666666665 6666 66666667777777776666555432 011111111
Q ss_pred cceeeCCCCEEe-eeEE------C-CCCEECCCcEEeCCCccCCceeecCCeEEcCCe-----EEECCCCEECCCc
Q 009971 457 VPIGIGKNSHIK-RAII------D-KNARIGDNVKIVNSDSVQEAARETDGYFIKSGI-----VTIIKDALIPSGT 519 (521)
Q Consensus 457 ~~~~Ig~~~~i~-~~ii------~-~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~-----v~I~~~~~i~~gs 519 (521)
.-+.||+++.|+ .+.| | .-++||+++.+..+.++..+|++|++|++..+. |.|++.++||..|
T Consensus 80 T~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~s 155 (260)
T COG1043 80 TRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLS 155 (260)
T ss_pred eEEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcc
Confidence 124566666665 3333 2 245788888888888888888888888887773 6677777776654
No 171
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.88 E-value=8.8e-09 Score=82.54 Aligned_cols=78 Identities=28% Similarity=0.350 Sum_probs=60.2
Q ss_pred EECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeCCCccCCceeec
Q 009971 418 VVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARET 497 (521)
Q Consensus 418 ~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~ 497 (521)
+||+++.|+++|.|.++++..+ +.|+++++|.+++|++++.|+++++|. ...+.+.++++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~-------------------~~ig~~~~i~~s~i~~~~~i~~~~~i~-~~~i~~~~~i~ 60 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVIGRN-------------------CKIGKNVVIDNSYIWDDVTIEDGCTIH-HSIVADGAVIG 60 (79)
T ss_pred CccCCCEECCCCEEeccEECCC-------------------CEECCCCEEeCcEEeCCCEECCCCEEe-CcEEcCCCEEC
Confidence 4789999999999998877765 689999999999999999999999996 34455555555
Q ss_pred CCeEEcCCeEEECCCCEEC
Q 009971 498 DGYFIKSGIVTIIKDALIP 516 (521)
Q Consensus 498 ~~~~I~~g~v~I~~~~~i~ 516 (521)
.+++|+.+ ++|++++.||
T Consensus 61 ~~~~i~~~-~~v~~~~~ig 78 (79)
T cd05787 61 KGCTIPPG-SLISFGVVIG 78 (79)
T ss_pred CCCEECCC-CEEeCCcEeC
Confidence 55555555 5555555554
No 172
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.87 E-value=1.4e-08 Score=96.07 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=11.9
Q ss_pred cCCeEEcCCeEEECCCCEECCCcc
Q 009971 497 TDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 497 ~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
+.++.+..+ ++|+++++|++|++
T Consensus 163 g~~~~v~~~-~~i~~~~~i~~~~~ 185 (201)
T TIGR03570 163 GAGATIIQG-VTIGAGAIVGAGAV 185 (201)
T ss_pred CCCCEEeCC-CEECCCCEECCCCE
Confidence 334555555 55555555555554
No 173
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.86 E-value=1.4e-08 Score=108.08 Aligned_cols=117 Identities=18% Similarity=0.245 Sum_probs=67.0
Q ss_pred cccCCCcccCCC-----CcCCCceeecccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCcccccccc
Q 009971 374 FYDRSAPIYTQP-----RYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDAD 447 (521)
Q Consensus 374 ~~~~~~~i~~~~-----~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~ 447 (521)
++++.+.|+..+ .+.+++.+.++.+.+++||++|.|++ |.|.+|.||++|.|+... |.++.+....+.
T Consensus 267 ~ig~~~~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~-~~~~~i~~~~~i----- 340 (430)
T PRK14359 267 ELEEGVRILGKSKIENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAK-LNGVKAGHLSYL----- 340 (430)
T ss_pred EECCCCEECCCeEEEeeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcccE-eccccccccccc-----
Confidence 444444444433 34555555455566788888888886 777777777777666633 344333332221
Q ss_pred ccccccCCCcceeeCCCCEEe--------eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 448 RRFLAAKGSVPIGIGKNSHIK--------RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 448 ~~~~~~~~~~~~~Ig~~~~i~--------~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
..+.||+++ .||.++.+. .++||++|.||.++.|. .+.++|++++|++|
T Consensus 341 ~d~~Ig~~~---~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~------~~~~ig~~~~i~~g 397 (430)
T PRK14359 341 GDCEIDEGT---NIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLV------APVNIEDNVLIAAG 397 (430)
T ss_pred cCCEECCCC---EECCCceEccccCccCcCCEECCCeEEcCCCEEe------CCcEECCCCEECCC
Confidence 234455555 555555543 14555555555555554 56777778888888
No 174
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.82 E-value=1.4e-07 Score=87.95 Aligned_cols=220 Identities=19% Similarity=0.215 Sum_probs=139.3
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCChHHHHHHHHHhhhccCCCC
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (521)
||+.-|||+|.|.++|.. .|-+.+++|+ |||.|+|+++.+++ |++|+|-+ +++.|.+.-.+ |..+
T Consensus 1 ~~~~iAiIpAR~gSKgI~------~KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A~~-ygak---- 66 (228)
T COG1083 1 MMKNIAIIPARGGSKGIK------NKNIRKFGGK-PLIGYTIEAALNSKLFDKVVISS--DSEEILEEAKK-YGAK---- 66 (228)
T ss_pred CcceEEEEeccCCCCcCC------ccchHHhCCc-chHHHHHHHHhcCCccceEEEcC--CcHHHHHHHHH-hCcc----
Confidence 457789999999999886 3999999987 99999999999998 78888776 55555554443 2111
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-e-ccccHHHHHHHHHhcCCcEEEEEEecC
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-L-YRMDYERFIQAHRETDADITVAALPMD 243 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l-~~~dl~~ll~~h~~~~aditi~~~~~~ 243 (521)
+-+..+.....+ ...|.+++.+++..+.. ..+.++.+.+-. | ...++++.++.+.+++.+-.+.+.+.+
T Consensus 67 -----~~~~Rp~~LA~D---~ast~~~~lh~le~~~~-~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e 137 (228)
T COG1083 67 -----VFLKRPKELASD---RASTIDAALHALESFNI-DEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECE 137 (228)
T ss_pred -----ccccCChhhccC---chhHHHHHHHHHHHhcc-ccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeecc
Confidence 111111111111 02344455555555543 234477777776 4 456799999999988888777777765
Q ss_pred cccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCCh
Q 009971 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (521)
Q Consensus 244 ~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~ 323 (521)
...-..| .. .+|.+..+-+.+.... +..++ -..|..+..+|+++++.|. ++ ..-|
T Consensus 138 ~~p~k~f---~~-~~~~~~~~~~~~~~~~-rrQ~L-------------pk~Y~~NgaiYi~~~~~l~---e~----~~~f 192 (228)
T COG1083 138 HHPYKAF---SL-NNGEVKPVNEDPDFET-RRQDL-------------PKAYRENGAIYINKKDALL---EN----DCFF 192 (228)
T ss_pred cchHHHH---Hh-cCCceeecccCCcccc-ccccc-------------hhhhhhcCcEEEehHHHHh---hc----Ccee
Confidence 4221222 22 3477777776654321 11111 1246778899999998764 21 1112
Q ss_pred hhcchHhhhhCCceEEEEEec-ceEEecCCHHHHHHHhhhccc
Q 009971 324 GSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITK 365 (521)
Q Consensus 324 ~~dil~~li~~~~~I~~~~~~-g~w~dIgt~edy~~An~~ll~ 365 (521)
+.+...|..+ ....||++..|+..|+..+..
T Consensus 193 -----------~~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~ 224 (228)
T COG1083 193 -----------IPNTILYEMPEDESIDIDTELDLEIAENLIFL 224 (228)
T ss_pred -----------cCCceEEEcCcccccccccHHhHHHHHHHhhh
Confidence 2344556665 458999999999999887654
No 175
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.81 E-value=4e-07 Score=96.98 Aligned_cols=211 Identities=17% Similarity=0.171 Sum_probs=124.9
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecC---CCcchhHHHHHHhHhC------------C-CceEEEEe-cCChHHH
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRLIDIPVSNCLNS------------N-ISKIYVLT-QFNSASL 150 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~---G~~pLI~~~l~~l~~~------------g-i~~I~Iv~-~~~~~~i 150 (521)
.++.+||||||.||||+ ...||+|+||+ |+ ||+++.++++... + .-.++|.+ .+..+.+
T Consensus 105 gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t 180 (482)
T PTZ00339 105 GEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQT 180 (482)
T ss_pred CCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHH
Confidence 46999999999999997 58999999994 55 9999999999764 1 12445554 4677899
Q ss_pred HHHHHHhhhccCCC----CcCCCcEEEeecc-c-----CCCCCCC-CCChHHHHHHH-----HHHhhhcCcceEEEEeCC
Q 009971 151 NRHLSRAYASNMGG----YKNEGFVEVLAAQ-Q-----SPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGD 214 (521)
Q Consensus 151 ~~~l~~~~~~~~~~----~~~~~~v~vl~~~-q-----~~~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD 214 (521)
.+|+.+...+++.. .|.++.+..+... . .+..-.| +.|.++-.... ++.+.....+++.+.+.|
T Consensus 181 ~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD 260 (482)
T PTZ00339 181 RQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISID 260 (482)
T ss_pred HHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecC
Confidence 99998744343211 1122212211110 0 0000112 45776644432 233344467889999999
Q ss_pred ee-ccccHHHHHHHHHhcCC-cEEEEEEecCcccCcceeEEEe-CCCCCeEEeeeCCChhhhhhcccccccccCCchhhc
Q 009971 215 HL-YRMDYERFIQAHRETDA-DITVAALPMDEKRATAFGLMKI-DEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAK 291 (521)
Q Consensus 215 ~l-~~~dl~~ll~~h~~~~a-diti~~~~~~~~~~~~~g~v~~-d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~ 291 (521)
.+ ...--..++-++.+.++ ++.-.+.+... ...-|++.. |..-.|+++.|-++..... .. .....
T Consensus 261 N~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~--~EkvG~~~~~~g~~~vvEYsEi~~~~~~~-~~---------~~~g~ 328 (482)
T PTZ00339 261 NILAKVLDPEFIGLASSFPAHDVLNKCVKRED--DESVGVFCLKDYEWQVVEYTEINERILNN-DE---------LLTGE 328 (482)
T ss_pred cccccccCHHHhHHHHHCCchhheeeeecCCC--CCceeEEEEeCCcccEEEEeccChhhhhc-cc---------ccCCe
Confidence 95 54323346677777777 65444433322 234566654 3333689998866543211 00 00001
Q ss_pred cCCceeeEEEEEEeHHHHHHHHh
Q 009971 292 EMPYIASMGIYVISKDVMLNLLR 314 (521)
Q Consensus 292 ~~~~l~~~GIyifs~~vl~~ll~ 314 (521)
..-...++..++|+-+++.++..
T Consensus 329 l~f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 329 LAFNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred ecccccceEEEEEEHHHHHHHhh
Confidence 11246788999999999987653
No 176
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=98.81 E-value=2.6e-08 Score=96.89 Aligned_cols=60 Identities=23% Similarity=0.277 Sum_probs=40.2
Q ss_pred cccCCCcccCCCCcCCCceee-cccc-cceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcc
Q 009971 374 FYDRSAPIYTQPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIED 433 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~-~~~i-~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~ 433 (521)
.+++.+.+...+.+.+.+.+. ++.+ .+++||++|.|+. +.|. +++||++|.||.++.|.+
T Consensus 88 ~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~ 151 (231)
T TIGR03532 88 RIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAG 151 (231)
T ss_pred EECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEcc
Confidence 445555555555555555554 3444 3578888888886 7775 788888888888887765
No 177
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.80 E-value=4.3e-08 Score=87.06 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=12.0
Q ss_pred eeCCCCEEeeeEECCCCEECCCcEEeC
Q 009971 460 GIGKNSHIKRAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 460 ~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 486 (521)
.||.++.| +..|++++.||+++++..
T Consensus 81 ~IG~ga~I-gv~IG~~~vIGaGsvV~k 106 (147)
T cd04649 81 LLGANSGI-GISLGDNCIVEAGLYVTA 106 (147)
T ss_pred EECCCCEE-eEEECCCCEECCCCEEeC
Confidence 44444444 344444444444444443
No 178
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.75 E-value=5.6e-08 Score=78.39 Aligned_cols=63 Identities=14% Similarity=0.347 Sum_probs=54.9
Q ss_pred cceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEee-eEECCCC
Q 009971 399 TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKR-AIIDKNA 476 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~-~ii~~~~ 476 (521)
.+++|+++|.|++ |.|.+++|++++.|++++.|.+++++.+ +.|++++.+.+ ++|++++
T Consensus 16 ~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~-------------------~~v~~~~~~~~~~~ig~~~ 76 (80)
T cd05824 16 PNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN-------------------STVGRWTRLENVTVLGDDV 76 (80)
T ss_pred CCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC-------------------CEECCCcEEecCEEECCce
Confidence 3578899999987 9999999999999999999999999876 58999999985 8888887
Q ss_pred EECC
Q 009971 477 RIGD 480 (521)
Q Consensus 477 ~Ig~ 480 (521)
+||+
T Consensus 77 ~i~~ 80 (80)
T cd05824 77 TIKD 80 (80)
T ss_pred EECC
Confidence 7764
No 179
>PLN02694 serine O-acetyltransferase
Probab=98.74 E-value=3.6e-08 Score=97.45 Aligned_cols=78 Identities=23% Similarity=0.336 Sum_probs=42.3
Q ss_pred EECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEE-eeeEECCCCEECC
Q 009971 402 VIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHI-KRAIIDKNARIGD 480 (521)
Q Consensus 402 ~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i-~~~ii~~~~~Ig~ 480 (521)
.||+|++|.+. .+++||++|.||++|.|..++.+++..- ....+...||+++ .||.++.| .++.||++|.||+
T Consensus 168 ~IG~gv~Idh~--tGVVIGe~a~IGdnv~I~~~VtLGg~g~-~~~~r~piIGd~V---~IGagA~Ilggi~IGd~a~IGA 241 (294)
T PLN02694 168 KIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTGK-ACGDRHPKIGDGV---LIGAGATILGNVKIGEGAKIGA 241 (294)
T ss_pred eecCCEEEeCC--CCeEECCCcEECCCCEEeecceeCCccc-ccCCCccEECCCe---EECCeeEECCCCEECCCCEECC
Confidence 34555544431 1478888888888888888877775210 0111334444444 45555544 2455555555555
Q ss_pred CcEEe
Q 009971 481 NVKIV 485 (521)
Q Consensus 481 ~~~i~ 485 (521)
++++.
T Consensus 242 gSVV~ 246 (294)
T PLN02694 242 GSVVL 246 (294)
T ss_pred CCEEC
Confidence 55544
No 180
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.73 E-value=5.8e-06 Score=87.46 Aligned_cols=209 Identities=14% Similarity=0.224 Sum_probs=128.0
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHh----CCCc-eEEEEecCCh-HHHHHHHHHhhhc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNIS-KIYVLTQFNS-ASLNRHLSRAYAS 160 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~----~gi~-~I~Iv~~~~~-~~i~~~l~~~~~~ 160 (521)
-.++.+|.||||.||||+ ...||.++|+....++++..++.+.. .|.. ..+|-++++. +...++|++ +++
T Consensus 77 L~k~avlkLnGGlGTrmG---~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k-~~~ 152 (469)
T PLN02474 77 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEK-YTN 152 (469)
T ss_pred HhcEEEEEecCCcccccC---CCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHH-cCC
Confidence 367999999999999999 57899999995445899988888754 4543 3466666554 678899987 322
Q ss_pred -cCC-CCcCCCcEEEee-cccCC-------CCCCC-CCChHHHHHHH-----HHHhhhcCcceEEEEeCCeecc-ccHHH
Q 009971 161 -NMG-GYKNEGFVEVLA-AQQSP-------ENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHLYR-MDYER 223 (521)
Q Consensus 161 -~~~-~~~~~~~v~vl~-~~q~~-------~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lvl~gD~l~~-~dl~~ 223 (521)
... ..|.+....-+. ....+ .+..| +.|.++-.... ++.+.....+++.+.+.|.+.. .|. .
T Consensus 153 ~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp-~ 231 (469)
T PLN02474 153 SNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDL-K 231 (469)
T ss_pred CccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCH-H
Confidence 110 011111111111 00000 11124 56776644432 2333344678999999999765 453 4
Q ss_pred HHHHHHhcCCcEEEEEEecCcccCcceeEEE-eCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEE
Q 009971 224 FIQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIY 302 (521)
Q Consensus 224 ll~~h~~~~aditi~~~~~~~~~~~~~g~v~-~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIy 302 (521)
++.++.++++++++=+.+....+. .-|.+. .|..-+++++.+-|+..... .+ ....-.+.++..+
T Consensus 232 ~lg~~~~~~~e~~~ev~~Kt~~d~-kgG~l~~~dgk~~lvEysqvp~e~~~~-f~------------~~~kf~~fNtnn~ 297 (469)
T PLN02474 232 ILNHLIQNKNEYCMEVTPKTLADV-KGGTLISYEGKVQLLEIAQVPDEHVNE-FK------------SIEKFKIFNTNNL 297 (469)
T ss_pred HHHHHHhcCCceEEEEeecCCCCC-CccEEEEECCEEEEEEEecCCHHHHHh-hc------------ccccceeeeeeeE
Confidence 778888889888776665332222 235444 33334688998877654321 00 0112358999999
Q ss_pred EEeHHHHHHHHh
Q 009971 303 VISKDVMLNLLR 314 (521)
Q Consensus 303 ifs~~vl~~ll~ 314 (521)
.|+-+.++++++
T Consensus 298 w~~L~~l~~~~~ 309 (469)
T PLN02474 298 WVNLKAIKRLVE 309 (469)
T ss_pred EEEHHHHHHHhh
Confidence 999999988765
No 181
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.72 E-value=5.4e-08 Score=84.44 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=17.4
Q ss_pred CCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 474 KNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 474 ~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
.++.||++++|.+...+.+...+++++.|+++
T Consensus 66 ~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~ 97 (119)
T cd03358 66 KGTTVKRGASIGANATILPGVTIGEYALVGAG 97 (119)
T ss_pred CCcEECCCcEECcCCEEeCCcEECCCCEEccC
Confidence 35566666666655555444445555555544
No 182
>PRK10502 putative acyl transferase; Provisional
Probab=98.68 E-value=8.4e-08 Score=90.05 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=21.4
Q ss_pred eEECCCcEEce-eEEe---eeEECCCCEECCCCEEcc
Q 009971 401 SVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIED 433 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~ 433 (521)
..||++|.|++ +.|. .+.||++|.|+++|.|..
T Consensus 72 ~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~ 108 (182)
T PRK10502 72 LTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCT 108 (182)
T ss_pred EEECCCeEECCCceecccCceEECCCcEECCCeEEEC
Confidence 45666666665 5554 467777777777777643
No 183
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.66 E-value=3.4e-07 Score=85.82 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=18.6
Q ss_pred eCCCCEEe-eeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 461 IGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 461 Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
|+.++.+. +++|+++|.||.++.+.....+++.+.++.+++|..+
T Consensus 141 i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v~~~ 186 (197)
T cd03360 141 IAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKD 186 (197)
T ss_pred ECCCCEEcCCcEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCC
Confidence 33333333 3344444444444444433344444444444444433
No 184
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.63 E-value=2e-07 Score=78.70 Aligned_cols=66 Identities=17% Similarity=0.306 Sum_probs=46.3
Q ss_pred ceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCE
Q 009971 400 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNAR 477 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~ 477 (521)
+++||++|.|++ |.|. +++||++|.||. .|.++++++. +.|+++++|.+++|+++++
T Consensus 29 ~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~-------------------~~i~~~~~lg~siIg~~v~ 87 (101)
T cd05635 29 PVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGY-------------------SNKQHDGFLGHSYLGSWCN 87 (101)
T ss_pred CCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCC-------------------CEecCcCEEeeeEECCCCE
Confidence 355677777765 5555 467777777754 4667777765 4678888888888888888
Q ss_pred ECCCcEEeC
Q 009971 478 IGDNVKIVN 486 (521)
Q Consensus 478 Ig~~~~i~~ 486 (521)
||+++.+.|
T Consensus 88 ig~~~~~~~ 96 (101)
T cd05635 88 LGAGTNNSD 96 (101)
T ss_pred ECCCceecc
Confidence 888877755
No 185
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.62 E-value=1.9e-07 Score=92.33 Aligned_cols=8 Identities=0% Similarity=-0.068 Sum_probs=3.3
Q ss_pred hHHHHHHH
Q 009971 189 TADAVRQY 196 (521)
Q Consensus 189 t~~al~~~ 196 (521)
..+.+..+
T Consensus 29 ~~~~~~~~ 36 (341)
T TIGR03536 29 PSAELVAA 36 (341)
T ss_pred hhHHHHHH
Confidence 33444443
No 186
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.60 E-value=3.5e-07 Score=84.14 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=9.8
Q ss_pred eeEECCCCEECCCCEEcc
Q 009971 416 HSVVGLRSCISEGAIIED 433 (521)
Q Consensus 416 ~s~ig~~~~Ig~~~~I~~ 433 (521)
+..||+++.|+++|.|..
T Consensus 21 ~I~ig~~~~I~~~~~I~g 38 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRG 38 (161)
T ss_pred CEEECCceEEcCCCEEeC
Confidence 345555555555555543
No 187
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.58 E-value=1.3e-07 Score=99.07 Aligned_cols=90 Identities=21% Similarity=0.280 Sum_probs=75.9
Q ss_pred cccCCCcccCCCCcCCCceeecccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccc
Q 009971 374 FYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLA 452 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~ 452 (521)
++++.+.+ ..+.+.+++.+.+ .+.+|+||++|.|++ |.|.+|+|+++|.|+++|+|.++++..+
T Consensus 284 ~i~~~~~i-~~~~Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~------------- 348 (380)
T PRK05293 284 YIAENAKV-KNSLVVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN------------- 348 (380)
T ss_pred EECCCCEE-ecCEECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC-------------
Confidence 67777777 4566788887753 467899999999998 9999999999999999999999998876
Q ss_pred cCCCcceeeCCCCEEee-----eEECCCCEECCCcEE
Q 009971 453 AKGSVPIGIGKNSHIKR-----AIIDKNARIGDNVKI 484 (521)
Q Consensus 453 ~~~~~~~~Ig~~~~i~~-----~ii~~~~~Ig~~~~i 484 (521)
+.|++++++.+ .+||++++|+++++|
T Consensus 349 ------~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 349 ------AVIGDGVIIGGGKEVITVIGENEVIGVGTVI 379 (380)
T ss_pred ------CEECCCCEEcCCCceeEEEeCCCCCCCCcEe
Confidence 58999999976 788888888888766
No 188
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.58 E-value=5.7e-07 Score=75.97 Aligned_cols=67 Identities=22% Similarity=0.260 Sum_probs=38.2
Q ss_pred cceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCC
Q 009971 399 TDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNA 476 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~ 476 (521)
.+++|++++.|+. +.+. .++||+++.|++++.|++.+.++. + +.||. .|.+|+|..++
T Consensus 10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~---------------~---~~Ig~--~i~~svi~~~~ 69 (101)
T cd05635 10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGP---------------T---CKIGG--EVEDSIIEGYS 69 (101)
T ss_pred CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECC---------------C---CEECC--EECccEEcCCC
Confidence 3566777777775 5554 467777777777766654333332 1 24442 34556666666
Q ss_pred EECCCcEEe
Q 009971 477 RIGDNVKIV 485 (521)
Q Consensus 477 ~Ig~~~~i~ 485 (521)
.|+.++.|.
T Consensus 70 ~i~~~~~lg 78 (101)
T cd05635 70 NKQHDGFLG 78 (101)
T ss_pred EecCcCEEe
Confidence 655555554
No 189
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.54 E-value=2.7e-07 Score=91.18 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=22.3
Q ss_pred eEECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECC
Q 009971 401 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGA 439 (521)
Q Consensus 401 ~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~ 439 (521)
+.||+|++|++. .+.+||.+|.||++|.|...+.+++
T Consensus 148 a~IG~g~~I~h~--~givIG~~a~IGdnv~I~~~VtiGg 184 (273)
T PRK11132 148 AKIGRGIMLDHA--TGIVIGETAVIENDVSILQSVTLGG 184 (273)
T ss_pred ceECCCeEEcCC--CCeEECCCCEECCCCEEcCCcEEec
Confidence 445666666540 1357777777777777766555553
No 190
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.53 E-value=4.6e-07 Score=86.20 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=35.1
Q ss_pred ccCCCCcCCCceeecccccceEECCCcEEce-eEEe---eeEECCCCEECCCCEEcc
Q 009971 381 IYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIED 433 (521)
Q Consensus 381 i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~ 433 (521)
+...+.+.||..+.. -.++.||++++|+. |.|. +..||++|.|+++|.|..
T Consensus 58 ig~~~~I~~~~~~~~--g~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~ 112 (203)
T PRK09527 58 VGENAWVEPPVYFSY--GSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSV 112 (203)
T ss_pred cCCCcEEcCCEEEee--CCCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEe
Confidence 345566777766531 13567888888876 6664 378888888888888864
No 191
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.52 E-value=6.2e-07 Score=84.93 Aligned_cols=33 Identities=12% Similarity=0.037 Sum_probs=19.5
Q ss_pred ceEECCCcEEceeEEeeeEECCCCEECCCCEEc
Q 009971 400 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIE 432 (521)
Q Consensus 400 ~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~ 432 (521)
++.++.+|.+..-......||+++.|++++.|.
