Your job contains 1 sequence.
>009973
MAEADQGFVEHDGNHDLEQIPENQEVENQVPGYEVPEYEVPEVPQEQVPQEQVPESQVTK
EQVTEDQLTEDQVPEDHVPEDQVPEDHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTE
KKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMIS
AKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQ
GGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVD
RSIIPLFEMHMQMPNPQMDHIPPPQSWGPPQGLPPSGGPGYGHNPQYMPPPRQAESYYPP
ADLPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTA
GASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAAPSQAQM
GASADQGYNPYASMYGSPPSNPGHAGHAGGYGSVYGSNYGY
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009973
(521 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
WARNING: hspmax=1000 was exceeded by 2 of the database sequences, causing the
associated cutoff score, S2, to be transiently set as high as 37.
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2084908 - symbol:FLK "AT3G04610" species:3702 ... 1420 3.8e-150 3
TAIR|locus:2120755 - symbol:PEP "AT4G26000" species:3702 ... 762 1.3e-75 1
TAIR|locus:2017612 - symbol:AT1G51580 "AT1G51580" species... 235 6.6e-28 3
TAIR|locus:2150956 - symbol:AT5G15270 "AT5G15270" species... 281 4.1e-26 3
TAIR|locus:2831364 - symbol:AT4G18375 "AT4G18375" species... 209 3.9e-21 2
UNIPROTKB|F1SFQ4 - symbol:PCBP2 "Uncharacterized protein"... 253 3.9e-20 1
UNIPROTKB|Q3SYT9 - symbol:PCBP2 "Poly(RC) binding protein... 251 5.2e-20 1
UNIPROTKB|J3QT27 - symbol:PCBP3 "Poly(rC)-binding protein... 193 1.2e-19 2
TAIR|locus:2161413 - symbol:AT5G46190 "AT5G46190" species... 184 2.4e-19 2
UNIPROTKB|E2QUE1 - symbol:PCBP3 "Uncharacterized protein"... 193 3.9e-19 2
MGI|MGI:1890470 - symbol:Pcbp3 "poly(rC) binding protein ... 193 3.9e-19 2
UNIPROTKB|D4A1P3 - symbol:Pcbp3 "Protein Pcbp3" species:1... 193 3.9e-19 2
UNIPROTKB|P57721 - symbol:PCBP3 "Poly(rC)-binding protein... 193 3.9e-19 2
UNIPROTKB|Q17QV0 - symbol:PCBP3 "Uncharacterized protein"... 193 4.1e-19 2
UNIPROTKB|E9PFP8 - symbol:PCBP3 "Poly(rC)-binding protein... 193 4.1e-19 2
UNIPROTKB|Q5E9A3 - symbol:PCBP1 "Poly(rC)-binding protein... 186 7.8e-19 2
UNIPROTKB|J9P7Y9 - symbol:PCBP1 "Uncharacterized protein"... 186 7.8e-19 2
UNIPROTKB|Q15365 - symbol:PCBP1 "Poly(rC)-binding protein... 186 7.8e-19 2
UNIPROTKB|I3LEC2 - symbol:PCBP1 "Uncharacterized protein"... 186 7.8e-19 2
MGI|MGI:1345635 - symbol:Pcbp1 "poly(rC) binding protein ... 186 7.8e-19 2
RGD|1561319 - symbol:Pcbp1 "poly(rC) binding protein 1" s... 186 7.8e-19 2
RGD|1307430 - symbol:Pcbp3 "poly(rC) binding protein 3" s... 193 1.5e-18 2
UNIPROTKB|C9J0A4 - symbol:PCBP4 "Poly(rC)-binding protein... 174 1.7e-18 2
TAIR|locus:2035807 - symbol:AT1G14170 "AT1G14170" species... 233 2.4e-18 2
UNIPROTKB|G3V0E8 - symbol:PCBP2 "Poly(RC) binding protein... 186 2.7e-18 2
UNIPROTKB|Q0VCU0 - symbol:PCBP4 "Poly(rC)-binding protein... 174 3.0e-18 2
UNIPROTKB|B4DXP5 - symbol:PCBP2 "Poly(rC)-binding protein... 186 3.1e-18 2
ZFIN|ZDB-GENE-050522-157 - symbol:pcbp3 "poly(rC) binding... 190 3.2e-18 2
UNIPROTKB|E2RCH9 - symbol:PCBP3 "Uncharacterized protein"... 193 5.3e-18 2
MGI|MGI:1890471 - symbol:Pcbp4 "poly(rC) binding protein ... 174 6.1e-18 2
RGD|1307910 - symbol:Pcbp4 "poly(rC) binding protein 4" s... 174 6.1e-18 2
UNIPROTKB|E2RG64 - symbol:PCBP4 "Uncharacterized protein"... 174 9.9e-18 2
UNIPROTKB|P57723 - symbol:PCBP4 "Poly(rC)-binding protein... 174 9.9e-18 2
RGD|621345 - symbol:Nova1 "neuro-oncological ventral anti... 213 1.1e-17 2
UNIPROTKB|F1LMZ7 - symbol:Nova1 "RNA-binding protein Nova... 213 1.1e-17 2
UNIPROTKB|D3DS81 - symbol:NOVA1 "Neuro-oncological ventra... 213 1.3e-17 2
UNIPROTKB|J9P8W8 - symbol:PCBP2 "Uncharacterized protein"... 177 2.2e-17 2
UNIPROTKB|Q15366 - symbol:PCBP2 "Poly(rC)-binding protein... 234 2.3e-17 1
RGD|1309626 - symbol:Pcbp2 "poly(rC) binding protein 2" s... 234 2.3e-17 1
ZFIN|ZDB-GENE-070424-78 - symbol:zgc:162999 "zgc:162999" ... 182 2.4e-17 2
UNIPROTKB|F8VZX2 - symbol:PCBP2 "Poly(rC)-binding protein... 186 5.3e-17 2
ZFIN|ZDB-GENE-030131-563 - symbol:pcbp2 "poly(rC) binding... 189 6.6e-17 2
MGI|MGI:108202 - symbol:Pcbp2 "poly(rC) binding protein 2... 230 6.8e-17 1
UNIPROTKB|E2RCF9 - symbol:PCBP2 "Uncharacterized protein"... 186 6.9e-17 2
UNIPROTKB|F1NPL2 - symbol:PCBP3 "Uncharacterized protein"... 183 1.2e-16 2
UNIPROTKB|F1NPL4 - symbol:PCBP3 "Uncharacterized protein"... 183 1.4e-16 2
UNIPROTKB|I3LRN5 - symbol:PCBP4 "Uncharacterized protein"... 174 1.8e-16 2
UNIPROTKB|F1NPL3 - symbol:PCBP3 "Uncharacterized protein"... 183 2.2e-16 2
UNIPROTKB|G3X7R5 - symbol:NOVA1 "Uncharacterized protein"... 134 3.1e-16 3
UNIPROTKB|J9NXS6 - symbol:NOVA1 "Uncharacterized protein"... 134 3.1e-16 3
UNIPROTKB|F1RM28 - symbol:NOVA2 "Uncharacterized protein"... 209 3.5e-16 2
MGI|MGI:104297 - symbol:Nova1 "neuro-oncological ventral ... 133 4.0e-16 3
UNIPROTKB|D4AAF8 - symbol:Nova1 "RNA-binding protein Nova... 133 4.0e-16 3
UNIPROTKB|H3BRU6 - symbol:PCBP2 "Poly(rC)-binding protein... 176 5.5e-16 2
TAIR|locus:2066020 - symbol:AT2G22600 "AT2G22600" species... 184 1.0e-15 2
ZFIN|ZDB-GENE-040426-2122 - symbol:zgc:65870 "zgc:65870" ... 178 1.6e-15 2
FB|FBgn0261552 - symbol:ps "pasilla" species:7227 "Drosop... 176 1.6e-15 2
UNIPROTKB|P51513 - symbol:NOVA1 "RNA-binding protein Nova... 128 1.9e-15 3
ZFIN|ZDB-GENE-030131-4357 - symbol:khsrp "KH-type splicin... 174 2.3e-15 2
RGD|1308032 - symbol:Nova2 "neuro-oncological ventral ant... 200 2.9e-15 2
MGI|MGI:1196294 - symbol:Fubp1 "far upstream element (FUS... 176 1.4e-14 2
RGD|1591892 - symbol:Fubp1 "far upstream element (FUSE) b... 176 1.7e-14 2
UNIPROTKB|Q32PX7 - symbol:Fubp1 "Far upstream element-bin... 176 1.7e-14 2
UNIPROTKB|J9P014 - symbol:FUBP1 "Uncharacterized protein"... 176 1.7e-14 2
UNIPROTKB|Q96AE4 - symbol:FUBP1 "Far upstream element-bin... 176 1.7e-14 2
UNIPROTKB|F1S9S5 - symbol:FUBP1 "Uncharacterized protein"... 176 1.7e-14 2
UNIPROTKB|E9PEB5 - symbol:FUBP1 "Far upstream element-bin... 176 1.8e-14 2
UNIPROTKB|B4DT31 - symbol:FUBP1 "cDNA FLJ53425, highly si... 176 1.9e-14 2
UNIPROTKB|E2RJQ2 - symbol:FUBP1 "Uncharacterized protein"... 176 1.9e-14 2
FB|FBgn0262737 - symbol:mub "mushroom-body expressed" spe... 168 2.0e-14 2
ZFIN|ZDB-GENE-060526-113 - symbol:nova1 "neuro-oncologica... 190 2.1e-14 2
UNIPROTKB|F1S9S9 - symbol:FUBP1 "Uncharacterized protein"... 176 2.3e-14 2
ASPGD|ASPL0000075803 - symbol:AN4546 species:162425 "Emer... 154 3.1e-14 2
UNIPROTKB|F1NP95 - symbol:NOVA1 "Uncharacterized protein"... 206 3.8e-14 1
ZFIN|ZDB-GENE-041121-12 - symbol:zgc:101598 "zgc:101598" ... 161 4.0e-14 2
UNIPROTKB|Q9UNW9 - symbol:NOVA2 "RNA-binding protein Nova... 189 4.3e-14 2
POMBASE|SPCC757.09c - symbol:rnc1 "RNA-binding protein th... 145 6.7e-14 2
UNIPROTKB|F6Y140 - symbol:KHSRP "Uncharacterized protein"... 165 7.2e-14 2
UNIPROTKB|F1S0X8 - symbol:FUBP3 "Uncharacterized protein"... 165 8.5e-14 2
UNIPROTKB|H9L011 - symbol:LOC426023 "Uncharacterized prot... 186 8.8e-14 1
ASPGD|ASPL0000045500 - symbol:AN10257 species:162425 "Eme... 143 9.7e-14 2
UNIPROTKB|F1PUD6 - symbol:NOVA2 "Uncharacterized protein"... 186 1.0e-13 2
UNIPROTKB|E1BVU6 - symbol:LOC100858906 "Uncharacterized p... 148 1.0e-13 2
MGI|MGI:1336214 - symbol:Khsrp "KH-type splicing regulato... 165 1.1e-13 2
UNIPROTKB|F8W0G4 - symbol:PCBP2 "Poly(rC)-binding protein... 185 1.1e-13 1
UNIPROTKB|F1MHR6 - symbol:LOC505564 "Uncharacterized prot... 165 1.2e-13 2
UNIPROTKB|Q92945 - symbol:KHSRP "Far upstream element-bin... 165 1.2e-13 2
UNIPROTKB|E2QVT3 - symbol:KHSRP "Uncharacterized protein"... 165 1.3e-13 2
UNIPROTKB|F1SBT6 - symbol:KHSRP "Uncharacterized protein"... 165 1.4e-13 2
CGD|CAL0000592 - symbol:orf19.5627 species:5476 "Candida ... 146 1.6e-13 2
UNIPROTKB|F1MS84 - symbol:NOVA2 "Uncharacterized protein"... 183 1.6e-13 2
UNIPROTKB|E1BX03 - symbol:FUBP1 "Uncharacterized protein"... 168 2.2e-13 2
RGD|1307004 - symbol:Fubp3 "far upstream element (FUSE) b... 164 2.5e-13 2
UNIPROTKB|G3V829 - symbol:Fubp3 "RCG45587" species:10116 ... 164 2.5e-13 2
UNIPROTKB|F1NV59 - symbol:FUBP1 "Uncharacterized protein"... 176 2.8e-13 2
RGD|621828 - symbol:Khsrp "KH-type splicing regulatory pr... 165 3.2e-13 2
UNIPROTKB|F1NYJ3 - symbol:FUBP3 "Uncharacterized protein"... 166 3.4e-13 2
UNIPROTKB|F1NGC0 - symbol:FUBP3 "Uncharacterized protein"... 166 4.2e-13 2
ZFIN|ZDB-GENE-040426-1926 - symbol:hnrnpk "heterogeneous ... 125 4.4e-13 2
UNIPROTKB|F1MX51 - symbol:FUBP1 "Uncharacterized protein"... 160 8.6e-13 2
WARNING: Descriptions of 129 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2084908 [details] [associations]
symbol:FLK "AT3G04610" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0009911
"positive regulation of flower development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 EMBL:CP002686 GO:GO:0003723
GO:GO:0009911 EMBL:AC011437 KO:K13162 HSSP:Q9UNW9 EMBL:AY070475
IPI:IPI00521688 RefSeq:NP_187112.1 UniGene:At.28392
ProteinModelPortal:Q9SR13 SMR:Q9SR13 STRING:Q9SR13 PRIDE:Q9SR13
ProMEX:Q9SR13 EnsemblPlants:AT3G04610.1 GeneID:819619
KEGG:ath:AT3G04610 TAIR:At3g04610 InParanoid:Q9SR13 OMA:LEPQQYE
PhylomeDB:Q9SR13 ProtClustDB:CLSN2914698 Genevestigator:Q9SR13
Uniprot:Q9SR13
Length = 577
Score = 1420 (504.9 bits), Expect = 3.8e-150, Sum P(3) = 3.8e-150
Identities = 302/442 (68%), Positives = 342/442 (77%)
Query: 75 EDHVPEDQVPEDHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESVFRM 134
+DH D+V +D V ED E+ +PE + +K E E + VG EK+WPGWPGE+VFRM
Sbjct: 138 QDH-NGDEV-QDKV-ED---EEGIPEHLESLQKSEPEEDATVGGEEKRWPGWPGETVFRM 191
Query: 135 LVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMD 194
LVPAQKVGSIIGRKG+ IKKIVEETRARIKILDGPPGTTERAVM+S KEEPESSLPP+MD
Sbjct: 192 LVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKEEPESSLPPSMD 251
Query: 195 GLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCI 254
GLLRVH RIVDGLD ++S AP + KVST+LLVPASQAGSLIGKQGGTVK+IQEAS CI
Sbjct: 252 GLLRVHMRIVDGLDGEASQAPPPS--KVSTRLLVPASQAGSLIGKQGGTVKAIQEASACI 309
Query: 255 VRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVDRSIIPLFEMHMQMP 314
VRVLG+EDLPVFALQDDRVVEVVG+ + VH+A+ELI SHLRKFLVDRSIIP FE MQ P
Sbjct: 310 VRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHLRKFLVDRSIIPFFENQMQKP 369
Query: 315 NPQMDHIXXXXXXXX--XXXXXXXXXXXXXHNPQ-YMPPPRQAESYYPPADL-PPPMEKQ 370
QMDH+ HNP YM PP + +SYYPP ++ PPMEKQ
Sbjct: 370 TRQMDHMPPPHQSWGPPQGHAPSVGGGGYGHNPPPYMQPPPRHDSYYPPPEMRQPPMEKQ 429
Query: 371 PHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRS 430
PHQGISAYGRE P+NVH SS + P + QVTQQMQIPLSYADAVIGT+G++ISY RR
Sbjct: 430 PHQGISAYGREPPMNVHVSS---APPMVAQQVTQQMQIPLSYADAVIGTSGSNISYTRRL 486
Query: 431 SGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAAPS--QAQMGASADQGY 488
SGATVTIQETRGVPGEMTVE+SGT SQVQTA QLIQNFMAEA AP+ Q Q A QGY
Sbjct: 487 SGATVTIQETRGVPGEMTVEVSGTGSQVQTAVQLIQNFMAEAGAPAPAQPQTVAPEQQGY 546
Query: 489 NPYA---SMYGSPPSNP--GHA 505
NPYA S+Y + P+NP G+A
Sbjct: 547 NPYATHGSVYAAAPTNPPGGYA 568
Score = 44 (20.5 bits), Expect = 3.8e-150, Sum P(3) = 3.8e-150
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 1 MAEAD--QGFVEHDGNHDLEQIPE--NQEVEN 28
MAEA+ Q FV H+G +Q+P+ + E+ N
Sbjct: 1 MAEAEDQQNFVAHNG----DQVPDQGSDELHN 28
Score = 38 (18.4 bits), Expect = 3.8e-150, Sum P(3) = 3.8e-150
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 65 EDQLTEDQ---VPEDHV-PED-QVPEDHV-PED-QVPEDIVPEDSQLQEKQENE 111
ED + E Q VP+ + P+ +VP+ + P+ +V + + QLQ+ Q NE
Sbjct: 47 EDPILEPQQYEVPDPTLEPQQYEVPDQTLEPQQYEVDDQLEYHQYQLQD-QANE 99
Score = 38 (18.4 bits), Expect = 4.1e-147, Sum P(2) = 4.1e-147
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 3 EADQGFVEHDGNHDLEQIPENQE 25
+A++ +H + DL+ P+NQE
Sbjct: 96 QANEDVQDHSQD-DLQYQPQNQE 117
>TAIR|locus:2120755 [details] [associations]
symbol:PEP "AT4G26000" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0048367 "shoot system development" evidence=IMP]
[GO:0048467 "gynoecium development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
EMBL:AL049483 GO:GO:0003723 GO:GO:0048367 GO:GO:0048467 HSSP:Q96AE4
KO:K13162 EMBL:AY056288 EMBL:AY099659 EMBL:AY114064 IPI:IPI00547245
PIR:T04255 RefSeq:NP_194330.1 UniGene:At.23137 UniGene:At.66652
ProteinModelPortal:Q9SZH4 SMR:Q9SZH4 IntAct:Q9SZH4 STRING:Q9SZH4
PaxDb:Q9SZH4 PRIDE:Q9SZH4 EnsemblPlants:AT4G26000.1 GeneID:828706
KEGG:ath:AT4G26000 TAIR:At4g26000 eggNOG:NOG314569
HOGENOM:HOG000243588 InParanoid:Q9SZH4 OMA:MCEETRA PhylomeDB:Q9SZH4
ProtClustDB:CLSN2685896 Genevestigator:Q9SZH4 Uniprot:Q9SZH4
Length = 495
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 170/376 (45%), Positives = 229/376 (60%)
Query: 118 STEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAV 177
S E++WPGWPG+ VFRM+VP KVG+IIGRKG+FIKK+ EETRARIK+LDGP T +R V
Sbjct: 62 SAEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIV 121
Query: 178 MISAKEEPESSLPPAMDGLLRVHKRIVDGL-DSDSSHAPSGTGGKVSTKLLVPASQAGSL 236
+IS KEEPE+ + PAMD +LRV +R V GL D+D + S +LLV ++QA +L
Sbjct: 122 LISGKEEPEAYMSPAMDAVLRVFRR-VSGLPDNDDDDVQNAGSVFSSVRLLVASTQAINL 180
Query: 237 IGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
IGKQG +KSI E S VR+L E+ P +A QD+R+V++ G+A + KA+E I HLR+
Sbjct: 181 IGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAIVGHLRR 240
Query: 297 FLVDRSIIPLFEMHMQMPNPQMDHIXXXXXXXXXXXXXXXXXXXXXHNPQYMPPPRQAES 356
FLVD +++PLFE Q P + R+ E
Sbjct: 241 FLVDHTVVPLFEKQYLARVSQ----TRQEEPLAESKSSLHTISSNLMEPDFSLLARR-EP 295
Query: 357 YYPPADLPPPMEKQPHQGISAYGREAPVNV-HGSSNAQSTPSMITQVTQQMQIPLSYADA 415
+ D QP G+S Y ++ ++ H A+ + + +TQV+Q MQIP SYA+
Sbjct: 296 LFLERDSRVDSRVQP-SGVSIYSQDPVLSARHSPGLARVSSAFVTQVSQTMQIPFSYAED 354
Query: 416 VIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAAP 475
+IG GA+I+YIRR SGAT+TI+E+ P ++TVEI GT SQVQTA+QLIQ F+ P
Sbjct: 355 IIGVEGANIAYIRRRSGATITIKESPH-PDQITVEIKGTTSQVQTAEQLIQEFIINHKEP 413
Query: 476 SQAQMG-ASADQGYNP 490
G A D GY P
Sbjct: 414 VSVSGGYARIDSGYVP 429
>TAIR|locus:2017612 [details] [associations]
symbol:AT1G51580 "AT1G51580" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC025294
EMBL:AC024261 GO:GO:0003723 UniGene:At.37784 eggNOG:NOG285495
UniGene:At.66909 KO:K13162 EMBL:BT008776 EMBL:AK227874
IPI:IPI00539866 PIR:D96554 RefSeq:NP_175569.1
ProteinModelPortal:Q9C553 SMR:Q9C553 IntAct:Q9C553 PaxDb:Q9C553
PRIDE:Q9C553 EnsemblPlants:AT1G51580.1 GeneID:841583
KEGG:ath:AT1G51580 TAIR:At1g51580 HOGENOM:HOG000077702
InParanoid:Q9C553 OMA:PGFDRPP PhylomeDB:Q9C553
ProtClustDB:CLSN2679414 Genevestigator:Q9C553 Uniprot:Q9C553
Length = 621
Score = 235 (87.8 bits), Expect = 6.6e-28, Sum P(3) = 6.6e-28
Identities = 59/169 (34%), Positives = 91/169 (53%)
Query: 129 ESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESS 188
E FR+L PA KVGS+IG+ G ++ + E+ A IK+ D + ER ++ISA+E E
Sbjct: 275 EVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLERR 334
Query: 189 LPPAMDGLLRVHKRIVD-GLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSI 247
A DG++RVH RIV+ G + PS V +LLV + G L+GK G + +
Sbjct: 335 HSLAQDGVMRVHNRIVEIGFE------PSAA---VVARLLVHSPYIGRLLGKGGHLISEM 385
Query: 248 QEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
+ A+ +RV + + Q D +V+V+G+ V A+ I LR+
Sbjct: 386 RRATGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLRE 434
Score = 133 (51.9 bits), Expect = 6.6e-28, Sum P(3) = 6.6e-28
Identities = 42/134 (31%), Positives = 64/134 (47%)
Query: 343 HNPQYMPPPRQAESYYPPADLPP-PMEKQPHQGISAY-GREAPVNV-HGSS--NAQ--ST 395
H P + PP P D PP PM P GI + G P +V HG + N S
Sbjct: 489 HGPGFDRPPG------PGFDRPPSPMSWTPQPGIDGHPGGMVPPDVNHGFALRNEPIGSE 542
Query: 396 PSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTA 455
++T ++ IP +Y V G ++++YI++ SGA V + + + E V +SGT+
Sbjct: 543 NPVMTSANVEIVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDPKAGTTEGLVVVSGTS 602
Query: 456 SQVQTAQQLIQNFM 469
Q AQ L+ F+
Sbjct: 603 DQAHFAQSLLHAFI 616
Score = 121 (47.7 bits), Expect = 7.5e-20, Sum P(3) = 7.5e-20
Identities = 38/117 (32%), Positives = 60/117 (51%)
Query: 183 EEPESSLPPAMDGLLRVHKRIVDGLDS---DSSHAPSGTGGKVSTKLLVPASQAGSLIGK 239
EE SS A LLRV +RIV G D+ D G + +++V +Q L+ K
Sbjct: 110 EEAPSS---AQMALLRVFERIVFGDDAATVDGDELDKGESEGLC-RMIVRGNQVDYLMSK 165
Query: 240 QGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
G ++ I+E S IVR+ + +P A D V+++ G S V KA+ L+ + L++
Sbjct: 166 GGKMIQKIREDSGAIVRISSTDQIPPCAFPGDVVIQMNGKFSSVKKALLLVTNCLQE 222
Score = 106 (42.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 32/100 (32%), Positives = 46/100 (46%)
Query: 414 DAVIGTAGASISYIRRSSGATVTIQETRGVP-----GEMTVEISGTASQVQTAQQLIQNF 468
D ++ G I IR SGA V I T +P G++ ++++G S V+ A L+ N
Sbjct: 160 DYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGDVVIQMNGKFSSVKKALLLVTNC 219
Query: 469 MAEAAAPSQAQMGASADQGYNP-YASM-----YGSPPSNP 502
+ E+ AP GY P Y SM + PP NP
Sbjct: 220 LQESGAPPTWDECPFPQPGYPPEYHSMEYHPQWDHPPPNP 259
Score = 105 (42.0 bits), Expect = 7.5e-20, Sum P(3) = 7.5e-20
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 129 ESV-FRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDG-PPGTTERAVMI---SAKE 183
ESV FR+L PA + G+IIG+ G I+ + T ++I+++D P + ER V+I S K+
Sbjct: 17 ESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLIIAPSGKK 76
Query: 184 EPESSL 189
+ ES++
Sbjct: 77 KDESNV 82
Score = 92 (37.4 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 214 APSGTGGK-VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDR 272
A + T + V +LL PA++ G++IGK G ++ +Q + +RV+ +D+PV + ++R
Sbjct: 10 ATTATAAESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVI--DDIPVPS--EER 65
Query: 273 VVEVVGDASGVHK 285
VV ++ SG K
Sbjct: 66 VVLIIAP-SGKKK 77
Score = 63 (27.2 bits), Expect = 9.6e-14, Sum P(4) = 9.6e-14
Identities = 25/103 (24%), Positives = 43/103 (41%)
Query: 402 VTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI----QETR-GVPGEMTVEISGTAS 456
V ++ + Y ++G G IS +RR++GA++ + Q T+ + V++ G
Sbjct: 360 VVARLLVHSPYIGRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIGNLK 419
Query: 457 QVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPP 499
VQ A I + EA P + P+ Y PP
Sbjct: 420 TVQDALFQILCRLREAMFPGRLPFQGMGGPP-PPFMGPYPEPP 461
Score = 63 (27.2 bits), Expect = 1.4e-12, Sum P(3) = 1.4e-12
Identities = 27/106 (25%), Positives = 43/106 (40%)
Query: 350 PPRQAESYYPPADLPPP---MEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQM 406
PP E +P PP ME P Q P +V G N P + +V ++
Sbjct: 226 PPTWDECPFPQPGYPPEYHSMEYHP-QWDHPPPNPMPEDV-GPFNR---PVVEEEVAFRL 280
Query: 407 QIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEIS 452
P ++IG GA + ++ SGA++ + + E + IS
Sbjct: 281 LCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVIS 326
Score = 57 (25.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 129 ESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKI 165
E + RM+V +V ++ + G+ I+KI E++ A ++I
Sbjct: 147 EGLCRMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRI 183
Score = 56 (24.8 bits), Expect = 6.6e-28, Sum P(3) = 6.6e-28
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 74 PEDHVPEDQVPEDHVPEDQVPEDIVPEDSQLQEKQ 108
PE H E DH P + +PED+ P + + E++
Sbjct: 241 PEYHSMEYHPQWDHPPPNPMPEDVGPFNRPVVEEE 275
Score = 49 (22.3 bits), Expect = 9.6e-14, Sum P(4) = 9.6e-14
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 345 PQYMPPPRQAESYYPPADLPPP 366
P Y PP + Y+P D PPP
Sbjct: 237 PGY-PPEYHSMEYHPQWDHPPP 257
>TAIR|locus:2150956 [details] [associations]
symbol:AT5G15270 "AT5G15270" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003723 eggNOG:NOG315872 KO:K13162
EMBL:AK228673 EMBL:AK229313 IPI:IPI00527841 RefSeq:NP_197031.3
RefSeq:NP_851040.1 UniGene:At.31826 ProteinModelPortal:Q0WNX3
SMR:Q0WNX3 PaxDb:Q0WNX3 PRIDE:Q0WNX3 EnsemblPlants:AT5G15270.1
EnsemblPlants:AT5G15270.2 GeneID:831379 KEGG:ath:AT5G15270
TAIR:At5g15270 HOGENOM:HOG000240086 InParanoid:Q0WNX3 OMA:IYSPSDE
PhylomeDB:Q0WNX3 ProtClustDB:CLSN2679973 Genevestigator:Q0WNX3
Uniprot:Q0WNX3
Length = 548
Score = 281 (104.0 bits), Expect = 4.1e-26, Sum P(3) = 4.1e-26
Identities = 62/175 (35%), Positives = 105/175 (60%)
Query: 129 ESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMI-SAKEEP-- 185
++VFR L P +K+GS+IGR G+ +K++ +TR++I+I + PG ER + I S +E
Sbjct: 49 DTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNA 108
Query: 186 ----ESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQG 241
E L PA D L R+H R+V D+ S +P G +V+ KLLVP+ Q G ++G+ G
Sbjct: 109 FGDGEKVLSPAQDALFRIHDRVVAD-DARSEDSPEGEK-QVTAKLLVPSDQIGCILGRGG 166
Query: 242 GTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
V++I+ + +R++ ++P+ AL D ++++ G+ V KA+ I S L +
Sbjct: 167 QIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHE 221
Score = 233 (87.1 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 52/173 (30%), Positives = 94/173 (54%)
Query: 129 ESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESS 188
E R++ P + + S+IG+ G I ++ +ETRA IK+ + + ISA+E E +
Sbjct: 283 EFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDA 342
Query: 189 LPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQ 248
P ++ ++R+ + D ++ DS +T+LLVP+S+ G ++GK G + ++
Sbjct: 343 YSPTIEAVMRLQPKCSDKVERDSGLV------SFTTRLLVPSSRIGCILGKGGAIITEMR 396
Query: 249 EASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVDR 301
+ +R+LG E+LP A DD +V++ G+ +A+ I S LR + DR
Sbjct: 397 RMTKANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVFDR 449
Score = 61 (26.5 bits), Expect = 4.1e-26, Sum P(3) = 4.1e-26
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 397 SMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVP-----GEMTVEI 451
S + T ++ +P S ++G GA I+ +RR + A + I +P + V+I
Sbjct: 365 SGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQI 424
Query: 452 SGTASQVQTAQQLIQ 466
SG + A LIQ
Sbjct: 425 SGELDVAKEA--LIQ 437
Score = 61 (26.5 bits), Expect = 4.1e-26, Sum P(3) = 4.1e-26
Identities = 18/78 (23%), Positives = 35/78 (44%)
Query: 375 ISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGAT 434
+ +YGR+A T+ ++ P+ +VIG GA I+ +R+ + AT
Sbjct: 257 MGSYGRDAGDWSRPLYQPPRNDPPATEFFIRLVSPVENIASVIGKGGALINQLRQETRAT 316
Query: 435 VTIQETRGVPGEMTVEIS 452
+ + +R + + IS
Sbjct: 317 IKVDSSRTEGNDCLITIS 334
Score = 50 (22.7 bits), Expect = 4.1e-26, Sum P(3) = 4.1e-26
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 481 GASADQGYNPYASMYGSPPSNP-G-HAGHA 508
G SA+ GY+PY + G S P G + G+A
Sbjct: 497 GVSAE-GYSPYGAPVGGSSSTPYGVYGGYA 525
>TAIR|locus:2831364 [details] [associations]
symbol:AT4G18375 "AT4G18375" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161548 EMBL:AL021710
KO:K13162 EMBL:AY133701 EMBL:BT001108 IPI:IPI00539414
IPI:IPI00548636 RefSeq:NP_193572.1 RefSeq:NP_849406.1
UniGene:At.32914 ProteinModelPortal:P58223 SMR:P58223
MEROPS:S01.441 PaxDb:P58223 EnsemblPlants:AT4G18375.2 GeneID:827566
KEGG:ath:AT4G18375 GeneFarm:2264 TAIR:At4g18375 eggNOG:NOG297635
HOGENOM:HOG000084632 InParanoid:P58223 OMA:ANICISK PhylomeDB:P58223
ProtClustDB:CLSN2686050 Genevestigator:P58223 GermOnline:AT4G18375
Uniprot:P58223
Length = 606
Score = 209 (78.6 bits), Expect = 3.9e-21, Sum P(2) = 3.9e-21
Identities = 62/198 (31%), Positives = 100/198 (50%)
Query: 131 VFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMI--SAKEEPE-- 186
V+R+L P VG +IG+ G+ I I T+A+IK+ D G ++R + I S KE+ E
Sbjct: 37 VYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEEI 96
Query: 187 ----SSLPP---AMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGK 239
S P A D LL+V+ IV + +++ +LLVP SQ+ SLIGK
Sbjct: 97 GFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNKECRLLVPFSQSSSLIGK 156
Query: 240 QGGTVKSIQEASNCIVRVLG---AEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
G +K I+ + V+V+ ++ V A++ D VV + G+ V +A+ + + + K
Sbjct: 157 AGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIMYK 216
Query: 297 FLVDRSIIPLFEMHMQMP 314
+ R IPL +P
Sbjct: 217 -INPRENIPLDSTSQDVP 233
Score = 118 (46.6 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 37/137 (27%), Positives = 70/137 (51%)
Query: 129 ESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPP--GTTERAVMISAKEEPE 186
E VF++L P + +IG+ G IK+I E + + I++ D G E ++++A E P+
Sbjct: 311 ELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPD 370
Query: 187 SSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKS 246
A++ +L + + I D D+++ V +LLV + G +IGK G +
Sbjct: 371 DMKSMAVEAVLLLQEYINDE-DAEN----------VKMQLLVSSKVIGCVIGKSGSVINE 419
Query: 247 IQEASNCIVRVL-GAED 262
I++ +N + + G +D
Sbjct: 420 IRKRTNANICISKGKKD 436
Score = 114 (45.2 bits), Expect = 3.9e-21, Sum P(2) = 3.9e-21
Identities = 30/97 (30%), Positives = 48/97 (49%)
Query: 374 GISAYGR-EAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSG 432
G YG A NV GS+ S + + ++ IP V+G G ++ IRR SG
Sbjct: 507 GFHGYGSFPAGDNVLGSTGPYSYGRLPSSSALEILIPAHAMSKVMGKGGGNLENIRRISG 566
Query: 433 ATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFM 469
A + I ++ G+ +SGT Q++ A+ L+Q F+
Sbjct: 567 AMIEISASKTSHGDHIALLSGTLEQMRCAENLVQAFV 603
Score = 72 (30.4 bits), Expect = 9.4e-17, Sum P(2) = 9.4e-17
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 402 VTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTA 461
V Q+ + VIG +G+ I+ IR+ + A + I ++G ++ VE+SG S V+ A
Sbjct: 395 VKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICI--SKGKKDDL-VEVSGEVSSVRDA 451
Query: 462 QQLIQ 466
LIQ
Sbjct: 452 --LIQ 454
Score = 72 (30.4 bits), Expect = 9.4e-17, Sum P(2) = 9.4e-17
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 375 ISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGAT 434
+ + PV HG + + ++ +V PL VIG G++I IR +SG+
Sbjct: 290 VPVFASSLPVT-HGFGGSSRSEELVFKVL----CPLCNIMRVIGKGGSTIKRIREASGSC 344
Query: 435 VTIQETRGVPGEMTVEISGTASQ 457
+ + ++R G+ I TA++
Sbjct: 345 IEVNDSRTKCGDDECVIIVTATE 367
Score = 72 (30.4 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 222 VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDAS 281
V +LLV + G +IGK G + I++ +N + + + +DD +VEV G+ S
Sbjct: 395 VKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISKGK-------KDD-LVEVSGEVS 446
Query: 282 GVHKAMELIGSHLRK 296
V A+ I LR+
Sbjct: 447 SVRDALIQIVLRLRE 461
Score = 71 (30.1 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 27/107 (25%), Positives = 50/107 (46%)
Query: 129 ESV-FRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPES 187
E+V ++LV ++ +G +IG+ G I +I + T A I I G ++ ++ E S
Sbjct: 393 ENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISKG-----KKDDLVEVSGEVSS 447
Query: 188 SLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAG 234
+ +LR+ + ++ DS ++ P S L +S AG
Sbjct: 448 VRDALIQIVLRLREDVLGDKDSVATRKPPARTDNCS--FLSGSSNAG 492
Score = 52 (23.4 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 212 SHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRV 257
SH V ++L P G +IGK G + +I+ + ++V
Sbjct: 26 SHDKINRDELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKV 71
>UNIPROTKB|F1SFQ4 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 CTD:5094 KO:K13162
OMA:CVVMLEL EMBL:CU928648 RefSeq:NP_001231441.1 UniGene:Ssc.4977
Ensembl:ENSSSCT00000000294 GeneID:397665 KEGG:ssc:397665
ArrayExpress:F1SFQ4 Uniprot:F1SFQ4
Length = 353
Score = 253 (94.1 bits), Expect = 3.9e-20, P = 3.9e-20
Identities = 89/339 (26%), Positives = 155/339 (45%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER + ++ P +++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
++ ++ + + S +++ + + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 72 FAMII---DKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVDRSIIPLFEMHMQ 312
V+V G + LP +R + + G + + ++ I + + L P
Sbjct: 129 AQVQVAG-DMLPN---STERAITIAGIPQSIIECVKQICVVMLETLSQSP--PKGVTIPY 182
Query: 313 MPNPQMDHIXXXXXXXXXXXXXXXXXXXXXH-----NPQYMPPPRQAESYYPPADLPPPM 367
P P + NP PP +A + +P P
Sbjct: 183 RPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPD 242
Query: 368 EKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQ-QMQIPLSYADAVIGTAGASISY 426
+ HQ ++ P+ HG++ + Q T ++ IP +IG GA I+
Sbjct: 243 LTKLHQ-LAMQQSHFPMT-HGNTGFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINE 300
Query: 427 IRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLI 465
IR+ SGA + I + V I+G+A+ + AQ LI
Sbjct: 301 IRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 339
>UNIPROTKB|Q3SYT9 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2" species:9913 "Bos
taurus" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:DAAA02012861 EMBL:DAAA02012860
EMBL:BC103397 IPI:IPI00696193 RefSeq:NP_001029883.1
UniGene:Bt.49118 SMR:Q3SYT9 STRING:Q3SYT9
Ensembl:ENSBTAT00000027662 GeneID:540653 KEGG:bta:540653
InParanoid:Q3SYT9 NextBio:20878753 Uniprot:Q3SYT9
Length = 349
Score = 251 (93.4 bits), Expect = 5.2e-20, P = 5.2e-20
Identities = 89/339 (26%), Positives = 155/339 (45%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER + ++ P +++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
++ ++ + + S +++ + + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 72 FAMII---DKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVDRSIIPLFEMHMQ 312
V+V G + LP +R + + G + + ++ I + + IP
Sbjct: 129 AQVQVAG-DMLPN---STERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPY------ 178
Query: 313 MPNPQMDHIXXXXXXXXXXXXXXXXXXXXXH-----NPQYMPPPRQAESYYPPADLPPPM 367
P P + NP PP +A + +P P
Sbjct: 179 RPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPD 238
Query: 368 EKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQ-QMQIPLSYADAVIGTAGASISY 426
+ HQ ++ P+ HG++ + Q T ++ IP +IG GA I+
Sbjct: 239 LTKLHQ-LAMQQSHFPMT-HGNTGFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINE 296
Query: 427 IRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLI 465
IR+ SGA + I + V I+G+A+ + AQ LI
Sbjct: 297 IRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 335
>UNIPROTKB|J3QT27 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AJ011931 EMBL:AJ239328
EMBL:AL133492 EMBL:AL133493 EMBL:AL592528 HGNC:HGNC:8651
ChiTaRS:PCBP3 ProteinModelPortal:J3QT27 Ensembl:ENST00000400305
Uniprot:J3QT27
Length = 322
Score = 193 (73.0 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 57/158 (36%), Positives = 92/158 (58%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER V I+ P ++ A
Sbjct: 25 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---PTDAIFKA 79
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
+ +K D ++S S++P+ + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 80 F--AMIAYKFEEDIINS-MSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 136
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R V + G + + ++ I
Sbjct: 137 AQVQVAG-DMLPN---STERAVTISGTPDAIIQCVKQI 170
Score = 103 (41.3 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 37/129 (28%), Positives = 57/129 (44%)
Query: 346 QY-MPPPRQAESYYPPA--DLP-PPMEKQ----PHQGISAYGREAPVNVHG-SSNAQSTP 396
QY +P P Q + A P PP+ + P + + + E N+ G SS ++P
Sbjct: 183 QYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASP 242
Query: 397 SMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTAS 456
T ++ IP +IG G I+ IR+ SGA + I E + I+GT +
Sbjct: 243 PASTH---ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPA 299
Query: 457 QVQTAQQLI 465
+ AQ LI
Sbjct: 300 NISLAQYLI 308
Score = 90 (36.7 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 23/95 (24%), Positives = 46/95 (48%)
Query: 206 GLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPV 265
G +S + G ++ +LL+ + GS+IGK+G TVK ++E S + + + P
Sbjct: 6 GRRMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCP- 63
Query: 266 FALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVD 300
+R+V + G + KA +I + +++
Sbjct: 64 -----ERIVTITGPTDAIFKAFAMIAYKFEEDIIN 93
Score = 89 (36.4 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 377 AYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVT 436
AY E + ++ SN+ +T VT ++ +P S ++IG G+ I IR S+GA V
Sbjct: 84 AYKFEEDI-INSMSNSPATSK--PPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQ 140
Query: 437 IQETRGVPG--EMTVEISGTASQV-QTAQQL 464
+ +P E V ISGT + Q +Q+
Sbjct: 141 VAGDM-LPNSTERAVTISGTPDAIIQCVKQI 170
>TAIR|locus:2161413 [details] [associations]
symbol:AT5G46190 "AT5G46190" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AB006698 HSSP:Q96AE4
KO:K13162 EMBL:AY039918 EMBL:AY113859 IPI:IPI00528964
RefSeq:NP_199431.1 UniGene:At.24400 ProteinModelPortal:Q9FNK3
SMR:Q9FNK3 IntAct:Q9FNK3 PRIDE:Q9FNK3 EnsemblPlants:AT5G46190.1
GeneID:834661 KEGG:ath:AT5G46190 TAIR:At5g46190 InParanoid:Q9FNK3
OMA:GCIIGKS PhylomeDB:Q9FNK3 ProtClustDB:CLSN2916231
ArrayExpress:Q9FNK3 Genevestigator:Q9FNK3 Uniprot:Q9FNK3
Length = 644
Score = 184 (69.8 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 51/145 (35%), Positives = 79/145 (54%)
Query: 131 VFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMI--SAKE----- 183
V+R+L P+ +GS+IG+ G+ I I +ETRARIK++D PG +ER + I S E
Sbjct: 45 VYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDIV 104
Query: 184 -----EPESSLP--PAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSL 236
E + S+P A LL+VH IV L + + + +LLVP+SQ +
Sbjct: 105 DIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSIV 164
Query: 237 IGKQGGTVKSIQEASNCIVRVLGAE 261
IGK G +K+I+ + V+V+ +
Sbjct: 165 IGKSGSIIKNIRGRTRANVKVVSKD 189
Score = 148 (57.2 bits), Expect = 4.0e-15, Sum P(3) = 4.0e-15
Identities = 46/171 (26%), Positives = 84/171 (49%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVM-ISAKEEPESSLPP 191
+++ + K+G +IG+ G IK I + + + I++ D + V+ ++A E P+
Sbjct: 320 KVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSM 379
Query: 192 AMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEAS 251
A++ +L + ++I D D D KV +LLV + G +IGK G + I++ +
Sbjct: 380 AVEAVLLLQEKINDE-DED----------KVKMQLLVSSKVIGCIIGKSGSIISEIRKRT 428
Query: 252 NCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK-FLVDR 301
+ + + P A +D +VE+ G+ S V A+ I LR L DR
Sbjct: 429 KADIHISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDR 479
Score = 125 (49.1 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 34/101 (33%), Positives = 55/101 (54%)
Query: 374 GISAYGREAPV-NV-HGSSNAQSTP---SMITQVTQQMQIPLSYADAVIGTAGASISYIR 428
GI YG PV N +GS+++ S+ + T +++IP + V+G G ++ IR
Sbjct: 542 GIYGYG-SFPVGNTSYGSNSSYSSNLYGGLPQSTTMEVRIPANAVGKVMGRGGGNLDNIR 600
Query: 429 RSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFM 469
R SGA + I +++ G ISGT+ Q +TA+ L Q F+
Sbjct: 601 RISGAMIEISDSKNSHGGRVALISGTSEQKRTAENLFQAFI 641
Score = 119 (46.9 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 38/136 (27%), Positives = 66/136 (48%)
Query: 184 EPESSLP--PAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQG 241
E + S+P A LL+VH IV L + + + +LLVP+SQ +IGK G
Sbjct: 110 ELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSIVIGKSG 169
Query: 242 GTVKSIQEASNCIVRVLG---AEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFL 298
+K+I+ + V+V+ ++ A+ D +V + G+ V KA+ + + + K +
Sbjct: 170 SIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVSAIMYK-V 228
Query: 299 VDRSIIPLFEMHMQMP 314
R IPL ++P
Sbjct: 229 SPREQIPLDTTVQEVP 244
Score = 71 (30.1 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 401 QVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVP-----GEMTVEISGTA 455
+V Q+ + +IG +G+ IS IR+ + A + I + P + VEISG
Sbjct: 398 KVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELVEISGEV 457
Query: 456 SQVQTAQQLIQ 466
S V+ A LIQ
Sbjct: 458 SNVRDA--LIQ 466
Score = 70 (29.7 bits), Expect = 5.1e-07, Sum P(3) = 5.1e-07
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 216 SGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRV 257
S K++ K++ +S+ G +IGK G T+K I++AS + V
Sbjct: 311 SSRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEV 352
Score = 56 (24.8 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 383 PVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETR- 441
PV VHG + + + +V S VIG G +I IR++SG+ + + ++R
Sbjct: 303 PV-VHGFGGSSRSEKLAIKVICSS----SKIGRVIGKGGLTIKGIRQASGSHIEVNDSRT 357
Query: 442 GVPGEMTVEISGTAS 456
+ + ++ T S
Sbjct: 358 NHDDDCVITVTATES 372
Score = 39 (18.8 bits), Expect = 4.0e-15, Sum P(3) = 4.0e-15
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 79 PEDQVPEDHVPEDQVPEDIVPED 101
P +Q+P D ++ I+P D
Sbjct: 230 PREQIPLDTTVQEVPASIIIPSD 252
>UNIPROTKB|E2QUE1 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:FWAPSVL EMBL:AAEX03016660 Ensembl:ENSCAFT00000018912
Uniprot:E2QUE1
Length = 371
Score = 193 (73.0 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 57/158 (36%), Positives = 92/158 (58%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER V I+ P ++ A
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---PTDAIFKA 103
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
+ +K D ++S S++P+ + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 104 F--AMIAYKFEEDIINS-MSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 160
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R V + G + + ++ I
Sbjct: 161 AQVQVAG-DMLPN---STERAVTISGTPDAIIQCVKQI 194
Score = 111 (44.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 30/114 (26%), Positives = 55/114 (48%)
Query: 187 SSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKS 246
S LP GLL H ++ G +S + G ++ +LL+ + GS+IGK+G TVK
Sbjct: 11 SVLPHGALGLLSHHPQLHFGRKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKK 70
Query: 247 IQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVD 300
++E S + + + P +R+V + G + KA +I + +++
Sbjct: 71 MREESGARINI-SEGNCP------ERIVTITGPTDAIFKAFAMIAYKFEEDIIN 117
Score = 103 (41.3 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 37/129 (28%), Positives = 57/129 (44%)
Query: 346 QY-MPPPRQAESYYPPA--DLP-PPMEKQ----PHQGISAYGREAPVNVHG-SSNAQSTP 396
QY +P P Q + A P PP+ + P + + + E N+ G SS ++P
Sbjct: 232 QYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASP 291
Query: 397 SMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTAS 456
T ++ IP +IG G I+ IR+ SGA + I E + I+GT +
Sbjct: 292 PASTH---ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPA 348
Query: 457 QVQTAQQLI 465
+ AQ LI
Sbjct: 349 NISLAQYLI 357
Score = 89 (36.4 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 377 AYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVT 436
AY E + ++ SN+ +T VT ++ +P S ++IG G+ I IR S+GA V
Sbjct: 108 AYKFEEDI-INSMSNSPATSK--PPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQ 164
Query: 437 IQETRGVPG--EMTVEISGTASQV-QTAQQL 464
+ +P E V ISGT + Q +Q+
Sbjct: 165 VAGDM-LPNSTERAVTISGTPDAIIQCVKQI 194
>MGI|MGI:1890470 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890470 GO:GO:0005829 GO:GO:0005739
GO:GO:0005634 GO:GO:0003677 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 EMBL:AF176327 EMBL:AK034811
EMBL:AK079564 IPI:IPI00411074 IPI:IPI00411075 RefSeq:NP_067543.2
UniGene:Mm.272803 ProteinModelPortal:P57722 SMR:P57722
STRING:P57722 PhosphoSite:P57722 PaxDb:P57722 PRIDE:P57722
Ensembl:ENSMUST00000001148 Ensembl:ENSMUST00000105411
Ensembl:ENSMUST00000168465 GeneID:59093 KEGG:mmu:59093
UCSC:uc007fuz.2 UCSC:uc007fva.2 InParanoid:P57722 NextBio:314746
Bgee:P57722 CleanEx:MM_PCBP3 Genevestigator:P57722
GermOnline:ENSMUSG00000001120 Uniprot:P57722
Length = 371
Score = 193 (73.0 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 57/158 (36%), Positives = 92/158 (58%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER V I+ P ++ A
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---PTDAIFKA 103
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
+ +K D ++S S++P+ + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 104 F--AMIAYKFEEDIINS-MSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 160
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R V + G + + ++ I
Sbjct: 161 AQVQVAG-DMLPN---STERAVTISGTPDAIIQCVKQI 194
Score = 103 (41.3 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 37/129 (28%), Positives = 57/129 (44%)
Query: 346 QY-MPPPRQAESYYPPA--DLP-PPMEKQ----PHQGISAYGREAPVNVHG-SSNAQSTP 396
QY +P P Q + A P PP+ + P + + + E N+ G SS ++P
Sbjct: 232 QYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASP 291
Query: 397 SMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTAS 456
T ++ IP +IG G I+ IR+ SGA + I E + I+GT +
Sbjct: 292 PASTH---ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPA 348
Query: 457 QVQTAQQLI 465
+ AQ LI
Sbjct: 349 NISLAQYLI 357
Score = 102 (41.0 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 28/112 (25%), Positives = 53/112 (47%)
Query: 189 LPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQ 248
LP + G L H + G +S + G ++ +LL+ + GS+IGK+G TVK ++
Sbjct: 13 LPHSTLGTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMR 72
Query: 249 EASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVD 300
E S + + + P +R+V + G + KA +I + +++
Sbjct: 73 EESGARINI-SEGNCP------ERIVTITGPTDAIFKAFAMIAYKFEEDIIN 117
Score = 89 (36.4 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 377 AYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVT 436
AY E + ++ SN+ +T VT ++ +P S ++IG G+ I IR S+GA V
Sbjct: 108 AYKFEEDI-INSMSNSPATSK--PPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQ 164
Query: 437 IQETRGVPG--EMTVEISGTASQV-QTAQQL 464
+ +P E V ISGT + Q +Q+
Sbjct: 165 VAGDM-LPNSTERAVTISGTPDAIIQCVKQI 194
>UNIPROTKB|D4A1P3 [details] [associations]
symbol:Pcbp3 "Protein Pcbp3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1307430 GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:CH473988 OrthoDB:EOG4XH00F IPI:IPI00558998 UniGene:Rn.107537
Ensembl:ENSRNOT00000042120 Uniprot:D4A1P3
Length = 371
Score = 193 (73.0 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 57/158 (36%), Positives = 92/158 (58%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER V I+ P ++ A
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---PTDAIFKA 103
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
+ +K D ++S S++P+ + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 104 F--AMIAYKFEEDIINS-MSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 160
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R V + G + + ++ I
Sbjct: 161 AQVQVAG-DMLPN---STERAVTISGTPDAIIQCVKQI 194
Score = 103 (41.3 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 37/129 (28%), Positives = 57/129 (44%)
Query: 346 QY-MPPPRQAESYYPPA--DLP-PPMEKQ----PHQGISAYGREAPVNVHG-SSNAQSTP 396
QY +P P Q + A P PP+ + P + + + E N+ G SS ++P
Sbjct: 232 QYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASP 291
Query: 397 SMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTAS 456
T ++ IP +IG G I+ IR+ SGA + I E + I+GT +
Sbjct: 292 PASTH---ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPA 348
Query: 457 QVQTAQQLI 465
+ AQ LI
Sbjct: 349 NISLAQYLI 357
Score = 98 (39.6 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 28/114 (24%), Positives = 53/114 (46%)
Query: 187 SSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKS 246
S LP + L H + G +S + G ++ +LL+ + GS+IGK+G TVK
Sbjct: 11 SILPHSTLSTLSHHPELHFGGKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKK 70
Query: 247 IQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVD 300
++E S + + + P +R+V + G + KA +I + +++
Sbjct: 71 MREESGARINI-SEGNCP------ERIVTITGPTDAIFKAFAMIAYKFEEDIIN 117
Score = 89 (36.4 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 377 AYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVT 436
AY E + ++ SN+ +T VT ++ +P S ++IG G+ I IR S+GA V
Sbjct: 108 AYKFEEDI-INSMSNSPATSK--PPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQ 164
Query: 437 IQETRGVPG--EMTVEISGTASQV-QTAQQL 464
+ +P E V ISGT + Q +Q+
Sbjct: 165 VAGDM-LPNSTERAVTISGTPDAIIQCVKQI 194
>UNIPROTKB|P57721 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0016071 "mRNA metabolic process" evidence=NAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0016071
GO:GO:0003677 GO:GO:0003723 GO:GO:0030529 eggNOG:NOG315872
HOVERGEN:HBG053520 KO:K13162 EMBL:AF176329 EMBL:AK094301
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 EMBL:BC012061 IPI:IPI00027970 IPI:IPI00101278
IPI:IPI00167750 IPI:IPI00410586 IPI:IPI00410587
RefSeq:NP_001123613.1 RefSeq:NP_065389.2 UniGene:Hs.474049
ProteinModelPortal:P57721 SMR:P57721 IntAct:P57721
MINT:MINT-2862183 STRING:P57721 PhosphoSite:P57721 DMDM:296439262
PaxDb:P57721 PRIDE:P57721 Ensembl:ENST00000400308
Ensembl:ENST00000400309 Ensembl:ENST00000400310
Ensembl:ENST00000400314 Ensembl:ENST00000449640 GeneID:54039
KEGG:hsa:54039 UCSC:uc002zhp.2 UCSC:uc002zhq.2 UCSC:uc002zhs.2
CTD:54039 GeneCards:GC21P047063 HGNC:HGNC:8651 HPA:HPA030247
MIM:608502 neXtProt:NX_P57721 PharmGKB:PA32990 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 GenomeRNAi:54039 NextBio:56330
ArrayExpress:P57721 Bgee:P57721 CleanEx:HS_PCBP3
Genevestigator:P57721 GermOnline:ENSG00000183570 Uniprot:P57721
Length = 371
Score = 193 (73.0 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 57/158 (36%), Positives = 92/158 (58%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER V I+ P ++ A
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---PTDAIFKA 103
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
+ +K D ++S S++P+ + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 104 F--AMIAYKFEEDIINS-MSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 160
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R V + G + + ++ I
Sbjct: 161 AQVQVAG-DMLPN---STERAVTISGTPDAIIQCVKQI 194
Score = 103 (41.3 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
Identities = 37/129 (28%), Positives = 57/129 (44%)
Query: 346 QY-MPPPRQAESYYPPA--DLP-PPMEKQ----PHQGISAYGREAPVNVHG-SSNAQSTP 396
QY +P P Q + A P PP+ + P + + + E N+ G SS ++P
Sbjct: 232 QYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASP 291
Query: 397 SMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTAS 456
T ++ IP +IG G I+ IR+ SGA + I E + I+GT +
Sbjct: 292 PASTH---ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPA 348
Query: 457 QVQTAQQLI 465
+ AQ LI
Sbjct: 349 NISLAQYLI 357
Score = 96 (38.9 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 28/114 (24%), Positives = 53/114 (46%)
Query: 187 SSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKS 246
S LP + L H + G +S + G ++ +LL+ + GS+IGK+G TVK
Sbjct: 11 SVLPHSTLSTLSHHPQPQFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKK 70
Query: 247 IQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVD 300
++E S + + + P +R+V + G + KA +I + +++
Sbjct: 71 MREESGARINI-SEGNCP------ERIVTITGPTDAIFKAFAMIAYKFEEDIIN 117
Score = 89 (36.4 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 377 AYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVT 436
AY E + ++ SN+ +T VT ++ +P S ++IG G+ I IR S+GA V
Sbjct: 108 AYKFEEDI-INSMSNSPATSK--PPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQ 164
Query: 437 IQETRGVPG--EMTVEISGTASQV-QTAQQL 464
+ +P E V ISGT + Q +Q+
Sbjct: 165 VAGDM-LPNSTERAVTISGTPDAIIQCVKQI 194
>UNIPROTKB|Q17QV0 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F EMBL:DAAA02003497 EMBL:DAAA02003498
EMBL:DAAA02003499 EMBL:DAAA02003500 EMBL:DAAA02003501 EMBL:BC118166
IPI:IPI00733966 RefSeq:NP_001069752.1 UniGene:Bt.27304 SMR:Q17QV0
Ensembl:ENSBTAT00000043482 GeneID:613725 KEGG:bta:613725
InParanoid:Q17QV0 NextBio:20898729 Uniprot:Q17QV0
Length = 361
Score = 193 (73.0 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 57/158 (36%), Positives = 92/158 (58%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER V I+ P ++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---PTDAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
+ +K D ++S S++P+ + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 72 F--AMIAYKFEEDIINS-MSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R V + G + + ++ I
Sbjct: 129 AQVQVAG-DMLPN---STERAVTISGTPDAIIQCVKQI 162
Score = 102 (41.0 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 31/109 (28%), Positives = 48/109 (44%)
Query: 358 YPPADLPPPMEKQPHQGISAYGREAPVNVHG-SSNAQSTPSMITQVTQQMQIPLSYADAV 416
+PP P P + + + E N+ G SS ++P T ++ IP +
Sbjct: 244 FPPLGQTNPAF--PGEKLPLHSSEEAQNLMGQSSGLDASPPASTH---ELTIPNDLIGCI 298
Query: 417 IGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLI 465
IG G I+ IR+ SGA + I E + I+GT + + AQ LI
Sbjct: 299 IGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLI 347
Score = 89 (36.4 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 22/91 (24%), Positives = 45/91 (49%)
Query: 210 DSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQ 269
+S + G ++ +LL+ + GS+IGK+G TVK ++E S + + + P
Sbjct: 2 ESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCP----- 55
Query: 270 DDRVVEVVGDASGVHKAMELIGSHLRKFLVD 300
+R+V + G + KA +I + +++
Sbjct: 56 -ERIVTITGPTDAIFKAFAMIAYKFEEDIIN 85
Score = 89 (36.4 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 377 AYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVT 436
AY E + ++ SN+ +T VT ++ +P S ++IG G+ I IR S+GA V
Sbjct: 76 AYKFEEDI-INSMSNSPATSK--PPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQ 132
Query: 437 IQETRGVPG--EMTVEISGTASQV-QTAQQL 464
+ +P E V ISGT + Q +Q+
Sbjct: 133 VAGDM-LPNSTERAVTISGTPDAIIQCVKQI 162
>UNIPROTKB|E9PFP8 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 HGNC:HGNC:8651 ChiTaRS:PCBP3 IPI:IPI00550365
ProteinModelPortal:E9PFP8 SMR:E9PFP8 PRIDE:E9PFP8
Ensembl:ENST00000400304 UCSC:uc002zht.2 ArrayExpress:E9PFP8
Bgee:E9PFP8 Uniprot:E9PFP8
Length = 361
Score = 193 (73.0 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 57/158 (36%), Positives = 92/158 (58%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER V I+ P ++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---PTDAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
+ +K D ++S S++P+ + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 72 F--AMIAYKFEEDIINS-MSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R V + G + + ++ I
Sbjct: 129 AQVQVAG-DMLPN---STERAVTISGTPDAIIQCVKQI 162
Score = 102 (41.0 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 31/109 (28%), Positives = 48/109 (44%)
Query: 358 YPPADLPPPMEKQPHQGISAYGREAPVNVHG-SSNAQSTPSMITQVTQQMQIPLSYADAV 416
+PP P P + + + E N+ G SS ++P T ++ IP +
Sbjct: 244 FPPLGQTNPAF--PGEKLPLHSSEEAQNLMGQSSGLDASPPASTH---ELTIPNDLIGCI 298
Query: 417 IGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLI 465
IG G I+ IR+ SGA + I E + I+GT + + AQ LI
Sbjct: 299 IGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLI 347
Score = 89 (36.4 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 22/91 (24%), Positives = 45/91 (49%)
Query: 210 DSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQ 269
+S + G ++ +LL+ + GS+IGK+G TVK ++E S + + + P
Sbjct: 2 ESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCP----- 55
Query: 270 DDRVVEVVGDASGVHKAMELIGSHLRKFLVD 300
+R+V + G + KA +I + +++
Sbjct: 56 -ERIVTITGPTDAIFKAFAMIAYKFEEDIIN 85
Score = 89 (36.4 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 377 AYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVT 436
AY E + ++ SN+ +T VT ++ +P S ++IG G+ I IR S+GA V
Sbjct: 76 AYKFEEDI-INSMSNSPATSK--PPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQ 132
Query: 437 IQETRGVPG--EMTVEISGTASQV-QTAQQL 464
+ +P E V ISGT + Q +Q+
Sbjct: 133 VAGDM-LPNSTERAVTISGTPDAIIQCVKQI 162
>UNIPROTKB|Q5E9A3 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9913 "Bos
taurus" [GO:0003697 "single-stranded DNA binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
EMBL:BT021017 IPI:IPI00687560 RefSeq:NP_001015565.1 UniGene:Bt.4620
ProteinModelPortal:Q5E9A3 SMR:Q5E9A3 MINT:MINT-6732977
STRING:Q5E9A3 PRIDE:Q5E9A3 Ensembl:ENSBTAT00000011824 GeneID:509917
KEGG:bta:509917 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
InParanoid:Q5E9A3 KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K
NextBio:20869194 Uniprot:Q5E9A3
Length = 356
Score = 186 (70.5 bits), Expect = 7.8e-19, Sum P(2) = 7.8e-19
Identities = 50/158 (31%), Positives = 93/158 (58%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +K+I EE+ ARI I +G ER + ++ P +++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTG---PTNAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
++ ++ + ++S +++ + + V+ +L+VPA+Q GSLIGK G +K I+E++
Sbjct: 72 FAMII---DKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R + + G V + ++ I
Sbjct: 129 AQVQVAG-DMLPN---STERAITIAGVPQSVTECVKQI 162
Score = 107 (42.7 bits), Expect = 7.8e-19, Sum P(2) = 7.8e-19
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQE-TRGVPGEMTVEISGTASQV 458
TQ T ++ IP + +IG GA+I+ IR+ SGA + I G G V I+G+A+ +
Sbjct: 278 TQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQ-VTITGSAASI 336
Query: 459 QTAQQLIQNFMAEAAAPSQAQMGAS 483
AQ LI A S+ MG S
Sbjct: 337 SLAQYLIN-----ARLSSEKGMGCS 356
Score = 88 (36.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 210 DSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQ 269
D+ SG ++ +LL+ + GS+IGK+G +VK I+E S + + + P
Sbjct: 2 DAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP----- 55
Query: 270 DDRVVEVVGDASGVHKAMELI 290
+R++ + G + + KA +I
Sbjct: 56 -ERIITLTGPTNAIFKAFAMI 75
Score = 84 (34.6 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 30/104 (28%), Positives = 44/104 (42%)
Query: 389 SSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPG--E 446
SS ST + VT ++ +P + ++IG G I IR S+GA V + +P E
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNSTE 143
Query: 447 MTVEISGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNP 490
+ I+G V + I M E SQ+ G Y P
Sbjct: 144 RAITIAGVPQSVTECVKQICLVMLETL--SQSPQGRVMTIPYQP 185
>UNIPROTKB|J9P7Y9 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5093
KO:K12889 OMA:RNISERN EMBL:AAEX03007630 RefSeq:XP_538537.1
Ensembl:ENSCAFT00000005324 GeneID:481417 KEGG:cfa:481417
Uniprot:J9P7Y9
Length = 356
Score = 186 (70.5 bits), Expect = 7.8e-19, Sum P(2) = 7.8e-19
Identities = 50/158 (31%), Positives = 93/158 (58%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +K+I EE+ ARI I +G ER + ++ P +++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTG---PTNAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
++ ++ + ++S +++ + + V+ +L+VPA+Q GSLIGK G +K I+E++
Sbjct: 72 FAMII---DKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R + + G V + ++ I
Sbjct: 129 AQVQVAG-DMLPN---STERAITIAGVPQSVTECVKQI 162
Score = 107 (42.7 bits), Expect = 7.8e-19, Sum P(2) = 7.8e-19
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQE-TRGVPGEMTVEISGTASQV 458
TQ T ++ IP + +IG GA+I+ IR+ SGA + I G G V I+G+A+ +
Sbjct: 278 TQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQ-VTITGSAASI 336
Query: 459 QTAQQLIQNFMAEAAAPSQAQMGAS 483
AQ LI A S+ MG S
Sbjct: 337 SLAQYLIN-----ARLSSEKGMGCS 356
Score = 88 (36.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 210 DSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQ 269
D+ SG ++ +LL+ + GS+IGK+G +VK I+E S + + + P
Sbjct: 2 DAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP----- 55
Query: 270 DDRVVEVVGDASGVHKAMELI 290
+R++ + G + + KA +I
Sbjct: 56 -ERIITLTGPTNAIFKAFAMI 75
Score = 84 (34.6 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 30/104 (28%), Positives = 44/104 (42%)
Query: 389 SSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPG--E 446
SS ST + VT ++ +P + ++IG G I IR S+GA V + +P E
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNSTE 143
Query: 447 MTVEISGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNP 490
+ I+G V + I M E SQ+ G Y P
Sbjct: 144 RAITIAGVPQSVTECVKQICLVMLETL--SQSPQGRVMTIPYQP 185
>UNIPROTKB|Q15365 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9606
"Homo sapiens" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
[GO:0016071 "mRNA metabolic process" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0003723 GO:GO:0003697 GO:GO:0030529 GO:GO:0000398
eggNOG:NOG315872 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K EMBL:X78137 EMBL:U24223
EMBL:Z29505 EMBL:BC039742 IPI:IPI00016610 RefSeq:NP_006187.2
UniGene:Hs.2853 PDB:1WVN PDB:1ZTG PDB:3VKE PDBsum:1WVN PDBsum:1ZTG
PDBsum:3VKE ProteinModelPortal:Q15365 SMR:Q15365 DIP:DIP-38136N
IntAct:Q15365 MINT:MINT-96267 STRING:Q15365 PhosphoSite:Q15365
DMDM:42560548 OGP:Q15365 REPRODUCTION-2DPAGE:IPI00016610
UCD-2DPAGE:Q15365 PaxDb:Q15365 PeptideAtlas:Q15365 PRIDE:Q15365
DNASU:5093 Ensembl:ENST00000303577 GeneID:5093 KEGG:hsa:5093
UCSC:uc002sgf.3 GeneCards:GC02P070314 HGNC:HGNC:8647 HPA:CAB037113
MIM:601209 neXtProt:NX_Q15365 PharmGKB:PA32986 InParanoid:Q15365
PhylomeDB:Q15365 ChiTaRS:PCBP1 EvolutionaryTrace:Q15365
GenomeRNAi:5093 NextBio:19644 ArrayExpress:Q15365 Bgee:Q15365
CleanEx:HS_PCBP1 Genevestigator:Q15365 GermOnline:ENSG00000169564
Uniprot:Q15365
Length = 356
Score = 186 (70.5 bits), Expect = 7.8e-19, Sum P(2) = 7.8e-19
Identities = 50/158 (31%), Positives = 93/158 (58%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +K+I EE+ ARI I +G ER + ++ P +++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTG---PTNAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
++ ++ + ++S +++ + + V+ +L+VPA+Q GSLIGK G +K I+E++
Sbjct: 72 FAMII---DKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R + + G V + ++ I
Sbjct: 129 AQVQVAG-DMLPN---STERAITIAGVPQSVTECVKQI 162
Score = 107 (42.7 bits), Expect = 7.8e-19, Sum P(2) = 7.8e-19
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQE-TRGVPGEMTVEISGTASQV 458
TQ T ++ IP + +IG GA+I+ IR+ SGA + I G G V I+G+A+ +
Sbjct: 278 TQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQ-VTITGSAASI 336
Query: 459 QTAQQLIQNFMAEAAAPSQAQMGAS 483
AQ LI A S+ MG S
Sbjct: 337 SLAQYLIN-----ARLSSEKGMGCS 356
Score = 88 (36.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 210 DSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQ 269
D+ SG ++ +LL+ + GS+IGK+G +VK I+E S + + + P
Sbjct: 2 DAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP----- 55
Query: 270 DDRVVEVVGDASGVHKAMELI 290
+R++ + G + + KA +I
Sbjct: 56 -ERIITLTGPTNAIFKAFAMI 75
Score = 84 (34.6 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 30/104 (28%), Positives = 44/104 (42%)
Query: 389 SSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPG--E 446
SS ST + VT ++ +P + ++IG G I IR S+GA V + +P E
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNSTE 143
Query: 447 MTVEISGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNP 490
+ I+G V + I M E SQ+ G Y P
Sbjct: 144 RAITIAGVPQSVTECVKQICLVMLETL--SQSPQGRVMTIPYQP 185
>UNIPROTKB|I3LEC2 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0003697 GeneTree:ENSGT00550000074311 KO:K12889
OMA:RNISERN EMBL:CU928518 RefSeq:XP_003125105.1
Ensembl:ENSSSCT00000028976 GeneID:100511501 KEGG:ssc:100511501
Uniprot:I3LEC2
Length = 356
Score = 186 (70.5 bits), Expect = 7.8e-19, Sum P(2) = 7.8e-19
Identities = 50/158 (31%), Positives = 93/158 (58%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +K+I EE+ ARI I +G ER + ++ P +++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTG---PTNAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
++ ++ + ++S +++ + + V+ +L+VPA+Q GSLIGK G +K I+E++
Sbjct: 72 FAMII---DKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R + + G V + ++ I
Sbjct: 129 AQVQVAG-DMLPN---STERAITIAGVPQSVTECVKQI 162
Score = 107 (42.7 bits), Expect = 7.8e-19, Sum P(2) = 7.8e-19
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQE-TRGVPGEMTVEISGTASQV 458
TQ T ++ IP + +IG GA+I+ IR+ SGA + I G G V I+G+A+ +
Sbjct: 278 TQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQ-VTITGSAASI 336
Query: 459 QTAQQLIQNFMAEAAAPSQAQMGAS 483
AQ LI A S+ MG S
Sbjct: 337 SLAQYLIN-----ARLSSEKGMGCS 356
Score = 88 (36.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 210 DSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQ 269
D+ SG ++ +LL+ + GS+IGK+G +VK I+E S + + + P
Sbjct: 2 DAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP----- 55
Query: 270 DDRVVEVVGDASGVHKAMELI 290
+R++ + G + + KA +I
Sbjct: 56 -ERIITLTGPTNAIFKAFAMI 75
Score = 84 (34.6 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 30/104 (28%), Positives = 44/104 (42%)
Query: 389 SSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPG--E 446
SS ST + VT ++ +P + ++IG G I IR S+GA V + +P E
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNSTE 143
Query: 447 MTVEISGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNP 490
+ I+G V + I M E SQ+ G Y P
Sbjct: 144 RAITIAGVPQSVTECVKQICLVMLETL--SQSPQGRVMTIPYQP 185
>MGI|MGI:1345635 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008494 "translation activator
activity" evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=TAS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1345635 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 GO:GO:0008494 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K12889
OMA:RNISERN OrthoDB:EOG46WZ8K ChiTaRS:PCBP1 EMBL:AF139894
EMBL:AF139895 EMBL:BC069915 EMBL:BC004793 IPI:IPI00128904
RefSeq:NP_035995.1 UniGene:Mm.274146 ProteinModelPortal:P60335
SMR:P60335 IntAct:P60335 STRING:P60335 PhosphoSite:P60335
REPRODUCTION-2DPAGE:IPI00128904 REPRODUCTION-2DPAGE:P60335
PaxDb:P60335 PRIDE:P60335 Ensembl:ENSMUST00000053015 GeneID:23983
KEGG:mmu:23983 InParanoid:P60335 NextBio:303869 Bgee:P60335
CleanEx:MM_PCBP1 Genevestigator:P60335
GermOnline:ENSMUSG00000051695 Uniprot:P60335
Length = 356
Score = 186 (70.5 bits), Expect = 7.8e-19, Sum P(2) = 7.8e-19
Identities = 50/158 (31%), Positives = 93/158 (58%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +K+I EE+ ARI I +G ER + ++ P +++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTG---PTNAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
++ ++ + ++S +++ + + V+ +L+VPA+Q GSLIGK G +K I+E++
Sbjct: 72 FAMII---DKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R + + G V + ++ I
Sbjct: 129 AQVQVAG-DMLPN---STERAITIAGVPQSVTECVKQI 162
Score = 107 (42.7 bits), Expect = 7.8e-19, Sum P(2) = 7.8e-19
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQE-TRGVPGEMTVEISGTASQV 458
TQ T ++ IP + +IG GA+I+ IR+ SGA + I G G V I+G+A+ +
Sbjct: 278 TQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQ-VTITGSAASI 336
Query: 459 QTAQQLIQNFMAEAAAPSQAQMGAS 483
AQ LI A S+ MG S
Sbjct: 337 SLAQYLIN-----ARLSSEKGMGCS 356
Score = 88 (36.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 210 DSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQ 269
D+ SG ++ +LL+ + GS+IGK+G +VK I+E S + + + P
Sbjct: 2 DAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP----- 55
Query: 270 DDRVVEVVGDASGVHKAMELI 290
+R++ + G + + KA +I
Sbjct: 56 -ERIITLTGPTNAIFKAFAMI 75
Score = 84 (34.6 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 30/104 (28%), Positives = 44/104 (42%)
Query: 389 SSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPG--E 446
SS ST + VT ++ +P + ++IG G I IR S+GA V + +P E
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNSTE 143
Query: 447 MTVEISGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNP 490
+ I+G V + I M E SQ+ G Y P
Sbjct: 144 RAITIAGVPQSVTECVKQICLVMLETL--SQSPQGRVMTIPYQP 185
>RGD|1561319 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1561319 GO:GO:0003723 GO:GO:0003697 OMA:RNISERN
OrthoDB:EOG46WZ8K IPI:IPI00882480 ProteinModelPortal:D3ZS68
SMR:D3ZS68 PRIDE:D3ZS68 Ensembl:ENSRNOT00000023806 UCSC:RGD:1561319
Uniprot:D3ZS68
Length = 356
Score = 186 (70.5 bits), Expect = 7.8e-19, Sum P(2) = 7.8e-19
Identities = 50/158 (31%), Positives = 93/158 (58%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +K+I EE+ ARI I +G ER + ++ P +++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTG---PTNAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
++ ++ + ++S +++ + + V+ +L+VPA+Q GSLIGK G +K I+E++
Sbjct: 72 FAMII---DKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R + + G V + ++ I
Sbjct: 129 AQVQVAG-DMLPN---STERAITIAGVPQSVTECVKQI 162
Score = 107 (42.7 bits), Expect = 7.8e-19, Sum P(2) = 7.8e-19
Identities = 31/85 (36%), Positives = 44/85 (51%)
Query: 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQE-TRGVPGEMTVEISGTASQV 458
TQ T ++ IP + +IG GA+I+ IR+ SGA + I G G V I+G+A+ +
Sbjct: 278 TQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQ-VTITGSAASI 336
Query: 459 QTAQQLIQNFMAEAAAPSQAQMGAS 483
AQ LI A S+ MG S
Sbjct: 337 SLAQYLIN-----ARLSSEKGMGCS 356
Score = 88 (36.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 210 DSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQ 269
D+ SG ++ +LL+ + GS+IGK+G +VK I+E S + + + P
Sbjct: 2 DAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP----- 55
Query: 270 DDRVVEVVGDASGVHKAMELI 290
+R++ + G + + KA +I
Sbjct: 56 -ERIITLTGPTNAIFKAFAMI 75
Score = 84 (34.6 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 30/104 (28%), Positives = 44/104 (42%)
Query: 389 SSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPG--E 446
SS ST + VT ++ +P + ++IG G I IR S+GA V + +P E
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNSTE 143
Query: 447 MTVEISGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNP 490
+ I+G V + I M E SQ+ G Y P
Sbjct: 144 RAITIAGVPQSVTECVKQICLVMLETL--SQSPQGRVMTIPYQP 185
>RGD|1307430 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307430 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 UniGene:Rn.107537
EMBL:BC079196 IPI:IPI00464574 RefSeq:NP_001011945.1 SMR:Q6AY48
IntAct:Q6AY48 MINT:MINT-7138861 Ensembl:ENSRNOT00000001675
GeneID:294336 KEGG:rno:294336 NextBio:638024 Genevestigator:Q6AY48
Uniprot:Q6AY48
Length = 319
Score = 193 (73.0 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 57/158 (36%), Positives = 92/158 (58%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER V I+ P ++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---PTDAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
+ +K D ++S S++P+ + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 72 F--AMIAYKFEEDIINS-MSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R V + G + + ++ I
Sbjct: 129 AQVQVAG-DMLPN---STERAVTISGTPDAIIQCVKQI 162
Score = 92 (37.4 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQ 462
T ++ IP +IG G I+ IR+ SGA + I E + I+GT + + AQ
Sbjct: 243 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 302
Query: 463 QLI 465
LI
Sbjct: 303 YLI 305
Score = 89 (36.4 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 22/91 (24%), Positives = 45/91 (49%)
Query: 210 DSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQ 269
+S + G ++ +LL+ + GS+IGK+G TVK ++E S + + + P
Sbjct: 2 ESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCP----- 55
Query: 270 DDRVVEVVGDASGVHKAMELIGSHLRKFLVD 300
+R+V + G + KA +I + +++
Sbjct: 56 -ERIVTITGPTDAIFKAFAMIAYKFEEDIIN 85
Score = 89 (36.4 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 377 AYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVT 436
AY E + ++ SN+ +T VT ++ +P S ++IG G+ I IR S+GA V
Sbjct: 76 AYKFEEDI-INSMSNSPATSK--PPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQ 132
Query: 437 IQETRGVPG--EMTVEISGTASQV-QTAQQL 464
+ +P E V ISGT + Q +Q+
Sbjct: 133 VAGDM-LPNSTERAVTISGTPDAIIQCVKQI 162
Score = 46 (21.3 bits), Expect = 9.2e-14, Sum P(2) = 9.2e-14
Identities = 21/79 (26%), Positives = 32/79 (40%)
Query: 349 PPPRQAESYYPPADLPPPMEKQ----PHQGISAY-GREAP-VN-VHGSSNAQSTPSMITQ 401
PP Q +P D PP P+ I GR+ +N + S AQ + T+
Sbjct: 223 PPLGQTNPAFPGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE 282
Query: 402 VTQQMQIPLSYADAVIGTA 420
+ + QI ++ A I A
Sbjct: 283 GSSERQITITGTPANISLA 301
>UNIPROTKB|C9J0A4 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00385206 ProteinModelPortal:C9J0A4 SMR:C9J0A4
STRING:C9J0A4 Ensembl:ENST00000471622 ArrayExpress:C9J0A4
Bgee:C9J0A4 Uniprot:C9J0A4
Length = 323
Score = 174 (66.3 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 57/151 (37%), Positives = 77/151 (50%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
RML+ ++VGSIIG+KGE +K+I E++ ARI I +G ER I+
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGSTA-------- 70
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVST-----KLLVPASQAGSLIGKQGGTVKSI 247
+ I LD D AP+ GG VS +L++PASQ GSLIGK G +K I
Sbjct: 71 --AVFHAVSMIAFKLDEDLCAAPAN-GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEI 127
Query: 248 QEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+E + V+V G DL +R V V G
Sbjct: 128 RETTGAQVQVAG--DL--LPNSTERAVTVSG 154
Score = 115 (45.5 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 48/151 (31%), Positives = 67/151 (44%)
Query: 350 PPRQAE-SYYPPADLPPPMEKQPHQGISA---YGREAPVNVHG----SSNAQ--STPSMI 399
PP+ A Y+P L + +QG S YG P V SS+A +TPS++
Sbjct: 174 PPKGATIPYHPSLSLGTVL-LSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVV 232
Query: 400 ------TQVT-QQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEIS 452
TQ + Q+ +P VIG G+ IS IR+ SGA + I GE V I+
Sbjct: 233 PGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTIT 292
Query: 453 GTASQVQTAQQLIQNFMAEAAAPSQAQMGAS 483
G+ + AQ LI + A Q G+S
Sbjct: 293 GSPVSIALAQYLITAWAAAGLGGLHCQDGSS 323
Score = 79 (32.9 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 20/73 (27%), Positives = 38/73 (52%)
Query: 222 VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDAS 281
++ ++L+ + GS+IGK+G TVK I+E S+ + + P +R+ + G +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI-SEGSCP------ERITTITGSTA 70
Query: 282 GVHKAMELIGSHL 294
V A+ +I L
Sbjct: 71 AVFHAVSMIAFKL 83
>TAIR|locus:2035807 [details] [associations]
symbol:AT1G14170 "AT1G14170" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009737 "response to abscisic acid stimulus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0003723 EMBL:AC007576
KO:K13162 HOGENOM:HOG000240086 IPI:IPI00521103 PIR:C86275
RefSeq:NP_001117282.1 UniGene:At.43386 ProteinModelPortal:Q9XI71
SMR:Q9XI71 PRIDE:Q9XI71 EnsemblPlants:AT1G14170.3 GeneID:837976
KEGG:ath:AT1G14170 TAIR:At1g14170 OMA:GATIRVN PhylomeDB:Q9XI71
ProtClustDB:CLSN2690952 Genevestigator:Q9XI71 Uniprot:Q9XI71
Length = 479
Score = 233 (87.1 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 61/178 (34%), Positives = 100/178 (56%)
Query: 129 ESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAV-MISAKEE--- 184
++V+R L P +K GSIIG+ GE K+I ET++ ++I + PG ER V M S EE
Sbjct: 43 DTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNH 102
Query: 185 --PESSLP-PAMDGLLRVHKRIVDGLDSDS-SHAPSGTGGK--VSTKLLVPASQAGSLIG 238
+ L PA+D L +VH +V D D + + G K V+ ++LVP+ Q G +IG
Sbjct: 103 FGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIG 162
Query: 239 KQGGTVKSIQEASNCIVRVLGAEDLPVFAL--QDDRVVEVVGDASGVHKAMELIGSHL 294
K G +++++ +N +RV+ + LP AL D ++ ++G+ V +A+ + S L
Sbjct: 163 KGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVASLL 219
Score = 221 (82.9 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 53/174 (30%), Positives = 93/174 (53%)
Query: 135 LVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMD 194
+ PA+ VG +IG+ G FI +I +ET A I++ + + IS+KE E PA++
Sbjct: 274 ICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQ-SPAVN 332
Query: 195 GLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCI 254
+R+ +R + + D++ +ST+LLV +SQ G LIGK G + ++ +
Sbjct: 333 AAIRLQQRCSEKVGKDANDLA------ISTRLLVSSSQIGCLIGKGGAVISEMRSVTRAN 386
Query: 255 VRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLR--KFLVDRSIIPL 306
+R+L ED+P A +D+ +V++ G KA+ + LR F +D ++ L
Sbjct: 387 IRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRANSFDMDHGLVLL 440
Score = 56 (24.8 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 409 PLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEIS 452
P VIG G I+ IR+ +GAT+ + + + + IS
Sbjct: 276 PAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFIS 319
Score = 55 (24.4 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 20/77 (25%), Positives = 35/77 (45%)
Query: 402 VTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVP-----GEMTVEISGTAS 456
++ ++ + S +IG GA IS +R + A + I + VP E V+I+G+
Sbjct: 354 ISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPD 413
Query: 457 QVQTA-QQLIQNFMAEA 472
A Q+I A +
Sbjct: 414 AAMKALTQVILRLRANS 430
Score = 42 (19.8 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 86 DHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTE 120
D V D +D +D+ L EKQ V + V S +
Sbjct: 122 DMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQ 156
>UNIPROTKB|G3V0E8 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CH471054 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 RefSeq:NP_001122386.1 UniGene:Hs.546271 GeneID:5094
KEGG:hsa:5094 CTD:5094 HGNC:HGNC:8648 KO:K13162 ChiTaRS:PCBP2
GenomeRNAi:5094 NextBio:19648 ProteinModelPortal:G3V0E8 SMR:G3V0E8
PRIDE:G3V0E8 Ensembl:ENST00000437231 Ensembl:ENST00000455667
ArrayExpress:G3V0E8 Bgee:G3V0E8 Uniprot:G3V0E8
Length = 318
Score = 186 (70.5 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 50/158 (31%), Positives = 92/158 (58%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER + ++ P +++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
++ ++ + + S +++ + + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 72 FAMII---DKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R + + G + + ++ I
Sbjct: 129 AQVQVAG-DMLPN---STERAITIAGIPQSIIECVKQI 162
Score = 98 (39.6 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 30/104 (28%), Positives = 49/104 (47%)
Query: 363 LPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQ-QMQIPLSYADAVIGTAG 421
+P P + HQ ++ P+ HG++ + Q T ++ IP +IG G
Sbjct: 203 IPQPDLTKLHQ-LAMQQSHFPMT-HGNTGFSAGLDASAQTTSHELTIPNDLIGCIIGRQG 260
Query: 422 ASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLI 465
A I+ IR+ SGA + I + V I+G+A+ + AQ LI
Sbjct: 261 AKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 304
Score = 81 (33.6 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 210 DSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQ 269
D+ G ++ +LL+ + GS+IGK+G +VK ++E S + + + P
Sbjct: 2 DTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP----- 55
Query: 270 DDRVVEVVGDASGVHKAMELI 290
+R++ + G + + KA +I
Sbjct: 56 -ERIITLAGPTNAIFKAFAMI 75
Score = 78 (32.5 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 389 SSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPG--E 446
SS ST + VT ++ +P S ++IG G I IR S+GA V + +P E
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNSTE 143
Query: 447 MTVEISGTA-SQVQTAQQL 464
+ I+G S ++ +Q+
Sbjct: 144 RAITIAGIPQSIIECVKQI 162
>UNIPROTKB|Q0VCU0 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162 EMBL:BC120009
IPI:IPI00707807 RefSeq:NP_001068751.1 UniGene:Bt.7587
ProteinModelPortal:Q0VCU0 SMR:Q0VCU0 PRIDE:Q0VCU0
Ensembl:ENSBTAT00000024779 GeneID:506889 KEGG:bta:506889 CTD:57060
InParanoid:Q0VCU0 OMA:MSSSDAG OrthoDB:EOG48D0VR NextBio:20867786
Uniprot:Q0VCU0
Length = 403
Score = 174 (66.3 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 57/151 (37%), Positives = 77/151 (50%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
RML+ ++VGSIIG+KGE +K+I E++ ARI I +G ER I+
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGSTA-------- 70
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVST-----KLLVPASQAGSLIGKQGGTVKSI 247
+ I LD D AP+ GG VS +L++PASQ GSLIGK G +K I
Sbjct: 71 --AVFHAVSMIAFKLDEDLCAAPAN-GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEI 127
Query: 248 QEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+E + V+V G DL +R V V G
Sbjct: 128 RETTGAQVQVAG--DL--LPNSTERAVTVSG 154
Score = 118 (46.6 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 50/175 (28%), Positives = 75/175 (42%)
Query: 350 PPRQAE-SYYPPADLPPPMEKQPHQGISA---YGREAPVNV------HGSSNAQSTPSMI 399
PP+ A Y+P L + +QG S YG P V G + ++PSM+
Sbjct: 174 PPKGATIPYHPSLSLGTVL-LSTNQGFSVQGQYGTVTPAEVTKLQQLSGHAVPFASPSMV 232
Query: 400 ------TQVT-QQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEIS 452
TQ + Q+ +P VIG G+ IS IR+ SGA + I GE V I+
Sbjct: 233 PGLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTIT 292
Query: 453 GTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYAS-MYGSPPSNPGHAG 506
G+ + AQ LI + A + S G++ P++ + P + PG G
Sbjct: 293 GSPVSIALAQYLITACLETAKSTSGGTPGSAPTDLPAPFSPPLTALPTAPPGLLG 347
Score = 79 (32.9 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 20/73 (27%), Positives = 38/73 (52%)
Query: 222 VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDAS 281
++ ++L+ + GS+IGK+G TVK I+E S+ + + P +R+ + G +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI-SEGSCP------ERITTITGSTA 70
Query: 282 GVHKAMELIGSHL 294
V A+ +I L
Sbjct: 71 AVFHAVSMIAFKL 83
Score = 39 (18.8 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 365 PPMEKQPHQGISAY-GREAPVNVHGSSNAQ 393
PP P G++AY + A N GS A+
Sbjct: 369 PPASPGPPPGLAAYTAKMAAAN--GSKKAE 396
>UNIPROTKB|B4DXP5 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K
UniGene:Hs.546271 HGNC:HGNC:8648 ChiTaRS:PCBP2 EMBL:AK302067
IPI:IPI00900327 SMR:B4DXP5 STRING:B4DXP5 Ensembl:ENST00000552819
UCSC:uc001sdf.4 Uniprot:B4DXP5
Length = 322
Score = 186 (70.5 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 50/158 (31%), Positives = 92/158 (58%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER + ++ P +++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
++ ++ + + S +++ + + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 72 FAMII---DKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R + + G + + ++ I
Sbjct: 129 AQVQVAG-DMLPN---STERAITIAGIPQSIIECVKQI 162
Score = 98 (39.6 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 30/104 (28%), Positives = 49/104 (47%)
Query: 363 LPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQ-QMQIPLSYADAVIGTAG 421
+P P + HQ ++ P+ HG++ + Q T ++ IP +IG G
Sbjct: 207 IPQPDLTKLHQ-LAMQQSHFPMT-HGNTGFSAGLDASAQTTSHELTIPNDLIGCIIGRQG 264
Query: 422 ASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLI 465
A I+ IR+ SGA + I + V I+G+A+ + AQ LI
Sbjct: 265 AKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 308
Score = 81 (33.6 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 210 DSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQ 269
D+ G ++ +LL+ + GS+IGK+G +VK ++E S + + + P
Sbjct: 2 DTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP----- 55
Query: 270 DDRVVEVVGDASGVHKAMELI 290
+R++ + G + + KA +I
Sbjct: 56 -ERIITLAGPTNAIFKAFAMI 75
Score = 79 (32.9 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 389 SSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPG--E 446
SS ST + VT ++ +P S ++IG G I IR S+GA V + +P E
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNSTE 143
Query: 447 MTVEISGTASQVQTAQQLIQNFMAEAAAPS 476
+ I+G + + I M E + S
Sbjct: 144 RAITIAGIPQSIIECVKQICVVMLETLSQS 173
>ZFIN|ZDB-GENE-050522-157 [details] [associations]
symbol:pcbp3 "poly(rC) binding protein 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-050522-157 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:BX247868 HOVERGEN:HBG053520 IPI:IPI00868273 UniGene:Dr.159961
SMR:A8WHQ1 Ensembl:ENSDART00000148317 Uniprot:A8WHQ1
Length = 350
Score = 190 (71.9 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 56/158 (35%), Positives = 92/158 (58%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER V I+ P ++ A
Sbjct: 19 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---PTDAIFKA 73
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
+ +K D ++S S++P+ + V+ +L+VPASQ GSLIGK G +K ++E++
Sbjct: 74 F--AMIAYKFEEDIINS-MSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTG 130
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R V + G + + ++ I
Sbjct: 131 AQVQVAG-DMLPN---STERAVTISGTPEAIIQCVKQI 164
Score = 96 (38.9 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQ 462
T ++ IP +IG G I+ IR+ SGA + I E + I+GT + + AQ
Sbjct: 268 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANISLAQ 327
Query: 463 QLIQNFMAEAAA 474
LI + AA
Sbjct: 328 YLINARFRDVAA 339
Score = 87 (35.7 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 21/94 (22%), Positives = 45/94 (47%)
Query: 207 LDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVF 266
++ + G ++ +LL+ + GS+IGK+G TVK ++E S + + + P
Sbjct: 1 MEPSKVQSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCP-- 57
Query: 267 ALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVD 300
+R+V + G + KA +I + +++
Sbjct: 58 ----ERIVTITGPTDAIFKAFAMIAYKFEEDIIN 87
Score = 86 (35.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 28/91 (30%), Positives = 46/91 (50%)
Query: 377 AYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVT 436
AY E + ++ SN+ +T VT ++ +P S ++IG G+ I +R S+GA V
Sbjct: 78 AYKFEEDI-INSMSNSPATSK--PPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQ 134
Query: 437 IQETRGVPG--EMTVEISGTASQV-QTAQQL 464
+ +P E V ISGT + Q +Q+
Sbjct: 135 VAGDM-LPNSTERAVTISGTPEAIIQCVKQI 164
>UNIPROTKB|E2RCH9 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03016660 Ensembl:ENSCAFT00000010991 Uniprot:E2RCH9
Length = 370
Score = 193 (73.0 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
Identities = 57/158 (36%), Positives = 92/158 (58%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER V I+ P ++ A
Sbjct: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---PTDAIFKA 103
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
+ +K D ++S S++P+ + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 104 F--AMIAYKFEEDIINS-MSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 160
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R V + G + + ++ I
Sbjct: 161 AQVQVAG-DMLPN---STERAVTISGTPDAIIQCVKQI 194
Score = 111 (44.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 30/114 (26%), Positives = 55/114 (48%)
Query: 187 SSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKS 246
S LP GLL H ++ G +S + G ++ +LL+ + GS+IGK+G TVK
Sbjct: 11 SVLPHGALGLLSHHPQLHFGRKMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKK 70
Query: 247 IQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVD 300
++E S + + + P +R+V + G + KA +I + +++
Sbjct: 71 MREESGARINI-SEGNCP------ERIVTITGPTDAIFKAFAMIAYKFEEDIIN 117
Score = 92 (37.4 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQ 462
T ++ IP +IG G I+ IR+ SGA + I E + I+GT + + AQ
Sbjct: 294 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQ 353
Query: 463 QLI 465
LI
Sbjct: 354 YLI 356
Score = 89 (36.4 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 377 AYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVT 436
AY E + ++ SN+ +T VT ++ +P S ++IG G+ I IR S+GA V
Sbjct: 108 AYKFEEDI-INSMSNSPATSK--PPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQ 164
Query: 437 IQETRGVPG--EMTVEISGTASQV-QTAQQL 464
+ +P E V ISGT + Q +Q+
Sbjct: 165 VAGDM-LPNSTERAVTISGTPDAIIQCVKQI 194
>MGI|MGI:1890471 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006977 "DNA damage response, signal transduction by p53 class
mediator resulting in cell cycle arrest" evidence=ISO] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890471 GO:GO:0005737 GO:GO:0003677
GO:GO:0003723 GO:GO:0030529 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162
CTD:57060 OrthoDB:EOG48D0VR EMBL:AF176328 EMBL:BC010694
IPI:IPI00118718 RefSeq:NP_067542.3 UniGene:Mm.286394
ProteinModelPortal:P57724 SMR:P57724 STRING:P57724
PhosphoSite:P57724 PaxDb:P57724 PRIDE:P57724
Ensembl:ENSMUST00000024260 GeneID:59092 KEGG:mmu:59092
InParanoid:P57724 NextBio:314742 Bgee:P57724 CleanEx:MM_PCBP4
Genevestigator:P57724 GermOnline:ENSMUSG00000023495 Uniprot:P57724
Length = 403
Score = 174 (66.3 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 57/151 (37%), Positives = 77/151 (50%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
RML+ ++VGSIIG+KGE +K+I E++ ARI I +G ER I+
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGSTA-------- 70
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVST-----KLLVPASQAGSLIGKQGGTVKSI 247
+ I LD D AP+ GG VS +L++PASQ GSLIGK G +K I
Sbjct: 71 --AVFHAVSMIAFKLDEDLCAAPAN-GGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEI 127
Query: 248 QEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+E + V+V G DL +R V V G
Sbjct: 128 RETTGAQVQVAG--DL--LPNSTERAVTVSG 154
Score = 115 (45.5 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 49/175 (28%), Positives = 75/175 (42%)
Query: 350 PPRQAE-SYYPPADLPPPMEKQPHQGISA---YGREAPVNV------HGSSNAQSTPSMI 399
PP+ A Y+P L + +QG S YG P V G + ++PS++
Sbjct: 174 PPKGATIPYHPSLSLGTVL-LSANQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVV 232
Query: 400 ------TQVT-QQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEIS 452
TQ + Q+ +P VIG G+ IS IR+ SGA + I GE V I+
Sbjct: 233 PGMDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTIT 292
Query: 453 GTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYAS-MYGSPPSNPGHAG 506
G+ + AQ LI + A + S G++ P++ + P + PG G
Sbjct: 293 GSPVSIALAQYLITACLETAKSTSGGTPGSAPADLPTPFSPPLTALPTAPPGLLG 347
Score = 79 (32.9 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 20/73 (27%), Positives = 38/73 (52%)
Query: 222 VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDAS 281
++ ++L+ + GS+IGK+G TVK I+E S+ + + P +R+ + G +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI-SEGSCP------ERITTITGSTA 70
Query: 282 GVHKAMELIGSHL 294
V A+ +I L
Sbjct: 71 AVFHAVSMIAFKL 83
Score = 39 (18.8 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 365 PPMEKQPHQGISAY-GREAPVNVHGSSNAQ 393
PP P G++AY + A N GS A+
Sbjct: 369 PPASPGPPPGLAAYTAKMAAAN--GSKKAE 396
>RGD|1307910 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0006977
"DNA damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=ISO] [GO:0007050 "cell
cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307910 GO:GO:0003723
GeneTree:ENSGT00550000074311 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR IPI:IPI00366708 RefSeq:NP_001178812.1
UniGene:Rn.40405 Ensembl:ENSRNOT00000017139 GeneID:363133
KEGG:rno:363133 UCSC:RGD:1307910 NextBio:682555 Uniprot:D3ZCS3
Length = 403
Score = 174 (66.3 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 57/151 (37%), Positives = 77/151 (50%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
RML+ ++VGSIIG+KGE +K+I E++ ARI I +G ER I+
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGSTA-------- 70
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVST-----KLLVPASQAGSLIGKQGGTVKSI 247
+ I LD D AP+ GG VS +L++PASQ GSLIGK G +K I
Sbjct: 71 --AVFHAVSMIAFKLDEDLCAAPAN-GGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEI 127
Query: 248 QEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+E + V+V G DL +R V V G
Sbjct: 128 RETTGAQVQVAG--DL--LPNSTERAVTVSG 154
Score = 115 (45.5 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 49/175 (28%), Positives = 75/175 (42%)
Query: 350 PPRQAE-SYYPPADLPPPMEKQPHQGISA---YGREAPVNV------HGSSNAQSTPSMI 399
PP+ A Y+P L + +QG S YG P V G + ++PS++
Sbjct: 174 PPKGATIPYHPSLSLGTVL-LSANQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVV 232
Query: 400 ------TQVT-QQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEIS 452
TQ + Q+ +P VIG G+ IS IR+ SGA + I GE V I+
Sbjct: 233 PGLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTIT 292
Query: 453 GTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYAS-MYGSPPSNPGHAG 506
G+ + AQ LI + A + S G++ P++ + P + PG G
Sbjct: 293 GSPVSIALAQYLITACLETAKSTSGGTPGSAPADLPTPFSPPLTALPTAPPGLLG 347
Score = 79 (32.9 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 20/73 (27%), Positives = 38/73 (52%)
Query: 222 VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDAS 281
++ ++L+ + GS+IGK+G TVK I+E S+ + + P +R+ + G +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI-SEGSCP------ERITTITGSTA 70
Query: 282 GVHKAMELIGSHL 294
V A+ +I L
Sbjct: 71 AVFHAVSMIAFKL 83
Score = 39 (18.8 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 365 PPMEKQPHQGISAY-GREAPVNVHGSSNAQ 393
PP P G++AY + A N GS A+
Sbjct: 369 PPASPGPPPGLAAYTAKMAAAN--GSKKAE 396
>UNIPROTKB|E2RG64 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 KO:K13162
CTD:57060 OMA:MSSSDAG EMBL:AAEX03012201 RefSeq:XP_849987.1
Ensembl:ENSCAFT00000015946 GeneID:476603 KEGG:cfa:476603
NextBio:20852230 Uniprot:E2RG64
Length = 403
Score = 174 (66.3 bits), Expect = 9.9e-18, Sum P(2) = 9.9e-18
Identities = 57/151 (37%), Positives = 77/151 (50%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
RML+ ++VGSIIG+KGE +K+I E++ ARI I +G ER I+
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGSTA-------- 70
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVST-----KLLVPASQAGSLIGKQGGTVKSI 247
+ I LD D AP+ GG VS +L++PASQ GSLIGK G +K I
Sbjct: 71 --AVFHAVSMIAFKLDEDLCAAPAN-GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEI 127
Query: 248 QEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+E + V+V G DL +R V V G
Sbjct: 128 RETTGAQVQVAG--DL--LPNSTERAVTVSG 154
Score = 113 (44.8 bits), Expect = 9.9e-18, Sum P(2) = 9.9e-18
Identities = 48/175 (27%), Positives = 74/175 (42%)
Query: 350 PPRQAE-SYYPPADLPPPMEKQPHQGISA---YGREAPVNV------HGSSNAQSTPSMI 399
PP+ A Y+P L + +QG S YG P V G + ++PSM+
Sbjct: 174 PPKGATIPYHPSLSLGTVL-LSANQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSMV 232
Query: 400 TQV-------TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEIS 452
+ +Q+ +P VIG G+ IS IR+ SGA + I GE V I+
Sbjct: 233 PGLDPGAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTIT 292
Query: 453 GTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYAS-MYGSPPSNPGHAG 506
G+ + AQ LI + A + S G++ P++ + P + PG G
Sbjct: 293 GSPVSIALAQYLITACLETAKSTSGGTPGSAPTDLPAPFSPPLTALPTAPPGLLG 347
Score = 79 (32.9 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 20/73 (27%), Positives = 38/73 (52%)
Query: 222 VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDAS 281
++ ++L+ + GS+IGK+G TVK I+E S+ + + P +R+ + G +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI-SEGSCP------ERITTITGSTA 70
Query: 282 GVHKAMELIGSHL 294
V A+ +I L
Sbjct: 71 AVFHAVSMIAFKL 83
Score = 39 (18.8 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 365 PPMEKQPHQGISAY-GREAPVNVHGSSNAQ 393
PP P G++AY + A N GS A+
Sbjct: 369 PPASPGPPPGLAAYTAKMAAAN--GSKKAE 396
>UNIPROTKB|P57723 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR EMBL:AF176330 EMBL:AK023993 EMBL:BC003008
EMBL:BC004153 EMBL:BC017098 IPI:IPI00027973 IPI:IPI00386254
RefSeq:NP_001167571.1 RefSeq:NP_065151.2 RefSeq:NP_127501.1
RefSeq:NP_127503.1 UniGene:Hs.20930 ProteinModelPortal:P57723
SMR:P57723 IntAct:P57723 MINT:MINT-2873350 STRING:P57723
PhosphoSite:P57723 DMDM:12230429 PRIDE:P57723
Ensembl:ENST00000322099 Ensembl:ENST00000355852
Ensembl:ENST00000428823 Ensembl:ENST00000461554
Ensembl:ENST00000484633 GeneID:57060 KEGG:hsa:57060 UCSC:uc003dce.2
UCSC:uc003dck.2 GeneCards:GC03M051991 HGNC:HGNC:8652 MIM:608503
neXtProt:NX_P57723 PharmGKB:PA32991 GenomeRNAi:57060 NextBio:62848
ArrayExpress:P57723 Bgee:P57723 CleanEx:HS_PCBP4
Genevestigator:P57723 GermOnline:ENSG00000090097 Uniprot:P57723
Length = 403
Score = 174 (66.3 bits), Expect = 9.9e-18, Sum P(2) = 9.9e-18
Identities = 57/151 (37%), Positives = 77/151 (50%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
RML+ ++VGSIIG+KGE +K+I E++ ARI I +G ER I+
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGSTA-------- 70
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVST-----KLLVPASQAGSLIGKQGGTVKSI 247
+ I LD D AP+ GG VS +L++PASQ GSLIGK G +K I
Sbjct: 71 --AVFHAVSMIAFKLDEDLCAAPAN-GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEI 127
Query: 248 QEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+E + V+V G DL +R V V G
Sbjct: 128 RETTGAQVQVAG--DL--LPNSTERAVTVSG 154
Score = 113 (44.8 bits), Expect = 9.9e-18, Sum P(2) = 9.9e-18
Identities = 51/175 (29%), Positives = 76/175 (43%)
Query: 350 PPRQAE-SYYPPADLPPPMEKQPHQGISA---YGREAPVNVHG----SSNAQ--STPSMI 399
PP+ A Y+P L + +QG S YG P V SS+A +TPS++
Sbjct: 174 PPKGATIPYHPSLSLGTVL-LSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVV 232
Query: 400 ------TQVT-QQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEIS 452
TQ + Q+ +P VIG G+ IS IR+ SGA + I GE V I+
Sbjct: 233 PGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTIT 292
Query: 453 GTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYAS-MYGSPPSNPGHAG 506
G+ + AQ LI + A + S ++ P++ + P + PG G
Sbjct: 293 GSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLG 347
Score = 79 (32.9 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 20/73 (27%), Positives = 38/73 (52%)
Query: 222 VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDAS 281
++ ++L+ + GS+IGK+G TVK I+E S+ + + P +R+ + G +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI-SEGSCP------ERITTITGSTA 70
Query: 282 GVHKAMELIGSHL 294
V A+ +I L
Sbjct: 71 AVFHAVSMIAFKL 83
Score = 39 (18.8 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 365 PPMEKQPHQGISAY-GREAPVNVHGSSNAQ 393
PP P G++AY + A N GS A+
Sbjct: 369 PPASPGPPPGLAAYTAKMAAAN--GSKKAE 396
>RGD|621345 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0005634 GO:GO:0007399 GO:GO:0003723
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048
EMBL:AY262017 IPI:IPI00331877 UniGene:Rn.232418
ProteinModelPortal:Q80WA4 SMR:Q80WA4 PRIDE:Q80WA4 UCSC:RGD:621345
ArrayExpress:Q80WA4 Genevestigator:Q80WA4 Uniprot:Q80WA4
Length = 474
Score = 213 (80.0 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 71/204 (34%), Positives = 106/204 (51%)
Query: 93 VPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFI 152
VP D+ P DS+ K+ E GST++ G G+ ++L+P+ GSIIG+ G+ I
Sbjct: 15 VPIDLDPPDSR---KRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTI 71
Query: 153 KKIVEETRARIKIL---DGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDGLDS 209
++ +ET A IK+ D PGTTER +I E +++ + +R + V +
Sbjct: 72 VQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNVAKTEP 131
Query: 210 DSSHAPSGTGG--KVS-TKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVF 266
S P T ++ K++VP S AG +IGK G TVK+I E S V++ D
Sbjct: 132 VSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPD--GI 189
Query: 267 ALQDDRVVEVVGDASGVHKAMELI 290
LQ+ RVV V G+ KA+ELI
Sbjct: 190 NLQE-RVVTVSGEPEQNRKAVELI 212
Score = 72 (30.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG--VPGEMT--VEISGTASQVQT 460
++ +P + A++G G ++ + +GA + I + +G VPG V I+GT + Q
Sbjct: 400 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISK-KGEFVPGTRNRKVTITGTPAATQA 458
Query: 461 AQQLI 465
AQ LI
Sbjct: 459 AQYLI 463
>UNIPROTKB|F1LMZ7 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003723 IPI:IPI00331877
Ensembl:ENSRNOT00000044527 ArrayExpress:F1LMZ7 Uniprot:F1LMZ7
Length = 474
Score = 213 (80.0 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 71/204 (34%), Positives = 106/204 (51%)
Query: 93 VPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFI 152
VP D+ P DS+ K+ E GST++ G G+ ++L+P+ GSIIG+ G+ I
Sbjct: 15 VPIDLDPPDSR---KRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTI 71
Query: 153 KKIVEETRARIKIL---DGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDGLDS 209
++ +ET A IK+ D PGTTER +I E +++ + +R + V +
Sbjct: 72 VQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNVAKTEP 131
Query: 210 DSSHAPSGTGG--KVS-TKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVF 266
S P T ++ K++VP S AG +IGK G TVK+I E S V++ D
Sbjct: 132 VSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPD--GI 189
Query: 267 ALQDDRVVEVVGDASGVHKAMELI 290
LQ+ RVV V G+ KA+ELI
Sbjct: 190 NLQE-RVVTVSGEPEQNRKAVELI 212
Score = 72 (30.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG--VPGEMT--VEISGTASQVQT 460
++ +P + A++G G ++ + +GA + I + +G VPG V I+GT + Q
Sbjct: 400 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISK-KGEFVPGTRNRKVTITGTPAATQA 458
Query: 461 AQQLI 465
AQ LI
Sbjct: 459 AQYLI 463
>UNIPROTKB|D3DS81 [details] [associations]
symbol:NOVA1 "Neuro-oncological ventral antigen 1, isoform
CRA_a" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:CH471078
RefSeq:NP_006480.2 UniGene:Hs.31588 GeneID:4857 KEGG:hsa:4857
CTD:4857 HGNC:HGNC:7886 HOGENOM:HOG000007833 KO:K14944
ChiTaRS:NOVA1 GenomeRNAi:4857 NextBio:18710 EMBL:AL079343
EMBL:AL132716 IPI:IPI00956017 SMR:D3DS81 Ensembl:ENST00000465357
UCSC:uc001wpz.3 Uniprot:D3DS81
Length = 483
Score = 213 (80.0 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 70/204 (34%), Positives = 106/204 (51%)
Query: 93 VPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFI 152
VP D+ P DS+ K+ E GST++ G G+ ++L+P+ GSIIG+ G+ I
Sbjct: 16 VPIDLDPPDSR---KRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTI 72
Query: 153 KKIVEETRARIKIL---DGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDGLDS 209
++ +ET A IK+ D PGTTER +I E +++ + +R + V +
Sbjct: 73 VQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAKTEP 132
Query: 210 DSSHAPSGTGG--KVS-TKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVF 266
S P T ++ K++VP S AG +IGK G TVK++ E S V++ D
Sbjct: 133 VSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPD--GI 190
Query: 267 ALQDDRVVEVVGDASGVHKAMELI 290
LQ+ RVV V G+ KA+ELI
Sbjct: 191 NLQE-RVVTVSGEPEQNRKAVELI 213
Score = 72 (30.4 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG--VPGEMT--VEISGTASQVQT 460
++ +P + A++G G ++ + +GA + I + +G VPG V I+GT + Q
Sbjct: 401 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISK-KGEFVPGTRNRKVTITGTPAATQA 459
Query: 461 AQQLI 465
AQ LI
Sbjct: 460 AQYLI 464
>UNIPROTKB|J9P8W8 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03014817 Ensembl:ENSCAFT00000021540 OMA:QTSSHEM
Uniprot:J9P8W8
Length = 315
Score = 177 (67.4 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 49/158 (31%), Positives = 91/158 (57%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ A I I +G ER + ++ P +++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGAGINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
++ ++ + + S +++ + + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 72 FAMII---DKLEEVISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R + + G + + ++ I
Sbjct: 129 AQVQVAG-DMLPN---STERAITIAGIPQSIIECVKQI 162
Score = 100 (40.3 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 30/104 (28%), Positives = 49/104 (47%)
Query: 363 LPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQ-QMQIPLSYADAVIGTAG 421
+P P + HQ ++ P+ HG++ + Q T ++ IP +IG G
Sbjct: 200 IPQPDLTKLHQ-LAMQQSHFPMT-HGNTGFSGSLDASAQTTSHELTIPNDLIGCIIGRQG 257
Query: 422 ASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLI 465
A I+ IR+ SGA + I + V I+G+A+ + AQ LI
Sbjct: 258 AKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 301
Score = 81 (33.6 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 21/89 (23%), Positives = 44/89 (49%)
Query: 210 DSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQ 269
D+ G ++ +LL+ + GS+IGK+G +VK ++E S + + + P
Sbjct: 2 DTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGAGINI-SEGNCP----- 55
Query: 270 DDRVVEVVGDASGVHKAMELIGSHLRKFL 298
+R++ + G + + KA +I L + +
Sbjct: 56 -ERIITLAGPTNAIFKAFAMIIDKLEEVI 83
Score = 79 (32.9 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 25/82 (30%), Positives = 40/82 (48%)
Query: 386 VHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPG 445
V SS ST + VT ++ +P S ++IG G I IR S+GA V + +P
Sbjct: 82 VISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPN 140
Query: 446 --EMTVEISGTA-SQVQTAQQL 464
E + I+G S ++ +Q+
Sbjct: 141 STERAITIAGIPQSIIECVKQI 162
>UNIPROTKB|Q15366 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0016071 "mRNA metabolic process"
evidence=NAS] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IPI] [GO:0050687 "negative regulation of defense response
to virus" evidence=IMP] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0032480 "negative
regulation of type I interferon production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 Reactome:REACT_6900 GO:GO:0005654 GO:GO:0043161
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0045087 EMBL:CH471054
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 EMBL:AC068889
GO:GO:0000398 EMBL:AC023509 GO:GO:0032480 GO:GO:0050687
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
EMBL:X78136 EMBL:AB188306 EMBL:AK292141 EMBL:AB208825 EMBL:BC001155
EMBL:BC071942 EMBL:BC107688 IPI:IPI00012066 IPI:IPI00216689
IPI:IPI00470509 IPI:IPI00791223 IPI:IPI00796337 PIR:S65679
RefSeq:NP_001092090.1 RefSeq:NP_001122383.1 RefSeq:NP_001122384.1
RefSeq:NP_001122385.1 RefSeq:NP_001122386.1 RefSeq:NP_005007.2
RefSeq:NP_114366.1 UniGene:Hs.546271 PDB:2AXY PDB:2JZX PDB:2P2R
PDB:2PQU PDB:2PY9 PDBsum:2AXY PDBsum:2JZX PDBsum:2P2R PDBsum:2PQU
PDBsum:2PY9 ProteinModelPortal:Q15366 SMR:Q15366 DIP:DIP-58934N
IntAct:Q15366 MINT:MINT-96192 STRING:Q15366 PhosphoSite:Q15366
DMDM:6707736 PaxDb:Q15366 PeptideAtlas:Q15366 PRIDE:Q15366
DNASU:5094 Ensembl:ENST00000359282 Ensembl:ENST00000359462
Ensembl:ENST00000439930 Ensembl:ENST00000447282
Ensembl:ENST00000546463 Ensembl:ENST00000548933
Ensembl:ENST00000552296 GeneID:5094 KEGG:hsa:5094 UCSC:uc001sdl.4
CTD:5094 GeneCards:GC12P053844 HGNC:HGNC:8648 HPA:HPA038356
MIM:601210 neXtProt:NX_Q15366 PharmGKB:PA32987 InParanoid:Q15366
KO:K13162 OMA:CVVMLEL ChiTaRS:PCBP2 EvolutionaryTrace:Q15366
GenomeRNAi:5094 NextBio:19648 ArrayExpress:Q15366 Bgee:Q15366
CleanEx:HS_PCBP2 Genevestigator:Q15366 GermOnline:ENSG00000197111
Uniprot:Q15366
Length = 365
Score = 234 (87.4 bits), Expect = 2.3e-17, P = 2.3e-17
Identities = 91/351 (25%), Positives = 158/351 (45%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER + ++ P +++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
++ ++ + + S +++ + + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 72 FAMII---DKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVDRSIIPLFEMHMQ 312
V+V G + LP +R + + G + + ++ I + + L P
Sbjct: 129 AQVQVAG-DMLPN---STERAITIAGIPQSIIECVKQICVVMLETLSQSP--PKGVTIPY 182
Query: 313 MPNPQMDHIXXXXXXXXXXXXXXXXXXXXXH-----NPQYMPPPRQAESYYPPADLPPPM 367
P P + NP PP +A + +P P
Sbjct: 183 RPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPD 242
Query: 368 EKQPHQGISAYGREAPVNVHGSSN----AQSTPSM--------ITQVTQ-QMQIPLSYAD 414
+ HQ ++ P+ HG++ S+P + Q T ++ IP
Sbjct: 243 LTKLHQ-LAMQQSHFPMT-HGNTGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIG 300
Query: 415 AVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLI 465
+IG GA I+ IR+ SGA + I + V I+G+A+ + AQ LI
Sbjct: 301 CIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 351
>RGD|1309626 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0031625 "ubiquitin
protein ligase binding" evidence=ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0050687 "negative regulation of defense response to virus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1309626 GO:GO:0003723 eggNOG:NOG315872
HOVERGEN:HBG053520 CTD:5094 KO:K13162 IPI:IPI00464805 EMBL:BC078906
RefSeq:NP_001013241.1 UniGene:Rn.106644 ProteinModelPortal:Q6AYU5
SMR:Q6AYU5 PRIDE:Q6AYU5 GeneID:363005 KEGG:rno:363005
UCSC:RGD:1309626 NextBio:682109 Genevestigator:Q6AYU5
Uniprot:Q6AYU5
Length = 365
Score = 234 (87.4 bits), Expect = 2.3e-17, P = 2.3e-17
Identities = 91/351 (25%), Positives = 158/351 (45%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER + ++ P +++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
++ ++ + + S +++ + + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 72 FAMII---DKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVDRSIIPLFEMHMQ 312
V+V G + LP +R + + G + + ++ I + + L P
Sbjct: 129 AQVQVAG-DMLPN---STERAITIAGIPQSIIECVKQICVVMLETLSQSP--PKGVTIPY 182
Query: 313 MPNPQMDHIXXXXXXXXXXXXXXXXXXXXXH-----NPQYMPPPRQAESYYPPADLPPPM 367
P P + NP PP +A + +P P
Sbjct: 183 RPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPD 242
Query: 368 EKQPHQGISAYGREAPVNVHGSSN----AQSTPSM--------ITQVTQ-QMQIPLSYAD 414
+ HQ ++ P+ HG++ S+P + Q T ++ IP
Sbjct: 243 LTKLHQ-LAMQQSHFPMT-HGNTGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIG 300
Query: 415 AVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLI 465
+IG GA I+ IR+ SGA + I + V I+G+A+ + AQ LI
Sbjct: 301 CIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 351
>ZFIN|ZDB-GENE-070424-78 [details] [associations]
symbol:zgc:162999 "zgc:162999" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
Pfam:PF13014 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-070424-78
GO:GO:0003723 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 EMBL:BC135088 IPI:IPI00845944
RefSeq:NP_001083021.1 UniGene:Dr.122660 ProteinModelPortal:A4IGG5
SMR:A4IGG5 PRIDE:A4IGG5 GeneID:100038772 KEGG:dre:100038772
NextBio:20788560 Bgee:A4IGG5 Uniprot:A4IGG5
Length = 350
Score = 182 (69.1 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 54/158 (34%), Positives = 91/158 (57%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI + +G ER V I+ P ++ A
Sbjct: 19 RLLMHGKEVGSIIGKKGETVKKMREESSARINVSEG--NCPERIVTITG---PTDAIFKA 73
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
+ +K D ++S S++ + + V+ +L+VPASQ GSLIGK G +K ++E++
Sbjct: 74 F--AMIAYKFEEDIINS-MSNSQATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTG 130
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R V + G + + ++ I
Sbjct: 131 AQVQVAG-DMLPN---STERAVTISGTPEAIIQCVKQI 164
Score = 97 (39.2 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 30/110 (27%), Positives = 49/110 (44%)
Query: 371 PHQGISAYGREAPVNVHGSSNAQSTPSM-----ITQV-TQQMQIPLSYADAVIGTAGASI 424
PH ++ + A +S Q+TP+ +Q T ++ IP +IG G I
Sbjct: 230 PHPDLTKLHQLAMQQTPFTSLGQTTPAFPGVDASSQASTHELTIPNDLIGCIIGRQGTKI 289
Query: 425 SYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAA 474
+ IR+ SGA + I + + I+GT + + AQ LI + AA
Sbjct: 290 NEIRQMSGAQIKIANAMEGSSDRQITITGTPANISLAQYLINARFRDVAA 339
Score = 92 (37.4 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 29/91 (31%), Positives = 47/91 (51%)
Query: 377 AYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVT 436
AY E + ++ SN+Q+T VT ++ +P S ++IG G+ I +R S+GA V
Sbjct: 78 AYKFEEDI-INSMSNSQATSK--PPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQ 134
Query: 437 IQETRGVPG--EMTVEISGTASQV-QTAQQL 464
+ +P E V ISGT + Q +Q+
Sbjct: 135 VAGDM-LPNSTERAVTISGTPEAIIQCVKQI 164
Score = 88 (36.0 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 217 GTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEV 276
G ++ +LL+ + GS+IGK+G TVK ++E S+ + V + P +R+V +
Sbjct: 11 GLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESSARINV-SEGNCP------ERIVTI 63
Query: 277 VGDASGVHKAMELIGSHLRKFLVD 300
G + KA +I + +++
Sbjct: 64 TGPTDAIFKAFAMIAYKFEEDIIN 87
>UNIPROTKB|F8VZX2 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021216
ProteinModelPortal:F8VZX2 SMR:F8VZX2 Ensembl:ENST00000549863
ArrayExpress:F8VZX2 Bgee:F8VZX2 Uniprot:F8VZX2
Length = 321
Score = 186 (70.5 bits), Expect = 5.3e-17, Sum P(2) = 5.3e-17
Identities = 50/158 (31%), Positives = 92/158 (58%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER + ++ P +++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
++ ++ + + S +++ + + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 72 FAMII---DKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R + + G + + ++ I
Sbjct: 129 AQVQVAG-DMLPN---STERAITIAGIPQSIIECVKQI 162
Score = 86 (35.3 bits), Expect = 5.3e-17, Sum P(2) = 5.3e-17
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQ 462
+ ++ IP +IG GA I+ IR+ SGA + I + V I+G+A+ + AQ
Sbjct: 245 SHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQ 304
Query: 463 QLI 465
LI
Sbjct: 305 YLI 307
Score = 81 (33.6 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 210 DSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQ 269
D+ G ++ +LL+ + GS+IGK+G +VK ++E S + + + P
Sbjct: 2 DTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP----- 55
Query: 270 DDRVVEVVGDASGVHKAMELI 290
+R++ + G + + KA +I
Sbjct: 56 -ERIITLAGPTNAIFKAFAMI 75
Score = 79 (32.9 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 389 SSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPG--E 446
SS ST + VT ++ +P S ++IG G I IR S+GA V + +P E
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNSTE 143
Query: 447 MTVEISGTASQVQTAQQLIQNFMAEAAAPS 476
+ I+G + + I M E + S
Sbjct: 144 RAITIAGIPQSIIECVKQICVVMLETLSQS 173
>ZFIN|ZDB-GENE-030131-563 [details] [associations]
symbol:pcbp2 "poly(rC) binding protein 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-030131-563 GO:GO:0003723 GeneTree:ENSGT00550000074311
HOGENOM:HOG000182823 HOVERGEN:HBG053520 CTD:5094 KO:K13162
OMA:CVVMLEL HSSP:Q9UNW9 EMBL:CR848672 EMBL:BC045508 EMBL:BC066603
EMBL:AY398394 IPI:IPI00495300 RefSeq:NP_957486.1 UniGene:Dr.76907
SMR:Q7ZVK5 Ensembl:ENSDART00000025885 GeneID:321844 KEGG:dre:321844
InParanoid:Q7ZVK5 NextBio:20807553 Uniprot:Q7ZVK5
Length = 318
Score = 189 (71.6 bits), Expect = 6.6e-17, Sum P(2) = 6.6e-17
Identities = 50/158 (31%), Positives = 93/158 (58%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER + ++ P +++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTTAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
++ +++ + + S S++ + + V+ +++VPASQ GSLIGK G +K I+E++
Sbjct: 72 FSMII---EKLEEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R + + G + + ++ I
Sbjct: 129 AQVQVAG-DMLPN---STERAITIAGTPLSIIECVKQI 162
Score = 85 (35.0 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 210 DSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQ 269
DS G ++ +LL+ + GS+IGK+G +VK ++E S + + + P
Sbjct: 2 DSGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP----- 55
Query: 270 DDRVVEVVGDASGVHKAMELI 290
+R++ + G + + KA +I
Sbjct: 56 -ERIITLAGPTTAIFKAFSMI 75
Score = 84 (34.6 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 389 SSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPG--E 446
SS + ST + VT ++ +P S ++IG G I IR S+GA V + +P E
Sbjct: 85 SSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNSTE 143
Query: 447 MTVEISGTA-SQVQTAQQL 464
+ I+GT S ++ +Q+
Sbjct: 144 RAITIAGTPLSIIECVKQI 162
Score = 81 (33.6 bits), Expect = 6.6e-17, Sum P(2) = 6.6e-17
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQ 462
+ ++ IP +IG GA I+ IR+ SGA + I + V I+G+ + + A+
Sbjct: 242 SHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSSDRQVTITGSPASISLAE 301
Query: 463 QLIQNFMAEAA 473
LI ++ A
Sbjct: 302 YLINARLSSEA 312
>MGI|MGI:108202 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=IEA] [GO:0050687 "negative regulation of defense response
to virus" evidence=ISO] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:108202 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0003677 GO:GO:0045087
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 GO:GO:0050687
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094 KO:K13162 OMA:CVVMLEL
ChiTaRS:PCBP2 EMBL:L19661 EMBL:X75947 EMBL:X97982 EMBL:AF236845
EMBL:AF236842 EMBL:AF236843 EMBL:AF236844 IPI:IPI00127707
IPI:IPI00221796 IPI:IPI00221799 PIR:S78515 RefSeq:NP_001096635.1
RefSeq:NP_001096636.1 RefSeq:NP_035172.2 UniGene:Mm.236513
ProteinModelPortal:Q61990 SMR:Q61990 IntAct:Q61990 STRING:Q61990
PhosphoSite:Q61990 REPRODUCTION-2DPAGE:Q61990 PaxDb:Q61990
PRIDE:Q61990 Ensembl:ENSMUST00000077037 Ensembl:ENSMUST00000078404
Ensembl:ENSMUST00000108838 GeneID:18521 KEGG:mmu:18521
UCSC:uc007xvy.2 UCSC:uc007xvz.2 UCSC:uc009vat.1 InParanoid:Q61990
NextBio:294276 Bgee:Q61990 CleanEx:MM_PCBP2 Genevestigator:Q61990
GermOnline:ENSMUSG00000056851 Uniprot:Q61990
Length = 362
Score = 230 (86.0 bits), Expect = 6.8e-17, P = 6.8e-17
Identities = 91/352 (25%), Positives = 158/352 (44%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER + ++ P +++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
++ ++ + + S +++ + + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 72 FAMII---DKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVDRSIIPLFEMHMQ 312
V+V G + LP +R + + G + + ++ I + + IP
Sbjct: 129 AQVQVAG-DMLPN---STERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPY------ 178
Query: 313 MPNPQMDHIXXXXXXXXXXXXXXXXXXXXXH-----NPQYMPPPRQAESYYPPADLPPPM 367
P P + NP PP +A + +P P
Sbjct: 179 RPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPD 238
Query: 368 EKQPHQGISAYGREAPVNVHGSSN----AQSTPSM---------ITQVTQ-QMQIPLSYA 413
+ HQ ++ P+ HG++ S+P + Q T ++ IP
Sbjct: 239 LTKLHQ-LAMQQSHFPMT-HGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLI 296
Query: 414 DAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLI 465
+IG GA I+ IR+ SGA + I + V I+G+A+ + AQ LI
Sbjct: 297 GCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 348
>UNIPROTKB|E2RCF9 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:AAEX03014980 RefSeq:XP_857995.1
ProteinModelPortal:E2RCF9 Ensembl:ENSCAFT00000010996 GeneID:477596
KEGG:cfa:477596 Uniprot:E2RCF9
Length = 331
Score = 186 (70.5 bits), Expect = 6.9e-17, Sum P(2) = 6.9e-17
Identities = 50/158 (31%), Positives = 92/158 (58%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER + ++ P +++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
++ ++ + + S +++ + + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 72 FAMII---DKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R + + G + + ++ I
Sbjct: 129 AQVQVAG-DMLPN---STERAITIAGIPQSIIECVKQI 162
Score = 86 (35.3 bits), Expect = 6.9e-17, Sum P(2) = 6.9e-17
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQ 462
+ ++ IP +IG GA I+ IR+ SGA + I + V I+G+A+ + AQ
Sbjct: 255 SHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQ 314
Query: 463 QLI 465
LI
Sbjct: 315 YLI 317
Score = 81 (33.6 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 210 DSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQ 269
D+ G ++ +LL+ + GS+IGK+G +VK ++E S + + + P
Sbjct: 2 DTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP----- 55
Query: 270 DDRVVEVVGDASGVHKAMELI 290
+R++ + G + + KA +I
Sbjct: 56 -ERIITLAGPTNAIFKAFAMI 75
Score = 78 (32.5 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 389 SSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPG--E 446
SS ST + VT ++ +P S ++IG G I IR S+GA V + +P E
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNSTE 143
Query: 447 MTVEISGTA-SQVQTAQQL 464
+ I+G S ++ +Q+
Sbjct: 144 RAITIAGIPQSIIECVKQI 162
>UNIPROTKB|F1NPL2 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00812713 Ensembl:ENSGALT00000021485 ArrayExpress:F1NPL2
Uniprot:F1NPL2
Length = 319
Score = 183 (69.5 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 52/158 (32%), Positives = 89/158 (56%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER V I+ P ++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTITG---PTDAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
+ + + +++ +++ + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 72 FS---MIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R V + G + + ++ I
Sbjct: 129 AQVQVAG-DMLPN---STERAVTISGTPDAIIQCVKQI 162
Score = 92 (37.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 210 DSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQ 269
DS + G ++ +LL+ + GS+IGK+G TVK ++E S + + P
Sbjct: 2 DSKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGSCP----- 55
Query: 270 DDRVVEVVGDASGVHKAMELI 290
+R+V + G + KA +I
Sbjct: 56 -ERIVTITGPTDAIFKAFSMI 75
Score = 91 (37.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 391 NAQSTPSMITQ---VTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPG-- 445
NA T S +T VT ++ +P S ++IG G+ I IR S+GA V + +P
Sbjct: 84 NASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPNST 142
Query: 446 EMTVEISGTASQV-QTAQQL 464
E V ISGT + Q +Q+
Sbjct: 143 ERAVTISGTPDAIIQCVKQI 162
Score = 86 (35.3 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQ 462
+ ++ IP +IG G+ I+ IR+ SGA + I E V I+G+ + + AQ
Sbjct: 243 SHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSPANISLAQ 302
Query: 463 QLI 465
LI
Sbjct: 303 YLI 305
>UNIPROTKB|F1NPL4 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00571530 Ensembl:ENSGALT00000021482 ArrayExpress:F1NPL4
Uniprot:F1NPL4
Length = 326
Score = 183 (69.5 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 52/158 (32%), Positives = 89/158 (56%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER V I+ P ++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTITG---PTDAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
+ + + +++ +++ + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 72 FS---MIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R V + G + + ++ I
Sbjct: 129 AQVQVAG-DMLPN---STERAVTISGTPDAIIQCVKQI 162
Score = 92 (37.4 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 210 DSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQ 269
DS + G ++ +LL+ + GS+IGK+G TVK ++E S + + P
Sbjct: 2 DSKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGSCP----- 55
Query: 270 DDRVVEVVGDASGVHKAMELI 290
+R+V + G + KA +I
Sbjct: 56 -ERIVTITGPTDAIFKAFSMI 75
Score = 91 (37.1 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 391 NAQSTPSMITQ---VTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPG-- 445
NA T S +T VT ++ +P S ++IG G+ I IR S+GA V + +P
Sbjct: 84 NASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPNST 142
Query: 446 EMTVEISGTASQV-QTAQQL 464
E V ISGT + Q +Q+
Sbjct: 143 ERAVTISGTPDAIIQCVKQI 162
Score = 86 (35.3 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQ 462
+ ++ IP +IG G+ I+ IR+ SGA + I E V I+G+ + + AQ
Sbjct: 246 SHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSPANISLAQ 305
Query: 463 QLI 465
LI
Sbjct: 306 YLI 308
>UNIPROTKB|I3LRN5 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 OMA:MSSSDAG
EMBL:FP102591 Ensembl:ENSSSCT00000026653 Uniprot:I3LRN5
Length = 404
Score = 174 (66.3 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 57/151 (37%), Positives = 77/151 (50%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
RML+ ++VGSIIG+KGE +K+I E++ ARI I +G ER I+
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGSTA-------- 70
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVST-----KLLVPASQAGSLIGKQGGTVKSI 247
+ I LD D AP+ GG VS +L++PASQ GSLIGK G +K I
Sbjct: 71 --AVFHAVSMIAFKLDEDLCAAPAN-GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEI 127
Query: 248 QEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+E + V+V G DL +R V V G
Sbjct: 128 RETTGAQVQVAG--DL--LPNSTERAVTVSG 154
Score = 101 (40.6 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 46/175 (26%), Positives = 69/175 (39%)
Query: 349 PPPRQAESYYPPADLPPPM--EKQPHQGISAYGREAPVNV------HGSSNAQSTPSMI- 399
PP Y+P L + Q YG P V G + ++PSM+
Sbjct: 174 PPKGATIPYHPSLSLGTVLLSTNQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSMVP 233
Query: 400 ------TQVT-QQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEIS 452
TQ + Q+ +P VIG G+ IS IR+ SGA + I GE V I+
Sbjct: 234 AGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTIT 293
Query: 453 GTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYAS-MYGSPPSNPGHAG 506
G+ + AQ LI + A + S ++ P++ + P + PG G
Sbjct: 294 GSPVSIALAQYLITACLETAKSTSGGTPSSAPTDLPAPFSPPLTALPTAPPGLLG 348
Score = 79 (32.9 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 20/73 (27%), Positives = 38/73 (52%)
Query: 222 VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDAS 281
++ ++L+ + GS+IGK+G TVK I+E S+ + + P +R+ + G +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI-SEGSCP------ERITTITGSTA 70
Query: 282 GVHKAMELIGSHL 294
V A+ +I L
Sbjct: 71 AVFHAVSMIAFKL 83
Score = 39 (18.8 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 365 PPMEKQPHQGISAY-GREAPVNVHGSSNAQ 393
PP P G++AY + A N GS A+
Sbjct: 370 PPASPGPPPGLAAYTAKMAAAN--GSKKAE 397
>UNIPROTKB|F1NPL3 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00591502 Ensembl:ENSGALT00000021483 OMA:DLNMNLS
ArrayExpress:F1NPL3 Uniprot:F1NPL3
Length = 356
Score = 183 (69.5 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 52/158 (32%), Positives = 89/158 (56%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER V I+ P ++ A
Sbjct: 16 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTITG---PTDAIFKA 70
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
+ + + +++ +++ + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 71 FS---MIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 127
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R V + G + + ++ I
Sbjct: 128 AQVQVAG-DMLPN---STERAVTISGTPDAIIQCVKQI 161
Score = 92 (37.4 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 210 DSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQ 269
DS + G ++ +LL+ + GS+IGK+G TVK ++E S + + P
Sbjct: 1 DSKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGSCP----- 54
Query: 270 DDRVVEVVGDASGVHKAMELI 290
+R+V + G + KA +I
Sbjct: 55 -ERIVTITGPTDAIFKAFSMI 74
Score = 91 (37.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 391 NAQSTPSMITQ---VTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPG-- 445
NA T S +T VT ++ +P S ++IG G+ I IR S+GA V + +P
Sbjct: 83 NASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPNST 141
Query: 446 EMTVEISGTASQV-QTAQQL 464
E V ISGT + Q +Q+
Sbjct: 142 ERAVTISGTPDAIIQCVKQI 161
Score = 87 (35.7 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 35/123 (28%), Positives = 53/123 (43%)
Query: 346 QY-MPPPRQAESYYPPADLPP--PMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQV 402
QY +P P + + PP P+ Q G A+ P H +A S S
Sbjct: 230 QYAIPHPDLTKLHQLAMQHPPFTPLG-QTTPGFPAHFPSVP---HIGLDATSPTS----- 280
Query: 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQ 462
+ ++ IP +IG G+ I+ IR+ SGA + I E V I+G+ + + AQ
Sbjct: 281 SHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSPANISLAQ 340
Query: 463 QLI 465
LI
Sbjct: 341 YLI 343
>UNIPROTKB|G3X7R5 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:DAAA02052552 EMBL:DAAA02052553
Ensembl:ENSBTAT00000044049 Uniprot:G3X7R5
Length = 507
Score = 134 (52.2 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
Identities = 36/95 (37%), Positives = 53/95 (55%)
Query: 93 VPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFI 152
VP D+ P DS+ K+ E GST++ G G+ ++L+P+ GSIIG+ G+ I
Sbjct: 16 VPIDLDPPDSR---KRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTI 72
Query: 153 KKIVEETRARIKIL---DGPPGTTERAVMISAKEE 184
++ +ET A IK+ D PGTTER +I E
Sbjct: 73 VQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVE 107
Score = 114 (45.2 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
Identities = 41/113 (36%), Positives = 57/113 (50%)
Query: 181 AKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSG--TGGKVS-TKLLVPASQAGSLI 237
AK EP S L P K+ + + + +PS T + + K++VP S AG +I
Sbjct: 128 AKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLII 187
Query: 238 GKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
GK G TVK+I E S V++ D LQ+ RVV V G+ KA+ELI
Sbjct: 188 GKGGATVKAIMEQSGAWVQLSQKPD--GINLQE-RVVTVSGEPEQNRKAVELI 237
Score = 95 (38.5 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 41/154 (26%), Positives = 65/154 (42%)
Query: 351 PRQAESYYPPADLPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPL 410
P+ P + L P P + I +P S + T S QV ++ +P
Sbjct: 124 PQNVAKTEPVSILQPQTTVNPDR-IKQTLPSSPTTTKSSPSDPMTTSRANQV--KIIVPN 180
Query: 411 SYADAVIGTAGASISYIRRSSGATVTI-QETRGVP-GEMTVEISGTASQVQTAQQLI-QN 467
S A +IG GA++ I SGA V + Q+ G+ E V +SG Q + A +LI Q
Sbjct: 181 STAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQK 240
Query: 468 FMAEAAAPSQAQMGASADQGYNPYASMYGSPPSN 501
+ + S + + G ++ GSP +N
Sbjct: 241 IQEDPQSGSCLNISYANVTGPVANSNPTGSPYAN 274
Score = 72 (30.4 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG--VPGEMT--VEISGTASQVQT 460
++ +P + A++G G ++ + +GA + I + +G VPG V I+GT + Q
Sbjct: 425 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISK-KGEFVPGTRNRKVTITGTPAATQA 483
Query: 461 AQQLI 465
AQ LI
Sbjct: 484 AQYLI 488
Score = 61 (26.5 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 216 SGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLG-AEDLPVFALQDDRVV 274
S G K ++ VP + G+++GK G T+ QE + +++ E +P +R V
Sbjct: 416 STDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTR---NRKV 472
Query: 275 EVVGDASGVHKAMELI 290
+ G + A LI
Sbjct: 473 TITGTPAATQAAQYLI 488
>UNIPROTKB|J9NXS6 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048 CTD:4857
KO:K14944 OMA:FRQNNTA EMBL:AAEX03005630 EMBL:AAEX03005631
RefSeq:XP_547754.1 Ensembl:ENSCAFT00000044255 GeneID:490632
KEGG:cfa:490632 Uniprot:J9NXS6
Length = 507
Score = 134 (52.2 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
Identities = 36/95 (37%), Positives = 53/95 (55%)
Query: 93 VPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFI 152
VP D+ P DS+ K+ E GST++ G G+ ++L+P+ GSIIG+ G+ I
Sbjct: 16 VPIDLDPPDSR---KRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTI 72
Query: 153 KKIVEETRARIKIL---DGPPGTTERAVMISAKEE 184
++ +ET A IK+ D PGTTER +I E
Sbjct: 73 VQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVE 107
Score = 114 (45.2 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
Identities = 41/113 (36%), Positives = 57/113 (50%)
Query: 181 AKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSG--TGGKVS-TKLLVPASQAGSLI 237
AK EP S L P K+ + + + +PS T + + K++VP S AG +I
Sbjct: 128 AKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLII 187
Query: 238 GKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
GK G TVK+I E S V++ D LQ+ RVV V G+ KA+ELI
Sbjct: 188 GKGGATVKAIMEQSGAWVQLSQKPD--GINLQE-RVVTVSGEPEQNRKAVELI 237
Score = 95 (38.5 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 41/154 (26%), Positives = 65/154 (42%)
Query: 351 PRQAESYYPPADLPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPL 410
P+ P + L P P + I +P S + T S QV ++ +P
Sbjct: 124 PQNVAKTEPVSILQPQTTVNPDR-IKQTLPSSPTTTKSSPSDPMTTSRANQV--KIIVPN 180
Query: 411 SYADAVIGTAGASISYIRRSSGATVTI-QETRGVP-GEMTVEISGTASQVQTAQQLI-QN 467
S A +IG GA++ I SGA V + Q+ G+ E V +SG Q + A +LI Q
Sbjct: 181 STAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQK 240
Query: 468 FMAEAAAPSQAQMGASADQGYNPYASMYGSPPSN 501
+ + S + + G ++ GSP +N
Sbjct: 241 IQEDPQSGSCLNISYANVTGPVANSNPTGSPYAN 274
Score = 72 (30.4 bits), Expect = 3.1e-16, Sum P(3) = 3.1e-16
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG--VPGEMT--VEISGTASQVQT 460
++ +P + A++G G ++ + +GA + I + +G VPG V I+GT + Q
Sbjct: 425 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISK-KGEFVPGTRNRKVTITGTPAATQA 483
Query: 461 AQQLI 465
AQ LI
Sbjct: 484 AQYLI 488
Score = 61 (26.5 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 216 SGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLG-AEDLPVFALQDDRVV 274
S G K ++ VP + G+++GK G T+ QE + +++ E +P +R V
Sbjct: 416 STDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTR---NRKV 472
Query: 275 EVVGDASGVHKAMELI 290
+ G + A LI
Sbjct: 473 TITGTPAATQAAQYLI 488
>UNIPROTKB|F1RM28 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:FP102597 Ensembl:ENSSSCT00000003434 Uniprot:F1RM28
Length = 554
Score = 209 (78.6 bits), Expect = 3.5e-16, Sum P(2) = 3.5e-16
Identities = 71/236 (30%), Positives = 113/236 (47%)
Query: 70 EDQVPEDHVPEDQVPEDHVPE----DQVPEDIVPEDSQLQEKQEN--EVNLAVGSTEKKW 123
+ Q P+ P Q P P+ Q P P +S+ + ++ E V T++
Sbjct: 29 QPQPPQQPSPPPQQPPPPPPQPPQQQQPPPQAPPMESEAPDSRKRPLETPPEVVCTKRSN 88
Query: 124 PGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKIL---DGPPGTTERAVMIS 180
G GE ++L+P+ GSIIG+ G+ I ++ +ET A IK+ D PGTTER ++
Sbjct: 89 TGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQ 148
Query: 181 AKEEPESSLPPAMDGLLR------VHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAG 234
E +++ + +R +V+ L ++ P KL+VP S AG
Sbjct: 149 GTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAK---QAKLIVPNSTAG 205
Query: 235 SLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+IGK G TVK++ E S V++ ++ LQ+ RVV V G+ VHKA+ I
Sbjct: 206 LIIGKGGATVKAVMEQSGAWVQL--SQKPEGINLQE-RVVTVSGEPEQVHKAVSAI 258
Score = 65 (27.9 bits), Expect = 3.5e-16, Sum P(2) = 3.5e-16
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG--VPGEMT--VEISGTASQVQT 460
++ +P + A++G G ++ + +GA + I + +G +PG V I+G+ + Q
Sbjct: 472 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISK-KGEFLPGTRNRRVTITGSPAATQA 530
Query: 461 AQQLI 465
AQ LI
Sbjct: 531 AQYLI 535
Score = 43 (20.2 bits), Expect = 6.8e-14, Sum P(2) = 6.8e-14
Identities = 19/55 (34%), Positives = 19/55 (34%)
Query: 452 SGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSNPGHAG 506
S AS V A N A AAA A A G P PP PG G
Sbjct: 364 SAAASGVLAAVAAGANPAAAAAANLLASYAGEAGAG--PAGGAAPPPPPPPGALG 416
>MGI|MGI:104297 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1"
species:10090 "Mus musculus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IC]
[GO:0007399 "nervous system development" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:104297 GO:GO:0005634 GO:GO:0003729
GO:GO:0000398 GeneTree:ENSGT00650000093048 CTD:4857
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944
OMA:FRQNNTA ChiTaRS:NOVA1 EMBL:AC108802 EMBL:AC156636 EMBL:AF232828
EMBL:AK047565 IPI:IPI00659424 RefSeq:NP_067336.1 UniGene:Mm.247195
ProteinModelPortal:Q9JKN6 SMR:Q9JKN6 PhosphoSite:Q9JKN6
PaxDb:Q9JKN6 PRIDE:Q9JKN6 Ensembl:ENSMUST00000021438 GeneID:664883
KEGG:mmu:664883 UCSC:uc007nmd.2 InParanoid:Q9JKN6 NextBio:426120
Bgee:Q9JKN6 CleanEx:MM_NOVA1 Genevestigator:Q9JKN6
GermOnline:ENSMUSG00000021047 Uniprot:Q9JKN6
Length = 507
Score = 133 (51.9 bits), Expect = 4.0e-16, Sum P(3) = 4.0e-16
Identities = 36/95 (37%), Positives = 53/95 (55%)
Query: 93 VPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFI 152
VP D+ P DS+ K+ E GST++ G G+ ++L+P+ GSIIG+ G+ I
Sbjct: 16 VPIDLDPPDSR---KRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTI 72
Query: 153 KKIVEETRARIKIL---DGPPGTTERAVMISAKEE 184
++ +ET A IK+ D PGTTER +I E
Sbjct: 73 VQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE 107
Score = 114 (45.2 bits), Expect = 4.0e-16, Sum P(3) = 4.0e-16
Identities = 41/113 (36%), Positives = 57/113 (50%)
Query: 181 AKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSG--TGGKVS-TKLLVPASQAGSLI 237