T Consensus 49 ~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~ 81 (192)
T PRK09677 49 GFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIA 81 (192)
T ss_pred ceEECCCeEEEecCCCeEEECCCCEECCCcEEc
Confidence 344555555532001246888888888888776
No 192
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.50 E-value=4.1e-07 Score=87.80 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=15.3
Q ss_pred CcceeeCCCCEEe-eeEECCCCEECCCcEEeC
Q 009971 456 SVPIGIGKNSHIK-RAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 456 ~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~ 486 (521)
+.|+.||+||.|. |+.+..++.+|++|+|..
T Consensus 180 a~Pv~IgdncliGAns~~veGV~vGdg~VV~a 211 (271)
T COG2171 180 ANPVIIGDNCLIGANSEVVEGVIVGDGCVVAA 211 (271)
T ss_pred CCCeEECCccEeccccceEeeeEeCCCcEEec
Confidence 3345555555554 444444444444444444
No 193
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.48 E-value=6.1e-07 Score=88.39 Aligned_cols=14 Identities=14% Similarity=0.446 Sum_probs=7.5
Q ss_pred EEECCCCEECCCcc
Q 009971 507 VTIIKDALIPSGTI 520 (521)
Q Consensus 507 v~I~~~~~i~~gsv 520 (521)
+.||++|+|++|++
T Consensus 242 I~IGd~~VVGAGaV 255 (319)
T TIGR03535 242 ISLGDDCVVEAGLY 255 (319)
T ss_pred eEECCCCEECCCCE
Confidence 44555555555554
No 194
>PLN02357 serine acetyltransferase
Probab=98.47 E-value=5.1e-07 Score=91.81 Aligned_cols=79 Identities=22% Similarity=0.363 Sum_probs=45.0
Q ss_pred EECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-eeEECCCCEECC
Q 009971 402 VIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGD 480 (521)
Q Consensus 402 ~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~ 480 (521)
.||.|+.|... .+++||+++.||++|.|..++.+++...+.+ .+.+.||+++ .||.++.|. ++.||+++.||+
T Consensus 234 ~IG~Gv~Idh~--~giVIGe~avIGdnV~I~~gVtIGg~g~~~g-~~~piIGd~V---~IGagA~IlggV~IGdga~IGA 307 (360)
T PLN02357 234 KIGQGILLDHA--TGVVIGETAVVGNNVSILHNVTLGGTGKQSG-DRHPKIGDGV---LIGAGTCILGNITIGEGAKIGA 307 (360)
T ss_pred EECCCeEECCC--CceEECCCCEECCCCEEeCCceecCccccCC-ccCceeCCCe---EECCceEEECCeEECCCCEECC
Confidence 34555555530 1356777777777777766666554221111 2345566665 666666663 666777777777
Q ss_pred CcEEeC
Q 009971 481 NVKIVN 486 (521)
Q Consensus 481 ~~~i~~ 486 (521)
++++..
T Consensus 308 gSVV~~ 313 (360)
T PLN02357 308 GSVVLK 313 (360)
T ss_pred CCEECc
Confidence 766653
No 195
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.47 E-value=7e-07 Score=76.03 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=24.3
Q ss_pred EECCCcEEce-eEEe---eeEECCCCEECCCCEEcce
Q 009971 402 VIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDT 434 (521)
Q Consensus 402 ~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~s 434 (521)
.||++|+|++ +.|. ++.||++|.|+++|+|.++
T Consensus 3 ~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~ 39 (109)
T cd04647 3 SIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH 39 (109)
T ss_pred EECCCcEECCCCEEecCCceEECCCCEECCCCEEECC
Confidence 4666666665 5554 4889999999999988876
No 196
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.47 E-value=6.4e-07 Score=93.57 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=15.3
Q ss_pred eeeCCCCEEeeeEECCCCEECCCcEEe
Q 009971 459 IGIGKNSHIKRAIIDKNARIGDNVKIV 485 (521)
Q Consensus 459 ~~Ig~~~~i~~~ii~~~~~Ig~~~~i~ 485 (521)
+.|+++|+|.+|+|++++.|++++.+.
T Consensus 311 ~~I~~~~~i~~sii~~~~~I~~~~~i~ 337 (369)
T TIGR02092 311 VHVGKDALIKNCIIMQRTVIGEGAHLE 337 (369)
T ss_pred CEECCCCEEEeeEEeCCCEECCCCEEE
Confidence 355555555555555555555555554
No 197
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.46 E-value=6.3e-07 Score=93.02 Aligned_cols=100 Identities=21% Similarity=0.210 Sum_probs=48.7
Q ss_pred eEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEEC
Q 009971 401 SVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIG 479 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig 479 (521)
+.+...+.|++ |.|.+++|+..|.||++|+|++++++++ +.|++|+ .|+ +|.|.+|+|+++++|+
T Consensus 249 ~~i~~~~~i~~~~~i~~~~i~~~~~Ig~~~~I~~~~i~~~----------~~Ig~~~---~i~-~~~i~~s~i~~~~~i~ 314 (353)
T TIGR01208 249 SKIRGRVVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPY----------TSIGEGV---VIR-DAEVEHSIVLDESVIE 314 (353)
T ss_pred CEEcCCEEECCCCEEeCCEEECCcEECCCCEEcCcEECCC----------CEECCCC---EEe-eeEEEeeEEcCCCEEc
Confidence 33444444544 4445666766777777777777777654 2233333 233 3344455555555555
Q ss_pred CCc-EEeCCCccCCceeecCCeEEcCC-eEEECCCCEE
Q 009971 480 DNV-KIVNSDSVQEAARETDGYFIKSG-IVTIIKDALI 515 (521)
Q Consensus 480 ~~~-~i~~~~~~~~~~~~~~~~~I~~g-~v~I~~~~~i 515 (521)
.+. .+. ..-+++.++++.++.|... ..++|+++.|
T Consensus 315 ~~~~~~~-~~ii~~~~~i~~~~~~~~~~~~~~g~~~~~ 351 (353)
T TIGR01208 315 GVQARIV-DSVIGKKVRIKGNRRRPGDLRLTIGDYSQV 351 (353)
T ss_pred CCcceee-cCEEcCCCEECCCcccccccceEEcCCcee
Confidence 442 332 2233333444444444321 1345555544
No 198
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.45 E-value=6.2e-07 Score=93.34 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=36.7
Q ss_pred CCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCc
Q 009971 404 GEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNV 482 (521)
Q Consensus 404 g~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~ 482 (521)
.+.++|+. +.|.+|+||++|.|+++ .|.+++++.+ +.|+++|+|.+|+|++++.||.++
T Consensus 281 ~~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~-------------------~~I~~~~~i~~sii~~~~~v~~~~ 340 (361)
T TIGR02091 281 PPAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIR-------------------VRIGSGSTVEDSVIMGDVGIGRGA 340 (361)
T ss_pred CCceEecCCCEEECCEECCCCEECCC-EEEccEECCC-------------------CEECCCCEEeeeEEeCCCEECCCC
Confidence 34444444 44455666666666654 5555555544 466666666666666666666666
Q ss_pred EEe
Q 009971 483 KIV 485 (521)
Q Consensus 483 ~i~ 485 (521)
.+.
T Consensus 341 ~l~ 343 (361)
T TIGR02091 341 VIR 343 (361)
T ss_pred EEe
Confidence 664
No 199
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.44 E-value=6.5e-07 Score=71.02 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=17.0
Q ss_pred eeecCCeEEcCCeEEECCCCEECCCccC
Q 009971 494 ARETDGYFIKSGIVTIIKDALIPSGTII 521 (521)
Q Consensus 494 ~~~~~~~~I~~g~v~I~~~~~i~~gsvi 521 (521)
++++.++.|..+ ++|++++.|+++++|
T Consensus 51 ~~v~~~~~i~~~-~~ig~~~~i~~~s~v 77 (78)
T cd00208 51 VEIGANAVIHGG-VKIGDNAVIGAGAVV 77 (78)
T ss_pred cEECCCCEEeCC-CEECCCCEECcCcEe
Confidence 333345556556 677777777777764
No 200
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.44 E-value=1.3e-06 Score=80.44 Aligned_cols=36 Identities=25% Similarity=0.423 Sum_probs=19.1
Q ss_pred EECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECC
Q 009971 402 VIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGA 439 (521)
Q Consensus 402 ~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~ 439 (521)
.||++++|++. .+++|++++.||++|.|...+.++.
T Consensus 69 ~Ig~~~~i~~~--~g~~Ig~~~~IG~~~~I~~~v~ig~ 104 (162)
T TIGR01172 69 RIGRGVFIDHG--TGVVIGETAVIGDDVTIYHGVTLGG 104 (162)
T ss_pred EECCCeEECCC--CeEEECCCCEECCCCEEcCCCEECC
Confidence 34555555420 1356666666666666665555543
No 201
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.43 E-value=3e-05 Score=78.00 Aligned_cols=209 Identities=14% Similarity=0.210 Sum_probs=126.9
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHh----CCCc-eEEEEecCC-hHHHHHHHHHhhhcc
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNIS-KIYVLTQFN-SASLNRHLSRAYASN 161 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~----~gi~-~I~Iv~~~~-~~~i~~~l~~~~~~~ 161 (521)
.++.+|+||||.||||+ ...||.|+||..++++++..++.+.. .|.. ..+|-+++. .+...+||++ +.+.
T Consensus 2 ~kvavl~LaGG~GTRLG---~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~-~~~~ 77 (300)
T cd00897 2 NKLVVLKLNGGLGTSMG---CTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKK-YAGV 77 (300)
T ss_pred CcEEEEEecCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHH-cCCC
Confidence 36789999999999997 57899999997667999999999854 3432 456666655 4778999987 3211
Q ss_pred -CC-CCcCCCcEEEeec------c--cCCCCCCC-CCChHHHHHHHH-----HHhhhcCcceEEEEeCCeecc-ccHHHH
Q 009971 162 -MG-GYKNEGFVEVLAA------Q--QSPENPNW-FQGTADAVRQYL-----WLFEEHNVLEFLVLAGDHLYR-MDYERF 224 (521)
Q Consensus 162 -~~-~~~~~~~v~vl~~------~--q~~~~~~~-~~Gt~~al~~~~-----~~l~~~~~~~~Lvl~gD~l~~-~dl~~l 224 (521)
.. ..|.++.+.-+.. . ..+....| +.|.++-..... +.+.....+++.+.+.|.+.. .|. .+
T Consensus 78 ~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp-~~ 156 (300)
T cd00897 78 NVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDL-RI 156 (300)
T ss_pred ccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCH-HH
Confidence 00 0111111110000 0 00111122 457766443322 233334678999999999765 453 47
Q ss_pred HHHHHhcCCcEEEEEEecCcccCcceeEEE-eCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEEE
Q 009971 225 IQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYV 303 (521)
Q Consensus 225 l~~h~~~~aditi~~~~~~~~~~~~~g~v~-~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyi 303 (521)
+-+|..+++++++=+.+....+ ..-|.+. .|..-+|+++.|-|...... .. + .....+.+++.+.
T Consensus 157 lg~~~~~~~~~~~evv~Kt~~d-ek~G~l~~~~g~~~vvEyse~p~e~~~~-~~-~-----------~~~~~~~nt~n~~ 222 (300)
T cd00897 157 LNHMVDNKAEYIMEVTDKTRAD-VKGGTLIQYEGKLRLLEIAQVPKEHVDE-FK-S-----------IKKFKIFNTNNLW 222 (300)
T ss_pred HHHHHhcCCceEEEEeecCCCC-CcccEEEEECCEEEEEEeccCCHHHHHh-hc-C-----------cccceEEEEeEEE
Confidence 8888889999877555433222 2344444 34334688888887754321 00 0 0113478999999
Q ss_pred EeHHHHHHHHhh
Q 009971 304 ISKDVMLNLLRD 315 (521)
Q Consensus 304 fs~~vl~~ll~~ 315 (521)
|+-+.++++++.
T Consensus 223 ~~l~~L~~~~~~ 234 (300)
T cd00897 223 VNLKAVKRVVEE 234 (300)
T ss_pred EEHHHHHHHHHh
Confidence 999988877653
No 202
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.40 E-value=1.4e-06 Score=80.86 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=24.8
Q ss_pred ceEECCCcEEce-eEEe---eeEECCCCEECCCCEEcce
Q 009971 400 DSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDT 434 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~s 434 (521)
+..||++|+|+. +.|. +.+||+++.|+++|.|..+
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~ 100 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTA 100 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeC
Confidence 455777777776 5554 4688888888888887643
No 203
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.40 E-value=1.1e-06 Score=84.83 Aligned_cols=109 Identities=21% Similarity=0.292 Sum_probs=56.7
Q ss_pred CCcCCCceeecccccceEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeC
Q 009971 385 PRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIG 462 (521)
Q Consensus 385 ~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig 462 (521)
.|+.|++.++ ..+.|++|++|.. +.|. ++.++..+.|.-++.++.|...| ++++||.|+...++=
T Consensus 109 ~RI~p~a~VR----~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VG---------kn~higgGa~I~GVL 175 (271)
T COG2171 109 VRIVPGAIVR----LGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVG---------KNSHIGGGASIGGVL 175 (271)
T ss_pred eeecCccEEe----eccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEEC---------CCcccCCcceEeEEe
Confidence 5666666553 2355666666665 5555 66666666666666666666555 244444444111111
Q ss_pred CCCEEeeeEECCCCEECCCcEEeCCCccCCceeecCCeEEcCCeEEECCCC
Q 009971 463 KNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDA 513 (521)
Q Consensus 463 ~~~~i~~~ii~~~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~ 513 (521)
+.-.-.-++|++||.||+|+.+.. +..+|+||+|..| +.|++++
T Consensus 176 ep~~a~Pv~IgdncliGAns~~ve------GV~vGdg~VV~aG-v~I~~~t 219 (271)
T COG2171 176 EPLQANPVIIGDNCLIGANSEVVE------GVIVGDGCVVAAG-VFITQDT 219 (271)
T ss_pred cCCCCCCeEECCccEeccccceEe------eeEeCCCcEEecc-eEEeCCc
Confidence 111112367777777777765543 2344444444444 4444333
No 204
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.39 E-value=2e-06 Score=76.55 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=6.9
Q ss_pred eEECCCCEECCCCEEc
Q 009971 417 SVVGLRSCISEGAIIE 432 (521)
Q Consensus 417 s~ig~~~~Ig~~~~I~ 432 (521)
++|..++.||++|.|.
T Consensus 26 avV~~~a~IG~~~iIn 41 (147)
T cd04649 26 GFVNFNAGTLGNCMVE 41 (147)
T ss_pred CEEccCCEECCCeEEC
Confidence 3444444444444443
No 205
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.38 E-value=2.3e-06 Score=81.37 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=16.5
Q ss_pred ECCCcEEce-eEE---eeeEECCCCEECCCCEEc
Q 009971 403 IGEGCVIKN-CKI---HHSVVGLRSCISEGAIIE 432 (521)
Q Consensus 403 Ig~~~~I~~-~~I---~~s~ig~~~~Ig~~~~I~ 432 (521)
+|+++.|.. +.+ .+..||+++.|+.+|.|.
T Consensus 58 ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~ 91 (203)
T PRK09527 58 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIV 91 (203)
T ss_pred cCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEe
Confidence 556666654 332 145666666666666553
No 206
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.38 E-value=2.2e-06 Score=85.00 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=8.2
Q ss_pred eeEECCCCEECCCCEE
Q 009971 416 HSVVGLRSCISEGAII 431 (521)
Q Consensus 416 ~s~ig~~~~Ig~~~~I 431 (521)
+++||.+|.||.+|.|
T Consensus 224 GavIGhds~IG~gasI 239 (341)
T TIGR03536 224 GVMVGKGSDLGGGCST 239 (341)
T ss_pred CCEECCCCEECCCCEE
Confidence 3455555555555555
No 207
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.38 E-value=1.1e-06 Score=93.49 Aligned_cols=54 Identities=15% Similarity=0.344 Sum_probs=48.7
Q ss_pred EEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeC
Q 009971 413 KIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 413 ~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 486 (521)
.+.+|+||++|.| ++|.|++|+++.+ +.||++|.|.+|+|+++|.||+++.|.+
T Consensus 324 ~~~~s~i~~~~~i-~~~~i~~svi~~~-------------------~~I~~~~~i~~svi~~~~~I~~~~~i~~ 377 (425)
T PRK00725 324 MAINSLVSGGCII-SGAVVRRSVLFSR-------------------VRVNSFSNVEDSVLLPDVNVGRSCRLRR 377 (425)
T ss_pred eEEeCEEcCCcEE-cCccccCCEECCC-------------------CEECCCCEEeeeEEcCCCEECCCCEEee
Confidence 4568999999999 7999999998886 6899999999999999999999999964
No 208
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.37 E-value=2e-06 Score=68.18 Aligned_cols=68 Identities=35% Similarity=0.446 Sum_probs=41.2
Q ss_pred EECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-eeEECCCCEE
Q 009971 402 VIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARI 478 (521)
Q Consensus 402 ~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~I 478 (521)
.||++|.|+. +.|. +++||+++.|+++|.|.++...+. ..++.||+++.+. +++|..+++|
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~----------------~~~~~ig~~~~v~~~~~i~~~~~i 65 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNE----------------KNPTIIGDNVEIGANAVIHGGVKI 65 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCc----------------cCCcEECCCcEECCCCEEeCCCEE
Confidence 5677777776 6666 488888899888888887643210 0123555555554 3555555555
Q ss_pred CCCcEEe
Q 009971 479 GDNVKIV 485 (521)
Q Consensus 479 g~~~~i~ 485 (521)
|+++.|.
T Consensus 66 g~~~~i~ 72 (78)
T cd00208 66 GDNAVIG 72 (78)
T ss_pred CCCCEEC
Confidence 5555544
No 209
>PRK10502 putative acyl transferase; Provisional
Probab=98.37 E-value=1.5e-06 Score=81.49 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=24.2
Q ss_pred eEECCCcEEce-eEEe---eeEECCCCEECCCCEEcc
Q 009971 401 SVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIED 433 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~ 433 (521)
+.||+++.|.. +.|. +..||+++.|+++|.|.+
T Consensus 52 a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~ 88 (182)
T PRK10502 52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYN 88 (182)
T ss_pred cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecc
Confidence 45667777765 5554 578899999999988874
No 210
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.37 E-value=1.4e-06 Score=92.85 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=40.1
Q ss_pred cEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECC------------
Q 009971 407 CVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDK------------ 474 (521)
Q Consensus 407 ~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~------------ 474 (521)
+.+..+.|.++.||++|.| ++|.|++|+++++ +.||+++.|.+|+|..
T Consensus 299 a~~~~~~~~~~~ig~~~~i-~~~~i~~svi~~~-------------------~~Ig~~~~i~~svi~~~~~~p~~~~~~~ 358 (429)
T PRK02862 299 SKLLDATITESIIAEGCII-KNCSIHHSVLGIR-------------------SRIESGCTIEDTLVMGADFYESSEEREE 358 (429)
T ss_pred ccccccEEEeCEECCCCEE-CCcEEEEEEEeCC-------------------cEECCCCEEEeeEEecCccccccccccc
Confidence 3333344455666666666 5566666555554 4566666666665543
Q ss_pred -------CCEECCCcEEeCCCccCCceeecCCeEE
Q 009971 475 -------NARIGDNVKIVNSDSVQEAARETDGYFI 502 (521)
Q Consensus 475 -------~~~Ig~~~~i~~~~~~~~~~~~~~~~~I 502 (521)
++.||++|.|.+ .-+++.+++|+++.+
T Consensus 359 ~~~~~~~~~~Ig~~~~i~~-~ii~~~~~i~~~~~~ 392 (429)
T PRK02862 359 LRKEGKPPLGIGEGTTIKR-AIIDKNARIGNNVRI 392 (429)
T ss_pred ccccCCcccEECCCCEEEE-EEECCCcEECCCcEE
Confidence 466666666643 334444444444444
No 211
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.36 E-value=1.7e-06 Score=81.16 Aligned_cols=47 Identities=13% Similarity=0.125 Sum_probs=28.6
Q ss_pred CCcCCCceeecccccceEECCCcEEce-eEEee---eEECCCCEECCCCEEcc
Q 009971 385 PRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHH---SVVGLRSCISEGAIIED 433 (521)
Q Consensus 385 ~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~---s~ig~~~~Ig~~~~I~~ 433 (521)
+.+.||..... -.+..||++++|+. |+|.+ ..||++|.|+++|.|..
T Consensus 60 ~~i~~~~~~~~--g~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t 110 (183)
T PRK10092 60 AYIEPTFRCDY--GYNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYT 110 (183)
T ss_pred EEEeCCEEEee--cCCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEc
Confidence 44555553310 13566777777775 55553 37888888888877763
No 212
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.34 E-value=1.4e-06 Score=80.53 Aligned_cols=79 Identities=25% Similarity=0.358 Sum_probs=53.2
Q ss_pred EECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-eeEECCCCEECC
Q 009971 402 VIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGD 480 (521)
Q Consensus 402 ~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~ 480 (521)
.||.|.+|.+. ...+||+-+.||++|.|..++.+|..--|.. .++..||++. .||.++.|- +-.||+|+.||+
T Consensus 75 ~IG~g~fIdHg--~GvVIgeta~IGddv~I~~gVTLGgtg~~~g-~RhPtIg~~V---~IGagAkILG~I~IGd~akIGA 148 (194)
T COG1045 75 KIGRGLFIDHG--TGVVIGETAVIGDDVTIYHGVTLGGTGKESG-KRHPTIGNGV---YIGAGAKILGNIEIGDNAKIGA 148 (194)
T ss_pred eECCceEEcCC--ceEEEcceeEECCCeEEEcceEecCCCCcCC-CCCCccCCCe---EECCCCEEEcceEECCCCEECC
Confidence 36777777751 1467777777777777777776665433322 3566777776 778777764 777888888888
Q ss_pred CcEEeC
Q 009971 481 NVKIVN 486 (521)
Q Consensus 481 ~~~i~~ 486 (521)
|+++..
T Consensus 149 ~sVVlk 154 (194)
T COG1045 149 GSVVLK 154 (194)
T ss_pred CceEcc
Confidence 877764
No 213
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.33 E-value=1.6e-06 Score=92.70 Aligned_cols=83 Identities=19% Similarity=0.189 Sum_probs=62.9
Q ss_pred CCcCCCceeecccccceEECCCcEEce-eEEeeeEECC----------------C---CEECCCCEEcceEEECCccccc
Q 009971 385 PRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGL----------------R---SCISEGAIIEDTLLMGADYYET 444 (521)
Q Consensus 385 ~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~s~ig~----------------~---~~Ig~~~~I~~s~i~~~~~~e~ 444 (521)
+.+.+++.+.++.|.+|+|+++|.|++ |.|.+++|.. + ++||++|+|+++++..+
T Consensus 316 s~I~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~----- 390 (436)
T PLN02241 316 SIISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKN----- 390 (436)
T ss_pred eEEcCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCC-----
Confidence 667888887777788999999999998 9999877744 2 38999999998887665
Q ss_pred cccccccccCCCcceeeCCCCEEe-eeEECCCCEECCCcEEeC
Q 009971 445 DADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 445 ~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~ 486 (521)
+.||+++.|. ..-+.+..++|+++.+.+
T Consensus 391 --------------v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~ 419 (436)
T PLN02241 391 --------------ARIGKNVVIINKDGVQEADREEEGYYIRS 419 (436)
T ss_pred --------------CEECCCcEEecccccCCccccccccEEeC
Confidence 5788888776 335555666666666654
No 214
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.33 E-value=2.2e-06 Score=84.85 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=9.2
Q ss_pred eeEECCCCEECCCCEEcc
Q 009971 416 HSVVGLRSCISEGAIIED 433 (521)
Q Consensus 416 ~s~ig~~~~Ig~~~~I~~ 433 (521)
++.||++|.|..+++|++
T Consensus 167 ~a~IGdnv~I~~~VtiGg 184 (273)
T PRK11132 167 TAVIENDVSILQSVTLGG 184 (273)
T ss_pred CCEECCCCEEcCCcEEec
Confidence 345555555555555543
No 215
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=2e-06 Score=87.85 Aligned_cols=57 Identities=21% Similarity=0.219 Sum_probs=48.0
Q ss_pred cCCCCcCCCceeecccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECC
Q 009971 382 YTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGA 439 (521)
Q Consensus 382 ~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~ 439 (521)
..++-+..+|.+.+ .|.+|+|+.++.|+. |.|.+|+|.++|.||+||+|+.++|-.+
T Consensus 294 v~nSLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~ 351 (393)
T COG0448 294 VSNSLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKN 351 (393)
T ss_pred EeeeeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCC
Confidence 35667788888877 788999999999998 9999999999999999999998887554
No 216
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.30 E-value=6.4e-06 Score=76.36 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=6.5
Q ss_pred ceeecCCeEEcCC
Q 009971 493 AARETDGYFIKSG 505 (521)
Q Consensus 493 ~~~~~~~~~I~~g 505 (521)
++++|++++|+.|
T Consensus 136 gv~Ig~~~~Vgag 148 (169)
T cd03357 136 GVTIGDNSVIGAG 148 (169)
T ss_pred CCEECCCCEECCC
Confidence 3444555555555
No 217
>PLN02739 serine acetyltransferase
Probab=98.29 E-value=2.3e-06 Score=86.40 Aligned_cols=78 Identities=22% Similarity=0.288 Sum_probs=38.6
Q ss_pred EECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-eeEECCCCEECC
Q 009971 402 VIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGD 480 (521)
Q Consensus 402 ~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~ 480 (521)
.||+|+.|.+. .+++||.+|.||++|.|...+.++....+.. .+...||+++ .||.+++|- ++.||+++.||+
T Consensus 213 ~IG~Gv~IdHg--~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g-~r~p~IGd~V---~IGagA~IlG~V~IGd~aiIGA 286 (355)
T PLN02739 213 RIGKGILLDHG--TGVVIGETAVIGDRVSILHGVTLGGTGKETG-DRHPKIGDGA---LLGACVTILGNISIGAGAMVAA 286 (355)
T ss_pred cccCceEEecC--CceEECCCCEECCCCEEcCCceeCCcCCcCC-CCCcEECCCC---EEcCCCEEeCCeEECCCCEECC
Confidence 35666666530 1345555555555555544444433211111 1344555555 566666654 566666666666
Q ss_pred CcEEe
Q 009971 481 NVKIV 485 (521)
Q Consensus 481 ~~~i~ 485 (521)
|+++.