AK EP S L P K+ + + + +PS T + + K++VP S AG +I
Sbjct: 128 AKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLII 187
Query: 238 GKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
GK G TVK+I E S V++ D LQ+ RVV V G+ KA+ELI
Sbjct: 188 GKGGATVKAIMEQSGAWVQLSQKPD--GINLQE-RVVTVSGEPEQNRKAVELI 237
Score = 95 (38.5 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 41/154 (26%), Positives = 65/154 (42%)
Query: 351 PRQAESYYPPADLPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPL 410
P+ P + L P P + I +P S + T S QV ++ +P
Sbjct: 124 PQNVAKTEPVSILQPQTTVNPDR-IKQTLPSSPTTTKSSPSDPMTTSRANQV--KIIVPN 180
Query: 411 SYADAVIGTAGASISYIRRSSGATVTI-QETRGVP-GEMTVEISGTASQVQTAQQLI-QN 467
S A +IG GA++ I SGA V + Q+ G+ E V +SG Q + A +LI Q
Sbjct: 181 STAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQK 240
Query: 468 FMAEAAAPSQAQMGASADQGYNPYASMYGSPPSN 501
+ + S + + G ++ GSP +N
Sbjct: 241 IQEDPQSGSCLNISYANVTGPVANSNPTGSPYAN 274
Score = 72 (30.4 bits), Expect = 4.0e-16, Sum P(3) = 4.0e-16
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG--VPGEMT--VEISGTASQVQT 460
++ +P + A++G G ++ + +GA + I + +G VPG V I+GT + Q
Sbjct: 425 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISK-KGEFVPGTRNRKVTITGTPAATQA 483
Query: 461 AQQLI 465
AQ LI
Sbjct: 484 AQYLI 488
Score = 61 (26.5 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 216 SGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLG-AEDLPVFALQDDRVV 274
S G K ++ VP + G+++GK G T+ QE + +++ E +P +R V
Sbjct: 416 STDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTR---NRKV 472
Query: 275 EVVGDASGVHKAMELI 290
+ G + A LI
Sbjct: 473 TITGTPAATQAAQYLI 488
>UNIPROTKB|D4AAF8 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003729 GO:GO:0000398 EMBL:CH473947
GeneTree:ENSGT00650000093048 CTD:4857 KO:K14944 UniGene:Rn.232418
IPI:IPI00556974 RefSeq:XP_001075031.1 RefSeq:XP_234098.2 SMR:D4AAF8
Ensembl:ENSRNOT00000050372 GeneID:298992 KEGG:rno:298992
NextBio:644625 Uniprot:D4AAF8
Length = 507
Score = 133 (51.9 bits), Expect = 4.0e-16, Sum P(3) = 4.0e-16
Identities = 36/95 (37%), Positives = 53/95 (55%)
Query: 93 VPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFI 152
VP D+ P DS+ K+ E GST++ G G+ ++L+P+ GSIIG+ G+ I
Sbjct: 16 VPIDLDPPDSR---KRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTI 72
Query: 153 KKIVEETRARIKIL---DGPPGTTERAVMISAKEE 184
++ +ET A IK+ D PGTTER +I E
Sbjct: 73 VQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE 107
Score = 114 (45.2 bits), Expect = 4.0e-16, Sum P(3) = 4.0e-16
Identities = 41/113 (36%), Positives = 57/113 (50%)
Query: 181 AKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSG--TGGKVS-TKLLVPASQAGSLI 237
AK EP S L P K+ + + + +PS T + + K++VP S AG +I
Sbjct: 128 AKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLII 187
Query: 238 GKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
GK G TVK+I E S V++ D LQ+ RVV V G+ KA+ELI
Sbjct: 188 GKGGATVKAIMEQSGAWVQLSQKPD--GINLQE-RVVTVSGEPEQNRKAVELI 237
Score = 95 (38.5 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 41/154 (26%), Positives = 65/154 (42%)
Query: 351 PRQAESYYPPADLPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPL 410
P+ P + L P P + I +P S + T S QV ++ +P
Sbjct: 124 PQNVAKTEPVSILQPQTTVNPDR-IKQTLPSSPTTTKSSPSDPMTTSRANQV--KIIVPN 180
Query: 411 SYADAVIGTAGASISYIRRSSGATVTI-QETRGVP-GEMTVEISGTASQVQTAQQLI-QN 467
S A +IG GA++ I SGA V + Q+ G+ E V +SG Q + A +LI Q
Sbjct: 181 STAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQK 240
Query: 468 FMAEAAAPSQAQMGASADQGYNPYASMYGSPPSN 501
+ + S + + G ++ GSP +N
Sbjct: 241 IQEDPQSGSCLNISYANVTGPVANSNPTGSPYAN 274
Score = 72 (30.4 bits), Expect = 4.0e-16, Sum P(3) = 4.0e-16
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG--VPGEMT--VEISGTASQVQT 460
++ +P + A++G G ++ + +GA + I + +G VPG V I+GT + Q
Sbjct: 425 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISK-KGEFVPGTRNRKVTITGTPAATQA 483
Query: 461 AQQLI 465
AQ LI
Sbjct: 484 AQYLI 488
Score = 61 (26.5 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 216 SGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLG-AEDLPVFALQDDRVV 274
S G K ++ VP + G+++GK G T+ QE + +++ E +P +R V
Sbjct: 416 STDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTR---NRKV 472
Query: 275 EVVGDASGVHKAMELI 290
+ G + A LI
Sbjct: 473 TITGTPAATQAAQYLI 488
>UNIPROTKB|H3BRU6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 Ensembl:ENST00000562264 Uniprot:H3BRU6
Length = 301
Score = 176 (67.0 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
Identities = 48/152 (31%), Positives = 88/152 (57%)
Query: 139 QKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDGLLR 198
++VGSIIG+KGE +KK+ EE+ ARI I +G ER + ++ P +++ A ++
Sbjct: 4 KEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKAFAMII- 57
Query: 199 VHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVL 258
++ + + S +++ + + V+ +L+VPASQ GSLIGK G +K I+E++ V+V
Sbjct: 58 --DKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA 115
Query: 259 GAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
G + LP +R + + G + + ++ I
Sbjct: 116 G-DMLPN---STERAITIAGIPQSIIECVKQI 143
Score = 103 (41.3 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 33/116 (28%), Positives = 60/116 (51%)
Query: 67 QLTEDQVPEDHVPEDQVPEDHVPEDQVPEDIVPEDSQLQEKQENEVNLAV-GSTEKKWPG 125
++ E+ ++ E PE + I + + +K E +++ ++ ST P
Sbjct: 19 KMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRP- 77
Query: 126 WPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKIL-DGPPGTTERAVMIS 180
P R++VPA + GS+IG+ G IK+I E T A++++ D P +TERA+ I+
Sbjct: 78 -P--VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA 130
Score = 86 (35.3 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQ 462
+ ++ IP +IG GA I+ IR+ SGA + I + V I+G+A+ + AQ
Sbjct: 225 SHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQ 284
Query: 463 QLI 465
LI
Sbjct: 285 YLI 287
Score = 78 (32.5 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 21/72 (29%), Positives = 34/72 (47%)
Query: 223 STKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASG 282
S +L +P G +IG+QG + I++ S +++ PV DR V + G A+
Sbjct: 225 SHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEG-STDRQVTITGSAAS 279
Query: 283 VHKAMELIGSHL 294
+ A LI L
Sbjct: 280 ISLAQYLINVRL 291
>TAIR|locus:2066020 [details] [associations]
symbol:AT2G22600 "AT2G22600" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002685 GO:GO:0003723 KO:K13162
IPI:IPI00526685 RefSeq:NP_850026.1 UniGene:At.52868
ProteinModelPortal:F4IJK5 SMR:F4IJK5 PRIDE:F4IJK5
EnsemblPlants:AT2G22600.1 GeneID:816791 KEGG:ath:AT2G22600
OMA:RVVCHAS Uniprot:F4IJK5
Length = 632
Score = 184 (69.8 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 60/189 (31%), Positives = 97/189 (51%)
Query: 131 VFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPP--GTTERAVMISAKEEPESS 188
VF+++ + G IIG++G I+ + ET A I + G P + ER V +SA+E ES
Sbjct: 278 VFKIIFTSVVAGGIIGKQGTIIRALQNETGASISV--GAPLKVSGERVVTVSARENLESR 335
Query: 189 LPPAMDGLLRVHKRIVDGLDSDSSHAPS-GTGGKVSTKLLVPASQAGSLIGKQGGTVKSI 247
A + L V R V+ +D + P G V TKLLVP+ A S G G ++I
Sbjct: 336 YSHAQNALALVFARSVE-IDVEKGLRPGLHNGAIVKTKLLVPSHFANSFNGN--GNREAI 392
Query: 248 QEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVDRSIIPLF 307
A+ V + + + +++ V+E+ G+ S V KA+ + S LR+ L+ + + L
Sbjct: 393 I-ATGADVHISVGNQVLEWISENEVVIEIKGEYSHVQKALTHVSSKLRENLLPKKV--LG 449
Query: 308 EMHMQMPNP 316
EM ++ NP
Sbjct: 450 EMRARVSNP 458
Score = 96 (38.9 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 26/105 (24%), Positives = 53/105 (50%)
Query: 192 AMDGLLRVHKRIVDGLDS-DSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEA 250
A L+RV +R L + D G + +L +Q G+++G G V+ ++
Sbjct: 109 AQTALIRVLERSWVVLAAKDGGGVVDGEDEEAYCGILADRNQIGAVLGLGGKNVEWMRRN 168
Query: 251 SNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLR 295
S ++RVL P+ ++D ++++ GD V KA+ ++ S+++
Sbjct: 169 SGAMIRVLPP---PICGTKNDELIQITGDVLAVKKALVMVSSYIQ 210
Score = 90 (36.7 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 19/73 (26%), Positives = 39/73 (53%)
Query: 399 ITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQV 458
+ ++T ++ + ++ G G + +++ SGA V +++ G E TV ISG Q
Sbjct: 561 VRKITLELAVEKDALGSLYGRDGTGVDNLQQISGANVDVKDPTGT--EATVLISGNPEQA 618
Query: 459 QTAQQLIQNFMAE 471
+TA LI++ + +
Sbjct: 619 RTAMSLIESILTD 631
Score = 64 (27.6 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARI 163
P E+ R++ A +G IIG G + K+ ET +I
Sbjct: 22 PDETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKI 58
Score = 60 (26.2 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 413 ADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEA 472
A +IG G I ++ +GA++++ V GE V +S + +++ QN +A
Sbjct: 288 AGGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVSAREN-LESRYSHAQNALALV 346
Query: 473 AAPS 476
A S
Sbjct: 347 FARS 350
Score = 59 (25.8 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 27/100 (27%), Positives = 44/100 (44%)
Query: 402 VTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGV-----PGEMTVEISGTAS 456
V ++ +P +A++ G G + I ++GA V I V E+ +EI G S
Sbjct: 369 VKTKLLVPSHFANSFNGN-GNREAII--ATGADVHISVGNQVLEWISENEVVIEIKGEYS 425
Query: 457 QVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYG 496
VQ A + + + E P + +G + NPY S G
Sbjct: 426 HVQKALTHVSSKLRENLLPKKV-LGEMRARVSNPYESAGG 464
>ZFIN|ZDB-GENE-040426-2122 [details] [associations]
symbol:zgc:65870 "zgc:65870" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-040426-2122
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CU856621
EMBL:AL954840 EMBL:CABZ01011786 EMBL:CABZ01011787 EMBL:CABZ01011788
EMBL:CABZ01011789 EMBL:CABZ01011790 EMBL:CU462880 EMBL:CU469461
IPI:IPI01016643 Ensembl:ENSDART00000137945 Bgee:F1Q8M8
Uniprot:F1Q8M8
Length = 464
Score = 178 (67.7 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 57/162 (35%), Positives = 88/162 (54%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +K+I EE+ ARI I +G ER + I+ A
Sbjct: 30 RLLMHGKEVGSIIGKKGETVKRIREESSARINISEG--SCPERIITITG----------A 77
Query: 193 MDGLLRVHKRIVDGLDSD-SSHAPSGT-GGK--VSTKLLVPASQAGSLIGKQGGTVKSIQ 248
+ + R I L+ D ++ +GT K V+ +L++PASQ GSLIGK G +K I+
Sbjct: 78 TECVFRAFTMITIKLEEDLAALVANGTVTSKPPVTLRLVIPASQCGSLIGKGGSKIKEIR 137
Query: 249 EASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
E + V+V G DL +R V + G + + ++LI
Sbjct: 138 EKTGAQVQVAG--DL--LPNSTERGVTISGSQDAIIQCVKLI 175
Score = 90 (36.7 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 24/84 (28%), Positives = 41/84 (48%)
Query: 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQ 462
+Q++ IP ++IG G I+ IR+ SGA + I + V I+G+ + AQ
Sbjct: 281 SQELLIPNDLIGSIIGRQGTKINEIRQVSGAQIKIGSQLDSTSDRHVTITGSPISINLAQ 340
Query: 463 QLIQNFMAEAAAPSQAQ-MGASAD 485
LI + + A + +Q+ M D
Sbjct: 341 YLITSCLETAKSTAQSSSMSTPVD 364
Score = 83 (34.3 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 217 GTGGK---VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRV 273
G GG ++ +LL+ + GS+IGK+G TVK I+E S+ + + P +R+
Sbjct: 19 GDGGMNVTLTLRLLMHGKEVGSIIGKKGETVKRIREESSARINI-SEGSCP------ERI 71
Query: 274 VEVVGDASGVHKAMELIGSHLRKFL 298
+ + G V +A +I L + L
Sbjct: 72 ITITGATECVFRAFTMITIKLEEDL 96
Score = 56 (24.8 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 448 TVEISGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSNP 502
T + + +S + T L +F + A P+ + A A G P+A + G+P + P
Sbjct: 349 TAKSTAQSSSMSTPVDLNMSF-TQTAPPASSSAAALAAMGGLPHAPILGAPYTLP 402
>FB|FBgn0261552 [details] [associations]
symbol:ps "pasilla" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEP] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0000398 HSSP:Q9UNW9 FlyBase:FBgn0261552 EMBL:BT001623
ProteinModelPortal:Q8IGS7 PRIDE:Q8IGS7 InParanoid:Q8IGS7
ArrayExpress:Q8IGS7 Bgee:Q8IGS7 Uniprot:Q8IGS7
Length = 605
Score = 176 (67.0 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 59/212 (27%), Positives = 100/212 (47%)
Query: 94 PEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESVF-------RMLVPAQKVGSIIG 146
P ++ + Q Q++Q++ L G + P + + F ++LVPA G+IIG
Sbjct: 58 PPAMMMQQHQQQQQQQDPQKL--GQQFHQQPAFQLQQSFCETTYHMKILVPAVASGAIIG 115
Query: 147 RKGEFIKKIVEETRARIKIL---DGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRI 203
+ GE I + ++T AR+K+ D PGTTER +I+ E + + +R +
Sbjct: 116 KGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEAIMVVMEFIMDKIREKPDL 175
Query: 204 VDGL-DSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAED 262
+ + D+DS K+LVP S AG +IGK G +K I+E S V++
Sbjct: 176 TNKIVDTDSKQTQERDK---QVKILVPNSTAGMIIGKGGAFIKQIKEESGSYVQI---SQ 229
Query: 263 LPVFALQDDRVVEVVGDASGVHKAMELIGSHL 294
P +R + ++GD A ++I S +
Sbjct: 230 KPTDVSLQERCITIIGDKENNKNACKMILSKI 261
Score = 96 (38.9 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 34/127 (26%), Positives = 60/127 (47%)
Query: 350 PPRQAESYYPPADLPPPMEKQPHQGISAY-GREAPVNVHGSSNAQSTPSMITQVTQQMQI 408
P R S PA P + G++A G + G S + + + ++ ++ +++
Sbjct: 465 PFRHLGSATAPAATPVSLNNNSF-GLTATTGTATTAQLGGLSKSPTPGDLSSKDSKNVEV 523
Query: 409 PLSYADAVIGTAGASISYIRRSSGATVTIQETRGV--PGEMT--VEISGTASQVQTAQQL 464
P A++G +G S+ I+ SGA V I + +G+ PG V I+G S + AQ L
Sbjct: 524 PEVIIGAILGPSGRSLVEIQHVSGANVQISK-KGIFAPGTRNRIVTITGQPSAIAKAQYL 582
Query: 465 IQNFMAE 471
I+ + E
Sbjct: 583 IEQKINE 589
Score = 62 (26.9 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 27/89 (30%), Positives = 40/89 (44%)
Query: 419 TAGASISYIRRSSGATVTIQETRGVPGEMTVE-ISGTASQVQTAQQLIQNFMAEAAA-PS 476
T GA S + G T Q+T T + G QV Q A AA+ P+
Sbjct: 394 TNGAH-STLGNFLGVTTLDQQTAAAASAATASNVFGAVGQVNLEQYAAAVASAAAASRPT 452
Query: 477 QAQMGASADQGYNPYASMYGS---PPSNP 502
Q+Q+ A+A Q ++P+ + GS P + P
Sbjct: 453 QSQLDAAAVQ-FDPFRHL-GSATAPAATP 479
Score = 44 (20.5 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 26/123 (21%), Positives = 50/123 (40%)
Query: 375 ISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPL---SYADAVIGTAGASISYIRRSS 431
++ G +N+ GS N ++ TQ+ + +++ + Y++ V A++S + +
Sbjct: 325 VNGTGINLSINL-GSPNPAPNLAVATQLLEHIKVAMRGSGYSETVTNEVVAALSVLAKY- 382
Query: 432 GATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPY 491
GV G M V +S T A + NF+ Q ASA N +
Sbjct: 383 ----------GVLG-MGVGVSHTNG----AHSTLGNFLGVTTLDQQTAAAASAATASNVF 427
Query: 492 ASM 494
++
Sbjct: 428 GAV 430
>UNIPROTKB|P51513 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0007268 "synaptic
transmission" evidence=TAS] [GO:0007626 "locomotory behavior"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0008380 GO:GO:0007268
GO:GO:0003729 GO:GO:0007626 GO:GO:0003723 EMBL:CH471078
GO:GO:0000398 EMBL:U04840 EMBL:AK289639 EMBL:AK291022 EMBL:BC075038
EMBL:BC075039 EMBL:Z70771 IPI:IPI00019244 IPI:IPI00221187
IPI:IPI00221188 IPI:IPI00816603 PIR:I38489 RefSeq:NP_002506.2
RefSeq:NP_006480.2 RefSeq:NP_006482.1 UniGene:Hs.31588 PDB:1DT4
PDB:2ANN PDB:2ANR PDBsum:1DT4 PDBsum:2ANN PDBsum:2ANR
ProteinModelPortal:P51513 SMR:P51513 IntAct:P51513
MINT:MINT-1381951 STRING:P51513 PhosphoSite:P51513 DMDM:1709303
PRIDE:P51513 Ensembl:ENST00000344429 Ensembl:ENST00000539517
GeneID:4857 KEGG:hsa:4857 UCSC:uc001wpy.3 UCSC:uc001wqa.3
UCSC:uc001wqb.3 CTD:4857 GeneCards:GC14M026915 H-InvDB:HIX0037755
HGNC:HGNC:7886 HPA:HPA004155 MIM:602157 neXtProt:NX_P51513
PharmGKB:PA31688 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 InParanoid:P51513 KO:K14944 OMA:FRQNNTA
ChiTaRS:NOVA1 EvolutionaryTrace:P51513 GenomeRNAi:4857
NextBio:18710 ArrayExpress:P51513 Bgee:P51513 CleanEx:HS_NOVA1
Genevestigator:P51513 GermOnline:ENSG00000139910 Uniprot:P51513
Length = 510
Score = 128 (50.1 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 36/98 (36%), Positives = 53/98 (54%)
Query: 93 VPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFI 152
VP D+ P DS+ K+ E GST++ G G+ ++L+P+ GSIIG+ G+ I
Sbjct: 16 VPIDLDPPDSR---KRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTI 72
Query: 153 KKIVEETRARIKIL------DGPPGTTERAVMISAKEE 184
++ +ET A IK+ D PGTTER +I E
Sbjct: 73 VQLQKETGATIKLSKLSKSKDFYPGTTERVCLIQGTVE 110
Score = 113 (44.8 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 40/113 (35%), Positives = 57/113 (50%)
Query: 181 AKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSG--TGGKVS-TKLLVPASQAGSLI 237
AK EP S L P K+ + + + +PS T + + K++VP S AG +I
Sbjct: 131 AKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLII 190
Query: 238 GKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
GK G TVK++ E S V++ D LQ+ RVV V G+ KA+ELI
Sbjct: 191 GKGGATVKAVMEQSGAWVQLSQKPD--GINLQE-RVVTVSGEPEQNRKAVELI 240
Score = 94 (38.1 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 40/154 (25%), Positives = 65/154 (42%)
Query: 351 PRQAESYYPPADLPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPL 410
P+ P + L P P + I +P S + T S QV ++ +P
Sbjct: 127 PQNVAKTEPVSILQPQTTVNPDR-IKQTLPSSPTTTKSSPSDPMTTSRANQV--KIIVPN 183
Query: 411 SYADAVIGTAGASISYIRRSSGATVTI-QETRGVP-GEMTVEISGTASQVQTAQQLI-QN 467
S A +IG GA++ + SGA V + Q+ G+ E V +SG Q + A +LI Q
Sbjct: 184 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQK 243
Query: 468 FMAEAAAPSQAQMGASADQGYNPYASMYGSPPSN 501
+ + S + + G ++ GSP +N
Sbjct: 244 IQEDPQSGSCLNISYANVTGPVANSNPTGSPYAN 277
Score = 72 (30.4 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG--VPGEMT--VEISGTASQVQT 460
++ +P + A++G G ++ + +GA + I + +G VPG V I+GT + Q
Sbjct: 428 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISK-KGEFVPGTRNRKVTITGTPAATQA 486
Query: 461 AQQLI 465
AQ LI
Sbjct: 487 AQYLI 491
Score = 61 (26.5 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 20/76 (26%), Positives = 35/76 (46%)
Query: 216 SGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLG-AEDLPVFALQDDRVV 274
S G K ++ VP + G+++GK G T+ QE + +++ E +P +R V
Sbjct: 419 STDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTR---NRKV 475
Query: 275 EVVGDASGVHKAMELI 290
+ G + A LI
Sbjct: 476 TITGTPAATQAAQYLI 491
>ZFIN|ZDB-GENE-030131-4357 [details] [associations]
symbol:khsrp "KH-type splicing regulatory protein"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-030131-4357 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:AL929150 IPI:IPI00482681
Ensembl:ENSDART00000038330 ArrayExpress:F1QXP8 Bgee:F1QXP8
Uniprot:F1QXP8
Length = 666
Score = 174 (66.3 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 55/211 (26%), Positives = 99/211 (46%)
Query: 89 PEDQVPEDIVPEDSQLQEKQENEVNLAVGS---TEKKWPGWPGESVFRMLVPAQKVGSII 145
P+ + + PE ++ ++N L++G+ K P VP VG II
Sbjct: 63 PKRSLEDGDQPESKKMASDRDNAAALSIGAQLAALSKQSVRPSSMTEEYRVPDGMVGLII 122
Query: 146 GRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVD 205
GR GE I KI +++ +++I G +R+V I+ E +D ++ R
Sbjct: 123 GRGGEQINKIQQDSGCKVQIAPDSGGLPDRSVSITGGPEAIQKAKMMLDDIV---SR--- 176
Query: 206 GLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPV 265
G + S S G ++++PA +AG +IGK G T+K +QE + V+++ +D
Sbjct: 177 GRGTPPSFHESTNGSGHMQEMVIPAGKAGLIIGKGGETIKQLQERAG--VKMILIQDASQ 234
Query: 266 FALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
D+ + ++GD V +A E++ LR+
Sbjct: 235 -GPNMDKPLRIIGDPYKVQQAREMVQEILRE 264
Score = 98 (39.6 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 32/106 (30%), Positives = 42/106 (39%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEISGTASQVQTAQQL 464
IP VIG G ++ I + +GA V I G P I G+ Q+ A+QL
Sbjct: 409 IPAHKCGLVIGRGGENVKAINQQTGAFVEISRQPPPNGDPNFKLFTIRGSPQQIDHAKQL 468
Query: 465 IQNFMAEAAAPSQAQMGASADQG----YNPYASMYGSPPSNPGHAG 506
I++ + P G G YNP G PP P H G
Sbjct: 469 IEDKIEGPLCPVGPGPGGPGPAGPMGPYNPNPYQPG-PPGGPPHGG 513
Score = 98 (39.6 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 44/175 (25%), Positives = 71/175 (40%)
Query: 134 MLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGPPGTT-ERAVMISAKEEPESSLPP 191
M++PA K G IIG+ GE IK++ E + I I D G ++ + I
Sbjct: 197 MVIPAGKAGLIIGKGGETIKQLQERAGVKMILIQDASQGPNMDKPLRIIGDPYKVQQARE 256
Query: 192 AMDGLLRV--H---KRIVDG--LDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
+ +LR H +R G + G GG ++ VP G +IG+ G +
Sbjct: 257 MVQEILRERDHPGFERNEYGSRMGGGGGGGGGGGGGGGGIEVPVPRHSVGVVIGRSGEMI 316
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLV 299
K IQ + VR+ + P D++ ++G A +I L+ V
Sbjct: 317 KKIQNDAG--VRI---QFKPDDGTGPDKIAHIMGPPDRCEHAASIINELLQSIRV 366
Score = 75 (31.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 28/96 (29%), Positives = 39/96 (40%)
Query: 125 GWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKIL-DGPPGTTERAVMISAKE 183
G G + VP VG +IGR GE IKKI + RI+ D G + A ++ +
Sbjct: 289 GGGGGGGIEVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKPDDGTGPDKIAHIMGPPD 348
Query: 184 EPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTG 219
E + + L + R G P GTG
Sbjct: 349 RCEHAASIINELLQSIRVREEGG---GGPPGPPGTG 381
Score = 56 (24.8 bits), Expect = 3.4e-12, Sum P(3) = 3.4e-12
Identities = 13/65 (20%), Positives = 26/65 (40%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQL 464
++ +P VIG +G I I+ +G + + G + I G + + A +
Sbjct: 297 EVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKPDDGTGPDKIAHIMGPPDRCEHAASI 356
Query: 465 IQNFM 469
I +
Sbjct: 357 INELL 361
Score = 51 (23.0 bits), Expect = 3.4e-12, Sum P(3) = 3.4e-12
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 472 AAAPSQAQMGASADQGYNPYASMYGSPPSNPGHAG 506
AAA Q A+ + Y A+ YG PG G
Sbjct: 623 AAAAGQTDYSAAWAEYYRQQAAYYGQTGQTPGQPG 657
Score = 40 (19.1 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 35/154 (22%), Positives = 52/154 (33%)
Query: 347 YMPPPRQAESYYPPADLP---PPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMI--TQ 401
Y P P Q PP P PP + P +AY + P H S A + P+
Sbjct: 496 YNPNPYQPG---PPGGPPHGGPPGGQYPQGWGNAYQQWQP---HDPSKAATDPNAAWAAY 549
Query: 402 VTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTA 461
Q Q P A+ G A+ A +++ PG + + +
Sbjct: 550 YAQYYQQP--GGAAMPGQTPAA------QPAAPGPADQSQAAPGAAQPDYTKAWEEYYKK 601
Query: 462 QQLIQNFMAEAAAPSQAQMGASADQGYNPYASMY 495
A AAA GA+A G Y++ +
Sbjct: 602 MAAAGGGAAPAAAGGAQPAGAAAAAGQTDYSAAW 635
>RGD|1308032 [details] [associations]
symbol:Nova2 "neuro-oncological ventral antigen 2" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1308032 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00650000093048 IPI:IPI00958388
Ensembl:ENSRNOT00000057965 Uniprot:F1M4H5
Length = 516
Score = 200 (75.5 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 61/182 (33%), Positives = 93/182 (51%)
Query: 120 EKKWPG--WPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKIL---DGPPGTTE 174
E+ W G W GE ++L+P+ GSIIG+ G+ I ++ +ET A IK+ D PGTTE
Sbjct: 45 ERGWGGRGWEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTE 104
Query: 175 RAVMISAKEEPESSLPPAMDGLLR------VHKRIVDGLDSDSSHAPSGTGGKVSTKLLV 228
R ++ E ++ + +R +V+ L ++ P KL+V
Sbjct: 105 RVCLVQGTAEALNAAHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAK---QAKLIV 161
Query: 229 PASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAME 288
P S AG +IGK G TVK++ E S V++ ++ LQ+ RVV V G+ VHKA+
Sbjct: 162 PNSTAGLIIGKGGATVKAVMEQSGAWVQL--SQKPEGINLQE-RVVTVSGEPEQVHKAVS 218
Query: 289 LI 290
I
Sbjct: 219 AI 220
Score = 65 (27.9 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG--VPGEMT--VEISGTASQVQT 460
++ +P + A++G G ++ + +GA + I + +G +PG V I+G+ + Q
Sbjct: 434 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISK-KGEFLPGTRNRRVTITGSPAATQA 492
Query: 461 AQQLI 465
AQ LI
Sbjct: 493 AQYLI 497
Score = 48 (22.0 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 20/55 (36%), Positives = 21/55 (38%)
Query: 452 SGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSNPGHAG 506
S AS V A N A AAA A + D G P A PP PG G
Sbjct: 326 SAAASGVLAAVAAGANPAAAAAANLLASY--TGDAGAGPGAGAAPPPPPPPGALG 378
>MGI|MGI:1196294 [details] [associations]
symbol:Fubp1 "far upstream element (FUSE) binding protein 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1196294 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0003723
eggNOG:NOG300923 HOGENOM:HOG000231552 HOVERGEN:HBG000625
InterPro:IPR015096 Pfam:PF09005 EMBL:BC014763 EMBL:AK029458
IPI:IPI00467635 IPI:IPI00874931 UniGene:Mm.278922 PDB:1X4M PDB:1X4N
PDBsum:1X4M PDBsum:1X4N ProteinModelPortal:Q91WJ8 SMR:Q91WJ8
IntAct:Q91WJ8 STRING:Q91WJ8 PhosphoSite:Q91WJ8
REPRODUCTION-2DPAGE:Q91WJ8 PaxDb:Q91WJ8 PRIDE:Q91WJ8
UCSC:uc008rsv.1 InParanoid:Q91WJ8 EvolutionaryTrace:Q91WJ8
CleanEx:MM_FUBP1 Genevestigator:Q91WJ8
GermOnline:ENSMUSG00000028034 Uniprot:Q91WJ8
Length = 651
Score = 176 (67.0 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 51/155 (32%), Positives = 81/155 (52%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP VG IIGR GE I +I +E+ +I+I G ER+ M++ E S +D
Sbjct: 103 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 162
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
+ V K G + H G G V ++++PAS+AG +IGK G T+K +QE + V
Sbjct: 163 I--VEK----GRPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAG--V 213
Query: 256 RVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+++ +D P D+ + + GD V +A E++
Sbjct: 214 KMVMIQDGPQNT-GADKPLRITGDPYKVQQAKEMV 247
Score = 142 (55.0 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 47/171 (27%), Positives = 79/171 (46%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGPPGT-TERAVMISAKEE 184
PG +V +++PA K G +IG+ GE IK++ E + + I DGP T ++ + I+ +
Sbjct: 179 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG--D 236
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
P + A + +L + R G + S GG + +P G +IG+ G +
Sbjct: 237 PYK-VQQAKEMVLELI-RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMI 294
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLR 295
K IQ + VR+ + P DR+ ++ G A E+I LR
Sbjct: 295 KKIQNDAG--VRI---QFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLR 340
Score = 88 (36.0 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 27/99 (27%), Positives = 41/99 (41%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEISGTASQVQTAQQL 464
+P +IG G +I I + SGA + +Q + P I GT Q+ A+QL
Sbjct: 379 VPTGKTGLIIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRGTPQQIDYARQL 438
Query: 465 IQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSNPG 503
I+ + P +G G + +G PP PG
Sbjct: 439 IEEKIGGPVNP----LGPPVPHGPHGVPGPHG-PPGPPG 472
Score = 62 (26.9 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 16/67 (23%), Positives = 28/67 (41%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
IP VIG G I I+ +G + + G + +I+G + Q A ++I +
Sbjct: 278 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITD 337
Query: 468 FMAEAAA 474
+ A
Sbjct: 338 LLRSVQA 344
>RGD|1591892 [details] [associations]
symbol:Fubp1 "far upstream element (FUSE) binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 RGD:1591892
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 176 (67.0 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 51/155 (32%), Positives = 81/155 (52%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP VG IIGR GE I +I +E+ +I+I G ER+ M++ E S +D
Sbjct: 102 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 161
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
+ V K G + H G G V ++++PAS+AG +IGK G T+K +QE + V
Sbjct: 162 I--VEK----GRPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAG--V 212
Query: 256 RVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+++ +D P D+ + + GD V +A E++
Sbjct: 213 KMVMIQDGPQNT-GADKPLRITGDPYKVQQAKEMV 246
Score = 142 (55.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 47/171 (27%), Positives = 79/171 (46%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGPPGT-TERAVMISAKEE 184
PG +V +++PA K G +IG+ GE IK++ E + + I DGP T ++ + I+ +
Sbjct: 178 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG--D 235
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
P + A + +L + R G + S GG + +P G +IG+ G +
Sbjct: 236 PYK-VQQAKEMVLELI-RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMI 293
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLR 295
K IQ + VR+ + P DR+ ++ G A E+I LR
Sbjct: 294 KKIQNDAG--VRI---QFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLR 339
Score = 87 (35.7 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 27/99 (27%), Positives = 40/99 (40%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEISGTASQVQTAQQL 464
+P +IG G +I I + SGA + +Q P I GT Q+ A+QL
Sbjct: 378 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 437
Query: 465 IQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSNPG 503
I+ + P +G G + +G PP PG
Sbjct: 438 IEEKIGGPVNP----LGPPVPHGPHGVPGPHG-PPGPPG 471
Score = 62 (26.9 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 16/67 (23%), Positives = 28/67 (41%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
IP VIG G I I+ +G + + G + +I+G + Q A ++I +
Sbjct: 277 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITD 336
Query: 468 FMAEAAA 474
+ A
Sbjct: 337 LLRSVQA 343
>UNIPROTKB|Q32PX7 [details] [associations]
symbol:Fubp1 "Far upstream element-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0010628 "positive regulation
of gene expression" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1591892 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 176 (67.0 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 51/155 (32%), Positives = 81/155 (52%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP VG IIGR GE I +I +E+ +I+I G ER+ M++ E S +D
Sbjct: 102 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 161
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
+ V K G + H G G V ++++PAS+AG +IGK G T+K +QE + V
Sbjct: 162 I--VEK----GRPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAG--V 212
Query: 256 RVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+++ +D P D+ + + GD V +A E++
Sbjct: 213 KMVMIQDGPQNT-GADKPLRITGDPYKVQQAKEMV 246
Score = 142 (55.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 47/171 (27%), Positives = 79/171 (46%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGPPGT-TERAVMISAKEE 184
PG +V +++PA K G +IG+ GE IK++ E + + I DGP T ++ + I+ +
Sbjct: 178 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG--D 235
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
P + A + +L + R G + S GG + +P G +IG+ G +
Sbjct: 236 PYK-VQQAKEMVLELI-RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMI 293
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLR 295
K IQ + VR+ + P DR+ ++ G A E+I LR
Sbjct: 294 KKIQNDAG--VRI---QFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLR 339
Score = 87 (35.7 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 27/99 (27%), Positives = 40/99 (40%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEISGTASQVQTAQQL 464
+P +IG G +I I + SGA + +Q P I GT Q+ A+QL
Sbjct: 378 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 437
Query: 465 IQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSNPG 503
I+ + P +G G + +G PP PG
Sbjct: 438 IEEKIGGPVNP----LGPPVPHGPHGVPGPHG-PPGPPG 471
Score = 62 (26.9 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 16/67 (23%), Positives = 28/67 (41%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
IP VIG G I I+ +G + + G + +I+G + Q A ++I +
Sbjct: 277 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITD 336
Query: 468 FMAEAAA 474
+ A
Sbjct: 337 LLRSVQA 343
>UNIPROTKB|J9P014 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:AAEX03004886
Ensembl:ENSCAFT00000046408 Uniprot:J9P014
Length = 644
Score = 176 (67.0 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 51/155 (32%), Positives = 81/155 (52%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP VG IIGR GE I +I +E+ +I+I G ER+ M++ E S +D
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 166
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
+ V K G + H G G V ++++PAS+AG +IGK G T+K +QE + V
Sbjct: 167 I--VEK----GRPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAG--V 217
Query: 256 RVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+++ +D P D+ + + GD V +A E++
Sbjct: 218 KMVMIQDGPQNT-GADKPLRITGDPYKVQQAKEMV 251
Score = 142 (55.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 47/171 (27%), Positives = 79/171 (46%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGPPGT-TERAVMISAKEE 184
PG +V +++PA K G +IG+ GE IK++ E + + I DGP T ++ + I+ +
Sbjct: 183 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG--D 240
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
P + A + +L + R G + S GG + +P G +IG+ G +
Sbjct: 241 PYK-VQQAKEMVLELI-RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMI 298
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLR 295
K IQ + VR+ + P DR+ ++ G A E+I LR
Sbjct: 299 KKIQNDAG--VRI---QFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLR 344
Score = 87 (35.7 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 27/99 (27%), Positives = 40/99 (40%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEISGTASQVQTAQQL 464
+P +IG G +I I + SGA + +Q P I GT Q+ A+QL
Sbjct: 383 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 442
Query: 465 IQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSNPG 503
I+ + P +G G + +G PP PG
Sbjct: 443 IEEKIGGPVNP----LGPPVPHGPHGVPGPHG-PPGPPG 476
Score = 62 (26.9 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 16/67 (23%), Positives = 28/67 (41%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
IP VIG G I I+ +G + + G + +I+G + Q A ++I +
Sbjct: 282 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITD 341
Query: 468 FMAEAAA 474
+ A
Sbjct: 342 LLRSVQA 348
>UNIPROTKB|Q96AE4 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0010628 "positive
regulation of gene expression" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0003700 GO:GO:0003723
GO:GO:0006366 GO:GO:0003697 GO:GO:0010628 EMBL:U05040 EMBL:AC096948
EMBL:BC017247 IPI:IPI00375441 IPI:IPI00853059 PIR:A53184
RefSeq:NP_003893.2 UniGene:Hs.567380 PDB:1J4W PDB:2KXH PDBsum:1J4W
PDBsum:2KXH ProteinModelPortal:Q96AE4 SMR:Q96AE4 DIP:DIP-47273N
IntAct:Q96AE4 MINT:MINT-1374324 STRING:Q96AE4 PhosphoSite:Q96AE4
DMDM:116241370 REPRODUCTION-2DPAGE:IPI00375441 PaxDb:Q96AE4
PRIDE:Q96AE4 DNASU:8880 Ensembl:ENST00000294623
Ensembl:ENST00000370768 GeneID:8880 KEGG:hsa:8880 UCSC:uc001dii.3
CTD:8880 GeneCards:GC01M078400 HGNC:HGNC:4004 HPA:HPA006149
MIM:603444 neXtProt:NX_Q96AE4 PharmGKB:PA28420 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
ChiTaRS:FUBP1 EvolutionaryTrace:Q96AE4 GenomeRNAi:8880
NextBio:33343 ArrayExpress:Q96AE4 Bgee:Q96AE4 CleanEx:HS_FUBP1
Genevestigator:Q96AE4 GermOnline:ENSG00000162613 InterPro:IPR015096
Pfam:PF09005 Uniprot:Q96AE4
Length = 644
Score = 176 (67.0 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 51/155 (32%), Positives = 81/155 (52%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP VG IIGR GE I +I +E+ +I+I G ER+ M++ E S +D
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 166
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
+ V K G + H G G V ++++PAS+AG +IGK G T+K +QE + V
Sbjct: 167 I--VEK----GRPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAG--V 217
Query: 256 RVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+++ +D P D+ + + GD V +A E++
Sbjct: 218 KMVMIQDGPQNT-GADKPLRITGDPYKVQQAKEMV 251
Score = 138 (53.6 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 46/171 (26%), Positives = 79/171 (46%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGPPGT-TERAVMISAKEE 184
PG +V +++PA K G +IG+ GE IK++ E + + I DGP T ++ + I+ +
Sbjct: 183 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG--D 240
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
P + A + +L + R G + S GG + +P G +IG+ G +
Sbjct: 241 PYK-VQQAKEMVLELI-RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMI 298
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLR 295
K IQ + VR+ + P +R+ ++ G A E+I LR
Sbjct: 299 KKIQNDAG--VRI---QFKPDDGTTPERIAQITGPPDRCQHAAEIITDLLR 344
Score = 87 (35.7 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 27/99 (27%), Positives = 40/99 (40%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEISGTASQVQTAQQL 464
+P +IG G +I I + SGA + +Q P I GT Q+ A+QL
Sbjct: 383 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 442
Query: 465 IQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSNPG 503
I+ + P +G G + +G PP PG
Sbjct: 443 IEEKIGGPVNP----LGPPVPHGPHGVPGPHG-PPGPPG 476
Score = 65 (27.9 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 17/67 (25%), Positives = 28/67 (41%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
IP VIG G I I+ +G + + G E +I+G + Q A ++I +
Sbjct: 282 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAEIITD 341
Query: 468 FMAEAAA 474
+ A
Sbjct: 342 LLRSVQA 348
>UNIPROTKB|F1S9S5 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:CU695021
Ensembl:ENSSSCT00000004173 Uniprot:F1S9S5
Length = 645
Score = 176 (67.0 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 51/155 (32%), Positives = 81/155 (52%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP VG IIGR GE I +I +E+ +I+I G ER+ M++ E S +D
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 166
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
+ V K G + H G G V ++++PAS+AG +IGK G T+K +QE + V
Sbjct: 167 I--VEK----GRPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAG--V 217
Query: 256 RVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+++ +D P D+ + + GD V +A E++
Sbjct: 218 KMVMIQDGPQNT-GADKPLRITGDPYKVQQAKEMV 251
Score = 142 (55.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 47/171 (27%), Positives = 79/171 (46%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGPPGT-TERAVMISAKEE 184
PG +V +++PA K G +IG+ GE IK++ E + + I DGP T ++ + I+ +
Sbjct: 183 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG--D 240
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
P + A + +L + R G + S GG + +P G +IG+ G +
Sbjct: 241 PYK-VQQAKEMVLELI-RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMI 298
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLR 295
K IQ + VR+ + P DR+ ++ G A E+I LR
Sbjct: 299 KKIQNDAG--VRI---QFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLR 344
Score = 87 (35.7 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 27/99 (27%), Positives = 40/99 (40%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEISGTASQVQTAQQL 464
+P +IG G +I I + SGA + +Q P I GT Q+ A+QL
Sbjct: 383 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 442
Query: 465 IQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSNPG 503
I+ + P +G G + +G PP PG
Sbjct: 443 IEEKIGGPVNP----LGPPVPHGPHGVPGPHG-PPGPPG 476
Score = 62 (26.9 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 16/67 (23%), Positives = 28/67 (41%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
IP VIG G I I+ +G + + G + +I+G + Q A ++I +
Sbjct: 282 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITD 341
Query: 468 FMAEAAA 474
+ A
Sbjct: 342 LLRSVQA 348
>UNIPROTKB|E9PEB5 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
EMBL:AC096948 HGNC:HGNC:4004 ChiTaRS:FUBP1 InterPro:IPR015096
Pfam:PF09005 IPI:IPI00644386 ProteinModelPortal:E9PEB5 SMR:E9PEB5
PRIDE:E9PEB5 Ensembl:ENST00000370767 ArrayExpress:E9PEB5
Bgee:E9PEB5 Uniprot:E9PEB5
Length = 655
Score = 176 (67.0 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 51/155 (32%), Positives = 81/155 (52%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP VG IIGR GE I +I +E+ +I+I G ER+ M++ E S +D
Sbjct: 107 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 166
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
+ V K G + H G G V ++++PAS+AG +IGK G T+K +QE + V
Sbjct: 167 I--VEK----GRPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAG--V 217
Query: 256 RVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+++ +D P D+ + + GD V +A E++
Sbjct: 218 KMVMIQDGPQNT-GADKPLRITGDPYKVQQAKEMV 251
Score = 138 (53.6 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 46/171 (26%), Positives = 79/171 (46%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGPPGT-TERAVMISAKEE 184
PG +V +++PA K G +IG+ GE IK++ E + + I DGP T ++ + I+ +
Sbjct: 183 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG--D 240
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
P + A + +L + R G + S GG + +P G +IG+ G +
Sbjct: 241 PYK-VQQAKEMVLELI-RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMI 298
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLR 295
K IQ + VR+ + P +R+ ++ G A E+I LR
Sbjct: 299 KKIQNDAG--VRI---QFKPDDGTTPERIAQITGPPDRCQHAAEIITDLLR 344
Score = 87 (35.7 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 27/99 (27%), Positives = 40/99 (40%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEISGTASQVQTAQQL 464
+P +IG G +I I + SGA + +Q P I GT Q+ A+QL
Sbjct: 383 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 442
Query: 465 IQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSNPG 503
I+ + P +G G + +G PP PG
Sbjct: 443 IEEKIGGPVNP----LGPPVPHGPHGVPGPHG-PPGPPG 476
Score = 65 (27.9 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 17/67 (25%), Positives = 28/67 (41%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
IP VIG G I I+ +G + + G E +I+G + Q A ++I +
Sbjct: 282 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAEIITD 341
Query: 468 FMAEAAA 474
+ A
Sbjct: 342 LLRSVQA 348
>UNIPROTKB|B4DT31 [details] [associations]
symbol:FUBP1 "cDNA FLJ53425, highly similar to Far upstream
element-binding protein 1" species:9606 "Homo sapiens" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0003723 EMBL:AC096948 UniGene:Hs.567380
HGNC:HGNC:4004 HOGENOM:HOG000231552 HOVERGEN:HBG000625
ChiTaRS:FUBP1 InterPro:IPR015096 Pfam:PF09005 EMBL:AK300032
IPI:IPI00641948 SMR:B4DT31 STRING:B4DT31 Ensembl:ENST00000436586
UCSC:uc010orm.2 OMA:NGQEGDQ Uniprot:B4DT31
Length = 665
Score = 176 (67.0 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 51/155 (32%), Positives = 81/155 (52%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP VG IIGR GE I +I +E+ +I+I G ER+ M++ E S +D
Sbjct: 128 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 187
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
+ V K G + H G G V ++++PAS+AG +IGK G T+K +QE + V
Sbjct: 188 I--VEK----GRPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAG--V 238
Query: 256 RVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+++ +D P D+ + + GD V +A E++
Sbjct: 239 KMVMIQDGPQNT-GADKPLRITGDPYKVQQAKEMV 272
Score = 138 (53.6 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 46/171 (26%), Positives = 79/171 (46%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGPPGT-TERAVMISAKEE 184
PG +V +++PA K G +IG+ GE IK++ E + + I DGP T ++ + I+ +
Sbjct: 204 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG--D 261
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
P + A + +L + R G + S GG + +P G +IG+ G +
Sbjct: 262 PYK-VQQAKEMVLELI-RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMI 319
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLR 295
K IQ + VR+ + P +R+ ++ G A E+I LR
Sbjct: 320 KKIQNDAG--VRI---QFKPDDGTTPERIAQITGPPDRCQHAAEIITDLLR 365
Score = 87 (35.7 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 27/99 (27%), Positives = 40/99 (40%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEISGTASQVQTAQQL 464
+P +IG G +I I + SGA + +Q P I GT Q+ A+QL
Sbjct: 404 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 463
Query: 465 IQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSNPG 503
I+ + P +G G + +G PP PG
Sbjct: 464 IEEKIGGPVNP----LGPPVPHGPHGVPGPHG-PPGPPG 497
Score = 65 (27.9 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 17/67 (25%), Positives = 28/67 (41%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
IP VIG G I I+ +G + + G E +I+G + Q A ++I +
Sbjct: 303 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAEIITD 362
Query: 468 FMAEAAA 474
+ A
Sbjct: 363 LLRSVQA 369
>UNIPROTKB|E2RJQ2 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:AAEX03004886
Ensembl:ENSCAFT00000032426 Uniprot:E2RJQ2
Length = 668
Score = 176 (67.0 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 51/155 (32%), Positives = 81/155 (52%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP VG IIGR GE I +I +E+ +I+I G ER+ M++ E S +D
Sbjct: 130 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 189
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
+ V K G + H G G V ++++PAS+AG +IGK G T+K +QE + V
Sbjct: 190 I--VEK----GRPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAG--V 240
Query: 256 RVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+++ +D P D+ + + GD V +A E++
Sbjct: 241 KMVMIQDGPQNT-GADKPLRITGDPYKVQQAKEMV 274
Score = 142 (55.0 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 47/171 (27%), Positives = 79/171 (46%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGPPGT-TERAVMISAKEE 184
PG +V +++PA K G +IG+ GE IK++ E + + I DGP T ++ + I+ +
Sbjct: 206 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG--D 263
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
P + A + +L + R G + S GG + +P G +IG+ G +
Sbjct: 264 PYK-VQQAKEMVLELI-RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMI 321
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLR 295
K IQ + VR+ + P DR+ ++ G A E+I LR
Sbjct: 322 KKIQNDAG--VRI---QFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLR 367
Score = 87 (35.7 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 27/99 (27%), Positives = 40/99 (40%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEISGTASQVQTAQQL 464
+P +IG G +I I + SGA + +Q P I GT Q+ A+QL
Sbjct: 406 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 465
Query: 465 IQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSNPG 503
I+ + P +G G + +G PP PG
Sbjct: 466 IEEKIGGPVNP----LGPPVPHGPHGVPGPHG-PPGPPG 499
Score = 62 (26.9 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 16/67 (23%), Positives = 28/67 (41%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
IP VIG G I I+ +G + + G + +I+G + Q A ++I +
Sbjct: 305 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITD 364
Query: 468 FMAEAAA 474
+ A
Sbjct: 365 LLRSVQA 371
>FB|FBgn0262737 [details] [associations]
symbol:mub "mushroom-body expressed" species:7227 "Drosophila
melanogaster" [GO:0017130 "poly(C) RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IC] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:AE014296
GO:GO:0003723 GO:GO:0000381 GeneTree:ENSGT00550000074311 KO:K13162
EMBL:BT030417 RefSeq:NP_001163493.1 RefSeq:NP_001246873.1
UniGene:Dm.2502 SMR:A4IJ59 STRING:A4IJ59 EnsemblMetazoa:FBtr0301364
EnsemblMetazoa:FBtr0304980 GeneID:40436 KEGG:dme:Dmel_CG7437
CTD:40436 FlyBase:FBgn0262737 GenomeRNAi:40436 NextBio:818772
Uniprot:A4IJ59
Length = 557
Score = 168 (64.2 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 54/178 (30%), Positives = 85/178 (47%)
Query: 108 QENEVNLAVGSTEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILD 167
++N + + G K R+++ ++VGSIIG+KGE + + EE+ A+I I D
Sbjct: 2 EDNNTSSSAGGASIKHEDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD 61
Query: 168 GPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGK--VSTK 225
G ER V +S S + K+ + D G GK + +
Sbjct: 62 G--SCPERIVTVSGTTNAIFS------AFTLITKKFEEFNDV-------GKVGKTQIPIR 106
Query: 226 LLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGV 283
L+VPASQ GSLIGK G +K I++ + C ++V +E LP +R V + G A +
Sbjct: 107 LIVPASQCGSLIGKSGSKIKEIRQTTGCSIQV-ASEMLPN---STERAVTLSGSAEQI 160
Score = 93 (37.8 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 31/104 (29%), Positives = 44/104 (42%)
Query: 388 GSSNAQSTPSMITQVTQ-QMQIPLSYADAVIGTAGASISYIRRSSGATVTI---QETRGV 443
GS + P+ Q Q +M + +IG G I+ IR+ SGA + I +E G
Sbjct: 271 GSQLRTANPANRAQQQQHEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGG 330
Query: 444 PGEMTVEISGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQG 487
+ T+ ISG V AQ LI N E + + S G
Sbjct: 331 NTDRTITISGNPDSVALAQYLI-NMSVELQKANLLEQAQSQQNG 373
Score = 70 (29.7 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 19/76 (25%), Positives = 35/76 (46%)
Query: 222 VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDAS 281
++ +L++ + GS+IGK+G V +E S + + P +R+V V G +
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGS-CP------ERIVTVSGTTN 76
Query: 282 GVHKAMELIGSHLRKF 297
+ A LI +F
Sbjct: 77 AIFSAFTLITKKFEEF 92
Score = 41 (19.5 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 432 GATVTIQETRGVPGEMTVEISGTASQVQ-----TAQQLIQNFMAEAAAPSQAQMGASADQ 486
GAT+ + V G + + +G A +Q Q++ +N +A AA A M ++
Sbjct: 178 GATIPYRPKPQVTGPVILA-NGQAFTIQGNYAVPTQEVAKNPLASLAALGLAGMNPASTG 236
Query: 487 GYN 489
G N
Sbjct: 237 GIN 239
>ZFIN|ZDB-GENE-060526-113 [details] [associations]
symbol:nova1 "neuro-oncological ventral antigen 1"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-060526-113 GO:GO:0003723 EMBL:BX005407
GeneTree:ENSGT00650000093048 CTD:4857 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944 OMA:FRQNNTA
EMBL:BC171495 EMBL:BC171499 IPI:IPI00487894 RefSeq:NP_001038254.1
UniGene:Dr.103261 SMR:Q1LYC7 Ensembl:ENSDART00000097684
GeneID:555590 KEGG:dre:555590 InParanoid:Q1LYC7 OrthoDB:EOG40ZQZR
NextBio:20881056 Uniprot:Q1LYC7
Length = 495
Score = 190 (71.9 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 66/205 (32%), Positives = 103/205 (50%)
Query: 92 QVPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEF 151
Q P+ + P+ S K+ E ST++ G GE ++L+P+ GSIIG+ G+
Sbjct: 21 QSPQ-MDPDLSD-SRKRPLETPTEASSTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQT 78
Query: 152 IKKIVEETRARIKIL---DGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDGLD 208
I ++ +ET A IK+ D PGTTER +I E + + + +R + +
Sbjct: 79 IVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNGVHNFIAEKVREMPQSSQKTE 138
Query: 209 SDSSHAPSGTGG--KVS-TKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPV 265
S P T ++ KL+VP S AG +IGK G TVK++ E S V++ ++
Sbjct: 139 PVSILQPQTTVNPDRIKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL--SQKPEG 196
Query: 266 FALQDDRVVEVVGDASGVHKAMELI 290
LQ+ RVV V G+ KA+E+I
Sbjct: 197 INLQE-RVVTVSGEPEQNRKAVEII 220
Score = 67 (28.6 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG--VPGEMT--VEISGTASQVQT 460
++ +P + A++G G ++ + +GA + I + +G +PG V I+G+ + Q
Sbjct: 413 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISK-KGEFIPGTRNRKVTITGSPAATQA 471
Query: 461 AQQLI 465
AQ LI
Sbjct: 472 AQYLI 476
>UNIPROTKB|F1S9S9 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:CU695021
Ensembl:ENSSSCT00000004169 Uniprot:F1S9S9
Length = 708
Score = 176 (67.0 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 51/155 (32%), Positives = 81/155 (52%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP VG IIGR GE I +I +E+ +I+I G ER+ M++ E S +D
Sbjct: 147 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 206
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
+ V K G + H G G V ++++PAS+AG +IGK G T+K +QE + V
Sbjct: 207 I--VEK----GRPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAG--V 257
Query: 256 RVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+++ +D P D+ + + GD V +A E++
Sbjct: 258 KMVMIQDGPQNT-GADKPLRITGDPYKVQQAKEMV 291
Score = 142 (55.0 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 47/171 (27%), Positives = 79/171 (46%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGPPGT-TERAVMISAKEE 184
PG +V +++PA K G +IG+ GE IK++ E + + I DGP T ++ + I+ +
Sbjct: 223 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG--D 280
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
P + A + +L + R G + S GG + +P G +IG+ G +
Sbjct: 281 PYK-VQQAKEMVLELI-RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMI 338
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLR 295
K IQ + VR+ + P DR+ ++ G A E+I LR
Sbjct: 339 KKIQNDAG--VRI---QFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLR 384
Score = 87 (35.7 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 27/99 (27%), Positives = 40/99 (40%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEISGTASQVQTAQQL 464
+P +IG G +I I + SGA + +Q P I GT Q+ A+QL
Sbjct: 423 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 482
Query: 465 IQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSNPG 503
I+ + P +G G + +G PP PG
Sbjct: 483 IEEKIGGPVNP----LGPPVPHGPHGVPGPHG-PPGPPG 516
Score = 62 (26.9 bits), Expect = 8.9e-12, Sum P(2) = 8.9e-12
Identities = 16/67 (23%), Positives = 28/67 (41%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
IP VIG G I I+ +G + + G + +I+G + Q A ++I +
Sbjct: 322 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITD 381
Query: 468 FMAEAAA 474
+ A
Sbjct: 382 LLRSVQA 388
>ASPGD|ASPL0000075803 [details] [associations]
symbol:AN4546 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0043409 "negative regulation of MAPK cascade"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:BN001303 EMBL:AACD01000078
OrthoDB:EOG4Z65XM eggNOG:NOG315872 HOGENOM:HOG000184255
RefSeq:XP_662150.1 ProteinModelPortal:Q5B4I4
EnsemblFungi:CADANIAT00005892 GeneID:2872347 KEGG:ani:AN4546.2
OMA:AQANEKA Uniprot:Q5B4I4
Length = 542
Score = 154 (59.3 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 50/169 (29%), Positives = 85/169 (50%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R +V +++ G IIG+ G+ + + +ET + + PG +R + ++ A
Sbjct: 230 RAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVTG----------A 279
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPS-GTGGKVST------KLLVPASQAGSLIGKQGGTVK 245
+ G R + + GL AP G GG VS +LL+ +Q G++IG+QG +K
Sbjct: 280 LSGTARAYALVAKGL---LEGAPQMGMGGIVSNNGTHPIRLLISHNQMGTIIGRQGLKIK 336
Query: 246 SIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHL 294
IQ+AS VR++ +++ +R+VEV G G+ KA+ IG L
Sbjct: 337 HIQDASG--VRMVAQKEM--LPQSTERIVEVQGTPEGIEKAIWEIGKCL 381
Score = 106 (42.4 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 29/79 (36%), Positives = 39/79 (49%)
Query: 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQET-RGVPGEMTVEISGTASQVQTA 461
TQ + IP +IG G I+ IRRSSGA ++I + GE I G+A + A
Sbjct: 463 TQNISIPADMVGCIIGRGGTKITEIRRSSGARISIAKAPHDETGERMFTIMGSAQANEKA 522
Query: 462 QQLI-QNFMAEAAAPSQAQ 479
L+ +N AE SQ Q
Sbjct: 523 LYLLYENLEAEKTRRSQLQ 541
Score = 69 (29.3 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 128 GESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGPPGTTERAVMISAKEE 184
G R+L+ ++G+IIGR+G IK I + + R + + P +TER V + E
Sbjct: 311 GTHPIRLLISHNQMGTIIGRQGLKIKHIQDASGVRMVAQKEMLPQSTERIVEVQGTPE 368
Score = 66 (28.3 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 20/73 (27%), Positives = 38/73 (52%)
Query: 222 VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDAS 281
++ + +V + +AG +IGK G V +++ + V+ ++ +P DRV+ V G S
Sbjct: 227 LTLRAIVSSKEAGVIIGKAGKNVADLRDETG--VKAGVSKVVPGV---HDRVLTVTGALS 281
Query: 282 GVHKAMELIGSHL 294
G +A L+ L
Sbjct: 282 GTARAYALVAKGL 294
>UNIPROTKB|F1NP95 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02003296
EMBL:AADN02003297 EMBL:AADN02003298 EMBL:AADN02003299
EMBL:AADN02003300 EMBL:AADN02003301 EMBL:AADN02003302
EMBL:AADN02003303 EMBL:AADN02003304 EMBL:AADN02003305
EMBL:AADN02003306 EMBL:AADN02003307 EMBL:AADN02003308
EMBL:AADN02003309 EMBL:AADN02003310 EMBL:AADN02003311
EMBL:AADN02003312 EMBL:AADN02003313 EMBL:AADN02003314
EMBL:AADN02003315 IPI:IPI00814536 Ensembl:ENSGALT00000016012
ArrayExpress:F1NP95 Uniprot:F1NP95
Length = 345
Score = 206 (77.6 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 69/201 (34%), Positives = 104/201 (51%)
Query: 96 DIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKI 155
D+ P DS+ K+ E GST++ G G+ ++L+P+ GSIIG+ G+ I ++
Sbjct: 2 DLDPPDSR---KRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQL 58
Query: 156 VEETRARIKIL---DGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDGLDSDSS 212
+ET A IK+ D PGTTER +I E +++ + +R + V + S
Sbjct: 59 QKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAKTEPVSI 118
Query: 213 HAPSGTGG--KVS-TKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQ 269
P T ++ K++VP S AG +IGK G TVK+I E S V++ D LQ
Sbjct: 119 LQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPD--GINLQ 176
Query: 270 DDRVVEVVGDASGVHKAMELI 290
+ RVV V G+ KA+ELI
Sbjct: 177 E-RVVTVSGEPEQNRKAVELI 196
>ZFIN|ZDB-GENE-041121-12 [details] [associations]
symbol:zgc:101598 "zgc:101598" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-041121-12 GO:GO:0003723
eggNOG:NOG300923 HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 OrthoDB:EOG4X97H1 EMBL:BC085379
IPI:IPI00487369 RefSeq:NP_001007777.1 UniGene:Dr.76973
ProteinModelPortal:Q5RKQ3 SMR:Q5RKQ3 STRING:Q5RKQ3 GeneID:493616
KEGG:dre:493616 InParanoid:Q5RKQ3 NextBio:20865427
ArrayExpress:Q5RKQ3 Uniprot:Q5RKQ3
Length = 572
Score = 161 (61.7 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 49/161 (30%), Positives = 82/161 (50%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP + VG IIGR GE I +I E+ +I+I G +R ++ PES ++
Sbjct: 90 VPDKMVGFIIGRGGEQITRIQLESNCKIQIAADSGGMMDRPCTLTGT--PES-----IEQ 142
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
R+ +IVD + G ++L+PAS+ G +IGK G T+K +QE + V
Sbjct: 143 AKRLLGQIVDRCRNGPGFHSQMDGSSAVQEILIPASKVGLVIGKGGDTIKQLQERTG--V 200
Query: 256 RVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
+++ +D P+ D+ + + GD V +A EL+ +R+
Sbjct: 201 KMIMIQDDPM-PTGSDKPLRISGDPYKVQQARELVVEIIRE 240
Score = 138 (53.6 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 48/163 (29%), Positives = 81/163 (49%)
Query: 130 SVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGP-PGTTERAVMISAKEEPES 187
+V +L+PA KVG +IG+ G+ IK++ E T + I I D P P +++ + IS +P
Sbjct: 169 AVQEILIPASKVGLVIGKGGDTIKQLQERTGVKMIMIQDDPMPTGSDKPLRISG--DPYK 226
Query: 188 SLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSI 247
+ A + ++ + + G D S + G+ S + VP G +IG+ G +K I
Sbjct: 227 -VQQARELVVEIIREKDQG-DFRSGRSDFGSRLGSSIDVAVPRFAVGIVIGRNGEMIKKI 284
Query: 248 QEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
Q + VR+ + P + DRV +V+G A+ LI
Sbjct: 285 QNDAG--VRI---QFKPDDGISPDRVAQVMGQPERCQHAVHLI 322
Score = 98 (39.6 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 32/110 (29%), Positives = 49/110 (44%)
Query: 395 TPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEI 451
TP + +VT IP VIG G +I I + SGA V +Q P T I
Sbjct: 355 TPGGLQEVTYT--IPADKCGLVIGKGGETIKNINQQSGAHVELQRNPPPNTDPNVRTFSI 412
Query: 452 SGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSN 501
G+ Q++ A+QLI + + + MG ++ G +P+ +P N
Sbjct: 413 RGSPQQMEMARQLIDDKIGASG------MGGNSSFGLSPFTQGPATPHQN 456
Score = 81 (33.6 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 34/132 (25%), Positives = 54/132 (40%)
Query: 167 DGPPGTTERAVMISAKEEP---ESSLPPAMDGLL---RVHKRIVD-GLDSDSSHAPSGTG 219
DG RA I EP ++ P +D L KR +D G+ + GT
Sbjct: 22 DGFTDPFHRARQIKMGGEPLPHMNNSSPVVDASLYGYATQKRSLDEGVANQLGAMVHGTR 81
Query: 220 GKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGD 279
++ VP G +IG+ G + IQ SNC +++ A+ + DR + G
Sbjct: 82 AIITEDFKVPDKMVGFIIGRGGEQITRIQLESNCKIQI-AADSGGMM----DRPCTLTGT 136
Query: 280 ASGVHKAMELIG 291
+ +A L+G
Sbjct: 137 PESIEQAKRLLG 148
Score = 60 (26.2 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 15/65 (23%), Positives = 26/65 (40%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
+P VIG G I I+ +G + + G+ + ++ G + Q A LI
Sbjct: 265 VPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPDRVAQVMGQPERCQHAVHLINE 324
Query: 468 FMAEA 472
+ A
Sbjct: 325 LVQTA 329
>UNIPROTKB|Q9UNW9 [details] [associations]
symbol:NOVA2 "RNA-binding protein Nova-2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 EMBL:AF083898
GO:GO:0005634 GO:GO:0003723 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 KO:K14944 EMBL:U70477 EMBL:AC006540
IPI:IPI00156005 RefSeq:NP_002507.1 UniGene:Hs.375439 PDB:1DTJ
PDB:1EC6 PDBsum:1DTJ PDBsum:1EC6 ProteinModelPortal:Q9UNW9
SMR:Q9UNW9 STRING:Q9UNW9 PhosphoSite:Q9UNW9 DMDM:33516944
PRIDE:Q9UNW9 DNASU:4858 Ensembl:ENST00000263257 GeneID:4858
KEGG:hsa:4858 UCSC:uc002pdv.2 CTD:4858 GeneCards:GC19M046442
HGNC:HGNC:7887 HPA:HPA045607 MIM:601991 neXtProt:NX_Q9UNW9
PharmGKB:PA31689 InParanoid:Q9UNW9 OMA:TPPEVVC PhylomeDB:Q9UNW9
EvolutionaryTrace:Q9UNW9 GenomeRNAi:4858 NextBio:18718
ArrayExpress:Q9UNW9 Bgee:Q9UNW9 CleanEx:HS_NOVA2
Genevestigator:Q9UNW9 GermOnline:ENSG00000104967 Uniprot:Q9UNW9
Length = 492
Score = 189 (71.6 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 62/193 (32%), Positives = 97/193 (50%)
Query: 107 KQENEVNLAVGSTEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKIL 166
K+ E V T++ G GE ++L+P+ GSIIG+ G+ I ++ +ET A IK+
Sbjct: 10 KRPLETPPEVVCTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLS 69
Query: 167 ---DGPPGTTERAVMISAKEEPESSLPPAMDGLLR------VHKRIVDGLDSDSSHAPSG 217
D PGTTER ++ E +++ + +R +V+ L ++ P
Sbjct: 70 KSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDR 129
Query: 218 TGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVV 277
KL+VP S AG +IGK G TVK++ E S V++ ++ LQ+ RVV V
Sbjct: 130 AK---QAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL--SQKPEGINLQE-RVVTVS 183
Query: 278 GDASGVHKAMELI 290
G+ VHKA+ I
Sbjct: 184 GEPEQVHKAVSAI 196
Score = 65 (27.9 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG--VPGEMT--VEISGTASQVQT 460
++ +P + A++G G ++ + +GA + I + +G +PG V I+G+ + Q
Sbjct: 410 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISK-KGEFLPGTRNRRVTITGSPAATQA 468
Query: 461 AQQLI 465
AQ LI
Sbjct: 469 AQYLI 473
Score = 43 (20.2 bits), Expect = 8.2e-12, Sum P(2) = 8.2e-12
Identities = 19/55 (34%), Positives = 19/55 (34%)
Query: 452 SGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSNPGHAG 506
S AS V A N A AAA A A G P PP PG G
Sbjct: 302 SAAASGVLAAVAAGANPAAAAAANLLASYAGEAGAG--PAGGAAPPPPPPPGALG 354
>POMBASE|SPCC757.09c [details] [associations]
symbol:rnc1 "RNA-binding protein that suppresses
calcineurin deletion Rnc1" species:4896 "Schizosaccharomyces pombe"
[GO:0003729 "mRNA binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IGI]
[GO:0048255 "mRNA stabilization" evidence=IMP] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
PomBase:SPCC757.09c GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003729 GO:GO:0048255 GO:GO:0043409
HSSP:Q91WJ8 OrthoDB:EOG4Z65XM eggNOG:NOG315872 PIR:T41600
RefSeq:NP_587684.1 ProteinModelPortal:O74919 STRING:O74919
PRIDE:O74919 EnsemblFungi:SPCC757.09c.1 GeneID:2539434
KEGG:spo:SPCC757.09c HOGENOM:HOG000184255 OMA:NCESIAY
NextBio:20800596 Uniprot:O74919
Length = 398
Score = 145 (56.1 bits), Expect = 6.7e-14, Sum P(2) = 6.7e-14
Identities = 44/166 (26%), Positives = 83/166 (50%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R L+ ++ G IIG+ G+ + ++ T + + P +R + IS P
Sbjct: 97 RALLSTREAGIIIGKAGKNVAELRSTTNVKAGVTKAVPNVHDRVLTISG--------P-- 146
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVST----KLLVPASQAGSLIGKQGGTVKSIQ 248
++ ++R ++ I+D +S++ P GT +T +LL+ S GS+IG+ G +K IQ
Sbjct: 147 LENVVRAYRFIIDIFAKNSTN-PDGTPSDANTPRKLRLLIAHSLMGSIIGRNGLRIKLIQ 205
Query: 249 EASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHL 294
+ +C R++ ++D+ +R VE+ G +H A+ IG L
Sbjct: 206 DKCSC--RMIASKDM--LPQSTERTVEIHGTVDNLHAAIWEIGKCL 247
Score = 108 (43.1 bits), Expect = 6.7e-14, Sum P(2) = 6.7e-14
Identities = 38/126 (30%), Positives = 55/126 (43%)
Query: 347 YMPPPRQAESYYPPADLPPPMEKQPHQGISAYGREA-PVNV--HGSSNAQSTPSMITQ-- 401
Y P R + A P + P S EA P N +G+ +T Q
Sbjct: 260 YNPVSRLTQPLPSLASTASPQQVSPPAAPSTTSGEAIPENFVSYGAQVFPATQMPFLQQP 319
Query: 402 -VTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI-QETRGVPGEMTVEISGTASQVQ 459
VTQ + IP +IG G+ IS IRR+SG+ ++I +E GE I+GT + +
Sbjct: 320 KVTQNISIPADMVGCIIGRGGSKISEIRRTSGSKISIAKEPHDETGERMFTITGTHEENE 379
Query: 460 TAQQLI 465
A L+
Sbjct: 380 KALFLL 385
Score = 57 (25.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 221 KVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDA 280
+++ + L+ +AG +IGK G V ++ +N V A +P DRV+ + G
Sbjct: 93 QLTLRALLSTREAGIIIGKAGKNVAELRSTTNVKAGVTKA--VPNV---HDRVLTISGPL 147
Query: 281 SGVHKAMELI 290
V +A I
Sbjct: 148 ENVVRAYRFI 157
>UNIPROTKB|F6Y140 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
OMA:QASGNCH GeneTree:ENSGT00650000093048 EMBL:AAEX03012495
Ensembl:ENSCAFT00000029641 Uniprot:F6Y140
Length = 602
Score = 165 (63.1 bits), Expect = 7.2e-14, Sum P(2) = 7.2e-14
Identities = 47/163 (28%), Positives = 86/163 (52%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP VG IIGR GE I KI +++ +++I G ER+V ++ E +D
Sbjct: 7 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 66
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
++ + G D+++ G G V ++++PA +AG +IGK G T+K +QE + +
Sbjct: 67 IVSRGRGGPPGQFHDNANG--GQNGTVQ-EIMIPAGKAGLVIGKGGETIKQLQERAGVKM 123
Query: 256 RVL--GAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
++ G+++ V D+ + ++GD V +A E++ LR+
Sbjct: 124 ILIQDGSQNTNV-----DKPLRIIGDPYKVQQACEMVMDILRE 161
Score = 115 (45.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 57/240 (23%), Positives = 98/240 (40%)
Query: 61 EQVTEDQLTEDQVPEDHVPEDQ--VPEDHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGS 118
EQ+ + Q +D + + D +PE V PE + L + G
Sbjct: 21 EQINKIQ--QDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQ 78
Query: 119 TEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGPPGTT-ERA 176
G +V +++PA K G +IG+ GE IK++ E + I I DG T ++
Sbjct: 79 FHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKP 138
Query: 177 V-MISAKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGS 235
+ +I + + + MD +LR +R G D + S GG + VP G
Sbjct: 139 LRIIGDPYKVQQACEMVMD-ILR--ERDQGGF-GDRNEYGSRIGGGIDVP--VPRHSVGV 192
Query: 236 LIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLR 295
+IG+ G +K IQ + VR+ +D +++ ++G A +I L+
Sbjct: 193 VIGRSGEMIKKIQNDAG--VRIQFKQD---DGTGPEKIAHIMGPPDRCEHAARIINDLLQ 247
Score = 92 (37.4 bits), Expect = 7.2e-14, Sum P(2) = 7.2e-14
Identities = 32/106 (30%), Positives = 42/106 (39%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEISGTASQVQTAQQL 464
IP VIG G ++ I + +GA V I G P I G+ Q+ A+QL
Sbjct: 287 IPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQL 346
Query: 465 IQNFMAEAAAPSQAQMGASADQG----YNPYASMYGSPPSNPGHAG 506
I+ + P G G +NP G PP P HAG
Sbjct: 347 IEEKIEGPLCPVGPGPGGPGPAGPMGPFNPGPFNQG-PPGAPPHAG 391
Score = 62 (26.9 bits), Expect = 9.2e-11, Sum P(2) = 9.2e-11
Identities = 14/62 (22%), Positives = 27/62 (43%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
+P VIG +G I I+ +G + ++ G E I G + + A ++I +
Sbjct: 185 VPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIIND 244
Query: 468 FM 469
+
Sbjct: 245 LL 246
Score = 44 (20.5 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 32/161 (19%), Positives = 50/161 (31%)
Query: 345 PQYMPPPRQAESYYPPADLPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQ 404
P + PP+ + YP PP P++ +A A + S Q P +
Sbjct: 394 PPHQYPPQGWGNTYP--QWQPPAPHDPNKAAAAADPNAAWAAYYSHYYQQPPGPVPGPAP 451
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTA-SQVQTAQQ 463
P + + Y + I + PG + A + Q
Sbjct: 452 APAAPPAQGEPPQPPPAGQSDYTKAWEEYYKKIGQQPQQPGAPPQQDYTKAWEEYYKKQA 511
Query: 464 LIQNFMAEAAAP-SQAQMGASADQGYNPYASMYGSPPSNPG 503
+ A P SQ A+ + Y A+ YG P PG
Sbjct: 512 QVATGGGPGAPPGSQPDYSAAWAEYYRQQAAYYGQTPG-PG 551
Score = 38 (18.4 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 347 YMPPP-RQAESYYPP-ADLPPPMEKQPHQGISAYGREAPVNVHGSSNA 392
+ P P Q PP A PPP + P + Y + P H + A
Sbjct: 374 FNPGPFNQGPPGAPPHAGGPPPHQYPPQGWGNTYPQWQPPAPHDPNKA 421
Score = 37 (18.1 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 350 PPRQAESYYPPADLPPPM 367
PP S+ PPA + P +
Sbjct: 571 PPPPPFSFQPPATVHPAL 588
>UNIPROTKB|F1S0X8 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:CU914779
Ensembl:ENSSSCT00000006271 Uniprot:F1S0X8
Length = 548
Score = 165 (63.1 bits), Expect = 8.5e-14, Sum P(2) = 8.5e-14
Identities = 50/161 (31%), Positives = 83/161 (51%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP + VG IIGR GE I +I E+ +I+I G ER +++ PES ++
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGT--PES-----IEQ 136
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
R+ +IVD + G +LL+PAS+ G +IGK G T+K +QE + V
Sbjct: 137 AKRLLGQIVDRCRNGPGFHNDVDGSSTIQELLIPASKVGLVIGKGGETIKQLQERTG--V 194
Query: 256 RVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
+++ +D P+ D+ + + GD V +A E++ +R+
Sbjct: 195 KMVMIQDGPL-PTGADKPLRITGDPFKVQQAREMVLEIIRE 234
Score = 130 (50.8 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 51/170 (30%), Positives = 83/170 (48%)
Query: 128 GESVFR-MLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGP-PGTTERAVMISAKEE 184
G S + +L+PA KVG +IG+ GE IK++ E T + + I DGP P ++ + I+ +
Sbjct: 160 GSSTIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITG--D 217
Query: 185 PESSLPPAMDGLLRV--HKRIVD--GLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQ 240
P + A + +L + K D G+ D S S GG S ++ VP G +IG+
Sbjct: 218 P-FKVQQAREMVLEIIREKDQADFRGVRGDFS---SRMGGG-SIEVSVPRFAVGIVIGRN 272
Query: 241 GGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
G +K IQ + VR+ + P + +R +V+G A +I
Sbjct: 273 GEMIKKIQNDAG--VRI---QFKPDDGISPERAAQVMGPPDRCQHAAHVI 317
Score = 90 (36.7 bits), Expect = 8.5e-14, Sum P(2) = 8.5e-14
Identities = 30/110 (27%), Positives = 46/110 (41%)
Query: 395 TPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEI 451
TP I ++T +P VIG G +I I + SGA V +Q PG I
Sbjct: 350 TPGGIQEITYT--VPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGLRVFTI 407
Query: 452 SGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSN 501
G Q++ A+ LI + + +GA G +P++ +P N
Sbjct: 408 RGVPQQIEVARHLIDEKVGGSG------LGAPGAFGQSPFSQPPAAPHQN 451
Score = 64 (27.6 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 15/68 (22%), Positives = 28/68 (41%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQL 464
++ +P VIG G I I+ +G + + G+ E ++ G + Q A +
Sbjct: 257 EVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHV 316
Query: 465 IQNFMAEA 472
I + A
Sbjct: 317 ISELILTA 324
>UNIPROTKB|H9L011 [details] [associations]
symbol:LOC426023 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AADN02056329 Ensembl:ENSGALT00000021744 OMA:RALENKI
Uniprot:H9L011
Length = 195
Score = 186 (70.5 bits), Expect = 8.8e-14, P = 8.8e-14
Identities = 50/158 (31%), Positives = 92/158 (58%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER + ++ P +++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
++ ++ + + S +++ + + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 72 FAMII---DKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R + + G + + ++ I
Sbjct: 129 AQVQVAG-DMLPN---STERAITIAGIPQSIIECVKQI 162
Score = 81 (33.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 210 DSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQ 269
D+ G ++ +LL+ + GS+IGK+G +VK ++E S + + + P
Sbjct: 2 DTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP----- 55
Query: 270 DDRVVEVVGDASGVHKAMELI 290
+R++ + G + + KA +I
Sbjct: 56 -ERIITLAGPTNAIFKAFAMI 75
Score = 78 (32.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 389 SSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPG--E 446
SS ST + VT ++ +P S ++IG G I IR S+GA V + +P E
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNSTE 143
Query: 447 MTVEISGTA-SQVQTAQQL 464
+ I+G S ++ +Q+
Sbjct: 144 RAITIAGIPQSIIECVKQI 162
>ASPGD|ASPL0000045500 [details] [associations]
symbol:AN10257 species:162425 "Emericella nidulans"
[GO:0010834 "telomere maintenance via telomere shortening"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:BN001307 GO:GO:0003723
EnsemblFungi:CADANIAT00008760 OMA:ESENNAE Uniprot:C8VLW6
Length = 465
Score = 143 (55.4 bits), Expect = 9.7e-14, Sum P(2) = 9.7e-14
Identities = 58/215 (26%), Positives = 101/215 (46%)
Query: 88 VPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESV-FRMLVPAQKVGSIIG 146
VP+ P+ V E +Q + A +E++ P + R ++ +Q+ ++IG
Sbjct: 68 VPD--APKGGVSETQPIQSTASHG-EAAGNQSEQQRPQDESNWIHIRAVISSQEAATVIG 124
Query: 147 RKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDG 206
+ GE + +I + A+ + D G ER + +S P+ ++ A ++R +
Sbjct: 125 KGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSG---PQDAVAKAFGLIIRTLNN--EP 179
Query: 207 LDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVF 266
LD+ S+ A S T +LL+P GS+IGK G ++ IQ+AS R L A D
Sbjct: 180 LDAAST-AQSKT---YPLRLLIPHILIGSIIGKGGTRIREIQDASGA--R-LNASDA-CL 231
Query: 267 ALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVDR 301
L +R + ++G A VH A + L + L +R
Sbjct: 232 PLSTERSLVILGVADAVHIATYYVAVTLVEQLTER 266
Score = 111 (44.1 bits), Expect = 9.7e-14, Sum P(2) = 9.7e-14
Identities = 38/123 (30%), Positives = 53/123 (43%)
Query: 346 QYMPPPRQAESYYPPADLPPPMEKQPHQGISAYGREAPVNVHGSSN--AQSTPSMITQ-V 402
Q+ P P + + A P PHQ + YG G A +M Q +
Sbjct: 333 QHAPAPVAPQPMHYGAPQTPYAGAGPHQP-TPYGAPQAAQPRGGPTPAAPVGGAMPGQPL 391
Query: 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQ 462
TQQ+ IP A+IG GA I+ IR SG+ + I E + E V I+GT Q A
Sbjct: 392 TQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQENSNERLVTITGTQECNQMAL 451
Query: 463 QLI 465
++
Sbjct: 452 YML 454
>UNIPROTKB|F1PUD6 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:AAEX03000869 EMBL:AAEX03000868 Ensembl:ENSCAFT00000006989
Uniprot:F1PUD6
Length = 502
Score = 186 (70.5 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 58/176 (32%), Positives = 90/176 (51%)
Query: 124 PGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKIL---DGPPGTTERAVMIS 180
P GE ++L+P+ GSIIG+ G+ I ++ +ET A IK+ D PGTTER ++
Sbjct: 37 PAEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQ 96
Query: 181 AKEEPESSLPPAMDGLLR------VHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAG 234
E +++ + +R +V+ L ++ P KL+VP S AG
Sbjct: 97 GTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAK---QAKLIVPNSTAG 153
Query: 235 SLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+IGK G TVK++ E S V++ ++ LQ+ RVV V G+ VHKA+ I
Sbjct: 154 LIIGKGGATVKAVMEQSGAWVQL--SQKPEGINLQE-RVVTVSGEPEQVHKAVSAI 206
Score = 65 (27.9 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG--VPGEMT--VEISGTASQVQT 460
++ +P + A++G G ++ + +GA + I + +G +PG V I+G+ + Q
Sbjct: 420 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISK-KGEFLPGTRNRRVTITGSPAATQA 478
Query: 461 AQQLI 465
AQ LI
Sbjct: 479 AQYLI 483
Score = 43 (20.2 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 19/55 (34%), Positives = 19/55 (34%)
Query: 452 SGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSNPGHAG 506
S AS V A N A AAA A A G P PP PG G
Sbjct: 312 SAAASGVLAAVAAGANPAAAAAANLLASYAGEAGAG--PAGGAAPPPPPPPGALG 364
>UNIPROTKB|E1BVU6 [details] [associations]
symbol:LOC100858906 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:AADN02031620
EMBL:AADN02034412 EMBL:AADN02034413 EMBL:AADN02034414
IPI:IPI00682929 Ensembl:ENSGALT00000007004 Uniprot:E1BVU6
Length = 339
Score = 148 (57.2 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 48/158 (30%), Positives = 83/158 (52%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+ G E++ ARI I +G ER V I+ P ++ A
Sbjct: 17 RLLMHGKEVGSIIGKMGCLHVVTREQSGARINISEG--NCPERIVTITG---PTDAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
+ + + + + S++ + + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 72 F---AMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R V + G + + ++ I
Sbjct: 129 AQVQVAG-DMLPN---STERAVTISGTPDAIIQCVKQI 162
Score = 100 (40.3 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 28/96 (29%), Positives = 44/96 (45%)
Query: 371 PHQGISAYGREAPVNVHG-SSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRR 429
P + + + E N+ G SS ++P T ++ IP +IG G I+ IR+
Sbjct: 233 PGEKLPLHSSEEAQNLMGQSSGLDASPPASTH---ELTIPNDLIGCIIGRQGTKINEIRQ 289
Query: 430 SSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLI 465
SGA + I E + I+GT + + AQ LI
Sbjct: 290 MSGAQIKIANATEGSSERQITITGTPANISLAQYLI 325
Score = 62 (26.9 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 19/81 (23%), Positives = 36/81 (44%)
Query: 210 DSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQ 269
+S + G ++ +LL+ + GS+IGK G +E S + + + P
Sbjct: 2 ESKVSEGGLNVTLTIRLLMHGKEVGSIIGKMGCLHVVTREQSGARINI-SEGNCP----- 55
Query: 270 DDRVVEVVGDASGVHKAMELI 290
+R+V + G + KA +I
Sbjct: 56 -ERIVTITGPTDAIFKAFAMI 75
>MGI|MGI:1336214 [details] [associations]
symbol:Khsrp "KH-type splicing regulatory protein"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0030425 "dendrite"
evidence=ISO] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0051028 "mRNA transport" evidence=IEA] Reactome:REACT_78136
Reactome:REACT_88316 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS00178 PROSITE:PS50084 SMART:SM00322
MGI:MGI:1336214 GO:GO:0005829 GO:GO:0005634 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0006397 GO:GO:0006351
GO:GO:0003723 GO:GO:0051028 GO:GO:0010494 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8570 OMA:QASGNCH EMBL:AK156541
EMBL:CT571247 EMBL:BC064454 EMBL:BC108414 IPI:IPI00462934
RefSeq:NP_034743.3 UniGene:Mm.34296 HSSP:Q91WJ8
ProteinModelPortal:Q3U0V1 SMR:Q3U0V1 IntAct:Q3U0V1 STRING:Q3U0V1
PhosphoSite:Q3U0V1 PaxDb:Q3U0V1 PRIDE:Q3U0V1 DNASU:16549
Ensembl:ENSMUST00000007814 GeneID:16549 KEGG:mmu:16549
UCSC:uc008ddr.2 GeneTree:ENSGT00650000093048 InParanoid:Q3U0V1
OrthoDB:EOG451DQX NextBio:290019 Bgee:Q3U0V1 CleanEx:MM_KHSRP
Genevestigator:Q3U0V1 Uniprot:Q3U0V1
Length = 748
Score = 165 (63.1 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 47/163 (28%), Positives = 86/163 (52%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP VG IIGR GE I KI +++ +++I G ER+V ++ E +D
Sbjct: 152 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 211
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
++ + G D+++ G G V ++++PA +AG +IGK G T+K +QE + +
Sbjct: 212 IVSRGRGGPPGQFHDNANG--GQNGTVQ-EIMIPAGKAGLVIGKGGETIKQLQERAGVKM 268
Query: 256 RVL--GAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
++ G+++ V D+ + ++GD V +A E++ LR+
Sbjct: 269 ILIQDGSQNTNV-----DKPLRIIGDPYKVQQACEMVMDILRE 306
Score = 116 (45.9 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 57/240 (23%), Positives = 98/240 (40%)
Query: 61 EQVTEDQLTEDQVPEDHVPEDQ--VPEDHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGS 118
EQ+ + Q +D + + D +PE V PE + L + G
Sbjct: 166 EQINKIQ--QDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQ 223
Query: 119 TEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGPPGTT-ERA 176
G +V +++PA K G +IG+ GE IK++ E + I I DG T ++
Sbjct: 224 FHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKP 283
Query: 177 V-MISAKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGS 235
+ +I + + + MD +LR +R G D + S GG + VP G
Sbjct: 284 LRIIGDPYKVQQACEMVMD-ILR--ERDQGGF-GDRNEYGSRVGGGIDVP--VPRHSVGV 337
Query: 236 LIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLR 295
+IG+ G +K IQ + VR+ +D +++ ++G A +I L+
Sbjct: 338 VIGRSGEMIKKIQNDAG--VRIQFKQD---DGTGPEKIAHIMGPPDRCEHAARIINDLLQ 392
Score = 93 (37.8 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 32/106 (30%), Positives = 42/106 (39%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEISGTASQVQTAQQL 464
IP VIG G ++ I + +GA V I G P I G+ Q+ A+QL
Sbjct: 432 IPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHAKQL 491
Query: 465 IQNFMAEAAAPSQAQMGASADQG----YNPYASMYGSPPSNPGHAG 506
I+ + P G G +NP G PP P HAG
Sbjct: 492 IEEKIEGPLCPVGPGPGGPGPAGPMGPFNPGPFNQG-PPGAPPHAG 536
Score = 63 (27.2 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 16/75 (21%), Positives = 30/75 (40%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
+P VIG +G I I+ +G + ++ G E I G + + A ++I +
Sbjct: 330 VPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIIND 389
Query: 468 FMAEAAAPSQAQMGA 482
+ + GA
Sbjct: 390 LLQSLRSGPPGPPGA 404
Score = 39 (18.8 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 473 AAP-SQAQMGASADQGYNPYASMYGSPPSNPG 503
A P SQ A+ + Y A+ YG P PG
Sbjct: 667 APPGSQPDYSAAWAEYYRQQAAYYGQTPG-PG 697
Score = 38 (18.4 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 347 YMPPP-RQAESYYPP-ADLPPPMEKQPHQGISAYGREAPVNVHGSSNA 392
+ P P Q PP A PPP + P + Y + P H + A
Sbjct: 519 FNPGPFNQGPPGAPPHAGGPPPHQYPPQGWGNTYPQWQPPAPHDPNKA 566
Score = 37 (18.1 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 350 PPRQAESYYPPADLPPPM 367
PP S+ PPA + P +
Sbjct: 717 PPPPPFSFQPPATVHPAL 734
>UNIPROTKB|F8W0G4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021465
ProteinModelPortal:F8W0G4 SMR:F8W0G4 PRIDE:F8W0G4
Ensembl:ENST00000551104 ArrayExpress:F8W0G4 Bgee:F8W0G4
Uniprot:F8W0G4
Length = 158
Score = 185 (70.2 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 49/146 (33%), Positives = 87/146 (59%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER + ++ P +++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
++ ++ + + S +++ + + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 72 FAMII---DKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVG 278
V+V G + LP +R + + G
Sbjct: 129 AQVQVAG-DMLPN---STERAITIAG 150
Score = 81 (33.6 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 210 DSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQ 269
D+ G ++ +LL+ + GS+IGK+G +VK ++E S + + + P
Sbjct: 2 DTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP----- 55
Query: 270 DDRVVEVVGDASGVHKAMELI 290
+R++ + G + + KA +I
Sbjct: 56 -ERIITLAGPTNAIFKAFAMI 75
Score = 77 (32.2 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 22/72 (30%), Positives = 34/72 (47%)
Query: 389 SSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPG--E 446
SS ST + VT ++ +P S ++IG G I IR S+GA V + +P E
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNSTE 143
Query: 447 MTVEISGTASQV 458
+ I+G +
Sbjct: 144 RAITIAGIPQSI 155
>UNIPROTKB|F1MHR6 [details] [associations]
symbol:LOC505564 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:DAAA02019565 EMBL:DAAA02019566
IPI:IPI00701919 Ensembl:ENSBTAT00000027991 Uniprot:F1MHR6
Length = 708
Score = 165 (63.1 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 47/163 (28%), Positives = 86/163 (52%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP VG IIGR GE I KI +++ +++I G ER+V ++ E +D
Sbjct: 112 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 171
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
++ + G D+++ G G V ++++PA +AG +IGK G T+K +QE + +
Sbjct: 172 IVSRGRGGPPGQFHDNANG--GQNGTVQ-EIMIPAGKAGLVIGKGGETIKQLQERAGVKM 228
Query: 256 RVL--GAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
++ G+++ V D+ + ++GD V +A E++ LR+
Sbjct: 229 ILIQDGSQNTNV-----DKPLRIIGDPYKVQQACEMVMDILRE 266
Score = 115 (45.5 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 57/240 (23%), Positives = 98/240 (40%)
Query: 61 EQVTEDQLTEDQVPEDHVPEDQ--VPEDHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGS 118
EQ+ + Q +D + + D +PE V PE + L + G
Sbjct: 126 EQINKIQ--QDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQ 183
Query: 119 TEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGPPGTT-ERA 176
G +V +++PA K G +IG+ GE IK++ E + I I DG T ++
Sbjct: 184 FHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKP 243
Query: 177 V-MISAKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGS 235
+ +I + + + MD +LR +R G D + S GG + VP G
Sbjct: 244 LRIIGDPYKVQQACEMVMD-ILR--ERDQGGF-GDRNEYGSRIGGGIDVP--VPRHSVGV 297
Query: 236 LIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLR 295
+IG+ G +K IQ + VR+ +D +++ ++G A +I L+
Sbjct: 298 VIGRSGEMIKKIQNDAG--VRIQFKQD---DGTGPEKIAHIMGPPDRCEHAARIINDLLQ 352
Score = 92 (37.4 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 32/106 (30%), Positives = 42/106 (39%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEISGTASQVQTAQQL 464
IP VIG G ++ I + +GA V I G P I G+ Q+ A+QL
Sbjct: 392 IPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQL 451
Query: 465 IQNFMAEAAAPSQAQMGASADQG----YNPYASMYGSPPSNPGHAG 506
I+ + P G G +NP G PP P HAG
Sbjct: 452 IEEKIEGPLCPVGPGPGGPGPAGPMGPFNPGPFNQG-PPGAPPHAG 496
Score = 62 (26.9 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 14/62 (22%), Positives = 27/62 (43%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
+P VIG +G I I+ +G + ++ G E I G + + A ++I +
Sbjct: 290 VPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIIND 349
Query: 468 FM 469
+
Sbjct: 350 LL 351
Score = 39 (18.8 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 473 AAP-SQAQMGASADQGYNPYASMYGSPPSNPG 503
A P SQ A+ + Y A+ YG P PG
Sbjct: 627 APPGSQPDYSAAWAEYYRQQAAYYGQTPG-PG 657
Score = 38 (18.4 bits), Expect = 4.8e-08, Sum P(3) = 4.8e-08
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 347 YMPPP-RQAESYYPP-ADLPPPMEKQPHQGISAYGREAPVNVHGSSNA 392
+ P P Q PP A PPP + P + Y + P H + A
Sbjct: 479 FNPGPFNQGPPGAPPHAGGPPPHQYPPQGWGNTYPQWQPPAPHDPNKA 526
Score = 37 (18.1 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 350 PPRQAESYYPPADLPPPM 367
PP S+ PPA + P +
Sbjct: 677 PPPPPFSFQPPATVHPAL 694
>UNIPROTKB|Q92945 [details] [associations]
symbol:KHSRP "Far upstream element-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005654 GO:GO:0006355 GO:GO:0003677
GO:GO:0006397 GO:GO:0006351 GO:GO:0003723 GO:GO:0051028
GO:GO:0000375 eggNOG:NOG300923 HOGENOM:HOG000231552
HOVERGEN:HBG000625 KO:K13210 InterPro:IPR015096 Pfam:PF09005
CTD:8570 EMBL:U94832 EMBL:AC011491 EMBL:AC011539 EMBL:BC085004
EMBL:AF093747 EMBL:AF093745 EMBL:AF093748 EMBL:U69126 EMBL:AB209662
IPI:IPI00479786 IPI:IPI00855957 RefSeq:NP_003676.2
UniGene:Hs.727344 PDB:2HH2 PDB:2HH3 PDB:2JVZ PDB:2OPU PDB:2OPV
PDB:4B8T PDBsum:2HH2 PDBsum:2HH3 PDBsum:2JVZ PDBsum:2OPU
PDBsum:2OPV PDBsum:4B8T ProteinModelPortal:Q92945 SMR:Q92945
DIP:DIP-48484N IntAct:Q92945 STRING:Q92945 PhosphoSite:Q92945
DMDM:160380711 REPRODUCTION-2DPAGE:Q92945 PaxDb:Q92945 PRIDE:Q92945
Ensembl:ENST00000398148 GeneID:8570 KEGG:hsa:8570 UCSC:uc002mer.4
GeneCards:GC19M006413 H-InvDB:HIX0040083 HGNC:HGNC:6316
HPA:HPA034739 MIM:603445 neXtProt:NX_Q92945 PharmGKB:PA30097
InParanoid:Q92945 OMA:QASGNCH PhylomeDB:Q92945 ChEMBL:CHEMBL1795105
ChiTaRS:KHSRP EvolutionaryTrace:Q92945 GenomeRNAi:8570
NextBio:32149 PMAP-CutDB:Q92945 ArrayExpress:Q92945 Bgee:Q92945
CleanEx:HS_KHSRP Genevestigator:Q92945 GermOnline:ENSG00000088247
Uniprot:Q92945
Length = 711
Score = 165 (63.1 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 47/163 (28%), Positives = 86/163 (52%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP VG IIGR GE I KI +++ +++I G ER+V ++ E +D
Sbjct: 151 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 210
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
++ + G D+++ G G V ++++PA +AG +IGK G T+K +QE + +
Sbjct: 211 IVSRGRGGPPGQFHDNANG--GQNGTVQ-EIMIPAGKAGLVIGKGGETIKQLQERAGVKM 267
Query: 256 RVL--GAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
++ G+++ V D+ + ++GD V +A E++ LR+
Sbjct: 268 ILIQDGSQNTNV-----DKPLRIIGDPYKVQQACEMVMDILRE 305
Score = 115 (45.5 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 57/240 (23%), Positives = 98/240 (40%)
Query: 61 EQVTEDQLTEDQVPEDHVPEDQ--VPEDHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGS 118
EQ+ + Q +D + + D +PE V PE + L + G
Sbjct: 165 EQINKIQ--QDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQ 222
Query: 119 TEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGPPGTT-ERA 176
G +V +++PA K G +IG+ GE IK++ E + I I DG T ++
Sbjct: 223 FHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKP 282
Query: 177 V-MISAKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGS 235
+ +I + + + MD +LR +R G D + S GG + VP G
Sbjct: 283 LRIIGDPYKVQQACEMVMD-ILR--ERDQGGF-GDRNEYGSRIGGGIDVP--VPRHSVGV 336
Query: 236 LIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLR 295
+IG+ G +K IQ + VR+ +D +++ ++G A +I L+
Sbjct: 337 VIGRSGEMIKKIQNDAG--VRIQFKQD---DGTGPEKIAHIMGPPDRCEHAARIINDLLQ 391
Score = 92 (37.4 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 32/106 (30%), Positives = 42/106 (39%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEISGTASQVQTAQQL 464
IP VIG G ++ I + +GA V I G P I G+ Q+ A+QL
Sbjct: 431 IPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQL 490
Query: 465 IQNFMAEAAAPSQAQMGASADQG----YNPYASMYGSPPSNPGHAG 506
I+ + P G G +NP G PP P HAG
Sbjct: 491 IEEKIEGPLCPVGPGPGGPGPAGPMGPFNPGPFNQG-PPGAPPHAG 535
Score = 62 (26.9 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 14/62 (22%), Positives = 27/62 (43%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
+P VIG +G I I+ +G + ++ G E I G + + A ++I +
Sbjct: 329 VPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIIND 388
Query: 468 FM 469
+
Sbjct: 389 LL 390
Score = 41 (19.5 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 15/48 (31%), Positives = 19/48 (39%)
Query: 347 YMPPP-RQAESYYPP-ADLPPPMEKQPHQGISAYGREAPVNVHGSSNA 392
+ P P Q PP A PPP + P + Y + P H S A
Sbjct: 518 FNPGPFNQGPPGAPPHAGGPPPHQYPPQGWGNTYPQWQPPAPHDPSKA 565
Score = 39 (18.8 bits), Expect = 1.9e-10, Sum P(3) = 1.9e-10
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 473 AAP-SQAQMGASADQGYNPYASMYGSPPSNPG 503
A P SQ A+ + Y A+ YG P PG
Sbjct: 666 APPGSQPDYSAAWAEYYRQQAAYYGQTPG-PG 696
>UNIPROTKB|E2QVT3 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
Ensembl:ENSCAFT00000029641 Uniprot:E2QVT3
Length = 743
Score = 165 (63.1 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 47/163 (28%), Positives = 86/163 (52%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP VG IIGR GE I KI +++ +++I G ER+V ++ E +D
Sbjct: 148 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 207
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
++ + G D+++ G G V ++++PA +AG +IGK G T+K +QE + +
Sbjct: 208 IVSRGRGGPPGQFHDNANG--GQNGTVQ-EIMIPAGKAGLVIGKGGETIKQLQERAGVKM 264
Query: 256 RVL--GAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
++ G+++ V D+ + ++GD V +A E++ LR+
Sbjct: 265 ILIQDGSQNTNV-----DKPLRIIGDPYKVQQACEMVMDILRE 302
Score = 115 (45.5 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 57/240 (23%), Positives = 98/240 (40%)
Query: 61 EQVTEDQLTEDQVPEDHVPEDQ--VPEDHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGS 118
EQ+ + Q +D + + D +PE V PE + L + G
Sbjct: 162 EQINKIQ--QDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQ 219
Query: 119 TEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGPPGTT-ERA 176
G +V +++PA K G +IG+ GE IK++ E + I I DG T ++
Sbjct: 220 FHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKP 279
Query: 177 V-MISAKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGS 235
+ +I + + + MD +LR +R G D + S GG + VP G
Sbjct: 280 LRIIGDPYKVQQACEMVMD-ILR--ERDQGGF-GDRNEYGSRIGGGIDVP--VPRHSVGV 333
Query: 236 LIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLR 295
+IG+ G +K IQ + VR+ +D +++ ++G A +I L+
Sbjct: 334 VIGRSGEMIKKIQNDAG--VRIQFKQD---DGTGPEKIAHIMGPPDRCEHAARIINDLLQ 388
Score = 92 (37.4 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 32/106 (30%), Positives = 42/106 (39%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEISGTASQVQTAQQL 464
IP VIG G ++ I + +GA V I G P I G+ Q+ A+QL
Sbjct: 428 IPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQL 487
Query: 465 IQNFMAEAAAPSQAQMGASADQG----YNPYASMYGSPPSNPGHAG 506
I+ + P G G +NP G PP P HAG
Sbjct: 488 IEEKIEGPLCPVGPGPGGPGPAGPMGPFNPGPFNQG-PPGAPPHAG 532
Score = 62 (26.9 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 14/62 (22%), Positives = 27/62 (43%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
+P VIG +G I I+ +G + ++ G E I G + + A ++I +
Sbjct: 326 VPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIIND 385
Query: 468 FM 469
+
Sbjct: 386 LL 387
Score = 44 (20.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 32/161 (19%), Positives = 50/161 (31%)
Query: 345 PQYMPPPRQAESYYPPADLPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQ 404
P + PP+ + YP PP P++ +A A + S Q P +
Sbjct: 535 PPHQYPPQGWGNTYP--QWQPPAPHDPNKAAAAADPNAAWAAYYSHYYQQPPGPVPGPAP 592
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTA-SQVQTAQQ 463
P + + Y + I + PG + A + Q
Sbjct: 593 APAAPPAQGEPPQPPPAGQSDYTKAWEEYYKKIGQQPQQPGAPPQQDYTKAWEEYYKKQA 652
Query: 464 LIQNFMAEAAAP-SQAQMGASADQGYNPYASMYGSPPSNPG 503
+ A P SQ A+ + Y A+ YG P PG
Sbjct: 653 QVATGGGPGAPPGSQPDYSAAWAEYYRQQAAYYGQTPG-PG 692
Score = 38 (18.4 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 347 YMPPP-RQAESYYPP-ADLPPPMEKQPHQGISAYGREAPVNVHGSSNA 392
+ P P Q PP A PPP + P + Y + P H + A
Sbjct: 515 FNPGPFNQGPPGAPPHAGGPPPHQYPPQGWGNTYPQWQPPAPHDPNKA 562
Score = 37 (18.1 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 350 PPRQAESYYPPADLPPPM 367
PP S+ PPA + P +
Sbjct: 712 PPPPPFSFQPPATVHPAL 729
>UNIPROTKB|F1SBT6 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:CU929921
Ensembl:ENSSSCT00000014785 Uniprot:F1SBT6
Length = 747
Score = 165 (63.1 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 47/163 (28%), Positives = 86/163 (52%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP VG IIGR GE I KI +++ +++I G ER+V ++ E +D
Sbjct: 151 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 210
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
++ + G D+++ G G V ++++PA +AG +IGK G T+K +QE + +
Sbjct: 211 IVSRGRGGPPGQFHDNANG--GQNGTVQ-EIMIPAGKAGLVIGKGGETIKQLQERAGVKM 267
Query: 256 RVL--GAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
++ G+++ V D+ + ++GD V +A E++ LR+
Sbjct: 268 ILIQDGSQNTNV-----DKPLRIIGDPYKVQQACEMVMDILRE 305
Score = 115 (45.5 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 57/240 (23%), Positives = 98/240 (40%)
Query: 61 EQVTEDQLTEDQVPEDHVPEDQ--VPEDHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGS 118
EQ+ + Q +D + + D +PE V PE + L + G
Sbjct: 165 EQINKIQ--QDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQ 222
Query: 119 TEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGPPGTT-ERA 176
G +V +++PA K G +IG+ GE IK++ E + I I DG T ++
Sbjct: 223 FHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKP 282
Query: 177 V-MISAKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGS 235
+ +I + + + MD +LR +R G D + S GG + VP G
Sbjct: 283 LRIIGDPYKVQQACEMVMD-ILR--ERDQGGF-GDRNEYGSRIGGGIDVP--VPRHSVGV 336
Query: 236 LIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLR 295
+IG+ G +K IQ + VR+ +D +++ ++G A +I L+
Sbjct: 337 VIGRSGEMIKKIQNDAG--VRIQFKQD---DGTGPEKIAHIMGPPDRCEHAARIINDLLQ 391
Score = 92 (37.4 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 32/106 (30%), Positives = 42/106 (39%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEISGTASQVQTAQQL 464
IP VIG G ++ I + +GA V I G P I G+ Q+ A+QL
Sbjct: 431 IPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQL 490
Query: 465 IQNFMAEAAAPSQAQMGASADQG----YNPYASMYGSPPSNPGHAG 506
I+ + P G G +NP G PP P HAG
Sbjct: 491 IEEKIEGPLCPVGPGPGGPGPAGPMGPFNPGPFNQG-PPGAPPHAG 535
Score = 62 (26.9 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
Identities = 14/62 (22%), Positives = 27/62 (43%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
+P VIG +G I I+ +G + ++ G E I G + + A ++I +
Sbjct: 329 VPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIIND 388
Query: 468 FM 469
+
Sbjct: 389 LL 390
Score = 39 (18.8 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 473 AAP-SQAQMGASADQGYNPYASMYGSPPSNPG 503
A P SQ A+ + Y A+ YG P PG
Sbjct: 666 APPGSQPDYSAAWAEYYRQQAAYYGQTPG-PG 696
Score = 38 (18.4 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 347 YMPPP-RQAESYYPP-ADLPPPMEKQPHQGISAYGREAPVNVHGSSNA 392
+ P P Q PP A PPP + P + Y + P H + A
Sbjct: 518 FNPGPFNQGPPGAPPHAGGPPPHQYPPQGWGNTYPQWQPPAPHDPNKA 565
Score = 37 (18.1 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 350 PPRQAESYYPPADLPPPM 367
PP S+ PPA + P +
Sbjct: 716 PPPPPFSFQPPATVHPAL 733
>CGD|CAL0000592 [details] [associations]
symbol:orf19.5627 species:5476 "Candida albicans" [GO:0000784
"nuclear chromosome, telomeric region" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IEA]
[GO:0006469 "negative regulation of protein kinase activity"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0007004 "telomere maintenance via telomerase"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 CGD:CAL0000592 GO:GO:0003723 EMBL:AACQ01000034
eggNOG:NOG315872 RefSeq:XP_719187.1 ProteinModelPortal:Q5ABS3
GeneID:3639231 KEGG:cal:CaO19.5627 Uniprot:Q5ABS3
Length = 368
Score = 146 (56.5 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 52/231 (22%), Positives = 98/231 (42%)
Query: 68 LTEDQVPEDHVPEDQV-PEDHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGW 126
+TE + E++ PE + Q + Q Q+ + + ++ P
Sbjct: 1 MTESLFDTNFTSENESKPEPTQQQQQQSTQQTSQQQQQQQPSSSTLTTSIVDQSSTLPSL 60
Query: 127 PGESV------FRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMIS 180
+S +R+LV A++ G +IG G+ I I ET + I PG+ ER + +S
Sbjct: 61 QDKSNIDALINYRVLVSAKEAGCLIGTNGQVIDSIRNETNTKAGISRLIPGSHERILTVS 120
Query: 181 AK-EEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGK 239
K ++ +L L+ + + + T +LL+P SQ G+LIG
Sbjct: 121 GKLDDCAKALSYFAQALINANIESYNYFPLKQLSSTPNTEETTILRLLIPNSQMGTLIGS 180
Query: 240 QGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+G ++ +Q N I + LP ++R+VE+ G ++ ++ +I
Sbjct: 181 KGARIQQLQNNFN-ISMIASKSFLPG---SNERLVELQGTVDDLYDSLRII 227
Score = 102 (41.0 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 27/89 (30%), Positives = 44/89 (49%)
Query: 384 VNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGV 443
+N + ++N + S + T + P A+IG G+ I +R+ SGA + I E
Sbjct: 269 INNNNNNNNNTHGSGGNKTTDTISFPNDIVGALIGKRGSRIDGVRKVSGAMIAISEAIEG 328
Query: 444 PGEMTVEISGTASQVQTAQQLI-QNFMAE 471
E I+G++ V A+Q+I QNF E
Sbjct: 329 ENERVFTITGSSHAVDKAKQMIYQNFKRE 357
>UNIPROTKB|F1MS84 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:DAAA02047389 IPI:IPI00703570 Ensembl:ENSBTAT00000017485
Uniprot:F1MS84
Length = 464
Score = 183 (69.5 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 57/172 (33%), Positives = 89/172 (51%)
Query: 128 GESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKIL---DGPPGTTERAVMISAKEE 184
GE ++L+P+ GSIIG+ G+ I ++ +ET A IK+ D PGTTER ++ E
Sbjct: 3 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAE 62
Query: 185 PESSLPPAMDGLLR------VHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIG 238
+++ + +R +V+ L ++ P KL+VP S AG +IG
Sbjct: 63 ALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAK---QAKLIVPNSTAGLIIG 119
Query: 239 KQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
K G TVK++ E S V++ ++ LQ+ RVV V G+ VHKA+ I
Sbjct: 120 KGGATVKAVMEQSGAWVQL--SQKPEGINLQE-RVVTVSGEPEQVHKAVSAI 168
Score = 65 (27.9 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG--VPGEMT--VEISGTASQVQT 460
++ +P + A++G G ++ + +GA + I + +G +PG V I+G+ + Q
Sbjct: 382 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISK-KGEFLPGTRNRRVTITGSPAATQA 440
Query: 461 AQQLI 465
AQ LI
Sbjct: 441 AQYLI 445
Score = 43 (20.2 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 19/55 (34%), Positives = 19/55 (34%)
Query: 452 SGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSNPGHAG 506
S AS V A N A AAA A A G P PP PG G
Sbjct: 274 SAAASGVLAAVAAGANPAAAAAANLLASYAGEAGAG--PAGGAAPPPPPPPGALG 326
>UNIPROTKB|E1BX03 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:AADN02012752
IPI:IPI00679838 Ensembl:ENSGALT00000014525 ArrayExpress:E1BX03
Uniprot:E1BX03
Length = 645
Score = 168 (64.2 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 53/158 (33%), Positives = 83/158 (52%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKI---LDGPPGTTERAVMISAKEEPESSLPPA 192
VP VG IIGR GE I +I +E+ +I+I LD G ER+ M++ E S
Sbjct: 104 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPALDSG-GLPERSCMLTGTPESVQSAKRL 162
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
+D + V K G + H G G V ++++PAS+AG +IGK G T+K +QE +
Sbjct: 163 LDQI--VEK----GRPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAG 215
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+++ +D P D+ + + GD V +A E++
Sbjct: 216 --VKMVMIQDGPQNT-GADKPLRITGDPYKVQQAKEMV 250
Score = 142 (55.0 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 47/171 (27%), Positives = 79/171 (46%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGPPGT-TERAVMISAKEE 184
PG +V +++PA K G +IG+ GE IK++ E + + I DGP T ++ + I+ +
Sbjct: 182 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG--D 239
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
P + A + +L + R G + S GG + +P G +IG+ G +
Sbjct: 240 PYK-VQQAKEMVLELI-RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMI 297
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLR 295
K IQ + VR+ + P DR+ ++ G A E+I LR
Sbjct: 298 KKIQNDAG--VRI---QFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLR 343
Score = 85 (35.0 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 28/101 (27%), Positives = 41/101 (40%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEISGTASQVQTAQQL 464
+P +IG G +I I + SGA + +Q P I GT Q+ A+QL
Sbjct: 383 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKMFTIRGTPQQIDYARQL 442
Query: 465 IQNFMAEAAAPSQAQMGASADQGYNPYASMYG--SPPSNPG 503
I+ + P +G G P+ + G PP PG
Sbjct: 443 IEEKIGGPVNP----LGPPVPHG--PHGVVPGPHGPPGPPG 477
Score = 67 (28.6 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 18/80 (22%), Positives = 32/80 (40%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
IP VIG G I I+ +G + + G + +I+G + Q A ++I +
Sbjct: 281 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITD 340
Query: 468 FMAEAAAPSQAQMGASADQG 487
+ A + G +G
Sbjct: 341 LLRSVQAGNPGGPGGPGGRG 360
>RGD|1307004 [details] [associations]
symbol:Fubp3 "far upstream element (FUSE) binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=ISO] [GO:0010628 "positive
regulation of gene expression" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8939 OrthoDB:EOG4X97H1
EMBL:DQ144645 IPI:IPI00394110 RefSeq:NP_001034426.1
UniGene:Rn.199412 ProteinModelPortal:Q2QC85 SMR:Q2QC85
GeneID:362106 KEGG:rno:362106 UCSC:RGD:1307004 InParanoid:Q2QC85
NextBio:678673 Genevestigator:Q2QC85 Uniprot:Q2QC85
Length = 569
Score = 164 (62.8 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 50/161 (31%), Positives = 83/161 (51%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP + VG IIGR GE I +I E+ +I+I G ER +++ PES ++
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGT--PES-----IEQ 136
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
R+ +IVD + G +LL+PAS+ G +IGK G T+K +QE + V
Sbjct: 137 AKRLLGQIVDRCRNGPGFHNDIDGNSTIQELLIPASKVGLVIGKGGETIKQLQERTG--V 194
Query: 256 RVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
+++ +D P+ D+ + + GD V +A E++ +R+
Sbjct: 195 KMVMIQDGPL-PTGADKPLRITGDPFKVQQAREMVLEIIRE 234
Score = 134 (52.2 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 51/170 (30%), Positives = 84/170 (49%)
Query: 128 GESVFR-MLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGP-PGTTERAVMISAKEE 184
G S + +L+PA KVG +IG+ GE IK++ E T + + I DGP P ++ + I+ +
Sbjct: 160 GNSTIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITG--D 217
Query: 185 PESSLPPAMDGLLRV--HKRIVD--GLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQ 240
P + A + +L + K D G+ SD + S GG S ++ VP G +IG+
Sbjct: 218 P-FKVQQAREMVLEIIREKDQADFRGVRSDFT---SRAGGG-SIEVSVPRFVVGIVIGRN 272
Query: 241 GGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
G +K IQ + VR+ + P + +R +V+G A +I
Sbjct: 273 GEMIKKIQNGTG--VRI---QFKPDDGISPERAAQVMGPPDRCQHAARII 317
Score = 87 (35.7 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 30/110 (27%), Positives = 46/110 (41%)
Query: 395 TPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEI 451
TP I ++T +P VIG G +I I + SGA V +Q P I
Sbjct: 350 TPGGIQEITYT--VPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTI 407
Query: 452 SGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSN 501
G Q++ A+ LI + A+ +GA G +P++ +P N
Sbjct: 408 RGAPQQIEVARHLIDEKVGGAS------LGAPTAFGQSPFSQPPAAPHQN 451
Score = 67 (28.6 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 15/68 (22%), Positives = 29/68 (42%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQL 464
++ +P VIG G I I+ +G + + G+ E ++ G + Q A ++
Sbjct: 257 EVSVPRFVVGIVIGRNGEMIKKIQNGTGVRIQFKPDDGISPERAAQVMGPPDRCQHAARI 316
Query: 465 IQNFMAEA 472
I + A
Sbjct: 317 INELILTA 324
Score = 37 (18.1 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 17/69 (24%), Positives = 23/69 (33%)
Query: 344 NPQYMPPPRQAESYYPPADLPPPMEK---QPHQGISAYGREAPVNVHGSSNAQSTPSMIT 400
+P PP ++ +PP P K PH G A + S Q+
Sbjct: 439 SPFSQPPAAPHQNTFPPRAFPNIAAKVNGNPHS-TPVSGPPAFLTQGWGSTYQAWQQPTQ 497
Query: 401 QVTQQMQIP 409
QV Q P
Sbjct: 498 QVPSQQSQP 506
>UNIPROTKB|G3V829 [details] [associations]
symbol:Fubp3 "RCG45587" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 EMBL:CH474001
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
EMBL:AC108321 Ensembl:ENSRNOT00000021871 Uniprot:G3V829
Length = 569
Score = 164 (62.8 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 50/161 (31%), Positives = 83/161 (51%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP + VG IIGR GE I +I E+ +I+I G ER +++ PES ++
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGT--PES-----IEQ 136
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
R+ +IVD + G +LL+PAS+ G +IGK G T+K +QE + V
Sbjct: 137 AKRLLGQIVDRCRNGPGFHNDIDGNSTIQELLIPASKVGLVIGKGGETIKQLQERTG--V 194
Query: 256 RVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
+++ +D P+ D+ + + GD V +A E++ +R+
Sbjct: 195 KMVMIQDGPL-PTGADKPLRITGDPFKVQQAREMVLEIIRE 234
Score = 132 (51.5 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
Identities = 51/170 (30%), Positives = 84/170 (49%)
Query: 128 GESVFR-MLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGP-PGTTERAVMISAKEE 184
G S + +L+PA KVG +IG+ GE IK++ E T + + I DGP P ++ + I+ +
Sbjct: 160 GNSTIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITG--D 217
Query: 185 PESSLPPAMDGLLRV--HKRIVD--GLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQ 240
P + A + +L + K D G+ SD + S GG S ++ VP G +IG+
Sbjct: 218 P-FKVQQAREMVLEIIREKDQADFRGVRSDFT---SRAGGG-SIEVSVPRFVVGIVIGRN 272
Query: 241 GGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
G +K IQ + VR+ + P + +R +V+G A +I
Sbjct: 273 GEMIKKIQNDAG--VRI---QFKPDDGISPERAAQVMGPPDRCQHAARII 317
Score = 87 (35.7 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 30/110 (27%), Positives = 46/110 (41%)
Query: 395 TPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEI 451
TP I ++T +P VIG G +I I + SGA V +Q P I
Sbjct: 350 TPGGIQEITYT--VPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTI 407
Query: 452 SGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSN 501
G Q++ A+ LI + A+ +GA G +P++ +P N
Sbjct: 408 RGAPQQIEVARHLIDEKVGGAS------LGAPTAFGQSPFSQPPAAPHQN 451
Score = 67 (28.6 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 15/68 (22%), Positives = 29/68 (42%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQL 464
++ +P VIG G I I+ +G + + G+ E ++ G + Q A ++
Sbjct: 257 EVSVPRFVVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAARI 316
Query: 465 IQNFMAEA 472
I + A
Sbjct: 317 INELILTA 324
Score = 37 (18.1 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 17/69 (24%), Positives = 23/69 (33%)
Query: 344 NPQYMPPPRQAESYYPPADLPPPMEK---QPHQGISAYGREAPVNVHGSSNAQSTPSMIT 400
+P PP ++ +PP P K PH G A + S Q+
Sbjct: 439 SPFSQPPAAPHQNTFPPRAFPNIAAKVNGNPHS-TPVSGPPAFLTQGWGSTYQAWQQPTQ 497
Query: 401 QVTQQMQIP 409
QV Q P
Sbjct: 498 QVPSQQSQP 506
>UNIPROTKB|F1NV59 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:AADN02012752 IPI:IPI00579990
Ensembl:ENSGALT00000014526 ArrayExpress:F1NV59 Uniprot:F1NV59
Length = 632
Score = 176 (67.0 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 51/155 (32%), Positives = 81/155 (52%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP VG IIGR GE I +I +E+ +I+I G ER+ M++ E S +D
Sbjct: 104 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 163
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
+ V K G + H G G V ++++PAS+AG +IGK G T+K +QE + V
Sbjct: 164 I--VEK----GRPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQERAG--V 214
Query: 256 RVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+++ +D P D+ + + GD V +A E++
Sbjct: 215 KMVMIQDGPQNT-GADKPLRITGDPYKVQQAKEMV 248
Score = 96 (38.9 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGPPGT 172
PG +V +++PA K G +IG+ GE IK++ E + + I DGP T
Sbjct: 180 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNT 226
Score = 75 (31.5 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 23/116 (19%), Positives = 46/116 (39%)
Query: 379 GREAPVNVHGSS-NAQSTPSMITQVTQ------QMQIPLSYADAVIGTAGASISYIRRSS 431
G + P+ + G Q M+ ++ + ++ IP VIG G I I+ +
Sbjct: 227 GADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVPIPRFAVGIVIGRNGEMIKKIQNDA 286
Query: 432 GATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQG 487
G + + G + +I+G + Q A ++I + + A + G +G
Sbjct: 287 GVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLRSVQAGNPGGPGGPGGRG 342
Score = 69 (29.3 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 25/92 (27%), Positives = 37/92 (40%)
Query: 417 IGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEISGTASQVQTAQQLIQNFMAEAA 473
+ G +I I + SGA + +Q P I GT Q+ A+QLI+ +
Sbjct: 379 VSLRGETIKSISQQSGARIELQRNPPPNADPNMKMFTIRGTPQQIDYARQLIEEKIGGPV 438
Query: 474 APSQAQMGASADQGYNPYASMYG--SPPSNPG 503
P +G G P+ + G PP PG
Sbjct: 439 NP----LGPPVPHG--PHGVVPGPHGPPGPPG 464
Score = 62 (26.9 bits), Expect = 4.3e-06, Sum P(3) = 4.3e-06
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 228 VPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAM 287
+P G +IG+ G +K IQ + VR+ + P DR+ ++ G A
Sbjct: 263 IPRFAVGIVIGRNGEMIKKIQNDAG--VRI---QFKPDDGTTPDRIAQITGPPDRCQHAA 317
Query: 288 ELIGSHLR 295
E+I LR
Sbjct: 318 EIITDLLR 325
>RGD|621828 [details] [associations]
symbol:Khsrp "KH-type splicing regulatory protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030425 "dendrite" evidence=IDA] [GO:0043025
"neuronal cell body" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621828 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0043025 GO:GO:0030425
GO:GO:0006397 GO:GO:0006351 GO:GO:0003730 GO:GO:0051028
HOVERGEN:HBG000625 KO:K13210 InterPro:IPR015096 Pfam:PF09005
CTD:8570 EMBL:AF308818 IPI:IPI00200920 RefSeq:NP_598286.1
UniGene:Rn.92643 ProteinModelPortal:Q99PF5 SMR:Q99PF5
PhosphoSite:Q99PF5 REPRODUCTION-2DPAGE:Q99PF5 PRIDE:Q99PF5
GeneID:171137 KEGG:rno:171137 NextBio:621918 Genevestigator:Q99PF5
Uniprot:Q99PF5
Length = 721
Score = 165 (63.1 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 47/163 (28%), Positives = 86/163 (52%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP VG IIGR GE I KI +++ +++I G ER+V ++ E +D
Sbjct: 152 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDD 211
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
++ + G D+++ G G V ++++PA +AG +IGK G T+K +QE + +
Sbjct: 212 IVSRGRGGPPGQFHDNANG--GQNGTVQ-EIMIPAGKAGLVIGKGGETIKQLQERAGVKM 268
Query: 256 RVL--GAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
++ G+++ V D+ + ++GD V +A E++ LR+
Sbjct: 269 ILIQDGSQNTNV-----DKPLRIIGDPYKVQQACEMVMDILRE 306
Score = 116 (45.9 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 57/240 (23%), Positives = 98/240 (40%)
Query: 61 EQVTEDQLTEDQVPEDHVPEDQ--VPEDHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGS 118
EQ+ + Q +D + + D +PE V PE + L + G
Sbjct: 166 EQINKIQ--QDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQ 223
Query: 119 TEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGPPGTT-ERA 176
G +V +++PA K G +IG+ GE IK++ E + I I DG T ++
Sbjct: 224 FHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKP 283
Query: 177 V-MISAKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGS 235
+ +I + + + MD +LR +R G D + S GG + VP G
Sbjct: 284 LRIIGDPYKVQQACEMVMD-ILR--ERDQGGF-GDRNEYGSRVGGGIDVP--VPRHSVGV 337
Query: 236 LIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLR 295
+IG+ G +K IQ + VR+ +D +++ ++G A +I L+
Sbjct: 338 VIGRSGEMIKKIQNDAG--VRIQFKQD---DGTGPEKIAHIMGPPDRCEHAARIINDLLQ 392
Score = 88 (36.0 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 31/106 (29%), Positives = 42/106 (39%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEISGTASQVQTAQQL 464
IP VIG G ++ I + +GA V I G P I G+ Q+ A+QL
Sbjct: 432 IPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHAKQL 491
Query: 465 IQNFMAEAAAPSQAQMGASADQG----YNPYASMYGSPPSNPGHAG 506
I+ + P G G ++P G PP P HAG
Sbjct: 492 IEEKIEGPLCPVGPGPGGPGPAGPMGPFHPGPFNQG-PPGAPPHAG 536
Score = 63 (27.2 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 16/75 (21%), Positives = 30/75 (40%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
+P VIG +G I I+ +G + ++ G E I G + + A ++I +
Sbjct: 330 VPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIIND 389
Query: 468 FMAEAAAPSQAQMGA 482
+ + GA
Sbjct: 390 LLQSLRSGPPGPPGA 404
Score = 39 (18.8 bits), Expect = 5.2e-08, Sum P(3) = 5.2e-08
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 473 AAP-SQAQMGASADQGYNPYASMYGSPPSNPG 503
A P SQ A+ + Y A+ YG P PG
Sbjct: 667 APPGSQPDYSAAWAEYYRQQAAYYGQTPG-PG 697
Score = 38 (18.4 bits), Expect = 5.2e-08, Sum P(3) = 5.2e-08
Identities = 14/49 (28%), Positives = 18/49 (36%)
Query: 345 PQYMPPPRQAESYYPP-ADLPPPMEKQPHQGISAYGREAPVNVHGSSNA 392
P + P Q PP A PPP + P + Y P H + A
Sbjct: 518 PFHPGPFNQGPPGAPPHAGGPPPHQYPPQGWGNTYPEWQPPAPHDPNKA 566
>UNIPROTKB|F1NYJ3 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02026565
EMBL:AADN02026566 EMBL:AADN02026567 EMBL:AADN02026568
EMBL:AADN02026569 EMBL:AADN02026570 IPI:IPI00819889
Ensembl:ENSGALT00000006277 ArrayExpress:F1NYJ3 Uniprot:F1NYJ3
Length = 508
Score = 166 (63.5 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 50/161 (31%), Positives = 84/161 (52%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP + VG IIGR GE I +I E+ +I+I G ER +++ PES ++
Sbjct: 73 VPDKMVGFIIGRGGEQISRIQIESGCKIQIAPDSGGMPERPCVLTGT--PES-----IEQ 125
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
R+ +IVD + G ++L+PAS+ G +IGK G T+K +QE + V
Sbjct: 126 AKRLLGQIVDRCRNGPGFHNDVDGNSTIQEILIPASKVGLVIGKGGETIKQLQERTG--V 183
Query: 256 RVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
+++ +D P+ D+ + + GDA V +A E++ +R+
Sbjct: 184 KMIMIQDGPM-PTGADKPLRITGDAFKVQQAREMVLEIIRE 223
Score = 130 (50.8 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 49/156 (31%), Positives = 78/156 (50%)
Query: 128 GESVFR-MLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGP-PGTTERAVMISAKEE 184
G S + +L+PA KVG +IG+ GE IK++ E T + I I DGP P ++ + I+
Sbjct: 149 GNSTIQEILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPMPTGADKPLRITGDAF 208
Query: 185 PESSLPPAMDGLLRVHKRIVD--GLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGG 242
+ ++R K D G+ +D S S GG S ++ VP G +IG+ G
Sbjct: 209 KVQQAREMVLEIIR-EKDQADFRGVRNDFS---SRMGGG-SIEVSVPRFAVGIVIGRNGE 263
Query: 243 TVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+K IQ + VR+ + P + +RV +V+G
Sbjct: 264 MIKKIQNDAG--VRI---QFKPDDGISPERVAQVMG 294
Score = 82 (33.9 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 29/110 (26%), Positives = 44/110 (40%)
Query: 395 TPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEI 451
TP + ++T +P VIG G +I I + SGA V +Q PG I
Sbjct: 339 TPGGMQEITYT--VPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGVRIFTI 396
Query: 452 SGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSN 501
G Q++ A+ LI + + MG G +P+ +P N
Sbjct: 397 RGVPQQIELARHLIDEKVGGTS------MGGPGGFGQSPFNQAPTTPHQN 440
Score = 65 (27.9 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 15/68 (22%), Positives = 28/68 (41%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQL 464
++ +P VIG G I I+ +G + + G+ E ++ G + Q A +
Sbjct: 246 EVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERVAQVMGLPDRCQHAAHI 305
Query: 465 IQNFMAEA 472
I + A
Sbjct: 306 ISELILTA 313
>UNIPROTKB|F1NGC0 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:AADN02026565
EMBL:AADN02026566 EMBL:AADN02026567 EMBL:AADN02026568
EMBL:AADN02026569 EMBL:AADN02026570 IPI:IPI00578263
Ensembl:ENSGALT00000039554 ArrayExpress:F1NGC0 Uniprot:F1NGC0
Length = 539
Score = 166 (63.5 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 50/161 (31%), Positives = 84/161 (52%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP + VG IIGR GE I +I E+ +I+I G ER +++ PES ++
Sbjct: 102 VPDKMVGFIIGRGGEQISRIQIESGCKIQIAPDSGGMPERPCVLTGT--PES-----IEQ 154
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
R+ +IVD + G ++L+PAS+ G +IGK G T+K +QE + V
Sbjct: 155 AKRLLGQIVDRCRNGPGFHNDVDGNSTIQEILIPASKVGLVIGKGGETIKQLQERTG--V 212
Query: 256 RVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
+++ +D P+ D+ + + GDA V +A E++ +R+
Sbjct: 213 KMIMIQDGPM-PTGADKPLRITGDAFKVQQAREMVLEIIRE 252
Score = 130 (50.8 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 49/156 (31%), Positives = 78/156 (50%)
Query: 128 GESVFR-MLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGP-PGTTERAVMISAKEE 184
G S + +L+PA KVG +IG+ GE IK++ E T + I I DGP P ++ + I+
Sbjct: 178 GNSTIQEILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPMPTGADKPLRITGDAF 237
Query: 185 PESSLPPAMDGLLRVHKRIVD--GLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGG 242
+ ++R K D G+ +D S S GG S ++ VP G +IG+ G
Sbjct: 238 KVQQAREMVLEIIR-EKDQADFRGVRNDFS---SRMGGG-SIEVSVPRFAVGIVIGRNGE 292
Query: 243 TVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+K IQ + VR+ + P + +RV +V+G
Sbjct: 293 MIKKIQNDAG--VRI---QFKPDDGISPERVAQVMG 323
Score = 82 (33.9 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 29/110 (26%), Positives = 44/110 (40%)
Query: 395 TPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEI 451
TP + ++T +P VIG G +I I + SGA V +Q PG I
Sbjct: 368 TPGGMQEITYT--VPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGVRIFTI 425
Query: 452 SGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSN 501
G Q++ A+ LI + + MG G +P+ +P N
Sbjct: 426 RGVPQQIELARHLIDEKVGGTS------MGGPGGFGQSPFNQAPTTPHQN 469
Score = 65 (27.9 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 15/68 (22%), Positives = 28/68 (41%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQL 464
++ +P VIG G I I+ +G + + G+ E ++ G + Q A +
Sbjct: 275 EVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERVAQVMGLPDRCQHAAHI 334
Query: 465 IQNFMAEA 472
I + A
Sbjct: 335 ISELILTA 342
>ZFIN|ZDB-GENE-040426-1926 [details] [associations]
symbol:hnrnpk "heterogeneous nuclear
ribonucleoprotein K" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-040426-1926 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 InterPro:IPR012987 Pfam:PF08067
EMBL:CR376792 EMBL:CU682767 IPI:IPI00865147 RefSeq:NP_998159.2
UniGene:Dr.106469 UniGene:Dr.122250 Ensembl:ENSDART00000097919
GeneID:406267 KEGG:dre:406267 NextBio:20817900 ArrayExpress:F1QWB4
Bgee:F1QWB4 Uniprot:F1QWB4
Length = 429
Score = 125 (49.1 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 31/80 (38%), Positives = 42/80 (52%)
Query: 388 GSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEM 447
G S+ P + TQVT IP A ++IG G I IR SGA++ I E +
Sbjct: 344 GRSSYSDGPVITTQVT----IPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLQGSEDR 399
Query: 448 TVEISGTASQVQTAQQLIQN 467
+ I+GT Q+Q AQ L+QN
Sbjct: 400 IITITGTQDQIQNAQYLLQN 419
Score = 123 (48.4 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 55/197 (27%), Positives = 91/197 (46%)
Query: 94 PEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPG----ESV-FRMLVPAQKVGSIIGRK 148
PE+ E+ K+ N A S E+K P E V R+L+ ++ G++IG+
Sbjct: 3 PENDPQEEETFSNKESNGKRSADDSEEEK-PYKRSRNSDEMVELRILLQSKNAGAVIGKG 61
Query: 149 GEFIKKIVEETRARIKILD--GPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDG 206
G+ IK + + A + + D GP ER + +SA +P + LL+ I+
Sbjct: 62 GKNIKALRTDYNATVSVPDSSGP----ERILSVSA------DIPTVAEILLK----IIPT 107
Query: 207 LDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVF 266
L+ H G +LL+ S AGS+IG +G +K +++++ +++ E P
Sbjct: 108 LEEYQHH--KGVDFDCELRLLIHQSLAGSIIGLKGAKIKELRDSTQTTIKLF-QECCPQ- 163
Query: 267 ALQDDRVVEVVGDASGV 283
DRVV V G A V
Sbjct: 164 --STDRVVLVGGKAERV 178
Score = 99 (39.9 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 28/95 (29%), Positives = 49/95 (51%)
Query: 205 DGLDSDSSHAPS-GTGGK--------VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
DG DS+SS S +GG+ ++T++ +P AGS+IGK G +K I+ S +
Sbjct: 328 DGYDSNSSWDSSYQSGGRSSYSDGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASI 387
Query: 256 RVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
++ D P+ +DR++ + G + A L+
Sbjct: 388 KI----DEPLQG-SEDRIITITGTQDQIQNAQYLL 417
Score = 95 (38.5 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 29/101 (28%), Positives = 51/101 (50%)
Query: 88 VPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPG---ESVFRMLVPAQKVGSI 144
VP+ PE I+ + + E + L + T +++ G + R+L+ GSI
Sbjct: 78 VPDSSGPERILSVSADIPTVAE--ILLKIIPTLEEYQHHKGVDFDCELRLLIHQSLAGSI 135
Query: 145 IGRKGEFIKKIVEETRARIKIL-DGPPGTTERAVMISAKEE 184
IG KG IK++ + T+ IK+ + P +T+R V++ K E
Sbjct: 136 IGLKGAKIKELRDSTQTTIKLFQECCPQSTDRVVLVGGKAE 176
>UNIPROTKB|F1MX51 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:DAAA02008247
EMBL:DAAA02008246 IPI:IPI00698543 Ensembl:ENSBTAT00000011751
Uniprot:F1MX51
Length = 602
Score = 160 (61.4 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
Identities = 50/156 (32%), Positives = 82/156 (52%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP VG IIGR GE I +I +E+ +I+I G ER+ M++ E S +D
Sbjct: 67 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLD- 125
Query: 196 LLRVHKRIVD-GLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCI 254
IV+ G + H G G K S+++++PAS+AG L+GK G T+ + +E +
Sbjct: 126 -------IVEKGRPAPGFH--HGDGPKCSSEIMIPASKAG-LVGKGGETINNSEERAG-- 173
Query: 255 VRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+++ +D P D+ + + GD V +A E++
Sbjct: 174 VKMVMIQDGPQNT-GADKPLRITGDPYKVQQAKEMV 208
Score = 109 (43.4 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 44/166 (26%), Positives = 75/166 (45%)
Query: 134 MLVPAQKVGSIIGRKGEFIKKIVEETRARIKIL---DGPPGT-TERAVMISAKEEPESSL 189
+++PA K G ++G+ GE I E RA +K++ DGP T ++ + I+ +P +
Sbjct: 148 IMIPASKAG-LVGKGGETINN--SEERAGVKMVMIQDGPQNTGADKPLRITG--DPYK-V 201
Query: 190 PPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQE 249
A + +L + R G + S GG + +P G +IG+ G +K IQ
Sbjct: 202 QQAKEMVLELI-RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQN 260
Query: 250 ASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLR 295
+ VR+ + P DR+ ++ G A E+I LR
Sbjct: 261 DAG--VRI---QFKPDDGTTPDRIAQITGPPDRCQHAAEIITDLLR 301
Score = 87 (35.7 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
Identities = 27/99 (27%), Positives = 40/99 (40%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEISGTASQVQTAQQL 464
+P +IG G +I I + SGA + +Q P I GT Q+ A+QL
Sbjct: 340 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 399
Query: 465 IQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSNPG 503
I+ + P +G G + +G PP PG
Sbjct: 400 IEEKIGGPVNP----LGPPVPHGPHGVPGPHG-PPGPPG 433
Score = 62 (26.9 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 16/67 (23%), Positives = 28/67 (41%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
IP VIG G I I+ +G + + G + +I+G + Q A ++I +
Sbjct: 239 IPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEIITD 298
Query: 468 FMAEAAA 474
+ A
Sbjct: 299 LLRSVQA 305
>ZFIN|ZDB-GENE-040426-2159 [details] [associations]
symbol:fubp1 "far upstream element (FUSE) binding
protein 1" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-2159 GO:GO:0003723 CTD:8880 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
OMA:NGQEGDQ EMBL:CT027589 EMBL:BC064649 IPI:IPI00484709
RefSeq:NP_998309.1 UniGene:Dr.76240 SMR:Q6P2A9
Ensembl:ENSDART00000081442 Ensembl:ENSDART00000128153 GeneID:406418
KEGG:dre:406418 InParanoid:Q6P2A9 NextBio:20818020 Uniprot:Q6P2A9
Length = 642
Score = 167 (63.8 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 54/173 (31%), Positives = 89/173 (51%)
Query: 125 GWPGESVFRML-VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKE 183
G P SV VP VG IIGR GE I ++ +E+ +I+I G +R+V ++
Sbjct: 84 GGPPRSVSEEFKVPDGMVGFIIGRGGEQISRLQQESGCKIQIAPDSGGMPDRSVTLTGS- 142
Query: 184 EPESSLPPAMDGLLRVHKRIVD-GLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGG 242
P A+ R+ IV+ G S + H G G V ++++PAS+AG +IGK G
Sbjct: 143 ------PDAIMTAKRLLSEIVEKGRPSPAFHHNDGPGMSVH-EMMIPASKAGLVIGKGGE 195
Query: 243 TVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLR 295
T+K +QE + V+++ +D P D+ + + GD V +A +++ +R
Sbjct: 196 TIKQLQERAG--VKMVMIQDGPQNT-GADKPLRISGDPFKVQQAKDMVMDLIR 245
Score = 159 (61.0 bits), Expect = 9.0e-12, Sum P(2) = 9.0e-12
Identities = 51/172 (29%), Positives = 82/172 (47%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGPPGT-TERAVMISAKE- 183
PG SV M++PA K G +IG+ GE IK++ E + + I DGP T ++ + IS
Sbjct: 172 PGMSVHEMMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRISGDPF 231
Query: 184 EPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGT 243
+ + + MD L+R + + S A G GG S + VP G +IG+ G
Sbjct: 232 KVQQAKDMVMD-LIR-DQGFREQRGEYGSRAGGGGGGGESLDVPVPRFAVGIVIGRSGEM 289
Query: 244 VKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLR 295
+K IQ + VR+ + P +R+ +++G A ++I LR
Sbjct: 290 IKKIQNDTG--VRI---QFKPDDGSTPERIAQIMGPPDRAQHAADIITDLLR 336
Score = 79 (32.9 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 27/109 (24%), Positives = 44/109 (40%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEI---SGTASQVQTAQQL 464
+P +IG G +I I + SGA + +Q + ++I G+ Q+ A+QL
Sbjct: 381 VPTMKTGLIIGKGGETIKNISQQSGARIELQRNPPPNSDPNIKIFTVRGSPQQIDYARQL 440
Query: 465 IQNFMAEAAAPSQAQMGASADQG---YNPYASMYGSP----PSNPGHAG 506
++ + +P G G + P G P P NPG G
Sbjct: 441 VEEKIGGPVSPMGGPHGPPGPHGGPSHGPPGPQ-GPPAPMGPYNPGPYG 488
Score = 63 (27.2 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 18/80 (22%), Positives = 29/80 (36%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
+P VIG +G I I+ +G + + G E +I G + Q A +I +
Sbjct: 274 VPRFAVGIVIGRSGEMIKKIQNDTGVRIQFKPDDGSTPERIAQIMGPPDRAQHAADIITD 333
Query: 468 FMAEAAAPSQAQMGASADQG 487
+ A G G
Sbjct: 334 LLRSVQAGGPPGHGGGGGGG 353
Score = 54 (24.1 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 39/156 (25%), Positives = 58/156 (37%)
Query: 359 PPADLPPPMEKQPHQGISAY-----GREAPV-----NVHGSSNAQSTPSMITQVTQQMQI 408
PP PP QP + Y G+ P +NA + + +Q QQ Q
Sbjct: 491 PPGPHGPPAPYQPQGWGNGYPHWQQGQPDPTVCSPDKAAADANAAAWAAYYSQYQQQPQG 550
Query: 409 PLSYADAVIGTAGAS-ISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
P++ A GT A+ + T +E G+ + + A+ Q Q +
Sbjct: 551 PMTPTSAAPGTTQANGQGQGQPQQDYTKAWEEYYKKQGQAAPQAAAAATATQPGGQ--PD 608
Query: 468 FMAEAAAPSQAQMGASADQGYNPYASMYGSPPSNPG 503
+ A A A Q A QG P A M G+P + G
Sbjct: 609 YSA-AWAEYYRQQAAYYGQGA-PQA-MGGAPQAQQG 641
Score = 52 (23.4 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 14/44 (31%), Positives = 17/44 (38%)
Query: 345 PQYMPPPRQAESYYPPADLPPPMEKQPHQGISAYGREAPVNVHG 388
P P P S+ PP PP P+ YG + P HG
Sbjct: 455 PHGPPGPHGGPSHGPPGPQGPPAPMGPYNP-GPYG-QGPPGPHG 496
>WB|WBGene00017816 [details] [associations]
symbol:F26B1.2b species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007126 "meiosis" evidence=IMP] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0009792
GO:GO:0006974 GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 124 (48.7 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 35/97 (36%), Positives = 49/97 (50%)
Query: 371 PHQGISAYGREAPVNV-HGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRR 429
P QG +G AP N +G P QVT IP +IG G I+ IR+
Sbjct: 293 PQQG--QFG--APNNAGYGYGPGGGGPVTTAQVT----IPSDLGGTIIGRGGERIARIRQ 344
Query: 430 SSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQ 466
SGA +T++++ G P E + I GT Q+ +AQ L+Q
Sbjct: 345 ESGAQITLEQSNGQP-ERIITIKGTEQQIHSAQYLLQ 380
Score = 106 (42.4 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 34/104 (32%), Positives = 55/104 (52%)
Query: 82 QVPEDHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESVFRMLVPAQKV 141
QVP+ + PE +V E + L ++ L +E+ P E RMLV
Sbjct: 84 QVPDSNTPE-RVCTVTADEKTVLNILKDVLPRLEDNFSERD----PCE--VRMLVHQSHA 136
Query: 142 GSIIGRKGEFIKKIVEETRARIKILDG-PPGTTERAVMISAKEE 184
G++IGR G IK++ E+ AR+KI G PG+T+R ++ S +++
Sbjct: 137 GALIGRNGSKIKELREKCSARLKIFTGCAPGSTDRVLITSGEQK 180
Score = 87 (35.7 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 128 GESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEE 184
G+ R+LV ++ G+IIG+ GE IK++ E A +++ D T ER ++A E+
Sbjct: 48 GKFEVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDS--NTPERVCTVTADEK 102
Score = 77 (32.2 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 20/84 (23%), Positives = 42/84 (50%)
Query: 213 HAPSGTGGKVST-KLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDD 271
+ P G GG V+T ++ +P+ G++IG+ G + I++ S + + + P +
Sbjct: 308 YGPGG-GGPVTTAQVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSNGQP------E 360
Query: 272 RVVEVVGDASGVHKAMELIGSHLR 295
R++ + G +H A L+ +R
Sbjct: 361 RIITIKGTEQQIHSAQYLLQQCVR 384
Score = 72 (30.4 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 220 GKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRV 257
GK +LLV + AG++IGK G +K ++ N V+V
Sbjct: 48 GKFEVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQV 85
Score = 70 (29.7 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 225 KLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVH 284
++LV S AG+LIG+ G +K ++E + +++ P DRV+ G+ V
Sbjct: 128 RMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTG-CAPG---STDRVLITSGEQKNVL 183
Query: 285 KAMELIGSHLRKFLVDRSIIP 305
+E + L++ + S P
Sbjct: 184 GIIEEVMKELKEIPIKGSATP 204
Score = 42 (19.8 bits), Expect = 0.00054, Sum P(3) = 0.00054
Identities = 20/72 (27%), Positives = 29/72 (40%)
Query: 429 RSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAA--PSQAQMGASADQ 486
RS G +T +G G+ + E +G Q + + + A P Q Q GA +
Sbjct: 251 RSYGGAIT----QG-GGQRSFE-AGDFQQFRGGPGPVPGYAMSAPGYPPQQGQFGAPNNA 304