T Consensus 287 GSVV~ 291 (355)
T PLN02739 287 GSLVL 291 (355)
T ss_pred CCEEC
Confidence 66664
No 218
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.27 E-value=3.5e-06 Score=71.00 Aligned_cols=74 Identities=23% Similarity=0.282 Sum_probs=47.0
Q ss_pred EECCCcEEce-eEEe---eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCE---EeeeEECC
Q 009971 402 VIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSH---IKRAIIDK 474 (521)
Q Consensus 402 ~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~---i~~~ii~~ 474 (521)
.|++++.|++ +.|. +++||+++.||++|.|...+ .|++++. +..++|++
T Consensus 4 ~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i~~~~------------------------~i~~~~~~~~~~~~~Ig~ 59 (101)
T cd03354 4 DIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGV------------------------TLGGKGKGGGKRHPTIGD 59 (101)
T ss_pred EeCCCCEECCCEEECCCCeEEECCCCEECCCCEEcCCC------------------------EECCCccCCcCCCCEECC
Confidence 4555555554 4443 56788888888888765433 4445553 56778888
Q ss_pred CCEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 475 NARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 475 ~~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
++.|+.++.+... .+++++++|+++
T Consensus 60 ~~~Ig~~~~i~~~------~~Ig~~~~i~~~ 84 (101)
T cd03354 60 NVVIGAGAKILGN------ITIGDNVKIGAN 84 (101)
T ss_pred CcEEcCCCEEECc------CEECCCCEECCC
Confidence 8888888877653 345555555555
No 219
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.27 E-value=4.1e-06 Score=71.51 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=22.6
Q ss_pred eEECCCcEEce-eEEe---eeEECCCCEECCCCEEcc
Q 009971 401 SVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIED 433 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~ 433 (521)
..||++|.|++ +.|. ...||++|.|++++.|.+
T Consensus 4 i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~ 40 (107)
T cd05825 4 LTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCT 40 (107)
T ss_pred EEECCCCEECCCCEEeeCCceEECCCCEECCCeEeec
Confidence 35666666665 5554 478888888888887753
No 220
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.26 E-value=2.6e-06 Score=90.22 Aligned_cols=54 Identities=20% Similarity=0.373 Sum_probs=48.9
Q ss_pred EEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECCCcEEeC
Q 009971 413 KIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 413 ~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 486 (521)
.+.+++||++|.|+ ++.|++|+|+.+ +.|+++++|.+|+|+++|.||+++.|.+
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~~svIg~~-------------------~~I~~~~~i~~sii~~~~~i~~~~~i~~ 365 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVRNSVLSPN-------------------VVVESGAEVEDSVLMDGVRIGRGAVVRR 365 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeEcCEECCC-------------------CEECCCCEEeeeEECCCCEECCCCEEEe
Confidence 45689999999998 999999888776 6899999999999999999999999975
No 221
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.26 E-value=4.8e-06 Score=78.86 Aligned_cols=54 Identities=11% Similarity=0.079 Sum_probs=35.5
Q ss_pred ccCCCCcCCCceeecccccceEECCCcEEce-eEEe---eeEECCCCEECCCCEEcce
Q 009971 381 IYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDT 434 (521)
Q Consensus 381 i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~s 434 (521)
+..++.+..++.+..-......||++|.|+. +.|. .+.||++|.|++++.|.+.
T Consensus 46 iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~ 103 (192)
T PRK09677 46 FGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDH 103 (192)
T ss_pred ECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECC
Confidence 4444555555554321223467888888876 6665 5789999999999888763
No 222
>PLN02694 serine O-acetyltransferase
Probab=98.25 E-value=3.4e-06 Score=83.56 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=50.4
Q ss_pred ceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeC---CCCEEeeeEECCC
Q 009971 400 DSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIG---KNSHIKRAIIDKN 475 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig---~~~~i~~~ii~~~ 475 (521)
.+.|++++.||. +.|.+ +.++.||++|+|++.+.+... +++| ..+..++++|+++
T Consensus 160 gvdI~p~A~IG~gv~Idh---~tGVVIGe~a~IGdnv~I~~~------------------VtLGg~g~~~~~r~piIGd~ 218 (294)
T PLN02694 160 AVDIHPAAKIGKGILFDH---ATGVVIGETAVIGNNVSILHH------------------VTLGGTGKACGDRHPKIGDG 218 (294)
T ss_pred eEEeCCcceecCCEEEeC---CCCeEECCCcEECCCCEEeec------------------ceeCCcccccCCCccEECCC
Confidence 567899999986 55444 247899999999876544431 2333 2334456777777
Q ss_pred CEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 476 ARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 476 ~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
|.||.+++|.+. .++|++++|++|
T Consensus 219 V~IGagA~Ilgg------i~IGd~a~IGAg 242 (294)
T PLN02694 219 VLIGAGATILGN------VKIGEGAKIGAG 242 (294)
T ss_pred eEECCeeEECCC------CEECCCCEECCC
Confidence 777777777653 445555555555
No 223
>PLN02739 serine acetyltransferase
Probab=98.25 E-value=2.7e-06 Score=85.97 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=43.9
Q ss_pred ceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCE---EeeeEECCC
Q 009971 400 DSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSH---IKRAIIDKN 475 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~---i~~~ii~~~ 475 (521)
.+-|++++.|+. +.|.| +.++.||++|+|++.+.+... ++||.... -++.+||++
T Consensus 205 GidI~p~A~IG~Gv~IdH---g~GVVIG~~avIGdnv~I~~g------------------VTIGg~g~~~g~r~p~IGd~ 263 (355)
T PLN02739 205 GIDIHPAARIGKGILLDH---GTGVVIGETAVIGDRVSILHG------------------VTLGGTGKETGDRHPKIGDG 263 (355)
T ss_pred CcccCCCccccCceEEec---CCceEECCCCEECCCCEEcCC------------------ceeCCcCCcCCCCCcEECCC
Confidence 456788888875 43333 357888888877765544321 23332111 023556666
Q ss_pred CEECCCcEEeCCCccCCceeecCCeEEcCC
Q 009971 476 ARIGDNVKIVNSDSVQEAARETDGYFIKSG 505 (521)
Q Consensus 476 ~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~g 505 (521)
|.||.|+.|.+ +.+||++++|++|
T Consensus 264 V~IGagA~IlG------~V~IGd~aiIGAG 287 (355)
T PLN02739 264 ALLGACVTILG------NISIGAGAMVAAG 287 (355)
T ss_pred CEEcCCCEEeC------CeEECCCCEECCC
Confidence 66666666654 3555556666666
No 224
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.25 E-value=9.6e-06 Score=68.33 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=16.6
Q ss_pred eeCCCCEEe-eeEECCCCEECCCcEEeC
Q 009971 460 GIGKNSHIK-RAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 460 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~ 486 (521)
.|+.++.+. .+.|++++.|++++.+.+
T Consensus 62 ~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~ 89 (101)
T cd03354 62 VIGAGAKILGNITIGDNVKIGANAVVTK 89 (101)
T ss_pred EEcCCCEEECcCEECCCCEECCCCEECc
Confidence 566666665 366666666666666654
No 225
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.24 E-value=5.1e-06 Score=76.48 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=12.3
Q ss_pred eeEECCCCEECCCCEEcce
Q 009971 416 HSVVGLRSCISEGAIIEDT 434 (521)
Q Consensus 416 ~s~ig~~~~Ig~~~~I~~s 434 (521)
+++||++|.|++++.|+.+
T Consensus 87 ~~~IG~~~~I~~~v~ig~~ 105 (162)
T TIGR01172 87 TAVIGDDVTIYHGVTLGGT 105 (162)
T ss_pred CCEECCCCEEcCCCEECCC
Confidence 5666666666666666654
No 226
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.22 E-value=1.9e-06 Score=75.46 Aligned_cols=50 Identities=26% Similarity=0.465 Sum_probs=37.9
Q ss_pred CCCcCCCceee-cccc-cceEECCCcEEce-eEE-e---eeEECCCCEECCCCEEcc
Q 009971 384 QPRYLPPSKML-DADV-TDSVIGEGCVIKN-CKI-H---HSVVGLRSCISEGAIIED 433 (521)
Q Consensus 384 ~~~~~~~~~i~-~~~i-~~~~Ig~~~~I~~-~~I-~---~s~ig~~~~Ig~~~~I~~ 433 (521)
++.+.|.+.+- .+.+ ++++|++||++.. +.+ . ..+||+++.|.+.+.|.+
T Consensus 8 svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n 64 (190)
T KOG4042|consen 8 SVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRN 64 (190)
T ss_pred eeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHh
Confidence 35677777664 5555 6799999999997 433 3 369999999999998854
No 227
>PRK10191 putative acyl transferase; Provisional
Probab=98.21 E-value=5.8e-06 Score=74.50 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=16.4
Q ss_pred eEECCCcEEce---eEEe-eeEECCCCEECCCCEEc
Q 009971 401 SVIGEGCVIKN---CKIH-HSVVGLRSCISEGAIIE 432 (521)
Q Consensus 401 ~~Ig~~~~I~~---~~I~-~s~ig~~~~Ig~~~~I~ 432 (521)
+.||+++.|++ +.|. ++.||++|.|+++|.|+
T Consensus 48 a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG 83 (146)
T PRK10191 48 ATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIG 83 (146)
T ss_pred CEECCCeEECCCCeEEECCCcEECCCCEECCCCEEC
Confidence 45677777764 2332 34444444444444444
No 228
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=4.6e-06 Score=86.65 Aligned_cols=63 Identities=33% Similarity=0.468 Sum_probs=52.7
Q ss_pred cceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCE
Q 009971 399 TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNAR 477 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~ 477 (521)
.+++||++|.|++ +.|.+|+|.++|.|++++.|.+|++..+ +.||++. . +++ +.
T Consensus 278 ~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~-------------------~~ig~~~-~----i~d-~~ 332 (358)
T COG1208 278 PYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGEN-------------------CKIGASL-I----IGD-VV 332 (358)
T ss_pred CCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCC-------------------cEECCce-e----ecc-eE
Confidence 3588999999998 9999999999999999999999999987 5788722 1 666 77
Q ss_pred ECCCcEEeC
Q 009971 478 IGDNVKIVN 486 (521)
Q Consensus 478 Ig~~~~i~~ 486 (521)
+|.++.+..
T Consensus 333 ~g~~~~i~~ 341 (358)
T COG1208 333 IGINSEILP 341 (358)
T ss_pred ecCceEEcC
Confidence 777777765
No 229
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.20 E-value=6.3e-06 Score=77.31 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=13.6
Q ss_pred EECCCcEEce-eEEe-eeEECCCC--EECCCCEEc
Q 009971 402 VIGEGCVIKN-CKIH-HSVVGLRS--CISEGAIIE 432 (521)
Q Consensus 402 ~Ig~~~~I~~-~~I~-~s~ig~~~--~Ig~~~~I~ 432 (521)
.+|.++.|++ +.|. +++|++.+ +||++|.|.
T Consensus 69 ~~g~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~ 103 (183)
T PRK10092 69 DYGYNIFLGNNFYANFDCVMLDVCPIRIGDNCMLA 103 (183)
T ss_pred eecCCcEEcCCcEECCceEEecCceEEECCCCEEC
Confidence 3455555554 4443 34444433 444444444
No 230
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=98.17 E-value=2.9e-05 Score=74.60 Aligned_cols=175 Identities=24% Similarity=0.320 Sum_probs=103.2
Q ss_pred EEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 91 ~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
-|||+|-|.++||.- |.|.+++|+ |||+|+++.+.+++ +++|+|.| .++.+.+.+.+ +. .
T Consensus 1 iaiIpAR~gS~rlp~------Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaT--d~~~i~~~~~~-~g---------~ 61 (217)
T PF02348_consen 1 IAIIPARGGSKRLPG------KNLKPLGGK-PLIEYVIERAKQSKLIDEIVVAT--DDEEIDDIAEE-YG---------A 61 (217)
T ss_dssp EEEEEE-SSSSSSTT------GGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEE--SSHHHHHHHHH-TT---------S
T ss_pred CEEEecCCCCCCCCc------chhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeC--CCHHHHHHHHH-cC---------C
Confidence 389999999999973 999999997 99999999999975 79998888 56667777665 21 1
Q ss_pred cEEEeecccCCCCCCCCCChHHHHHHHH-HHhhhcCcceEEEEeCCe-ecc-ccHHHHHHHHHhcCCc-EEEEEEecCc-
Q 009971 170 FVEVLAAQQSPENPNWFQGTADAVRQYL-WLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDAD-ITVAALPMDE- 244 (521)
Q Consensus 170 ~v~vl~~~q~~~~~~~~~Gt~~al~~~~-~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~ad-iti~~~~~~~- 244 (521)
.+...... . ..++ +....+. .+..+ ..+.++.+.||. |.. ..+..+++.+.+...+ +.-...+...
T Consensus 62 ~v~~~~~~----~---~~~~-~r~~~~~~~~~~~-~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 132 (217)
T PF02348_consen 62 KVIFRRGS----L---ADDT-DRFIEAIKHFLAD-DEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISNLVDPVGSS 132 (217)
T ss_dssp EEEE--TT----S---SSHH-HHHHHHHHHHTCS-TTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEEEEEEECSH
T ss_pred eeEEcChh----h---cCCc-ccHHHHHHHhhhh-HHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhccccccccch
Confidence 12221111 1 1333 3333333 33332 334788999999 665 4599999999988776 3222222211
Q ss_pred ---ccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccccccccCCchhhcc-CCceeeEEEEEEeHH
Q 009971 245 ---KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKE-MPYIASMGIYVISKD 307 (521)
Q Consensus 245 ---~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~GIyifs~~ 307 (521)
...... ....+.++....+.+.+.....+... .. ..++...++|.+.+.
T Consensus 133 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 185 (217)
T PF02348_consen 133 VEIFNFNPL-KVLFDDDGLELYFSEHVIPYIRRNPE-------------EFKYFYIRQVGIYAFRKE 185 (217)
T ss_dssp HHHTSTTST-EEEECTTSBEEEEESSESSECHHHHC-------------SSSSTEEEEEEEEEEEHH
T ss_pred hhcccccce-EEEeccccchhhcccCCCcccccccc-------------cccccccccccccccccc
Confidence 111111 22334455555555544332211100 00 135788999999997
No 231
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.17 E-value=1.9e-05 Score=78.04 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=3.9
Q ss_pred ecCCeEEcCC
Q 009971 496 ETDGYFIKSG 505 (521)
Q Consensus 496 ~~~~~~I~~g 505 (521)
+|++|+|++|
T Consensus 244 IGd~~VVGAG 253 (319)
T TIGR03535 244 LGDDCVVEAG 253 (319)
T ss_pred ECCCCEECCC
Confidence 3333333333
No 232
>PRK10191 putative acyl transferase; Provisional
Probab=98.14 E-value=1.7e-05 Score=71.47 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=13.8
Q ss_pred eeCCCCEEe-eeEECCCCEECCCcEEe
Q 009971 460 GIGKNSHIK-RAIIDKNARIGDNVKIV 485 (521)
Q Consensus 460 ~Ig~~~~i~-~~ii~~~~~Ig~~~~i~ 485 (521)
.||.++.+. ++.|++++.||+++++.
T Consensus 100 ~Ig~~~~I~~~v~IG~~~~Igags~V~ 126 (146)
T PRK10191 100 ELGANVIILGDITIGNNVTVGAGSVVL 126 (146)
T ss_pred EEcCCCEEeCCCEECCCCEECCCCEEC
Confidence 455555554 45555555555555554
No 233
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=98.11 E-value=4e-05 Score=87.46 Aligned_cols=217 Identities=18% Similarity=0.208 Sum_probs=138.6
Q ss_pred eEEEEeCCeecccc--HHHHHHHHHhcCCcEEEEEEecCcccCcceeEEEeCCC--CCeEEeeeCCChhhhhhccccccc
Q 009971 207 EFLVLAGDHLYRMD--YERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE--GRIIEFSEKPKGEQLKAMKVDTTI 282 (521)
Q Consensus 207 ~~Lvl~gD~l~~~d--l~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~~d~~--grV~~i~ekp~~~~~~~~~~~~~~ 282 (521)
.+||..||.+..++ +.. -.+++++......+.+-.+..|++..|++ +++..+.+||..+...++.
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~----- 222 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLS----- 222 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhh-----
Confidence 69999999866544 222 23467666666666556778999999887 6888888999987754332
Q ss_pred ccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCC------CCCChhhcchHhhhh---------CCceEEEEEec-ce
Q 009971 283 LGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP------GANDFGSEVIPGATS---------IGMRVQAYLYD-GY 346 (521)
Q Consensus 283 ~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~------~~~d~~~dil~~li~---------~~~~I~~~~~~-g~ 346 (521)
.....+.++|+|+|+.+.++.+++.... ...|+.+|++..|-. .+.++....+. +.
T Consensus 223 --------~~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~ 294 (974)
T PRK13412 223 --------KTHLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGE 294 (974)
T ss_pred --------cCCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCce
Confidence 2334689999999999888766654221 122334555544211 14566667665 57
Q ss_pred EEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCceeecccccceEECCCcEEce--eEEeeeEECCCCE
Q 009971 347 WEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN--CKIHHSVVGLRSC 424 (521)
Q Consensus 347 w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~--~~I~~s~ig~~~~ 424 (521)
|+-+||-..|+.....+.+.. .....+.....-..|+. .|.|++++.++.+++ +.|.+|.|+.+++
T Consensus 295 F~H~GTs~E~l~~~~~~q~~~--------~~~~~i~~~~~~~~~~~----~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ 362 (974)
T PRK13412 295 FYHYGTSRELISSTLAVQNLV--------TDQRRIMHRKVKPHPAM----FVQNAVLSGKLTAENATLWIENSHVGEGWK 362 (974)
T ss_pred eEEecCcHHHhcCchhHHHHh--------hhhhhhhccccCCCCce----EEEeeEecCCcccCCCeEEEEeeEecCCeE
Confidence 999999999886443332211 11111111111112221 256888999999997 5588999999999
Q ss_pred ECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEE
Q 009971 425 ISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAII 472 (521)
Q Consensus 425 Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii 472 (521)
||.+|+|.+.-..+-+ ..|-+++.|...=+
T Consensus 363 ig~~~Iisgv~~~~~~------------------~~vP~~~ci~~vpl 392 (974)
T PRK13412 363 LASRSIITGVPENSWN------------------LDLPEGVCIDVVPV 392 (974)
T ss_pred EcCCcEEecccccccc------------------eecCCCcEEEEEEc
Confidence 9999998776432211 36777777774444
No 234
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.07 E-value=1.9e-05 Score=71.19 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=22.5
Q ss_pred EECCCcEEce--eEEe--eeEECCCCEECCCCEEcce
Q 009971 402 VIGEGCVIKN--CKIH--HSVVGLRSCISEGAIIEDT 434 (521)
Q Consensus 402 ~Ig~~~~I~~--~~I~--~s~ig~~~~Ig~~~~I~~s 434 (521)
.||+++.|+. +.+. .+.||++|.|++++.|...
T Consensus 3 ~iG~~s~i~~~~~~~~~~~i~IG~~~~I~~~v~i~~~ 39 (145)
T cd03349 3 SVGDYSYGSGPDCDVGGDKLSIGKFCSIAPGVKIGLG 39 (145)
T ss_pred EEeCceeeCCCCceEeCCCeEECCCCEECCCCEECCC
Confidence 3555555554 3333 5788999999999888765
No 235
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=98.07 E-value=0.00019 Score=72.59 Aligned_cols=214 Identities=13% Similarity=0.119 Sum_probs=123.6
Q ss_pred EEEEEeCCCCCCCCccccCCCccceec---CCCcchhHHHHHHhHhC--------CC-ceEEEEecCC-hHHHHHHHHHh
Q 009971 91 LGIILGGGAGTRLYPLTKKRAKPAVPL---GANYRLIDIPVSNCLNS--------NI-SKIYVLTQFN-SASLNRHLSRA 157 (521)
Q Consensus 91 ~aVILAaG~GtRl~PlT~~~PK~LlpI---~G~~pLI~~~l~~l~~~--------gi-~~I~Iv~~~~-~~~i~~~l~~~ 157 (521)
.+|+||||.||||+ ..-||.++|| .|+ ++++..++++... +. -.++|.+.++ .+...++|++.
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 47999999999999 6899999999 354 9999999988542 21 2457777754 47899999874
Q ss_pred hhccCCC----CcCCCcEEEeeccc--C------CCCCCC-CCChHHHHHHHH-----HHhhhcCcceEEEEeCCe-ecc
Q 009971 158 YASNMGG----YKNEGFVEVLAAQQ--S------PENPNW-FQGTADAVRQYL-----WLFEEHNVLEFLVLAGDH-LYR 218 (521)
Q Consensus 158 ~~~~~~~----~~~~~~v~vl~~~q--~------~~~~~~-~~Gt~~al~~~~-----~~l~~~~~~~~Lvl~gD~-l~~ 218 (521)
..+++.. .|.++.+..+.... . +..-.| +.|.++-..... +.+.+...+++.+..-|. |..
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 3333211 12222233332110 0 011112 567766443322 233334567888888888 555
Q ss_pred ccHHHHHHHHHhcCCcEEEEEEecCcccCcceeEEEe--CCCC--Ce--EEeeeCCChhhhhhcccccccccCCchhhcc
Q 009971 219 MDYERFIQAHRETDADITVAALPMDEKRATAFGLMKI--DEEG--RI--IEFSEKPKGEQLKAMKVDTTILGLDDERAKE 292 (521)
Q Consensus 219 ~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~~--d~~g--rV--~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~ 292 (521)
.-...++-.+..++.++...+.+.. ....-|++.. ..+| .| ++|.|-+..-... ..+..- . ....-.
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~--~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~--~~~~g~--~-~~~~~~ 230 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRK--PKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRAS--GKDDGD--V-DDKTGF 230 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCC--CCCceeeEEEEecCCCceEEEEEEeecCCHHHHhc--CCCCCC--c-cccccc
Confidence 4455567777778888776655522 2345676653 2234 34 7887765432110 000000 0 000112
Q ss_pred CCceeeEEEEEEeHHHHHHHHhh
Q 009971 293 MPYIASMGIYVISKDVMLNLLRD 315 (521)
Q Consensus 293 ~~~l~~~GIyifs~~vl~~ll~~ 315 (521)
+.+-.++++++|+-+.+.+.++.
T Consensus 231 s~f~gNi~~~~f~l~~~~~~l~~ 253 (315)
T cd06424 231 SPFPGNINQLVFSLGPYMDELEK 253 (315)
T ss_pred ccCCCeeeeEEEeHHHHHHHHhh
Confidence 34578999999998887777663
No 236
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=98.05 E-value=6.9e-05 Score=79.24 Aligned_cols=95 Identities=25% Similarity=0.396 Sum_probs=65.2
Q ss_pred ceEEEEeCCeecc-ccHHHHHHHHHhcCCcEEEEEEecCcccCcceeEEEeCCCC---------CeEEeeeCCChhhhhh
Q 009971 206 LEFLVLAGDHLYR-MDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEG---------RIIEFSEKPKGEQLKA 275 (521)
Q Consensus 206 ~~~Lvl~gD~l~~-~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~~d~~g---------rV~~i~ekp~~~~~~~ 275 (521)
.-++|..+|+++. .+ ...+. + .+++++++..+.+.+-.+..|+.++|+++ .+.+|..||..+...+
T Consensus 54 pGv~V~s~D~vl~~~~-~~~~~-~--~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~~ 129 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPD-DPLID-W--DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMRA 129 (414)
T ss_pred cceEEEecccccccCc-cccCC-C--CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHHh
Confidence 3589999995433 33 11222 1 23678888888777667889999999988 8999999999876531
Q ss_pred cccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHh
Q 009971 276 MKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR 314 (521)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~ 314 (521)
- ...........++|++.|+.+..+.++.
T Consensus 130 ~----------~av~~~~~~~ldsG~~~~s~~~~e~L~~ 158 (414)
T PF07959_consen 130 S----------GAVLPDGNVLLDSGIVFFSSKAVESLLY 158 (414)
T ss_pred C----------CcccCCCcccccccceeccHHHHHHHHH
Confidence 0 1111223346799999999888776654
No 237
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=98.04 E-value=0.00032 Score=73.99 Aligned_cols=212 Identities=19% Similarity=0.268 Sum_probs=123.2
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHh----CCCc-eEEEEecCC-hHHHHHHHHHhhhc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNIS-KIYVLTQFN-SASLNRHLSRAYAS 160 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~----~gi~-~I~Iv~~~~-~~~i~~~l~~~~~~ 160 (521)
..++.+|+||||.||||+ ...||.|+||.....+++..++.+.. .|.. ..+|-++++ .+...++|.+-+..