Query: 487 GYNPYASMYGSP 498
GY Y G P
Sbjct: 305 GYG-YGPGGGGP 315
>UNIPROTKB|P91277 [details] [associations]
symbol:F26B1.2 "Protein F26B1.2, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0009792 GO:GO:0006974
GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 124 (48.7 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 35/97 (36%), Positives = 49/97 (50%)
Query: 371 PHQGISAYGREAPVNV-HGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRR 429
P QG +G AP N +G P QVT IP +IG G I+ IR+
Sbjct: 293 PQQG--QFG--APNNAGYGYGPGGGGPVTTAQVT----IPSDLGGTIIGRGGERIARIRQ 344
Query: 430 SSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQ 466
SGA +T++++ G P E + I GT Q+ +AQ L+Q
Sbjct: 345 ESGAQITLEQSNGQP-ERIITIKGTEQQIHSAQYLLQ 380
Score = 106 (42.4 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 34/104 (32%), Positives = 55/104 (52%)
Query: 82 QVPEDHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESVFRMLVPAQKV 141
QVP+ + PE +V E + L ++ L +E+ P E RMLV
Sbjct: 84 QVPDSNTPE-RVCTVTADEKTVLNILKDVLPRLEDNFSERD----PCE--VRMLVHQSHA 136
Query: 142 GSIIGRKGEFIKKIVEETRARIKILDG-PPGTTERAVMISAKEE 184
G++IGR G IK++ E+ AR+KI G PG+T+R ++ S +++
Sbjct: 137 GALIGRNGSKIKELREKCSARLKIFTGCAPGSTDRVLITSGEQK 180
Score = 87 (35.7 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 128 GESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEE 184
G+ R+LV ++ G+IIG+ GE IK++ E A +++ D T ER ++A E+
Sbjct: 48 GKFEVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDS--NTPERVCTVTADEK 102
Score = 77 (32.2 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 20/84 (23%), Positives = 42/84 (50%)
Query: 213 HAPSGTGGKVST-KLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDD 271
+ P G GG V+T ++ +P+ G++IG+ G + I++ S + + + P +
Sbjct: 308 YGPGG-GGPVTTAQVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSNGQP------E 360
Query: 272 RVVEVVGDASGVHKAMELIGSHLR 295
R++ + G +H A L+ +R
Sbjct: 361 RIITIKGTEQQIHSAQYLLQQCVR 384
Score = 72 (30.4 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 220 GKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRV 257
GK +LLV + AG++IGK G +K ++ N V+V
Sbjct: 48 GKFEVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQV 85
Score = 70 (29.7 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 225 KLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVH 284
++LV S AG+LIG+ G +K ++E + +++ P DRV+ G+ V
Sbjct: 128 RMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTG-CAPG---STDRVLITSGEQKNVL 183
Query: 285 KAMELIGSHLRKFLVDRSIIP 305
+E + L++ + S P
Sbjct: 184 GIIEEVMKELKEIPIKGSATP 204
Score = 42 (19.8 bits), Expect = 0.00054, Sum P(3) = 0.00054
Identities = 20/72 (27%), Positives = 29/72 (40%)
Query: 429 RSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAA--PSQAQMGASADQ 486
RS G +T +G G+ + E +G Q + + + A P Q Q GA +
Sbjct: 251 RSYGGAIT----QG-GGQRSFE-AGDFQQFRGGPGPVPGYAMSAPGYPPQQGQFGAPNNA 304
Query: 487 GYNPYASMYGSP 498
GY Y G P
Sbjct: 305 GYG-YGPGGGGP 315
>ZFIN|ZDB-GENE-050706-149 [details] [associations]
symbol:zgc:110045 "zgc:110045" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-050706-149
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CR759794
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
OrthoDB:EOG46WZ8K EMBL:BC098540 IPI:IPI00629204
RefSeq:NP_001035073.1 UniGene:Dr.87947 SMR:Q4KMJ2
Ensembl:ENSDART00000079745 GeneID:664755 KEGG:dre:664755
OMA:QSCARIT NextBio:20902333 Uniprot:Q4KMJ2
Length = 222
Score = 175 (66.7 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 51/158 (32%), Positives = 85/158 (53%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I DG + ER V I+ E
Sbjct: 20 RLLMHGKEVGSIIGKKGETVKKMREESGARINISDG--SSPERIVTITGASEV------I 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
+ ++ + + + ++ + V+ +L+ PASQ GSLIGK G +K I+E++
Sbjct: 72 FKAFAMIAEKFEEDILASMINSTVTSRPPVTLRLVFPASQCGSLIGKGGSKIKEIRESTG 131
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R V + G + + ++ I
Sbjct: 132 AQVQVAG-DLLPD---STERAVTISGTPHAITQCVKHI 165
Score = 82 (33.9 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 217 GTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEV 276
G ++ +LL+ + GS+IGK+G TVK ++E S + + P +R+V +
Sbjct: 12 GLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISDGSS-P------ERIVTI 64
Query: 277 VGDASGVHKAMELI 290
G + + KA +I
Sbjct: 65 TGASEVIFKAFAMI 78
Score = 80 (33.2 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 27/86 (31%), Positives = 40/86 (46%)
Query: 389 SSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPG--E 446
+S ST + VT ++ P S ++IG G+ I IR S+GA V + +P E
Sbjct: 88 ASMINSTVTSRPPVTLRLVFPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDL-LPDSTE 146
Query: 447 MTVEISGTASQVQTAQQLIQNFMAEA 472
V ISGT + + I M E+
Sbjct: 147 RAVTISGTPHAITQCVKHICTVMLES 172
>UNIPROTKB|C9JZY3 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00984041 ProteinModelPortal:C9JZY3 SMR:C9JZY3
STRING:C9JZY3 Ensembl:ENST00000468324 ArrayExpress:C9JZY3
Bgee:C9JZY3 Uniprot:C9JZY3
Length = 168
Score = 174 (66.3 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 57/151 (37%), Positives = 77/151 (50%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
RML+ ++VGSIIG+KGE +K+I E++ ARI I +G ER I+
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGSTA-------- 70
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVST-----KLLVPASQAGSLIGKQGGTVKSI 247
+ I LD D AP+ GG VS +L++PASQ GSLIGK G +K I
Sbjct: 71 --AVFHAVSMIAFKLDEDLCAAPAN-GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEI 127
Query: 248 QEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+E + V+V G DL +R V V G
Sbjct: 128 RETTGAQVQVAG--DL--LPNSTERAVTVSG 154
Score = 79 (32.9 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 20/73 (27%), Positives = 38/73 (52%)
Query: 222 VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDAS 281
++ ++L+ + GS+IGK+G TVK I+E S+ + + P +R+ + G +
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI-SEGSCP------ERITTITGSTA 70
Query: 282 GVHKAMELIGSHL 294
V A+ +I L
Sbjct: 71 AVFHAVSMIAFKL 83
Score = 72 (30.4 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 402 VTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPG--EMTVEISGTASQV 458
VT ++ IP S ++IG AG I IR ++GA V + +P E V +SG +
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDL-LPNSTERAVTVSGVPDAI 159
>UNIPROTKB|G4N5A5 [details] [associations]
symbol:MGG_16887 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CM001233 GO:GO:0003723
RefSeq:XP_003712769.1 ProteinModelPortal:G4N5A5
EnsemblFungi:MGG_16887T0 GeneID:12985187 KEGG:mgr:MGG_16887
Uniprot:G4N5A5
Length = 370
Score = 131 (51.2 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 41/155 (26%), Positives = 75/155 (48%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R +V +++ G IIG+ G+ + + +ET + + G +R + I+ E S
Sbjct: 49 RAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGGCEGISKAYAV 108
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
V + +++G S G KLL+ +Q G++IG+QG +K IQ+ S
Sbjct: 109 ------VARALLEGAPSMGMGGVVSNNGTHPIKLLISHNQMGTIIGRQGLKIKHIQDVSG 162
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAM 287
VR++ +++ +RVVEV G G+ +A+
Sbjct: 163 --VRMVAQKEM--LPQSTERVVEVQGTPEGIQRAV 193
Score = 107 (42.7 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQET-RGVPGEMTVEISGTASQVQTA 461
TQ + IP +IG AG+ IS IR++SGA ++I + GE I G+A +TA
Sbjct: 289 TQNISIPADMVGCIIGRAGSKISEIRKTSGARISIAKAPHDETGERMFTIMGSAKANETA 348
Query: 462 QQLI-QNFMAEAAAPSQ 477
L+ +N AE SQ
Sbjct: 349 LFLLYENLEAEKMRRSQ 365
Score = 69 (29.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 181 AKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSG----TGGKVSTKLLVPASQAGSL 236
A E + L +DGL +V+ L D AP +++ + +V + +AG +
Sbjct: 3 ATEAMTNELAEGIDGL-KVNDD-EPRLGPDGEPAPKTDEEYAQAQLTVRAIVSSKEAGVI 60
Query: 237 IGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHL 294
IGK G V +++ + V+ G + V + D RV+ + G G+ KA ++ L
Sbjct: 61 IGKGGKNVADLRDETG--VKA-GVSKV-VQGVHD-RVLTITGGCEGISKAYAVVARAL 113
Score = 66 (28.3 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 128 GESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGPPGTTERAVMISAKEE 184
G ++L+ ++G+IIGR+G IK I + + R + + P +TER V + E
Sbjct: 130 GTHPIKLLISHNQMGTIIGRQGLKIKHIQDVSGVRMVAQKEMLPQSTERVVEVQGTPE 187
>UNIPROTKB|F1PEW1 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
OMA:AAPHQNT EMBL:AAEX03006837 EMBL:AAEX03006838
Ensembl:ENSCAFT00000031728 Uniprot:F1PEW1
Length = 547
Score = 162 (62.1 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 49/161 (30%), Positives = 83/161 (51%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP + VG IIGR GE I +I E+ +I+I G ER +++ PES ++
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGT--PES-----IEQ 136
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
R+ +IVD + G ++L+PAS+ G +IGK G T+K +QE + V
Sbjct: 137 AKRLLGQIVDRCRNGPGFHNDIDGNSTIQEILIPASKVGLVIGKGGETIKQLQERTG--V 194
Query: 256 RVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
+++ +D P+ D+ + + GD V +A E++ +R+
Sbjct: 195 KMVMIQDGPL-PTGADKPLRITGDPFKVQQAREMVLEIIRE 234
Score = 129 (50.5 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 51/170 (30%), Positives = 82/170 (48%)
Query: 128 GESVFR-MLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGP-PGTTERAVMISAKEE 184
G S + +L+PA KVG +IG+ GE IK++ E T + + I DGP P ++ + I+ +
Sbjct: 160 GNSTIQEILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITG--D 217
Query: 185 PESSLPPAMDGLLRV--HKRIVD--GLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQ 240
P + A + +L + K D G+ D S A G GG + VP G +IG+
Sbjct: 218 P-FKVQQAREMVLEIIREKDQADFRGVRGDFS-ARVG-GGSIEVS--VPRFAVGIVIGRN 272
Query: 241 GGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
G +K IQ + VR+ + P + +R +V+G A +I
Sbjct: 273 GEMIKKIQNDAG--VRI---QFKPDDGISPERAAQVMGPPDRCQHAAHVI 317
Score = 78 (32.5 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 30/116 (25%), Positives = 47/116 (40%)
Query: 396 PSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEIS 452
P + ++T +P VIG G +I I + SGA V +Q P I
Sbjct: 351 PGGVQEITYT--VPADKCGLVIGKGGDNIKSINQQSGAHVELQRNPPPNTDPNLRIFTIR 408
Query: 453 GTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSNPGHAGHA 508
G Q++ A+ LI + + +GA G +P++ PP+ P G A
Sbjct: 409 GIPQQIEVARHLIDEKVGGTS------LGAPGAFGQSPFSQ----PPAAPHQKGPA 454
Score = 64 (27.6 bits), Expect = 9.0e-11, Sum P(2) = 9.0e-11
Identities = 15/68 (22%), Positives = 28/68 (41%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQL 464
++ +P VIG G I I+ +G + + G+ E ++ G + Q A +
Sbjct: 257 EVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHV 316
Query: 465 IQNFMAEA 472
I + A
Sbjct: 317 INELILTA 324
Score = 47 (21.6 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 19/75 (25%), Positives = 28/75 (37%)
Query: 441 RGVPGEMTVEISGTASQVQT---AQQLIQNFMAEAAAPSQAQMGA----SADQGYNPY-A 492
RGV G+ + + G + +V A ++ E Q G D G +P A
Sbjct: 241 RGVRGDFSARVGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERA 300
Query: 493 SMYGSPPSNPGHAGH 507
+ PP HA H
Sbjct: 301 AQVMGPPDRCQHAAH 315
>UNIPROTKB|B4DLC0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HOVERGEN:HBG053520 HGNC:HGNC:8648 ChiTaRS:PCBP2
EMBL:AK296930 IPI:IPI01009186 SMR:B4DLC0 STRING:B4DLC0
Ensembl:ENST00000541275 UCSC:uc010soh.1 Uniprot:B4DLC0
Length = 301
Score = 186 (70.5 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 50/158 (31%), Positives = 92/158 (58%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER + ++ P +++ A
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 71
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
++ ++ + + S +++ + + V+ +L+VPASQ GSLIGK G +K I+E++
Sbjct: 72 FAMII---DKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R + + G + + ++ I
Sbjct: 129 AQVQVAG-DMLPN---STERAITIAGIPQSIIECVKQI 162
Score = 81 (33.6 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 210 DSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQ 269
D+ G ++ +LL+ + GS+IGK+G +VK ++E S + + + P
Sbjct: 2 DTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP----- 55
Query: 270 DDRVVEVVGDASGVHKAMELI 290
+R++ + G + + KA +I
Sbjct: 56 -ERIITLAGPTNAIFKAFAMI 75
Score = 78 (32.5 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 389 SSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPG--E 446
SS ST + VT ++ +P S ++IG G I IR S+GA V + +P E
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPNSTE 143
Query: 447 MTVEISGTA-SQVQTAQQL 464
+ I+G S ++ +Q+
Sbjct: 144 RAITIAGIPQSIIECVKQI 162
Score = 37 (18.1 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 344 NPQYMPPPRQAESYYPPADLPPPMEKQPHQGISAYGREAPVNVHGSS 390
NP PP +A + +P P + HQ ++ P+ HG++
Sbjct: 215 NPDLEGPPLEAYTIQGQYAIPQPDLTKLHQ-LAMQQSHFPMT-HGNT 259
>UNIPROTKB|Q96I24 [details] [associations]
symbol:FUBP3 "Far upstream element-binding protein 3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0010628 "positive regulation of gene expression"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:U69127 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0003677 EMBL:CH471090
GO:GO:0006351 GO:GO:0003723 EMBL:AL359092 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 EMBL:AK295155
EMBL:AL353695 EMBL:BC001325 EMBL:BC007874 EMBL:BC137338
EMBL:BC137340 IPI:IPI00063245 IPI:IPI00377261 RefSeq:NP_003925.1
UniGene:Hs.673029 UniGene:Hs.98751 ProteinModelPortal:Q96I24
SMR:Q96I24 DIP:DIP-50124N IntAct:Q96I24 STRING:Q96I24
PhosphoSite:Q96I24 DMDM:37078499 REPRODUCTION-2DPAGE:IPI00377261
PaxDb:Q96I24 PRIDE:Q96I24 DNASU:8939 Ensembl:ENST00000319725
Ensembl:ENST00000372376 GeneID:8939 KEGG:hsa:8939 UCSC:uc004bzr.1
UCSC:uc010mzd.1 CTD:8939 GeneCards:GC09P133454 HGNC:HGNC:4005
HPA:HPA047658 MIM:603536 neXtProt:NX_Q96I24 PharmGKB:PA28421
InParanoid:Q96I24 OMA:AAPHQNT OrthoDB:EOG4X97H1 PhylomeDB:Q96I24
GenomeRNAi:8939 NextBio:33614 ArrayExpress:Q96I24 Bgee:Q96I24
CleanEx:HS_FUBP3 Genevestigator:Q96I24 GermOnline:ENSG00000107164
Uniprot:Q96I24
Length = 572
Score = 159 (61.0 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 49/162 (30%), Positives = 86/162 (53%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP + VG IIGR GE I +I E+ +I+I G ER +++ PES ++
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGT--PES-----IEQ 136
Query: 196 LLRVHKRIVDGL-DSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCI 254
R+ +IVD + H + + ++L+PAS+ G +IG+ G T+K +QE +
Sbjct: 137 AKRLLGQIVDRCRNGPGFHNDIDSNSTIQ-EILIPASKVGLVIGRGGETIKQLQERTG-- 193
Query: 255 VRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
V+++ +D P+ D+ + + GDA V +A E++ +R+
Sbjct: 194 VKMVMIQDGPL-PTGADKPLRITGDAFKVQQAREMVLEIIRE 234
Score = 126 (49.4 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 47/165 (28%), Positives = 78/165 (47%)
Query: 130 SVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGP-PGTTERAVMISAKEEPES 187
++ +L+PA KVG +IGR GE IK++ E T + + I DGP P ++ + I+
Sbjct: 163 TIQEILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDAFKVQ 222
Query: 188 SLPPAMDGLLRVHKRIVD--GLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVK 245
+ ++R K D G+ D + S GG S ++ VP G +IG+ G +K
Sbjct: 223 QAREMVLEIIR-EKDQADFRGVRGDFN---SRMGGG-SIEVSVPRFAVGIVIGRNGEMIK 277
Query: 246 SIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
IQ + VR+ + P + +R +V+G A +I
Sbjct: 278 KIQNDAG--VRI---QFKPDDGISPERAAQVMGPPDRCQHAAHII 317
Score = 81 (33.6 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 28/109 (25%), Positives = 43/109 (39%)
Query: 396 PSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEIS 452
P + ++T +P VIG G +I I + SGA V +Q P I
Sbjct: 351 PGGVQEITYT--VPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIR 408
Query: 453 GTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSN 501
G Q++ A+QLI + +GA G +P++ P N
Sbjct: 409 GVPQQIEVARQLIDEKVGGT------NLGAPGAFGQSPFSQPPAPPHQN 451
Score = 65 (27.9 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 15/68 (22%), Positives = 28/68 (41%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQL 464
++ +P VIG G I I+ +G + + G+ E ++ G + Q A +
Sbjct: 257 EVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHI 316
Query: 465 IQNFMAEA 472
I + A
Sbjct: 317 ISELILTA 324
>FB|FBgn0015907 [details] [associations]
symbol:bl "bancal" species:7227 "Drosophila melanogaster"
[GO:0030529 "ribonucleoprotein complex" evidence=ISS] [GO:0003729
"mRNA binding" evidence=NAS;TAS] [GO:0005634 "nucleus"
evidence=IC;IDA;TAS] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000785 "chromatin" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=TAS]
[GO:0045165 "cell fate commitment" evidence=TAS] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0007446 "imaginal disc growth"
evidence=TAS] [GO:0008134 "transcription factor binding"
evidence=TAS] [GO:0035107 "appendage morphogenesis" evidence=TAS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0008283 GO:GO:0003729 GO:GO:0000785 GO:GO:0030529
GO:GO:0008134 GO:GO:0045165 GO:GO:0000381 GO:GO:0007446 HSSP:P61978
GO:GO:0035062 FlyBase:FBgn0015907 ChiTaRS:bl GO:GO:0035107
EMBL:AF275629 ProteinModelPortal:Q7KHL0 SMR:Q7KHL0 STRING:Q7KHL0
PRIDE:Q7KHL0 InParanoid:Q7KHL0 ArrayExpress:Q7KHL0 Bgee:Q7KHL0
Uniprot:Q7KHL0
Length = 508
Score = 120 (47.3 bits), Expect = 4.1e-12, Sum P(3) = 4.1e-12
Identities = 39/104 (37%), Positives = 50/104 (48%)
Query: 374 GISAYGREAPVNVHGSSNAQST------PSMITQVTQQMQIPLSYADAVIGTAGASISYI 427
G +A G A +GS NA + P+ TQVT IP A A+IG G I I
Sbjct: 392 GFNAVGG-ANGGPNGSPNAATNVPQGHDPNNSTQVT----IPKELAGAIIGKGGGRIRRI 446
Query: 428 RRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAE 471
R S A +TI E + + ISGT Q+Q AQ L+Q + E
Sbjct: 447 RNESSAYITIDEPLPNSNDRIITISGTPKQIQMAQYLLQQSVHE 490
Score = 98 (39.6 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 23/86 (26%), Positives = 45/86 (52%)
Query: 205 DGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLP 264
+G + +++ P G ST++ +P AG++IGK GG ++ I+ S+ + + E LP
Sbjct: 404 NGSPNAATNVPQGHDPNNSTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITI--DEPLP 461
Query: 265 VFALQDDRVVEVVGDASGVHKAMELI 290
+DR++ + G + A L+
Sbjct: 462 N---SNDRIITISGTPKQIQMAQYLL 484
Score = 84 (34.6 bits), Expect = 4.1e-12, Sum P(3) = 4.1e-12
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 129 ESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESS 188
E R+L+P+ G++IG+ G+ I+K+ + +A + + D G ER + ISA + ES+
Sbjct: 22 EETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSV-DDSQGP-ERTIQISA--DIEST 77
Query: 189 L 189
L
Sbjct: 78 L 78
Score = 77 (32.2 bits), Expect = 4.1e-12, Sum P(3) = 4.1e-12
Identities = 26/67 (38%), Positives = 36/67 (53%)
Query: 225 KLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVH 284
+LL+ S AG +IGK G +K I++ C R L V DRVV+ VG S V
Sbjct: 98 RLLIHQSLAGCVIGKGGQKIKEIRDRIGC--RFLKVFS-NVAPQSTDRVVQTVGKQSQVI 154
Query: 285 KAM-ELI 290
+A+ E+I
Sbjct: 155 EAVREVI 161
Score = 64 (27.6 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDG-PPGTTERAVMISAKE 183
R+L+ G +IG+ G+ IK+I + R +K+ P +T+R V K+
Sbjct: 98 RLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAPQSTDRVVQTVGKQ 150
Score = 60 (26.2 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 18/75 (24%), Positives = 39/75 (52%)
Query: 223 STKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASG 282
+ ++L+P+S AG++IGK G ++ ++ V V ++ P +R +++ D
Sbjct: 24 TVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQG-P------ERTIQISAD--- 73
Query: 283 VHKAMELIGSHLRKF 297
+ +E+I L+ F
Sbjct: 74 IESTLEIITEMLKYF 88
>UNIPROTKB|J9P1I9 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
EMBL:AAEX03006837 EMBL:AAEX03006838 Ensembl:ENSCAFT00000048747
Uniprot:J9P1I9
Length = 487
Score = 162 (62.1 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 49/161 (30%), Positives = 83/161 (51%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP + VG IIGR GE I +I E+ +I+I G ER +++ PES ++
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGT--PES-----IEQ 136
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
R+ +IVD + G ++L+PAS+ G +IGK G T+K +QE + V
Sbjct: 137 AKRLLGQIVDRCRNGPGFHNDIDGNSTIQEILIPASKVGLVIGKGGETIKQLQERTG--V 194
Query: 256 RVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
+++ +D P+ D+ + + GD V +A E++ +R+
Sbjct: 195 KMVMIQDGPL-PTGADKPLRITGDPFKVQQAREMVLEIIRE 234
Score = 129 (50.5 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 51/170 (30%), Positives = 82/170 (48%)
Query: 128 GESVFR-MLVPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGP-PGTTERAVMISAKEE 184
G S + +L+PA KVG +IG+ GE IK++ E T + + I DGP P ++ + I+ +
Sbjct: 160 GNSTIQEILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITG--D 217
Query: 185 PESSLPPAMDGLLRV--HKRIVD--GLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQ 240
P + A + +L + K D G+ D S A G GG + VP G +IG+
Sbjct: 218 P-FKVQQAREMVLEIIREKDQADFRGVRGDFS-ARVG-GGSIEVS--VPRFAVGIVIGRN 272
Query: 241 GGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
G +K IQ + VR+ + P + +R +V+G A +I
Sbjct: 273 GEMIKKIQNDAG--VRI---QFKPDDGISPERAAQVMGPPDRCQHAAHVI 317
Score = 75 (31.5 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 27/109 (24%), Positives = 44/109 (40%)
Query: 396 PSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEIS 452
P + ++T +P VIG G +I I + SGA V +Q P I
Sbjct: 351 PGGVQEITYT--VPADKCGLVIGKGGDNIKSINQQSGAHVELQRNPPPNTDPNLRIFTIR 408
Query: 453 GTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSN 501
G Q++ A+ LI + + +GA G +P++ +P N
Sbjct: 409 GIPQQIEVARHLIDEKVGGTS------LGAPGAFGQSPFSQPPAAPHQN 451
Score = 64 (27.6 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 15/68 (22%), Positives = 28/68 (41%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQL 464
++ +P VIG G I I+ +G + + G+ E ++ G + Q A +
Sbjct: 257 EVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHV 316
Query: 465 IQNFMAEA 472
I + A
Sbjct: 317 INELILTA 324
Score = 47 (21.6 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 19/75 (25%), Positives = 28/75 (37%)
Query: 441 RGVPGEMTVEISGTASQVQT---AQQLIQNFMAEAAAPSQAQMGA----SADQGYNPY-A 492
RGV G+ + + G + +V A ++ E Q G D G +P A
Sbjct: 241 RGVRGDFSARVGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERA 300
Query: 493 SMYGSPPSNPGHAGH 507
+ PP HA H
Sbjct: 301 AQVMGPPDRCQHAAH 315
>UNIPROTKB|F8W1G6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021049
Ensembl:ENST00000546652 ArrayExpress:F8W1G6 Bgee:F8W1G6
Uniprot:F8W1G6
Length = 202
Score = 170 (64.9 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 42/117 (35%), Positives = 73/117 (62%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER + ++ P +++ A
Sbjct: 14 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKA 68
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQE 249
++ ++ + + S +++ + + V+ +L+VPASQ GSLIGK G +K I+E
Sbjct: 69 FAMII---DKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 122
>UNIPROTKB|F1M8T3 [details] [associations]
symbol:F1M8T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 IPI:IPI00780141
Ensembl:ENSRNOT00000055638 OMA:SISEGNC Uniprot:F1M8T3
Length = 214
Score = 170 (64.9 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 47/158 (29%), Positives = 86/158 (54%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+ GE +KK+ +E+ ARI I +G ER + ++ P
Sbjct: 7 RLLMHGKEVGSIIGKDGESVKKMRKESGARISISEG--NCPERIITLAG--------PTN 56
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
+ ++ + + S +++ + + +V+ L+VPASQ GSLIGK G +K I+E++
Sbjct: 57 FKSFAMIIDKLEEDISSSMTNSTAASRPRVTVWLVVPASQCGSLIGKGGCKIKEIRESTG 116
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
V+V G + LP +R + + G + + ++ I
Sbjct: 117 VQVQVAG-DMLPN---STERAITIAGIPQSIIECVKQI 150
>ZFIN|ZDB-GENE-080211-1 [details] [associations]
symbol:nova2 "neuro-oncological ventral antigen 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-080211-1 GO:GO:0003723 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 EMBL:AY597523
IPI:IPI01006797 UniGene:Dr.77006 OrthoDB:EOG4D26RK
ArrayExpress:Q53B45 Uniprot:Q53B45
Length = 473
Score = 182 (69.1 bits), Expect = 6.6e-12, Sum P(2) = 6.6e-12
Identities = 58/169 (34%), Positives = 88/169 (52%)
Query: 128 GESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKIL---DGPPGTTERAVMISAKEE 184
GE ++L+P+ GSIIG+ G+ I ++ +ET A IK+ D PGTTER +I E
Sbjct: 61 GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVE 120
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGG--KVS-TKLLVPASQAGSLIGKQG 241
+++ + +R + + S P T +V KL+VP S AG +IGK G
Sbjct: 121 ALNNVHDFIAEKVREMPQSAQKTEPVSILQPQTTVNPDRVKQAKLVVPNSTAGLIIGKGG 180
Query: 242 GTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
TVK++ E S V++ D LQ+ RVV + G+ KA+E+I
Sbjct: 181 ATVKAVMEQSGAWVQLSQKPD--GINLQE-RVVTISGEPEQNRKAVEII 226
Score = 51 (23.0 bits), Expect = 6.6e-12, Sum P(2) = 6.6e-12
Identities = 13/54 (24%), Positives = 29/54 (53%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG--VPGEMTVEISGTAS 456
++ +P + A++G G ++ + +GA + I + +G VPG +++ T S
Sbjct: 420 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISK-KGEFVPGTRNRKVTITGS 472
>UNIPROTKB|A6QP83 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
GeneTree:ENSGT00650000093048 CTD:8939 OMA:AAPHQNT OrthoDB:EOG4X97H1
EMBL:DAAA02032235 EMBL:DAAA02032236 EMBL:BC149198 IPI:IPI00714784
RefSeq:NP_001094687.1 UniGene:Bt.2190 SMR:A6QP83
Ensembl:ENSBTAT00000017383 GeneID:541080 KEGG:bta:541080
InParanoid:A6QP83 NextBio:20878996 Uniprot:A6QP83
Length = 572
Score = 156 (60.0 bits), Expect = 8.5e-12, Sum P(2) = 8.5e-12
Identities = 48/161 (29%), Positives = 82/161 (50%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP + VG IIGR GE I +I E+ +I+I G ER +++ PES ++
Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGT--PES-----IEQ 136
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
R+ +IVD + G ++ +PAS+ G +IGK G T+K +QE + V
Sbjct: 137 AKRLLGQIVDRCRNGPGFHNDVDGNSTVQEIPIPASKVGLVIGKGGETIKQLQERTG--V 194
Query: 256 RVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
+++ +D P+ D+ + + GD V +A E++ +R+
Sbjct: 195 KMVMIQDGPL-PTGADKPLRITGDPFKVQQAREMVLEIIRE 234
Score = 123 (48.4 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 50/170 (29%), Positives = 82/170 (48%)
Query: 128 GESVFRML-VPAQKVGSIIGRKGEFIKKIVEETRAR-IKILDGP-PGTTERAVMISAKEE 184
G S + + +PA KVG +IG+ GE IK++ E T + + I DGP P ++ + I+ +
Sbjct: 160 GNSTVQEIPIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITG--D 217
Query: 185 PESSLPPAMDGLLRV--HKRIVD--GLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQ 240
P + A + +L + K D G+ D S S GG S ++ VP G +IG+
Sbjct: 218 P-FKVQQAREMVLEIIREKDQADFRGVRGDFS---SRMGGG-SIEVSVPRFAVGIVIGRN 272
Query: 241 GGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
G +K IQ + VR+ + P + +R +V+G A +I
Sbjct: 273 GEMIKKIQNDAG--VRI---QFKPDDGISPERAAQVMGPPDRCQHAAHVI 317
Score = 81 (33.6 bits), Expect = 8.5e-12, Sum P(2) = 8.5e-12
Identities = 30/110 (27%), Positives = 45/110 (40%)
Query: 395 TPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGV---PGEMTVEI 451
TP I +VT +P VIG G +I I + SGA V +Q P I
Sbjct: 350 TPGGIQEVTYT--VPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPSTDPNLRIFTI 407
Query: 452 SGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSN 501
G Q++ A+ LI + + +GA G +P++ +P N
Sbjct: 408 RGLPPQIEVARHLIDEKVGGTS------IGAPGPFGQSPFSQPPAAPHQN 451
Score = 64 (27.6 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 15/68 (22%), Positives = 28/68 (41%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQL 464
++ +P VIG G I I+ +G + + G+ E ++ G + Q A +
Sbjct: 257 EVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHV 316
Query: 465 IQNFMAEA 472
I + A
Sbjct: 317 ISELILTA 324
>UNIPROTKB|F1NWN2 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 EMBL:AADN02024285
EMBL:AADN02024286 IPI:IPI00599184 Ensembl:ENSGALT00000010541
Uniprot:F1NWN2
Length = 551
Score = 161 (61.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 53/211 (25%), Positives = 99/211 (46%)
Query: 87 HVPEDQVPEDIVPEDSQLQEKQENEVNLAVG-STEKKWPGWPGESVFRMLVPAQKVGSII 145
++P+++V P+ S+ E + G S++ K +P RMLVP Q VG+II
Sbjct: 127 YIPDEEVSSPPPPQRSRRGGHASREQGSSPGGSSQPKQLDFP----LRMLVPTQFVGAII 182
Query: 146 GRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVD 205
G++G IK + ++T++++ I R A E+P ++ +G + I+D
Sbjct: 183 GKEGLTIKNLTKQTQSKVDI--------HRKENAGAAEKP-ITIHATPEGCSEACRMILD 233
Query: 206 GLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPV 265
+ ++ S ++ K+L S G LIGK+G +K I++ + + + +DL +
Sbjct: 234 IMQKEADETKSAE--EIPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQDLTI 291
Query: 266 FALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
+ +R + V G A I LR+
Sbjct: 292 Y--NPERTITVKGSTEACSNAEVEIMKKLRE 320
Score = 148 (57.2 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 45/153 (29%), Positives = 75/153 (49%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP-PGTTERAVMISAKEEP 185
P + V + +P Q VG+IIG+KG+ IK++ A IKI P TER V+I+
Sbjct: 376 PEQEVVNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITG---- 431
Query: 186 ESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVK 245
PP + + RI L ++ P K+ + VP+ AG +IGK G TV
Sbjct: 432 ----PP--EAQFKAQGRIFGKLKEENFFNPKEEV-KLEAHIKVPSFAAGRVIGKGGKTVN 484
Query: 246 SIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+Q ++ V ++ + P ++ +V+++G
Sbjct: 485 ELQNLTSAEV-IVPRDQTP--DENEEVIVKIIG 514
Score = 73 (30.8 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 24/94 (25%), Positives = 43/94 (45%)
Query: 396 PSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISG 453
P ++ +++P A VIG G +++ ++ + A V + +T E+ V+I G
Sbjct: 455 PKEEVKLEAHIKVPSFAAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVKIIG 514
Query: 454 TASQVQTAQQLIQNFMAEAAAPSQAQ-MGASADQ 486
QTAQ+ I+ + + Q GA A Q
Sbjct: 515 HFFASQTAQRKIREIVQQVKQQEQKHAQGAPASQ 548
Score = 58 (25.5 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPG-EMTVEISG 453
IP A+IG G I + R +GA++ I G E V I+G
Sbjct: 385 IPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITG 431
Score = 38 (18.4 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 475 PSQA-QMGASADQGYNPYASM 494
PS A GA+A Y+P+A +
Sbjct: 355 PSSAGARGAAAAAPYHPFAQL 375
>UNIPROTKB|F8VRG9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022480
ProteinModelPortal:F8VRG9 SMR:F8VRG9 PRIDE:F8VRG9
Ensembl:ENST00000552083 ArrayExpress:F8VRG9 Bgee:F8VRG9
Uniprot:F8VRG9
Length = 323
Score = 149 (57.5 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 69/286 (24%), Positives = 117/286 (40%)
Query: 199 VHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVL 258
V K + + S +++ + + V+ +L+VPASQ GSLIGK G +K I+E++ V+V
Sbjct: 36 VKKMREEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA 95
Query: 259 GAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVDRSIIPLFEMHMQMPNPQM 318
G + LP +R + + G + + ++ I + + IP P P
Sbjct: 96 G-DMLPN---STERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPY------RPKPSS 145
Query: 319 DHIXXXXXXXXXXXXXXXXXXXXXH-----NPQYMPPPRQAESYYPPADLPPPMEKQPHQ 373
+ NP PP +A + +P P + HQ
Sbjct: 146 SPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLHQ 205
Query: 374 GISAYGREAPVNVHGSSN----AQSTPSM---------ITQVTQ-QMQIPLSYADAVIGT 419
++ P+ HG++ S+P + Q T ++ IP +IG
Sbjct: 206 -LAMQQSHFPMT-HGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGR 263
Query: 420 AGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLI 465
GA I+ IR+ SGA + I + V I+G+A+ + AQ LI
Sbjct: 264 QGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 309
Score = 77 (32.2 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEE 158
R+L+ ++VGSIIG+KGE +KK+ EE
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREE 42
>UNIPROTKB|F1NVW3 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0044430 "cytoskeletal part" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:AADN02024285 EMBL:AADN02024286
IPI:IPI00581668 Ensembl:ENSGALT00000022629 Uniprot:F1NVW3
Length = 573
Score = 161 (61.7 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 53/211 (25%), Positives = 99/211 (46%)
Query: 87 HVPEDQVPEDIVPEDSQLQEKQENEVNLAVG-STEKKWPGWPGESVFRMLVPAQKVGSII 145
++P+++V P+ S+ E + G S++ K +P RMLVP Q VG+II
Sbjct: 127 YIPDEEVSSPPPPQRSRRGGHASREQGSSPGGSSQPKQLDFP----LRMLVPTQFVGAII 182
Query: 146 GRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVD 205
G++G IK + ++T++++ I R A E+P ++ +G + I+D
Sbjct: 183 GKEGLTIKNLTKQTQSKVDI--------HRKENAGAAEKP-ITIHATPEGCSEACRMILD 233
Query: 206 GLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPV 265
+ ++ S ++ K+L S G LIGK+G +K I++ + + + +DL +
Sbjct: 234 IMQKEADETKSAE--EIPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPLQDLTI 291
Query: 266 FALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
+ +R + V G A I LR+
Sbjct: 292 Y--NPERTITVKGSTEACSNAEVEIMKKLRE 320
Score = 150 (57.9 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 48/164 (29%), Positives = 80/164 (48%)
Query: 116 VGSTEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP-PGTTE 174
VG+ + P P + V + +P Q VG+IIG+KG+ IK++ A IKI P TE
Sbjct: 388 VGAFPHQHP-LPEQEVVNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDATE 446
Query: 175 RAVMISAKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAG 234
R V+I+ PP + + RI L ++ P K+ + VP+ AG
Sbjct: 447 RMVIITG--------PP--EAQFKAQGRIFGKLKEENFFNPKEEV-KLEAHIKVPSFAAG 495
Query: 235 SLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+IGK G TV +Q ++ V ++ + P ++ +V+++G
Sbjct: 496 RVIGKGGKTVNELQNLTSAEV-IVPRDQTP--DENEEVIVKIIG 536
Score = 73 (30.8 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 24/94 (25%), Positives = 43/94 (45%)
Query: 396 PSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISG 453
P ++ +++P A VIG G +++ ++ + A V + +T E+ V+I G
Sbjct: 477 PKEEVKLEAHIKVPSFAAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVKIIG 536
Query: 454 TASQVQTAQQLIQNFMAEAAAPSQAQ-MGASADQ 486
QTAQ+ I+ + + Q GA A Q
Sbjct: 537 HFFASQTAQRKIREIVQQVKQQEQKHAQGAPASQ 570
Score = 58 (25.5 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPG-EMTVEISG 453
IP A+IG G I + R +GA++ I G E V I+G
Sbjct: 407 IPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITG 453
Score = 41 (19.5 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 475 PSQA-QMGASADQGYNPYAS-------MYGSPP 499
PS A GA+A Y+P+AS +YG+ P
Sbjct: 355 PSSAGARGAAAAAPYHPFASSSAYLSGLYGASP 387
>MGI|MGI:1890357 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006403 "RNA localization"
evidence=ISO] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010610
"regulation of mRNA stability involved in response to stress"
evidence=ISO] [GO:0017148 "negative regulation of translation"
evidence=ISO] [GO:0030425 "dendrite" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0045182 "translation
regulator activity" evidence=ISO] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=ISO] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
EMBL:AF061569 MGI:MGI:1890357 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 GO:GO:0030425 Gene3D:3.30.70.330
GO:GO:0045182 GO:GO:0048027 GO:GO:0003730 EMBL:AL603682
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 GO:GO:0006403 EMBL:AK044850
EMBL:AK013940 EMBL:AL606704 EMBL:BC051679 IPI:IPI00131056
RefSeq:NP_034081.1 UniGene:Mm.294769 UniGene:Mm.490105
ProteinModelPortal:O88477 SMR:O88477 DIP:DIP-48578N STRING:O88477
PhosphoSite:O88477 PaxDb:O88477 PRIDE:O88477
Ensembl:ENSMUST00000013559 GeneID:140486 KEGG:mmu:140486
UCSC:uc007lay.2 InParanoid:O88477 NextBio:369796 Bgee:O88477
Genevestigator:O88477 Uniprot:O88477
Length = 577
Score = 157 (60.3 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 49/153 (32%), Positives = 76/153 (49%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAV-MISAKEEP 185
P + + ++ +PAQ VG+IIG+KG+ IK++ A IKI PP T + V M+ P
Sbjct: 403 PEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKI--APPETPDSKVRMVVITGPP 460
Query: 186 ESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVK 245
E+ + RI L ++ P K+ T + VPAS AG +IGK G TV
Sbjct: 461 EAQF--------KAQGRIYGKLKEENFFGPKEEV-KLETHIRVPASAAGRVIGKGGKTVN 511
Query: 246 SIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+Q + V V+ + P D +V+++G
Sbjct: 512 ELQNLTAAEV-VVPRDQTP--DENDQVIVKIIG 541
Score = 154 (59.3 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 59/232 (25%), Positives = 111/232 (47%)
Query: 67 QLTEDQVPEDHVPEDQVPEDHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGW 126
QL + ++P++Q+ + PE+ S+ Q +Q + V A G+ K+ P
Sbjct: 143 QLENHALKVSYIPDEQITQG--PENGRRGGF---GSRGQPRQGSPV--AAGAPAKQQPV- 194
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKI-LDGPPGTTERAVMISAKEEP 185
+ R+LVP Q VG+IIG++G I+ I ++T+++I + G E+A+ + + E
Sbjct: 195 --DIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEG 252
Query: 186 ESSLPPAMDGLLRV-HKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
SS A +L + HK D + T +V K+L + G LIGK+G +
Sbjct: 253 CSS---ACKMILEIMHKEAKD----------TKTADEVPLKILAHNNFVGRLIGKEGRNL 299
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
K +++ + + + +DL ++ +R + V G +A + I +R+
Sbjct: 300 KKVEQDTETKITISSLQDLTLY--NPERTITVKGAIENCCRAEQEIMKKVRE 349
Score = 80 (33.2 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 35/137 (25%), Positives = 59/137 (43%)
Query: 350 PPRQAESYYPPADLPPPMEKQ-PHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQI 408
PP +S + P E Q QG YG+ N G P ++ +++
Sbjct: 443 PPETPDSKVRMVVITGPPEAQFKAQG-RIYGKLKEENFFG-------PKEEVKLETHIRV 494
Query: 409 PLSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISGTASQVQTAQQLIQ 466
P S A VIG G +++ ++ + A V + +T ++ V+I G Q AQ+ I+
Sbjct: 495 PASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIR 554
Query: 467 NFMAEAAAPSQAQMGAS 483
+ +A+ Q Q G S
Sbjct: 555 DILAQVK--QQHQKGQS 569
Score = 57 (25.1 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 26/91 (28%), Positives = 37/91 (40%)
Query: 383 PVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQ--ET 440
P +V G++ S Q Q+ IP A+IG G I + R + A++ I ET
Sbjct: 387 PSSVTGAAPYSSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET 446
Query: 441 RGVPGEMTVEISGTASQVQTAQQLIQNFMAE 471
M V I+G AQ I + E
Sbjct: 447 PDSKVRMVV-ITGPPEAQFKAQGRIYGKLKE 476
>ZFIN|ZDB-GENE-070912-44 [details] [associations]
symbol:igf2bp2a "insulin-like growth factor 2 mRNA
binding protein 2a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-070912-44
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CR936497
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG4FBHSJ EMBL:CT737147
IPI:IPI00865862 SMR:A9C3V8 Ensembl:ENSDART00000102419
Uniprot:A9C3V8
Length = 606
Score = 154 (59.3 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 53/195 (27%), Positives = 93/195 (47%)
Query: 102 SQLQEKQENEVNLAVGSTEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRA 161
S+ Q+ Q ++GS +K+ P +P RMLVP Q VG+IIG++G IK I ++T++
Sbjct: 175 SREQDSQPGTSGSSLGSRQKQ-PDFP----LRMLVPTQFVGAIIGKEGLTIKNITKQTQS 229
Query: 162 RIKILDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGK 221
++ I R A E+P ++ +G I+D + ++ +
Sbjct: 230 KVDI--------HRKENAGAAEKP-ITIHSTPEGCSTACHMIMDIMQKEA--VDTKVTED 278
Query: 222 VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDAS 281
+ K+L S G LIGK+G +K I+E + + + +DL ++ +R + V G
Sbjct: 279 IPLKILAHNSLVGRLIGKEGRNLKKIEEDTETKITISSLQDLTIY--NPERTIIVKGSIE 336
Query: 282 GVHKAMELIGSHLRK 296
+A I LR+
Sbjct: 337 ACCRAEVEIMKKLRE 351
Score = 144 (55.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 43/132 (32%), Positives = 65/132 (49%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP-PGTTERAVMISAKEEP 185
P + V + +P Q VG+IIG+KG+ IK++ A IKI P T+R V+I+
Sbjct: 431 PEQEVVYLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAESPDVTQRMVIITG---- 486
Query: 186 ESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVK 245
PP + + RI L ++ K+ T + VP+S AG +IGK G TV
Sbjct: 487 ----PP--EAQFKAQGRIFGKLKEENFFTAKEEV-KLETHIKVPSSAAGRVIGKGGKTVN 539
Query: 246 SIQEASNCIVRV 257
+Q ++ V V
Sbjct: 540 ELQNLTSAEVIV 551
Score = 80 (33.2 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 24/80 (30%), Positives = 41/80 (51%)
Query: 406 MQIPLSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISGTASQVQTAQQ 463
+++P S A VIG G +++ ++ + A V + +T E+ V+ISG QTAQ+
Sbjct: 520 IKVPSSAAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENDEVFVKISGHFFASQTAQR 579
Query: 464 LIQNFMAEAAAPSQA-QMGA 482
I+ + + Q Q GA
Sbjct: 580 KIREIIQQVKQQEQKHQQGA 599
Score = 66 (28.3 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
Identities = 30/108 (27%), Positives = 42/108 (38%)
Query: 350 PPRQAESYYPPADLPPPMEKQPHQGISAY--GREAPVNVHGSSNAQSTPSMITQVTQQMQ 407
PP PP PP P G S+ G G S+ + P Q +
Sbjct: 386 PPAAGPRGIPPV---PPTGYNPFLGHSSQLGGLYGVPPASGISHQHTAPE---QEVVYLF 439
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQ--ETRGVPGEMTVEISG 453
IP A+IG G I + R +GA++ I E+ V M + I+G
Sbjct: 440 IPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAESPDVTQRMVI-ITG 486
>FB|FBgn0262735 [details] [associations]
symbol:Imp "IGF-II mRNA-binding protein" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399 "nervous
system development" evidence=IMP] [GO:0051124 "synaptic growth at
neuromuscular junction" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IEP]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
SMART:SM00322 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0051124 GO:GO:0007283 GO:GO:0003723 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 CTD:32009 UniGene:Dm.3773 GeneID:32009
KEGG:dme:Dmel_CG1691 FlyBase:FBgn0262735 GenomeRNAi:32009
NextBio:776342 RefSeq:NP_001036268.2 ProteinModelPortal:Q0KHU2
SMR:Q0KHU2 STRING:Q0KHU2 PRIDE:Q0KHU2 UCSC:CG1691-RI
OrthoDB:EOG4RBP0X PhylomeDB:Q0KHU2 Bgee:Q0KHU2 Uniprot:Q0KHU2
Length = 588
Score = 161 (61.7 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 54/204 (26%), Positives = 103/204 (50%)
Query: 100 EDSQLQEKQ-ENEVNLAVGSTEKKWPGWPG---ESVF--RMLVPAQKVGSIIGRKGEFIK 153
E S+L +Q + + + +PG PG ++ F R+LV ++ VG+IIGR+G I+
Sbjct: 57 EGSKLHAEQLDKNQRRSQRNQRNPYPGMPGPGRQADFPLRILVQSEMVGAIIGRQGSTIR 116
Query: 154 KIVEETRARIKI-LDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDGLDSDSS 212
I +++RAR+ + G+ E+++ I PE+ A +L V ++ + + ++
Sbjct: 117 TITQQSRARVDVHRKENVGSLEKSITIYGN--PENCTN-ACKRILEVMQQ--EAISTNKG 171
Query: 213 HAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDR 272
S ++ K+L + G +IGK G T+K I + ++ + V D+ F L+ R
Sbjct: 172 EL-SPECSEICLKILAHNNLIGRIIGKSGNTIKRIMQDTDTKITVSSINDINSFNLE--R 228
Query: 273 VVEVVGDASGVHKAMELIGSHLRK 296
++ V G + +A I + LR+
Sbjct: 229 IITVKGLIENMSRAENQISTKLRQ 252
Score = 93 (37.8 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 223 STKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAE-DLPVFALQDDRVVEVVGDAS 281
+T L +P + G++IG +G ++SI SN +++ + D P+ Q +R V +VG
Sbjct: 319 TTYLYIPNNAVGAIIGTRGSHIRSIMRFSNASLKIAPLDADKPLDQ-QTERKVTIVGTPE 377
Query: 282 GVHKAMELIGSHLRK 296
G KA +I +R+
Sbjct: 378 GQWKAQYMIFEKMRE 392
Score = 72 (30.4 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 26/106 (24%), Positives = 48/106 (45%)
Query: 401 QVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVP---G--EMTVEISGTA 455
++T ++ + S +IG G ++ ++R +G+ + + E P G E V I G
Sbjct: 403 RLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALAPPSGGDEETPVHIIGLF 462
Query: 456 SQVQTAQQLIQNFMAEAAAPS-QAQMGASADQGYNPYASMYGSPPS 500
VQ+AQ+ I+ M P + A+ +Q S+ G+ S
Sbjct: 463 YSVQSAQRRIRAMMLSTNPPPITKKQKAAKEQLQQQQQSLAGAASS 508
Score = 63 (27.2 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 25/76 (32%), Positives = 33/76 (43%)
Query: 401 QVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI-----QETRGVPGEMTVEISGTA 455
Q T + IP + A+IGT G+ I I R S A++ I + E V I GT
Sbjct: 317 QETTYLYIPNNAVGAIIGTRGSHIRSIMRFSNASLKIAPLDADKPLDQQTERKVTIVGTP 376
Query: 456 SQVQTAQQLIQNFMAE 471
AQ +I M E
Sbjct: 377 EGQWKAQYMIFEKMRE 392
>TAIR|locus:2168367 [details] [associations]
symbol:RCF3 "AT5G53060" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AY062686
EMBL:BT008402 IPI:IPI00520369 RefSeq:NP_200118.3 UniGene:At.27262
ProteinModelPortal:Q8W4B1 SMR:Q8W4B1 IntAct:Q8W4B1 PaxDb:Q8W4B1
PRIDE:Q8W4B1 EnsemblPlants:AT5G53060.1 GeneID:835386
KEGG:ath:AT5G53060 TAIR:At5g53060 eggNOG:NOG293832
InParanoid:Q8W4B1 OMA:THIRILP PhylomeDB:Q8W4B1
ProtClustDB:CLSN2680526 Genevestigator:Q8W4B1 Uniprot:Q8W4B1
Length = 652
Score = 191 (72.3 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 51/181 (28%), Positives = 92/181 (50%)
Query: 129 ESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESS 188
E VF++L PA K+ ++G I + E +++ D G+ E+ + IS++E P+
Sbjct: 324 ELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAPDDP 383
Query: 189 LPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQ 248
PA + LL + +I+D L D + ++T+LLVP+ + L GK G+V I
Sbjct: 384 FFPAQEALLHIQTQIID-LIPDKDNL-------ITTRLLVPSRDSICLEGK-AGSVSEIS 434
Query: 249 EASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAME----LIGSHLRKFLVDRSII 304
+ V++L E++P A +D V+++ G+ +A+ L+ SH+ K L +
Sbjct: 435 RLTGTSVQILAREEIPRCASINDVVIQITGEIRAAREALVELTLLLRSHMFKELSQKETP 494
Query: 305 P 305
P
Sbjct: 495 P 495
Score = 163 (62.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 47/161 (29%), Positives = 75/161 (46%)
Query: 117 GSTEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERA 176
G K P + +R+L K G +IG+ G IK I + T A I + + PG ER
Sbjct: 55 GRPSKSHPETMATTTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERI 114
Query: 177 VMIS--AKEEPESSLP---PAMDGLLRVHKRIVD--------GLDSDSSHAPSGT---GG 220
+ IS + +P+ +P PA + L VH RI++ G + G GG
Sbjct: 115 IEISDNRRRDPDGRMPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGG 174
Query: 221 KVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAE 261
+V T+L+V G L+GK G ++ ++ + +R+L E
Sbjct: 175 RVVTRLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRE 215
Score = 151 (58.2 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 58/252 (23%), Positives = 107/252 (42%)
Query: 222 VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDAS 281
++T+LLVP+ + L GK G+V I + V++L E++P A +D V+++ G+
Sbjct: 409 ITTRLLVPSRDSICLEGK-AGSVSEISRLTGTSVQILAREEIPRCASINDVVIQITGEIR 467
Query: 282 GVHKAME----LIGSHLRKFLVDRSIIPLFEMHMQMPNPQMDHIXXXXXXXXXXXXXXXX 337
+A+ L+ SH+ K L + P P ++ +
Sbjct: 468 AAREALVELTLLLRSHMFKELSQKETPPA---STSTTGP-LEGVAGVMEVASSNNTIQSR 523
Query: 338 XXXXXHNPQYMPPPRQAESYYPPADLPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPS 397
N +Q + P G S + E PV +++ + P
Sbjct: 524 EGPTSSNLNL----QQVSTILP--QFKEGFGSVAKAGESEHREEVPV----TTSRMAVP- 572
Query: 398 MITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQ 457
++T+ T ++ +P + ++ + ++ I SGA+VTI E R + + ISGT Q
Sbjct: 573 LVTRSTLEVVLPEAVVPKLVTKSRNKLAQISEWSGASVTIVEDRPEETQNIIRISGTPEQ 632
Query: 458 VQTAQQLIQNFM 469
+ AQ L+Q F+
Sbjct: 633 AERAQSLLQGFI 644
Score = 130 (50.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 35/130 (26%), Positives = 65/130 (50%)
Query: 182 KEEPESSLP---PAMDGLLRVHKRIVD--------GLDSDSSHAPSGT---GGKVSTKLL 227
+ +P+ +P PA + L VH RI++ G + G GG+V T+L+
Sbjct: 122 RRDPDGRMPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLV 181
Query: 228 VPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAE-DLPVFALQDDRVVEVVGDASGVHKA 286
V G L+GK G ++ ++ + +R+L E +LP + +V++VG+ + V A
Sbjct: 182 VSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAVKNA 241
Query: 287 MELIGSHLRK 296
+ ++ S LR+
Sbjct: 242 LAIVSSRLRE 251
Score = 41 (19.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 450 EISGTA-SQVQTAQQLIQNFMAEAAAPSQAQMGASADQGY 488
E SG + + V+ + QN + + P QA+ S QG+
Sbjct: 604 EWSGASVTIVEDRPEETQNIIRISGTPEQAERAQSLLQGF 643
>UNIPROTKB|H9L0I0 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 EMBL:AADN02078253 EMBL:AADN02078254 EMBL:AADN02078255
Ensembl:ENSGALT00000023210 Uniprot:H9L0I0
Length = 426
Score = 125 (49.1 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 37/106 (34%), Positives = 50/106 (47%)
Query: 362 DLPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAG 421
D+ PP + +G S Y GS P + TQVT IP A ++IG G
Sbjct: 320 DMQPP---ELFEGGSGYDYSY-AGGRGSYGDLGGPIITTQVT----IPKDLAGSIIGKGG 371
Query: 422 ASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
I IR SGA++ I E + + I+GT Q+Q AQ L+QN
Sbjct: 372 QRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 417
Score = 106 (42.4 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 42/160 (26%), Positives = 78/160 (48%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILD--GPPGTTERAVMISAKEEPESSLP 190
R+L+ ++ G++IG+ G+ IK + + A + + D GP ER + ISA E
Sbjct: 43 RILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGP----ERILSISADTET----- 93
Query: 191 PAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEA 250
+ + K+I+ L+ + H G+ +LL+ S AG +IG +G +K ++E
Sbjct: 94 -----IGEILKKIIPTLE-EYQHY-KGSDFDCELRLLIHQSLAGGIIGVKGAKIKELREN 146
Query: 251 SNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+ +++ E P DRVV + G V + +++I
Sbjct: 147 TQTTIKLF-QECCPH---STDRVVLIGGKPDRVVECIKII 182
Score = 91 (37.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 219 GGKV-STKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVV 277
GG + +T++ +P AGS+IGK G +K I+ S +++ D P+ +DR++ +
Sbjct: 348 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEG-SEDRIITIT 402
Query: 278 GDASGVHKAMELI 290
G + A L+
Sbjct: 403 GTQDQIQNAQYLL 415
Score = 88 (36.0 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 28/101 (27%), Positives = 49/101 (48%)
Query: 88 VPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESV---FRMLVPAQKVGSI 144
VP+ PE I+ + + E+ + T +++ + G R+L+ G I
Sbjct: 75 VPDSSGPERILSISADTETI--GEILKKIIPTLEEYQHYKGSDFDCELRLLIHQSLAGGI 132
Query: 145 IGRKGEFIKKIVEETRARIKIL-DGPPGTTERAVMISAKEE 184
IG KG IK++ E T+ IK+ + P +T+R V+I K +
Sbjct: 133 IGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPD 173
Score = 67 (28.6 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 201 KRIVDGLDSDSSHAPS-GTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLG 259
KR + ++ + + S T V ++L+ + AG++IGK G +K+++ N V V
Sbjct: 18 KRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPD 77
Query: 260 AEDLPVFALQDDRVVEVVGD 279
+ P L E +G+
Sbjct: 78 SSG-PERILSISADTETIGE 96
>UNIPROTKB|H9L242 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 OMA:INPWANG EMBL:AADN02078253 EMBL:AADN02078254
EMBL:AADN02078255 Ensembl:ENSGALT00000035757 Uniprot:H9L242
Length = 427
Score = 125 (49.1 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 37/106 (34%), Positives = 50/106 (47%)
Query: 362 DLPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAG 421
D+ PP + +G S Y GS P + TQVT IP A ++IG G
Sbjct: 320 DMQPP---ELFEGGSGYDYSY-AGGRGSYGDLGGPIITTQVT----IPKDLAGSIIGKGG 371
Query: 422 ASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
I IR SGA++ I E + + I+GT Q+Q AQ L+QN
Sbjct: 372 QRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 417
Score = 106 (42.4 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 42/160 (26%), Positives = 78/160 (48%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILD--GPPGTTERAVMISAKEEPESSLP 190
R+L+ ++ G++IG+ G+ IK + + A + + D GP ER + ISA E
Sbjct: 43 RILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGP----ERILSISADTET----- 93
Query: 191 PAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEA 250
+ + K+I+ L+ + H G+ +LL+ S AG +IG +G +K ++E
Sbjct: 94 -----IGEILKKIIPTLE-EYQHY-KGSDFDCELRLLIHQSLAGGIIGVKGAKIKELREN 146
Query: 251 SNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+ +++ E P DRVV + G V + +++I
Sbjct: 147 TQTTIKLF-QECCPH---STDRVVLIGGKPDRVVECIKII 182
Score = 96 (38.9 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 21/80 (26%), Positives = 44/80 (55%)
Query: 219 GGKV-STKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVV 277
GG + +T++ +P AGS+IGK G +K I+ S +++ D P+ +DR++ +
Sbjct: 348 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEG-SEDRIITIT 402
Query: 278 GDASGVHKAMELIGSHLRKF 297
G + A L+ + ++++
Sbjct: 403 GTQDQIQNAQYLLQNSVKQY 422
Score = 88 (36.0 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 28/101 (27%), Positives = 49/101 (48%)
Query: 88 VPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESV---FRMLVPAQKVGSI 144
VP+ PE I+ + + E+ + T +++ + G R+L+ G I
Sbjct: 75 VPDSSGPERILSISADTETI--GEILKKIIPTLEEYQHYKGSDFDCELRLLIHQSLAGGI 132
Query: 145 IGRKGEFIKKIVEETRARIKIL-DGPPGTTERAVMISAKEE 184
IG KG IK++ E T+ IK+ + P +T+R V+I K +
Sbjct: 133 IGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPD 173
Score = 67 (28.6 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 201 KRIVDGLDSDSSHAPS-GTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLG 259
KR + ++ + + S T V ++L+ + AG++IGK G +K+++ N V V
Sbjct: 18 KRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPD 77
Query: 260 AEDLPVFALQDDRVVEVVGD 279
+ P L E +G+
Sbjct: 78 SSG-PERILSISADTETIGE 96
>UNIPROTKB|Q5ZIQ3 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:NOG285495
HOGENOM:HOG000019764 HOVERGEN:HBG051916 KO:K12886 OrthoDB:EOG49KFRD
InterPro:IPR012987 Pfam:PF08067 EMBL:AJ720731 IPI:IPI00593692
RefSeq:NP_001026556.1 UniGene:Gga.28787 HSSP:P61978
ProteinModelPortal:Q5ZIQ3 SMR:Q5ZIQ3 STRING:Q5ZIQ3 PRIDE:Q5ZIQ3
GeneID:426516 KEGG:gga:426516 CTD:380255 InParanoid:Q5ZIQ3
NextBio:20828064 Uniprot:Q5ZIQ3
Length = 427
Score = 125 (49.1 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 37/106 (34%), Positives = 50/106 (47%)
Query: 362 DLPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAG 421
D+ PP + +G S Y GS P + TQVT IP A ++IG G
Sbjct: 320 DMQPP---ELFEGGSGYDYSY-AGGRGSYGDLGGPIITTQVT----IPKDLAGSIIGKGG 371
Query: 422 ASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
I IR SGA++ I E + + I+GT Q+Q AQ L+QN
Sbjct: 372 QRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 417
Score = 106 (42.4 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 42/160 (26%), Positives = 78/160 (48%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILD--GPPGTTERAVMISAKEEPESSLP 190
R+L+ ++ G++IG+ G+ IK + + A + + D GP ER + ISA E
Sbjct: 43 RILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGP----ERILSISADTET----- 93
Query: 191 PAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEA 250
+ + K+I+ L+ + H G+ +LL+ S AG +IG +G +K ++E
Sbjct: 94 -----IGEILKKIIPTLE-EYQHY-KGSDFDCELRLLIHQSLAGGIIGVKGAKIKELREN 146
Query: 251 SNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+ +++ E P DRVV + G V + +++I
Sbjct: 147 TQTTIKLF-QECCPH---STDRVVLIGGKPDRVVECIKII 182
Score = 96 (38.9 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 21/80 (26%), Positives = 44/80 (55%)
Query: 219 GGKV-STKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVV 277
GG + +T++ +P AGS+IGK G +K I+ S +++ D P+ +DR++ +
Sbjct: 348 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEG-SEDRIITIT 402
Query: 278 GDASGVHKAMELIGSHLRKF 297
G + A L+ + ++++
Sbjct: 403 GTQDQIQNAQYLLQNSVKQY 422
Score = 88 (36.0 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 28/101 (27%), Positives = 49/101 (48%)
Query: 88 VPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESV---FRMLVPAQKVGSI 144
VP+ PE I+ + + E+ + T +++ + G R+L+ G I
Sbjct: 75 VPDSSGPERILSISADTETI--GEILKKIIPTLEEYQHYKGSDFDCELRLLIHQSLAGGI 132
Query: 145 IGRKGEFIKKIVEETRARIKIL-DGPPGTTERAVMISAKEE 184
IG KG IK++ E T+ IK+ + P +T+R V+I K +
Sbjct: 133 IGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPD 173
Score = 67 (28.6 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 201 KRIVDGLDSDSSHAPS-GTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLG 259
KR + ++ + + S T V ++L+ + AG++IGK G +K+++ N V V
Sbjct: 18 KRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPD 77
Query: 260 AEDLPVFALQDDRVVEVVGD 279
+ P L E +G+
Sbjct: 78 SSG-PERILSISADTETIGE 96
>UNIPROTKB|F1PDI8 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 CTD:10644 OMA:KQQEQKH
EMBL:AAEX03017290 EMBL:AAEX03017291 EMBL:AAEX03017292
RefSeq:XP_535832.3 Ensembl:ENSCAFT00000021148 GeneID:478662
KEGG:cfa:478662 Uniprot:F1PDI8
Length = 531
Score = 158 (60.7 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 55/212 (25%), Positives = 99/212 (46%)
Query: 87 HVPEDQVPEDIVPEDSQLQEKQENEVNLAVG-STEKKWPGWPGESVFRMLVPAQKVGSII 145
++P+++V P+ +Q + E A G S++ + +P R+LVP Q VG+II
Sbjct: 86 YIPDEEVSSPTPPQRAQRGDHSSREQGHAPGGSSQARQIDFP----LRILVPTQFVGAII 141
Query: 146 GRKGEFIKKIVEETRARIKI-LDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIV 204
G++G IK I ++T++R+ I G E+ V I A E S A +L + ++
Sbjct: 142 GKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSE---ACRMILEIMQK-- 196
Query: 205 DGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLP 264
++D + ++ K+L G LIGK+G +K I+ + + + +DL
Sbjct: 197 ---EADETKLAE----EIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS 249
Query: 265 VFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
++ +R + V G A I LR+
Sbjct: 250 IY--NPERTITVKGTVEACANAEVEIMKKLRE 279
Score = 147 (56.8 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 44/154 (28%), Positives = 75/154 (48%)
Query: 126 WPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP-PGTTERAVMISAKEE 184
+P + + + +P Q VG+IIG+KG IK++ A IKI P +ER V+I+
Sbjct: 356 YPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG--- 412
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
PP + + RI L ++ P K+ + VP+S AG +IGK G TV
Sbjct: 413 -----PP--EAQFKAQGRIFGKLKEENFFNPKEEV-KLEAHIRVPSSTAGRVIGKGGKTV 464
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+Q ++ V ++ + P ++ +V ++G
Sbjct: 465 NELQNLTSAEV-IVPRDQTP--DENEEVIVRIIG 495
Score = 72 (30.4 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 32/108 (29%), Positives = 43/108 (39%)
Query: 348 MPPPRQAESYYPPADLPPPMEKQPHQGISAYGREAPVNVHGS-SNAQSTPSMITQVTQQM 406
+PPP PPA PP H G + P + G + S P Q +
Sbjct: 313 LPPPAGPRGA-PPA--PPYHPFATHSGY--FSSLYPPHQFGPFPHHHSYPE---QEIVNL 364
Query: 407 QIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVP-GEMTVEISG 453
IP A+IG GA I + R +GA++ I G E V I+G
Sbjct: 365 FIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG 412
Score = 71 (30.1 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 23/93 (24%), Positives = 41/93 (44%)
Query: 396 PSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISG 453
P ++ +++P S A VIG G +++ ++ + A V + +T E+ V I G
Sbjct: 436 PKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIG 495
Query: 454 TASQVQTAQQLIQNFMAEAAAPSQAQMGASADQ 486
QTAQ+ I+ + + Q A Q
Sbjct: 496 HFFASQTAQRKIREIVQQVKQQEQKYPQGVASQ 528
>UNIPROTKB|O42254 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182
GO:GO:0048027 GO:GO:0003730 GO:GO:0010494 GO:GO:0070937
GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725 EMBL:AF026527
IPI:IPI00576155 RefSeq:NP_990402.1 UniGene:Gga.567
ProteinModelPortal:O42254 SMR:O42254 Ensembl:ENSGALT00000001975
GeneID:395953 KEGG:gga:395953 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 InParanoid:O42254
OMA:EQETVHV OrthoDB:EOG405S0T NextBio:20816018 GO:GO:0010610
Uniprot:O42254
Length = 576
Score = 152 (58.6 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 56/261 (21%), Positives = 109/261 (41%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKI-LDGPPGTTERAVMISAKEEP 185
P + R+LVP Q VG+IIG++G I+ I ++T+++I + G E+A+ I + P
Sbjct: 193 PVDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISIHST--P 250
Query: 186 ESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVK 245
E G K I++ + ++ T +V K+L + G LIGK+G +K
Sbjct: 251 E--------GCSAACKMILEIMQKEAKDTK--TADEVPLKILAHNNFVGRLIGKEGRNLK 300
Query: 246 SIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVDRSIIP 305
+++ + + + +DL ++ +R + V G KA + I +R+ +
Sbjct: 301 KVEQDTETKITISSLQDLTLY--NPERTITVKGSIENCCKAEQEIMKKVREAYENDVAAM 358
Query: 306 LFEMHMQMPNPQMDHIXXXXXXXXXXXXXXXXXXXXXHNPQYMPPPRQAESYYPPADLPP 365
+ H+ +P + + +MPP ++ + PA
Sbjct: 359 SLQSHL-IPGLNLAAVGLFPASSNAVPPPPSSVSGAAPYSSFMPPEQETVHVFIPAQAVG 417
Query: 366 PMEKQPHQGISAYGREAPVNV 386
+ + Q I R A ++
Sbjct: 418 AIIGKKGQHIKQLSRFASASI 438
Score = 151 (58.2 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 48/153 (31%), Positives = 74/153 (48%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAV-MISAKEEP 185
P + + +PAQ VG+IIG+KG+ IK++ A IKI PP T + V M+ P
Sbjct: 402 PEQETVHVFIPAQAVGAIIGKKGQHIKQLSRFASASIKI--APPETPDSKVRMVVITGPP 459
Query: 186 ESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVK 245
E+ + RI L ++ P K+ T + VPAS AG +IGK G TV
Sbjct: 460 EAQF--------KAQGRIYGKLKEENFFGPKEEV-KLETHIRVPASAAGRVIGKGGKTVN 510
Query: 246 SIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+Q + V V+ + P + +V+++G
Sbjct: 511 ELQNLTAAEV-VVPRDQTP--DENEQVIVKIIG 540
Score = 79 (32.9 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 35/137 (25%), Positives = 59/137 (43%)
Query: 350 PPRQAESYYPPADLPPPMEKQ-PHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQI 408
PP +S + P E Q QG YG+ N G P ++ +++
Sbjct: 442 PPETPDSKVRMVVITGPPEAQFKAQG-RIYGKLKEENFFG-------PKEEVKLETHIRV 493
Query: 409 PLSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISGTASQVQTAQQLIQ 466
P S A VIG G +++ ++ + A V + +T ++ V+I G Q AQ+ I+
Sbjct: 494 PASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENEQVIVKIIGHFYASQMAQRKIR 553
Query: 467 NFMAEAAAPSQAQMGAS 483
+ +A+ Q Q G S
Sbjct: 554 DILAQVK--QQHQKGQS 568
>UNIPROTKB|E1C453 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0010988 "regulation
of low-density lipoprotein particle clearance" evidence=IEA]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IEA] [GO:0048260
"positive regulation of receptor-mediated endocytosis"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0072369 "regulation of lipid transport by
positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 KO:K12886 OMA:KALRTDX
InterPro:IPR012987 Pfam:PF08067 EMBL:AADN02064910 EMBL:AADN02064911
IPI:IPI00684854 RefSeq:XP_003643054.1 Ensembl:ENSGALT00000020563
GeneID:427458 KEGG:gga:427458 Uniprot:E1C453
Length = 426
Score = 125 (49.1 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 37/106 (34%), Positives = 50/106 (47%)
Query: 362 DLPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAG 421
D+ PP + +G S Y GS P + TQVT IP A ++IG G
Sbjct: 319 DMQPP---ELFEGGSGYDYSY-AGGRGSYGDLGGPIITTQVT----IPKDLAGSIIGKGG 370
Query: 422 ASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
I IR SGA++ I E + + I+GT Q+Q AQ L+QN
Sbjct: 371 QRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 416
Score = 104 (41.7 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 42/160 (26%), Positives = 78/160 (48%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILD--GPPGTTERAVMISAKEEPESSLP 190
R+L+ ++ G++IG+ G+ IK + + A + + D GP ER + ISA E
Sbjct: 43 RILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGP----ERILSISADIET----- 93
Query: 191 PAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEA 250
+ + K+I+ L+ + H G+ +LL+ S AG +IG +G +K ++E
Sbjct: 94 -----IGEILKKIIPTLE-EYQHY-KGSDFDCELRLLIHQSLAGGIIGVKGAKIKELREN 146
Query: 251 SNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+ +++ E P DRVV + G V + +++I
Sbjct: 147 TQTTIKLF-QECCPH---STDRVVLIGGKPDRVVECIKII 182
Score = 96 (38.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 21/80 (26%), Positives = 44/80 (55%)
Query: 219 GGKV-STKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVV 277
GG + +T++ +P AGS+IGK G +K I+ S +++ D P+ +DR++ +
Sbjct: 347 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEG-SEDRIITIT 401
Query: 278 GDASGVHKAMELIGSHLRKF 297
G + A L+ + ++++
Sbjct: 402 GTQDQIQNAQYLLQNSVKQY 421
Score = 91 (37.1 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 88 VPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESV---FRMLVPAQKVGSI 144
VP+ PE I+ + ++ E+ + T +++ + G R+L+ G I
Sbjct: 75 VPDSSGPERILSISADIETI--GEILKKIIPTLEEYQHYKGSDFDCELRLLIHQSLAGGI 132
Query: 145 IGRKGEFIKKIVEETRARIKIL-DGPPGTTERAVMISAKEE 184
IG KG IK++ E T+ IK+ + P +T+R V+I K +
Sbjct: 133 IGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPD 173
Score = 70 (29.7 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 20/80 (25%), Positives = 39/80 (48%)
Query: 201 KRIVDGLDSDSSHAPS-GTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLG 259
KR + ++ + + S T V ++L+ + AG++IGK G +K+++ N V V
Sbjct: 18 KRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPD 77
Query: 260 AEDLPVFALQDDRVVEVVGD 279
+ P L +E +G+
Sbjct: 78 SSG-PERILSISADIETIGE 96
>UNIPROTKB|F1LT74 [details] [associations]
symbol:F1LT74 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 IPI:IPI00568045
Ensembl:ENSRNOT00000050969 OMA:YNISMIA Uniprot:F1LT74
Length = 320
Score = 136 (52.9 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 43/128 (33%), Positives = 68/128 (53%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSII + E +KK+ E++ ARI I +G ER + ++ P
Sbjct: 20 RLLMHGKEVGSIIRKSRESVKKLQEKS-ARINISEG--NCPERIITLAG---------PT 67
Query: 193 MDGLLRVHKRIVDGLDSD-SSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEAS 251
+ + + I+D + D SS + T +VPASQ GSLIGK GT+K I+E++
Sbjct: 68 -NAIFKAFAMIIDKPEEDISSSMTNSTAASRPPVTVVPASQCGSLIGK--GTIKEIREST 124
Query: 252 NCIVRVLG 259
V+ G
Sbjct: 125 GAQVQAAG 132
Score = 87 (35.7 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 33/122 (27%), Positives = 52/122 (42%)
Query: 350 PPRQA---ESYY--PPADLPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQ 404
PP +A + +Y P DL + + G S +P V G + +
Sbjct: 192 PPLEACTIQGHYAMPQPDLTKLHQTHGNTGFSGIESSSP-EVKGYLGLDESAQT---TSH 247
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATV-TIQETRGVPGEMTVEISGTASQVQTAQQ 463
++ +P +IG GA I+ IR+ SGA + T G + V I+G A+ + AQ
Sbjct: 248 ELTLPNDLIGCIIGRQGAKINEIRQMSGAQIKTANPVEGST-DRQVTITGPAASISLAQY 306
Query: 464 LI 465
LI
Sbjct: 307 LI 308
Score = 78 (32.5 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 135 LVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP-PGTTERAVMIS 180
+VPA + GS+IG KG IK+I E T A+++ P +TERA+ I+
Sbjct: 102 VVPASQCGSLIG-KGT-IKEIRESTGAQVQAAGNMLPNSTERAITIA 146
Score = 72 (30.4 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 23/85 (27%), Positives = 42/85 (49%)
Query: 207 LDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAE-DLPV 265
LD D+ G ++ +LL+ + GS+I K +VK +QE S R+ +E + P
Sbjct: 2 LDMDTGVIEGGLNVTLTIRLLMHGKEVGSIIRKSRESVKKLQEKS---ARINISEGNCP- 57
Query: 266 FALQDDRVVEVVGDASGVHKAMELI 290
+R++ + G + + KA +I
Sbjct: 58 -----ERIITLAGPTNAIFKAFAMI 77
>ZFIN|ZDB-GENE-040426-1923 [details] [associations]
symbol:hnrpkl "heterogeneous nuclear
ribonucleoprotein K, like" species:7955 "Danio rerio" [GO:0003723
"RNA binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-1923 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG051916 InterPro:IPR012987 Pfam:PF08067 EMBL:BC096867
IPI:IPI00493887 UniGene:Dr.47275 ProteinModelPortal:Q4V9J6
SMR:Q4V9J6 STRING:Q4V9J6 InParanoid:Q4V9J6 NextBio:20817897
ArrayExpress:Q4V9J6 Uniprot:Q4V9J6
Length = 431
Score = 122 (48.0 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 402 VTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTA 461
+T Q+ IP A ++IG G I IR SGA++ I E + + I+GT Q+Q A
Sbjct: 356 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 415
Query: 462 QQLIQN 467
Q L+QN
Sbjct: 416 QYLLQN 421
Score = 107 (42.7 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 43/160 (26%), Positives = 79/160 (49%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILD--GPPGTTERAVMISAKEEPESSLP 190
R+L+ ++ G++IG+ G+ IK + + A + + D GP ER + +SA
Sbjct: 47 RVLLRSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGP----ERILSVSAD-------- 94
Query: 191 PAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEA 250
+D + + +I+ L+ + H SGT +LL+ S AG +IG +G +K ++E
Sbjct: 95 --IDTIGEILLKIIPTLE-EYQHY-SGTDFDCELRLLIHQSLAGGIIGVKGAKIKELREN 150
Query: 251 SNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+ +++ E P DRVV V G V + +++I
Sbjct: 151 TQTTIKLF-QECCPH---STDRVVLVGGKPERVVECIKVI 186
Score = 69 (29.3 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 20/80 (25%), Positives = 39/80 (48%)
Query: 201 KRIVDGLDSDSSHAPS-GTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLG 259
KR + +D + + S T V ++L+ + AG++IGK G +K+++ N V V
Sbjct: 22 KRPAEDMDEEQAFKRSRNTDEMVELRVLLRSKNAGAVIGKGGKNIKALRTDYNASVSVPD 81
Query: 260 AEDLPVFALQDDRVVEVVGD 279
+ P L ++ +G+
Sbjct: 82 SSG-PERILSVSADIDTIGE 100
>UNIPROTKB|K7GQ87 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035397 Uniprot:K7GQ87
Length = 498
Score = 156 (60.0 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 55/212 (25%), Positives = 99/212 (46%)
Query: 87 HVPEDQVPEDIVPEDSQLQEKQENEVNLAVG-STEKKWPGWPGESVFRMLVPAQKVGSII 145
++P+++V P+ +Q + E A G S++ + +P R+LVP Q VG+II
Sbjct: 53 YIPDEEVSSPSPPQRAQRGDHSSREQGHAPGGSSQARQIDFP----LRILVPTQFVGAII 108
Query: 146 GRKGEFIKKIVEETRARIKI-LDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIV 204
G++G IK I ++T++R+ I G E+ V I A E S A +L + ++
Sbjct: 109 GKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSE---ACRMILEIMQK-- 163
Query: 205 DGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLP 264
++D + ++ K+L G LIGK+G +K I+ + + + +DL
Sbjct: 164 ---EADETKLAE----EIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS 216
Query: 265 VFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
++ +R + V G A I LR+
Sbjct: 217 IY--NPERTITVKGTVEACANAEIEIMKKLRE 246
Score = 147 (56.8 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 44/154 (28%), Positives = 75/154 (48%)
Query: 126 WPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP-PGTTERAVMISAKEE 184
+P + + + +P Q VG+IIG+KG IK++ A IKI P +ER V+I+
Sbjct: 323 YPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG--- 379
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
PP + + RI L ++ P K+ + VP+S AG +IGK G TV
Sbjct: 380 -----PP--EAQFKAQGRIFGKLKEENFFNPKEEV-KLEAHIRVPSSTAGRVIGKGGKTV 431
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+Q ++ V ++ + P ++ +V ++G
Sbjct: 432 NELQNLTSAEV-IVPRDQTP--DENEEVIVRIIG 462
Score = 72 (30.4 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 32/108 (29%), Positives = 43/108 (39%)
Query: 348 MPPPRQAESYYPPADLPPPMEKQPHQGISAYGREAPVNVHGS-SNAQSTPSMITQVTQQM 406
+PPP PPA PP H G + P + G + S P Q +
Sbjct: 280 LPPPAGPRGA-PPA--PPYHPFATHSGY--FSSLYPPHQFGPFPHHHSYPE---QEIVNL 331
Query: 407 QIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVP-GEMTVEISG 453
IP A+IG GA I + R +GA++ I G E V I+G
Sbjct: 332 FIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG 379
Score = 71 (30.1 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 23/93 (24%), Positives = 41/93 (44%)
Query: 396 PSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISG 453
P ++ +++P S A VIG G +++ ++ + A V + +T E+ V I G
Sbjct: 403 PKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIG 462
Query: 454 TASQVQTAQQLIQNFMAEAAAPSQAQMGASADQ 486
QTAQ+ I+ + + Q A Q
Sbjct: 463 HFFASQTAQRKIREIVQQVKQQEQKYPQGVASQ 495
>UNIPROTKB|K7GQW0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035698 Uniprot:K7GQW0
Length = 477
Score = 156 (60.0 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 55/212 (25%), Positives = 99/212 (46%)
Query: 87 HVPEDQVPEDIVPEDSQLQEKQENEVNLAVG-STEKKWPGWPGESVFRMLVPAQKVGSII 145
++P+++V P+ +Q + E A G S++ + +P R+LVP Q VG+II
Sbjct: 75 YIPDEEVSSPSPPQRAQRGDHSSREQGHAPGGSSQARQIDFP----LRILVPTQFVGAII 130
Query: 146 GRKGEFIKKIVEETRARIKI-LDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIV 204
G++G IK I ++T++R+ I G E+ V I A E S A +L + ++
Sbjct: 131 GKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSE---ACRMILEIMQK-- 185
Query: 205 DGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLP 264
++D + ++ K+L G LIGK+G +K I+ + + + +DL
Sbjct: 186 ---EADETKLAE----EIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS 238
Query: 265 VFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
++ +R + V G A I LR+
Sbjct: 239 IY--NPERTITVKGTVEACANAEIEIMKKLRE 268
Score = 147 (56.8 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 44/154 (28%), Positives = 75/154 (48%)
Query: 126 WPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP-PGTTERAVMISAKEE 184
+P + + + +P Q VG+IIG+KG IK++ A IKI P +ER V+I+
Sbjct: 302 YPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG--- 358
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
PP + + RI L ++ P K+ + VP+S AG +IGK G TV
Sbjct: 359 -----PP--EAQFKAQGRIFGKLKEENFFNPKEEV-KLEAHIRVPSSTAGRVIGKGGKTV 410
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+Q ++ V ++ + P ++ +V ++G
Sbjct: 411 NELQNLTSAEV-IVPRDQTP--DENEEVIVRIIG 441
Score = 71 (30.1 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 23/93 (24%), Positives = 41/93 (44%)
Query: 396 PSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISG 453
P ++ +++P S A VIG G +++ ++ + A V + +T E+ V I G
Sbjct: 382 PKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIG 441
Query: 454 TASQVQTAQQLIQNFMAEAAAPSQAQMGASADQ 486
QTAQ+ I+ + + Q A Q
Sbjct: 442 HFFASQTAQRKIREIVQQVKQQEQKYPQGVASQ 474
Score = 63 (27.2 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVP-GEMTVEISG 453
IP A+IG GA I + R +GA++ I G E V I+G
Sbjct: 312 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG 358
>UNIPROTKB|K7GKD3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000033522 Uniprot:K7GKD3
Length = 520
Score = 156 (60.0 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
Identities = 55/212 (25%), Positives = 99/212 (46%)
Query: 87 HVPEDQVPEDIVPEDSQLQEKQENEVNLAVG-STEKKWPGWPGESVFRMLVPAQKVGSII 145
++P+++V P+ +Q + E A G S++ + +P R+LVP Q VG+II
Sbjct: 75 YIPDEEVSSPSPPQRAQRGDHSSREQGHAPGGSSQARQIDFP----LRILVPTQFVGAII 130
Query: 146 GRKGEFIKKIVEETRARIKI-LDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIV 204
G++G IK I ++T++R+ I G E+ V I A E S A +L + ++
Sbjct: 131 GKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSE---ACRMILEIMQK-- 185
Query: 205 DGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLP 264
++D + ++ K+L G LIGK+G +K I+ + + + +DL
Sbjct: 186 ---EADETKLAE----EIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS 238
Query: 265 VFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
++ +R + V G A I LR+
Sbjct: 239 IY--NPERTITVKGTVEACANAEIEIMKKLRE 268
Score = 147 (56.8 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 44/154 (28%), Positives = 75/154 (48%)
Query: 126 WPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP-PGTTERAVMISAKEE 184
+P + + + +P Q VG+IIG+KG IK++ A IKI P +ER V+I+
Sbjct: 345 YPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG--- 401
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
PP + + RI L ++ P K+ + VP+S AG +IGK G TV
Sbjct: 402 -----PP--EAQFKAQGRIFGKLKEENFFNPKEEV-KLEAHIRVPSSTAGRVIGKGGKTV 453
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+Q ++ V ++ + P ++ +V ++G
Sbjct: 454 NELQNLTSAEV-IVPRDQTP--DENEEVIVRIIG 484
Score = 72 (30.4 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
Identities = 32/108 (29%), Positives = 43/108 (39%)
Query: 348 MPPPRQAESYYPPADLPPPMEKQPHQGISAYGREAPVNVHGS-SNAQSTPSMITQVTQQM 406
+PPP PPA PP H G + P + G + S P Q +
Sbjct: 302 LPPPAGPRGA-PPA--PPYHPFATHSGY--FSSLYPPHQFGPFPHHHSYPE---QEIVNL 353
Query: 407 QIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVP-GEMTVEISG 453
IP A+IG GA I + R +GA++ I G E V I+G
Sbjct: 354 FIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG 401
Score = 71 (30.1 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 23/93 (24%), Positives = 41/93 (44%)
Query: 396 PSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISG 453
P ++ +++P S A VIG G +++ ++ + A V + +T E+ V I G
Sbjct: 425 PKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIG 484
Query: 454 TASQVQTAQQLIQNFMAEAAAPSQAQMGASADQ 486
QTAQ+ I+ + + Q A Q
Sbjct: 485 HFFASQTAQRKIREIVQQVKQQEQKYPQGVASQ 517
>UNIPROTKB|F1SFK0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:CU582974 Ensembl:ENSSSCT00000012907
Uniprot:F1SFK0
Length = 524
Score = 156 (60.0 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 55/212 (25%), Positives = 99/212 (46%)
Query: 87 HVPEDQVPEDIVPEDSQLQEKQENEVNLAVG-STEKKWPGWPGESVFRMLVPAQKVGSII 145
++P+++V P+ +Q + E A G S++ + +P R+LVP Q VG+II
Sbjct: 79 YIPDEEVSSPSPPQRAQRGDHSSREQGHAPGGSSQARQIDFP----LRILVPTQFVGAII 134
Query: 146 GRKGEFIKKIVEETRARIKI-LDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIV 204
G++G IK I ++T++R+ I G E+ V I A E S A +L + ++
Sbjct: 135 GKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSE---ACRMILEIMQK-- 189
Query: 205 DGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLP 264
++D + ++ K+L G LIGK+G +K I+ + + + +DL
Sbjct: 190 ---EADETKLAE----EIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS 242
Query: 265 VFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
++ +R + V G A I LR+
Sbjct: 243 IY--NPERTITVKGTVEACANAEIEIMKKLRE 272
Score = 147 (56.8 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 44/154 (28%), Positives = 75/154 (48%)
Query: 126 WPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP-PGTTERAVMISAKEE 184
+P + + + +P Q VG+IIG+KG IK++ A IKI P +ER V+I+
Sbjct: 349 YPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG--- 405
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
PP + + RI L ++ P K+ + VP+S AG +IGK G TV
Sbjct: 406 -----PP--EAQFKAQGRIFGKLKEENFFNPKEEV-KLEAHIRVPSSTAGRVIGKGGKTV 457
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+Q ++ V ++ + P ++ +V ++G
Sbjct: 458 NELQNLTSAEV-IVPRDQTP--DENEEVIVRIIG 488
Score = 72 (30.4 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 32/108 (29%), Positives = 43/108 (39%)
Query: 348 MPPPRQAESYYPPADLPPPMEKQPHQGISAYGREAPVNVHGS-SNAQSTPSMITQVTQQM 406
+PPP PPA PP H G + P + G + S P Q +
Sbjct: 306 LPPPAGPRGA-PPA--PPYHPFATHSGY--FSSLYPPHQFGPFPHHHSYPE---QEIVNL 357
Query: 407 QIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVP-GEMTVEISG 453
IP A+IG GA I + R +GA++ I G E V I+G
Sbjct: 358 FIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG 405
Score = 71 (30.1 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 23/93 (24%), Positives = 41/93 (44%)
Query: 396 PSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISG 453
P ++ +++P S A VIG G +++ ++ + A V + +T E+ V I G
Sbjct: 429 PKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIG 488
Query: 454 TASQVQTAQQLIQNFMAEAAAPSQAQMGASADQ 486
QTAQ+ I+ + + Q A Q
Sbjct: 489 HFFASQTAQRKIREIVQQVKQQEQKYPQGVASQ 521
>UNIPROTKB|Q3T0D0 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0072369 "regulation of
lipid transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=IEA] [GO:0045716 "positive
regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA] [GO:0010988 "regulation of
low-density lipoprotein particle clearance" evidence=IEA]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0006397 GO:GO:0003723
GO:GO:0000978 GO:GO:0001077 GO:GO:0000790 GO:GO:0048260
GO:GO:0071013 GO:GO:0045716 GO:GO:0010988 EMBL:BC102450
IPI:IPI00696554 RefSeq:NP_001029734.1 UniGene:Bt.47688
ProteinModelPortal:Q3T0D0 SMR:Q3T0D0 STRING:Q3T0D0 PRIDE:Q3T0D0
Ensembl:ENSBTAT00000028162 GeneID:528135 KEGG:bta:528135 CTD:3190
eggNOG:NOG285495 GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764
HOVERGEN:HBG051916 InParanoid:Q3T0D0 KO:K12886 OMA:KALRTDX
OrthoDB:EOG49KFRD NextBio:20874747 GO:GO:0072369 InterPro:IPR012987
Pfam:PF08067 Uniprot:Q3T0D0
Length = 464
Score = 126 (49.4 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 38/107 (35%), Positives = 51/107 (47%)
Query: 367 MEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISY 426
M +P QG S Y GS P + TQVT IP A ++IG G I
Sbjct: 359 MAYEP-QGGSGYDYSY-AGGRGSYGDLGGPIITTQVT----IPKDLAGSIIGKGGQRIKQ 412
Query: 427 IRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAA 473
IR SGA++ I E + + I+GT Q+Q AQ L+QN + + A
Sbjct: 413 IRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYA 459
Score = 101 (40.6 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 44/172 (25%), Positives = 80/172 (46%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILD--GPPGTTERAVMISAKEEP----- 185
R+L+ ++ G++IG+ G+ IK + + A + + D GP ER + ISA E
Sbjct: 46 RILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGP----ERILSISADIETIGEIL 101
Query: 186 ESSLPPAMDGLLRVHKRIVDGL--DSDSSHAPS-----GTGGKVSTKLLVPASQAGSLIG 238
+ +P +GL L +SD+ + G+ +LL+ S AG +IG
Sbjct: 102 KKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIG 161
Query: 239 KQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+G +K ++E + +++ E P DRVV + G V + +++I
Sbjct: 162 VKGAKIKELRENTQTTIKLF-QECCPQ---STDRVVLIGGKPDRVVECIKII 209
Score = 78 (32.5 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 25/99 (25%), Positives = 47/99 (47%)
Query: 183 EEPESSLPPA-MDGLLRVHKRIVDGLDSDSSHAPS-GTGGKVSTKLLVPASQAGSLIGKQ 240
E+PE + P +G KR + ++ + + S T V ++L+ + AG++IGK
Sbjct: 4 EQPEETFPNTETNG--EFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKG 61
Query: 241 GGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGD 279
G +K+++ N V V + P L +E +G+
Sbjct: 62 GKNIKALRTDYNASVSVPDSSG-PERILSISADIETIGE 99
Score = 52 (23.4 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 257 VLGAEDLPVFALQDDRVVEV-VGDASGVHKAMELIGSHLRKFLVDRSIIPLFEMHMQMPN 315
V+G + AL+ D V V D+SG + + + + + IIP E +Q+P+
Sbjct: 57 VIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPS 116
Query: 316 P 316
P
Sbjct: 117 P 117
>UNIPROTKB|E1BFI4 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171 CTD:10644
GO:GO:0044430 OMA:KQQEQKH EMBL:DAAA02001852 EMBL:DAAA02001853
EMBL:DAAA02001854 EMBL:DAAA02001855 EMBL:DAAA02001856
IPI:IPI00721408 RefSeq:NP_001179433.1 UniGene:Bt.33805
ProteinModelPortal:E1BFI4 Ensembl:ENSBTAT00000036032 GeneID:519028
KEGG:bta:519028 NextBio:20872792 Uniprot:E1BFI4
Length = 599
Score = 156 (60.0 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 55/212 (25%), Positives = 99/212 (46%)
Query: 87 HVPEDQVPEDIVPEDSQLQEKQENEVNLAVG-STEKKWPGWPGESVFRMLVPAQKVGSII 145
++P+++V P+ +Q + E A G S++ + +P R+LVP Q VG+II
Sbjct: 154 YIPDEEVSSPSPPQRAQRGDHSSREQGHAPGGSSQARQIDFP----LRILVPTQFVGAII 209
Query: 146 GRKGEFIKKIVEETRARIKI-LDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIV 204
G++G IK I ++T++R+ I G E+ V I A E S A +L + ++
Sbjct: 210 GKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSE---ACRMILEIMQK-- 264
Query: 205 DGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLP 264
++D + ++ K+L G LIGK+G +K I+ + + + +DL
Sbjct: 265 ---EADETKLAE----EIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS 317
Query: 265 VFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
++ +R + V G A I LR+
Sbjct: 318 IY--NPERTITVKGTVEACANAEIEIMKKLRE 347
Score = 147 (56.8 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 44/154 (28%), Positives = 75/154 (48%)
Query: 126 WPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP-PGTTERAVMISAKEE 184
+P + + + +P Q VG+IIG+KG IK++ A IKI P +ER V+I+
Sbjct: 424 YPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG--- 480
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
PP + + RI L ++ P K+ + VP+S AG +IGK G TV
Sbjct: 481 -----PP--EAQFKAQGRIFGKLKEENFFNPKEEV-KLEAHIRVPSSTAGRVIGKGGKTV 532
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+Q ++ V ++ + P ++ +V ++G
Sbjct: 533 NELQNLTSAEV-IVPRDQTP--DENEEVIVRIIG 563
Score = 72 (30.4 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 32/108 (29%), Positives = 43/108 (39%)
Query: 348 MPPPRQAESYYPPADLPPPMEKQPHQGISAYGREAPVNVHGS-SNAQSTPSMITQVTQQM 406
+PPP PPA PP H G + P + G + S P Q +
Sbjct: 381 LPPPAGPRGA-PPA--PPYHPFATHSGY--FSSLYPPHQFGPFPHHHSYPE---QEIVNL 432
Query: 407 QIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVP-GEMTVEISG 453
IP A+IG GA I + R +GA++ I G E V I+G
Sbjct: 433 FIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG 480
Score = 71 (30.1 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 23/93 (24%), Positives = 41/93 (44%)
Query: 396 PSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISG 453
P ++ +++P S A VIG G +++ ++ + A V + +T E+ V I G
Sbjct: 504 PKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIG 563
Query: 454 TASQVQTAQQLIQNFMAEAAAPSQAQMGASADQ 486
QTAQ+ I+ + + Q A Q
Sbjct: 564 HFFASQTAQRKIREIVQQVKQQEQKYPQGVASQ 596
>UNIPROTKB|Q5RB68 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005856 "cytoskeleton"
evidence=ISS] [GO:0048027 "mRNA 5'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HOVERGEN:HBG052725 CTD:10644
GO:GO:0044430 EMBL:CR858786 RefSeq:NP_001125573.1 UniGene:Pab.13543
ProteinModelPortal:Q5RB68 SMR:Q5RB68 PRIDE:Q5RB68 GeneID:100172487
KEGG:pon:100172487 InParanoid:Q5RB68 Uniprot:Q5RB68
Length = 556
Score = 156 (60.0 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 55/212 (25%), Positives = 98/212 (46%)
Query: 87 HVPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEK-KWPGWPGESVFRMLVPAQKVGSII 145
++P+++V P+ +Q + E A G T + + +P R+LVP Q VG+II
Sbjct: 154 YIPDEEVSSPSPPQRAQRGDHSSREQGHAPGGTSQARQIDFP----LRILVPTQFVGAII 209
Query: 146 GRKGEFIKKIVEETRARIKI-LDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIV 204
G++G IK I ++T++R+ I G E+ V I A E S A +L + ++
Sbjct: 210 GKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSE---ACRMILEIMQK-- 264
Query: 205 DGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLP 264
++D + ++ K+L G LIGK+G +K I+ + + + +DL
Sbjct: 265 ---EADETKLAE----EIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS 317
Query: 265 VFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
++ +R + V G A I LR+
Sbjct: 318 IY--NPERTITVKGTVEACASAEIEIMKKLRE 347
Score = 147 (56.8 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 44/154 (28%), Positives = 75/154 (48%)
Query: 126 WPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP-PGTTERAVMISAKEE 184
+P + + + +P Q VG+IIG+KG IK++ A IKI P +ER V+I+
Sbjct: 381 YPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG--- 437
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
PP + + RI L ++ P K+ + VP+S AG +IGK G TV
Sbjct: 438 -----PP--EAQFKAQGRIFGKLKEENFFNPKEEV-KLEAHIRVPSSTAGRVIGKGGKTV 489
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+Q ++ V ++ + P ++ +V ++G
Sbjct: 490 NELQNLTSAEV-IVPRDQTP--DENEEVIVRIIG 520
Score = 71 (30.1 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 23/93 (24%), Positives = 41/93 (44%)
Query: 396 PSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISG 453
P ++ +++P S A VIG G +++ ++ + A V + +T E+ V I G
Sbjct: 461 PKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIG 520
Query: 454 TASQVQTAQQLIQNFMAEAAAPSQAQMGASADQ 486
QTAQ+ I+ + + Q A Q
Sbjct: 521 HFFASQTAQRKIREIVQQVKQQEQKYPQGVASQ 553
Score = 63 (27.2 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVP-GEMTVEISG 453
IP A+IG GA I + R +GA++ I G E V I+G
Sbjct: 391 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG 437
>UNIPROTKB|Q8UVD9 [details] [associations]
symbol:KHSRP "Far upstream element-binding protein 2"
species:9031 "Gallus gallus" [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0005737 GO:GO:0003730
GO:GO:0008298 GO:GO:0051028 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 EMBL:AF461020 IPI:IPI00589044
RefSeq:NP_989608.1 UniGene:Gga.94 ProteinModelPortal:Q8UVD9
SMR:Q8UVD9 PRIDE:Q8UVD9 GeneID:374140 KEGG:gga:374140 CTD:8570
NextBio:20813655 Uniprot:Q8UVD9
Length = 769
Score = 161 (61.7 bits), Expect = 9.7e-11, Sum P(2) = 9.7e-11
Identities = 46/161 (28%), Positives = 83/161 (51%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP VG IIGR GE I KI +++ +++I G ER+V ++ E +D
Sbjct: 215 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGSPEAVQKAKLMLDD 274
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIV 255
++ + G D ++ +GT ++++PA +AG +IGK G T+K +QE + V
Sbjct: 275 IVSRGRGGPPGQFHDYANGQNGT----VQEIMIPAGKAGLVIGKGGETIKQLQERAG--V 328
Query: 256 RVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
+++ +D D+ + ++GD V +A E++ LR+
Sbjct: 329 KMIFIQDGSQNT-NVDKPLRIIGDPYKVQQACEMVMDILRE 368
Score = 69 (29.3 bits), Expect = 9.7e-11, Sum P(2) = 9.7e-11
Identities = 29/99 (29%), Positives = 38/99 (38%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQET---RGVPGEMTVEISGTASQVQTAQQL 464
IP VIG G ++ I + GA V I G P I G+ Q++ A+Q
Sbjct: 493 IPTHKCGLVIGRGGENVKAINQQRGAFVEISRQLPPNGDPNFKLFIIRGSPQQIEHAKQP 552
Query: 465 IQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSNPG 503
I+ + P G G P M G P NPG
Sbjct: 553 IEEKIEGPLCPVGPGPGPGGPPG--PAGPM-G--PFNPG 586
Score = 62 (26.9 bits), Expect = 9.0e-10, Sum P(3) = 9.0e-10
Identities = 14/62 (22%), Positives = 27/62 (43%)
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
+P VIG +G I I+ +G + ++ G E I G + + A ++I +
Sbjct: 392 VPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPERCEHAARIIND 451
Query: 468 FM 469
+
Sbjct: 452 LL 453
Score = 48 (22.0 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 347 YMPPPRQAESYYPPADLPPPMEKQPHQ 373
Y PP PPA PP++ +P Q
Sbjct: 642 YQQPPGPVPGQ-PPAPTAPPVQGEPPQ 667
Score = 39 (18.8 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 359 PPADLPPPMEKQPHQGISAYGREAPVNVHGSSNA 392
PP PPP + P + Y + P H S A
Sbjct: 592 PPGG-PPPHQYPPQGWGNTYPQWQPPAPHDPSKA 624
Score = 38 (18.4 bits), Expect = 9.0e-10, Sum P(3) = 9.0e-10
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 475 PSQAQMGASADQGYNPYASMYGSPPSNP 502
PS+A A + + Y S Y P P
Sbjct: 621 PSKAAAAADPNAAWAGYYSHYYQQPPGP 648
Score = 37 (18.1 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 493 SMYGSPPSNPGH 504
S+ PP PGH
Sbjct: 455 SLRSGPPGPPGH 466
>UNIPROTKB|Q9Y6M1 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005856 "cytoskeleton"
evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISS]
[GO:0045182 "translation regulator activity" evidence=ISS]
[GO:0042035 "regulation of cytokine biosynthetic process"
evidence=IC] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 HOVERGEN:HBG052725
eggNOG:NOG249985 HOGENOM:HOG000000675 EMBL:AF057352 EMBL:EU408701
EMBL:EU408702 EMBL:EU408703 EMBL:AC016961 EMBL:AC108670
EMBL:BC021290 IPI:IPI00179713 IPI:IPI00180983 IPI:IPI00743914
IPI:IPI00922068 IPI:IPI00953576 RefSeq:NP_001007226.1
RefSeq:NP_006539.3 UniGene:Hs.35354 PDB:2CQH PDBsum:2CQH
ProteinModelPortal:Q9Y6M1 SMR:Q9Y6M1 IntAct:Q9Y6M1 STRING:Q9Y6M1
PhosphoSite:Q9Y6M1 DMDM:224471831 PaxDb:Q9Y6M1 PRIDE:Q9Y6M1
DNASU:10644 Ensembl:ENST00000346192 Ensembl:ENST00000382199
Ensembl:ENST00000421047 GeneID:10644 KEGG:hsa:10644 UCSC:uc003fpo.3
UCSC:uc003fpp.3 UCSC:uc010hyi.3 UCSC:uc010hyj.3 UCSC:uc010hyl.3
CTD:10644 GeneCards:GC03M185361 HGNC:HGNC:28867 HPA:CAB017126
MIM:608289 neXtProt:NX_Q9Y6M1 PharmGKB:PA128394577
OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2 EvolutionaryTrace:Q9Y6M1
GenomeRNAi:10644 NextBio:40455 ArrayExpress:Q9Y6M1 Bgee:Q9Y6M1
CleanEx:HS_IGF2BP2 Genevestigator:Q9Y6M1 GermOnline:ENSG00000073792
GO:GO:0044430 Uniprot:Q9Y6M1
Length = 599
Score = 156 (60.0 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 55/212 (25%), Positives = 98/212 (46%)
Query: 87 HVPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEK-KWPGWPGESVFRMLVPAQKVGSII 145
++P+++V P+ +Q + E A G T + + +P R+LVP Q VG+II
Sbjct: 154 YIPDEEVSSPSPPQRAQRGDHSSREQGHAPGGTSQARQIDFP----LRILVPTQFVGAII 209
Query: 146 GRKGEFIKKIVEETRARIKI-LDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIV 204
G++G IK I ++T++R+ I G E+ V I A E S A +L + ++
Sbjct: 210 GKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSE---ACRMILEIMQK-- 264
Query: 205 DGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLP 264
++D + ++ K+L G LIGK+G +K I+ + + + +DL
Sbjct: 265 ---EADETKLAE----EIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS 317
Query: 265 VFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
++ +R + V G A I LR+
Sbjct: 318 IY--NPERTITVKGTVEACASAEIEIMKKLRE 347
Score = 147 (56.8 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 44/154 (28%), Positives = 75/154 (48%)
Query: 126 WPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP-PGTTERAVMISAKEE 184
+P + + + +P Q VG+IIG+KG IK++ A IKI P +ER V+I+
Sbjct: 424 YPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG--- 480
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
PP + + RI L ++ P K+ + VP+S AG +IGK G TV
Sbjct: 481 -----PP--EAQFKAQGRIFGKLKEENFFNPKEEV-KLEAHIRVPSSTAGRVIGKGGKTV 532
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+Q ++ V ++ + P ++ +V ++G
Sbjct: 533 NELQNLTSAEV-IVPRDQTP--DENEEVIVRIIG 563
Score = 71 (30.1 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 23/93 (24%), Positives = 41/93 (44%)
Query: 396 PSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISG 453
P ++ +++P S A VIG G +++ ++ + A V + +T E+ V I G
Sbjct: 504 PKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIG 563
Query: 454 TASQVQTAQQLIQNFMAEAAAPSQAQMGASADQ 486
QTAQ+ I+ + + Q A Q
Sbjct: 564 HFFASQTAQRKIREIVQQVKQQEQKYPQGVASQ 596
Score = 64 (27.6 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 28/97 (28%), Positives = 37/97 (38%)
Query: 360 PADLPPPMEKQPHQGISAYGREA-PVNVHGS-SNAQSTPSMITQVTQQMQIPLSYADAVI 417
P PP P S Y P + G + S P Q + IP A+I
Sbjct: 387 PRGAPPAAPYHPFTTHSGYFSSLYPHHQFGPFPHHHSYPE---QEIVNLFIPTQAVGAII 443
Query: 418 GTAGASISYIRRSSGATVTIQETRGVP-GEMTVEISG 453
G GA I + R +GA++ I G E V I+G
Sbjct: 444 GKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG 480
Score = 37 (18.1 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 489 NPYASMYGSPPSNPGH 504
+P A G+PP+ P H
Sbjct: 382 SPPAGPRGAPPAAPYH 397
>UNIPROTKB|F8W930 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC016961 EMBL:AC108670
IPI:IPI00953576 HGNC:HGNC:28867 ChiTaRS:IGF2BP2 OMA:KQQEQKH
ProteinModelPortal:F8W930 SMR:F8W930 PRIDE:F8W930
Ensembl:ENST00000457616 UCSC:uc003fpq.3 ArrayExpress:F8W930
Bgee:F8W930 Uniprot:F8W930
Length = 605
Score = 156 (60.0 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 55/212 (25%), Positives = 98/212 (46%)
Query: 87 HVPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEK-KWPGWPGESVFRMLVPAQKVGSII 145
++P+++V P+ +Q + E A G T + + +P R+LVP Q VG+II
Sbjct: 160 YIPDEEVSSPSPPQRAQRGDHSSREQGHAPGGTSQARQIDFP----LRILVPTQFVGAII 215
Query: 146 GRKGEFIKKIVEETRARIKI-LDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIV 204
G++G IK I ++T++R+ I G E+ V I A E S A +L + ++
Sbjct: 216 GKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSE---ACRMILEIMQK-- 270
Query: 205 DGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLP 264
++D + ++ K+L G LIGK+G +K I+ + + + +DL
Sbjct: 271 ---EADETKLAE----EIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLS 323
Query: 265 VFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
++ +R + V G A I LR+
Sbjct: 324 IY--NPERTITVKGTVEACASAEIEIMKKLRE 353
Score = 147 (56.8 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 44/154 (28%), Positives = 75/154 (48%)
Query: 126 WPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP-PGTTERAVMISAKEE 184
+P + + + +P Q VG+IIG+KG IK++ A IKI P +ER V+I+
Sbjct: 430 YPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG--- 486
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
PP + + RI L ++ P K+ + VP+S AG +IGK G TV
Sbjct: 487 -----PP--EAQFKAQGRIFGKLKEENFFNPKEEV-KLEAHIRVPSSTAGRVIGKGGKTV 538
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+Q ++ V ++ + P ++ +V ++G
Sbjct: 539 NELQNLTSAEV-IVPRDQTP--DENEEVIVRIIG 569
Score = 71 (30.1 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 23/93 (24%), Positives = 41/93 (44%)
Query: 396 PSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISG 453
P ++ +++P S A VIG G +++ ++ + A V + +T E+ V I G
Sbjct: 510 PKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIG 569
Query: 454 TASQVQTAQQLIQNFMAEAAAPSQAQMGASADQ 486
QTAQ+ I+ + + Q A Q
Sbjct: 570 HFFASQTAQRKIREIVQQVKQQEQKYPQGVASQ 602
Score = 64 (27.6 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 28/97 (28%), Positives = 37/97 (38%)
Query: 360 PADLPPPMEKQPHQGISAYGREA-PVNVHGS-SNAQSTPSMITQVTQQMQIPLSYADAVI 417
P PP P S Y P + G + S P Q + IP A+I
Sbjct: 393 PRGAPPAAPYHPFTTHSGYFSSLYPHHQFGPFPHHHSYPE---QEIVNLFIPTQAVGAII 449
Query: 418 GTAGASISYIRRSSGATVTIQETRGVP-GEMTVEISG 453
G GA I + R +GA++ I G E V I+G
Sbjct: 450 GKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG 486
Score = 37 (18.1 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 489 NPYASMYGSPPSNPGH 504
+P A G+PP+ P H
Sbjct: 388 SPPAGPRGAPPAAPYH 403
>UNIPROTKB|I3LQS0 [details] [associations]
symbol:HNRNPK "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072369 "regulation of lipid transport by positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA] [GO:0045716 "positive regulation of
low-density lipoprotein particle receptor biosynthetic process"
evidence=IEA] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IEA] [GO:0001077 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IEA] [GO:0000978 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0000978 GO:GO:0001077 GO:GO:0000790
GO:GO:0048260 GO:GO:0071013 GO:GO:0045716 GO:GO:0010988
GeneTree:ENSGT00550000074311 OMA:KALRTDX GO:GO:0072369
InterPro:IPR012987 Pfam:PF08067 EMBL:FP312814
Ensembl:ENSSSCT00000025854 Uniprot:I3LQS0
Length = 444
Score = 124 (48.7 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 37/101 (36%), Positives = 48/101 (47%)
Query: 367 MEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISY 426
M +P QG S Y GS P + TQVT IP A ++IG G I
Sbjct: 340 MAYEP-QGGSGYDYSY-AGGRGSYGDLGGPIITTQVT----IPKDLAGSIIGKGGQRIKQ 393
Query: 427 IRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
IR SGA++ I E + + I+GT Q+Q AQ L+QN
Sbjct: 394 IRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 434
Score = 101 (40.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 44/172 (25%), Positives = 80/172 (46%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILD--GPPGTTERAVMISAKEEP----- 185
R+L+ ++ G++IG+ G+ IK + + A + + D GP ER + ISA E
Sbjct: 49 RILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGP----ERILSISADIETIGEIL 104
Query: 186 ESSLPPAMDGLLRVHKRIVDGL--DSDSSHAPS-----GTGGKVSTKLLVPASQAGSLIG 238
+ +P +GL L +SD+ + G+ +LL+ S AG +IG
Sbjct: 105 KKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIG 164
Query: 239 KQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+G +K ++E + +++ E P DRVV + G V + +++I
Sbjct: 165 VKGAKIKELRENTQTTIKLF-QECCPQ---STDRVVLIGGKPDRVVECIKII 212
Score = 70 (29.7 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 20/80 (25%), Positives = 39/80 (48%)
Query: 201 KRIVDGLDSDSSHAPS-GTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLG 259
KR + ++ + + S T V ++L+ + AG++IGK G +K+++ N V V
Sbjct: 24 KRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPD 83
Query: 260 AEDLPVFALQDDRVVEVVGD 279
+ P L +E +G+
Sbjct: 84 SSG-PERILSISADIETIGE 102
Score = 52 (23.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 257 VLGAEDLPVFALQDDRVVEV-VGDASGVHKAMELIGSHLRKFLVDRSIIPLFEMHMQMPN 315
V+G + AL+ D V V D+SG + + + + + IIP E +Q+P+
Sbjct: 60 VIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPS 119
Query: 316 P 316
P
Sbjct: 120 P 120
>UNIPROTKB|Q9NZI8 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006403 "RNA localization" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0043197 "dendritic
spine" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IMP]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=IDA]
[GO:0005829 "cytosol" evidence=TAS] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0045182 "translation
regulator activity" evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IDA] [GO:0042035 "regulation of cytokine biosynthetic
process" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005886 GO:GO:0005634 GO:GO:0005737
Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182 GO:GO:0030027
GO:GO:0003723 GO:GO:0048027 GO:GO:0003730 GO:GO:0042035
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 EMBL:AF198254 EMBL:DQ227344
EMBL:AC091133 EMBL:AC105030 IPI:IPI00008557 IPI:IPI00930694
RefSeq:NP_001153895.1 RefSeq:NP_006537.3 UniGene:Hs.144936 PDB:3KRM
PDBsum:3KRM ProteinModelPortal:Q9NZI8 SMR:Q9NZI8 DIP:DIP-38139N
IntAct:Q9NZI8 STRING:Q9NZI8 PhosphoSite:Q9NZI8 DMDM:296434536
PaxDb:Q9NZI8 PeptideAtlas:Q9NZI8 PRIDE:Q9NZI8 DNASU:10642
Ensembl:ENST00000290341 Ensembl:ENST00000431824 GeneID:10642
KEGG:hsa:10642 UCSC:uc002iom.3 GeneCards:GC17P047074
H-InvDB:HIX0013955 HGNC:HGNC:28866 HPA:HPA021367 MIM:608288
neXtProt:NX_Q9NZI8 PharmGKB:PA143485501 InParanoid:Q9NZI8
PhylomeDB:Q9NZI8 EvolutionaryTrace:Q9NZI8 GenomeRNAi:10642
NextBio:40447 ArrayExpress:Q9NZI8 Bgee:Q9NZI8 CleanEx:HS_IGF2BP1
CleanEx:HS_ZBP1 Genevestigator:Q9NZI8 GO:GO:0006403 Uniprot:Q9NZI8
Length = 577
Score = 157 (60.3 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 49/153 (32%), Positives = 76/153 (49%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAV-MISAKEEP 185
P + + ++ +PAQ VG+IIG+KG+ IK++ A IKI PP T + V M+ P
Sbjct: 403 PEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKI--APPETPDSKVRMVIITGPP 460
Query: 186 ESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVK 245
E+ + RI L ++ P K+ T + VPAS AG +IGK G TV
Sbjct: 461 EAQF--------KAQGRIYGKLKEENFFGPKEEV-KLETHIRVPASAAGRVIGKGGKTVN 511
Query: 246 SIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+Q + V V+ + P D +V+++G
Sbjct: 512 ELQNLTAAEV-VVPRDQTP--DENDQVIVKIIG 541
Score = 146 (56.5 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 58/232 (25%), Positives = 110/232 (47%)
Query: 67 QLTEDQVPEDHVPEDQVPEDHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGW 126
QL + ++P++Q+ + PE+ S+ Q +Q + V A G+ K+
Sbjct: 143 QLENHALKVSYIPDEQIAQG--PENGRRGGF---GSRGQPRQGSPV--AAGAPAKQQQV- 194
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKI-LDGPPGTTERAVMISAKEEP 185
+ R+LVP Q VG+IIG++G I+ I ++T+++I + G E+A+ + + E
Sbjct: 195 --DIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEG 252
Query: 186 ESSLPPAMDGLLRV-HKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
SS A +L + HK D + T +V K+L + G LIGK+G +
Sbjct: 253 CSS---ACKMILEIMHKEAKD----------TKTADEVPLKILAHNNFVGRLIGKEGRNL 299
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
K +++ + + + +DL ++ +R + V G +A + I +R+
Sbjct: 300 KKVEQDTETKITISSLQDLTLY--NPERTITVKGAIENCCRAEQEIMKKVRE 349
Score = 80 (33.2 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 35/137 (25%), Positives = 59/137 (43%)
Query: 350 PPRQAESYYPPADLPPPMEKQ-PHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQI 408
PP +S + P E Q QG YG+ N G P ++ +++
Sbjct: 443 PPETPDSKVRMVIITGPPEAQFKAQG-RIYGKLKEENFFG-------PKEEVKLETHIRV 494
Query: 409 PLSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISGTASQVQTAQQLIQ 466
P S A VIG G +++ ++ + A V + +T ++ V+I G Q AQ+ I+
Sbjct: 495 PASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIR 554
Query: 467 NFMAEAAAPSQAQMGAS 483
+ +A+ Q Q G S
Sbjct: 555 DILAQVK--QQHQKGQS 569
Score = 56 (24.8 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 25/91 (27%), Positives = 37/91 (40%)
Query: 383 PVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQ--ET 440
P +V G++ S Q Q+ IP A+IG G I + R + A++ I ET
Sbjct: 387 PSSVTGAAPYSSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET 446
Query: 441 RGVPGEMTVEISGTASQVQTAQQLIQNFMAE 471
M + I+G AQ I + E
Sbjct: 447 PDSKVRMVI-ITGPPEAQFKAQGRIYGKLKE 476
>RGD|708580 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0006403 "RNA localization" evidence=IMP] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=ISS]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=ISS]
[GO:0043197 "dendritic spine" evidence=IEA] [GO:0045182
"translation regulator activity" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:708580
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
GO:GO:0030425 Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182
GO:GO:0030027 GO:GO:0048027 GO:GO:0003730 GO:GO:0010494
GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OMA:EQETVHV OrthoDB:EOG405S0T GO:GO:0010610
GO:GO:0006403 EMBL:AF541940 IPI:IPI00192556 RefSeq:NP_783184.1
UniGene:Rn.77572 ProteinModelPortal:Q8CGX0 SMR:Q8CGX0 STRING:Q8CGX0
PhosphoSite:Q8CGX0 Ensembl:ENSRNOT00000008139 GeneID:303477
KEGG:rno:303477 UCSC:RGD:708580 InParanoid:Q8CGX0 NextBio:651402
ArrayExpress:Q8CGX0 Genevestigator:Q8CGX0 Uniprot:Q8CGX0
Length = 577
Score = 157 (60.3 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 49/153 (32%), Positives = 76/153 (49%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAV-MISAKEEP 185
P + + ++ +PAQ VG+IIG+KG+ IK++ A IKI PP T + V M+ P
Sbjct: 403 PEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKI--APPETPDSKVRMVVITGPP 460
Query: 186 ESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVK 245
E+ + RI L ++ P K+ T + VPAS AG +IGK G TV
Sbjct: 461 EAQF--------KAQGRIYGKLKEENFFGPKEEV-KLETHIRVPASAAGRVIGKGGKTVN 511
Query: 246 SIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+Q + V V+ + P D +V+++G
Sbjct: 512 ELQNLTAAEV-VVPRDQTP--DENDQVIVKIIG 541
Score = 146 (56.5 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 58/232 (25%), Positives = 110/232 (47%)
Query: 67 QLTEDQVPEDHVPEDQVPEDHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGW 126
QL + ++P++Q+ + PE+ S+ Q +Q + V A G+ K+
Sbjct: 143 QLENHALKVSYIPDEQIAQG--PENGRRGGF---GSRGQPRQGSPV--AAGAPAKQQQV- 194
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKI-LDGPPGTTERAVMISAKEEP 185
+ R+LVP Q VG+IIG++G I+ I ++T+++I + G E+A+ + + E
Sbjct: 195 --DIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEG 252
Query: 186 ESSLPPAMDGLLRV-HKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
SS A +L + HK D + T +V K+L + G LIGK+G +
Sbjct: 253 CSS---ACKMILEIMHKEAKD----------TKTADEVPLKILAHNNFVGRLIGKEGRNL 299
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
K +++ + + + +DL ++ +R + V G +A + I +R+
Sbjct: 300 KKVEQDTETKITISSLQDLTLY--NPERTITVKGAIENCCRAEQEIMKKVRE 349
Score = 80 (33.2 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 35/137 (25%), Positives = 59/137 (43%)
Query: 350 PPRQAESYYPPADLPPPMEKQ-PHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQI 408
PP +S + P E Q QG YG+ N G P ++ +++
Sbjct: 443 PPETPDSKVRMVVITGPPEAQFKAQG-RIYGKLKEENFFG-------PKEEVKLETHIRV 494
Query: 409 PLSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISGTASQVQTAQQLIQ 466
P S A VIG G +++ ++ + A V + +T ++ V+I G Q AQ+ I+
Sbjct: 495 PASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIR 554
Query: 467 NFMAEAAAPSQAQMGAS 483
+ +A+ Q Q G S
Sbjct: 555 DILAQVK--QQHQKGQS 569
Score = 55 (24.4 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 26/91 (28%), Positives = 37/91 (40%)
Query: 383 PVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQ--ET 440
P +V G++ S Q Q+ IP A+IG G I + R + A++ I ET
Sbjct: 387 PSSVTGAAPYGSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET 446
Query: 441 RGVPGEMTVEISGTASQVQTAQQLIQNFMAE 471
M V I+G AQ I + E
Sbjct: 447 PDSKVRMVV-ITGPPEAQFKAQGRIYGKLKE 476
>UNIPROTKB|O00425 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006412 "translation" evidence=TAS] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0045182 "translation regulator
activity" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0042035
"regulation of cytokine biosynthetic process" evidence=IC]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 EMBL:AC005082
HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF EMBL:U76705 EMBL:U97188
EMBL:BX640800 EMBL:BX648488 EMBL:AC021876 EMBL:AC079780
EMBL:BC065269 IPI:IPI00165467 IPI:IPI00658000 RefSeq:NP_006538.2
UniGene:Hs.700696 PDB:2E44 PDBsum:2E44 ProteinModelPortal:O00425
SMR:O00425 IntAct:O00425 STRING:O00425 PhosphoSite:O00425
PaxDb:O00425 PRIDE:O00425 Ensembl:ENST00000258729 GeneID:10643
KEGG:hsa:10643 UCSC:uc003swf.3 UCSC:uc003swg.3
GeneCards:GC07M023316 HGNC:HGNC:28868 HPA:HPA002037 MIM:608259
neXtProt:NX_O00425 PharmGKB:PA128394576 InParanoid:O00425
PhylomeDB:O00425 ChiTaRS:Igf2bp3 EvolutionaryTrace:O00425
GenomeRNAi:10643 NextBio:40451 ArrayExpress:O00425 Bgee:O00425
CleanEx:HS_IGF2BP3 CleanEx:HS_IMP3 Genevestigator:O00425
Uniprot:O00425
Length = 579
Score = 151 (58.2 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 52/211 (24%), Positives = 104/211 (49%)
Query: 93 VPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGW-----PGESVFRMLVPAQKVGSIIGR 147
+P+++ + + LQ+ + GS+ + PG P + R+LVP Q VG+IIG+
Sbjct: 154 IPDEMAAQQNPLQQPRGRRGLGQRGSSRQGSPGSVSKQKPCDLPLRLLVPTQFVGAIIGK 213
Query: 148 KGEFIKKIVEETRARIKI-LDGPPGTTERAVMISAKEEPESSLPPAMDGLLRV-HKRIVD 205
+G I+ I ++T+++I + G E+++ I + E S+ A +L + HK D
Sbjct: 214 EGATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPEGTSA---ACKSILEIMHKEAQD 270
Query: 206 GLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPV 265
++ ++ K+L + G LIGK+G +K I++ ++ + + ++L +
Sbjct: 271 IKFTE----------EIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTL 320
Query: 266 FALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
+ +R + V G+ KA E I +R+
Sbjct: 321 Y--NPERTITVKGNVETCAKAEEEIMKKIRE 349
Score = 121 (47.7 bits), Expect = 0.00040, P = 0.00040
Identities = 45/151 (29%), Positives = 72/151 (47%)
Query: 129 ESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP-PGTTERAVMISAKEEPES 187
E+V + +PA VG+IIG++G+ IK++ A IKI P R V+I+
Sbjct: 406 ETV-HLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITG------ 458
Query: 188 SLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSI 247
PP + + RI + ++ +P K+ + VP+ AG +IGK G TV +
Sbjct: 459 --PP--EAQFKAQGRIYGKIKEENFVSPKEEV-KLEAHIRVPSFAAGRVIGKGGKTVNEL 513
Query: 248 QEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
Q S+ V V+ + P D VV++ G
Sbjct: 514 QNLSSAEV-VVPRDQTP--DENDQVVVKITG 541
Score = 74 (31.1 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 22/101 (21%), Positives = 47/101 (46%)
Query: 381 EAPVNVHGSSNAQS--TPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI- 437
+A ++G ++ +P ++ +++P A VIG G +++ ++ S A V +
Sbjct: 465 KAQGRIYGKIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVVP 524
Query: 438 -QETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAAPSQ 477
+T ++ V+I+G Q AQ+ IQ + + Q
Sbjct: 525 RDQTPDENDQVVVKITGHFYACQVAQRKIQEILTQVKQHQQ 565
Score = 51 (23.0 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI 437
T + IP A+IG G I + R +GA++ I
Sbjct: 407 TVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI 441
>UNIPROTKB|P61978 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0007165 "signal transduction" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IMP] [GO:0072369
"regulation of lipid transport by positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0048260 "positive regulation of receptor-mediated endocytosis"
evidence=IMP] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IMP] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IMP] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IMP] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0019048 GO:GO:0007165
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000978
GO:GO:0001077 GO:GO:0000790 GO:GO:0003697 EMBL:CH471089
GO:GO:0048260 GO:GO:0000398 GO:GO:0071013 EMBL:AL354733
GO:GO:0045716 GO:GO:0010988 CTD:3190 eggNOG:NOG285495
HOVERGEN:HBG051916 KO:K12886 OMA:KALRTDX OrthoDB:EOG49KFRD
GO:GO:0072369 InterPro:IPR012987 Pfam:PF08067 EMBL:S74678
EMBL:X72727 EMBL:AB209562 EMBL:BC000355 EMBL:BC014980
IPI:IPI00216049 IPI:IPI00216746 IPI:IPI00807545 PIR:S43363
RefSeq:NP_002131.2 RefSeq:NP_112552.1 RefSeq:NP_112553.1
UniGene:Hs.522257 PDB:1J5K PDB:1KHM PDB:1ZZI PDB:1ZZJ PDB:1ZZK
PDBsum:1J5K PDBsum:1KHM PDBsum:1ZZI PDBsum:1ZZJ PDBsum:1ZZK
ProteinModelPortal:P61978 SMR:P61978 DIP:DIP-31805N IntAct:P61978
MINT:MINT-225422 STRING:P61978 PhosphoSite:P61978 DMDM:48429103
SWISS-2DPAGE:P61978 PaxDb:P61978 PRIDE:P61978 DNASU:3190
Ensembl:ENST00000351839 Ensembl:ENST00000360384
Ensembl:ENST00000376263 Ensembl:ENST00000376264
Ensembl:ENST00000376268 Ensembl:ENST00000376281 GeneID:3190
KEGG:hsa:3190 UCSC:uc004ang.4 UCSC:uc004anh.4 GeneCards:GC09M086582
HGNC:HGNC:5044 HPA:CAB004435 HPA:CAB016225 HPA:HPA007644 MIM:600712
neXtProt:NX_P61978 PharmGKB:PA162391350 ChEMBL:CHEMBL3469
ChiTaRS:HNRNPK EvolutionaryTrace:P61978 GenomeRNAi:3190
NextBio:12686 PMAP-CutDB:P61978 ArrayExpress:P61978 Bgee:P61978
CleanEx:HS_HNRNPK Genevestigator:P61978 GermOnline:ENSG00000165119
Uniprot:P61978
Length = 463
Score = 124 (48.7 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 37/101 (36%), Positives = 48/101 (47%)
Query: 367 MEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISY 426
M +P QG S Y GS P + TQVT IP A ++IG G I
Sbjct: 359 MAYEP-QGGSGYDYSY-AGGRGSYGDLGGPIITTQVT----IPKDLAGSIIGKGGQRIKQ 412
Query: 427 IRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
IR SGA++ I E + + I+GT Q+Q AQ L+QN
Sbjct: 413 IRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 453
Score = 100 (40.3 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 44/172 (25%), Positives = 80/172 (46%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILD--GPPGTTERAVMISAKEEP----- 185
R+L+ ++ G++IG+ G+ IK + + A + + D GP ER + ISA E
Sbjct: 46 RILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGP----ERILSISADIETIGEIL 101
Query: 186 ESSLPPAMDGLLRVHKRIVDGL--DSDSSHAPS-----GTGGKVSTKLLVPASQAGSLIG 238
+ +P +GL L +SD+ + G+ +LL+ S AG +IG
Sbjct: 102 KKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIG 161
Query: 239 KQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+G +K ++E + +++ E P DRVV + G V + +++I
Sbjct: 162 VKGAKIKELRENTQTTIKLF-QECCPH---STDRVVLIGGKPDRVVECIKII 209
Score = 78 (32.5 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 25/99 (25%), Positives = 47/99 (47%)
Query: 183 EEPESSLPPA-MDGLLRVHKRIVDGLDSDSSHAPS-GTGGKVSTKLLVPASQAGSLIGKQ 240
E+PE + P +G KR + ++ + + S T V ++L+ + AG++IGK
Sbjct: 4 EQPEETFPNTETNG--EFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKG 61
Query: 241 GGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGD 279
G +K+++ N V V + P L +E +G+
Sbjct: 62 GKNIKALRTDYNASVSVPDSSG-PERILSISADIETIGE 99
Score = 52 (23.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 257 VLGAEDLPVFALQDDRVVEV-VGDASGVHKAMELIGSHLRKFLVDRSIIPLFEMHMQMPN 315
V+G + AL+ D V V D+SG + + + + + IIP E +Q+P+
Sbjct: 57 VIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPS 116
Query: 316 P 316
P
Sbjct: 117 P 117
>MGI|MGI:99894 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10090 "Mus musculus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0000978 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding" evidence=ISO] [GO:0001077
"RNA polymerase II core promoter proximal region sequence-specific
DNA binding transcription factor activity involved in positive
regulation of transcription" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010988
"regulation of low-density lipoprotein particle clearance"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IMP]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
MGI:MGI:99894 GO:GO:0005737 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0006397 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOVERGEN:HBG051916 KO:K12886
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:L31961
EMBL:AK011428 EMBL:AK051313 EMBL:AK078777 EMBL:AK088462
EMBL:BC006694 IPI:IPI00224575 IPI:IPI00890005 IPI:IPI00990152
RefSeq:NP_079555.1 UniGene:Mm.142872 ProteinModelPortal:P61979
SMR:P61979 IntAct:P61979 STRING:P61979 PhosphoSite:P61979
REPRODUCTION-2DPAGE:IPI00223253 REPRODUCTION-2DPAGE:P61979
PaxDb:P61979 PRIDE:P61979 Ensembl:ENSMUST00000043269
Ensembl:ENSMUST00000116403 Ensembl:ENSMUST00000176207 GeneID:15387
KEGG:mmu:15387 UCSC:uc007qtw.1 UCSC:uc007qty.1 NextBio:288062
Bgee:P61979 Genevestigator:P61979 GermOnline:ENSMUSG00000063902
Uniprot:P61979
Length = 463
Score = 124 (48.7 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 37/101 (36%), Positives = 48/101 (47%)
Query: 367 MEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISY 426
M +P QG S Y GS P + TQVT IP A ++IG G I
Sbjct: 359 MAYEP-QGGSGYDYSY-AGGRGSYGDLGGPIITTQVT----IPKDLAGSIIGKGGQRIKQ 412
Query: 427 IRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
IR SGA++ I E + + I+GT Q+Q AQ L+QN
Sbjct: 413 IRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 453
Score = 100 (40.3 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 44/172 (25%), Positives = 80/172 (46%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILD--GPPGTTERAVMISAKEEP----- 185
R+L+ ++ G++IG+ G+ IK + + A + + D GP ER + ISA E
Sbjct: 46 RILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGP----ERILSISADIETIGEIL 101
Query: 186 ESSLPPAMDGLLRVHKRIVDGL--DSDSSHAPS-----GTGGKVSTKLLVPASQAGSLIG 238
+ +P +GL L +SD+ + G+ +LL+ S AG +IG
Sbjct: 102 KKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIG 161
Query: 239 KQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+G +K ++E + +++ E P DRVV + G V + +++I
Sbjct: 162 VKGAKIKELRENTQTTIKLF-QECCPH---STDRVVLIGGKPDRVVECIKII 209
Score = 78 (32.5 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 25/99 (25%), Positives = 47/99 (47%)
Query: 183 EEPESSLPPA-MDGLLRVHKRIVDGLDSDSSHAPS-GTGGKVSTKLLVPASQAGSLIGKQ 240
E+PE + P +G KR + ++ + + S T V ++L+ + AG++IGK
Sbjct: 4 EQPEETFPNTETNG--EFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKG 61
Query: 241 GGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGD 279
G +K+++ N V V + P L +E +G+
Sbjct: 62 GKNIKALRTDYNASVSVPDSSG-PERILSISADIETIGE 99
Score = 52 (23.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 257 VLGAEDLPVFALQDDRVVEV-VGDASGVHKAMELIGSHLRKFLVDRSIIPLFEMHMQMPN 315
V+G + AL+ D V V D+SG + + + + + IIP E +Q+P+
Sbjct: 57 VIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPS 116
Query: 316 P 316
P
Sbjct: 117 P 117
>RGD|71058 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=IEA;ISO] [GO:0000978 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding" evidence=IEA;ISO]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity involved
in positive regulation of transcription" evidence=IEA;ISO]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010988 "regulation of low-density
lipoprotein particle clearance" evidence=IEA;ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0045716
"positive regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 RGD:71058 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0006397 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 HOVERGEN:HBG051916
KO:K12886 InterPro:IPR012987 Pfam:PF08067 EMBL:D17711
IPI:IPI00780608 PIR:S41495 RefSeq:NP_476482.1 UniGene:Rn.11854
ProteinModelPortal:P61980 SMR:P61980 IntAct:P61980 MINT:MINT-1505757
STRING:P61980 PhosphoSite:P61980 World-2DPAGE:0004:P61980
PRIDE:P61980 Ensembl:ENSRNOT00000025916 GeneID:117282
KEGG:rno:117282 UCSC:RGD:71058 InParanoid:P61980 NextBio:620239
ArrayExpress:P61980 Genevestigator:P61980
GermOnline:ENSRNOG00000019113 Uniprot:P61980
Length = 463
Score = 124 (48.7 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 37/101 (36%), Positives = 48/101 (47%)
Query: 367 MEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISY 426
M +P QG S Y GS P + TQVT IP A ++IG G I
Sbjct: 359 MAYEP-QGGSGYDYSY-AGGRGSYGDLGGPIITTQVT----IPKDLAGSIIGKGGQRIKQ 412
Query: 427 IRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
IR SGA++ I E + + I+GT Q+Q AQ L+QN
Sbjct: 413 IRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 453
Score = 100 (40.3 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 44/172 (25%), Positives = 80/172 (46%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILD--GPPGTTERAVMISAKEEP----- 185
R+L+ ++ G++IG+ G+ IK + + A + + D GP ER + ISA E
Sbjct: 46 RILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGP----ERILSISADIETIGEIL 101
Query: 186 ESSLPPAMDGLLRVHKRIVDGL--DSDSSHAPS-----GTGGKVSTKLLVPASQAGSLIG 238
+ +P +GL L +SD+ + G+ +LL+ S AG +IG
Sbjct: 102 KKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIG 161
Query: 239 KQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+G +K ++E + +++ E P DRVV + G V + +++I
Sbjct: 162 VKGAKIKELRENTQTTIKLF-QECCPH---STDRVVLIGGKPDRVVECIKII 209
Score = 78 (32.5 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 25/99 (25%), Positives = 47/99 (47%)
Query: 183 EEPESSLPPA-MDGLLRVHKRIVDGLDSDSSHAPS-GTGGKVSTKLLVPASQAGSLIGKQ 240
E+PE + P +G KR + ++ + + S T V ++L+ + AG++IGK
Sbjct: 4 EQPEETFPNTETNG--EFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKG 61
Query: 241 GGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGD 279
G +K+++ N V V + P L +E +G+
Sbjct: 62 GKNIKALRTDYNASVSVPDSSG-PERILSISADIETIGE 99
Score = 52 (23.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 257 VLGAEDLPVFALQDDRVVEV-VGDASGVHKAMELIGSHLRKFLVDRSIIPLFEMHMQMPN 315
V+G + AL+ D V V D+SG + + + + + IIP E +Q+P+
Sbjct: 57 VIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPS 116
Query: 316 P 316
P
Sbjct: 117 P 117
>WB|WBGene00003978 [details] [associations]
symbol:pes-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:FO081827 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 RefSeq:NP_497351.3 ProteinModelPortal:Q95Y67
SMR:Q95Y67 PaxDb:Q95Y67 EnsemblMetazoa:Y119D3B.17 GeneID:175288
KEGG:cel:CELE_Y119D3B.17 UCSC:Y119D3B.17 CTD:175288
WormBase:Y119D3B.17 HOGENOM:HOG000020666 InParanoid:Q95Y67
OMA:PHSTERA NextBio:887534 Uniprot:Q95Y67
Length = 432
Score = 173 (66.0 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 51/156 (32%), Positives = 83/156 (53%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KG+ IKKI EE+ A+I I DG ER V I+
Sbjct: 75 RLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDG--SCPERIVTITG----------T 122
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGK-VSTKLLVPASQAGSLIGKQGGTVKSIQEAS 251
+ + + + + + D P+ ++ +++VPA+Q GSLIGK G +K I+EA+
Sbjct: 123 LGVIGKAFNMVCNKFEEDMLLLPNSVPKPPITMRVIVPATQCGSLIGKGGSKIKDIREAT 182
Query: 252 NCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAM 287
++V +E LP +R V + G A ++ M
Sbjct: 183 GASIQV-ASEMLPH---STERAVTLSGTADAINLCM 214
Score = 91 (37.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 25/92 (27%), Positives = 45/92 (48%)
Query: 214 APSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRV 273
+PS T ++ +LL+ + GS+IGK+G +K I+E S + + P +R+
Sbjct: 64 SPSTTSLVLTIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDGS-CP------ERI 116
Query: 274 VEVVGDASGVHKAMELIGSHLRKFLVDRSIIP 305
V + G + KA ++ KF D ++P
Sbjct: 117 VTITGTLGVIGKAFNMV---CNKFEEDMLLLP 145
Score = 87 (35.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 23/92 (25%), Positives = 43/92 (46%)
Query: 402 VTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI-QETRGVPGEMTVEISGTASQVQT 460
+T ++ +P + ++IG G+ I IR ++GA++ + E E V +SGTA +
Sbjct: 153 ITMRVIVPATQCGSLIGKGGSKIKDIREATGASIQVASEMLPHSTERAVTLSGTADAINL 212
Query: 461 AQQLIQNFMAEAAAPSQAQMGASADQGYNPYA 492
+ + EA P + + +NP A
Sbjct: 213 CMTQVCQILLEAP-PKGSTITYRPKPTFNPLA 243
Score = 44 (20.5 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 430 SSGATVTIQETRGVPGEM--TVEISGTASQVQTAQQLIQNFMAEAA--APSQAQMGASA 484
+S AT+ Q+ + + + G VQ QQL+ N + + A Q ++ A A
Sbjct: 246 TSAATIAAQQQQAQAQQQLAAAALMGGGQGVQVQQQLVTNALLQQHQFAAVQQELAARA 304
>TAIR|locus:2056951 [details] [associations]
symbol:AT2G03110 "AT2G03110" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
EMBL:BT012113 EMBL:BT012369 IPI:IPI00542292 RefSeq:NP_178410.2
UniGene:At.23438 ProteinModelPortal:Q6NLG5 SMR:Q6NLG5
EnsemblPlants:AT2G03110.1 GeneID:814840 KEGG:ath:AT2G03110
TAIR:At2g03110 InParanoid:Q6NLG5 PhylomeDB:Q6NLG5
Genevestigator:Q6NLG5 Uniprot:Q6NLG5
Length = 153
Score = 154 (59.3 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 41/140 (29%), Positives = 76/140 (54%)
Query: 163 IKILDGPPGTTERAVMISAKEEPESSLP--------PAMDGLLRVHKRIV-DGLDSDSSH 213
+++ + PG ER V I + E + + PA D L +VH +V + D D +
Sbjct: 1 MRVNEALPGCDERVVTIYSNSEERNRIEDDNEDFVCPAFDALFKVHDMVVVEEFDDDDDY 60
Query: 214 APSG--TGGK--VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPV--FA 267
+ + G+ V+ ++LVP+ Q G LIGK G +++++ +N +RV ++LP+ A
Sbjct: 61 NDNDEYSEGQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRVRN-DNLPMCALA 119
Query: 268 LQDDRVVEVVGDASGVHKAM 287
L D +++++GD S V +A+
Sbjct: 120 LSHDELLQIIGDPSAVREAL 139
>CGD|CAL0001510 [details] [associations]
symbol:PBP2 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0010834 "telomere maintenance via
telomere shortening" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 CGD:CAL0001510 GO:GO:0003723
EMBL:AACQ01000046 EMBL:AACQ01000047 eggNOG:NOG315872
RefSeq:XP_718039.1 RefSeq:XP_718106.1 ProteinModelPortal:Q5A8H8
STRING:Q5A8H8 GeneID:3640267 GeneID:3640340 KEGG:cal:CaO19.13193
KEGG:cal:CaO19.5771 HOGENOM:HOG000247928 Uniprot:Q5A8H8
Length = 529
Score = 162 (62.1 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 78/365 (21%), Positives = 142/365 (38%)
Query: 62 QVTEDQLTEDQVPEDHVPEDQVPEDHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEK 121
Q T +T + +++ + + ++ E + P + + ++ N S+ K
Sbjct: 87 QQTAPIITNNSTSHLETESEELDKQNEDANKTQETLEPAYAPSESDHADDQNTGSSSSSK 146
Query: 122 KWPGW-----PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERA 176
P RM P ++ +I+GRKGE I + E+ RI + + G ER
Sbjct: 147 PVSNHRDRDDPTFIQLRMYCPVKEASTIVGRKGETINHLREKANVRITVSENLKGVPERI 206
Query: 177 VMISAKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSL 236
V + P ++ A GL+ R++ L+ S + + KLL+P G +
Sbjct: 207 VAVKG---PAENVARAF-GLIT---RVI--LEEPEDEPASINSQQYNLKLLIPHPMIGFI 257
Query: 237 IGKQGGTVKSIQEASNCIVRVLGAED-LPVFALQDDRVVEVVGDASGVHKAMELIGSHLR 295
IGKQG + I+E N ++ AE+ LP DRV+ V+G +H A+ I +
Sbjct: 258 IGKQGLKFREIEE--NSAAKLKAAENALPY---STDRVLSVMGVGDAIHIAVYYIAQVM- 311
Query: 296 KFLVDRSIIPLFEMHMQMP-NPQ-MDHIXXXXXXXXXXXXXXXXXXXXXHNPQYMPPPRQ 353
L + ++ ++ + P N Q D P + PP+
Sbjct: 312 --LEHKEVLKKHKVVLYNPANYQPTDQSLGGRQRQPPSNSYNNPMGYQAKLPPFSKPPQH 369
Query: 354 AESYYPPADLPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYA 413
+S Y + + P + H +G N + S PS+ + Q Q +
Sbjct: 370 QQSPYNFSMMFQPAVQPQH-----FGSPVTSNPNAVSPVGMQPSV--NIPPQNQFTDEFG 422
Query: 414 DAVIG 418
+ ++G
Sbjct: 423 NTIVG 427
Score = 59 (25.8 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 404 QQMQIPLSYADAVIGTAGASISYIRRSSGAT-VTIQETRGVP-----GE-MT----VEIS 452
Q + + S +VIG G +I +IR +S T V I+ +G G+ MT + ++
Sbjct: 444 QDVFVANSSIGSVIGKRGNNIKHIRETSACTYVKIEPDKGQSMMLGGGKGMTNIRKLTLT 503
Query: 453 GTASQVQTAQQLI 465
GT + +QTA LI
Sbjct: 504 GTLNSIQTAIYLI 516
>UNIPROTKB|I3L9X2 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:10642 GeneTree:ENSGT00530000063171 OMA:EQETVHV
EMBL:FP312864 RefSeq:XP_003358128.1 Ensembl:ENSSSCT00000022825
GeneID:100620940 KEGG:ssc:100620940 Uniprot:I3L9X2
Length = 577
Score = 157 (60.3 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 49/153 (32%), Positives = 76/153 (49%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAV-MISAKEEP 185
P + + ++ +PAQ VG+IIG+KG+ IK++ A IKI PP T + V M+ P
Sbjct: 403 PEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKI--APPETPDSKVRMVIITGPP 460
Query: 186 ESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVK 245
E+ + RI L ++ P K+ T + VPAS AG +IGK G TV
Sbjct: 461 EAQF--------KAQGRIYGKLKEENFFGPKEEV-KLETHIRVPASAAGRVIGKGGKTVN 511
Query: 246 SIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+Q + V V+ + P D +V+++G
Sbjct: 512 ELQNLTAAEV-VVPRDQTP--DENDQVIVKIIG 541
Score = 147 (56.8 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 58/232 (25%), Positives = 110/232 (47%)
Query: 67 QLTEDQVPEDHVPEDQVPEDHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGW 126
QL + ++P++Q+ + PE+ S+ Q +Q + V A G+ K+
Sbjct: 143 QLENHALKVSYIPDEQIAQG--PENGRRGGF---SSRGQPRQGSPV--AAGAPAKQQQV- 194
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKI-LDGPPGTTERAVMISAKEEP 185
+ R+LVP Q VG+IIG++G I+ I ++T+++I + G E+A+ + + E
Sbjct: 195 --DIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEG 252
Query: 186 ESSLPPAMDGLLRV-HKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
SS A +L + HK D + T +V K+L + G LIGK+G +
Sbjct: 253 CSS---ACKMILEIMHKEAKD----------TKTADEVPLKILAHNNFVGRLIGKEGRNL 299
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
K +++ + + + +DL ++ +R + V G +A + I +R+
Sbjct: 300 KKVEQDTETKITISSLQDLTLY--NPERTITVKGAIENCCRAEQEIMKKVRE 349
Score = 76 (31.8 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 31/125 (24%), Positives = 55/125 (44%)
Query: 350 PPRQAESYYPPADLPPPMEKQ-PHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQI 408
PP +S + P E Q QG YG+ N G P ++ +++
Sbjct: 443 PPETPDSKVRMVIITGPPEAQFKAQG-RIYGKLKEENFFG-------PKEEVKLETHIRV 494
Query: 409 PLSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISGTASQVQTAQQLIQ 466
P S A VIG G +++ ++ + A V + +T ++ V+I G Q AQ+ I+
Sbjct: 495 PASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIR 554
Query: 467 NFMAE 471
+ +A+
Sbjct: 555 DILAQ 559
Score = 56 (24.8 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 25/91 (27%), Positives = 37/91 (40%)
Query: 383 PVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQ--ET 440
P +V G++ S Q Q+ IP A+IG G I + R + A++ I ET
Sbjct: 387 PSSVTGAAPYSSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET 446
Query: 441 RGVPGEMTVEISGTASQVQTAQQLIQNFMAE 471
M + I+G AQ I + E
Sbjct: 447 PDSKVRMVI-ITGPPEAQFKAQGRIYGKLKE 476
>UNIPROTKB|J3KQU3 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 Ensembl:ENST00000449198 Uniprot:J3KQU3
Length = 277
Score = 113 (44.8 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 40/113 (35%), Positives = 57/113 (50%)
Query: 181 AKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSG--TGGKVS-TKLLVPASQAGSLI 237
AK EP S L P K+ + + + +PS T + + K++VP S AG +I
Sbjct: 87 AKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLII 146
Query: 238 GKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
GK G TVK++ E S V++ D LQ+ RVV V G+ KA+ELI
Sbjct: 147 GKGGATVKAVMEQSGAWVQLSQKPD--GINLQE-RVVTVSGEPEQNRKAVELI 196
Score = 102 (41.0 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 128 GESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKIL---DGPPGTTERAVMISAKEE 184