T Consensus 54 ~~kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~ 130 (420)
T PF01704_consen 54 LGKVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGL 130 (420)
T ss_dssp TTCEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGS
T ss_pred hCCEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCC
Confidence 357999999999999998 57899999997666889888887754 3432 456666654 58899999982221
Q ss_pred cCCC-CcCCCcEEEeecccC-C----C-----CCCC-CCChHHHHHHHH-----HHhhhcCcceEEEEeCCeeccccHHH
Q 009971 161 NMGG-YKNEGFVEVLAAQQS-P----E-----NPNW-FQGTADAVRQYL-----WLFEEHNVLEFLVLAGDHLYRMDYER 223 (521)
Q Consensus 161 ~~~~-~~~~~~v~vl~~~q~-~----~-----~~~~-~~Gt~~al~~~~-----~~l~~~~~~~~Lvl~gD~l~~~dl~~ 223 (521)
+... .|.+..+..+..... + . ...| +.|.++-..... +.+.....+++.+.+.|.|...-=..
T Consensus 131 ~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~ 210 (420)
T PF01704_consen 131 DVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPV 210 (420)
T ss_dssp SCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HH
T ss_pred CcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHH
Confidence 1110 112222222211110 0 0 0123 457766443322 23333467899999999976532234
Q ss_pred HHHHHHhcCCcEEEEEEecCcccCcceeEEE-eCCCCCeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEEE
Q 009971 224 FIQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIY 302 (521)
Q Consensus 224 ll~~h~~~~aditi~~~~~~~~~~~~~g~v~-~d~~grV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GIy 302 (521)
++..+.++++++.+-+.+....+ ..-|.+. .+..-+|+++.+-|.......-. .....+.++|-.
T Consensus 211 ~lG~~~~~~~~~~~evv~Kt~~d-ek~Gvl~~~~G~~~vvEysqip~~~~~~~~~-------------~~~~~~FntnNi 276 (420)
T PF01704_consen 211 FLGYMIEKNADFGMEVVPKTSPD-EKGGVLCRYDGKLQVVEYSQIPKEHMAEFKD-------------IKGFLLFNTNNI 276 (420)
T ss_dssp HHHHHHHTT-SEEEEEEE-CSTT-TSSEEEEEETTEEEEEEGGGS-HHGHHHHTS-------------TTTSBEEEEEEE
T ss_pred HHHHHHhccchhheeeeecCCCC-CceeEEEEeCCccEEEEeccCCHHHHHhhhc-------------cccceEEEecee
Confidence 77888888999877776643322 2345544 33333677777766552211000 011346788888
Q ss_pred EEeHHHHHHHHhh
Q 009971 303 VISKDVMLNLLRD 315 (521)
Q Consensus 303 ifs~~vl~~ll~~ 315 (521)
.|+-+.++++++.
T Consensus 277 ~~~l~~l~~~~~~ 289 (420)
T PF01704_consen 277 WFSLDFLKRLLER 289 (420)
T ss_dssp EEEHHHHHHHHHT
T ss_pred eEEHHHHHHHHHh
Confidence 9999999888764
No 238
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.01 E-value=2.2e-05 Score=66.70 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=8.4
Q ss_pred eEEe-eeEECCCCEECCC
Q 009971 412 CKIH-HSVVGLRSCISEG 428 (521)
Q Consensus 412 ~~I~-~s~ig~~~~Ig~~ 428 (521)
+.|. ++.|+++|.|...
T Consensus 22 v~IG~~~~Ig~~~~i~~~ 39 (109)
T cd04647 22 ITIGDNVLIGPNVTIYDH 39 (109)
T ss_pred eEECCCCEECCCCEEECC
Confidence 3343 4555555555443
No 239
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=98.00 E-value=0.0001 Score=69.47 Aligned_cols=115 Identities=23% Similarity=0.346 Sum_probs=80.6
Q ss_pred cEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHhCC-CceEEEEecCCh--HHHHHHHHHhhhccCCCC
Q 009971 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNS--ASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~--~~i~~~l~~~~~~~~~~~ 165 (521)
++.+||-|-=.+|||.- |.|+|++|+ |||+++|+++.++. +++++|.|.... +.+..+..+
T Consensus 3 ~I~~IiQARmgStRLpg------KvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~--------- 66 (241)
T COG1861 3 MILVIIQARMGSTRLPG------KVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRS--------- 66 (241)
T ss_pred cEEEEeeecccCccCCc------chhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHHH---------
Confidence 34444444445578863 999999987 99999999999875 789999997443 445555544
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHH-HHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHhcCCc
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTAD-AVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDAD 234 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~-al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~ad 234 (521)
.+ +.++ .|+.+ .+......++....+.++=+.||. +.+.+ +...++.|.++++|
T Consensus 67 --~G-~~vf------------rGs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaD 123 (241)
T COG1861 67 --HG-FYVF------------RGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGAD 123 (241)
T ss_pred --cC-eeEe------------cCCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 12 2222 45544 444555556555557888999999 77666 78889999998887
No 240
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=97.99 E-value=2.3e-05 Score=72.61 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=6.7
Q ss_pred EECCCCEECCCCEE
Q 009971 418 VVGLRSCISEGAII 431 (521)
Q Consensus 418 ~ig~~~~Ig~~~~I 431 (521)
.||+++.||.|+.|
T Consensus 121 tIg~~V~IGagAkI 134 (194)
T COG1045 121 TIGNGVYIGAGAKI 134 (194)
T ss_pred ccCCCeEECCCCEE
Confidence 44445555554443
No 241
>PLN02357 serine acetyltransferase
Probab=97.99 E-value=3.2e-05 Score=78.85 Aligned_cols=27 Identities=15% Similarity=0.448 Sum_probs=13.9
Q ss_pred eeCCCCEEeeeEECCCCEECCCcEEeC
Q 009971 460 GIGKNSHIKRAIIDKNARIGDNVKIVN 486 (521)
Q Consensus 460 ~Ig~~~~i~~~ii~~~~~Ig~~~~i~~ 486 (521)
.||.+++|.+.+-...+.+|.-+++.+
T Consensus 304 ~IGAgSVV~~dVP~~~~v~G~PArvv~ 330 (360)
T PLN02357 304 KIGAGSVVLKDVPPRTTAVGNPARLIG 330 (360)
T ss_pred EECCCCEECcccCCCcEEECCCeEEEc
Confidence 555555555544444444555555544
No 242
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=97.96 E-value=0.00058 Score=72.98 Aligned_cols=209 Identities=13% Similarity=0.173 Sum_probs=123.4
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecC--CCcchhHHHHHHhHhC--------------CC-ceEEEEecCC-hHH
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLG--ANYRLIDIPVSNCLNS--------------NI-SKIYVLTQFN-SAS 149 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~--G~~pLI~~~l~~l~~~--------------gi-~~I~Iv~~~~-~~~ 149 (521)
.++.+|+||||.||||+ ...||.|++|+ .++++++...+++... +. =..+|-+.+. .+.
T Consensus 115 gkvavvlLAGGqGTRLG---~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~ 191 (493)
T PLN02435 115 GKLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEA 191 (493)
T ss_pred CCEEEEEeCCCcccccC---CCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHH
Confidence 57889999999999999 67899999873 2248999998886321 11 1346677644 578
Q ss_pred HHHHHHHhhhccCCCCcCCCcEEEeeccc-------------CCCCCCC-CCChHHHHHHH-----HHHhhhcCcceEEE
Q 009971 150 LNRHLSRAYASNMGGYKNEGFVEVLAAQQ-------------SPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLV 210 (521)
Q Consensus 150 i~~~l~~~~~~~~~~~~~~~~v~vl~~~q-------------~~~~~~~-~~Gt~~al~~~-----~~~l~~~~~~~~Lv 210 (521)
..+||.+...|++.. ..|.++.... ++..-.| +.|.++-.... ++.+.....+++.+
T Consensus 192 T~~ff~~~~~FGl~~----~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v 267 (493)
T PLN02435 192 TRKFFESHKYFGLEA----DQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDC 267 (493)
T ss_pred HHHHHHhCCCCCCCc----cceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEE
Confidence 999998743333211 1122221111 1111112 56776644422 22333346789999
Q ss_pred EeCCe-eccccHHHHHHHHHhcCCcEEEEEEecCcccCcceeEEEe-CCCC--CeEEeeeCCChhhhhhcccccccccCC
Q 009971 211 LAGDH-LYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKI-DEEG--RIIEFSEKPKGEQLKAMKVDTTILGLD 286 (521)
Q Consensus 211 l~gD~-l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~~-d~~g--rV~~i~ekp~~~~~~~~~~~~~~~~~~ 286 (521)
.+.|. +...--..++-.+..++.++.+-+.+.... ...-|.+.. +.+| .|++|.|-+...... . +
T Consensus 268 ~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~-~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~-~---------~ 336 (493)
T PLN02435 268 YGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYP-QEKVGVFVRRGKGGPLTVVEYSELDQAMASA-I---------N 336 (493)
T ss_pred EecccccccccCHHHHHHHHhcCCceEEEeeecCCC-CCceeEEEEecCCCCEEEEEeccCCHHHHhc-c---------C
Confidence 99999 454333457778888889877765543211 234466654 2344 488887765432210 0 0
Q ss_pred chhhccCCceeeEEEEEEeHHHHHHHHh
Q 009971 287 DERAKEMPYIASMGIYVISKDVMLNLLR 314 (521)
Q Consensus 287 ~~~~~~~~~l~~~GIyifs~~vl~~ll~ 314 (521)
+..........+++.++|+-++|+++..
T Consensus 337 ~~~g~L~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 337 QQTGRLRYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred ccccccccchhhHHHhhccHHHHHHHHH
Confidence 0001122357788999999999987643
No 243
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=2.6e-05 Score=76.13 Aligned_cols=64 Identities=20% Similarity=0.299 Sum_probs=41.9
Q ss_pred cccCCCcccCCCCcCCCceee-------cccccceEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEE
Q 009971 374 FYDRSAPIYTQPRYLPPSKML-------DADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLM 437 (521)
Q Consensus 374 ~~~~~~~i~~~~~~~~~~~i~-------~~~i~~~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~ 437 (521)
|++|++.+.+.++++|.+.|+ +.++.+|+|-++|+|.+ +++-||+||.+++||.+++++..-+.
T Consensus 290 yIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~ 361 (407)
T KOG1460|consen 290 YIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVE 361 (407)
T ss_pred EEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccc
Confidence 556665555555555544443 44556677777787776 77777888888888888777755443
No 244
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.76 E-value=7.4e-05 Score=70.16 Aligned_cols=15 Identities=40% Similarity=0.680 Sum_probs=8.3
Q ss_pred EEECCCCEECCCccC
Q 009971 507 VTIIKDALIPSGTII 521 (521)
Q Consensus 507 v~I~~~~~i~~gsvi 521 (521)
|+||+|++|++||+|
T Consensus 219 V~IGegavIaAGsvV 233 (269)
T KOG4750|consen 219 VTIGEGAVIAAGSVV 233 (269)
T ss_pred eeECCCcEEeccceE
Confidence 455555555555553
No 245
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=97.74 E-value=3.4e-05 Score=67.21 Aligned_cols=81 Identities=15% Similarity=0.225 Sum_probs=41.5
Q ss_pred cceEECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEE
Q 009971 399 TDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARI 478 (521)
Q Consensus 399 ~~~~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~I 478 (521)
+.++|-+||.|.. .+.+..+|..|.++.++.|....-.-+ ..-+-.+.+||+- +.|+++|++.-+.|+..+.+
T Consensus 38 GKtIv~~g~iIRG-DLAnVr~GryCV~ksrsvIRPp~K~FS---Kg~affp~hiGdh---VFieE~cVVnAAqIgsyVh~ 110 (184)
T KOG3121|consen 38 GKTIVEEGVIIRG-DLANVRIGRYCVLKSRSVIRPPMKIFS---KGPAFFPVHIGDH---VFIEEECVVNAAQIGSYVHL 110 (184)
T ss_pred CcEEEeeCcEEec-ccccceEcceEEeccccccCCchHHhc---CCceeeeeeecce---EEEecceEeehhhheeeeEe
Confidence 3467777888775 223566777777777777765421000 0000011222221 24555555555556666666
Q ss_pred CCCcEEeC
Q 009971 479 GDNVKIVN 486 (521)
Q Consensus 479 g~~~~i~~ 486 (521)
|+|++|++
T Consensus 111 GknaviGr 118 (184)
T KOG3121|consen 111 GKNAVIGR 118 (184)
T ss_pred ccceeEcC
Confidence 66666655
No 246
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.0017 Score=67.98 Aligned_cols=179 Identities=20% Similarity=0.298 Sum_probs=109.4
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHh----CCCc-eEEEEecCChHHHHHHHHHhhhcc
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNIS-KIYVLTQFNSASLNRHLSRAYASN 161 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~----~gi~-~I~Iv~~~~~~~i~~~l~~~~~~~ 161 (521)
-.++.+|+||||.||||+ ..-||.+++|..++++++.+++.++. .+++ ..+|-+..+.++-..++.....++
T Consensus 103 ~~klAvl~LaGGqGtrlG---~~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y~~ 179 (472)
T COG4284 103 LGKLAVLKLAGGQGTRLG---CDGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDYFG 179 (472)
T ss_pred cCceEEEEecCCcccccc---cCCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhhcC
Confidence 357899999999999999 57899999998334999999888754 3443 456666677766666655422222
Q ss_pred CC----CCcCCCcEE-EeecccCC----CC--CCC-CCChHH---HHHH--HHHHhhhcCcceEEEEeCCeecc-ccHHH
Q 009971 162 MG----GYKNEGFVE-VLAAQQSP----EN--PNW-FQGTAD---AVRQ--YLWLFEEHNVLEFLVLAGDHLYR-MDYER 223 (521)
Q Consensus 162 ~~----~~~~~~~v~-vl~~~q~~----~~--~~~-~~Gt~~---al~~--~~~~l~~~~~~~~Lvl~gD~l~~-~dl~~ 223 (521)
+. ..|.+.... ++.....+ .+ ..| +.|.++ +|.. .++.+.....+.+.|.+.|.|.- .|+.
T Consensus 180 ~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~~- 258 (472)
T COG4284 180 LDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDLK- 258 (472)
T ss_pred CCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCHH-
Confidence 10 011221111 22211111 11 234 456654 3332 12222234678899999999554 5644
Q ss_pred HHHHHHhcCCcEEEEEEecCcccCcceeEEE-eCCCCCeEEeeeCCCh
Q 009971 224 FIQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKG 270 (521)
Q Consensus 224 ll~~h~~~~aditi~~~~~~~~~~~~~g~v~-~d~~grV~~i~ekp~~ 270 (521)
++..+..++.+.++=+...... ..+-|++. .|..-||+++.+-|..
T Consensus 259 ~lg~~~~~~~e~~~e~t~Kt~a-~ekvG~Lv~~~g~~rllEysev~~~ 305 (472)
T COG4284 259 FLGFMAETNYEYLMETTDKTKA-DEKVGILVTYDGKLRLLEYSEVPNE 305 (472)
T ss_pred HHHHHHhcCcceeEEEeecccc-cccceEEEEeCCceEEEEEecCChh
Confidence 6777888888877655542221 23456655 7777899999987775
No 247
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.72 E-value=7.8e-05 Score=70.14 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=23.9
Q ss_pred cceEECCCcEEce-eEEe---eeEECCCCEECCCCEEcce
Q 009971 399 TDSVIGEGCVIKN-CKIH---HSVVGLRSCISEGAIIEDT 434 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~---~s~ig~~~~Ig~~~~I~~s 434 (521)
.+..+|..|.++. |.+. +..||.++.++++|.|...
T Consensus 66 ~~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~ 105 (190)
T COG0110 66 KNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTN 105 (190)
T ss_pred cceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecC
Confidence 3567788888876 4432 4567777777777777654
No 248
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.61 E-value=0.00043 Score=64.54 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=63.8
Q ss_pred CCccceecCC--CcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCC
Q 009971 110 RAKPAVPLGA--NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQ 187 (521)
Q Consensus 110 ~PK~LlpI~G--~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~ 187 (521)
.+|+|+++.| + |||+|+++.+.. .+++|+|+++.+. .+ .. .+ +.++.... . ..
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~~-~~~~iivv~~~~~-~~----~~-----------~~-~~~i~d~~--~----g~ 57 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVGQ-RCAPVFVMAAPGQ-PL----PE-----------LP-APVLRDEL--R----GL 57 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHhh-cCCEEEEECCCCc-cc----cc-----------CC-CCEeccCC--C----CC
Confidence 5899999997 7 999999998775 5899999997542 11 00 00 22332211 1 26
Q ss_pred ChHHHHHHHHHHhhhcCcceEEEEeCCe-ecccc-HHHHHHHHHhc
Q 009971 188 GTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRET 231 (521)
Q Consensus 188 Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~ 231 (521)
|...++..++........+.+++++||+ +.+.+ +.++++.+...
T Consensus 58 gpl~~~~~gl~~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~ 103 (178)
T PRK00576 58 GPLPATGRGLRAAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQT 103 (178)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhcC
Confidence 7777777666443222357999999999 66655 77777765433
No 249
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.51 E-value=0.00024 Score=79.96 Aligned_cols=91 Identities=14% Similarity=0.252 Sum_probs=46.3
Q ss_pred eEECCCcEEceeEEeeeEEC-CCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEEC
Q 009971 401 SVIGEGCVIKNCKIHHSVVG-LRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIG 479 (521)
Q Consensus 401 ~~Ig~~~~I~~~~I~~s~ig-~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig 479 (521)
+.||++|.|+. ..++. +.+.||++|.|.+.+.+...-+|. . .-.+++++||++|.||
T Consensus 598 a~IG~~v~i~~----~~~~~~dlv~IGd~~~I~~~~~i~~h~~~~-----------~-------~~~~~~v~IG~~~~IG 655 (695)
T TIGR02353 598 VKIGRGVYIDG----TDLTERDLVTIGDDSTLNEGSVIQTHLFED-----------R-------VMKSDTVTIGDGATLG 655 (695)
T ss_pred CEECCCeEECC----eeccCCCCeEECCCCEECCCCEEEeccccc-----------c-------ccccCCeEECCCCEEC
Confidence 44555555553 22332 336888888887655443211111 0 0012345555555555
Q ss_pred CCcEEeCCCccCCceeecCCeEEcCCeEEECCCCEECCCcc
Q 009971 480 DNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTI 520 (521)
Q Consensus 480 ~~~~i~~~~~~~~~~~~~~~~~I~~g~v~I~~~~~i~~gsv 520 (521)
.++++.. +.++|+++.|+++ .++.++..+++|++
T Consensus 656 ~~a~V~~------g~~IGd~a~Ig~~-SvV~~g~~vp~~s~ 689 (695)
T TIGR02353 656 PGAIVLY------GVVMGEGSVLGPD-SLVMKGEEVPAHTR 689 (695)
T ss_pred CCCEECC------CCEECCCCEECCC-CEEcCCcccCCCCE
Confidence 5555543 3455556666666 55555555666553
No 250
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.46 E-value=0.00039 Score=78.38 Aligned_cols=92 Identities=18% Similarity=0.320 Sum_probs=53.7
Q ss_pred ceEECCCcEEceeEE---eeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-eeEECCC
Q 009971 400 DSVIGEGCVIKNCKI---HHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKN 475 (521)
Q Consensus 400 ~~~Ig~~~~I~~~~I---~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~ 475 (521)
.+.||+||+|+...+ ....||++|.|+++|.|.+..+.+.. +--| |+.||+||.|. +|+|.++
T Consensus 112 Ga~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~~-----------l~~g--~i~IG~~~~IG~~s~I~~g 178 (695)
T TIGR02353 112 GAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERGR-----------LHTG--PVTLGRDAFIGTRSTLDID 178 (695)
T ss_pred CCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcccCCCCc-----------eeec--CcEECCCcEECCCCEEcCC
Confidence 456788888876322 24678888888888887654332210 0001 25666666665 6666666
Q ss_pred CEECCCcEEeCCCccCCceeecCCeEEcC
Q 009971 476 ARIGDNVKIVNSDSVQEAARETDGYFIKS 504 (521)
Q Consensus 476 ~~Ig~~~~i~~~~~~~~~~~~~~~~~I~~ 504 (521)
++||++++|.....+.++..+.++.....
T Consensus 179 ~~Igd~a~vgagS~V~~g~~v~~~~~~~G 207 (695)
T TIGR02353 179 TSIGDGAQLGHGSALQGGQSIPDGERWHG 207 (695)
T ss_pred CEECCCCEECCCCEecCCcccCCCCEEEe
Confidence 66666666666555555444444444433
No 251
>PLN02830 UDP-sugar pyrophosphorylase
Probab=97.42 E-value=0.024 Score=62.55 Aligned_cols=218 Identities=14% Similarity=0.136 Sum_probs=125.1
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceec---CCCcchhHHHHHHhHhC-----------CC-ceEEEEecCC-hHHH
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPL---GANYRLIDIPVSNCLNS-----------NI-SKIYVLTQFN-SASL 150 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI---~G~~pLI~~~l~~l~~~-----------gi-~~I~Iv~~~~-~~~i 150 (521)
..++.+|+||||.||||+ ..-||.++|+ .|+ ++++..++.+... +. --++|-+.++ .+..
T Consensus 126 l~kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gk-t~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T 201 (615)
T PLN02830 126 AGNAAFVLVAGGLGERLG---YSGIKVALPTETATGT-CYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHART 201 (615)
T ss_pred hCcEEEEEecCCcccccC---CCCCCcceecccCCCC-cHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHH
Confidence 358999999999999999 5789999998 244 9999999987542 11 2457777755 4788
Q ss_pred HHHHHHhhhccCCC----CcCCCcEEEeecc-c-----C--CCCCC-CCCChHHHHHHHH-----HHhhhcCcceEEEEe
Q 009971 151 NRHLSRAYASNMGG----YKNEGFVEVLAAQ-Q-----S--PENPN-WFQGTADAVRQYL-----WLFEEHNVLEFLVLA 212 (521)
Q Consensus 151 ~~~l~~~~~~~~~~----~~~~~~v~vl~~~-q-----~--~~~~~-~~~Gt~~al~~~~-----~~l~~~~~~~~Lvl~ 212 (521)
.++|.+...|++.. .|.+..+..+... . . +.... .+.|.++-..... +.+.....+++.+.+
T Consensus 202 ~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~ 281 (615)
T PLN02830 202 LKLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQ 281 (615)
T ss_pred HHHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEe
Confidence 99998843333211 1122222222111 0 0 01111 2557765433322 233334678999999
Q ss_pred CCe-eccccHHHHHHHHHhcCCcEEEEEEecCcccCcceeEEEe--CCCCC----eEEeeeCCChhhhhhcccccccccC
Q 009971 213 GDH-LYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKI--DEEGR----IIEFSEKPKGEQLKAMKVDTTILGL 285 (521)
Q Consensus 213 gD~-l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~~--d~~gr----V~~i~ekp~~~~~~~~~~~~~~~~~ 285 (521)
.|. |...-...++-.+..++.++.+-+.+... ...-|+++. ..+|+ +++|.|.+..-. ....+..-+..
T Consensus 282 vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~--~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll~--~a~~p~g~l~~ 357 (615)
T PLN02830 282 DTNGLVFKAIPAALGVSATKGFDMNSLAVPRKA--KEAIGAIAKLTHKDGREMVINVEYNQLDPLLR--ATGHPDGDVND 357 (615)
T ss_pred ccchhhhcccHHHhHHHHhcCCceEEEEEECCC--CcccceEEEEecCCCCeeeEEEeecccCHHHH--hccCCCccccc
Confidence 999 44433477888888899998777665432 334555553 23344 446666543311 11111111110
Q ss_pred CchhhccCCceeeEEEEEEeHHHHHHHHhh
Q 009971 286 DDERAKEMPYIASMGIYVISKDVMLNLLRD 315 (521)
Q Consensus 286 ~~~~~~~~~~l~~~GIyifs~~vl~~ll~~ 315 (521)
... .+.+-.++...+++-+.+.+++++
T Consensus 358 ~~~---~s~FPgNtN~L~v~L~a~~~~l~~ 384 (615)
T PLN02830 358 ETG---YSPFPGNINQLILKLGPYVKELAK 384 (615)
T ss_pred ccc---cccCCCCceeeEeeHHHHHHHHHh
Confidence 000 112224788889998777777764
No 252
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.40 E-value=0.00015 Score=71.98 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=47.5
Q ss_pred eEECCCcEEce-eEEe-eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeEECCCCEE
Q 009971 401 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARI 478 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~I 478 (521)
+.|-.+..+.. +.++ +|.||+++.||++|+|++.+.+.+ +.+-.+. .++.++.|..++++.++.|
T Consensus 259 ~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~----------s~il~~~---~~~~~s~i~s~ivg~~~~I 325 (371)
T KOG1322|consen 259 SKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQD----------STILGAD---YYETHSEISSSIVGWNVPI 325 (371)
T ss_pred ccccccEeeccccccCCccEECCCceECCCcEecCceEEEe----------eEEEccc---eechhHHHHhhhccccccc
Confidence 33333344444 5555 677777777777777777766643 2333333 4666677777788888888
Q ss_pred CCCcEEeCCCccC
Q 009971 479 GDNVKIVNSDSVQ 491 (521)
Q Consensus 479 g~~~~i~~~~~~~ 491 (521)
|.+++|-+.+.++
T Consensus 326 G~~~~id~~a~lG 338 (371)
T KOG1322|consen 326 GIWARIDKNAVLG 338 (371)
T ss_pred cCceEEecccEec
Confidence 8887776643333
No 253
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.29 E-value=0.0015 Score=61.42 Aligned_cols=9 Identities=11% Similarity=0.427 Sum_probs=3.5
Q ss_pred CEECCCCEE
Q 009971 423 SCISEGAII 431 (521)
Q Consensus 423 ~~Ig~~~~I 431 (521)
.+||+++.+
T Consensus 88 i~ig~~~~i 96 (190)
T COG0110 88 ITIGDNVVV 96 (190)
T ss_pred eEECCCceE
Confidence 333333333
No 254
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=97.15 E-value=0.0031 Score=56.84 Aligned_cols=13 Identities=15% Similarity=0.097 Sum_probs=7.2
Q ss_pred eeEECCCCEECCC
Q 009971 416 HSVVGLRSCISEG 428 (521)
Q Consensus 416 ~s~ig~~~~Ig~~ 428 (521)
++.|+.++.|..+
T Consensus 27 ~~~I~~~v~i~~~ 39 (145)
T cd03349 27 FCSIAPGVKIGLG 39 (145)
T ss_pred CCEECCCCEECCC
Confidence 4555555555554
No 255
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.14 E-value=0.001 Score=58.68 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=18.3
Q ss_pred eEECCCcEEce-eEEe-eeEECCCCEECCCCEE
Q 009971 401 SVIGEGCVIKN-CKIH-HSVVGLRSCISEGAII 431 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I 431 (521)
+.|.+++++-. +.|+ +.+|+++|.|.+.+++
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~ 41 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVF 41 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEE
Confidence 45677777664 5555 4566666655555544
No 256
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.13 E-value=0.00099 Score=62.76 Aligned_cols=36 Identities=19% Similarity=0.445 Sum_probs=21.1
Q ss_pred EECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECC
Q 009971 402 VIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGA 439 (521)
Q Consensus 402 ~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~ 439 (521)
.||+|-.+.++ ...+||+-+.||+++.|...+-++.
T Consensus 156 ~ig~gilldha--tgvvigeTAvvg~~vSilH~Vtlgg 191 (269)
T KOG4750|consen 156 KIGKGILLDHA--TGVVIGETAVVGDNVSILHPVTLGG 191 (269)
T ss_pred hcccceeeccc--cceeecceeEeccceeeecceeecc
Confidence 36777666652 2456666666666666655555554
No 257
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.14 Score=52.86 Aligned_cols=348 Identities=18% Similarity=0.197 Sum_probs=167.8
Q ss_pred ccEEEEEEeCCCCCCCCccccCCCccceecCCCcchhHHHHHHhHh----CCCceEEEE-ecCCh-HHHHHHHHHhhhcc
Q 009971 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNISKIYVL-TQFNS-ASLNRHLSRAYASN 161 (521)
Q Consensus 88 ~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~----~gi~~I~Iv-~~~~~-~~i~~~l~~~~~~~ 161 (521)
.++..+=|-||.||-|+ ..-||.++++-.....+|-++..... .+++--.|+ ..++. ++...++.+.+..+
T Consensus 102 ~KLavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~k 178 (498)
T KOG2638|consen 102 NKLAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGSK 178 (498)
T ss_pred hheEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCCc
Confidence 35777889999999998 67899999996555877765554432 445433333 44554 56666676643322
Q ss_pred CC--CCcCCCcEEE-----eeccc---CCCCCCC-CCChHHHHHHHH------HHhhhcCcceEEEEeCCeecc-ccHHH
Q 009971 162 MG--GYKNEGFVEV-----LAAQQ---SPENPNW-FQGTADAVRQYL------WLFEEHNVLEFLVLAGDHLYR-MDYER 223 (521)
Q Consensus 162 ~~--~~~~~~~v~v-----l~~~q---~~~~~~~-~~Gt~~al~~~~------~~l~~~~~~~~Lvl~gD~l~~-~dl~~ 223 (521)
+. .+-...|-++ ++... ....+.| +.|.++-..... .++. ...+.+++.+.|.+.. .|+.
T Consensus 179 v~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~lla-qGkEylFVSNiDNLGAtvDL~- 256 (498)
T KOG2638|consen 179 VDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLA-QGKEYLFVSNIDNLGATVDLN- 256 (498)
T ss_pred eeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHh-CCceEEEEeccccccceeeHH-
Confidence 11 1101111111 11111 1122457 446655333221 2232 2568999999999764 5654
Q ss_pred HHHHHHhcCCcEEEEEEecCcccCcceeEEEeCCCC--CeEEeeeCCChhhhhhcccccccccCCchhhccCCceeeEEE
Q 009971 224 FIQAHRETDADITVAALPMDEKRATAFGLMKIDEEG--RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGI 301 (521)
Q Consensus 224 ll~~h~~~~aditi~~~~~~~~~~~~~g~v~~d~~g--rV~~i~ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI 301 (521)
+++.....+....|=+++....+. .-|.+ ++-+| |++++..-|.....+-..++ .-.+.++.-
T Consensus 257 ILn~~i~~~~ey~MEvTdKT~aDv-KgGtL-i~y~G~lrlLEiaQVP~ehv~eFkS~k-------------kFkifNTNN 321 (498)
T KOG2638|consen 257 ILNHVINNNIEYLMEVTDKTRADV-KGGTL-IQYEGKLRLLEIAQVPKEHVDEFKSIK-------------KFKIFNTNN 321 (498)
T ss_pred HHHHHhcCCCceEEEecccchhhc-ccceE-EeecCEEEEEEeccCChhHhhhhccce-------------eEEEeccCC
Confidence 344444556665555544322111 12322 22345 56666665554322100000 012445555
Q ss_pred EEEeHHHHHHHHhhhCCCC--------CChhhcchHh------hhhCCceEEEEEe-cceEEecCCHHHHHHHhhhcccC
Q 009971 302 YVISKDVMLNLLRDKFPGA--------NDFGSEVIPG------ATSIGMRVQAYLY-DGYWEDIGTIEAFYNANLGITKK 366 (521)
Q Consensus 302 yifs~~vl~~ll~~~~~~~--------~d~~~dil~~------li~~~~~I~~~~~-~g~w~dIgt~edy~~An~~ll~~ 366 (521)
-.++-+.+++++++..-.. -+.+.++|+. +++.=..-.+..+ ...|..+.|-.|++.....+-.-
T Consensus 322 lWinLkavKrlve~~~l~meIi~N~kti~~~~~viQleTa~GaaIk~F~na~gv~VpRsRFlPVKt~sDLlLv~S~Ly~l 401 (498)
T KOG2638|consen 322 LWINLKAVKKLVEENALNMEIIVNPKTIDRGIEVIQLETAAGAAIKFFDNAIGVNVPRSRFLPVKTCSDLLLVMSNLYDL 401 (498)
T ss_pred eEEehHHHHHHhhcCcccceeecChhhccCCceEEEEhhhhhHHHHhCCCceeeeccccccccccccccceeeecceeec
Confidence 5566667777776532110 1112233332 1221011122222 34577777777765544433221
Q ss_pred CCCCccccccCCCcccCCCCcC--CCce-ee--cccccce--EECCCcEEceeEEeeeEECCCCEECCCCEEcceEEECC
Q 009971 367 PIPDFRYFYDRSAPIYTQPRYL--PPSK-ML--DADVTDS--VIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGA 439 (521)
Q Consensus 367 ~~~~~~~~~~~~~~i~~~~~~~--~~~~-i~--~~~i~~~--~Ig~~~~I~~~~I~~s~ig~~~~Ig~~~~I~~s~i~~~ 439 (521)
....+. .++ .|.. +|.. ++ ..++... .+-.--.| ..+.+-.|.-++..|.++.+.+.+++-+
T Consensus 402 d~Gsl~--l~~-------~r~~~t~P~vkLg~~F~kv~~f~~rfp~iP~i--leLdhLtVsGdV~FGknV~LkGtViIia 470 (498)
T KOG2638|consen 402 DNGSLT--LSP-------SRFGPTPPLVKLGSEFKKVEDFLGRFPGIPDI--LELDHLTVSGDVWFGKNVSLKGTVIIIA 470 (498)
T ss_pred cCCeEE--ech-------hhcCCCCCeeecchhhhHHHHHHhcCCCCCcc--ceeceEEEeccEEeccceEEeeEEEEEe
Confidence 111110 111 1111 1111 11 1112211 11111111 1223555566677788888877766543
Q ss_pred ccccccccccccccCCCcceeeCCCCEEeeeEECCCCEECC
Q 009971 440 DYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGD 480 (521)
Q Consensus 440 ~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~Ig~ 480 (521)
+ ..-++.|-+|+++++++|-.|++|-+
T Consensus 471 ~--------------~~~~i~IP~gsVLEn~~v~gn~~ile 497 (498)
T KOG2638|consen 471 N--------------EGDRIDIPDGSVLENKIVSGNLRILE 497 (498)
T ss_pred c--------------CCCeeecCCCCeeecceEeccccccc
Confidence 1 12236788999999998888887754
No 258
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=96.94 E-value=0.0014 Score=57.32 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=10.1
Q ss_pred cceEECCCcEEce-eEEe
Q 009971 399 TDSVIGEGCVIKN-CKIH 415 (521)
Q Consensus 399 ~~~~Ig~~~~I~~-~~I~ 415 (521)
.++.||..|+++. |.|+
T Consensus 53 AnVr~GryCV~ksrsvIR 70 (184)
T KOG3121|consen 53 ANVRIGRYCVLKSRSVIR 70 (184)
T ss_pred ccceEcceEEeccccccC
Confidence 4566666666665 5554
No 259
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.85 E-value=0.0036 Score=59.29 Aligned_cols=68 Identities=21% Similarity=0.209 Sum_probs=36.3
Q ss_pred eeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-eeEECCCCEECCCcEEeCCCccCCce
Q 009971 416 HSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARIGDNVKIVNSDSVQEAA 494 (521)
Q Consensus 416 ~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~Ig~~~~i~~~~~~~~~~ 494 (521)
-.++|+.+.+|+++.|.+.++..+ +.|+.+|.+. |.++..++.||+.+.|...-.+..+-
T Consensus 33 ~~V~g~~iivge~v~i~Gdiva~d-------------------iridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdL 93 (277)
T COG4801 33 YGVVGEEIIVGERVRIYGDIVAKD-------------------IRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDL 93 (277)
T ss_pred eeeeeeeEEeccCcEEeeeEEecc-------------------eeeeeeeEeeccEEEcCceEEeccceeeeeEEEeccc
Confidence 445666666666666666555543 4566666664 55555566666665555443333333
Q ss_pred eecCCeEE
Q 009971 495 RETDGYFI 502 (521)
Q Consensus 495 ~~~~~~~I 502 (521)
.+|+.+.|
T Consensus 94 dig~dV~I 101 (277)
T COG4801 94 DIGADVII 101 (277)
T ss_pred ccccceEE
Confidence 33333333
No 260
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=96.84 E-value=0.0011 Score=44.48 Aligned_cols=33 Identities=30% Similarity=0.494 Sum_probs=21.6
Q ss_pred ceEECCCcEEce-eEEe-eeEECCCCEECCCCEEc
Q 009971 400 DSVIGEGCVIKN-CKIH-HSVVGLRSCISEGAIIE 432 (521)
Q Consensus 400 ~~~Ig~~~~I~~-~~I~-~s~ig~~~~Ig~~~~I~ 432 (521)
++.||++|+|+. +.|. ++.||++|.|++++.|.
T Consensus 1 ~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 1 NVVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp TEEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CCEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 356777777776 5555 67777777777776664
No 261
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.76 E-value=0.0051 Score=58.31 Aligned_cols=68 Identities=24% Similarity=0.320 Sum_probs=44.7
Q ss_pred eEECCCcEEce-eEEeeeEECCCCEECCCCEEcceEEECCccccccccccccccCCCcceeeCCCCEEe-eeEECCCCEE
Q 009971 401 SVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIK-RAIIDKNARI 478 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~-~~ii~~~~~I 478 (521)
.++++...+++ +.|.+.+++.+++|+.+|.+.+.++..++ .-||+.++|. +.++..+--|
T Consensus 34 ~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~d------------------ayiGE~~sI~gkl~v~gdLdi 95 (277)
T COG4801 34 GVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVEND------------------AYIGEFSSIKGKLTVIGDLDI 95 (277)
T ss_pred eeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCc------------------eEEeccceeeeeEEEeccccc
Confidence 34555555554 55556666677777777777777766654 3577777776 5666667777
Q ss_pred CCCcEEeC
Q 009971 479 GDNVKIVN 486 (521)
Q Consensus 479 g~~~~i~~ 486 (521)
|+++.|.+
T Consensus 96 g~dV~Ieg 103 (277)
T COG4801 96 GADVIIEG 103 (277)
T ss_pred ccceEEec
Confidence 77777764
No 262
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=96.48 E-value=0.002 Score=43.13 Aligned_cols=14 Identities=43% Similarity=0.603 Sum_probs=5.4
Q ss_pred EECCCCEECCCcEE
Q 009971 471 IIDKNARIGDNVKI 484 (521)
Q Consensus 471 ii~~~~~Ig~~~~i 484 (521)
+|++++.|++++.|
T Consensus 3 ~Ig~~~~i~~~~~i 16 (36)
T PF00132_consen 3 VIGDNVIIGPNAVI 16 (36)
T ss_dssp EEETTEEEETTEEE
T ss_pred EEcCCCEECCCcEe
Confidence 33333333333333
No 263
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=96.29 E-value=0.0042 Score=41.28 Aligned_cols=30 Identities=30% Similarity=0.542 Sum_probs=15.2
Q ss_pred eEECCCcEEce-eEEeeeEECCCCEECCCCEE
Q 009971 401 SVIGEGCVIKN-CKIHHSVVGLRSCISEGAII 431 (521)
Q Consensus 401 ~~Ig~~~~I~~-~~I~~s~ig~~~~Ig~~~~I 431 (521)
..||++|+|+. |.| ...||++|.|++|+.|
T Consensus 2 v~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI-GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EEE-TTEEE-TT-EE-TSEE-TTEEE-TTEEE
T ss_pred eEECCCEEECccccc-CCEEcCCCEECCCCEE
Confidence 45777888876 554 3555555555555554
No 264
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=95.75 E-value=0.016 Score=38.49 Aligned_cols=13 Identities=46% Similarity=0.588 Sum_probs=4.4
Q ss_pred ECCCCEECCCcEE
Q 009971 472 IDKNARIGDNVKI 484 (521)
Q Consensus 472 i~~~~~Ig~~~~i 484 (521)
||+||.||.++.+
T Consensus 4 IG~~~~ig~~~~i 16 (34)
T PF14602_consen 4 IGDNCFIGANSTI 16 (34)
T ss_dssp E-TTEEE-TT-EE
T ss_pred ECCCEEECccccc
Confidence 4444444444443
No 265
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=95.44 E-value=0.076 Score=50.00 Aligned_cols=86 Identities=17% Similarity=0.196 Sum_probs=59.3
Q ss_pred cchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHh
Q 009971 121 YRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLF 200 (521)
Q Consensus 121 ~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l 200 (521)
+|||+|+++.+...++++++++++. +.+.+++.. + + ++++... . .|...+++.++..+
T Consensus 30 ~~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~-~----------~-v~~i~~~------~--~G~~~si~~al~~~ 87 (195)
T TIGR03552 30 LAMLRDVITALRGAGAGAVLVVSPD--PALLEAARN-L----------G-APVLRDP------G--PGLNNALNAALAEA 87 (195)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh-c----------C-CEEEecC------C--CCHHHHHHHHHHHh
Confidence 4999999999999888888888863 344444332 1 1 2333211 1 38899999998766
Q ss_pred hhcCcceEEEEeCCe-ecc-ccHHHHHHHHH
Q 009971 201 EEHNVLEFLVLAGDH-LYR-MDYERFIQAHR 229 (521)
Q Consensus 201 ~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~ 229 (521)
.. ..+.++++.||+ +.. .++.++++.+.
T Consensus 88 ~~-~~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 88 RE-PGGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred hc-cCCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 43 235899999999 554 56888888653
No 266
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=95.25 E-value=0.34 Score=41.79 Aligned_cols=99 Identities=18% Similarity=0.130 Sum_probs=66.5
Q ss_pred ceecCCCcchhHHHHHHhHhCC--CceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHH
Q 009971 114 AVPLGANYRLIDIPVSNCLNSN--ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD 191 (521)
Q Consensus 114 LlpI~G~~pLI~~~l~~l~~~g--i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~ 191 (521)
++|..+..+++.++++.+.+.+ ..+++|+.+...+...+.+.+.... ......+.. . . ..|.+.
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~---~----~~g~~~ 67 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK------DPRVIRVIN-E---E----NQGLAA 67 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc------CCCeEEEEe-c---C----CCChHH
Confidence 3566666689999999999987 7889999887777777776663221 011111111 1 1 268888
Q ss_pred HHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHH
Q 009971 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHR 229 (521)
Q Consensus 192 al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~ 229 (521)
++..++...+ .+.++++.+|..+..+ +..++..+.
T Consensus 68 ~~~~~~~~~~---~d~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 68 ARNAGLKAAR---GEYILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred HHHHHHHHhc---CCEEEEECCCCccCccHHHHHHHHHh
Confidence 8888877664 4789999999988776 555534443
No 267
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=92.53 E-value=1.5 Score=41.00 Aligned_cols=105 Identities=23% Similarity=0.196 Sum_probs=63.0
Q ss_pred EEEEEEeC---CCCCCCCcccc-CCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCC
Q 009971 90 VLGIILGG---GAGTRLYPLTK-KRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (521)
Q Consensus 90 ~~aVILAa---G~GtRl~PlT~-~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~ 165 (521)
|.+||+-. +.-|||.|.-. +.-+-+ . +-||-.++..+... +.+|.|++.. +.+..+-.+
T Consensus 1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~---~--laML~dvi~Al~~~-~~~i~Vvtpd--e~~~~~a~~--------- 63 (210)
T COG1920 1 MRAIIPVKRLADAKTRLSPVLSAEERENF---A--LAMLVDVLGALAGV-LGEITVVTPD--EEVLVPATK--------- 63 (210)
T ss_pred CceEEeccccCcchhccccccCHHHHHHH---H--HHHHHHHHHHhhhh-cCCceEEcCC--hHhhhhccc---------
Confidence 45677644 56788887522 111221 1 35888999999876 7899999853 222222111
Q ss_pred cCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe-e-ccccHHHHHHHH
Q 009971 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-L-YRMDYERFIQAH 228 (521)
Q Consensus 166 ~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~-l-~~~dl~~ll~~h 228 (521)
.+++.. + +--.++.++++.+.. .+.++|+++|. + ...+++.+++..
T Consensus 64 -----~~vl~d------~----dLN~Ai~aa~~~~~~--p~~v~vvmaDLPLl~~~~i~~~~~~~ 111 (210)
T COG1920 64 -----LEVLAD------P----DLNTAINAALDEIPL--PSEVIVVMADLPLLSPEHIERALSAA 111 (210)
T ss_pred -----ceeeec------c----chHHHHHHHHhhCCC--CcceEEEecccccCCHHHHHHHHHhc
Confidence 134332 1 122467777766653 25699999999 4 456688887754
No 268
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=90.61 E-value=4.4 Score=35.57 Aligned_cols=109 Identities=14% Similarity=0.154 Sum_probs=68.2
Q ss_pred eecCCCcchhHHHHHHhHhC--CCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHH
Q 009971 115 VPLGANYRLIDIPVSNCLNS--NISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (521)
Q Consensus 115 lpI~G~~pLI~~~l~~l~~~--gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~a 192 (521)
+|.-+....|..+|+.+.+. ...+|+|+-+...+...+.+.+.... ...++++...+ ..|.+.+
T Consensus 4 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~-------~~~i~~i~~~~-------n~g~~~~ 69 (169)
T PF00535_consen 4 IPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAES-------DPNIRYIRNPE-------NLGFSAA 69 (169)
T ss_dssp EEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCC-------STTEEEEEHCC-------CSHHHHH
T ss_pred EEeeCCHHHHHHHHHHHhhccCCCEEEEEecccccccccccccccccc-------ccccccccccc-------ccccccc
Confidence 45543335788888888775 45677777654444555555553210 12255554332 1577888
Q ss_pred HHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcEEEEEE
Q 009971 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAAL 240 (521)
Q Consensus 193 l~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~~ 240 (521)
+..++.... .+.++++..|.++..+ +..+++.+.+.+.++.+...
T Consensus 70 ~n~~~~~a~---~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 70 RNRGIKHAK---GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSV 115 (169)
T ss_dssp HHHHHHH-----SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEE
T ss_pred ccccccccc---eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEE
Confidence 888877665 4699999999988777 88999998887776555443
No 269
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=88.93 E-value=0.69 Score=49.14 Aligned_cols=96 Identities=19% Similarity=0.214 Sum_probs=53.0
Q ss_pred CceEEEEEec-ceEEecCCHHHHHHHhhhcccCCCCCccccccCCCcccCCCCcCCCceeecccccceEECCCcEEce-e
Q 009971 335 GMRVQAYLYD-GYWEDIGTIEAFYNANLGITKKPIPDFRYFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKN-C 412 (521)
Q Consensus 335 ~~~I~~~~~~-g~w~dIgt~edy~~An~~ll~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~~~Ig~~~~I~~-~ 412 (521)
+.++.+..+. +.++=+||-.+|++--..-..-.+.... +.. .+........+ ++.|-||++..++.+++ +
T Consensus 226 ~~~l~vv~l~~~~F~H~GTs~E~L~~lt~~~~l~~~~~~-~~~--~~~~~~~~~~~-----~~~VinSil~~~~~vg~~s 297 (414)
T PF07959_consen 226 GTPLNVVPLPNGKFYHFGTSREYLEHLTSDSELGIMRRK-FSH--SPATTPSDSEA-----SSCVINSILEGGVSVGPGS 297 (414)
T ss_pred hccccccccCCceEEEecCCHHHHHhhccCcccccceee-eec--cccccccccCC-----CeeEEEeEecCCceECCCC
Confidence 5677777665 6789999998876543322000000000 000 00000111122 22345677777777776 7
Q ss_pred EEeeeEECCCCEECCCCEEcceEEEC
Q 009971 413 KIHHSVVGLRSCISEGAIIEDTLLMG 438 (521)
Q Consensus 413 ~I~~s~ig~~~~Ig~~~~I~~s~i~~ 438 (521)
+|.+|.|+.++.||++|.|.+.-+..
T Consensus 298 vIe~s~l~~~~~IG~~cIisGv~~~~ 323 (414)
T PF07959_consen 298 VIEHSHLGGPWSIGSNCIISGVDINS 323 (414)
T ss_pred EEEeeecCCCCEECCCCEEECCcccc
Confidence 77788888888888888777665544
No 270
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=87.97 E-value=2.6 Score=40.87 Aligned_cols=49 Identities=24% Similarity=0.178 Sum_probs=36.6
Q ss_pred CChHHHHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcEEEE
Q 009971 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVA 238 (521)
Q Consensus 187 ~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~ 238 (521)
.|-+.++..++.... .+.++++.+|...+.+ +.++++...+.+.+++..
T Consensus 79 ~G~~~a~n~g~~~a~---g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 79 LGLGTAYIHGLKHAS---GDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred CCHHHHHHHHHHHcC---CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 677888887776543 4789999999977755 888888776667776443
No 271
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=86.01 E-value=12 Score=35.11 Aligned_cols=107 Identities=13% Similarity=0.058 Sum_probs=59.6
Q ss_pred eecCCCcchhHHHHHHhHhCC---CceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHH
Q 009971 115 VPLGANYRLIDIPVSNCLNSN---ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD 191 (521)
Q Consensus 115 lpI~G~~pLI~~~l~~l~~~g---i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~ 191 (521)
+|.-.....|...++.+.+.- --+|+||-+...+...+.+.+ +.- ....+.++.... ..|-+.
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~-~~~------~~~~i~~~~~~~-------n~G~~~ 68 (224)
T cd06442 3 IPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRE-LAK------EYPRVRLIVRPG-------KRGLGS 68 (224)
T ss_pred EeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHH-HHH------hCCceEEEecCC-------CCChHH
Confidence 444333245677777776532 346766654333333333332 110 011233432211 268888
Q ss_pred HHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcEEEE
Q 009971 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVA 238 (521)
Q Consensus 192 al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~ 238 (521)
++..++.... .+.++++.+|.....+ +..+++.....+.++...