G+ ++L+P+ GSIIG+ G+ I ++ +ET A IK+ D PGTTER +I E
Sbjct: 7 GQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVE 66
Score = 94 (38.1 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 40/154 (25%), Positives = 65/154 (42%)
Query: 351 PRQAESYYPPADLPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPL 410
P+ P + L P P + I +P S + T S QV ++ +P
Sbjct: 83 PQNVAKTEPVSILQPQTTVNPDR-IKQTLPSSPTTTKSSPSDPMTTSRANQV--KIIVPN 139
Query: 411 SYADAVIGTAGASISYIRRSSGATVTI-QETRGVP-GEMTVEISGTASQVQTAQQLI-QN 467
S A +IG GA++ + SGA V + Q+ G+ E V +SG Q + A +LI Q
Sbjct: 140 STAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQK 199
Query: 468 FMAEAAAPSQAQMGASADQGYNPYASMYGSPPSN 501
+ + S + + G ++ GSP +N
Sbjct: 200 IQEDPQSGSCLNISYANVTGPVANSNPTGSPYAN 233
Score = 83 (34.3 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 19/77 (24%), Positives = 40/77 (51%)
Query: 220 GKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGD 279
G+ K+L+P+ AGS+IGK G T+ +Q+ + +++ ++D + +RV + G
Sbjct: 7 GQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF--YPGTTERVCLIQGT 64
Query: 280 ASGVHKAMELIGSHLRK 296
++ I +R+
Sbjct: 65 VEALNAVHGFIAEKIRE 81
>UNIPROTKB|F1LU04 [details] [associations]
symbol:F1LU04 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 IPI:IPI00777998
Ensembl:ENSRNOT00000016081 Uniprot:F1LU04
Length = 358
Score = 124 (48.7 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 44/133 (33%), Positives = 73/133 (54%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK EE+ A + I +G ER + ++ P ++ A
Sbjct: 29 RLLMQGKEVGSIIGKKGESVKKR-EESGAHLNISEG--NCPERIITLAG---PTNATFKA 82
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGK-VSTKLLVPASQAGSLIGKQGGTVKSIQEAS 251
++++ + D S S + V+++L+VP SQ GSLIGK +K + E +
Sbjct: 83 F-AMIKLEE------DRSRSMTNSTAASRPVTSRLVVPDSQCGSLIGKGICKIKEVGETT 135
Query: 252 NCIVRVLGAEDLP 264
V+V G + LP
Sbjct: 136 GP-VQVAG-DMLP 146
Score = 94 (38.1 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 32/123 (26%), Positives = 50/123 (40%)
Query: 344 NPQYMPPPRQAESYYPPADLPPPMEKQPHQGISAYGREAPVNVHGSS-NAQSTPSMITQV 402
NP PP +A + +P P + HQ ++ P+ + ++ Q
Sbjct: 224 NPDLERPPLEAYTIQGQYAIPQPDLTKLHQ-LAMQQFHFPMTCGNTGFGIEAGSDASAQT 282
Query: 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQ 462
T P +IG GA I+ I + SGA + I G + V I+G A+ + AQ
Sbjct: 283 TSHELTPNDLIGCIIGRQGAKINEIHQMSGAQIKIANPEGST-DRQVTITGPAASISLAQ 341
Query: 463 QLI 465
LI
Sbjct: 342 YLI 344
Score = 77 (32.2 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 22/84 (26%), Positives = 41/84 (48%)
Query: 207 LDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVF 266
LD D+ G ++ +LL+ + GS+IGK+G +VK +E S + + + P
Sbjct: 11 LDMDTGVTEGGLNVTLTIRLLMQGKEVGSIIGKKGESVKK-REESGAHLNI-SEGNCP-- 66
Query: 267 ALQDDRVVEVVGDASGVHKAMELI 290
+R++ + G + KA +I
Sbjct: 67 ----ERIITLAGPTNATFKAFAMI 86
Score = 64 (27.6 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKIL-DGPPGTTERAVMISA 181
R++VP + GS+IG KG K V ET +++ D P ++E+A+ I++
Sbjct: 109 RLVVPDSQCGSLIG-KGICKIKEVGETTGPVQVAGDMLPNSSEQAIPIAS 157
>UNIPROTKB|O73932 [details] [associations]
symbol:igf2bp3-a "Insulin-like growth factor 2 mRNA-binding
protein 3-A" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS;IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IPI] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0030529 GO:GO:0051028
EMBL:AF055923 EMBL:AF064634 EMBL:BC170196 EMBL:BC170224
EMBL:BC170477 EMBL:BC170479 RefSeq:NP_001081752.1 UniGene:Xl.319
HSSP:Q9Y6M1 ProteinModelPortal:O73932 SMR:O73932 IntAct:O73932
PRIDE:O73932 GeneID:394293 KEGG:xla:394293 CTD:394293
Xenbase:XB-GENE-864935 HOVERGEN:HBG052725 KO:K13197 Uniprot:O73932
Length = 594
Score = 141 (54.7 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 57/222 (25%), Positives = 96/222 (43%)
Query: 83 VPEDHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGW-----PGESV-FRMLV 136
+P D + Q P + + Q Q Q G + PG P V RMLV
Sbjct: 154 IP-DEMATPQAPSQQLQQQPQQQHPQGRRGFGQRGPARQGSPGAAARPKPQTEVPLRMLV 212
Query: 137 PAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPES--SLPPAMD 194
P Q VG+IIG++G I+ I ++T+++I I R A E+P + S P
Sbjct: 213 PTQFVGAIIGKEGATIRNITKQTQSKIDI--------HRKENAGAAEKPITIHSTPEGCS 264
Query: 195 GLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCI 254
++ I+ D+ ++ K+L + G LIGK+G +K I++ ++
Sbjct: 265 AACKIIMEIMQKEAQDTKFTE-----EIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTK 319
Query: 255 VRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
+ + +DL ++ +R + V G KA E I +R+
Sbjct: 320 ITISPLQDLTLY--NPERTITVKGSIEPCAKAEEEIMKKIRE 359
Score = 130 (50.8 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 46/154 (29%), Positives = 73/154 (47%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKIL--DGPPGTTERAVMISAKEE 184
P + +PA VG+IIG++G+ IK++ A IKI +GP R V+I+
Sbjct: 416 PESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKL-RMVIITG--- 471
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
PP + + RI L ++ P K+ T + VP+ AG +IGK G TV
Sbjct: 472 -----PP--EAQFKAQGRIYGKLKEENFFGPKEEV-KLETHIKVPSYAAGRVIGKGGKTV 523
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+Q ++ V V+ + P D+ VV++ G
Sbjct: 524 NELQNLTSAEV-VVPRDQTP--DENDEVVVKITG 554
Score = 118 (46.6 bits), Expect = 0.00089, P = 0.00089
Identities = 34/126 (26%), Positives = 54/126 (42%)
Query: 350 PPRQAESYYPPADLPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIP 409
P A P L ++Q QG +G+ P GS A + P T+V +M +P
Sbjct: 155 PDEMATPQAPSQQLQQQPQQQHPQGRRGFGQRGPAR-QGSPGAAARPKPQTEVPLRMLVP 213
Query: 410 LSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISGTASQVQTAQQLIQN 467
+ A+IG GA+I I + + + + I +E G E + I T A ++I
Sbjct: 214 TQFVGAIIGKEGATIRNITKQTQSKIDIHRKENAGA-AEKPITIHSTPEGCSAACKIIME 272
Query: 468 FMAEAA 473
M + A
Sbjct: 273 IMQKEA 278
Score = 82 (33.9 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 30/117 (25%), Positives = 51/117 (43%)
Query: 365 PPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASI 424
PP + QG YG+ N G P ++ +++P A VIG G ++
Sbjct: 472 PPEAQFKAQG-RIYGKLKEENFFG-------PKEEVKLETHIKVPSYAAGRVIGKGGKTV 523
Query: 425 SYIRRSSGATVTI--QETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAAPSQAQ 479
+ ++ + A V + +T E+ V+I+G Q AQ+ IQ +A+ Q Q
Sbjct: 524 NELQNLTSAEVVVPRDQTPDENDEVVVKITGHFYASQLAQRKIQEILAQVRRQQQQQ 580
Score = 63 (27.2 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 28/101 (27%), Positives = 42/101 (41%)
Query: 376 SAYGREAP-VNVHGSSNAQSTPSMITQV---TQQMQIPLSYADAVIGTAGASISYIRRSS 431
S+ G P V V +++ S P Q T + IP A+IG G I + R +
Sbjct: 389 SSSGMPPPSVGVPSPTSSTSYPPFGQQPESETVHLFIPALAVGAIIGKQGQHIKQLSRFA 448
Query: 432 GATVTIQETRGVPGEMT-VEISGTASQVQTAQQLIQNFMAE 471
GA++ I G ++ V I+G AQ I + E
Sbjct: 449 GASIKIAPAEGPDAKLRMVIITGPPEAQFKAQGRIYGKLKE 489
>UNIPROTKB|F1MPB2 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643 OMA:EAQDTKF
EMBL:DAAA02010222 IPI:IPI00712553 RefSeq:NP_001179217.1
UniGene:Bt.80827 PRIDE:F1MPB2 Ensembl:ENSBTAT00000025854
GeneID:539650 KEGG:bta:539650 NextBio:20878131 Uniprot:F1MPB2
Length = 580
Score = 148 (57.2 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 52/211 (24%), Positives = 103/211 (48%)
Query: 93 VPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGW-----PGESVFRMLVPAQKVGSIIGR 147
+P+++ + S Q+ + GS+ + PG P + R+LVP Q VG+IIG+
Sbjct: 154 IPDEMAAQQSPSQQPRGRRGFGQRGSSRQGSPGSVSKQKPCDLPLRLLVPTQFVGAIIGK 213
Query: 148 KGEFIKKIVEETRARIKI-LDGPPGTTERAVMISAKEEPESSLPPAMDGLLRV-HKRIVD 205
+G I+ I ++T+++I + G E+++ I + E S+ A +L + HK D
Sbjct: 214 EGATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPEGTSA---ACKSILEIMHKEAQD 270
Query: 206 GLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPV 265
++ ++ K+L + G LIGK+G +K I++ ++ + + ++L +
Sbjct: 271 IKFTE----------EIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTL 320
Query: 266 FALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
+ +R + V G+ KA E I +R+
Sbjct: 321 Y--NPERTITVKGNVETCAKAEEEIMKKIRE 349
Score = 121 (47.7 bits), Expect = 0.00040, P = 0.00040
Identities = 45/151 (29%), Positives = 72/151 (47%)
Query: 129 ESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP-PGTTERAVMISAKEEPES 187
E+V + +PA VG+IIG++G+ IK++ A IKI P R V+I+
Sbjct: 407 ETV-HLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITG------ 459
Query: 188 SLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSI 247
PP + + RI + ++ +P K+ + VP+ AG +IGK G TV +
Sbjct: 460 --PP--EAQFKAQGRIYGKIKEENFVSPKEEV-KLEAHIRVPSFAAGRVIGKGGKTVNEL 514
Query: 248 QEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
Q S+ V V+ + P D VV++ G
Sbjct: 515 QNLSSAEV-VVPRDQTP--DENDQVVVKITG 542
Score = 74 (31.1 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 22/101 (21%), Positives = 47/101 (46%)
Query: 381 EAPVNVHGSSNAQS--TPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI- 437
+A ++G ++ +P ++ +++P A VIG G +++ ++ S A V +
Sbjct: 466 KAQGRIYGKIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVVP 525
Query: 438 -QETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAAPSQ 477
+T ++ V+I+G Q AQ+ IQ + + Q
Sbjct: 526 RDQTPDENDQVVVKITGHFYACQVAQRKIQEILTQVKQHQQ 566
Score = 51 (23.0 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI 437
T + IP A+IG G I + R +GA++ I
Sbjct: 408 TVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI 442
>UNIPROTKB|E1BKJ7 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010610 "regulation of mRNA stability involved in response to
stress" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:DAAA02049054 EMBL:DAAA02049055 IPI:IPI00699469
RefSeq:NP_001179383.1 UniGene:Bt.27949 Ensembl:ENSBTAT00000015586
GeneID:516853 KEGG:bta:516853 NextBio:20872317 Uniprot:E1BKJ7
Length = 577
Score = 157 (60.3 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 49/153 (32%), Positives = 76/153 (49%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAV-MISAKEEP 185
P + + ++ +PAQ VG+IIG+KG+ IK++ A IKI PP T + V M+ P
Sbjct: 403 PEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKI--APPETPDSKVRMVIITGPP 460
Query: 186 ESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVK 245
E+ + RI L ++ P K+ T + VPAS AG +IGK G TV
Sbjct: 461 EAQF--------KAQGRIYGKLKEENFFGPKEEV-KLETHIRVPASAAGRVIGKGGKTVN 511
Query: 246 SIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+Q + V V+ + P D +V+++G
Sbjct: 512 ELQNLTAAEV-VVPRDQTP--DENDQVIVKIIG 541
Score = 146 (56.5 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 58/232 (25%), Positives = 110/232 (47%)
Query: 67 QLTEDQVPEDHVPEDQVPEDHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGW 126
QL + ++P++Q+ + PE+ S+ Q +Q + V A G+ K+
Sbjct: 143 QLENHALKVSYIPDEQITQG--PENGRRGGF---GSRGQPRQGSPV--AAGAPAKQQQV- 194
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKI-LDGPPGTTERAVMISAKEEP 185
+ R+LVP Q VG+IIG++G I+ I ++T+++I + G E+A+ + + E
Sbjct: 195 --DIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEG 252
Query: 186 ESSLPPAMDGLLRV-HKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
SS A +L + HK D + T +V K+L + G LIGK+G +
Sbjct: 253 CSS---ACKMILEIMHKEAKD----------TKTADEVPLKILAHNNFVGRLIGKEGRNL 299
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
K +++ + + + +DL ++ +R + V G +A + I +R+
Sbjct: 300 KKVEQDTETKITISSLQDLTLY--NPERTITVKGAIENCCRAEQEIMKKVRE 349
Score = 76 (31.8 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 31/125 (24%), Positives = 55/125 (44%)
Query: 350 PPRQAESYYPPADLPPPMEKQ-PHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQI 408
PP +S + P E Q QG YG+ N G P ++ +++
Sbjct: 443 PPETPDSKVRMVIITGPPEAQFKAQG-RIYGKLKEENFFG-------PKEEVKLETHIRV 494
Query: 409 PLSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISGTASQVQTAQQLIQ 466
P S A VIG G +++ ++ + A V + +T ++ V+I G Q AQ+ I+
Sbjct: 495 PASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIR 554
Query: 467 NFMAE 471
+ +A+
Sbjct: 555 DILAQ 559
Score = 56 (24.8 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 25/91 (27%), Positives = 37/91 (40%)
Query: 383 PVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQ--ET 440
P +V G++ S Q Q+ IP A+IG G I + R + A++ I ET
Sbjct: 387 PSSVTGAAPYSSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET 446
Query: 441 RGVPGEMTVEISGTASQVQTAQQLIQNFMAE 471
M + I+G AQ I + E
Sbjct: 447 PDSKVRMVI-ITGPPEAQFKAQGRIYGKLKE 476
>UNIPROTKB|E2RTC5 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0045182 "translation regulator activity"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0010610 "regulation of mRNA stability involved in
response to stress" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:AAEX03006519 EMBL:AAEX03006520 RefSeq:XP_548184.2
ProteinModelPortal:E2RTC5 Ensembl:ENSCAFT00000026763 GeneID:491064
KEGG:cfa:491064 Uniprot:E2RTC5
Length = 577
Score = 157 (60.3 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 49/153 (32%), Positives = 76/153 (49%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAV-MISAKEEP 185
P + + ++ +PAQ VG+IIG+KG+ IK++ A IKI PP T + V M+ P
Sbjct: 403 PEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKI--APPETPDSKVRMVIITGPP 460
Query: 186 ESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVK 245
E+ + RI L ++ P K+ T + VPAS AG +IGK G TV
Sbjct: 461 EAQF--------KAQGRIYGKLKEENFFGPKEEV-KLETHIRVPASAAGRVIGKGGKTVN 511
Query: 246 SIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+Q + V V+ + P D +V+++G
Sbjct: 512 ELQNLTAAEV-VVPRDQTP--DENDQVIVKIIG 541
Score = 146 (56.5 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 58/232 (25%), Positives = 110/232 (47%)
Query: 67 QLTEDQVPEDHVPEDQVPEDHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGW 126
QL + ++P++Q+ + PE+ S+ Q +Q + V A G+ K+
Sbjct: 143 QLENHALKVSYIPDEQIAQG--PENGRRGGF---GSRGQPRQGSPV--AAGAPAKQQQV- 194
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKI-LDGPPGTTERAVMISAKEEP 185
+ R+LVP Q VG+IIG++G I+ I ++T+++I + G E+A+ + + E
Sbjct: 195 --DIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISVHSTPEG 252
Query: 186 ESSLPPAMDGLLRV-HKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
SS A +L + HK D + T +V K+L + G LIGK+G +
Sbjct: 253 CSS---ACKMILEIMHKEAKD----------TKTADEVPLKILAHNNFVGRLIGKEGRNL 299
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
K +++ + + + +DL ++ +R + V G +A + I +R+
Sbjct: 300 KKVEQDTETKITISSLQDLTLY--NPERTITVKGAIENCCRAEQEIMKKVRE 349
Score = 76 (31.8 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 31/125 (24%), Positives = 55/125 (44%)
Query: 350 PPRQAESYYPPADLPPPMEKQ-PHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQI 408
PP +S + P E Q QG YG+ N G P ++ +++
Sbjct: 443 PPETPDSKVRMVIITGPPEAQFKAQG-RIYGKLKEENFFG-------PKEEVKLETHIRV 494
Query: 409 PLSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISGTASQVQTAQQLIQ 466
P S A VIG G +++ ++ + A V + +T ++ V+I G Q AQ+ I+
Sbjct: 495 PASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIR 554
Query: 467 NFMAE 471
+ +A+
Sbjct: 555 DILAQ 559
Score = 56 (24.8 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 25/91 (27%), Positives = 37/91 (40%)
Query: 383 PVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQ--ET 440
P +V G++ S Q Q+ IP A+IG G I + R + A++ I ET
Sbjct: 387 PSSVTGAAPYSSFMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET 446
Query: 441 RGVPGEMTVEISGTASQVQTAQQLIQNFMAE 471
M + I+G AQ I + E
Sbjct: 447 PDSKVRMVI-ITGPPEAQFKAQGRIYGKLKE 476
>SGD|S000000437 [details] [associations]
symbol:PBP2 "RNA binding protein" species:4932 "Saccharomyces
cerevisiae" [GO:0010834 "telomere maintenance via telomere
shortening" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 SGD:S000000437 GO:GO:0005634 GO:GO:0005737
GO:GO:0003729 EMBL:BK006936 GO:GO:0030529 RefSeq:NP_009792.3
GeneID:852533 KEGG:sce:YBR233W GeneTree:ENSGT00550000074311
KO:K00565 RefSeq:NP_009795.3 GeneID:852538 KEGG:sce:YBR236C
EMBL:Z36101 PIR:S46109 ProteinModelPortal:P38151 SMR:P38151
DIP:DIP-4947N IntAct:P38151 MINT:MINT-570424 STRING:P38151
PaxDb:P38151 EnsemblFungi:YBR233W CYGD:YBR233w eggNOG:NOG315872
HOGENOM:HOG000000730 OMA:GKHINSV OrthoDB:EOG4CRQ87 NextBio:971589
Genevestigator:P38151 GermOnline:YBR233W GO:GO:0010834
Uniprot:P38151
Length = 413
Score = 176 (67.0 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 81/351 (23%), Positives = 138/351 (39%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPE 186
P + RML + I+G KG I +I ET ARI I + G ER V +
Sbjct: 64 PSDVHLRMLCLVKHASLIVGHKGATISRIKSETSARINISNNIRGVPERIVYVRG----- 118
Query: 187 SSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKS 246
D + + + IV L + + +G ++S LL+P G +IGK+G ++
Sbjct: 119 -----TCDDVAKAYGMIVRALLEEHGNEDNGEDIEISINLLIPHHLMGCIIGKRGSRLRE 173
Query: 247 IQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVD---RSI 303
I++ S ++ + + L +DR++ + G +H A I L F ++ +++
Sbjct: 174 IEDLS--AAKLFASPNQ--LLLSNDRILTINGVPDAIHIATFYISQTLLNFQMESPQKNV 229
Query: 304 I-PLFEMHMQMPNPQMDHIXXXXXXXXXXXXXXXXXXXXXHNPQYMPPPRQ-----AESY 357
++ Q + +DH + P P A
Sbjct: 230 KRSIYYQPTQFNSVLIDHSQPNTIFHQRNHQYHPSDKLLSYKPNKNLPISSTLLSMATPQ 289
Query: 358 YPPADLPPPMEKQPHQGI-SAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAV 416
Y A + QP+ I + + PV S A ++ V Q++ I + V
Sbjct: 290 YTTASVANATAFQPNFVIPNVTVLDGPV----ISPAPGNHLLMNFVQQEIFIDEKFVGNV 345
Query: 417 IGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
IG G I+ ++ S+G ++ IQ+ E + I GT Q A LI N
Sbjct: 346 IGKDGKHINSVKESTGCSIIIQDPVEGSSERRLTIRGTFMASQAAIMLISN 396
Score = 38 (18.4 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 61 EQVTEDQLTEDQVPEDHVPE-DQVPE-DHVPEDQVPEDI 97
E +E+QL E ++ + + D + DH D VP D+
Sbjct: 30 EDTSEEQL-EAEIKRVALKDADSHSDNDHDSPDNVPSDV 67
>UNIPROTKB|F8VXH9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022190
ProteinModelPortal:F8VXH9 SMR:F8VXH9 Ensembl:ENST00000550520
ArrayExpress:F8VXH9 Bgee:F8VXH9 Uniprot:F8VXH9
Length = 160
Score = 152 (58.6 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 43/145 (29%), Positives = 81/145 (55%)
Query: 146 GRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVD 205
G+KGE +KK+ EE+ ARI I +G ER + ++ P +++ A ++ ++ +
Sbjct: 22 GKKGESVKKMREESGARINISEG--NCPERIITLAG---PTNAIFKAFAMII---DKLEE 73
Query: 206 GLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPV 265
+ S +++ + + V+ +L+VPASQ GSLIGK G +K I+E++ V+V G + LP
Sbjct: 74 DISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG-DMLPN 132
Query: 266 FALQDDRVVEVVGDASGVHKAMELI 290
+R + + G + + ++ I
Sbjct: 133 ---STERAITIAGIPQSIIECVKQI 154
>TAIR|locus:2184362 [details] [associations]
symbol:BTR1L "AT5G04430" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0003727
"single-stranded RNA binding" evidence=IPI] [GO:0046719 "regulation
of viral protein levels in host cell" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0008380 GO:GO:0003727 KO:K14944
IPI:IPI00533577 RefSeq:NP_850764.1 UniGene:At.4918
ProteinModelPortal:F4JW99 SMR:F4JW99 PRIDE:F4JW99
EnsemblPlants:AT5G04430.2 GeneID:830322 KEGG:ath:AT5G04430
OMA:RNIMEIT PhylomeDB:F4JW99 GO:GO:0046719 Uniprot:F4JW99
Length = 334
Score = 153 (58.9 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 53/163 (32%), Positives = 82/163 (50%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP---PGTTERAVMISAKEEPESSL 189
R LV GS+IG+ G I + ++ ARI++ PGTT+R +MIS S+
Sbjct: 38 RFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISG------SI 91
Query: 190 PPAMDGLLRVHKRIVDGLDSDSSHAPSGTG--GKVSTKLLVPASQAGSLIGKQGGTVKSI 247
++GL + I+D L S+ HA G + +L+VP S G +IGK G T+KS
Sbjct: 92 KEVVNGL----ELILDKLHSEL-HAEDGNEVEPRRRIRLVVPNSSCGGIIGKGGATIKSF 146
Query: 248 QEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
E S +++ D + L D R+V + G +A++LI
Sbjct: 147 IEESKAGIKI-SPLDNTFYGLSD-RLVTLSGTFEEQMRAIDLI 187
Score = 59 (25.8 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 31/123 (25%), Positives = 49/123 (39%)
Query: 350 PPRQAESYYPPADLPPPMEKQPHQGISAYG--REAPVNVHGSSNAQSTPSMITQVTQQMQ 407
P A +Y PP P + Y AP N G T VT +
Sbjct: 204 PYSYAGLFYSGFHGPPYAYALPSVATAGYNSVNYAP-NGSGGKYQNHKEEASTTVT--IG 260
Query: 408 IPLSYADAVIGTAGASISYIRRSSGATVTIQETRG--VPG--EMTVEISGTASQVQTAQQ 463
+ + V+G G +I I + +GA + I + RG + G + V I+G +Q A+
Sbjct: 261 VADEHIGLVLGRGGRNIMEITQMTGARIKISD-RGDFMSGTTDRKVSITGPQRAIQQAET 319
Query: 464 LIQ 466
+I+
Sbjct: 320 MIK 322
>UNIPROTKB|O57526 [details] [associations]
symbol:igf2bp3-b "Insulin-like growth factor 2 mRNA-binding
protein 3-B" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0051028 HSSP:Q9Y6M1
HOVERGEN:HBG052725 KO:K13197 EMBL:AF042353 EMBL:AF064633
EMBL:BC057700 RefSeq:NP_001079932.1 UniGene:Xl.240
ProteinModelPortal:O57526 SMR:O57526 GeneID:379623 KEGG:xla:379623
CTD:379623 Xenbase:XB-GENE-6255198 Uniprot:O57526
Length = 593
Score = 143 (55.4 bits), Expect = 4.8e-10, Sum P(3) = 4.8e-10
Identities = 55/239 (23%), Positives = 107/239 (44%)
Query: 61 EQVTEDQLTEDQVPEDHVPEDQV-PEDHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGST 119
E++ QL + ++P++ P+ + Q P+ P+ + ++ + G+
Sbjct: 137 EKLNGYQLENYSLKVTYIPDEMATPQSPSQQLQQPQQQHPQGRRGFGQRGPARQGSPGAA 196
Query: 120 EKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMI 179
+ P E RMLVP Q VG+IIG++G I+ I ++T+++I I R
Sbjct: 197 ARPKP--QSEVPLRMLVPTQFVGAIIGKEGATIRNITKQTQSKIDI--------HRKENA 246
Query: 180 SAKEEPES--SLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLI 237
A E+P + S P ++ I+ D+ ++ K+L + G LI
Sbjct: 247 GAAEKPITIHSTPEGCSAACKIIMEIMQKEAQDTKFTE-----EIPLKILAHNNFVGRLI 301
Query: 238 GKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
GK+G +K I++ ++ + + +DL ++ +R + V G KA E + +R+
Sbjct: 302 GKEGRNLKKIEQDTDTKITISPLQDLTLY--NPERTITVKGSIETCAKAEEEVMKKIRE 358
Score = 123 (48.4 bits), Expect = 0.00025, P = 0.00025
Identities = 45/154 (29%), Positives = 71/154 (46%)
Query: 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKIL--DGPPGTTERAVMISAKEE 184
P + +PA VG+IIG++G+ IK++ A IKI +GP R V+I+
Sbjct: 415 PESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKL-RMVIITG--- 470
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
PP + + RI L ++ P K+ + VP+ AG +IGK G TV
Sbjct: 471 -----PP--EAQFKAQGRIYGKLKEENFFGPKEEV-KLEAHIKVPSYAAGRVIGKGGKTV 522
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+Q ++ V V+ + P D VV++ G
Sbjct: 523 NELQNLTSAEV-VVPRDQTP--DENDQVVVKITG 553
Score = 121 (47.7 bits), Expect = 0.00042, P = 0.00042
Identities = 34/126 (26%), Positives = 55/126 (43%)
Query: 350 PPRQAESYYPPADLPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIP 409
P A P L P ++ P QG +G+ P GS A + P ++V +M +P
Sbjct: 155 PDEMATPQSPSQQLQQPQQQHP-QGRRGFGQRGPAR-QGSPGAAARPKPQSEVPLRMLVP 212
Query: 410 LSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISGTASQVQTAQQLIQN 467
+ A+IG GA+I I + + + + I +E G E + I T A ++I
Sbjct: 213 TQFVGAIIGKEGATIRNITKQTQSKIDIHRKENAGA-AEKPITIHSTPEGCSAACKIIME 271
Query: 468 FMAEAA 473
M + A
Sbjct: 272 IMQKEA 277
Score = 80 (33.2 bits), Expect = 4.8e-10, Sum P(3) = 4.8e-10
Identities = 31/125 (24%), Positives = 54/125 (43%)
Query: 365 PPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASI 424
PP + QG YG+ N G P ++ +++P A VIG G ++
Sbjct: 471 PPEAQFKAQG-RIYGKLKEENFFG-------PKEEVKLEAHIKVPSYAAGRVIGKGGKTV 522
Query: 425 SYIRRSSGATVTI--QETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAAPSQAQMGA 482
+ ++ + A V + +T ++ V+I+G Q AQ+ IQ +A+ Q Q
Sbjct: 523 NELQNLTSAEVVVPRDQTPDENDQVVVKITGHFYASQLAQRKIQEILAQVRRQQQQQQ-K 581
Query: 483 SADQG 487
+A G
Sbjct: 582 TAQSG 586
Score = 59 (25.8 bits), Expect = 6.2e-08, Sum P(3) = 6.2e-08
Identities = 20/70 (28%), Positives = 30/70 (42%)
Query: 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMT-VEISGTASQVQTA 461
T + IP A+IG G I + R +GA++ I G ++ V I+G A
Sbjct: 419 TVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIITGPPEAQFKA 478
Query: 462 QQLIQNFMAE 471
Q I + E
Sbjct: 479 QGRIYGKLKE 488
Score = 38 (18.4 bits), Expect = 4.8e-10, Sum P(3) = 4.8e-10
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 348 MPPPRQAESYYPPADLPPPMEKQP 371
MPPP S + PP +QP
Sbjct: 392 MPPPSAGVSSPTTSASYPPFGQQP 415
>UNIPROTKB|J9P8W9 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643
OMA:EAQDTKF EMBL:AAEX03009368 EMBL:AAEX03009369 EMBL:AAEX03009370
RefSeq:XP_539474.2 Ensembl:ENSCAFT00000046043 GeneID:482357
KEGG:cfa:482357 Uniprot:J9P8W9
Length = 579
Score = 145 (56.1 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 51/211 (24%), Positives = 103/211 (48%)
Query: 93 VPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGW-----PGESVFRMLVPAQKVGSIIGR 147
+P+++ + + Q+ + GS+ + PG P + R+LVP Q VG+IIG+
Sbjct: 154 IPDEMAAQQNPSQQPRGRRGFGQRGSSRQGSPGSVSKQKPCDLPLRLLVPTQFVGAIIGK 213
Query: 148 KGEFIKKIVEETRARIKI-LDGPPGTTERAVMISAKEEPESSLPPAMDGLLRV-HKRIVD 205
+G I+ I ++T+++I + G E+++ I + E S+ A +L + HK D
Sbjct: 214 EGATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPEGTSA---ACKSILEIMHKEAQD 270
Query: 206 GLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPV 265
++ ++ K+L + G LIGK+G +K I++ ++ + + ++L +
Sbjct: 271 IKFTE----------EIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTL 320
Query: 266 FALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
+ +R + V G+ KA E I +R+
Sbjct: 321 Y--NPERTITVKGNVETCAKAEEEIMKKIRE 349
Score = 121 (47.7 bits), Expect = 0.00040, P = 0.00040
Identities = 45/151 (29%), Positives = 72/151 (47%)
Query: 129 ESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP-PGTTERAVMISAKEEPES 187
E+V + +PA VG+IIG++G+ IK++ A IKI P R V+I+
Sbjct: 406 ETV-HLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITG------ 458
Query: 188 SLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSI 247
PP + + RI + ++ +P K+ + VP+ AG +IGK G TV +
Sbjct: 459 --PP--EAQFKAQGRIYGKIKEENFVSPKEEV-KLEAHIRVPSFAAGRVIGKGGKTVNEL 513
Query: 248 QEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
Q S+ V V+ + P D VV++ G
Sbjct: 514 QNLSSAEV-VVPRDQTP--DENDQVVVKITG 541
Score = 74 (31.1 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 22/101 (21%), Positives = 47/101 (46%)
Query: 381 EAPVNVHGSSNAQS--TPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI- 437
+A ++G ++ +P ++ +++P A VIG G +++ ++ S A V +
Sbjct: 465 KAQGRIYGKIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVVP 524
Query: 438 -QETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAAPSQ 477
+T ++ V+I+G Q AQ+ IQ + + Q
Sbjct: 525 RDQTPDENDQVVVKITGHFYACQVAQRKIQEILTQVKQHQQ 565
Score = 51 (23.0 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI 437
T + IP A+IG G I + R +GA++ I
Sbjct: 407 TVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI 441
>UNIPROTKB|Q5T6W5 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0030529 EMBL:AL354733 HOGENOM:HOG000019764 HOVERGEN:HBG051916
InterPro:IPR012987 Pfam:PF08067 UniGene:Hs.522257 HGNC:HGNC:5044
ChiTaRS:HNRNPK IPI:IPI00514561 SMR:Q5T6W5 MINT:MINT-1445469
Ensembl:ENST00000435158 Uniprot:Q5T6W5
Length = 428
Score = 124 (48.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 37/101 (36%), Positives = 48/101 (47%)
Query: 367 MEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISY 426
M +P QG S Y GS P + TQVT IP A ++IG G I
Sbjct: 324 MAYEP-QGGSGYDYSY-AGGRGSYGDLGGPIITTQVT----IPKDLAGSIIGKGGQRIKQ 377
Query: 427 IRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
IR SGA++ I E + + I+GT Q+Q AQ L+QN
Sbjct: 378 IRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 418
Score = 96 (38.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 21/80 (26%), Positives = 44/80 (55%)
Query: 219 GGKV-STKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVV 277
GG + +T++ +P AGS+IGK G +K I+ S +++ D P+ +DR++ +
Sbjct: 349 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEG-SEDRIITIT 403
Query: 278 GDASGVHKAMELIGSHLRKF 297
G + A L+ + ++++
Sbjct: 404 GTQDQIQNAQYLLQNSVKQY 423
Score = 91 (37.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 88 VPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESV---FRMLVPAQKVGSI 144
VP+ PE I+ + ++ E+ + T +++ + G R+L+ G I
Sbjct: 67 VPDSSGPERILSISADIETI--GEILKKIIPTLEEYQHYKGSDFDCELRLLIHQSLAGGI 124
Query: 145 IGRKGEFIKKIVEETRARIKIL-DGPPGTTERAVMISAKEE 184
IG KG IK++ E T+ IK+ + P +T+R V+I K +
Sbjct: 125 IGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPD 165
Score = 74 (31.1 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 28/117 (23%), Positives = 56/117 (47%)
Query: 176 AVMISAKEEPES--SLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQA 233
+V + PE S+ ++ + + K+I+ L+ + H G+ +LL+ S A
Sbjct: 64 SVSVPDSSGPERILSISADIETIGEILKKIIPTLE-EYQHY-KGSDFDCELRLLIHQSLA 121
Query: 234 GSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
G +IG +G +K ++E + +++ E P DRVV + G V + +++I
Sbjct: 122 GGIIGVKGAKIKELRENTQTTIKLF-QECCPH---STDRVVLIGGKPDRVVECIKII 174
>UNIPROTKB|Q5ZLP8 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T EMBL:AJ719686
IPI:IPI00594271 RefSeq:NP_001006359.1 UniGene:Gga.4039
ProteinModelPortal:Q5ZLP8 SMR:Q5ZLP8 PRIDE:Q5ZLP8
Ensembl:ENSGALT00000017840 GeneID:420617 KEGG:gga:420617 CTD:10643
InParanoid:Q5ZLP8 OMA:EAQDTKF NextBio:20823504 Uniprot:Q5ZLP8
Length = 584
Score = 137 (53.3 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 44/164 (26%), Positives = 81/164 (49%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
RMLVP Q VG+IIG++G I+ I ++T+++I I R A E+P ++
Sbjct: 200 RMLVPTQFVGAIIGKEGATIRNITKQTQSKIDI--------HRKENAGAAEKP-ITIHST 250
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
+G K I++ + ++ ++ K+L + G LIGK+G +K I++ ++
Sbjct: 251 PEGCSTACKIIMEIMQKEAQDTKFTE--EIPLKILAHNNFVGRLIGKEGRNLKKIEQDTD 308
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
+ + +DL ++ +R + V G KA E I +R+
Sbjct: 309 TKITISPLQDLTLY--NPERTITVKGSIETCAKAEEEIMKKIRE 350
Score = 125 (49.1 bits), Expect = 0.00015, P = 0.00015
Identities = 48/172 (27%), Positives = 79/172 (45%)
Query: 112 VNLAVGSTEKKWPGW---PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKIL-- 166
V++A + +P + P + +PA VG+IIG++G+ IK++ A IKI
Sbjct: 389 VSVASAAAAASYPPFGQQPESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPA 448
Query: 167 DGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKL 226
+GP R V+I+ PP + + RI L ++ P K+ +
Sbjct: 449 EGPDAKL-RMVIITG--------PP--EAQFKAQGRIYGKLKEENFFGPKEEV-KLEAHI 496
Query: 227 LVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
VP+ AG +IGK G TV +Q ++ V V+ + P D VV++ G
Sbjct: 497 KVPSYAAGRVIGKGGKTVNELQNLTSAEV-VVPRDQTP--DENDQVVVKITG 545
Score = 81 (33.6 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 30/124 (24%), Positives = 53/124 (42%)
Query: 365 PPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASI 424
PP + QG YG+ N G P ++ +++P A VIG G ++
Sbjct: 463 PPEAQFKAQG-RIYGKLKEENFFG-------PKEEVKLEAHIKVPSYAAGRVIGKGGKTV 514
Query: 425 SYIRRSSGATVTI--QETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAAPSQAQMGA 482
+ ++ + A V + +T ++ V+I+G Q AQ+ IQ +A+ Q Q
Sbjct: 515 NELQNLTSAEVVVPRDQTPDENDQVVVKITGHFYACQLAQRKIQEILAQVRRQQQQQKTL 574
Query: 483 SADQ 486
+ Q
Sbjct: 575 QSGQ 578
Score = 64 (27.6 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 29/101 (28%), Positives = 43/101 (42%)
Query: 376 SAYGREAP-VNVHGSSNAQSTPSMITQV---TQQMQIPLSYADAVIGTAGASISYIRRSS 431
S+ G P V+V ++ A S P Q T + IP A+IG G I + R +
Sbjct: 380 SSSGIPPPAVSVASAAAAASYPPFGQQPESETVHLFIPALAVGAIIGKQGQHIKQLSRFA 439
Query: 432 GATVTIQETRGVPGEMT-VEISGTASQVQTAQQLIQNFMAE 471
GA++ I G ++ V I+G AQ I + E
Sbjct: 440 GASIKIAPAEGPDAKLRMVIITGPPEAQFKAQGRIYGKLKE 480
>ZFIN|ZDB-GENE-060503-536 [details] [associations]
symbol:igf2bp2b "insulin-like growth factor 2 mRNA
binding protein 2b" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-060503-536
GO:GO:0003723 EMBL:CR382370 GeneTree:ENSGT00530000063171
EMBL:BX004885 IPI:IPI00919570 PRIDE:F1QN87
Ensembl:ENSDART00000088166 Bgee:F1QN87 Uniprot:F1QN87
Length = 446
Score = 151 (58.2 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 47/169 (27%), Positives = 87/169 (51%)
Query: 129 ESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKI-LDGPPGTTERAVMISAKEEPES 187
E R+LVP Q VG+IIG++G IK I ++T++++ I G TE+A+ I + +E
Sbjct: 59 ELPLRILVPTQFVGAIIGKEGLTIKNITKQTQSKVDIHRKENAGATEKAITIHSSKE--- 115
Query: 188 SLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSI 247
G + + I++ ++ +++ +V K+L S G LIGK+G +K I
Sbjct: 116 -------GCSQACRMILEIMEKEANDTKIVE--EVPLKILAHNSLVGRLIGKEGRNLKKI 166
Query: 248 QEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
++ + + + +DL V+ +R + V G GV + + G ++K
Sbjct: 167 EQDTGTKITISALQDLTVY--NQERTISVRG---GVEECCKAEGEIMKK 210
Score = 125 (49.1 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 43/152 (28%), Positives = 72/152 (47%)
Query: 129 ESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP--PGTTERAVMISAKEEPE 186
+ V + +P VG++IG+KG+ IK++ A IKI P P ER V+I+
Sbjct: 272 QEVVYLFIPTPAVGALIGKKGQHIKELAHFAGASIKIA-APESPDEPERMVIITG----- 325
Query: 187 SSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKS 246
PP + + RI L ++ K+ + VP++ AG +IGK G TV
Sbjct: 326 ---PP--EAQFKAQGRIYGKLKEENFFTAKEEV-KLEAHIKVPSTAAGRVIGKGGKTVNE 379
Query: 247 IQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+Q ++ V ++ + P DD V+++G
Sbjct: 380 LQNLTSAEV-IVPRDQTP--DENDDVFVKIIG 408
Score = 61 (26.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 17/68 (25%), Positives = 36/68 (52%)
Query: 406 MQIPLSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISGTASQVQTAQQ 463
+++P + A VIG G +++ ++ + A V + +T ++ V+I G QTAQ+
Sbjct: 359 IKVPSTAAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENDDVFVKIIGHFFASQTAQR 418
Query: 464 LIQNFMAE 471
I+ + +
Sbjct: 419 KIREIVQQ 426
Score = 51 (23.0 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 29/107 (27%), Positives = 43/107 (40%)
Query: 374 GISAYGREAPVNVHGSSNAQSTP---SMITQVTQQ----MQIPLSYADAVIGTAGASISY 426
GI + G G + STP S + Q +Q + IP A+IG G I
Sbjct: 238 GIFSSGMSVLPPASGLRGSLSTPANYSPLLQGGEQEVVYLFIPTPAVGALIGKKGQHIKE 297
Query: 427 IRRSSGATVTIQ--ETRGVPGEMTVEISGTASQVQTAQQLIQNFMAE 471
+ +GA++ I E+ P M + I+G AQ I + E
Sbjct: 298 LAHFAGASIKIAAPESPDEPERMVI-ITGPPEAQFKAQGRIYGKLKE 343
>UNIPROTKB|C9JTY5 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00978070 ProteinModelPortal:C9JTY5 SMR:C9JTY5
STRING:C9JTY5 Ensembl:ENST00000466412 ArrayExpress:C9JTY5
Bgee:C9JTY5 Uniprot:C9JTY5
Length = 124
Score = 146 (56.5 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 45/114 (39%), Positives = 60/114 (52%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
RML+ ++VGSIIG+KGE +K+I E++ ARI I +G ER I+
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGSTA-------- 70
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVST-----KLLVPASQAGSLIGKQG 241
+ I LD D AP+ GG VS +L++PASQ GSLIGK G
Sbjct: 71 --AVFHAVSMIAFKLDEDLCAAPAN-GGNVSRPPVTLRLVIPASQCGSLIGKAG 121
>UNIPROTKB|K7GM69 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000034893 Uniprot:K7GM69
Length = 202
Score = 147 (56.8 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 44/154 (28%), Positives = 75/154 (48%)
Query: 126 WPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP-PGTTERAVMISAKEE 184
+P + + + +P Q VG+IIG+KG IK++ A IKI P +ER V+I+
Sbjct: 19 YPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG--- 75
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
PP + + RI L ++ P K+ + VP+S AG +IGK G TV
Sbjct: 76 -----PP--EAQFKAQGRIFGKLKEENFFNPKEEV-KLEAHIRVPSSTAGRVIGKGGKTV 127
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+Q ++ V ++ + P ++ +V ++G
Sbjct: 128 NELQNLTSAEV-IVPRDQTP--DENEEVIVRIIG 158
>UNIPROTKB|E2RJ54 [details] [associations]
symbol:E2RJ54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 OMA:INPWANG EMBL:AAEX03026697
Ensembl:ENSCAFT00000027729 NextBio:20855871 Uniprot:E2RJ54
Length = 439
Score = 109 (43.4 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 34/101 (33%), Positives = 46/101 (45%)
Query: 367 MEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISY 426
M +P QG S Y GS P + TQVT I A ++IG G I
Sbjct: 335 MVYEP-QGGSGYDYSY-AGGRGSYGDLGGPIITTQVT----ISKDLAGSIIGKGGRRIKQ 388
Query: 427 IRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
+R SGA++ I E + + I+GT Q+Q A L+QN
Sbjct: 389 VRHESGASIKIDEPLEGSEDRVITITGTQDQIQNAPYLLQN 429
Score = 103 (41.3 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 42/160 (26%), Positives = 78/160 (48%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILD--GPPGTTERAVMISAKEEPESSLP 190
R+L+ ++ G++IG+ G+ IK + + A + + D GP ER + ISA E
Sbjct: 46 RILLQSKNAGAVIGKGGKNIKALHTDYNASVSVPDSSGP----ERILSISADIET----- 96
Query: 191 PAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEA 250
+ + K+I+ L+ + H G+ +LL+ S AG +IG +G +K ++E
Sbjct: 97 -----IGEILKKIIPTLE-EYQHY-KGSDFDCELRLLIHQSLAGGIIGVKGAKIKELREN 149
Query: 251 SNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+ +++ E P DRVV + G V + +++I
Sbjct: 150 TQTTIKLF-QECCPH---PTDRVVLIGGKPDRVVECIKII 185
Score = 89 (36.4 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 28/101 (27%), Positives = 49/101 (48%)
Query: 88 VPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESV---FRMLVPAQKVGSI 144
VP+ PE I+ + ++ E+ + T +++ + G R+L+ G I
Sbjct: 78 VPDSSGPERILSISADIETI--GEILKKIIPTLEEYQHYKGSDFDCELRLLIHQSLAGGI 135
Query: 145 IGRKGEFIKKIVEETRARIKIL-DGPPGTTERAVMISAKEE 184
IG KG IK++ E T+ IK+ + P T+R V+I K +
Sbjct: 136 IGVKGAKIKELRENTQTTIKLFQECCPHPTDRVVLIGGKPD 176
Score = 86 (35.3 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 20/80 (25%), Positives = 43/80 (53%)
Query: 219 GGKV-STKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVV 277
GG + +T++ + AGS+IGK G +K ++ S +++ D P+ +DRV+ +
Sbjct: 360 GGPIITTQVTISKDLAGSIIGKGGRRIKQVRHESGASIKI----DEPLEG-SEDRVITIT 414
Query: 278 GDASGVHKAMELIGSHLRKF 297
G + A L+ + ++++
Sbjct: 415 GTQDQIQNAPYLLQNSVKQY 434
Score = 69 (29.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 24/99 (24%), Positives = 45/99 (45%)
Query: 183 EEPESSLPPA-MDGLLRVHKRIVDGLDSDSSHAPS-GTGGKVSTKLLVPASQAGSLIGKQ 240
E+PE + P +G K + ++ + + S T V ++L+ + AG++IGK
Sbjct: 4 EQPEETFPNTETNG--EFGKCPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKG 61
Query: 241 GGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGD 279
G +K++ N V V + P L +E +G+
Sbjct: 62 GKNIKALHTDYNASVSVPDSSG-PERILSISADIETIGE 99
>MGI|MGI:1890359 [details] [associations]
symbol:Igf2bp3 "insulin-like growth factor 2 mRNA binding
protein 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890359 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HSSP:Q9Y6M1 HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OrthoDB:EOG405S0T
CTD:10643 OMA:EAQDTKF ChiTaRS:Igf2bp3 EMBL:AK088465 EMBL:AK011689
EMBL:AK147140 EMBL:BC045138 EMBL:BC049082 IPI:IPI00331315
RefSeq:NP_076159.3 UniGene:Mm.281018 ProteinModelPortal:Q9CPN8
SMR:Q9CPN8 STRING:Q9CPN8 PhosphoSite:Q9CPN8 PaxDb:Q9CPN8
PRIDE:Q9CPN8 Ensembl:ENSMUST00000031838 GeneID:140488
KEGG:mmu:140488 UCSC:uc009bwi.2 InParanoid:Q9CPN8 NextBio:369800
Bgee:Q9CPN8 Genevestigator:Q9CPN8 Uniprot:Q9CPN8
Length = 579
Score = 140 (54.3 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 49/187 (26%), Positives = 92/187 (49%)
Query: 117 GSTEKKWPGW-----PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKI-LDGPP 170
GS+ + PG P + R+LVP Q VG+IIG++G I+ I ++T+++I +
Sbjct: 178 GSSRQASPGSVSKQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENT 237
Query: 171 GTTERAVMISAKEEPESSLPPAMDGLLRV-HKRIVDGLDSDSSHAPSGTGGKVSTKLLVP 229
G E+++ I + E S+ A +L + HK D ++ ++ K+L
Sbjct: 238 GAAEKSITILSTPEGTSA---ACKSILEIMHKEAQDIKFTE----------EIPLKILAH 284
Query: 230 ASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMEL 289
+ G LIGK+G +K I++ ++ + + ++L ++ +R + V G KA E
Sbjct: 285 NNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLY--NPERTITVKGSVETCAKAEEE 342
Query: 290 IGSHLRK 296
I +R+
Sbjct: 343 IMKKIRE 349
Score = 121 (47.7 bits), Expect = 0.00040, P = 0.00040
Identities = 45/151 (29%), Positives = 72/151 (47%)
Query: 129 ESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP-PGTTERAVMISAKEEPES 187
E+V + +PA VG+IIG++G+ IK++ A IKI P R V+I+
Sbjct: 406 ETV-HLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITG------ 458
Query: 188 SLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSI 247
PP + + RI + ++ +P K+ + VP+ AG +IGK G TV +
Sbjct: 459 --PP--EAQFKAQGRIYGKIKEENFVSPKEEV-KLEAHIRVPSFAAGRVIGKGGKTVNEL 513
Query: 248 QEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
Q S+ V V+ + P D VV++ G
Sbjct: 514 QSLSSAEV-VVPRDQTP--DENDQVVVKITG 541
Score = 73 (30.8 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 22/101 (21%), Positives = 47/101 (46%)
Query: 381 EAPVNVHGSSNAQS--TPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI- 437
+A ++G ++ +P ++ +++P A VIG G +++ ++ S A V +
Sbjct: 465 KAQGRIYGKIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQSLSSAEVVVP 524
Query: 438 -QETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAAPSQ 477
+T ++ V+I+G Q AQ+ IQ + + Q
Sbjct: 525 RDQTPDENDQVVVKITGHFYACQVAQRKIQEILTQVKQHQQ 565
Score = 51 (23.0 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI 437
T + IP A+IG G I + R +GA++ I
Sbjct: 407 TVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI 441
>UNIPROTKB|D4A8D6 [details] [associations]
symbol:D4A8D6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 OrthoDB:EOG46WZ8K IPI:IPI00559929
Ensembl:ENSRNOT00000045980 Uniprot:D4A8D6
Length = 330
Score = 142 (55.0 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 44/131 (33%), Positives = 67/131 (51%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSI+G+KGE +K+ EE I IL+ ER + + +
Sbjct: 17 RLLMHGKEVGSIMGKKGESARKLCEECGTLINILE--ENCLERIITFAGQR--------- 65
Query: 193 MDGLLRVHKRIVDGLDSD--SSHAPSGTGGKVSTKL--LVPASQAGSLIGKQGGTVKSIQ 248
+ + + I+D L+ D SS A S + S L +VP Q GSLIGK G +K I+
Sbjct: 66 -NAIFKAFAMIIDKLEGDLSSSIANSTAASRPSVNLCLVVPDCQCGSLIGKGGCKIKEIR 124
Query: 249 EASNCIVRVLG 259
E + V+V G
Sbjct: 125 ENTGAQVQVAG 135
Score = 62 (26.9 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 15/63 (23%), Positives = 30/63 (47%)
Query: 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQ 462
+ ++ +P +I GA I+ + ++ GA + I + V I+G+ + + AQ
Sbjct: 254 SHELTVPNDLIGCIIRHQGAEINEVCQACGAQIKIANPMEGSTDWQVTITGSTASISLAQ 313
Query: 463 QLI 465
LI
Sbjct: 314 YLI 316
>UNIPROTKB|E2RA50 [details] [associations]
symbol:E2RA50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000002165 NextBio:20851993 Uniprot:E2RA50
Length = 439
Score = 124 (48.7 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 37/101 (36%), Positives = 48/101 (47%)
Query: 367 MEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISY 426
M +P QG S Y GS P + TQVT IP A ++IG G I
Sbjct: 335 MAYEP-QGGSGYDYSY-AGGRGSYGDLGGPIITTQVT----IPKDLAGSIIGKGGQRIKQ 388
Query: 427 IRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
IR SGA++ I E + + I+GT Q+Q AQ L+QN
Sbjct: 389 IRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 429
Score = 96 (38.9 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 21/80 (26%), Positives = 44/80 (55%)
Query: 219 GGKV-STKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVV 277
GG + +T++ +P AGS+IGK G +K I+ S +++ D P+ +DR++ +
Sbjct: 360 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEG-SEDRIITIT 414
Query: 278 GDASGVHKAMELIGSHLRKF 297
G + A L+ + ++++
Sbjct: 415 GTQDQIQNAQYLLQNSVKQY 434
Score = 86 (35.3 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 28/101 (27%), Positives = 48/101 (47%)
Query: 88 VPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESV---FRMLVPAQKVGSI 144
VP+ PE I+ + ++ E+ + T +++ + G R+L+ G I
Sbjct: 78 VPDSSGPERILSISADIETI--GEILKKIIPTLEEYQHYKGSDFDCELRLLIHQSLAGGI 135
Query: 145 IGRKGEFIKKIVEETRARIKIL-DGPPGTTERAVMISAKEE 184
IG KG IKK T+ IK+ + P +T+R V+I K +
Sbjct: 136 IGVKGAKIKKFGGNTQTTIKLFQECCPHSTDRVVLIGGKPD 176
Score = 86 (35.3 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 37/153 (24%), Positives = 71/153 (46%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILD--GPPGTTERAVMISAKEEPESSLP 190
R+L+ ++ G++IG+ G+ IK + + A + + D GP ER + ISA E
Sbjct: 46 RILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGP----ERILSISADIET----- 96
Query: 191 PAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEA 250
+ + K+I+ L+ + H G+ +LL+ S AG +IG +G +K
Sbjct: 97 -----IGEILKKIIPTLE-EYQHY-KGSDFDCELRLLIHQSLAGGIIGVKGAKIKKFGGN 149
Query: 251 SNCIVRVL------GAEDLPVFALQDDRVVEVV 277
+ +++ + + + + DRVVE +
Sbjct: 150 TQTTIKLFQECCPHSTDRVVLIGGKPDRVVECI 182
Score = 78 (32.5 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 25/99 (25%), Positives = 47/99 (47%)
Query: 183 EEPESSLPPA-MDGLLRVHKRIVDGLDSDSSHAPS-GTGGKVSTKLLVPASQAGSLIGKQ 240
E+PE + P +G KR + ++ + + S T V ++L+ + AG++IGK
Sbjct: 4 EQPEETFPNTETNG--EFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKG 61
Query: 241 GGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGD 279
G +K+++ N V V + P L +E +G+
Sbjct: 62 GKNIKALRTDYNASVSVPDSSG-PERILSISADIETIGE 99
>RGD|1305614 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0044430 "cytoskeletal part"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:1305614
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 EMBL:CH473999
GeneTree:ENSGT00530000063171 CTD:10644 OrthoDB:EOG4FBHSJ
GO:GO:0044430 IPI:IPI00559516 RefSeq:NP_001257527.1
UniGene:Rn.17318 Ensembl:ENSRNOT00000036958 GeneID:303824
KEGG:rno:303824 UCSC:RGD:1305614 NextBio:652153 Uniprot:D3ZWZ6
Length = 592
Score = 143 (55.4 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 44/154 (28%), Positives = 74/154 (48%)
Query: 126 WPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP-PGTTERAVMISAKEE 184
+P + + +P Q VG+IIG+KG IK++ A IKI P +ER V+I+
Sbjct: 417 YPEQETVSLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG--- 473
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
PP + + RI L ++ P K+ + VP+S AG +IGK G TV
Sbjct: 474 -----PP--EAQFKAQGRIFGKLKEENFFNPKEEV-KLEAHIRVPSSTAGRVIGKGGKTV 525
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+Q ++ V ++ + P ++ +V ++G
Sbjct: 526 NELQNLTSAEV-IVPRDQTP--DENEEVIVRIIG 556
Score = 137 (53.3 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 46/160 (28%), Positives = 78/160 (48%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKI-LDGPPGTTERAVMISAKEEPESSLPP 191
R+LVP Q VG+IIG++G IK I ++T++R+ I G E+ V I A E S
Sbjct: 190 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSE--- 246
Query: 192 AMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEAS 251
A +L + ++ ++D + +V K+L G LIGK+G +K I+ +
Sbjct: 247 ACRMILEIMQK-----EADETKLAE----EVPLKILAHNGFVGRLIGKEGRNLKKIEHET 297
Query: 252 NCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKA-MELI 290
+ + +DL ++ +R + V G A ME++
Sbjct: 298 GTKITISSLQDLSIY--NPERTITVKGTIEACASAEMEIM 335
Score = 74 (31.1 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 34/111 (30%), Positives = 43/111 (38%)
Query: 348 MPPPRQAESYYPPADLPPPMEKQPHQGI--SAYGRE--APVNVHGSSNAQSTPSMITQVT 403
+PPP PP+ PP H G S Y P H S Q T S+
Sbjct: 374 LPPPAGPRGA-PPS--PPYHPFATHSGYFSSLYPHHHFGPFPHHHSYPEQETVSLF---- 426
Query: 404 QQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVP-GEMTVEISG 453
IP A+IG GA I + R +GA++ I G E V I+G
Sbjct: 427 ----IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG 473
Score = 71 (30.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 396 PSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISG 453
P ++ +++P S A VIG G +++ ++ + A V + +T E+ V I G
Sbjct: 497 PKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIG 556
Query: 454 TASQVQTAQQLIQNFMAEAAAPSQ 477
QTAQ+ I+ + + +Q
Sbjct: 557 HFFASQTAQRKIREIVQQVKQQAQ 580
Score = 39 (18.8 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 490 PYASMYGSPPSNPGH 504
P A G+PPS P H
Sbjct: 376 PPAGPRGAPPSPPYH 390
>UNIPROTKB|D4ADH2 [details] [associations]
symbol:D4ADH2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 OrthoDB:EOG46WZ8K IPI:IPI00197192
PRIDE:D4ADH2 Ensembl:ENSRNOT00000026359 OMA:IFHICAV Uniprot:D4ADH2
Length = 311
Score = 129 (50.5 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 42/128 (32%), Positives = 66/128 (51%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSII + E +KK+ +E ARI I +G ER + ++ P
Sbjct: 17 RLLMHGKEVGSIIRKSRESVKKL-QEKGARINISEG--NCPERIITLAG---------PT 64
Query: 193 MDGLLRVHKRIVDGLDSD-SSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEAS 251
+ + + I+D + D SS + T +VPASQ GSLIGK G +K I+E++
Sbjct: 65 -NAIFKAFAMIIDKPEEDISSSMTNSTAASRPPVTVVPASQCGSLIGK--GKIKEIREST 121
Query: 252 NCIVRVLG 259
V+ G
Sbjct: 122 GAQVQAAG 129
Score = 73 (30.8 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATV-TIQETRGVPGEMTVEISGTASQVQTA 461
+ ++ +P +IG A I+ IR+ SGA + T G + V I+G A+ + A
Sbjct: 235 SHELTLPNDLIGCIIGRQDAKINEIRQMSGAQIKTANPVEGST-DRQVTITGPAASISLA 293
Query: 462 QQLI 465
Q LI
Sbjct: 294 QYLI 297
>UNIPROTKB|Q9GZT1 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IDA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IDA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=IDA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007050 "cell
cycle arrest" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0008630
GO:GO:0006977 EMBL:CH471055 GO:GO:0007050 GO:GO:0003723
EMBL:AC115284 HOGENOM:HOG000182823 HOVERGEN:HBG053520
UniGene:Hs.20930 HGNC:HGNC:8652 NextBio:62848 EMBL:AF257770
EMBL:AF257772 IPI:IPI00006997 HSSP:Q9UNW9 SMR:Q9GZT1 STRING:Q9GZT1
Ensembl:ENST00000395014 UCSC:uc003dcc.2 Uniprot:Q9GZT1
Length = 424
Score = 113 (44.8 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 51/175 (29%), Positives = 76/175 (43%)
Query: 350 PPRQAE-SYYPPADLPPPMEKQPHQGISA---YGREAPVNVHG----SSNAQ--STPSMI 399
PP+ A Y+P L + +QG S YG P V SS+A +TPS++
Sbjct: 195 PPKGATIPYHPSLSLGTVL-LSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVV 253
Query: 400 ------TQVT-QQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEIS 452
TQ + Q+ +P VIG G+ IS IR+ SGA + I GE V I+
Sbjct: 254 PGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTIT 313
Query: 453 GTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYAS-MYGSPPSNPGHAG 506
G+ + AQ LI + A + S ++ P++ + P + PG G
Sbjct: 314 GSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLG 368
Score = 95 (38.5 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 207 LDSDSSHAPSGTGGKVST-----KLLVPASQAGSLIGKQGGTVKSIQE 249
LD D AP+ GG VS +L++PASQ GSLIGK G +K I+E
Sbjct: 49 LDEDLCAAPAN-GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 95
Score = 66 (28.3 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARI 163
R+++PA + GS+IG+ G IK+I E R I
Sbjct: 71 RLVIPASQCGSLIGKAGTKIKEI-REVRGEI 100
>ZFIN|ZDB-GENE-000308-1 [details] [associations]
symbol:igf2bp3 "insulin-like growth factor 2 mRNA
binding protein 3" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-000308-1
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF
EMBL:AF161270 EMBL:BC045873 IPI:IPI00497892 RefSeq:NP_571566.1
UniGene:Dr.8280 ProteinModelPortal:Q9PW80 SMR:Q9PW80 PRIDE:Q9PW80
Ensembl:ENSDART00000010140 GeneID:30967 KEGG:dre:30967
InParanoid:Q9PW80 NextBio:20807119 ArrayExpress:Q9PW80 Bgee:Q9PW80
Uniprot:Q9PW80
Length = 582
Score = 139 (54.0 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 43/165 (26%), Positives = 84/165 (50%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKI-LDGPPGTTERAVMISAKEEPESSLPP 191
R+LVP Q VG+IIG++G I+ I ++T ++I I G E+ + + + E SS
Sbjct: 198 RLLVPTQFVGAIIGKEGATIRNITKQTHSKIDIHRKENAGAAEKPITVHSTPEGCSS--- 254
Query: 192 AMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEAS 251
A ++ + ++ + +D+ + ++ K+L + G LIGK+G +K I++ +
Sbjct: 255 ACRNIMEIMQK--EAIDTKITE-------EIPLKILAHNNFVGRLIGKEGRNLKKIEQDT 305
Query: 252 NCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
+ + + +DL ++ +R + V G KA E I +R+
Sbjct: 306 DTKITISPLQDLTLY--NPERTITVKGTLDACAKAEEEIMKKVRE 348
Score = 122 (48.0 bits), Expect = 0.00032, P = 0.00032
Identities = 54/174 (31%), Positives = 84/174 (48%)
Query: 129 ESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKIL--DGPPGTTERAVMISAKEEPE 186
E+V + +PA VG+IIG++G+ IK++ A IKI DG +R V+IS
Sbjct: 409 ETV-HLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPADGIDAK-QRMVIISG----- 461
Query: 187 SSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKS 246
PP + + RI L ++ P K+ + VP+ AG +IGK G TV
Sbjct: 462 ---PP--EAQFKAQGRIFGKLKEENFFGPKEEV-KLEAHIKVPSFAAGRVIGKGGKTVNE 515
Query: 247 IQEASNCIVRVLGAEDLPVFALQDDRVVEVVGD--ASGV--HKAMELIGSHLRK 296
+Q ++ V V+ + P D VV++ G AS + K E+I S +R+
Sbjct: 516 LQNLTSAEV-VVPRDQTP--DENDQVVVKITGHFYASQLAQRKIQEII-SQVRR 565
Score = 71 (30.1 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 20/90 (22%), Positives = 43/90 (47%)
Query: 396 PSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISG 453
P ++ +++P A VIG G +++ ++ + A V + +T ++ V+I+G
Sbjct: 485 PKEEVKLEAHIKVPSFAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPDENDQVVVKITG 544
Query: 454 TASQVQTAQQLIQNFMAEAAAPSQAQMGAS 483
Q AQ+ IQ +++ Q + A+
Sbjct: 545 HFYASQLAQRKIQEIISQVRRQQQPKPSAA 574
Score = 65 (27.9 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 393 QSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMT-VEI 451
QS + + T + IP A+IG G I + R +GA++ I G+ + V I
Sbjct: 400 QSFGAQMESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPADGIDAKQRMVII 459
Query: 452 SG 453
SG
Sbjct: 460 SG 461
>UNIPROTKB|F8VWX1 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 IPI:IPI01020747
ProteinModelPortal:F8VWX1 SMR:F8VWX1 Ensembl:ENST00000549571
ArrayExpress:F8VWX1 Bgee:F8VWX1 Uniprot:F8VWX1
Length = 173
Score = 102 (41.0 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 128 GESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKIL---DGPPGTTERAVMISAKEE 184
G+ ++L+P+ GSIIG+ G+ I ++ +ET A IK+ D PGTTER +I E
Sbjct: 11 GQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVE 70
Score = 88 (36.0 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 181 AKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSG--TGGKVS-TKLLVPASQAGSLI 237
AK EP S L P K+ + + + +PS T + + K++VP S AG +I
Sbjct: 91 AKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLII 150
Query: 238 GKQGGTVKSIQEASNCIVRV 257
GK G TVK++ E S V++
Sbjct: 151 GKGGATVKAVMEQSGAWVQL 170
Score = 83 (34.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 19/77 (24%), Positives = 40/77 (51%)
Query: 220 GKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGD 279
G+ K+L+P+ AGS+IGK G T+ +Q+ + +++ ++D + +RV + G
Sbjct: 11 GQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF--YPGTTERVCLIQGT 68
Query: 280 ASGVHKAMELIGSHLRK 296
++ I +R+
Sbjct: 69 VEALNAVHGFIAEKIRE 85
Score = 70 (29.7 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 23/89 (25%), Positives = 37/89 (41%)
Query: 351 PRQAESYYPPADLPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPL 410
P+ P + L P P + I +P S + T S QV ++ +P
Sbjct: 87 PQNVAKTEPVSILQPQTTVNPDR-IKQTLPSSPTTTKSSPSDPMTTSRANQV--KIIVPN 143
Query: 411 SYADAVIGTAGASISYIRRSSGATVTIQE 439
S A +IG GA++ + SGA V + +
Sbjct: 144 STAGLIIGKGGATVKAVMEQSGAWVQLSQ 172
>MGI|MGI:1890358 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890358 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 CTD:10644 OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2
GO:GO:0044430 EMBL:AY531659 EMBL:AK170531 EMBL:CT009567
IPI:IPI00338748 IPI:IPI00761863 RefSeq:NP_898850.2
UniGene:Mm.489442 ProteinModelPortal:Q5SF07 SMR:Q5SF07
STRING:Q5SF07 PhosphoSite:Q5SF07 REPRODUCTION-2DPAGE:Q5SF07
PaxDb:Q5SF07 PRIDE:Q5SF07 Ensembl:ENSMUST00000100052 GeneID:319765
KEGG:mmu:319765 UCSC:uc007yrz.1 UCSC:uc007ysb.1 InParanoid:A6X8Z4
OMA:KQQEQKH NextBio:395368 Bgee:Q5SF07 Genevestigator:Q5SF07
GermOnline:ENSMUSG00000033581 Uniprot:Q5SF07
Length = 592
Score = 143 (55.4 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 44/154 (28%), Positives = 74/154 (48%)
Query: 126 WPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP-PGTTERAVMISAKEE 184
+P + + +P Q VG+IIG+KG IK++ A IKI P +ER V+I+
Sbjct: 417 YPEQETVSLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG--- 473
Query: 185 PESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTV 244
PP + + RI L ++ P K+ + VP+S AG +IGK G TV
Sbjct: 474 -----PP--EAQFKAQGRIFGKLKEENFFNPKEEV-KLEAHIRVPSSTAGRVIGKGGKTV 525
Query: 245 KSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
+Q ++ V ++ + P ++ +V ++G
Sbjct: 526 NELQNLTSAEV-IVPRDQTP--DENEEVIVRIIG 556
Score = 134 (52.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 47/165 (28%), Positives = 78/165 (47%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKI-LDGPPGTTERAVMISAKEEPESSLPP 191
R+LVP Q VG+IIG++G IK I ++T++R+ I G E+ V I A E S
Sbjct: 190 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSE--- 246
Query: 192 AMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEAS 251
A +L + ++ ++D + +V K+L G LIGK+G +K I+ +
Sbjct: 247 ACRMILEIMQK-----EADETKLAE----EVPLKILAHNGFVGRLIGKEGRNLKKIEHET 297
Query: 252 NCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
+ + +DL ++ +R + V G A I LR+
Sbjct: 298 GTKITISSLQDLSIY--NPERTITVRGTIEACANAEIEIMKKLRE 340
Score = 75 (31.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 34/111 (30%), Positives = 43/111 (38%)
Query: 348 MPPPRQAESYYPPADLPPPMEKQPHQGI--SAYGRE--APVNVHGSSNAQSTPSMITQVT 403
+PPP PP+ PP H G S Y P H S Q T S+
Sbjct: 374 LPPPAGPRGV-PPS--PPYHPFATHSGYFSSLYPHHHFGPFPHHHSYPEQETVSLF---- 426
Query: 404 QQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVP-GEMTVEISG 453
IP A+IG GA I + R +GA++ I G E V I+G
Sbjct: 427 ----IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG 473
Score = 70 (29.7 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 396 PSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI--QETRGVPGEMTVEISG 453
P ++ +++P S A VIG G +++ ++ + A V + +T E+ V I G
Sbjct: 497 PKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIG 556
Query: 454 TASQVQTAQQLIQNFMAEAAAPSQ 477
QTAQ+ I+ + + Q
Sbjct: 557 HFFASQTAQRKIREIVQQVKQQEQ 580
>WB|WBGene00013347 [details] [associations]
symbol:Y59A8B.10 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 eggNOG:NOG258094
KO:K14944 EMBL:AL132898 GeneID:180183 KEGG:cel:CELE_Y59A8B.10
CTD:180183 HSSP:P51513 RefSeq:NP_001256769.1
ProteinModelPortal:Q9GRY9 SMR:Q9GRY9 DIP:DIP-24651N IntAct:Q9GRY9
MINT:MINT-1109012 STRING:Q9GRY9 PaxDb:Q9GRY9 PRIDE:Q9GRY9
EnsemblMetazoa:Y59A8B.10a UCSC:Y59A8B.10 WormBase:Y59A8B.10a
HOGENOM:HOG000017831 InParanoid:Q9GRY9 OMA:LAKYNIM NextBio:908344
ArrayExpress:Q9GRY9 Uniprot:Q9GRY9
Length = 413
Score = 160 (61.4 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 51/197 (25%), Positives = 99/197 (50%)
Query: 100 EDSQLQEKQENEVNLAVGSTEKK--WPGWP--GESV-FRMLVPAQKVGSIIGRKGEFIKK 154
EDS+ Q+ + + + G KK + G G+ + ++L+P+ VG+IIG+ GE ++
Sbjct: 7 EDSKTQQGVKRTQDASDGPANKKAHFGGEEEGGDHLSIKILIPSNAVGAIIGKGGEAMRN 66
Query: 155 IVEETRARIKILDGP---PGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDGLDSDS 211
+ + R+++ PGT+ER ++ + ++ ++ +R ++ D SD+
Sbjct: 67 LKNDNNCRVQMSKNSETYPGTSERICLVKGRLNNIMAVIESIQDKIR--EKCADQGGSDA 124
Query: 212 -SHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQD 270
H + G ++ K+++P + AG +IGK G +K I+E C ++V
Sbjct: 125 FDHKNTSRGAEI--KIVMPNTSAGMVIGKSGANIKDIREQFGCQIQVYPKAGSVEAKTSL 182
Query: 271 DRVVEVVGD-ASGVHKA 286
+RVV V D AS + +A
Sbjct: 183 ERVVTVAHDEASALLQA 199
>UNIPROTKB|Q9GRY9 [details] [associations]
symbol:Y59A8B.10 "Protein Y59A8B.10, isoform a"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00650000093048 eggNOG:NOG258094 KO:K14944
EMBL:AL132898 GeneID:180183 KEGG:cel:CELE_Y59A8B.10 CTD:180183
HSSP:P51513 RefSeq:NP_001256769.1 ProteinModelPortal:Q9GRY9
SMR:Q9GRY9 DIP:DIP-24651N IntAct:Q9GRY9 MINT:MINT-1109012
STRING:Q9GRY9 PaxDb:Q9GRY9 PRIDE:Q9GRY9 EnsemblMetazoa:Y59A8B.10a
UCSC:Y59A8B.10 WormBase:Y59A8B.10a HOGENOM:HOG000017831
InParanoid:Q9GRY9 OMA:LAKYNIM NextBio:908344 ArrayExpress:Q9GRY9
Uniprot:Q9GRY9
Length = 413
Score = 160 (61.4 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 51/197 (25%), Positives = 99/197 (50%)
Query: 100 EDSQLQEKQENEVNLAVGSTEKK--WPGWP--GESV-FRMLVPAQKVGSIIGRKGEFIKK 154
EDS+ Q+ + + + G KK + G G+ + ++L+P+ VG+IIG+ GE ++
Sbjct: 7 EDSKTQQGVKRTQDASDGPANKKAHFGGEEEGGDHLSIKILIPSNAVGAIIGKGGEAMRN 66
Query: 155 IVEETRARIKILDGP---PGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDGLDSDS 211
+ + R+++ PGT+ER ++ + ++ ++ +R ++ D SD+
Sbjct: 67 LKNDNNCRVQMSKNSETYPGTSERICLVKGRLNNIMAVIESIQDKIR--EKCADQGGSDA 124
Query: 212 -SHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQD 270
H + G ++ K+++P + AG +IGK G +K I+E C ++V
Sbjct: 125 FDHKNTSRGAEI--KIVMPNTSAGMVIGKSGANIKDIREQFGCQIQVYPKAGSVEAKTSL 182
Query: 271 DRVVEVVGD-ASGVHKA 286
+RVV V D AS + +A
Sbjct: 183 ERVVTVAHDEASALLQA 199
>ZFIN|ZDB-GENE-060929-1258 [details] [associations]
symbol:igf2bp1 "insulin-like growth factor 2 mRNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322
SMART:SM00360 ZFIN:ZDB-GENE-060929-1258 GO:GO:0005634 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0070937
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T EMBL:BC124196 IPI:IPI00800578
RefSeq:NP_001070027.1 UniGene:Dr.81351 ProteinModelPortal:Q08CK7
SMR:Q08CK7 PRIDE:Q08CK7 GeneID:558182 KEGG:dre:558182
InParanoid:Q08CK7 NextBio:20882359 Uniprot:Q08CK7
Length = 598
Score = 135 (52.6 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 41/164 (25%), Positives = 82/164 (50%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+LVP Q VG+IIG++G I+ I ++T+++I + R A E+P S+
Sbjct: 202 RLLVPTQYVGAIIGKEGATIRNITKQTQSKIDV--------HRKENAGAAEKP-ISIHST 252
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASN 252
+G + I++ ++ ++ T +V K+L + G LIGK+G +K +++ ++
Sbjct: 253 PEGCSAACRMILEIMNQEAKDTK--TADEVPLKVLAHNNFVGRLIGKEGRNLKKVEQDTD 310
Query: 253 CIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296
+ + +DL ++ +R + V G A + I +R+
Sbjct: 311 TKITISPLQDLTLY--NPERTITVKGSIEACCLAEQEIMKKVRE 352
Score = 132 (51.5 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 46/151 (30%), Positives = 74/151 (49%)
Query: 129 ESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP-PGTTERAVMISAKEEPES 187
E+V + +PAQ VG++IG+KG+ IK++ A IKI P + R V+++
Sbjct: 408 ETV-HVYIPAQAVGALIGKKGQHIKQLSRFAGASIKIAPAEAPDSKMRMVIVTG------ 460
Query: 188 SLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSI 247
PP + + RI L ++ P K+ T + V A+ AG +IGK G TV +
Sbjct: 461 --PP--EAQFKAQGRIYGKLKEENFFGPKEEV-KLETHIKVAAAAAGRVIGKGGKTVNEL 515
Query: 248 QEASNCIVRVLGAEDLPVFALQDDRVVEVVG 278
Q + V V+ E P D +V+++G
Sbjct: 516 QNLTAAEV-VVPREQTP--DEHDQVIVKIIG 543
Score = 73 (30.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 32/137 (23%), Positives = 59/137 (43%)
Query: 365 PPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASI 424
PP + QG YG+ N G P ++ +++ + A VIG G ++
Sbjct: 461 PPEAQFKAQG-RIYGKLKEENFFG-------PKEEVKLETHIKVAAAAAGRVIGKGGKTV 512
Query: 425 SYIRRSSGATVTI--QETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAAPSQAQMGA 482
+ ++ + A V + ++T ++ V+I G Q AQ+ I++ + + Q G
Sbjct: 513 NELQNLTAAEVVVPREQTPDEHDQVIVKIIGHFYASQLAQRKIRDILTQVKQ-QQKGGGM 571
Query: 483 SADQGYNPYA-SMYGSP 498
QG +P + GSP
Sbjct: 572 GTPQGPHPQGMTELGSP 588
Score = 64 (27.6 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 30/116 (25%), Positives = 44/116 (37%)
Query: 358 YPPAD-LPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAV 416
+PP+ +PPP A G P +G A Q T + IP A+
Sbjct: 379 FPPSSAMPPP----------ALGNSVPGPPYGPMGASE------QETVHVYIPAQAVGAL 422
Query: 417 IGTAGASISYIRRSSGATVTIQETRGVPGEMT-VEISGTASQVQTAQQLIQNFMAE 471
IG G I + R +GA++ I +M V ++G AQ I + E
Sbjct: 423 IGKKGQHIKQLSRFAGASIKIAPAEAPDSKMRMVIVTGPPEAQFKAQGRIYGKLKE 478
>UNIPROTKB|C9JSZ1 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
EMBL:AC096948 HGNC:HGNC:4004 ChiTaRS:FUBP1 IPI:IPI00641948
ProteinModelPortal:C9JSZ1 SMR:C9JSZ1 STRING:C9JSZ1 PRIDE:C9JSZ1
Ensembl:ENST00000421641 HOGENOM:HOG000110867 ArrayExpress:C9JSZ1
Bgee:C9JSZ1 Uniprot:C9JSZ1
Length = 232
Score = 150 (57.9 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 41/113 (36%), Positives = 60/113 (53%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDG 195
VP VG IIGR GE I +I +E+ +I+I G ER+ M++ E S +D
Sbjct: 127 VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 186
Query: 196 LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQ 248
+ V K G + H G G V ++++PAS+AG +IGK G T+K +Q
Sbjct: 187 I--VEK----GRPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQ 232
>WB|WBGene00022738 [details] [associations]
symbol:ZK418.9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 eggNOG:NOG300923 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 EMBL:FO080150
HOGENOM:HOG000018892 PIR:T27855 RefSeq:NP_001023000.1
ProteinModelPortal:Q23487 SMR:Q23487 STRING:Q23487 PaxDb:Q23487
PRIDE:Q23487 EnsemblMetazoa:ZK418.9a GeneID:175989
KEGG:cel:CELE_ZK418.9 UCSC:ZK418.9b.2 CTD:175989 WormBase:ZK418.9a
InParanoid:Q23487 OMA:NCTIEGP NextBio:890626 ArrayExpress:Q23487
Uniprot:Q23487
Length = 557
Score = 141 (54.7 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 44/177 (24%), Positives = 84/177 (47%)