T Consensus 69 a~n~g~~~a~---gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 113 (224)
T cd06442 69 AYIEGFKAAR---GDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIG 113 (224)
T ss_pred HHHHHHHHcC---CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 8888876554 4788899999977655 888888765566665433
No 272
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=84.23 E-value=14 Score=35.06 Aligned_cols=96 Identities=14% Similarity=0.161 Sum_probs=61.4
Q ss_pred eecCCCc-chhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHHH
Q 009971 115 VPLGANY-RLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAV 193 (521)
Q Consensus 115 lpI~G~~-pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al 193 (521)
+|.-+.. ..|...|+.+.+....+|+||.....+...+.+..... ...+.++... + .|-+.++
T Consensus 6 Ip~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~--------~~~~~v~~~~----~----~g~~~a~ 69 (235)
T cd06434 6 IPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVK--------YGGIFVITVP----H----PGKRRAL 69 (235)
T ss_pred EeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhcc--------CCcEEEEecC----C----CChHHHH
Confidence 4444444 67888888887755567888877666665666533211 1113343221 1 5677777
Q ss_pred HHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHH
Q 009971 194 RQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHR 229 (521)
Q Consensus 194 ~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~ 229 (521)
..++...+ .+.++++.+|..+..+ +.++++.+.
T Consensus 70 n~g~~~a~---~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 70 AEGIRHVT---TDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHHhC---CCEEEEECCCceeChhHHHHHHHhcc
Confidence 77765543 5889999999988877 777777665
No 273
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=83.29 E-value=5.9 Score=37.19 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcEEEEE
Q 009971 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAA 239 (521)
Q Consensus 187 ~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~ 239 (521)
.|-+.++..++.... .+.++++.+|..+..+ +..+++...+.+.++++..
T Consensus 68 ~G~~~a~~~g~~~a~---gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 118 (211)
T cd04188 68 RGKGGAVRAGMLAAR---GDYILFADADLATPFEELEKLEEALKTSGYDIAIGS 118 (211)
T ss_pred CCcHHHHHHHHHHhc---CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 688889888876654 4789999999977755 8888887556666655443
No 274
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=82.07 E-value=26 Score=30.67 Aligned_cols=98 Identities=11% Similarity=0.052 Sum_probs=62.6
Q ss_pred eecCCCcchhHHHHHHhHhCC--CceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHH
Q 009971 115 VPLGANYRLIDIPVSNCLNSN--ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (521)
Q Consensus 115 lpI~G~~pLI~~~l~~l~~~g--i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~a 192 (521)
+|.-+...++..+++.+.+.. ..+|+|+-....+...+.+.+.+. .+.++... . ..|.+.+
T Consensus 3 i~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----------~~~~~~~~---~----~~g~~~a 65 (166)
T cd04186 3 IVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----------EVRLIRNG---E----NLGFGAG 65 (166)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----------CeEEEecC---C----CcChHHH
Confidence 455555568888899987753 457777766555555555554211 13333211 1 2688888
Q ss_pred HHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcC
Q 009971 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETD 232 (521)
Q Consensus 193 l~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~ 232 (521)
+..++.... .+.++++..|..+..+ +..+++.+.+..
T Consensus 66 ~n~~~~~~~---~~~i~~~D~D~~~~~~~l~~~~~~~~~~~ 103 (166)
T cd04186 66 NNQGIREAK---GDYVLLLNPDTVVEPGALLELLDAAEQDP 103 (166)
T ss_pred hhHHHhhCC---CCEEEEECCCcEECccHHHHHHHHHHhCC
Confidence 888876663 5789999999977766 777777655443
No 275
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=81.68 E-value=22 Score=33.72 Aligned_cols=105 Identities=12% Similarity=0.125 Sum_probs=61.7
Q ss_pred eecCCCcchhHHHHHHhHhCCC----ceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChH
Q 009971 115 VPLGANYRLIDIPVSNCLNSNI----SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTA 190 (521)
Q Consensus 115 lpI~G~~pLI~~~l~~l~~~gi----~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~ 190 (521)
+|.-++.+.|...++.+.+... -+|+|+-+...+...+.+..-.. ....+.++... + .|-+
T Consensus 6 ip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~-------~~~~v~~i~~~----~----~~~~ 70 (249)
T cd02525 6 IPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAA-------KDPRIRLIDNP----K----RIQS 70 (249)
T ss_pred EEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHh-------cCCeEEEEeCC----C----CCch
Confidence 4444444577888888876543 36777766555555555544110 01124444211 1 3555
Q ss_pred HHHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcEEE
Q 009971 191 DAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITV 237 (521)
Q Consensus 191 ~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi 237 (521)
.++..++...+ .+.++++.+|.+...+ +.++++.+.+.+.++..
T Consensus 71 ~a~N~g~~~a~---~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~ 115 (249)
T cd02525 71 AGLNIGIRNSR---GDIIIRVDAHAVYPKDYILELVEALKRTGADNVG 115 (249)
T ss_pred HHHHHHHHHhC---CCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEe
Confidence 67777765543 4789999999977666 88888766655555433
No 276
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=80.54 E-value=23 Score=32.00 Aligned_cols=101 Identities=16% Similarity=0.073 Sum_probs=59.3
Q ss_pred chhHHHHHHhHhC----CCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHH
Q 009971 122 RLIDIPVSNCLNS----NISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYL 197 (521)
Q Consensus 122 pLI~~~l~~l~~~----gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~ 197 (521)
..|..+|+.+.+. ...+|+|+-+...+...+.+.. +... ...+.++.... ..|.+.++..++
T Consensus 10 ~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~-~~~~------~~~~~~~~~~~-------n~G~~~a~n~g~ 75 (185)
T cd04179 10 ENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARE-LAAR------VPRVRVIRLSR-------NFGKGAAVRAGF 75 (185)
T ss_pred hhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHH-HHHh------CCCeEEEEccC-------CCCccHHHHHHH
Confidence 3566667777664 3567777765444444444433 1110 01123332221 267788888877
Q ss_pred HHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcEEEEE
Q 009971 198 WLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAA 239 (521)
Q Consensus 198 ~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~ 239 (521)
.... .+.++++.+|.....+ +..++....+.+.++.+..
T Consensus 76 ~~a~---gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 76 KAAR---GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred HHhc---CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 6554 3789999999977666 8888887566666654443
No 277
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=75.00 E-value=75 Score=29.91 Aligned_cols=103 Identities=13% Similarity=0.109 Sum_probs=61.8
Q ss_pred cchhHHHHHHhH-hCCCceEEEEecCC----hHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHHHHH
Q 009971 121 YRLIDIPVSNCL-NSNISKIYVLTQFN----SASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQ 195 (521)
Q Consensus 121 ~pLI~~~l~~l~-~~gi~~I~Iv~~~~----~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~ 195 (521)
.|++-|.+.... +.|.+-=+|++... ..++.+.|++-|. ...+.+.+... -+|-+.|+.+
T Consensus 18 lpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg--------~d~i~l~pR~~-------klGLgtAy~h 82 (238)
T KOG2978|consen 18 LPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYG--------EDNILLKPRTK-------KLGLGTAYIH 82 (238)
T ss_pred CeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhC--------CCcEEEEeccC-------cccchHHHHh
Confidence 355666665554 46665434444322 2456666666442 22344443222 1777788888
Q ss_pred HHHHhhhcCcceEEEEeCCeecc-ccHHHHHHHHHhcCCcEEEEEEe
Q 009971 196 YLWLFEEHNVLEFLVLAGDHLYR-MDYERFIQAHRETDADITVAALP 241 (521)
Q Consensus 196 ~~~~l~~~~~~~~Lvl~gD~l~~-~dl~~ll~~h~~~~aditi~~~~ 241 (521)
++...+ -+.++++.+|.=-. .-+.++++..++.+-|++.....
T Consensus 83 gl~~a~---g~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GTRY 126 (238)
T KOG2978|consen 83 GLKHAT---GDFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGTRY 126 (238)
T ss_pred hhhhcc---CCeEEEEeCccCCCchhHHHHHHHhhccCcceeeeeeE
Confidence 876654 35677888998444 34888998888877787776643
No 278
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=74.78 E-value=41 Score=29.14 Aligned_cols=101 Identities=18% Similarity=0.114 Sum_probs=57.9
Q ss_pred eecCCCcchhHHHHHHhHhCC--CceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHH
Q 009971 115 VPLGANYRLIDIPVSNCLNSN--ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (521)
Q Consensus 115 lpI~G~~pLI~~~l~~l~~~g--i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~a 192 (521)
+|.-.....|..+|+.+.+.. .-+++|+-+...+...+.+.+.... .. ..+.++.... ..|.+.+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~-----~~-~~~~~~~~~~-------~~g~~~~ 69 (180)
T cd06423 3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAAL-----YI-RRVLVVRDKE-------NGGKAGA 69 (180)
T ss_pred ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhcc-----cc-ceEEEEEecc-------cCCchHH
Confidence 455433357888888887764 4567777654444444444431110 00 1122221111 2677788
Q ss_pred HHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhc
Q 009971 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRET 231 (521)
Q Consensus 193 l~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~ 231 (521)
+..++.... .+.++++.+|.+...+ +..++..+.+.
T Consensus 70 ~n~~~~~~~---~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 70 LNAGLRHAK---GDIVVVLDADTILEPDALKRLVVPFFAD 106 (180)
T ss_pred HHHHHHhcC---CCEEEEECCCCCcChHHHHHHHHHhccC
Confidence 888776653 5789999999977766 66664555443
No 279
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=73.06 E-value=74 Score=30.39 Aligned_cols=90 Identities=19% Similarity=0.197 Sum_probs=52.6
Q ss_pred chhHHHHHHhHhCCC----ceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHH
Q 009971 122 RLIDIPVSNCLNSNI----SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYL 197 (521)
Q Consensus 122 pLI~~~l~~l~~~gi----~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~ 197 (521)
..|...|+.+.+... -+++|+.....+...+.+.+ +.. . .+.++... . ..|-+.++..++
T Consensus 42 ~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~-~~~-------~-~v~~i~~~---~----~~g~~~a~n~gi 105 (251)
T cd06439 42 AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIARE-YAD-------K-GVKLLRFP---E----RRGKAAALNRAL 105 (251)
T ss_pred HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHH-Hhh-------C-cEEEEEcC---C----CCChHHHHHHHH
Confidence 345555666554322 25777765444444444443 110 0 13343221 1 157778888777
Q ss_pred HHhhhcCcceEEEEeCCeecccc-HHHHHHHHHh
Q 009971 198 WLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRE 230 (521)
Q Consensus 198 ~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~ 230 (521)
.... .+.++++.+|.+...+ +.++++....
T Consensus 106 ~~a~---~d~i~~lD~D~~~~~~~l~~l~~~~~~ 136 (251)
T cd06439 106 ALAT---GEIVVFTDANALLDPDALRLLVRHFAD 136 (251)
T ss_pred HHcC---CCEEEEEccccCcCHHHHHHHHHHhcC
Confidence 6654 4899999999977766 8888877643
No 280
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=72.12 E-value=49 Score=32.62 Aligned_cols=96 Identities=15% Similarity=0.082 Sum_probs=58.4
Q ss_pred hhHHHHHHhHhCCCceEEEEecCC--hHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHh
Q 009971 123 LIDIPVSNCLNSNISKIYVLTQFN--SASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLF 200 (521)
Q Consensus 123 LI~~~l~~l~~~gi~~I~Iv~~~~--~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l 200 (521)
.|...++.+.+. ..+|+||=+.. .+.+.+.+.+ ...+.++... ++ .|-+.+...++...
T Consensus 9 ~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~~-----------~~~i~~i~~~---~N----~G~a~a~N~Gi~~a 69 (281)
T TIGR01556 9 HLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARLR-----------GQKIALIHLG---DN----QGIAGAQNQGLDAS 69 (281)
T ss_pred HHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhcc-----------CCCeEEEECC---CC----cchHHHHHHHHHHH
Confidence 566777777765 45776665432 2234433332 1225555422 22 78999999888665
Q ss_pred hhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcEEE
Q 009971 201 EEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITV 237 (521)
Q Consensus 201 ~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi 237 (521)
.+...+.++++..|.....+ +..+++...+.+..+.+
T Consensus 70 ~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~ 107 (281)
T TIGR01556 70 FRRGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACA 107 (281)
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEE
Confidence 43346899999999987766 77777776554323333
No 281
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=72.01 E-value=3.9 Score=43.40 Aligned_cols=72 Identities=24% Similarity=0.362 Sum_probs=48.2
Q ss_pred CccEEEEEEeCCCCCCCCccccCCCccceecCCC--cchhHHHHHHhHh----------CCCc-eEEEEec-CChHHHHH
Q 009971 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN--YRLIDIPVSNCLN----------SNIS-KIYVLTQ-FNSASLNR 152 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT~~~PK~LlpI~G~--~pLI~~~l~~l~~----------~gi~-~I~Iv~~-~~~~~i~~ 152 (521)
..+..++++|||.|||++ ...||.++|++.. ..++++..+.+.. .|.+ ..||-+. .-.+...+
T Consensus 95 ~~~~a~~llaGgqgtRLg---~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~ 171 (477)
T KOG2388|consen 95 EGKVAVVLLAGGQGTRLG---SSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLE 171 (477)
T ss_pred cCcceEEEeccCceeeec---cCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHh
Confidence 357899999999999998 5799999999632 1477777666432 1222 2344444 44577788
Q ss_pred HHHHhhhcc
Q 009971 153 HLSRAYASN 161 (521)
Q Consensus 153 ~l~~~~~~~ 161 (521)
|+.....++
T Consensus 172 ~f~~~~~FG 180 (477)
T KOG2388|consen 172 YFESHKYFG 180 (477)
T ss_pred HHhhcCCCC
Confidence 888644444
No 282
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=69.85 E-value=56 Score=29.52 Aligned_cols=97 Identities=11% Similarity=0.048 Sum_probs=56.2
Q ss_pred eecCCCcchhHHHHHHhHhCCCc--eEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHH
Q 009971 115 VPLGANYRLIDIPVSNCLNSNIS--KIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (521)
Q Consensus 115 lpI~G~~pLI~~~l~~l~~~gi~--~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~a 192 (521)
+|.-.....|...|+.+.+.... +|+|+-+...+...+.+.+. .. ..+.+... . ..|.+.+
T Consensus 4 i~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~-~~--------~~~~~~~~----~----~~g~~~a 66 (202)
T cd06433 4 TPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKY-ED--------KITYWISE----P----DKGIYDA 66 (202)
T ss_pred EeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHh-Hh--------hcEEEEec----C----CcCHHHH
Confidence 34432335788888888765544 56666443334445555441 10 11222211 1 1678888
Q ss_pred HHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhc
Q 009971 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRET 231 (521)
Q Consensus 193 l~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~ 231 (521)
+..++...+ .+.++++.+|.....+ +..++....+.
T Consensus 67 ~n~~~~~a~---~~~v~~ld~D~~~~~~~~~~~~~~~~~~ 103 (202)
T cd06433 67 MNKGIALAT---GDIIGFLNSDDTLLPGALLAVVAAFAEH 103 (202)
T ss_pred HHHHHHHcC---CCEEEEeCCCcccCchHHHHHHHHHHhC
Confidence 888876554 4789999999966655 77777544433
No 283
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=68.52 E-value=94 Score=29.70 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcEEEEE
Q 009971 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAA 239 (521)
Q Consensus 187 ~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~ 239 (521)
.|-+.++..++.... .+.++++.+|.....+ +.++++.+.+.+.++.++.
T Consensus 70 ~G~~~a~n~g~~~a~---gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~ 120 (241)
T cd06427 70 RTKPKACNYALAFAR---GEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQ 120 (241)
T ss_pred CchHHHHHHHHHhcC---CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEe
Confidence 577888888876543 4789999999988776 7888887765545654443
No 284
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=66.81 E-value=81 Score=28.93 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=57.3
Q ss_pred ecCCCcchhHHHHHHhHhCCC--ceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHHH
Q 009971 116 PLGANYRLIDIPVSNCLNSNI--SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAV 193 (521)
Q Consensus 116 pI~G~~pLI~~~l~~l~~~gi--~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al 193 (521)
|.-+....|...|+.+.+... .+|+|+-+...+...+.+.+... . .. +.++... .+ .|.+.++
T Consensus 4 ~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~-----~--~~-i~~~~~~---~n----~g~~~~~ 68 (202)
T cd04185 4 VTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGD-----L--DN-IVYLRLP---EN----LGGAGGF 68 (202)
T ss_pred EeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcC-----C--Cc-eEEEECc---cc----cchhhHH
Confidence 333333578888888876432 36766655444555555555210 0 11 3333211 12 6777777
Q ss_pred HHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHH
Q 009971 194 RQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHR 229 (521)
Q Consensus 194 ~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~ 229 (521)
..++........+.++++..|.....+ +..+++...
T Consensus 69 n~~~~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 69 YEGVRRAYELGYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred HHHHHHHhccCCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 776654432235789999999988877 777776655
No 285
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=65.21 E-value=4.8 Score=38.76 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=50.2
Q ss_pred EEEEEEeCCC---CCCCCccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCc
Q 009971 90 VLGIILGGGA---GTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (521)
Q Consensus 90 ~~aVILAaG~---GtRl~PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 166 (521)
|++||+--.. -|||.|.-..-... .+. ..|+..++..+.. ++ |++|+.. +.+.++-..
T Consensus 1 m~~VIPvK~~~~aKSRLs~~L~~~eR~--~La--~aMl~Dvl~al~~--v~-v~vVs~d--~~v~~~a~~---------- 61 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPVLSPEERE--ALA--LAMLRDVLAALRA--VD-VVVVSRD--PEVAALARA---------- 61 (217)
T ss_dssp -EEEEE---TT-TTGGGTTTS-HHHHH--HHH--HHHHHHHHHHHHH---S-EEEEES----S-TTTTT-----------
T ss_pred CeEEEEcCCCCccccccCccCCHHHHH--HHH--HHHHHHHHHHHHh--cC-eEEeccc--hhhhhhhhh----------
Confidence 6788887544 37887631110011 122 3689999999987 66 7777742 222111110
Q ss_pred CCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCe--eccccHHHHHHHH
Q 009971 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAH 228 (521)
Q Consensus 167 ~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h 228 (521)
...++++.... .|--.++.++.... ..+.++++++|+ +...++..++...
T Consensus 62 -~~g~~vl~d~~--------~gLN~Al~~a~~~~---~~~~vlvl~aDLPll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 62 -RLGAEVLPDPG--------RGLNAALNAALAAA---GDDPVLVLPADLPLLTPEDLDALLAAA 113 (217)
T ss_dssp ---SSEEEE-----------S-HHHHHHHHHH-H-----S-EEEE-S--TT--HHHHHHHCT-S
T ss_pred -ccCCeEecCCC--------CCHHHHHHHHHhcc---CCCceEEeecCCccCCHHHHHHHHhcc
Confidence 01145554321 45667777773222 357899999999 5557788888764
No 286
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=63.46 E-value=1.1e+02 Score=32.02 Aligned_cols=104 Identities=18% Similarity=0.220 Sum_probs=58.4
Q ss_pred chhHHHHHHhHhCCC---ceEEEEecCChHHHHHHHHH---hhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHHHHH
Q 009971 122 RLIDIPVSNCLNSNI---SKIYVLTQFNSASLNRHLSR---AYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQ 195 (521)
Q Consensus 122 pLI~~~l~~l~~~gi---~~I~Iv~~~~~~~i~~~l~~---~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~ 195 (521)
..|...|+.+.+... -+|+||-+...+...+.+.+ .++ ....+.++..... ...| .|-..++.+
T Consensus 53 ~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~-------~~~~i~vi~~~~~--~~g~-~Gk~~A~n~ 122 (384)
T TIGR03469 53 DVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYG-------RGDRLTVVSGQPL--PPGW-SGKLWAVSQ 122 (384)
T ss_pred hHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcC-------CCCcEEEecCCCC--CCCC-cchHHHHHH
Confidence 456666777765432 36777765433333333322 111 0112455532221 2233 566678877
Q ss_pred HHHHhhhcC--cceEEEEeCCeecccc-HHHHHHHHHhcCCcE
Q 009971 196 YLWLFEEHN--VLEFLVLAGDHLYRMD-YERFIQAHRETDADI 235 (521)
Q Consensus 196 ~~~~l~~~~--~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~adi 235 (521)
+.....+.. .+.++++.+|.....+ +.++++...+.+.++
T Consensus 123 g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 123 GIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred HHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 776544211 4789999999987766 888888877666554
No 287
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=63.30 E-value=1.1e+02 Score=30.46 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=60.1
Q ss_pred eecCCCc-chhHHHHHHhHhCC---C-ceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCCh
Q 009971 115 VPLGANY-RLIDIPVSNCLNSN---I-SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGT 189 (521)
Q Consensus 115 lpI~G~~-pLI~~~l~~l~~~g---i-~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt 189 (521)
+|.-... ..|...|+.+.+.- . .+|+||-+...+...+.+.+..... ....+.++.... ..|-
T Consensus 4 Ip~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~-----~~~~v~vi~~~~-------n~G~ 71 (299)
T cd02510 4 IIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKK-----YLPKVKVLRLKK-------REGL 71 (299)
T ss_pred EEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhh-----cCCcEEEEEcCC-------CCCH
Confidence 4444333 47777788876532 1 3777776544333333332210000 012255553221 2677
Q ss_pred HHHHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCC
Q 009971 190 ADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDA 233 (521)
Q Consensus 190 ~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a 233 (521)
+.+...++.... .+.++++++|.....+ +..+++...+...
T Consensus 72 ~~a~N~g~~~A~---gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 72 IRARIAGARAAT---GDVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred HHHHHHHHHHcc---CCEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 788777776544 4789999999977766 8888888766544
No 288
>PRK10073 putative glycosyl transferase; Provisional
Probab=62.11 E-value=1.1e+02 Score=31.22 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=57.7
Q ss_pred chhHHHHHHhHhCCCc--eEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHH
Q 009971 122 RLIDIPVSNCLNSNIS--KIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWL 199 (521)
Q Consensus 122 pLI~~~l~~l~~~gi~--~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~ 199 (521)
..|...|+.+.+.... +|+||-....+.-.+.+.+ +.. ....+.++. + ++ .|-+.+...++..
T Consensus 19 ~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~-~~~------~~~~i~vi~--~--~n----~G~~~arN~gl~~ 83 (328)
T PRK10073 19 KDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKH-YAE------NYPHVRLLH--Q--AN----AGVSVARNTGLAV 83 (328)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHH-HHh------hCCCEEEEE--C--CC----CChHHHHHHHHHh
Confidence 5778888888765332 5555543222222222222 110 112255553 2 12 6777777777765
Q ss_pred hhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcEEEE
Q 009971 200 FEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVA 238 (521)
Q Consensus 200 l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~ 238 (521)
.. .+.++++.+|-+...+ +..+++...+.+.++.+.
T Consensus 84 a~---g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~ 120 (328)
T PRK10073 84 AT---GKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQC 120 (328)
T ss_pred CC---CCEEEEECCCCccChhHHHHHHHHHHhCCCCEEEE
Confidence 54 4789999999977666 888888776667776543
No 289
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=61.22 E-value=1e+02 Score=28.55 Aligned_cols=106 Identities=8% Similarity=0.020 Sum_probs=58.0
Q ss_pred eecCCCcchhHHHHHHhHhCCC----ceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChH
Q 009971 115 VPLGANYRLIDIPVSNCLNSNI----SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTA 190 (521)
Q Consensus 115 lpI~G~~pLI~~~l~~l~~~gi----~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~ 190 (521)
+|..+....|...|+.+..... -+|+|+-+...+...+.+...... ....+.++.... ....|-+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~------~~~~v~~~~~~~-----~~~~g~~ 71 (229)
T cd04192 3 IAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAK------PNFQLKILNNSR-----VSISGKK 71 (229)
T ss_pred EEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhC------CCcceEEeeccC-----cccchhH
Confidence 5555444578888888765422 356666543333333444300000 112244443221 0125666
Q ss_pred HHHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCc
Q 009971 191 DAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDAD 234 (521)
Q Consensus 191 ~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad 234 (521)
.++..++.... .+.++++.+|.+...+ +..+++.+.+.+..
T Consensus 72 ~a~n~g~~~~~---~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~ 113 (229)
T cd04192 72 NALTTAIKAAK---GDWIVTTDADCVVPSNWLLTFVAFIQKEQIG 113 (229)
T ss_pred HHHHHHHHHhc---CCEEEEECCCcccCHHHHHHHHHHhhcCCCc
Confidence 67766654433 5789999999988766 78888766554443
No 290
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=60.44 E-value=1.3e+02 Score=27.27 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=56.0
Q ss_pred eecCCCc-chhHHHHHHhHhCCCc--eEEEEecCC-hHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChH
Q 009971 115 VPLGANY-RLIDIPVSNCLNSNIS--KIYVLTQFN-SASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTA 190 (521)
Q Consensus 115 lpI~G~~-pLI~~~l~~l~~~gi~--~I~Iv~~~~-~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~ 190 (521)
+|.-+.. ..|..+|+.+.+.-.. +|+|+-+.. ...+...+.. +.. ....+.++... . ..|.+
T Consensus 7 i~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~-~~~------~~~~~~~~~~~---~----~~g~~ 72 (202)
T cd04184 7 MPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKK-YAA------QDPRIKVVFRE---E----NGGIS 72 (202)
T ss_pred EecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHH-HHh------cCCCEEEEEcc---c----CCCHH
Confidence 3443333 5567777777654332 566664332 2233333332 110 01113333211 1 16777
Q ss_pred HHHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHH-HhcCCc
Q 009971 191 DAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAH-RETDAD 234 (521)
Q Consensus 191 ~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h-~~~~ad 234 (521)
.++..++.... .+.++++..|.....+ +..+++.+ ...+.+
T Consensus 73 ~a~n~g~~~a~---~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~ 115 (202)
T cd04184 73 AATNSALELAT---GEFVALLDHDDELAPHALYEVVKALNEHPDAD 115 (202)
T ss_pred HHHHHHHHhhc---CCEEEEECCCCcCChHHHHHHHHHHHhCCCCC
Confidence 88877776543 4788999999977766 88888877 334444
No 291
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=60.01 E-value=26 Score=28.98 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=9.6
Q ss_pred eeeCCCCEEeeeEECCCCEE
Q 009971 459 IGIGKNSHIKRAIIDKNARI 478 (521)
Q Consensus 459 ~~Ig~~~~i~~~ii~~~~~I 478 (521)
+.|+.++.+++.+-++++.|
T Consensus 37 v~i~~~~~v~G~i~~~~~~i 56 (101)
T PF04519_consen 37 VKIGGNGEVKGDIKADDVII 56 (101)
T ss_pred EEEcCCCEEEEEEEEeEEEE
Confidence 34555555554444444444
No 292
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=59.77 E-value=1.4e+02 Score=27.10 Aligned_cols=104 Identities=14% Similarity=0.133 Sum_probs=59.2
Q ss_pred ceecCCCcchhHHHHHHhHhCCC----ceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCCh
Q 009971 114 AVPLGANYRLIDIPVSNCLNSNI----SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGT 189 (521)
Q Consensus 114 LlpI~G~~pLI~~~l~~l~~~gi----~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt 189 (521)
++|.-.....|..+|+.+.+... -+|+|+.....+...+.+.+ +. .. +.... . .. ..|.
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~-~~--------~~-~~~~~-~--~~----~~gk 64 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARA-AG--------AT-VLERH-D--PE----RRGK 64 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHH-cC--------Ce-EEEeC-C--CC----CCCH
Confidence 34554333577778888866432 35666655444444444433 11 11 11111 1 11 1578
Q ss_pred HHHHHHHHHHhh--hcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcE
Q 009971 190 ADAVRQYLWLFE--EHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADI 235 (521)
Q Consensus 190 ~~al~~~~~~l~--~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~adi 235 (521)
+.++..++.... ....+.++++.+|.....+ +..+++.+.+ +.++
T Consensus 65 ~~aln~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~-~~~~ 112 (183)
T cd06438 65 GYALDFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAA-GARV 112 (183)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhh-CCCe
Confidence 888888876553 1235789999999988877 7777776643 4443
No 293
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=59.36 E-value=14 Score=43.29 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=29.5
Q ss_pred eEEeeeEECCCCEECCCC-EEcceEEECCccccccccccccccCCCcceeeCCCCEEeeeE-ECCCCEECCCcEEe
Q 009971 412 CKIHHSVVGLRSCISEGA-IIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAI-IDKNARIGDNVKIV 485 (521)
Q Consensus 412 ~~I~~s~ig~~~~Ig~~~-~I~~s~i~~~~~~e~~~~~~~~~~~~~~~~~Ig~~~~i~~~i-i~~~~~Ig~~~~i~ 485 (521)
+.|.||+|..+++++++. .|++|.+.++ +.||++|+|.++. .+.+..|.+++.|.
T Consensus 332 ~~v~ns~~~~~~s~~~~s~~vE~s~l~~~-------------------~~ig~~~Iisgv~~~~~~~~vP~~~ci~ 388 (974)
T PRK13412 332 MFVQNAVLSGKLTAENATLWIENSHVGEG-------------------WKLASRSIITGVPENSWNLDLPEGVCID 388 (974)
T ss_pred eEEEeeEecCCcccCCCeEEEEeeEecCC-------------------eEEcCCcEEecccccccceecCCCcEEE
Confidence 345566666666666653 3555555544 4566666665553 33345555555553
No 294
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=58.97 E-value=1.3e+02 Score=27.00 Aligned_cols=47 Identities=13% Similarity=0.018 Sum_probs=33.7
Q ss_pred CChHHHHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcEEE
Q 009971 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITV 237 (521)
Q Consensus 187 ~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi 237 (521)
.|.+.++..++.... .+.++++.+|.....+ +..+++. .+.+.++.+
T Consensus 66 ~G~~~a~n~g~~~a~---~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v~ 113 (181)
T cd04187 66 FGQQAALLAGLDHAR---GDAVITMDADLQDPPELIPEMLAK-WEEGYDVVY 113 (181)
T ss_pred CCcHHHHHHHHHhcC---CCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcEEE
Confidence 688888888876544 4789999999977665 7777776 344555433
No 295
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=58.33 E-value=2.2e+02 Score=29.12 Aligned_cols=137 Identities=9% Similarity=0.132 Sum_probs=72.3
Q ss_pred CChHHHHHHHHHHhhhcCcceEEEEeCCeeccc-cHHHHHHHHHh---cCCcEEEEEEecCcccCcceeEEEeCCCCCeE
Q 009971 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRM-DYERFIQAHRE---TDADITVAALPMDEKRATAFGLMKIDEEGRII 262 (521)
Q Consensus 187 ~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~-dl~~ll~~h~~---~~aditi~~~~~~~~~~~~~g~v~~d~~grV~ 262 (521)
.|.+.++..++..-. .+.++++.+|.-.+. ++..+++...+ .+.++++....... ++..
T Consensus 148 ~G~~~A~~~Gi~~a~---gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~-------------~~~~- 210 (333)
T PTZ00260 148 KGKGGAVRIGMLASR---GKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLV-------------DSDV- 210 (333)
T ss_pred CChHHHHHHHHHHcc---CCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccc-------------cCcc-
Confidence 688899988876543 478999999996664 47777776543 45555444321110 0000
Q ss_pred EeeeCCChhh--hhhcccccccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhcchHhhhhCCceEEE
Q 009971 263 EFSEKPKGEQ--LKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQA 340 (521)
Q Consensus 263 ~i~ekp~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~dil~~li~~~~~I~~ 340 (521)
....+.... ......-.+++. .. .-.-..+|..+|++++++.++.....+...|..+++-.+.+.+.+|.-
T Consensus 211 -~~~~~~~r~~~~~~~~~l~~~~~-~~-----~i~D~~~Gfk~~~r~~~~~i~~~~~~~~~~fd~Ell~~a~~~g~~I~E 283 (333)
T PTZ00260 211 -VAKRKWYRNILMYGFHFIVNTIC-GT-----NLKDTQCGFKLFTRETARIIFPSLHLERWAFDIEIVMIAQKLNLPIAE 283 (333)
T ss_pred -cccCcHHHHHHHHHHHHHHHHHc-CC-----CcccCCCCeEEEeHHHHHHHhhhccccCccchHHHHHHHHHcCCCEEE
Confidence 000000000 000000000000 00 011345788999999988765433333344666777777777777777
Q ss_pred EEecceEEe
Q 009971 341 YLYDGYWED 349 (521)
Q Consensus 341 ~~~~g~w~d 349 (521)
+++. |.+
T Consensus 284 vPv~--~~~ 290 (333)
T PTZ00260 284 VPVN--WTE 290 (333)
T ss_pred Ecee--eEE
Confidence 7664 544
No 296
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=58.31 E-value=1.5e+02 Score=27.03 Aligned_cols=99 Identities=13% Similarity=0.161 Sum_probs=57.5
Q ss_pred ceecCCCc--chhHHHHHHhHhCC--CceEEEEecCC-hHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCC
Q 009971 114 AVPLGANY--RLIDIPVSNCLNSN--ISKIYVLTQFN-SASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQG 188 (521)
Q Consensus 114 LlpI~G~~--pLI~~~l~~l~~~g--i~~I~Iv~~~~-~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~G 188 (521)
++|+..+. ..|...|+.+.+.. -.+++||-... .+...+.+.. +.. ... +.++.... + .|
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~-~~~------~~~-i~~i~~~~---n----~G 67 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEE-FKR------KLP-LKVVPLEK---N----RG 67 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHH-HHh------cCC-eEEEEcCc---c----cc
Confidence 35564221 27888898887753 24666654433 3344443333 111 011 34442211 1 68
Q ss_pred hHHHHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHh
Q 009971 189 TADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRE 230 (521)
Q Consensus 189 t~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~ 230 (521)
.+.+...++.... .+.++++.+|.+...+ +..+++...+
T Consensus 68 ~~~a~N~g~~~a~---gd~i~~lD~Dd~~~~~~l~~~~~~~~~ 107 (201)
T cd04195 68 LGKALNEGLKHCT---YDWVARMDTDDISLPDRFEKQLDFIEK 107 (201)
T ss_pred HHHHHHHHHHhcC---CCEEEEeCCccccCcHHHHHHHHHHHh
Confidence 8888888776543 4789999999977766 7777777644
No 297
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=56.90 E-value=1.3e+02 Score=32.23 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=52.1
Q ss_pred hhHHHHHHhHhCCC--ceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHh
Q 009971 123 LIDIPVSNCLNSNI--SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLF 200 (521)
Q Consensus 123 LI~~~l~~l~~~gi--~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l 200 (521)
.|..+++.+.+..- -+|+|+.....+...+.+.+-.. ....+.++.... ..|-+.++..++...
T Consensus 89 ~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~-------~~~~v~vv~~~~-------n~Gka~AlN~gl~~a 154 (444)
T PRK14583 89 NARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLA-------EDPRLRVIHLAH-------NQGKAIALRMGAAAA 154 (444)
T ss_pred HHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHH-------hCCCEEEEEeCC-------CCCHHHHHHHHHHhC
Confidence 45666666655422 36777655333333333332100 011244443221 167888888877543
Q ss_pred hhcCcceEEEEeCCeecccc-HHHHHHHHHh
Q 009971 201 EEHNVLEFLVLAGDHLYRMD-YERFIQAHRE 230 (521)
Q Consensus 201 ~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~ 230 (521)
. .|.++++.+|.+.+.| +..+++.+.+
T Consensus 155 ~---~d~iv~lDAD~~~~~d~L~~lv~~~~~ 182 (444)
T PRK14583 155 R---SEYLVCIDGDALLDKNAVPYLVAPLIA 182 (444)
T ss_pred C---CCEEEEECCCCCcCHHHHHHHHHHHHh
Confidence 3 5899999999988877 7777776644
No 298
>PRK11204 N-glycosyltransferase; Provisional
Probab=54.79 E-value=1.5e+02 Score=31.04 Aligned_cols=93 Identities=18% Similarity=0.169 Sum_probs=53.4
Q ss_pred chhHHHHHHhHhCCC--ceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHH
Q 009971 122 RLIDIPVSNCLNSNI--SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWL 199 (521)
Q Consensus 122 pLI~~~l~~l~~~gi--~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~ 199 (521)
..|...++.+.+..- -+|+|+-....+...+.+.+-.. ....+.++... ++ .|-++++..++..
T Consensus 67 ~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~-------~~~~v~~i~~~---~n----~Gka~aln~g~~~ 132 (420)
T PRK11204 67 ENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAA-------QIPRLRVIHLA---EN----QGKANALNTGAAA 132 (420)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHH-------hCCcEEEEEcC---CC----CCHHHHHHHHHHH
Confidence 345666666665432 36666655333333333332110 01114444311 11 6788888888765
Q ss_pred hhhcCcceEEEEeCCeecccc-HHHHHHHHHhc
Q 009971 200 FEEHNVLEFLVLAGDHLYRMD-YERFIQAHRET 231 (521)
Q Consensus 200 l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~ 231 (521)
.+ .+.++++.+|.+...| +.++++...+.
T Consensus 133 a~---~d~i~~lDaD~~~~~d~L~~l~~~~~~~ 162 (420)
T PRK11204 133 AR---SEYLVCIDGDALLDPDAAAYMVEHFLHN 162 (420)
T ss_pred cC---CCEEEEECCCCCCChhHHHHHHHHHHhC
Confidence 43 5899999999988777 78888776543
No 299
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=51.28 E-value=2.1e+02 Score=26.76 Aligned_cols=86 Identities=17% Similarity=0.189 Sum_probs=50.2
Q ss_pred chhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhh
Q 009971 122 RLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFE 201 (521)
Q Consensus 122 pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~ 201 (521)
..|...|+.+.+. ..+|+|+=+...+........ ....+.++... .+ .|-+.+...++....
T Consensus 11 ~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~~~----------~~~~i~~i~~~---~n----~G~~~a~N~g~~~a~ 72 (237)
T cd02526 11 SKLKELLAALAEQ-VDKVVVVDNSSGNDIELRLRL----------NSEKIELIHLG---EN----LGIAKALNIGIKAAL 72 (237)
T ss_pred HHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHhhc----------cCCcEEEEECC---Cc----eehHHhhhHHHHHHH
Confidence 5677778887776 566766644322222222111 01124444322 12 677788887776554
Q ss_pred hcCcceEEEEeCCeecccc-HHHHH
Q 009971 202 EHNVLEFLVLAGDHLYRMD-YERFI 225 (521)
Q Consensus 202 ~~~~~~~Lvl~gD~l~~~d-l~~ll 225 (521)
....+.++++.+|...+.+ +..++
T Consensus 73 ~~~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 73 ENGADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred hCCCCEEEEECCCCCcCHhHHHHHH
Confidence 3234799999999987766 66664
No 300
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=49.42 E-value=2.5e+02 Score=29.98 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=32.4
Q ss_pred CChHHHHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhc
Q 009971 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRET 231 (521)
Q Consensus 187 ~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~ 231 (521)
.|-+.++..++.... .+.++++.+|.+.+.| +.++++...+.
T Consensus 117 ~Gka~AlN~gl~~s~---g~~v~~~DaD~~~~~d~L~~l~~~f~~~ 159 (439)
T TIGR03111 117 QGKAKALNAAIYNSI---GKYIIHIDSDGKLHKDAIKNMVTRFENN 159 (439)
T ss_pred CCHHHHHHHHHHHcc---CCEEEEECCCCCcChHHHHHHHHHHHhC
Confidence 678888888876543 4789999999988777 78888777543
No 301
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=48.38 E-value=2.2e+02 Score=26.07 Aligned_cols=35 Identities=9% Similarity=-0.040 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHH
Q 009971 191 DAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAH 228 (521)
Q Consensus 191 ~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h 228 (521)
.++..++... ..+.++++.+|...+.+ +..+++..
T Consensus 76 ~~~n~g~~~a---~~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 76 NNLIKGYEEA---RYDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred HHHHHHHHhC---CCCEEEEECCCceEChhHHHHHHHHh
Confidence 4444454433 35789999999977766 77777654
No 302
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=47.85 E-value=2.3e+02 Score=26.14 Aligned_cols=95 Identities=16% Similarity=0.053 Sum_probs=54.1
Q ss_pred ceecCCCcchhHHHHHHhHhCC--CceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHH
Q 009971 114 AVPLGANYRLIDIPVSNCLNSN--ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD 191 (521)
Q Consensus 114 LlpI~G~~pLI~~~l~~l~~~g--i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~ 191 (521)
++|.-+..+.|...|+.+.+.- ..+|+|+-+...+...+.+.+ . . +.++.. + .|-+.
T Consensus 4 ii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~-~----------~-~~~~~~-----~----~g~~~ 62 (221)
T cd02522 4 IIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS-A----------G-VVVISS-----P----KGRAR 62 (221)
T ss_pred EEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc-C----------C-eEEEeC-----C----cCHHH
Confidence 3455444356778888876642 246666654433444444443 1 1 223221 1 45666
Q ss_pred HHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcC
Q 009971 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETD 232 (521)
Q Consensus 192 al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~ 232 (521)
+...++.... .+.++++..|..+..+ +.+++......+
T Consensus 63 a~n~g~~~a~---~~~i~~~D~D~~~~~~~l~~l~~~~~~~~ 101 (221)
T cd02522 63 QMNAGAAAAR---GDWLLFLHADTRLPPDWDAAIIETLRADG 101 (221)
T ss_pred HHHHHHHhcc---CCEEEEEcCCCCCChhHHHHHHHHhhcCC
Confidence 6666665543 4789999999977766 666655554443
No 303
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=46.18 E-value=2e+02 Score=25.52 Aligned_cols=99 Identities=8% Similarity=0.012 Sum_probs=52.7
Q ss_pred eecCCCcchhHHHHHHhHhCC--CceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHH
Q 009971 115 VPLGANYRLIDIPVSNCLNSN--ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (521)
Q Consensus 115 lpI~G~~pLI~~~l~~l~~~g--i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~a 192 (521)
+|.-.....|..+|+.+.+.- ..+|+|+-....+...+.+.+... ......+.+... +. ..|.+.+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~-----~~~~~~~~~~~~-----~~--~~~~~~~ 70 (182)
T cd06420 3 ITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKS-----QFPIPIKHVWQE-----DE--GFRKAKI 70 (182)
T ss_pred EeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHh-----hcCCceEEEEcC-----Cc--chhHHHH
Confidence 444433356788888887642 346776655444444444443110 001111222211 11 1345556
Q ss_pred HHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHH
Q 009971 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAH 228 (521)
Q Consensus 193 l~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h 228 (521)
+..++.... .+.++++.+|.+...+ +..+++.+
T Consensus 71 ~n~g~~~a~---g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 71 RNKAIAAAK---GDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHhc---CCEEEEEcCCcccCHHHHHHHHHHh
Confidence 666655433 4789999999977766 67776655
No 304
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=45.98 E-value=1.6e+02 Score=30.48 Aligned_cols=38 Identities=8% Similarity=-0.021 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHH
Q 009971 189 TADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHR 229 (521)
Q Consensus 189 t~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~ 229 (521)
-..++.+++.. ...|.++++.+|.....| ++.++....
T Consensus 114 K~~~l~~~~~~---a~ge~i~~~DaD~~~~p~~L~~lv~~~~ 152 (373)
T TIGR03472 114 KVSNLINMLPH---ARHDILVIADSDISVGPDYLRQVVAPLA 152 (373)
T ss_pred HHHHHHHHHHh---ccCCEEEEECCCCCcChhHHHHHHHHhc
Confidence 34455544333 235889999999988877 777776664
No 305
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=45.43 E-value=2.7e+02 Score=28.37 Aligned_cols=46 Identities=13% Similarity=0.079 Sum_probs=34.5
Q ss_pred CChHHHHHHHHHHhhhcCcceEEEEeCCeeccc-cHHHHHHHHHhcCCcEE
Q 009971 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRM-DYERFIQAHRETDADIT 236 (521)
Q Consensus 187 ~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~-dl~~ll~~h~~~~adit 236 (521)
.|-+.++..++.... .+.++++.+|.-.+. ++.++++... .+.|++
T Consensus 76 ~G~~~A~~~G~~~A~---gd~vv~~DaD~q~~p~~i~~l~~~~~-~~~DvV 122 (325)
T PRK10714 76 YGQHSAIMAGFSHVT---GDLIITLDADLQNPPEEIPRLVAKAD-EGYDVV 122 (325)
T ss_pred CCHHHHHHHHHHhCC---CCEEEEECCCCCCCHHHHHHHHHHHH-hhCCEE
Confidence 688889988876543 478999999997765 4888888774 456654
No 306
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=45.29 E-value=3.3e+02 Score=27.24 Aligned_cols=101 Identities=15% Similarity=0.070 Sum_probs=59.2
Q ss_pred chhHHHHHHhHhCCCceEEE--EecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHH
Q 009971 122 RLIDIPVSNCLNSNISKIYV--LTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWL 199 (521)
Q Consensus 122 pLI~~~l~~l~~~gi~~I~I--v~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~ 199 (521)
..+...++.+.+.......+ +-+...+...+.+.... ...+.++... ++ +|-+++...+...
T Consensus 16 ~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~---------~~~v~~i~~~---~N----lG~agg~n~g~~~ 79 (305)
T COG1216 16 EDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARF---------FPNVRLIENG---EN----LGFAGGFNRGIKY 79 (305)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhc---------CCcEEEEEcC---CC----ccchhhhhHHHHH
Confidence 56667777777765433333 34433444455555521 0124454322 23 7777777766544
Q ss_pred hhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcEEEE
Q 009971 200 FEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVA 238 (521)
Q Consensus 200 l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~ 238 (521)
......+.+++++-|+....+ +.++++.+.+.+..+.+.
T Consensus 80 a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~ 119 (305)
T COG1216 80 ALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVG 119 (305)
T ss_pred HhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEee
Confidence 332212269999999887766 999999998876654443
No 307
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=43.85 E-value=2.7e+02 Score=25.85 Aligned_cols=91 Identities=15% Similarity=0.144 Sum_probs=53.3
Q ss_pred hhHHHHHHhHhCCCc----eEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHH
Q 009971 123 LIDIPVSNCLNSNIS----KIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLW 198 (521)
Q Consensus 123 LI~~~l~~l~~~gi~----~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~ 198 (521)
+|...|+.+.+.... +|+|+-+...+...+.+.+ +.. .. .+.++... .+. .+.+.++..++.
T Consensus 16 ~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~-~~~------~~-~~~~~~~~---~~~---~~~~~~~n~~~~ 81 (234)
T cd06421 16 IVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAE-LGV------EY-GYRYLTRP---DNR---HAKAGNLNNALA 81 (234)
T ss_pred HHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHH-hhc------cc-CceEEEeC---CCC---CCcHHHHHHHHH
Confidence 678888888765432 6777765555555555554 111 00 12233211 110 234556666665
Q ss_pred HhhhcCcceEEEEeCCeecccc-HHHHHHHHHh
Q 009971 199 LFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRE 230 (521)
Q Consensus 199 ~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~ 230 (521)
... .+.++++..|.+.+.+ +..+++...+
T Consensus 82 ~a~---~d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 82 HTT---GDFVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred hCC---CCEEEEEccccCcCccHHHHHHHHHhc
Confidence 443 5789999999988777 7777776654
No 308
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=36.96 E-value=1.7e+02 Score=26.27 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=15.8
Q ss_pred EeeeEECCC-CEECCCCEEcceEEECC
Q 009971 414 IHHSVVGLR-SCISEGAIIEDTLLMGA 439 (521)
Q Consensus 414 I~~s~ig~~-~~Ig~~~~I~~s~i~~~ 439 (521)
+...+...+ +.|++..+|+..+..+.
T Consensus 48 ~~G~v~s~~~iiv~~~g~V~gei~a~~ 74 (146)
T COG1664 48 FEGDVHSDGGIVVGESGRVEGEIEAEH 74 (146)
T ss_pred EEEEEEeCCCEEECCccEEEEEEEeCE
Confidence 344445555 77777777776666553
No 309
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=36.61 E-value=3.6e+02 Score=25.20 Aligned_cols=97 Identities=13% Similarity=0.139 Sum_probs=54.7
Q ss_pred eecCCCcc-hhHHHHHHhHhCCC--ceEEEEecCCh-HHH----HHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCC
Q 009971 115 VPLGANYR-LIDIPVSNCLNSNI--SKIYVLTQFNS-ASL----NRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWF 186 (521)
Q Consensus 115 lpI~G~~p-LI~~~l~~l~~~gi--~~I~Iv~~~~~-~~i----~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~ 186 (521)
+|.-...+ +|...++.+.+... -+|+|+-+... ... +++..+ +. ..+.++.... +
T Consensus 4 ip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~-~~---------~~i~~i~~~~---~---- 66 (236)
T cd06435 4 VPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQ-LG---------ERFRFFHVEP---L---- 66 (236)
T ss_pred EeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHH-hC---------CcEEEEEcCC---C----
Confidence 55543322 78888888887643 36666654332 222 233322 11 1133332211 1
Q ss_pred CC-hHHHHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHH
Q 009971 187 QG-TADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHR 229 (521)
Q Consensus 187 ~G-t~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~ 229 (521)
.| .++++..++..... ..+.++++..|.....+ +..++....
T Consensus 67 ~G~~~~a~n~g~~~a~~-~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 67 PGAKAGALNYALERTAP-DAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred CCCchHHHHHHHHhcCC-CCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 34 36777777765431 14789999999987777 888887664
No 310
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=35.33 E-value=3.5e+02 Score=24.72 Aligned_cols=91 Identities=18% Similarity=0.230 Sum_probs=54.2
Q ss_pred hhHHHHHHhHhCC---CceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHH--HHHHHH
Q 009971 123 LIDIPVSNCLNSN---ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD--AVRQYL 197 (521)
Q Consensus 123 LI~~~l~~l~~~g---i~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~--al~~~~ 197 (521)
-++.+++.+.+.| +.++|.-. +....+.+.+.+ .++-.+. + .|..| -.-.++
T Consensus 42 d~~~i~~~ls~~G~i~~~R~Y~~a-~a~~~l~~~l~~-----------~Gf~pv~---~--------kG~~Dv~laIDam 98 (160)
T TIGR00288 42 DLDEIREILSEYGDIKIGKVLLNQ-YASDKLIEAVVN-----------QGFEPII---V--------AGDVDVRMAVEAM 98 (160)
T ss_pred CHHHHHHHHHhcCCeEEEEEEech-hccHHHHHHHHH-----------CCceEEE---e--------cCcccHHHHHHHH
Confidence 3788888888888 45555432 334455555544 1222221 1 22212 122344
Q ss_pred HHhhhcCcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEE
Q 009971 198 WLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAAL 240 (521)
Q Consensus 198 ~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~ 240 (521)
+.+-....+.|+++.|| .|+..+++..++.+..+..+..
T Consensus 99 e~~~~~~iD~~vLvSgD----~DF~~Lv~~lre~G~~V~v~g~ 137 (160)
T TIGR00288 99 ELIYNPNIDAVALVTRD----ADFLPVINKAKENGKETIVIGA 137 (160)
T ss_pred HHhccCCCCEEEEEecc----HhHHHHHHHHHHCCCEEEEEeC
Confidence 44422346899999999 6899999999999877666553
No 311
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=35.20 E-value=1.3e+02 Score=28.09 Aligned_cols=106 Identities=20% Similarity=0.223 Sum_probs=50.7
Q ss_pred ceecCCCcchhHHHHHHhHhCC--CceEEEEecCChHHHH---HHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCC
Q 009971 114 AVPLGANYRLIDIPVSNCLNSN--ISKIYVLTQFNSASLN---RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQG 188 (521)
Q Consensus 114 LlpI~G~~pLI~~~l~~l~~~g--i~~I~Iv~~~~~~~i~---~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~G 188 (521)
++|..+..+.|...|+.+.... --+|+|+.+...+... +.+...++ ...+.++.... +.. ..+
T Consensus 6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~--------~~~v~vi~~~~---~~g-~~~ 73 (228)
T PF13641_consen 6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYP--------RVRVRVIRRPR---NPG-PGG 73 (228)
T ss_dssp E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTG--------G-GEEEEE-------HH-HHH
T ss_pred EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcC--------CCceEEeecCC---CCC-cch
Confidence 3455444467777788877532 2466666654433322 22222222 11245543221 100 013
Q ss_pred hHHHHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCc
Q 009971 189 TADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDAD 234 (521)
Q Consensus 189 t~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad 234 (521)
.+.++..++...+ .+.++++..|.+...+ +..+++.+...+..
T Consensus 74 k~~a~n~~~~~~~---~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~ 117 (228)
T PF13641_consen 74 KARALNEALAAAR---GDYILFLDDDTVLDPDWLERLLAAFADPGVG 117 (228)
T ss_dssp HHHHHHHHHHH------SEEEEE-SSEEE-CHHHHHHHHHHHBSS--
T ss_pred HHHHHHHHHHhcC---CCEEEEECCCcEECHHHHHHHHHHHHhCCCC
Confidence 4566666666554 5899999999988777 77888877334333
No 312
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=35.07 E-value=3.5e+02 Score=24.56 Aligned_cols=100 Identities=9% Similarity=0.071 Sum_probs=52.8
Q ss_pred eecCCCcchhHHHHHHhHhCCC--ceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHH
Q 009971 115 VPLGANYRLIDIPVSNCLNSNI--SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (521)
Q Consensus 115 lpI~G~~pLI~~~l~~l~~~gi--~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~a 192 (521)
+|.-+....|...|+.+.+... -+|+|+-....+...+.+.+- .. ..+ ..+.++... . ..|.+.+
T Consensus 4 Ip~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~-~~----~~~-~~~~~~~~~---~----~~G~~~~ 70 (214)
T cd04196 4 MATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEY-ID----KDP-FIIILIRNG---K----NLGVARN 70 (214)
T ss_pred EEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHH-Hh----cCC-ceEEEEeCC---C----CccHHHH
Confidence 4554333467888888776432 256666443223323333321 00 000 112222111 1 1577777
Q ss_pred HHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHh
Q 009971 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRE 230 (521)
Q Consensus 193 l~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~ 230 (521)
+..++...+ .+.++++..|..+..+ +..+++...+
T Consensus 71 ~n~g~~~~~---g~~v~~ld~Dd~~~~~~l~~~~~~~~~ 106 (214)
T cd04196 71 FESLLQAAD---GDYVFFCDQDDIWLPDKLERLLKAFLK 106 (214)
T ss_pred HHHHHHhCC---CCEEEEECCCcccChhHHHHHHHHHhc
Confidence 777754433 5789999999877666 8888877333
No 313
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=34.47 E-value=4e+02 Score=25.12 Aligned_cols=86 Identities=15% Similarity=0.142 Sum_probs=52.1
Q ss_pred chhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhh
Q 009971 122 RLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFE 201 (521)
Q Consensus 122 pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~ 201 (521)
..|...|+.+... ..+|+|+-+...+...+.+.+ +. +.++.. +..|-+.+...++....
T Consensus 13 ~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~~~-~~-----------~~v~~~--------~~~g~~~~~n~~~~~a~ 71 (229)
T cd02511 13 RNIERCLESVKWA-VDEIIVVDSGSTDRTVEIAKE-YG-----------AKVYQR--------WWDGFGAQRNFALELAT 71 (229)
T ss_pred HHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHHHH-cC-----------CEEEEC--------CCCChHHHHHHHHHhCC
Confidence 4677777777654 368888766444444444432 21 233321 12677777777766544
Q ss_pred hcCcceEEEEeCCeecccc-HHHHHHHHHhc
Q 009971 202 EHNVLEFLVLAGDHLYRMD-YERFIQAHRET 231 (521)
Q Consensus 202 ~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~ 231 (521)
.+.++++.+|.+...+ +..+++...+.
T Consensus 72 ---~d~vl~lDaD~~~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 72 ---NDWVLSLDADERLTPELADEILALLATD 99 (229)
T ss_pred ---CCEEEEEeCCcCcCHHHHHHHHHHHhCC
Confidence 4799999999987766 55555554433
No 314
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=31.61 E-value=5e+02 Score=26.21 Aligned_cols=50 Identities=10% Similarity=0.068 Sum_probs=35.2
Q ss_pred CChHHHHHHHHHHhhhcCcceEEEEeCCee-cccc-HHHHHHHHH-hcCCcEEEEE
Q 009971 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHL-YRMD-YERFIQAHR-ETDADITVAA 239 (521)
Q Consensus 187 ~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l-~~~d-l~~ll~~h~-~~~aditi~~ 239 (521)
.|-+.++..++.... .+.++++.+|.. .+.+ +.++++... ..+.+++...
T Consensus 101 ~Gkg~A~~~g~~~a~---gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~ 153 (306)
T PRK13915 101 PGKGEALWRSLAATT---GDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAF 153 (306)
T ss_pred CCHHHHHHHHHHhcC---CCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEE
Confidence 688888888765443 478999999996 6654 888888765 3455555544
No 315
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=31.44 E-value=4.2e+02 Score=24.48 Aligned_cols=44 Identities=14% Similarity=-0.013 Sum_probs=30.2
Q ss_pred CChHHHHHHHHHHhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCC
Q 009971 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDA 233 (521)
Q Consensus 187 ~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a 233 (521)
.|-+.+...++.... .+.++++.+|.+...+ +..++....+...
T Consensus 70 ~G~~~a~N~g~~~a~---gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~ 114 (219)
T cd06913 70 KGVGYAKNQAIAQSS---GRYLCFLDSDDVMMPQRIRLQYEAALQHPN 114 (219)
T ss_pred ccHHHHHHHHHHhcC---CCEEEEECCCccCChhHHHHHHHHHHhCCC
Confidence 577777766654433 4789999999977655 7777776655443
No 316
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=29.85 E-value=1.4e+02 Score=31.35 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=42.7
Q ss_pred HHHHhHhCC-CceEEEEecCCh--HHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHhhhc
Q 009971 127 PVSNCLNSN-ISKIYVLTQFNS--ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH 203 (521)
Q Consensus 127 ~l~~l~~~g-i~~I~Iv~~~~~--~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l~~~ 203 (521)
++..|.+.+ ++-++++|+.+. +....++.. +. ..+.+...++-...|+-. .-|+..+...-..+++
T Consensus 22 li~~~~~~~~~~~~vi~TGQH~d~em~~~~le~-~~----i~~pdy~L~i~~~~~tl~-----~~t~~~i~~~~~vl~~- 90 (383)
T COG0381 22 LVKALEKDPDFELIVIHTGQHRDYEMLDQVLEL-FG----IRKPDYDLNIMKPGQTLG-----EITGNIIEGLSKVLEE- 90 (383)
T ss_pred HHHHHHhCCCCceEEEEecccccHHHHHHHHHH-hC----CCCCCcchhccccCCCHH-----HHHHHHHHHHHHHHHh-
Confidence 455667665 999999998666 555555554 22 122233333322222110 1133333333344443
Q ss_pred CcceEEEEeCCeecc
Q 009971 204 NVLEFLVLAGDHLYR 218 (521)
Q Consensus 204 ~~~~~Lvl~gD~l~~ 218 (521)
...|.+++.||+-..
T Consensus 91 ~kPD~VlVhGDT~t~ 105 (383)
T COG0381 91 EKPDLVLVHGDTNTT 105 (383)
T ss_pred hCCCEEEEeCCcchH
Confidence 346799999998554
No 317
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=29.79 E-value=74 Score=27.39 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.4
Q ss_pred chhHHHHHHhHhCCCceEEEEe
Q 009971 122 RLIDIPVSNCLNSNISKIYVLT 143 (521)
Q Consensus 122 pLI~~~l~~l~~~gi~~I~Iv~ 143 (521)
|-|+..++.|.+.|+++|+|+=
T Consensus 46 P~l~~~l~~l~~~g~~~v~vvP 67 (126)
T PRK00923 46 PTIPEALKKLIGTGADKIIVVP 67 (126)
T ss_pred CCHHHHHHHHHHcCCCEEEEEc
Confidence 8999999999999999988863
No 318
>PRK10018 putative glycosyl transferase; Provisional
Probab=27.51 E-value=6.2e+02 Score=25.13 Aligned_cols=90 Identities=11% Similarity=0.181 Sum_probs=52.3
Q ss_pred chhHHHHHHhHhCCCc--eEEEEecCCh--HHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHH
Q 009971 122 RLIDIPVSNCLNSNIS--KIYVLTQFNS--ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYL 197 (521)
Q Consensus 122 pLI~~~l~~l~~~gi~--~I~Iv~~~~~--~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~ 197 (521)
..|...|+.+.+.-.. +|+|+-.-.. +.+.+++.+ + .+..+.++.... ..|.+.+...++
T Consensus 18 ~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~-~--------~~~ri~~i~~~~-------n~G~~~a~N~gi 81 (279)
T PRK10018 18 QLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTA-L--------NDPRITYIHNDI-------NSGACAVRNQAI 81 (279)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHH-c--------CCCCEEEEECCC-------CCCHHHHHHHHH
Confidence 4567778777654433 5555543222 234444443 1 112244443221 268888877777
Q ss_pred HHhhhcCcceEEEEeCCeecccc-HHHHHHHHHh
Q 009971 198 WLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRE 230 (521)
Q Consensus 198 ~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~ 230 (521)
.... .+.++++.+|-+...+ +..+++...+
T Consensus 82 ~~a~---g~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 82 MLAQ---GEYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred HHcC---CCEEEEECCCCCCCccHHHHHHHHHHh
Confidence 6544 4789999999977666 7777776544
No 319
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=26.12 E-value=4.6e+02 Score=27.28 Aligned_cols=210 Identities=12% Similarity=0.057 Sum_probs=107.3
Q ss_pred hhHHHHHHhHhCCCc--eEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHHHh
Q 009971 123 LIDIPVSNCLNSNIS--KIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLF 200 (521)
Q Consensus 123 LI~~~l~~l~~~gi~--~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~~l 200 (521)
.++.+++.+.+.... +|+++.....+...+.+.+.... .. ..+.++.. +....|.+.++..++...
T Consensus 69 ~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~-----~~-~~~~~~~~------~~~~~gK~~al~~~l~~~ 136 (439)
T COG1215 69 VLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAE-----YG-PNFRVIYP------EKKNGGKAGALNNGLKRA 136 (439)
T ss_pred hHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhh-----cC-cceEEEec------cccCccchHHHHHHHhhc
Confidence 788999999887643 77777765666666666653211 00 11233211 011267788888887655
Q ss_pred hhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcEEEEEEecCcccCcceeEEEeCCCCCeEEeeeCCChhhhhhcccc
Q 009971 201 EEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVD 279 (521)
Q Consensus 201 ~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~~d~~grV~~i~ekp~~~~~~~~~~~ 279 (521)
+ .+-++++.+|+....| +.+++......... .+...+...... +. .+--+++..+............
T Consensus 137 ~---~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~-~v~~~~~~~~~~--~~---~~~l~~~~~~~~~~~~~~~~~~--- 204 (439)
T COG1215 137 K---GDVVVILDADTVPEPDALRELVSPFEDPPVG-AVVGTPRIRNRP--DP---SNLLGRIQAIEYLSAFYFRLRA--- 204 (439)
T ss_pred C---CCEEEEEcCCCCCChhHHHHHHhhhcCCCee-EEeCCceeeecC--Ch---hhhcchhcchhhhhhHHHhhhh---
Confidence 4 5789999999988877 88888777544332 122211100000 00 0000122222111110000000
Q ss_pred cccccCCchhhccCCceeeEEEEEEeHHHHHHHHhhhCCCCCChhhc--chHhhhhCCceEEEEEecceE-EecCCHHHH
Q 009971 280 TTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSE--VIPGATSIGMRVQAYLYDGYW-EDIGTIEAF 356 (521)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~GIyifs~~vl~~ll~~~~~~~~d~~~d--il~~li~~~~~I~~~~~~g~w-~dIgt~edy 356 (521)
...............+++++.+.+.-.. . .....+| +--.+...|.++...+-.-.| ....|..++
T Consensus 205 --------~~~~g~~~~~~G~~~~~rr~aL~~~g~~--~-~~~i~ED~~lt~~l~~~G~~~~~~~~~~~~~~~p~t~~~~ 273 (439)
T COG1215 205 --------ASKGGLISFLSGSSSAFRRSALEEVGGW--L-EDTITEDADLTLRLHLRGYRVVYVPEAIVWTEAPETLKEL 273 (439)
T ss_pred --------hhhcCCeEEEcceeeeEEHHHHHHhCCC--C-CCceeccHHHHHHHHHCCCeEEEeecceEeeeCcccHHHH
Confidence 0000013467788899999988755311 1 1111111 112333457777666554334 445677788
Q ss_pred HHHhhhcccCC
Q 009971 357 YNANLGITKKP 367 (521)
Q Consensus 357 ~~An~~ll~~~ 367 (521)
+.-...+.+..
T Consensus 274 ~~Qr~RW~~g~ 284 (439)
T COG1215 274 WRQRLRWARGG 284 (439)
T ss_pred HHHHHHHHccc
Confidence 77777776554
No 320
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=23.86 E-value=9.4e+02 Score=28.30 Aligned_cols=96 Identities=9% Similarity=0.104 Sum_probs=55.9
Q ss_pred hhHHHHHHhHhCCC--c--eEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCChHHHHHHHHH
Q 009971 123 LIDIPVSNCLNSNI--S--KIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLW 198 (521)
Q Consensus 123 LI~~~l~~l~~~gi--~--~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt~~al~~~~~ 198 (521)
++...+..+.+..- + +|+|+-.-..+...+..++ . + +.++... ++ ..|-++++..++.
T Consensus 275 vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~-~--------~---v~yI~R~---~n---~~gKAGnLN~aL~ 336 (852)
T PRK11498 275 VVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQE-V--------G---VKYIARP---TH---EHAKAGNINNALK 336 (852)
T ss_pred HHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHH-C--------C---cEEEEeC---CC---CcchHHHHHHHHH
Confidence 56666766654321 2 5666655445666655554 1 1 3333211 11 1456788888876
Q ss_pred HhhhcCcceEEEEeCCeecccc-HHHHHHHHHhcCCcEEEEEE
Q 009971 199 LFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAAL 240 (521)
Q Consensus 199 ~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~~ 240 (521)
..+ .|.++++.+|++...| ++.++..+.+. .++.++..
T Consensus 337 ~a~---GEyIavlDAD~ip~pdfL~~~V~~f~~d-P~VglVQt 375 (852)
T PRK11498 337 YAK---GEFVAIFDCDHVPTRSFLQMTMGWFLKD-KKLAMMQT 375 (852)
T ss_pred hCC---CCEEEEECCCCCCChHHHHHHHHHHHhC-CCeEEEEc
Confidence 544 4899999999988777 66666665443 34444443
No 321
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=23.35 E-value=5.1e+02 Score=24.83 Aligned_cols=113 Identities=13% Similarity=0.093 Sum_probs=67.3
Q ss_pred ccceec--CCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCCcEEEeecccCCCCCCCCCCh
Q 009971 112 KPAVPL--GANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGT 189 (521)
Q Consensus 112 K~LlpI--~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~vl~~~q~~~~~~~~~Gt 189 (521)
-+++|| +|- +|.+=+++.+-.+-+-.|-+.-.+..-+...|+.+- ........+-++.+ -+-|
T Consensus 72 i~~V~ILRAGl-~m~~gl~~~~P~a~vG~ig~~Rdeet~~p~~yy~KL-----P~~~~~~~viv~DP---------MLAT 136 (210)
T COG0035 72 IVIVPILRAGL-GMVEGLLKLIPSARVGHIGIYRDEETLEPVLYYEKL-----PEDIDERTVIVLDP---------MLAT 136 (210)
T ss_pred EEEEEEeeccc-cHHHHHHHhCCcceEEEEEEEecCccCceehhHHhC-----CCcccCCeEEEECc---------hhhc
Confidence 566777 465 899999998888767777776665554455555541 11122333433322 1678
Q ss_pred HHHHHHHHHHhhhc-CcceEEEEeCCeeccccHHHHHHHHHhcCCcEEEEEEecCc
Q 009971 190 ADAVRQYLWLFEEH-NVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDE 244 (521)
Q Consensus 190 ~~al~~~~~~l~~~-~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~ 244 (521)
++++..+.+.+.+. ..+.+.++. =.-.+.-++.+.+.| .++.+++...++
T Consensus 137 G~s~i~ai~~L~~~G~~~~I~~v~-~vAapeGi~~v~~~~----p~v~I~ta~iD~ 187 (210)
T COG0035 137 GGSAIAAIDLLKKRGGPKNIKVVS-LVAAPEGIKAVEKAH----PDVEIYTAAIDE 187 (210)
T ss_pred cHhHHHHHHHHHHhCCCceEEEEE-EEecHHHHHHHHHhC----CCCeEEEEEecc
Confidence 89999999888876 444443331 111234477766655 566676665543
No 322
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=22.28 E-value=7e+02 Score=24.29 Aligned_cols=122 Identities=13% Similarity=0.140 Sum_probs=62.1
Q ss_pred cEEEEEEeCCCCCCCCc---cccCC--CccceecCCCcchhHHHHHHhHhCCCceEEEEecCCh---HHHHHHHHHhhhc
Q 009971 89 SVLGIILGGGAGTRLYP---LTKKR--AKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS---ASLNRHLSRAYAS 160 (521)
Q Consensus 89 ~~~aVILAaG~GtRl~P---lT~~~--PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~---~~i~~~l~~~~~~ 160 (521)
.+.+|+.+.-.|+=... +...+ .++-+|+- .-..-+++.|...|+++|.|++.|.. +.+.+|+.+.
T Consensus 71 ~~dvi~~~cTsgs~~~G~~~~~~~i~~~~~g~p~t---t~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~--- 144 (239)
T TIGR02990 71 ELDVVAYSCTSASVVIGDDEVTRAINAAKPGTPVV---TPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVR--- 144 (239)
T ss_pred CCCEEEEccchhheecCHHHHHHHHHhcCCCCCee---CHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhC---
Confidence 45677777655543221 11111 12234443 24566788999999999999998775 3555666541
Q ss_pred cCCCCcCCCcEEEeecccCC--CCCCCCCChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHH
Q 009971 161 NMGGYKNEGFVEVLAAQQSP--ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQ 226 (521)
Q Consensus 161 ~~~~~~~~~~v~vl~~~q~~--~~~~~~~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~ 226 (521)
+ ++++...... .+.+...=+.+.+.++...+.. .+-+-+++.|-.+-..++-+-++
T Consensus 145 --------G-~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~-~~aDAifisCTnLrt~~vi~~lE 202 (239)
T TIGR02990 145 --------G-FEIVNFTCLGLTDDREMARISPDCIVEAALAAFD-PDADALFLSCTALRAATCAQRIE 202 (239)
T ss_pred --------C-cEEeeeeccCCCCCceeeecCHHHHHHHHHHhcC-CCCCEEEEeCCCchhHHHHHHHH
Confidence 1 2332221100 1100001234566655544432 34566677777776666444343
No 323
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=21.89 E-value=5.9e+02 Score=25.97 Aligned_cols=119 Identities=17% Similarity=0.168 Sum_probs=66.6
Q ss_pred EEEeCCCCCCCC---ccccCCCccceecCCCcchhHHHHHHhHhCCCceEEEEecCChHHHHHHHHHhhhccCCCCcCCC
Q 009971 93 IILGGGAGTRLY---PLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (521)
Q Consensus 93 VILAaG~GtRl~---PlT~~~PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 169 (521)
-.-|||+|--.. -.-...++++-+++| ..=++..+.|.+.|+..-++-+...-. .
T Consensus 32 ~~~aGGKGINVa~vL~~lG~~~~a~GflGg--~tg~~~~~~l~~~gi~~~fv~v~g~TR--------------------i 89 (310)
T COG1105 32 TKTAGGKGINVARVLKDLGIPVTALGFLGG--FTGEFFVALLKDEGIPDAFVEVKGDTR--------------------I 89 (310)
T ss_pred eecCCCCceeHHHHHHHcCCCceEEEecCC--ccHHHHHHHHHhcCCCceEEEccCCCe--------------------e
Confidence 455778884321 111246778888864 567888888888888776666532211 1
Q ss_pred cEEEeecc---cCC-CCCCCCCChHHHHHHHHHHhhh-cCcceEEEEeCCe---eccccHHHHHHHHHhcCCc
Q 009971 170 FVEVLAAQ---QSP-ENPNWFQGTADAVRQYLWLFEE-HNVLEFLVLAGDH---LYRMDYERFIQAHRETDAD 234 (521)
Q Consensus 170 ~v~vl~~~---q~~-~~~~~~~Gt~~al~~~~~~l~~-~~~~~~Lvl~gD~---l~~~dl~~ll~~h~~~~ad 234 (521)
.+.++... ++. ..+. +.=+-.-+.+.+..++. ...++++++.|-. +-...|.++++..++.+.-
T Consensus 90 nvki~~~~~~~~Tein~~G-p~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~ 161 (310)
T COG1105 90 NVKILDEEDGEETEINFPG-PEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAK 161 (310)
T ss_pred eEEEEecCCCcEEEecCCC-CCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCe
Confidence 12333221 100 0000 01133445555555544 2467889999987 3334499999988877654
No 324
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=20.84 E-value=1.6e+02 Score=30.46 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=43.6
Q ss_pred CccEEEEEEeCCCCCCCCccc-------c---CC-----CccceecCCCcchhHHHHHHhHhCCCceEEEEec-----CC
Q 009971 87 SRSVLGIILGGGAGTRLYPLT-------K---KR-----AKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQ-----FN 146 (521)
Q Consensus 87 ~~~~~aVILAaG~GtRl~PlT-------~---~~-----PK~LlpI~G~~pLI~~~l~~l~~~gi~~I~Iv~~-----~~ 146 (521)
+++|.++||.| .|||..--. . .. --+++.+. . |-|...++.|...|.++|+|+-- .|
T Consensus 3 ~~~~~aiLLvg-HGSRdp~~~~~~~~La~~l~~~~~~~V~~aFLE~~-e-Psl~eal~~l~~~G~~~IvVvPlFL~~G~H 79 (335)
T PRK05782 3 RQSNTAIILIG-HGSRRETFNSDMEGMANYLKEKLGVPIYLTYNEFA-E-PNWRSLLNEIIKEGYRRVIIALAFLGRGNH 79 (335)
T ss_pred CCCCceEEEEe-cCCCChHHHHHHHHHHHHHHhccCCceEEEEeccC-C-CCHHHHHHHHHHCCCCEEEEecccccCCcc
Confidence 45678888887 888852110 0 11 23466665 4 99999999999999999888743 22
Q ss_pred -hHHHHHHHHH
Q 009971 147 -SASLNRHLSR 156 (521)
Q Consensus 147 -~~~i~~~l~~ 156 (521)
...|-+.+..
T Consensus 80 v~~DIP~~L~~ 90 (335)
T PRK05782 80 VFRDIMGELGV 90 (335)
T ss_pred hhhhHHHHHHH
Confidence 2455555553
No 325
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=20.80 E-value=4.7e+02 Score=21.32 Aligned_cols=17 Identities=6% Similarity=0.104 Sum_probs=9.8
Q ss_pred CCEECCCCEEcceEEEC
Q 009971 422 RSCISEGAIIEDTLLMG 438 (521)
Q Consensus 422 ~~~Ig~~~~I~~s~i~~ 438 (521)
...|+.++.|...+...
T Consensus 36 ~v~i~~~~~v~G~i~~~ 52 (101)
T PF04519_consen 36 KVKIGGNGEVKGDIKAD 52 (101)
T ss_pred EEEEcCCCEEEEEEEEe
Confidence 55666666666555444
No 326
>PRK10063 putative glycosyl transferase; Provisional
Probab=20.66 E-value=7.7e+02 Score=23.78 Aligned_cols=42 Identities=17% Similarity=0.239 Sum_probs=28.7
Q ss_pred CChHHHHHHHHHHhhhcCcceEEEEeCCeeccccHHHHHHHHHhc
Q 009971 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRET 231 (521)
Q Consensus 187 ~Gt~~al~~~~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~ 231 (521)
.|-++++..++.... .+.++++++|-++..+..+++......
T Consensus 68 ~G~~~A~N~Gi~~a~---g~~v~~ld~DD~~~~~~~~~~~~~~~~ 109 (248)
T PRK10063 68 NGIYDAMNKGIAMAQ---GRFALFLNSGDIFHQDAANFVRQLKMQ 109 (248)
T ss_pred CCHHHHHHHHHHHcC---CCEEEEEeCCcccCcCHHHHHHHHHhC
Confidence 688889888886654 478889998776665644455544333
Done!