Query: 134 MLVPAQKVGSIIGRKGEFIKKIVEETRARIKIL-DGPPGTTER-AVMISAKEEPESSLPP 191
++VP G IIG+ GE IK++ ET +I+ D P + +R AV++ +++ +
Sbjct: 244 VIVPRLSAGMIIGKGGEMIKRLAAETGTKIQFKPDTNPNSEDRIAVIMGTRDQ----IYR 299
Query: 192 AMDGLLRVHKRIV--DGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQE 249
A + + + R + +G D A + G+ + VPA + G +IGK G +K I+
Sbjct: 300 ATERITEIVNRAIKNNGAPQDRGSAGTVLPGQSIFYMHVPAGKCGLVIGKGGENIKQIER 359
Query: 250 ASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVDRSIIPL 306
+ + A + +D++V E+ G +H A L+ + + + + PL
Sbjct: 360 ETGATCGLAPAAEQKN---EDEKVFEIKGSQLQIHHASHLVRIKVGEISPNTPVPPL 413
Score = 115 (45.5 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 45/185 (24%), Positives = 83/185 (44%)
Query: 107 KQENEV-NLAVGSTEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKI 165
K+ +EV +L +G ++K +P VP + VG +IG+ G I+ I + + R++
Sbjct: 38 KKSSEVGDLNMGDSDKITDIYP--------VPEKVVGLVIGKGGSEIRLIQQTSGCRVQ- 88
Query: 166 LDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTK 225
+D P + E P + A + +V R G P G+V+ +
Sbjct: 89 MD-PDHQSVNGFRNCTIEGPPDQVAVARQMITQVINRNQTGAQ------PGAAPGEVTEE 141
Query: 226 LLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHK 285
+L+PA + G +IGK G T++ +QE S +R A + + ++G + +
Sbjct: 142 MLIPADKIGLVIGKGGETIRIVQEQSG--LRNCNVVQETTTATGQPKPLRMIGSPAAIET 199
Query: 286 AMELI 290
A L+
Sbjct: 200 AKALV 204
Score = 111 (44.1 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 44/184 (23%), Positives = 82/184 (44%)
Query: 124 PGW-PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAK 182
PG PGE ML+PA K+G +IG+ GE I+ + E++ R + + +
Sbjct: 131 PGAAPGEVTEEMLIPADKIGLVIGKGGETIRIVQEQSGLR------NCNVVQETTTATGQ 184
Query: 183 EEPESSL--PPAMDGLLRVHKRIVDGLDSDSS------HAPSGT-GG-------KVSTKL 226
+P + P A++ + I++ ++ H PSG GG + ++
Sbjct: 185 PKPLRMIGSPAAIETAKALVHNIMNNTQGNAPLLQRAPHQPSGQFGGGYGAQEAQAKGEV 244
Query: 227 LVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKA 286
+VP AG +IGK G +K + + ++ + P +DR+ ++G +++A
Sbjct: 245 IVPRLSAGMIIGKGGEMIKRLAAETGTKIQ-FKPDTNPN---SEDRIAVIMGTRDQIYRA 300
Query: 287 MELI 290
E I
Sbjct: 301 TERI 304
Score = 90 (36.7 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 26/101 (25%), Positives = 41/101 (40%)
Query: 406 MQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGE--MTVEISGTASQVQTAQQ 463
M +P VIG G +I I R +GAT + E EI G+ Q+ A
Sbjct: 336 MHVPAGKCGLVIGKGGENIKQIERETGATCGLAPAAEQKNEDEKVFEIKGSQLQIHHASH 395
Query: 464 LIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSNPGH 504
L++ + E + + A GY +M+ + N G+
Sbjct: 396 LVRIKVGEISPNTPVPPLQGAGGGYQQQQAMFSAGTQNGGY 436
Score = 85 (35.0 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 29/104 (27%), Positives = 51/104 (49%)
Query: 190 PPAMDGLLRVHKRIVDGLDSDSSHA-PSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQ 248
PP D + + I ++ + + A P G+V+ ++L+PA + G +IGK G T++ +Q
Sbjct: 107 PP--DQVAVARQMITQVINRNQTGAQPGAAPGEVTEEMLIPADKIGLVIGKGGETIRIVQ 164
Query: 249 EASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGS 292
E S L++ VV+ A+G K + +IGS
Sbjct: 165 EQSG---------------LRNCNVVQETTTATGQPKPLRMIGS 193
Score = 63 (27.2 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 28/124 (22%), Positives = 49/124 (39%)
Query: 365 PPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASI 424
P +++ PHQ +G +G+ AQ+ +I +P A +IG G I
Sbjct: 216 PLLQRAPHQPSGQFG-----GGYGAQEAQAKGEVI--------VPRLSAGMIIGKGGEMI 262
Query: 425 SYIRRSSGATVTIQ-ETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAAPSQAQMGAS 483
+ +G + + +T + I GT Q+ A + I + A + GA
Sbjct: 263 KRLAAETGTKIQFKPDTNPNSEDRIAVIMGTRDQIYRATERITEIVNRAIKNN----GAP 318
Query: 484 ADQG 487
D+G
Sbjct: 319 QDRG 322
>UNIPROTKB|B3KM64 [details] [associations]
symbol:PCBP4 "cDNA FLJ10382 fis, clone NT2RM2002088, highly
similar to Poly(rC)-binding protein 4" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HOVERGEN:HBG053520 UniGene:Hs.20930 HGNC:HGNC:8652 EMBL:AK001244
IPI:IPI00788617 SMR:B3KM64 STRING:B3KM64 Ensembl:ENST00000395013
UCSC:uc003dci.2 Uniprot:B3KM64
Length = 243
Score = 98 (39.6 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 35/121 (28%), Positives = 55/121 (45%)
Query: 394 STPSMI------TQVT-QQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGE 446
+TPS++ TQ + Q+ +P VIG G+ IS IR+ SGA + I GE
Sbjct: 67 ATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE 126
Query: 447 MTVEISGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYAS-MYGSPPSNPGHA 505
V I+G+ + AQ LI + A + S ++ P++ + P + PG
Sbjct: 127 RHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLL 186
Query: 506 G 506
G
Sbjct: 187 G 187
Score = 97 (39.2 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 207 LDSDSSHAPSGTGGKVST-----KLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAE 261
LD D AP+ GG VS +L++PASQ GSLIGK G +K I+E + ++ L +
Sbjct: 6 LDEDLCAAPAN-GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIREVTK--LQQLSSH 62
Query: 262 DLPVFA 267
+P FA
Sbjct: 63 AVP-FA 67
Score = 68 (29.0 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETR 160
R+++PA + GS+IG+ G IK+I E T+
Sbjct: 28 RLVIPASQCGSLIGKAGTKIKEIREVTK 55
>UNIPROTKB|I3L2B5 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 ProteinModelPortal:I3L2B5 SMR:I3L2B5
Ensembl:ENST00000574031 Bgee:I3L2B5 Uniprot:I3L2B5
Length = 152
Score = 134 (52.2 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 36/95 (37%), Positives = 53/95 (55%)
Query: 93 VPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFI 152
VP D+ P DS+ K+ E GST++ G G+ ++L+P+ GSIIG+ G+ I
Sbjct: 16 VPIDLDPPDSR---KRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTI 72
Query: 153 KKIVEETRARIKIL---DGPPGTTERAVMISAKEE 184
++ +ET A IK+ D PGTTER +I E
Sbjct: 73 VQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVE 107
>UNIPROTKB|D4A6P7 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003723 IPI:IPI00951323
Ensembl:ENSRNOT00000066327 ArrayExpress:D4A6P7 Uniprot:D4A6P7
Length = 155
Score = 133 (51.9 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 36/95 (37%), Positives = 53/95 (55%)
Query: 93 VPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFI 152
VP D+ P DS+ K+ E GST++ G G+ ++L+P+ GSIIG+ G+ I
Sbjct: 15 VPIDLDPPDSR---KRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTI 71
Query: 153 KKIVEETRARIKIL---DGPPGTTERAVMISAKEE 184
++ +ET A IK+ D PGTTER +I E
Sbjct: 72 VQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE 106
>UNIPROTKB|F8VWQ4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021922
ProteinModelPortal:F8VWQ4 SMR:F8VWQ4 PRIDE:F8VWQ4
Ensembl:ENST00000550927 ArrayExpress:F8VWQ4 Bgee:F8VWQ4
Uniprot:F8VWQ4
Length = 308
Score = 151 (58.2 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 71/284 (25%), Positives = 115/284 (40%)
Query: 203 IVDGLDSDSSHAPSGTGGK--VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGA 260
++ G D SS S + V+ +L+VPASQ GSLIGK G +K I+E++ V+V G
Sbjct: 19 LMHGKDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG- 77
Query: 261 EDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVDRSIIPLFEMHMQMPNPQMDH 320
+ LP +R + + G + + ++ I + + L P P P
Sbjct: 78 DMLPN---STERAITIAGIPQSIIECVKQICVVMLETLSQSP--PKGVTIPYRPKPSSSP 132
Query: 321 IXXXXXXXXXXXXXXXXXXXXXH-----NPQYMPPPRQAESYYPPADLPPPMEKQPHQGI 375
+ NP PP +A + +P P + HQ +
Sbjct: 133 VIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLHQ-L 191
Query: 376 SAYGREAPVNVHGSSN----AQSTPSM---------ITQVTQ-QMQIPLSYADAVIGTAG 421
+ P+ HG++ S+P + Q T ++ IP +IG G
Sbjct: 192 AMQQSHFPMT-HGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQG 250
Query: 422 ASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLI 465
A I+ IR+ SGA + I + V I+G+A+ + AQ LI
Sbjct: 251 AKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 294
>UNIPROTKB|F1LXN9 [details] [associations]
symbol:F1LXN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 IPI:IPI00777906
Ensembl:ENSRNOT00000017403 Uniprot:F1LXN9
Length = 376
Score = 115 (45.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 402 VTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTA 461
+T Q+ IP ++IG G I I SGA++ E G + + I+GT Q+Q A
Sbjct: 299 ITTQITIPKDLTGSIIGEGGQRIKQICHESGASIKTDELEGSEDRIII-ITGTQDQIQNA 357
Query: 462 QQLIQNFMAEAAAP 475
Q L+QN + + + P
Sbjct: 358 QYLLQNSVKQYSVP 371
Score = 79 (32.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 26/101 (25%), Positives = 47/101 (46%)
Query: 88 VPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESV---FRMLVPAQKVGSI 144
VP+ PE I+ + + K E+ + T ++ + G +L+ G I
Sbjct: 49 VPDSSGPEHILSIGADI--KTIGEILRKIVPTLEECQHYRGSDFDCELGLLIQQSLAGGI 106
Query: 145 IGRKGEFIKKIVEETRARIK-ILDGPPGTTERAVMISAKEE 184
IG KG +K++ E T+ +K + P +T+R V+I K +
Sbjct: 107 IGVKGAKVKELRENTQTTVKRFQEWCPHSTDRVVLIGGKPD 147
Score = 65 (27.9 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 33/122 (27%), Positives = 55/122 (45%)
Query: 173 TERAVMISAKEE--PESSLPPAMD--GLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLV 228
T+ + IS + PE L D + + ++IV L+ + H G+ LL+
Sbjct: 41 TDYSASISVPDSSGPEHILSIGADIKTIGEILRKIVPTLE-ECQHY-RGSDFDCELGLLI 98
Query: 229 PASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAME 288
S AG +IG +G VK ++E + V+ E P DRVV + G V + ++
Sbjct: 99 QQSLAGGIIGVKGAKVKELRENTQTTVKRF-QEWCPH---STDRVVLIGGKPDRVVECIK 154
Query: 289 LI 290
+I
Sbjct: 155 II 156
Score = 46 (21.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 218 TGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDL 263
T V +++L+ + AG++IGK +++ AS + G E +
Sbjct: 13 TDEMVESRILLQSENAGAVIGKNIKALRTDYSASISVPDSSGPEHI 58
Score = 42 (19.8 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILD--GP 169
R+L+ ++ G++IG+ IK + + A I + D GP
Sbjct: 20 RILLQSENAGAVIGKN---IKALRTDYSASISVPDSSGP 55
>UNIPROTKB|Q7JPS0 [details] [associations]
symbol:Psi "PSI" species:7242 "Drosophila sp." [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0048024 "regulation
of mRNA splicing, via spliceosome" evidence=IMP] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA;IMP] [GO:0005685 "U1 snRNP" evidence=IPI]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0003729 GO:GO:0006397
GO:GO:0007283 GO:GO:0048025 GO:GO:0000381 InterPro:IPR015096
Pfam:PF09005 PDB:2BN5 PDBsum:2BN5 FlyBase:FBgn0014870 EMBL:S75665
PDB:2BN6 PDBsum:2BN6 ProteinModelPortal:Q7JPS0 SMR:Q7JPS0
InParanoid:Q7JPS0 EvolutionaryTrace:Q7JPS0 Uniprot:Q7JPS0
Length = 796
Score = 116 (45.9 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 41/154 (26%), Positives = 76/154 (49%)
Query: 124 PGWPGESVFR-MLVPAQKVGSIIGRKGEFIKKIVEETRARIKIL-DGPPGTTERAVMISA 181
PG G ++ +++P KVG +IG+ G+ IK++ E+T A++ I+ DGP + + IS
Sbjct: 205 PGPSGYPPYQEIMIPGAKVGLVIGKGGDTIKQLQEKTGAKMIIIQDGPNQELIKPLRISG 264
Query: 182 KEEP-ESSLPPAMDGLLRVHKRIVD-----------GLDSDSSHAPSGTGGKVSTKLLVP 229
+ + E + +D + + + G ++ +G GG+ ST++ VP
Sbjct: 265 EAQKIEHAKQMVLDLIAQKDAQGQQQGGRGGGGGGGGPGMGFNNFNNGNGGE-STEVFVP 323
Query: 230 ASQAGSLIGKQGGTVKSIQEASNCIVRVL-GAED 262
G +IGK G ++ IQ C ++ + G D
Sbjct: 324 KIAVGVVIGKGGDMIRKIQTECGCKLQFIQGKND 357
Score = 86 (35.3 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 30/103 (29%), Positives = 45/103 (43%)
Query: 387 HGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGA-TVTIQETRGVPG 445
+G ++AQ IT + +P S VIG G +I I + SGA T + P
Sbjct: 417 YGVNHAQGGREEITFL-----VPASKCGIVIGRGGETIKLINQQSGAHTEMDRNASNPPN 471
Query: 446 EMTVEISGTASQVQTAQQLI-QNFMAEAAAPSQAQMGASADQG 487
E + GT QV+ A+Q+I + E S+ +G G
Sbjct: 472 EKLFKSKGTTDQVEAARQMISEKINMELNVISRKPIGGGPGGG 514
>TAIR|locus:2012713 [details] [associations]
symbol:AT1G33680 "AT1G33680" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084 SMART:SM00322
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0003723
eggNOG:NOG300923 KO:K13210 UniGene:At.39892 UniGene:At.71035
HOGENOM:HOG000242545 EMBL:AK229850 EMBL:AK229909 EMBL:AK230055
IPI:IPI00786006 RefSeq:NP_174629.3 ProteinModelPortal:Q0WLY0
SMR:Q0WLY0 STRING:Q0WLY0 PaxDb:Q0WLY0 PRIDE:Q0WLY0
EnsemblPlants:AT1G33680.1 GeneID:840259 KEGG:ath:AT1G33680
TAIR:At1g33680 InParanoid:Q0WLY0 OMA:PSYGSTP PhylomeDB:Q0WLY0
ProtClustDB:CLSN2690290 Genevestigator:Q0WLY0 Uniprot:Q0WLY0
Length = 763
Score = 118 (46.6 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 46/186 (24%), Positives = 88/186 (47%)
Query: 108 QENEVNLAVGSTEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKI-- 165
+ EVN GST K+ + R+ VP+ KVG++IG+ GE ++ + + A+I+I
Sbjct: 213 ESKEVN--GGSTHKEVDDTQS-TTRRIDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQIRR 269
Query: 166 -LDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVST 224
+ P + R V I S + A + L+ ++ +++ A + G
Sbjct: 270 DAEADPSSALRPVEIIGTV---SCIEKA-EKLINA---VIAEVEAGGVPALAARGVPEQM 322
Query: 225 KLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVH 284
++ VP+ + G +IG+ G T+K++Q S ++++ + +R V + GD +
Sbjct: 323 EIKVPSDKVGVIIGRGGETIKNMQTKSRARIQLIPQNEGDA---SKERTVRISGDKRQID 379
Query: 285 KAMELI 290
A LI
Sbjct: 380 IATALI 385
Score = 105 (42.0 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 38/125 (30%), Positives = 55/125 (44%)
Query: 392 AQSTPSMITQ-VTQQMQI--PLSYADAVIGTAGASISYIRRSSGATVT-IQETRG-VPGE 446
A P++ + V +QM+I P +IG G +I ++ S A + I + G E
Sbjct: 307 AGGVPALAARGVPEQMEIKVPSDKVGVIIGRGGETIKNMQTKSRARIQLIPQNEGDASKE 366
Query: 447 MTVEISGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPP---SNPG 503
TV ISG Q+ A LI++ M + PS G + Q Y P G PP S
Sbjct: 367 RTVRISGDKRQIDIATALIKDVMYQDGRPSPYSGGFN-QQAYQPRGP--GGPPQWGSRGP 423
Query: 504 HAGHA 508
H H+
Sbjct: 424 HGPHS 428
Score = 104 (41.7 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 40/135 (29%), Positives = 63/135 (46%)
Query: 94 PEDIVPEDSQLQEKQENEVNLAVGSTEKKW-PGWPGESV---FRMLVPAQKVGSIIGRKG 149
P +I+ S + EK E +N + E P V + VP+ KVG IIGR G
Sbjct: 281 PVEIIGTVSCI-EKAEKLINAVIAEVEAGGVPALAARGVPEQMEIKVPSDKVGVIIGRGG 339
Query: 150 EFIKKIVEETRARIKILDGPPG--TTERAVMISA-KEEPESSLPPAMDGLLRVHKRI-VD 205
E IK + ++RARI+++ G + ER V IS K + + + D + + +
Sbjct: 340 ETIKNMQTKSRARIQLIPQNEGDASKERTVRISGDKRQIDIATALIKDVMYQDGRPSPYS 399
Query: 206 GLDSDSSHAPSGTGG 220
G + ++ P G GG
Sbjct: 400 GGFNQQAYQPRGPGG 414
Score = 96 (38.9 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 28/87 (32%), Positives = 47/87 (54%)
Query: 207 LDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVL-GAEDLPV 265
++ S+H + ++ VP+S+ G+LIGK G V+ +Q S +++ AE P
Sbjct: 217 VNGGSTHKEVDDTQSTTRRIDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPS 276
Query: 266 FALQDDRVVEVVGDASGVHKAMELIGS 292
AL R VE++G S + KA +LI +
Sbjct: 277 SAL---RPVEIIGTVSCIEKAEKLINA 300
Score = 83 (34.3 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 44/174 (25%), Positives = 59/174 (33%)
Query: 350 PPRQAESYYPPADLPPPM-------EKQPHQG-ISAYGREA-----PVNVHGSSNAQS-T 395
PP YPP +PP ++ PH G YGR+ PV HG+S +Q+
Sbjct: 448 PPNSGG--YPPQHMPPRSGYGSGWEQRPPHSGPYDYYGRQGGQNPGPVPSHGASYSQAGA 505
Query: 396 PSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETR--GVPGEMTVEISG 453
Q+ Q G G S + G Q +R G+ G
Sbjct: 506 QQTYGQMYDQPHYDNPPMHQSYGGYGGSQQGYPSAGGQHQMQQPSRPYGMQGSAEQGYGP 565
Query: 454 TASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSNPGHAGH 507
Q AAPS A+A G P A YGS P+ P + +
Sbjct: 566 PRPAAPPGDVPYQG--PTPAAPSYGSTPAAASYGSTPAAPSYGSTPAAPSYGSN 617
Score = 60 (26.2 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 45/182 (24%), Positives = 61/182 (33%)
Query: 345 PQYMPPPRQAESYYPPADLPPPMEKQPHQG-ISAYGREA-----PVNVHGSSNAQS-TPS 397
PQ+MPP S + ++ PH G YGR+ PV HG+S +Q+
Sbjct: 456 PQHMPPRSGYGSGWE--------QRPPHSGPYDYYGRQGGQNPGPVPSHGASYSQAGAQQ 507
Query: 398 MITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETR--GVPGEMTVEISGTA 455
Q+ Q G G S + G Q +R G+ G
Sbjct: 508 TYGQMYDQPHYDNPPMHQSYGGYGGSQQGYPSAGGQHQMQQPSRPYGMQGSAEQGYGPPR 567
Query: 456 SQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSNPGHA---------G 506
Q AAPS A+A G P A YGS P+ P + G
Sbjct: 568 PAAPPGDVPYQG--PTPAAPSYGSTPAAASYGSTPAAPSYGSTPAAPSYGSNMAQQQQYG 625
Query: 507 HA 508
+A
Sbjct: 626 YA 627
Score = 51 (23.0 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 37/176 (21%), Positives = 57/176 (32%)
Query: 345 PQY-MPPPRQAESYYPPADLPPPM---EKQPHQGISAYGREAPVNV-HGSSNAQSTPSMI 399
P Y PP Q+ Y + P + Q Q YG + +G + P +
Sbjct: 516 PHYDNPPMHQSYGGYGGSQQGYPSAGGQHQMQQPSRPYGMQGSAEQGYGPPRPAAPPGDV 575
Query: 400 TQVTQQMQIPLSY----ADAVIGTAGASISY----IRRSSGATVTIQETRGVPGEMTVEI 451
P SY A A G+ A+ SY S G+ + Q+ G +
Sbjct: 576 PYQGPTPAAP-SYGSTPAAASYGSTPAAPSYGSTPAAPSYGSNMAQQQQYGYASSAPTQQ 634
Query: 452 SGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPPSNPGHAGH 507
+ + A AP+ Q GA G + YG P G++ +
Sbjct: 635 TYPSYSSAAPSDGYNGTQPPAVAPAYEQHGAQPASGVQQTSGGYGQVPPTGGYSSY 690
Score = 48 (22.0 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 19/75 (25%), Positives = 28/75 (37%)
Query: 350 PPRQAESYYPPADLPPPMEKQPHQGISAYG---REAPVNVHGSSNAQSTPSMITQVTQQM 406
PP S YP P P Q YG + P G+++A + P+ T +Q
Sbjct: 682 PPTGGYSSYPSTQ--PAYGNTPAQSNGNYGYIGSQYPSYGGGNASAYAAPTGQTAYSQTA 739
Query: 407 QIPLSYADAVIGTAG 421
Y + +AG
Sbjct: 740 PPQAGYEQSATQSAG 754
>TAIR|locus:2140513 [details] [associations]
symbol:AT4G10070 "AT4G10070" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0009688 "abscisic acid biosynthetic process"
evidence=RCA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002687 GO:GO:0003723
UniGene:At.33655 IPI:IPI01020077 RefSeq:NP_192745.2
ProteinModelPortal:F4JLJ3 SMR:F4JLJ3 EnsemblPlants:AT4G10070.1
GeneID:826598 KEGG:ath:AT4G10070 OMA:PSTHAIG ArrayExpress:F4JLJ3
Uniprot:F4JLJ3
Length = 725
Score = 135 (52.6 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 67/241 (27%), Positives = 108/241 (44%)
Query: 66 DQLTEDQV-PEDHVP---EDQVPEDHVPE-DQVPEDIVPEDSQLQEKQEN-EVNLAVGST 119
DQ T+DQV PED+ ED +H D +++ SQ K+EN EV+ G
Sbjct: 109 DQPTDDQVKPEDNQQGCIEDVNGGEHQKVIDDDSKEVNDGSSQENGKEENKEVD---GEK 165
Query: 120 EKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKIL---DGPPGTTERA 176
+K + R+ VP+ KVG +IG+ GE I+ + + A+I+IL + P + R
Sbjct: 166 SQKEVDGTQSTTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSALRP 225
Query: 177 VMISAK----EEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQ 232
V I E E + + + S+HA G ++ K VP +
Sbjct: 226 VEIIGSVACIESAEKLISAVIAEAEAGGSPALVARGHPSTHA-IGIPEQIEIK--VPNDK 282
Query: 233 AGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQD---DRVVEVVGDASGVHKAMEL 289
G +IG+ G T+K++Q S +++ P A D +R V + GD + A ++
Sbjct: 283 VGLIIGRGGETIKNMQTRSGARTQLI-----PQHAEGDGLKERTVRISGDKMQIDIATDM 337
Query: 290 I 290
I
Sbjct: 338 I 338
Score = 107 (42.7 bits), Expect = 2.9e-07, Sum P(3) = 2.9e-07
Identities = 39/128 (30%), Positives = 56/128 (43%)
Query: 387 HGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI--QETRGVP 444
H S++A P I ++++P +IG G +I ++ SGA + Q G
Sbjct: 262 HPSTHAIGIPEQI-----EIKVPNDKVGLIIGRGGETIKNMQTRSGARTQLIPQHAEG-D 315
Query: 445 G--EMTVEISGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSPP--- 499
G E TV ISG Q+ A +I++ M + A PS + G Y P G PP
Sbjct: 316 GLKERTVRISGDKMQIDIATDMIKDVMNQNARPS-SYSGGYNQPAYRPQGP--GGPPQWG 372
Query: 500 SNPGHAGH 507
S HA H
Sbjct: 373 SRGPHAPH 380
Score = 93 (37.8 bits), Expect = 2.9e-07, Sum P(3) = 2.9e-07
Identities = 30/90 (33%), Positives = 48/90 (53%)
Query: 204 VDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVL-GAED 262
VDG S GT + ++ VP+S+ G LIGK G T++ +Q S +++L +E
Sbjct: 161 VDG--EKSQKEVDGTQS-TTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEA 217
Query: 263 LPVFALQDDRVVEVVGDASGVHKAMELIGS 292
P AL R VE++G + + A +LI +
Sbjct: 218 DPSSAL---RPVEIIGSVACIESAEKLISA 244
Score = 40 (19.1 bits), Expect = 2.9e-07, Sum P(3) = 2.9e-07
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 98 VPEDSQLQE-KQENE 111
V E+ QLQE K+EN+
Sbjct: 69 VKEEEQLQEPKEENQ 83
Score = 40 (19.1 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 475 PSQAQMGASAD---QGYNPYASMYGSPPSNP 502
P A +S D QG P A YGS P
Sbjct: 549 PQPAAAASSGDVPYQGATPAAPSYGSTNMAP 579
>WB|WBGene00007534 [details] [associations]
symbol:C12D8.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016246 "RNA
interference" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0016246
GO:GO:0003723 EMBL:Z73969 KO:K13210 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 HOGENOM:HOG000018892
GeneID:179423 KEGG:cel:CELE_C12D8.1 UCSC:C12D8.1b CTD:179423
NextBio:905322 PIR:T19217 RefSeq:NP_505633.1
ProteinModelPortal:Q17936 SMR:Q17936 IntAct:Q17936
MINT:MINT-1038809 STRING:Q17936 PRIDE:Q17936
EnsemblMetazoa:C12D8.1b WormBase:C12D8.1b InParanoid:Q17936
OMA:PERCAVI ArrayExpress:Q17936 Uniprot:Q17936
Length = 611
Score = 132 (51.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 44/159 (27%), Positives = 74/159 (46%)
Query: 134 MLVPAQKVGSIIGRKGEFIKKIVEETRARIKIL-DGPPGTTERAVMISAKEEPESSLPPA 192
++VP VG IIG++G+ IK++ ET +I+ D P T ER +I + + A
Sbjct: 253 VVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAVIMGTRD---QIYRA 309
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLL-VPASQAGSLIGKQGGTVKSIQEAS 251
+ + + K+ + A + + ST + VPA++ G +IGK G T+K I S
Sbjct: 310 TERITELVKKSTMQQGGGGNVAGAMVSNEASTFYMSVPAAKCGLVIGKGGETIKQINSES 369
Query: 252 NCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+ + D P D++V + G + A LI
Sbjct: 370 GAHCEL--SRD-PT-GNADEKVFVIKGGKRAIEHAKHLI 404
Score = 130 (50.8 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 41/197 (20%), Positives = 91/197 (46%)
Query: 106 EKQENEVNLAVGSTEKKWP--GWP-GESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR 162
E ++ +N V ++ P G+P ++ + +P + G IIG+ G+ I+++ E++ +
Sbjct: 128 ETAKHLINEVVARSQNPRPQYGFPRAQTTIDIAIPPNRCGLIIGKSGDTIRQLQEKSGCK 187
Query: 163 IKILDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDGLDSDS---SHAPSGTG 219
+ ++ ++++ + +P+ + A + + DG HA G G
Sbjct: 188 MILVQDNQSVSDQSKPLRITGDPQK-IELAKQLVAEILNSGGDGNGGSGLQMHHAGGGGG 246
Query: 220 GKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGD 279
+++VP S G +IGKQG T+K + + ++ +D P +R ++G
Sbjct: 247 ASARGEVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDD-PS---TPERCAVIMGT 302
Query: 280 ASGVHKAMELIGSHLRK 296
+++A E I ++K
Sbjct: 303 RDQIYRATERITELVKK 319
Score = 108 (43.1 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 39/161 (24%), Positives = 73/161 (45%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKIL-DGPPGTTERAVMISAKEEPESSLPPAMD 194
+P VG +IGR G I+ I + R+++ D P + R V + E S++ A
Sbjct: 76 IPESAVGIVIGRGGSEIQGIQAKAGCRVQMSPDADPSSGVRMVTL---EGSRSNVETAKH 132
Query: 195 GLLRVHKRIVDGLDSDSSHAPSG-TGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNC 253
+ V R S + G + + + +P ++ G +IGK G T++ +QE S C
Sbjct: 133 LINEVVAR------SQNPRPQYGFPRAQTTIDIAIPPNRCGLIIGKSGDTIRQLQEKSGC 186
Query: 254 IVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHL 294
+++ +D + Q + + + GD + A +L+ L
Sbjct: 187 --KMILVQDNQSVSDQS-KPLRITGDPQKIELAKQLVAEIL 224
Score = 65 (27.9 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI-QETRGVPGEMTVEISGTASQVQTA 461
T M +P + VIG G +I I SGA + ++ G E I G ++ A
Sbjct: 341 TFYMSVPAAKCGLVIGKGGETIKQINSESGAHCELSRDPTGNADEKVFVIKGGKRAIEHA 400
Query: 462 QQLIQ 466
+ LI+
Sbjct: 401 KHLIR 405
Score = 44 (20.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 25/107 (23%), Positives = 40/107 (37%)
Query: 401 QVTQQMQIPLSYA-------DAVIGTAGASISYIR--RSSGATVTIQETRGVPGEMTVEI 451
QV QQ+Q + A D V G S ++ +S GA + V +M +
Sbjct: 498 QVVQQVQPATTVAATTTPTVDPVTGEQDYSAQWMEYYKSIGAH---DKAEAVEAQMKKKK 554
Query: 452 SGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSP 498
+ A++ LIQ A P + Q Y Y++ +P
Sbjct: 555 AEAAARAVVPGGLIQQMPMGMAMPQMSAQARVPTQNYPAYSAAGAAP 601
Score = 41 (19.5 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 443 VPGEMTVEIS-GTASQVQTAQQLI--QNF---MAEAAAPSQAQ 479
VPG + ++ G A +AQ + QN+ A AAP QAQ
Sbjct: 563 VPGGLIQQMPMGMAMPQMSAQARVPTQNYPAYSAAGAAPYQAQ 605
>UNIPROTKB|Q17936 [details] [associations]
symbol:C12D8.1 "Protein C12D8.1, isoform b" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0016246 GO:GO:0003723
EMBL:Z73969 KO:K13210 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 HOGENOM:HOG000018892
GeneID:179423 KEGG:cel:CELE_C12D8.1 UCSC:C12D8.1b CTD:179423
NextBio:905322 PIR:T19217 RefSeq:NP_505633.1
ProteinModelPortal:Q17936 SMR:Q17936 IntAct:Q17936
MINT:MINT-1038809 STRING:Q17936 PRIDE:Q17936
EnsemblMetazoa:C12D8.1b WormBase:C12D8.1b InParanoid:Q17936
OMA:PERCAVI ArrayExpress:Q17936 Uniprot:Q17936
Length = 611
Score = 132 (51.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 44/159 (27%), Positives = 74/159 (46%)
Query: 134 MLVPAQKVGSIIGRKGEFIKKIVEETRARIKIL-DGPPGTTERAVMISAKEEPESSLPPA 192
++VP VG IIG++G+ IK++ ET +I+ D P T ER +I + + A
Sbjct: 253 VVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAVIMGTRD---QIYRA 309
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLL-VPASQAGSLIGKQGGTVKSIQEAS 251
+ + + K+ + A + + ST + VPA++ G +IGK G T+K I S
Sbjct: 310 TERITELVKKSTMQQGGGGNVAGAMVSNEASTFYMSVPAAKCGLVIGKGGETIKQINSES 369
Query: 252 NCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+ + D P D++V + G + A LI
Sbjct: 370 GAHCEL--SRD-PT-GNADEKVFVIKGGKRAIEHAKHLI 404
Score = 130 (50.8 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 41/197 (20%), Positives = 91/197 (46%)
Query: 106 EKQENEVNLAVGSTEKKWP--GWP-GESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRAR 162
E ++ +N V ++ P G+P ++ + +P + G IIG+ G+ I+++ E++ +
Sbjct: 128 ETAKHLINEVVARSQNPRPQYGFPRAQTTIDIAIPPNRCGLIIGKSGDTIRQLQEKSGCK 187
Query: 163 IKILDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDGLDSDS---SHAPSGTG 219
+ ++ ++++ + +P+ + A + + DG HA G G
Sbjct: 188 MILVQDNQSVSDQSKPLRITGDPQK-IELAKQLVAEILNSGGDGNGGSGLQMHHAGGGGG 246
Query: 220 GKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGD 279
+++VP S G +IGKQG T+K + + ++ +D P +R ++G
Sbjct: 247 ASARGEVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDD-PS---TPERCAVIMGT 302
Query: 280 ASGVHKAMELIGSHLRK 296
+++A E I ++K
Sbjct: 303 RDQIYRATERITELVKK 319
Score = 108 (43.1 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 39/161 (24%), Positives = 73/161 (45%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKIL-DGPPGTTERAVMISAKEEPESSLPPAMD 194
+P VG +IGR G I+ I + R+++ D P + R V + E S++ A
Sbjct: 76 IPESAVGIVIGRGGSEIQGIQAKAGCRVQMSPDADPSSGVRMVTL---EGSRSNVETAKH 132
Query: 195 GLLRVHKRIVDGLDSDSSHAPSG-TGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNC 253
+ V R S + G + + + +P ++ G +IGK G T++ +QE S C
Sbjct: 133 LINEVVAR------SQNPRPQYGFPRAQTTIDIAIPPNRCGLIIGKSGDTIRQLQEKSGC 186
Query: 254 IVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHL 294
+++ +D + Q + + + GD + A +L+ L
Sbjct: 187 --KMILVQDNQSVSDQS-KPLRITGDPQKIELAKQLVAEIL 224
Score = 65 (27.9 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI-QETRGVPGEMTVEISGTASQVQTA 461
T M +P + VIG G +I I SGA + ++ G E I G ++ A
Sbjct: 341 TFYMSVPAAKCGLVIGKGGETIKQINSESGAHCELSRDPTGNADEKVFVIKGGKRAIEHA 400
Query: 462 QQLIQ 466
+ LI+
Sbjct: 401 KHLIR 405
Score = 44 (20.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 25/107 (23%), Positives = 40/107 (37%)
Query: 401 QVTQQMQIPLSYA-------DAVIGTAGASISYIR--RSSGATVTIQETRGVPGEMTVEI 451
QV QQ+Q + A D V G S ++ +S GA + V +M +
Sbjct: 498 QVVQQVQPATTVAATTTPTVDPVTGEQDYSAQWMEYYKSIGAH---DKAEAVEAQMKKKK 554
Query: 452 SGTASQVQTAQQLIQNFMAEAAAPSQAQMGASADQGYNPYASMYGSP 498
+ A++ LIQ A P + Q Y Y++ +P
Sbjct: 555 AEAAARAVVPGGLIQQMPMGMAMPQMSAQARVPTQNYPAYSAAGAAP 601
Score = 41 (19.5 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 443 VPGEMTVEIS-GTASQVQTAQQLI--QNF---MAEAAAPSQAQ 479
VPG + ++ G A +AQ + QN+ A AAP QAQ
Sbjct: 563 VPGGLIQQMPMGMAMPQMSAQARVPTQNYPAYSAAGAAPYQAQ 605
>FB|FBgn0014870 [details] [associations]
symbol:Psi "P-element somatic inhibitor" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005685
"U1 snRNP" evidence=IPI] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0006397 "mRNA processing"
evidence=IDA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003729
GO:GO:0006397 GO:GO:0007283 GO:GO:0048025 GO:GO:0000381
EMBL:AL031863 InterPro:IPR015096 Pfam:PF09005 HSSP:Q96AE4
FlyBase:FBgn0014870 PIR:T13690 ProteinModelPortal:O96828 SMR:O96828
STRING:O96828 PRIDE:O96828 InParanoid:O96828 ArrayExpress:O96828
Bgee:O96828 Uniprot:O96828
Length = 806
Score = 122 (48.0 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 50/193 (25%), Positives = 89/193 (46%)
Query: 124 PGWPGESVFR-MLVPAQKVGSIIGRKGEFIKKIVEETRARIKIL-DGPPGTTERAVMISA 181
PG G ++ +++P KVG +IG+ G+ IK++ E+T A++ I+ DGP + + IS
Sbjct: 218 PGPSGYPPYQEIMIPGAKVGLVIGKGGDTIKQLQEKTGAKMIIIQDGPNQELIKPLRISG 277
Query: 182 KEEP-ESSLPPAMDGLLRVHKRIVD-----------GLDSDSSHAPSGTGGKVSTKLLVP 229
+ + E + +D + + + G ++ +G GG+ ST++ VP
Sbjct: 278 EAQKIEHAKQMVLDLIAQKDAQGQQQGGRGGGGGGGGPGMGFNNFNNGNGGE-STEVFVP 336
Query: 230 ASQAGSLIGKQGGTVKSIQEASNCIVRVL-GAEDLPVFALQDDRVVEVVGDASGVHKAME 288
G +IGK G ++ IQ C ++ + G D + D R V + G V A
Sbjct: 337 KIAVGVVIGKGGDMIRKIQTECGCKLQFIQGKND----EMGDRRCV-IQGTRQQVDDAKR 391
Query: 289 LIGSHLRKFLVDR 301
I + +V R
Sbjct: 392 TIDGLIENVMVSR 404
Score = 76 (31.8 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 23/74 (31%), Positives = 33/74 (44%)
Query: 416 VIGTAGASISYIRRSSGA-TVTIQETRGVPGEMTVEISGTASQVQTAQQLI-QNFMAEAA 473
VIG G +I I + SGA T + P E + GT QV+ A+Q+I + E
Sbjct: 450 VIGRGGETIKLINQQSGAHTEMDRNASNPPNEKLFKSKGTTDQVEAARQMISEKINMELN 509
Query: 474 APSQAQMGASADQG 487
S+ +G G
Sbjct: 510 VISRKPIGGGPGGG 523
>TAIR|locus:2043530 [details] [associations]
symbol:AT2G25970 "AT2G25970" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005829 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 EMBL:AC004747 EMBL:AC005395
eggNOG:NOG300923 KO:K13210 HSSP:Q9UNW9 EMBL:AY078954 EMBL:AK226845
IPI:IPI00540360 PIR:T02627 RefSeq:NP_180167.1 UniGene:At.21555
ProteinModelPortal:O82762 SMR:O82762 STRING:O82762 PaxDb:O82762
PRIDE:O82762 ProMEX:O82762 EnsemblPlants:AT2G25970.1 GeneID:817137
KEGG:ath:AT2G25970 TAIR:At2g25970 HOGENOM:HOG000242545
InParanoid:O82762 OMA:AANSTQD PhylomeDB:O82762
ProtClustDB:CLSN2913011 ArrayExpress:O82762 Genevestigator:O82762
Uniprot:O82762
Length = 632
Score = 129 (50.5 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 39/159 (24%), Positives = 71/159 (44%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKI---LDGPPGTTERAVMISAKEEPESSLPPA 192
+P +VG IIG+ GE IK + ++ A+I++ +D P R V ++ + S
Sbjct: 140 IPNMRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNCATRTVDLTGTPDQISKAEQL 199
Query: 193 M-DGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEAS 251
+ D L G G G + +P ++ G +IGK G T+KS+Q +
Sbjct: 200 ITDVLQEAEAGNTAGSGGGGGRRMGGQAGADQFVMKIPNNKVGLIIGKGGETIKSMQAKT 259
Query: 252 NCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
++V+ LP +R +++ G + A +L+
Sbjct: 260 GARIQVIPLH-LPPGDPTPERTLQIDGITEQIEHAKQLV 297
Score = 116 (45.9 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 32/112 (28%), Positives = 54/112 (48%)
Query: 406 MQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPG----EMTVEISGTASQVQTA 461
M+IP + +IG G +I ++ +GA + + PG E T++I G Q++ A
Sbjct: 234 MKIPNNKVGLIIGKGGETIKSMQAKTGARIQVIPLHLPPGDPTPERTLQIDGITEQIEHA 293
Query: 462 QQLIQNFMAEAAAPSQAQMGASADQ--GYN--PYASMY--GSPPSNPGHAGH 507
+QL+ ++ + MG Q GY P +S G PP+ PG+ G+
Sbjct: 294 KQLVNEIISGENRMRNSAMGGGYPQQGGYQARPPSSWAPPGGPPAQPGYGGY 345
Score = 115 (45.5 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 41/129 (31%), Positives = 57/129 (44%)
Query: 60 KEQVTEDQLTEDQVPEDHVPEDQVPEDHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGST 119
K QVT D + V P+ +Q+ D+ LQE + + G
Sbjct: 166 KIQVTRDMDADPNCATRTVDLTGTPDQISKAEQLITDV------LQEAEAGNTAGSGGGG 219
Query: 120 EKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKI--LDGPPG--TTER 175
++ G G F M +P KVG IIG+ GE IK + +T ARI++ L PPG T ER
Sbjct: 220 GRRMGGQAGADQFVMKIPNNKVGLIIGKGGETIKSMQAKTGARIQVIPLHLPPGDPTPER 279
Query: 176 AVMISAKEE 184
+ I E
Sbjct: 280 TLQIDGITE 288
Score = 74 (31.1 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 225 KLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVH 284
K+ +P + G +IGK G T+K +Q S ++V D+ R V++ G +
Sbjct: 137 KIDIPNMRVGVIIGKGGETIKYLQLQSGAKIQV--TRDMDADPNCATRTVDLTGTPDQIS 194
Query: 285 KAMELIGSHLRK 296
KA +LI L++
Sbjct: 195 KAEQLITDVLQE 206
Score = 65 (27.9 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 43/168 (25%), Positives = 66/168 (39%)
Query: 350 PPRQAESYYPPADLPPPMEKQPHQG-ISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQI 408
P + + YY + +PP +Q QG YG++ + SS S P T Q
Sbjct: 366 PQQTSAGYYDQSSVPP--SQQSAQGEYDYYGQQQ--SQQPSSGGSSAPPTDTTGYNYYQH 421
Query: 409 PLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNF 468
Y G AG Y + GA Q++ + G S +Q+
Sbjct: 422 ASGY-----GQAGQG--YQQDGYGAYNASQQSGYGQAAGYDQQGGYGSTTNPSQE---ED 471
Query: 469 MAEAAAPSQAQMGASA--DQGYNPYA------SMYGSPPSNPGHAGHA 508
++AA PS AQ G + G P A + YG+PP++ AG++
Sbjct: 472 ASQAAPPSSAQSGQAGYGTTGQQPPAQGSTGQAGYGAPPTS--QAGYS 517
Score = 55 (24.4 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 38/135 (28%), Positives = 54/135 (40%)
Query: 376 SAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATV 435
S YG+ A + G + + PS +Q P S A + G AG + + + +
Sbjct: 446 SGYGQAAGYDQQGGYGSTTNPSQEEDASQAA--PPSSAQS--GQAGYGTTGQQPPAQGS- 500
Query: 436 TIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAAP-----SQAQMGA----SADQ 486
T Q G P T + +G +SQ A A+ P SQ GA +
Sbjct: 501 TGQAGYGAPP--TSQ-AGYSSQPAAAYNSGYGAPPPASKPPTYGQSQQSPGAPGSYGSQS 557
Query: 487 GY-NPYASMYGSPPS 500
GY P AS YG PP+
Sbjct: 558 GYAQPAASGYGQPPA 572
Score = 51 (23.0 bits), Expect = 4.4e-06, Sum P(3) = 4.4e-06
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 354 AESYYPPADLPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPS 397
A +Y PPP K P G S AP + +GS + + P+
Sbjct: 521 AAAYNSGYGAPPPASKPPTYGQSQQSPGAPGS-YGSQSGYAQPA 563
Score = 44 (20.5 bits), Expect = 4.4e-06, Sum P(3) = 4.4e-06
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 476 SQAQMGASADQGYNPYASMYGSPPSNPGHA 505
S GA+A G AS +PP+ P A
Sbjct: 599 SDGSAGATAGGGGGTPASQSAAPPAGPPKA 628
Score = 39 (18.8 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 169 PPGTTERAVMISAKEEPESSLPP-AMDGL 196
PP +T R S+ P +S+ P A GL
Sbjct: 24 PPPSTRRPTGFSSGPIPSASVDPTAPTGL 52
>UNIPROTKB|J9P8J3 [details] [associations]
symbol:J9P8J3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000047704 Uniprot:J9P8J3
Length = 399
Score = 124 (48.7 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 37/101 (36%), Positives = 48/101 (47%)
Query: 367 MEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISY 426
M +P QG S Y GS P + TQVT IP A ++IG G I
Sbjct: 295 MAYEP-QGGSGYDYSY-AGGRGSYGDLGGPIITTQVT----IPKDLAGSIIGKGGQRIKQ 348
Query: 427 IRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQN 467
IR SGA++ I E + + I+GT Q+Q AQ L+QN
Sbjct: 349 IRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 389
Score = 96 (38.9 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 21/80 (26%), Positives = 44/80 (55%)
Query: 219 GGKV-STKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVV 277
GG + +T++ +P AGS+IGK G +K I+ S +++ D P+ +DR++ +
Sbjct: 320 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEG-SEDRIITIT 374
Query: 278 GDASGVHKAMELIGSHLRKF 297
G + A L+ + ++++
Sbjct: 375 GTQDQIQNAQYLLQNSVKQY 394
Score = 64 (27.6 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 218 TGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVV 277
T V ++L+ + AG++IGK G +K+++ N V V + P L +E +
Sbjct: 13 TDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSG-PERILSISADIETI 71
Query: 278 GD 279
G+
Sbjct: 72 GE 73
Score = 63 (27.2 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILD--GPPGTTERAVMISAKEE 184
R+L+ ++ G++IG+ G+ IK + + A + + D GP ER + ISA E
Sbjct: 20 RILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGP----ERILSISADIE 69
Score = 52 (23.4 bits), Expect = 9.3e-06, Sum P(2) = 9.3e-06
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 257 VLGAEDLPVFALQDDRVVEV-VGDASGVHKAMELIGSHLRKFLVDRSIIPLFEMHMQMPN 315
V+G + AL+ D V V D+SG + + + + + IIP E +Q+P+
Sbjct: 31 VIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPS 90
Query: 316 P 316
P
Sbjct: 91 P 91
Score = 38 (18.4 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 156 VEETRARIKIL-DGPPGTTERAVMISAKEE 184
+ T+ IK+ + P +T+R V+I K +
Sbjct: 107 LNNTQTTIKLFQECCPHSTDRVVLIGGKPD 136
>UNIPROTKB|G3N2N4 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048 KO:K14944
EMBL:DAAA02052552 EMBL:DAAA02052553 RefSeq:XP_001257255.3
Ensembl:ENSBTAT00000065126 GeneID:790874 KEGG:bta:790874
NextBio:20930383 Uniprot:G3N2N4
Length = 385
Score = 114 (45.2 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 41/113 (36%), Positives = 57/113 (50%)
Query: 181 AKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSG--TGGKVS-TKLLVPASQAGSLI 237
AK EP S L P K+ + + + +PS T + + K++VP S AG +I
Sbjct: 6 AKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLII 65
Query: 238 GKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
GK G TVK+I E S V++ D LQ+ RVV V G+ KA+ELI
Sbjct: 66 GKGGATVKAIMEQSGAWVQLSQKPD--GINLQE-RVVTVSGEPEQNRKAVELI 115
Score = 72 (30.4 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG--VPGEMT--VEISGTASQVQT 460
++ +P + A++G G ++ + +GA + I + +G VPG V I+GT + Q
Sbjct: 303 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISK-KGEFVPGTRNRKVTITGTPAATQA 361
Query: 461 AQQLI 465
AQ LI
Sbjct: 362 AQYLI 366
>UNIPROTKB|F8W659 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 IPI:IPI01021871
ProteinModelPortal:F8W659 SMR:F8W659 Ensembl:ENST00000547619
ArrayExpress:F8W659 Bgee:F8W659 Uniprot:F8W659
Length = 211
Score = 134 (52.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 36/95 (37%), Positives = 53/95 (55%)
Query: 93 VPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFI 152
VP D+ P DS+ K+ E GST++ G G+ ++L+P+ GSIIG+ G+ I
Sbjct: 16 VPIDLDPPDSR---KRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTI 72
Query: 153 KKIVEETRARIKIL---DGPPGTTERAVMISAKEE 184
++ +ET A IK+ D PGTTER +I E
Sbjct: 73 VQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVE 107
>UNIPROTKB|F1NP94 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:AADN02003296 EMBL:AADN02003297 EMBL:AADN02003298
EMBL:AADN02003299 EMBL:AADN02003300 EMBL:AADN02003301
EMBL:AADN02003302 EMBL:AADN02003303 EMBL:AADN02003304
EMBL:AADN02003305 EMBL:AADN02003306 EMBL:AADN02003307
EMBL:AADN02003308 EMBL:AADN02003309 EMBL:AADN02003310
EMBL:AADN02003311 EMBL:AADN02003312 EMBL:AADN02003313
EMBL:AADN02003314 EMBL:AADN02003315 IPI:IPI00584544
Ensembl:ENSGALT00000016013 ArrayExpress:F1NP94 Uniprot:F1NP94
Length = 413
Score = 114 (45.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 41/113 (36%), Positives = 57/113 (50%)
Query: 181 AKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSG--TGGKVS-TKLLVPASQAGSLI 237
AK EP S L P K+ + + + +PS T + + K++VP S AG +I
Sbjct: 34 AKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLII 93
Query: 238 GKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
GK G TVK+I E S V++ D LQ+ RVV V G+ KA+ELI
Sbjct: 94 GKGGATVKAIMEQSGAWVQLSQKPD--GINLQE-RVVTVSGEPEQNRKAVELI 143
Score = 72 (30.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG--VPGEMT--VEISGTASQVQT 460
++ +P + A++G G ++ + +GA + I + +G VPG V I+GT + Q
Sbjct: 331 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISK-KGEFVPGTRNRKVTITGTPAATQA 389
Query: 461 AQQLI 465
AQ LI
Sbjct: 390 AQYLI 394
>UNIPROTKB|B7Z770 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003729 GO:GO:0000398 IPI:IPI00019244
UniGene:Hs.31588 HGNC:HGNC:7886 HOVERGEN:HBG082048 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 EMBL:AK301526 ProteinModelPortal:B7Z770
SMR:B7Z770 STRING:B7Z770 PRIDE:B7Z770 Ensembl:ENST00000267422
ArrayExpress:B7Z770 Bgee:B7Z770 Uniprot:B7Z770
Length = 385
Score = 113 (44.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 40/113 (35%), Positives = 57/113 (50%)
Query: 181 AKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSG--TGGKVS-TKLLVPASQAGSLI 237
AK EP S L P K+ + + + +PS T + + K++VP S AG +I
Sbjct: 6 AKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLII 65
Query: 238 GKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
GK G TVK++ E S V++ D LQ+ RVV V G+ KA+ELI
Sbjct: 66 GKGGATVKAVMEQSGAWVQLSQKPD--GINLQE-RVVTVSGEPEQNRKAVELI 115
Score = 72 (30.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG--VPGEMT--VEISGTASQVQT 460
++ +P + A++G G ++ + +GA + I + +G VPG V I+GT + Q
Sbjct: 303 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISK-KGEFVPGTRNRKVTITGTPAATQA 361
Query: 461 AQQLI 465
AQ LI
Sbjct: 362 AQYLI 366
>UNIPROTKB|F1SGT5 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:CT826400 Ensembl:ENSSSCT00000031969 Uniprot:F1SGT5
Length = 417
Score = 114 (45.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 41/113 (36%), Positives = 57/113 (50%)
Query: 181 AKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSG--TGGKVS-TKLLVPASQAGSLI 237
AK EP S L P K+ + + + +PS T + + K++VP S AG +I
Sbjct: 38 AKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLII 97
Query: 238 GKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
GK G TVK+I E S V++ D LQ+ RVV V G+ KA+ELI
Sbjct: 98 GKGGATVKAIMEQSGAWVQLSQKPD--GINLQE-RVVTVSGEPEQNRKAVELI 147
Score = 72 (30.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG--VPGEMT--VEISGTASQVQT 460
++ +P + A++G G ++ + +GA + I + +G VPG V I+GT + Q
Sbjct: 335 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISK-KGEFVPGTRNRKVTITGTPAATQA 393
Query: 461 AQQLI 465
AQ LI
Sbjct: 394 AQYLI 398
>RGD|1591989 [details] [associations]
symbol:LOC367191 "similar to Poly(rC)-binding protein 2
(Alpha-CP2) (Putative heterogeneous nuclear ribonucleoprotein X)
(hnRNP X) (CTBP) (CBP)" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1591989 GO:GO:0003723 IPI:IPI00555167
Ensembl:ENSRNOT00000037460 OMA:KARITIS Uniprot:D3ZTH3
Length = 107
Score = 117 (46.2 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 35/103 (33%), Positives = 59/103 (57%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G +R + ++ P
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPKRIITLAG---------PT 65
Query: 193 MDGLLRVHKRIVDGLDSD-SSHAPSGTGGK---VSTKLLVPAS 231
+ + + I+D L+ D SS + T + V+++L+VPAS
Sbjct: 66 -NAIFKAFAMIIDKLEEDISSSMTNSTAARRPPVTSRLVVPAS 107
>WB|WBGene00019692 [details] [associations]
symbol:M01A10.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0006898 GO:GO:0003723 eggNOG:NOG300923
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
EMBL:FO081508 RefSeq:NP_491627.2 ProteinModelPortal:P91393
SMR:P91393 STRING:P91393 PaxDb:P91393 EnsemblMetazoa:M01A10.1
GeneID:187350 KEGG:cel:CELE_M01A10.1 UCSC:M01A10.1 CTD:187350
WormBase:M01A10.1 HOGENOM:HOG000018892 InParanoid:P91393
OMA:KARIMET NextBio:934978 Uniprot:P91393
Length = 586
Score = 131 (51.2 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 50/214 (23%), Positives = 99/214 (46%)
Query: 83 VPEDHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESV-----FRMLVP 137
+ E+++ + P I + +++ + ++ G E G G S ++ VP
Sbjct: 185 IQENNIADSVKPLQITGQPKEVEHAKALVADILDGFDECPPAGMAGNSPVAAMSLQVKVP 244
Query: 138 AQKVGSIIGRKGEFIKKIVEETRARIKIL-DGPPGTTERAVMISAKEEPESSLPPAMDGL 196
VG+I+G +G IKKI ET +I+ + D P ER +++ + +
Sbjct: 245 RSTVGAIMGLQGSNIKKISNETETKIQFMPDDDPKLMERTLVVIGNKNK-------VYVC 297
Query: 197 LRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVR 256
R+ ++IV+ +S++++ P +L+PAS+ G +IG+ G T++ I + S
Sbjct: 298 ARLLQKIVEA-NSENANTPISL-----FYMLIPASKCGLVIGRGGETIRQINKESGAYCE 351
Query: 257 VLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+ + D + A++ V+ G + V A LI
Sbjct: 352 M--SRDPSISAIEKQFVIR--GSETQVEHAKHLI 381
Score = 112 (44.5 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 39/167 (23%), Positives = 77/167 (46%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMI-SAKEEPESSLPPAMD 194
+P + VG +IGR G I+ I +++ R++I+ P T R+V I E E + +
Sbjct: 58 IPEESVGLVIGRNGVEIQAISQKSGCRVQIVAEPSTTGYRSVDIYGISENIEVAKKLINE 117
Query: 195 GLLRVHKRIVDGLDSDSSH---APS-GTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEA 250
+ R K + L P+ KV+ + +PA++ G++IGK+G ++ ++
Sbjct: 118 VVARGRKLSQEPLPCSVPQFQPIPAVSNSSKVTIIIPIPANKCGAIIGKKGEQMRKLRSW 177
Query: 251 SNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKF 297
+NC ++ ++ + +++ G V A L+ L F
Sbjct: 178 TNCDFILIQENNIA----DSVKPLQITGQPKEVEHAKALVADILDGF 220
Score = 74 (31.1 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 406 MQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPG-EMTVEISGTASQVQTAQQL 464
M IP S VIG G +I I + SGA + + E I G+ +QV+ A+ L
Sbjct: 321 MLIPASKCGLVIGRGGETIRQINKESGAYCEMSRDPSISAIEKQFVIRGSETQVEHAKHL 380
Query: 465 IQ 466
I+
Sbjct: 381 IR 382
Score = 56 (24.8 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 15/74 (20%), Positives = 34/74 (45%)
Query: 397 SMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVP-GEMTVEISGTA 455
S + ++ Q+++P S A++G G++I I + + E T+ + G
Sbjct: 232 SPVAAMSLQVKVPRSTVGAIMGLQGSNIKKISNETETKIQFMPDDDPKLMERTLVVIGNK 291
Query: 456 SQVQTAQQLIQNFM 469
++V +L+Q +
Sbjct: 292 NKVYVCARLLQKIV 305
>GENEDB_PFALCIPARUM|PFF0250w [details] [associations]
symbol:PFF0250w "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:AL844505
RefSeq:XP_966041.1 ProteinModelPortal:C6KSP9 PRIDE:C6KSP9
EnsemblProtists:PFF0250w:mRNA GeneID:3885713 KEGG:pfa:PFF0250w
EuPathDB:PlasmoDB:PF3D7_0605100 HOGENOM:HOG000281436
ProtClustDB:CLSZ2497375 Uniprot:C6KSP9
Length = 755
Score = 111 (44.1 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 50/208 (24%), Positives = 99/208 (47%)
Query: 108 QENEVNLAVGSTEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKI-- 165
++ + N A STE + P + +L+P + +G +IG+ G +++I + A IK
Sbjct: 45 EDGKSNCAT-STEMRIP-------YCLLLPNRAIGYVIGKSGNNVREIEKACGAVIKCQK 96
Query: 166 -LDGP--PGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKV 222
D P +E+ + I K+E + A++ +L K ++D + D GK
Sbjct: 97 EFDVSVYPPPSEKILTIFGKKENKKK---ALELVLGKSKSVMDFQEED---------GKE 144
Query: 223 STKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASG 282
S ++VP +IG++G + S+ E S+C + V +D+P D+ + + +
Sbjct: 145 SIVIIVPTRSIPIIIGQKGSKISSLSERSSCEINV-HKDDVPGIK---DKAIFI--KSKK 198
Query: 283 VHKAMELIGS--HLRKFLVDRSIIPLFE 308
+ K ++ IG L + +V+ I+ + E
Sbjct: 199 ISKIIDCIGIIYDLLEDVVENGILTISE 226
Score = 102 (41.0 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 22/85 (25%), Positives = 44/85 (51%)
Query: 207 LDSDS-SHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPV 265
+D D S+ + T ++ LL+P G +IGK G V+ I++A +++ D+ V
Sbjct: 43 MDEDGKSNCATSTEMRIPYCLLLPNRAIGYVIGKSGNNVREIEKACGAVIKCQKEFDVSV 102
Query: 266 FALQDDRVVEVVGDASGVHKAMELI 290
+ ++++ + G KA+EL+
Sbjct: 103 YPPPSEKILTIFGKKENKKKALELV 127
Score = 77 (32.2 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQL 464
+M +P A +IG G+ I YI SG+ + + + + E V I+G+ A L
Sbjct: 465 RMLVPGKAASFLIGRKGSIIKYITEQSGSQIQVAKNKESENEKLVLITGSPEAKILASVL 524
Query: 465 IQNFMAEAAAPSQAQMG 481
+ + E P+ A+ G
Sbjct: 525 VLQKLEEYENPAIAREG 541
>UNIPROTKB|C6KSP9 [details] [associations]
symbol:PFF0250w "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:AL844505
RefSeq:XP_966041.1 ProteinModelPortal:C6KSP9 PRIDE:C6KSP9
EnsemblProtists:PFF0250w:mRNA GeneID:3885713 KEGG:pfa:PFF0250w
EuPathDB:PlasmoDB:PF3D7_0605100 HOGENOM:HOG000281436
ProtClustDB:CLSZ2497375 Uniprot:C6KSP9
Length = 755
Score = 111 (44.1 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 50/208 (24%), Positives = 99/208 (47%)
Query: 108 QENEVNLAVGSTEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKI-- 165
++ + N A STE + P + +L+P + +G +IG+ G +++I + A IK
Sbjct: 45 EDGKSNCAT-STEMRIP-------YCLLLPNRAIGYVIGKSGNNVREIEKACGAVIKCQK 96
Query: 166 -LDGP--PGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKV 222
D P +E+ + I K+E + A++ +L K ++D + D GK
Sbjct: 97 EFDVSVYPPPSEKILTIFGKKENKKK---ALELVLGKSKSVMDFQEED---------GKE 144
Query: 223 STKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASG 282
S ++VP +IG++G + S+ E S+C + V +D+P D+ + + +
Sbjct: 145 SIVIIVPTRSIPIIIGQKGSKISSLSERSSCEINV-HKDDVPGIK---DKAIFI--KSKK 198
Query: 283 VHKAMELIGS--HLRKFLVDRSIIPLFE 308
+ K ++ IG L + +V+ I+ + E
Sbjct: 199 ISKIIDCIGIIYDLLEDVVENGILTISE 226
Score = 102 (41.0 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 22/85 (25%), Positives = 44/85 (51%)
Query: 207 LDSDS-SHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPV 265
+D D S+ + T ++ LL+P G +IGK G V+ I++A +++ D+ V
Sbjct: 43 MDEDGKSNCATSTEMRIPYCLLLPNRAIGYVIGKSGNNVREIEKACGAVIKCQKEFDVSV 102
Query: 266 FALQDDRVVEVVGDASGVHKAMELI 290
+ ++++ + G KA+EL+
Sbjct: 103 YPPPSEKILTIFGKKENKKKALELV 127
Score = 77 (32.2 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQL 464
+M +P A +IG G+ I YI SG+ + + + + E V I+G+ A L
Sbjct: 465 RMLVPGKAASFLIGRKGSIIKYITEQSGSQIQVAKNKESENEKLVLITGSPEAKILASVL 524
Query: 465 IQNFMAEAAAPSQAQMG 481
+ + E P+ A+ G
Sbjct: 525 VLQKLEEYENPAIAREG 541
>WB|WBGene00016489 [details] [associations]
symbol:C36E6.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 eggNOG:NOG300923 InterPro:IPR015096
Pfam:PF09005 GeneTree:ENSGT00650000093048 HSSP:Q96AE4 EMBL:FO080802
GeneID:181773 KEGG:cel:CELE_C36E6.1 CTD:181773 HOGENOM:HOG000018892
RefSeq:NP_510825.1 ProteinModelPortal:Q9BLA0 SMR:Q9BLA0
STRING:Q9BLA0 PaxDb:Q9BLA0 PRIDE:Q9BLA0 EnsemblMetazoa:C36E6.1b
UCSC:C36E6.1a WormBase:C36E6.1b InParanoid:Q9BLA0 OMA:IQLIQEN
NextBio:915282 ArrayExpress:Q9BLA0 Uniprot:Q9BLA0
Length = 641
Score = 139 (54.0 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 92/374 (24%), Positives = 150/374 (40%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKIL-DGPPGTTERAVMISAKEEPESSLPPAMD 194
VP VG+I+G +G+ IKK+ +ET +I+ L D P ER++ I + +
Sbjct: 252 VPRCTVGAIMGLQGKNIKKLSDETGTKIQFLPDDDPKLMERSLAIIGNKNK-------VY 304
Query: 195 GLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCI 254
++ K IV+ +S++++AP V +++PAS+ G +IG+ G T+K I + S
Sbjct: 305 VCAQLIKAIVEA-NSEAANAPV-----VLFYMVIPASKCGLVIGRGGETIKQINQESGAH 358
Query: 255 VRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVDRSIIP--LFEMHMQ 312
+ + D ++ V+ G + V A LI + + P + + Q
Sbjct: 359 CEL--SRDPNTNPIEKTFVIR--GSEAQVEHAKHLIRVKVGDIPPNTPYTPAGMPQPQPQ 414
Query: 313 MPNPQMDHIXXXXXXXXXXXXXXXXXXXXXHNPQYMPPPRQAESYYPPADLPPPMEKQPH 372
PQM + PQ Q + P LP M +
Sbjct: 415 QQPPQMVQVQPNLQGQQPNMQMWAGQPLV-QQPQQPHHIHQQPAQLHPVQLPQVMAPPGY 473
Query: 373 QGISAYGREA---PVNV---HGSSNAQSTPSMITQ----VTQQM-QIPLSYADAVIGTAG 421
+AY +A +V H AQ Q V+Q M Q P A A + T G
Sbjct: 474 PTQAAYPPQAVYQQTSVAAWHPMQQAQPQQQQYVQAAIPVSQAMYQPPQQPAPAPVET-G 532
Query: 422 ASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAAPSQAQMG 481
S+ Y + + A QE + +M + ++ QT QQ+ Q A A Q G
Sbjct: 533 LSL-YAQYAMQAAAQQQEQQRA--QMAAQQEAKLAKQQTTQQVAQKDTASA----QNSTG 585
Query: 482 ASADQGYNPYASMY 495
SA G Y++ +
Sbjct: 586 GSAKDGDADYSAQW 599
Score = 120 (47.3 bits), Expect = 0.00060, P = 0.00060
Identities = 36/167 (21%), Positives = 79/167 (47%)
Query: 125 GWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKIL-DGPPGTTERAVMISAKE 183
G P + + +PA K G+IIG+ GE ++K+ T +++L D T + + I+
Sbjct: 152 GDPSKITIEIPIPANKCGAIIGKGGEQMRKLRSWTNCNVQLLQDNNIADTVKPLKITGDP 211
Query: 184 EPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGT 243
+ + +L + D + + A +G +S ++ VP G+++G QG
Sbjct: 212 KQVEQCRLLVADILACN----DDTPASAMMAGNGPVATMSLQVKVPRCTVGAIMGLQGKN 267
Query: 244 VKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELI 290
+K + + + ++ L +D + +R + ++G+ + V+ +LI
Sbjct: 268 IKKLSDETGTKIQFLPDDDPKLM----ERSLAIIGNKNKVYVCAQLI 310
Score = 110 (43.8 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 39/169 (23%), Positives = 81/169 (47%)
Query: 136 VPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMI-SAKEEPESSLPPAMD 194
VP Q VG +IGR G ++ I +++ R+++ P T R V I E E + +
Sbjct: 61 VPEQCVGLVIGRNGAEVQAISQKSGCRVQVTVQPSSTGFRLVEIYGIPENIERAKAYISE 120
Query: 195 GLLRVHKR---IVDGLDSDSSH---AP---SGTGGKVSTKLLVPASQAGSLIGKQGGTVK 245
+ R ++ + + +H +P G K++ ++ +PA++ G++IGK G ++
Sbjct: 121 VVTRGTRQPGPLCQPVVHVQTHGIKSPVVDQGDPSKITIEIPIPANKCGAIIGKGGEQMR 180
Query: 246 SIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHL 294
++ +NC V++L ++ + +++ GD V + L+ L
Sbjct: 181 KLRSWTNCNVQLLQDNNIA----DTVKPLKITGDPKQVEQCRLLVADIL 225
Score = 53 (23.7 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 19/82 (23%), Positives = 40/82 (48%)
Query: 399 ITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVT-IQETRGVPGEMTVEISGTASQ 457
+ ++ Q+++P A++G G +I + +G + + + E ++ I G ++
Sbjct: 243 VATMSLQVKVPRCTVGAIMGLQGKNIKKLSDETGTKIQFLPDDDPKLMERSLAIIGNKNK 302
Query: 458 VQTAQQLIQNFM---AEAA-AP 475
V QLI+ + +EAA AP
Sbjct: 303 VYVCAQLIKAIVEANSEAANAP 324
>UNIPROTKB|F1MBI6 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:DAAA02052552
EMBL:DAAA02052553 IPI:IPI01028075 Ensembl:ENSBTAT00000031237
Uniprot:F1MBI6
Length = 389
Score = 107 (42.7 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 41/122 (33%), Positives = 60/122 (49%)
Query: 172 TTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDGLDSDSSHAPSGTGG--KVS-TKLLV 228
TTER +I E +++ + +R + V + S P T ++ K++V
Sbjct: 1 TTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIV 60
Query: 229 PASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAME 288
P S AG +IGK G TVK+I E S V++ D LQ+ RVV V G+ KA+E
Sbjct: 61 PNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPD--GINLQE-RVVTVSGEPEQNRKAVE 117
Query: 289 LI 290
LI
Sbjct: 118 LI 119
Score = 72 (30.4 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG--VPGEMT--VEISGTASQVQT 460
++ +P + A++G G ++ + +GA + I + +G VPG V I+GT + Q
Sbjct: 307 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISK-KGEFVPGTRNRKVTITGTPAATQA 365
Query: 461 AQQLI 465
AQ LI
Sbjct: 366 AQYLI 370
>UNIPROTKB|F8VYI3 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 IPI:IPI01017995
ProteinModelPortal:F8VYI3 SMR:F8VYI3 PRIDE:F8VYI3
Ensembl:ENST00000483536 ArrayExpress:F8VYI3 Bgee:F8VYI3
Uniprot:F8VYI3
Length = 121
Score = 109 (43.4 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 93 VPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGWPGESVFRMLVPAQKVGSIIGRKGEFI 152
VP D+ P DS+ K+ E GST++ G G+ ++L+P+ GSIIG+ G+ I
Sbjct: 16 VPIDLDPPDSR---KRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTI 72
Query: 153 KKIVEETRARIKI 165
++ +ET A IK+
Sbjct: 73 VQLQKETGATIKL 85
>DICTYBASE|DDB_G0293274 [details] [associations]
symbol:DDB_G0293274 "B-box zinc finger-containing
protein/FNIP repeat-containing protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000315 Pfam:PF00643 SMART:SM00336
dictyBase:DDB_G0293274 GO:GO:0008270 GO:GO:0005622
EMBL:AAFI02000200 InterPro:IPR008615 Pfam:PF05725
RefSeq:XP_629256.1 EnsemblProtists:DDB0215559 GeneID:8629138
KEGG:ddi:DDB_G0293274 eggNOG:NOG323866 InParanoid:Q54C10
Uniprot:Q54C10
Length = 540
Score = 124 (48.7 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 60 KEQVTEDQLTEDQVPEDHVPEDQVPEDHVPEDQVPEDIVPEDSQLQEK 107
+EQ+ +DQ +DQ P+D P+DQ P+D P+DQ P+D P+D Q++
Sbjct: 214 QEQIPQDQPPQDQPPQDQPPQDQPPQDQPPQDQPPQDQPPQDQPPQDQ 261
Score = 117 (46.2 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 19/48 (39%), Positives = 33/48 (68%)
Query: 60 KEQVTEDQLTEDQVPEDHVPEDQVPEDHVPEDQVPEDIVPEDSQLQEK 107
++Q ++Q+ +DQ P+D P+DQ P+D P+DQ P+D P+D Q++
Sbjct: 209 QQQQQQEQIPQDQPPQDQPPQDQPPQDQPPQDQPPQDQPPQDQPPQDQ 256
Score = 115 (45.5 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 60 KEQVTEDQLTEDQVPEDHVPEDQVPEDHVPEDQVPEDIVPEDSQLQEK 107
+EQ + Q ++Q+P+D P+DQ P+D P+DQ P+D P+D Q++
Sbjct: 204 QEQEQQQQQQQEQIPQDQPPQDQPPQDQPPQDQPPQDQPPQDQPPQDQ 251
Score = 60 (26.2 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 345 PQYMPPPRQAESYYPPADLPP---PMEKQPHQ 373
PQ PP Q PP D PP P + QP Q
Sbjct: 248 PQDQPPQDQPPQDQPPQDQPPQDQPPQPQPQQ 279
Score = 59 (25.8 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 345 PQYMPPPRQAESYYPPADLPP---PMEKQPHQ 373
PQ PP Q PP D PP P + QP +
Sbjct: 253 PQDQPPQDQPPQDQPPQDQPPQPQPQQDQPQE 284
Score = 37 (18.1 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 345 PQYMPPPRQAESYYPPADLPP 365
PQ PP Q + P D P
Sbjct: 268 PQDQPPQPQPQQDQPQEDQQP 288
>UNIPROTKB|G8JLA5 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 ProteinModelPortal:G8JLA5 SMR:G8JLA5
Ensembl:ENST00000347476 Bgee:G8JLA5 Uniprot:G8JLA5
Length = 109
Score = 104 (41.7 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 29/66 (43%), Positives = 39/66 (59%)
Query: 225 KLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVH 284
K++VP S AG +IGK G TVK++ E S V++ D LQ+ RVV V G+
Sbjct: 29 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPD--GINLQE-RVVTVSGEPEQNR 85
Query: 285 KAMELI 290
KA+ELI
Sbjct: 86 KAVELI 91
>RGD|1311196 [details] [associations]
symbol:Tdrkh "tudor and KH domain containing" species:10116
"Rattus norvegicus" [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1311196 GO:GO:0003723 EMBL:CH474015 eggNOG:NOG262512
HOGENOM:HOG000037932 OrthoDB:EOG4T4CV4 UniGene:Rn.98848
EMBL:BC059161 IPI:IPI00370637 SMR:Q6PCT7 UCSC:RGD:1311196
HOVERGEN:HBG062756 InParanoid:Q6PCT7 Genevestigator:Q6PCT7
Uniprot:Q6PCT7
Length = 296
Score = 90 (36.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI-QETRG-VPGEMTVEISGTASQ 457
T V +Q+ +P +IG G +I I ++SGA +T +E+ G + ++ISGT +
Sbjct: 123 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKE 182
Query: 458 VQTAQQLIQNFMAE 471
V A+ LI ++E
Sbjct: 183 VAAAKHLILEKVSE 196
Score = 74 (31.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 134 MLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMIS 180
M VP + V IIGR+G IK++ ++T ARI + D ER ++IS
Sbjct: 57 MRVPQEAVKLIIGRQGANIKQLRKQTGARIDV-DTEDVGDERVLLIS 102
>UNIPROTKB|H3BSS4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 PRIDE:H3BSS4 Ensembl:ENST00000547859
Uniprot:H3BSS4
Length = 184
Score = 114 (45.2 bits), Expect = 0.00016, P = 0.00016
Identities = 35/123 (28%), Positives = 56/123 (45%)
Query: 344 NPQYMPPPRQAESYYPPADLPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVT 403
NP PP +A + +P P + HQ ++ P+ HG++ + Q T
Sbjct: 50 NPDLEGPPLEAYTIQGQYAIPQPDLTKLHQ-LAMQQSHFPMT-HGNTGFSAGLDASAQTT 107
Query: 404 Q-QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQ 462
++ IP +IG GA I+ IR+ SGA + I + V I+G+A+ + AQ
Sbjct: 108 SHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQ 167
Query: 463 QLI 465
LI
Sbjct: 168 YLI 170
>UNIPROTKB|C9J5V4 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00946082 ProteinModelPortal:C9J5V4 SMR:C9J5V4 STRING:C9J5V4
Ensembl:ENST00000497653 HOGENOM:HOG000213901 ArrayExpress:C9J5V4
Bgee:C9J5V4 Uniprot:C9J5V4
Length = 107
Score = 100 (40.3 bits), Expect = 0.00018, P = 0.00018
Identities = 33/91 (36%), Positives = 45/91 (49%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPA 192
RML+ ++VGSIIG+KGE +K+I E++ ARI I +G ER I+
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGSTA-------- 70
Query: 193 MDGLLRVHKRIVDGLDSDSSHAPSGTGGKVS 223
+ I LD D AP+ GG VS
Sbjct: 71 --AVFHAVSMIAFKLDEDLCAAPAN-GGNVS 98
>UNIPROTKB|F8VTZ0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01020805
ProteinModelPortal:F8VTZ0 SMR:F8VTZ0 Ensembl:ENST00000550192
ArrayExpress:F8VTZ0 Bgee:F8VTZ0 Uniprot:F8VTZ0
Length = 64
Score = 100 (40.3 bits), Expect = 0.00018, P = 0.00018
Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMIS 180
R+L+ ++VGSIIG+KGE +KK+ EE+ ARI I +G ER + ++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA 62
>UNIPROTKB|H3BND9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 GO:GO:0003723
EMBL:AC068889 EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2
Ensembl:ENST00000550585 Uniprot:H3BND9
Length = 112
Score = 100 (40.3 bits), Expect = 0.00018, P = 0.00018
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 194 DGLLRVHKRIVDGLDSD-SSHAPSGTGGK---VSTKLLVPASQAGSLIGKQGGTVKSIQE 249
+ + + I+D L+ D SS + T V+ +L+VPASQ GSLIGK G +K I+E
Sbjct: 6 NAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 65
Query: 250 A 250
A
Sbjct: 66 A 66
>UNIPROTKB|E1B8C6 [details] [associations]
symbol:E1B8C6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:DAAA02008155
IPI:IPI00701183 Ensembl:ENSBTAT00000038517 OMA:YLINARE
Uniprot:E1B8C6
Length = 116
Score = 99 (39.9 bits), Expect = 0.00023, P = 0.00023
Identities = 30/85 (35%), Positives = 43/85 (50%)
Query: 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQE-TRGVPGEMTVEISGTASQV 458
TQ T ++ IP + +IG GA+I+ IR+ S A + I G G V I+G+A+ +
Sbjct: 38 TQTTHELTIPNNLIGCIIGRQGANINEIRQMSRAQIKIANPVEGSSGRQ-VTITGSAASI 96
Query: 459 QTAQQLIQNFMAEAAAPSQAQMGAS 483
AQ LI A S+ MG S
Sbjct: 97 SLAQYLIN-----ARLSSEKGMGCS 116
>UNIPROTKB|C9IZV9 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00946687 ProteinModelPortal:C9IZV9 SMR:C9IZV9 STRING:C9IZV9
Ensembl:ENST00000483411 ArrayExpress:C9IZV9 Bgee:C9IZV9
Uniprot:C9IZV9
Length = 75
Score = 99 (39.9 bits), Expect = 0.00023, P = 0.00023
Identities = 20/36 (55%), Positives = 29/36 (80%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDG 168
RML+ ++VGSIIG+KGE +K+I E++ ARI I +G
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG 56
>UNIPROTKB|C9J7A9 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00945892 ProteinModelPortal:C9J7A9 SMR:C9J7A9 STRING:C9J7A9
Ensembl:ENST00000490063 ArrayExpress:C9J7A9 Bgee:C9J7A9
Uniprot:C9J7A9
Length = 86
Score = 99 (39.9 bits), Expect = 0.00023, P = 0.00023
Identities = 20/36 (55%), Positives = 29/36 (80%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDG 168
RML+ ++VGSIIG+KGE +K+I E++ ARI I +G
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG 56
>UNIPROTKB|C9JSA6 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00945164 ProteinModelPortal:C9JSA6 SMR:C9JSA6 STRING:C9JSA6
Ensembl:ENST00000489595 ArrayExpress:C9JSA6 Bgee:C9JSA6
Uniprot:C9JSA6
Length = 92
Score = 99 (39.9 bits), Expect = 0.00023, P = 0.00023
Identities = 20/36 (55%), Positives = 29/36 (80%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDG 168
RML+ ++VGSIIG+KGE +K+I E++ ARI I +G
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG 56
>UNIPROTKB|I3LP40 [details] [associations]
symbol:TDRKH "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 InterPro:IPR002999
GO:GO:0005739 GO:GO:0003723 Pfam:PF00567 PROSITE:PS50304
GeneTree:ENSGT00530000063224 OMA:FHADEYL EMBL:FP340554
Ensembl:ENSSSCT00000032144 Uniprot:I3LP40
Length = 558
Score = 93 (37.8 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI-QETRG-VPGEMTVEISGTASQ 457
T V++Q+ +P +IG G +I I ++SGA +T +E+ G + ++ISGT +
Sbjct: 123 TPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKE 182
Query: 458 VQTAQQLIQNFMAE 471
V A+ LI ++E
Sbjct: 183 VAAAKHLILEKVSE 196
Score = 74 (31.1 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 134 MLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMIS 180
M VP + V IIGR+G IK++ ++T ARI + D ER ++IS
Sbjct: 57 MRVPQESVKLIIGRQGANIKQLRKQTGARIDV-DTEDIGDERVLLIS 102
>UNIPROTKB|Q9Y2W6 [details] [associations]
symbol:TDRKH "Tudor and KH domain-containing protein"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
InterPro:IPR002999 GO:GO:0005739 GO:GO:0003723 Pfam:PF00567
SMART:SM00333 PROSITE:PS50304 EMBL:CH471121 EMBL:AL589765
EMBL:AF119121 EMBL:AF227192 EMBL:BC022467 IPI:IPI00009982
IPI:IPI01013931 RefSeq:NP_001077432.1 RefSeq:NP_001077433.1
RefSeq:NP_001077434.1 RefSeq:NP_006853.2 UniGene:Hs.144439 PDB:2DIQ
PDB:3FDR PDBsum:2DIQ PDBsum:3FDR ProteinModelPortal:Q9Y2W6
SMR:Q9Y2W6 DIP:DIP-59459N STRING:Q9Y2W6 PhosphoSite:Q9Y2W6
DMDM:39932455 PaxDb:Q9Y2W6 PRIDE:Q9Y2W6 DNASU:11022
Ensembl:ENST00000368822 Ensembl:ENST00000368824
Ensembl:ENST00000368825 Ensembl:ENST00000368827
Ensembl:ENST00000458431 GeneID:11022 KEGG:hsa:11022 UCSC:uc001eyy.2
CTD:11022 GeneCards:GC01M151745 HGNC:HGNC:11713 HPA:HPA016419
HPA:HPA019625 MIM:609501 neXtProt:NX_Q9Y2W6 PharmGKB:PA36431
eggNOG:NOG262512 HOGENOM:HOG000037932 HOVERGEN:HBG055309
InParanoid:Q9Y2W6 OMA:FHADEYL OrthoDB:EOG4T4CV4 PhylomeDB:Q9Y2W6
EvolutionaryTrace:Q9Y2W6 GenomeRNAi:11022 NextBio:41878
ArrayExpress:Q9Y2W6 Bgee:Q9Y2W6 CleanEx:HS_TDRKH
Genevestigator:Q9Y2W6 GermOnline:ENSG00000182134 Uniprot:Q9Y2W6
Length = 561
Score = 93 (37.8 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI-QETRG-VPGEMTVEISGTASQ 457
T V++Q+ +P +IG G +I I ++SGA +T +E+ G + ++ISGT +
Sbjct: 123 TPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKE 182
Query: 458 VQTAQQLIQNFMAE 471
V A+ LI ++E
Sbjct: 183 VAAAKHLILEKVSE 196
Score = 74 (31.1 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 134 MLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMIS 180
M VP + V IIGR+G IK++ ++T ARI + D ER ++IS
Sbjct: 57 MRVPQEAVKLIIGRQGANIKQLRKQTGARIDV-DTEDVGDERVLLIS 102
>UNIPROTKB|E2RBJ9 [details] [associations]
symbol:TDRKH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
InterPro:IPR002999 GO:GO:0005739 GO:GO:0003723 Pfam:PF00567
SMART:SM00333 PROSITE:PS50304 GeneTree:ENSGT00530000063224
CTD:11022 EMBL:AAEX03011058 EMBL:AAEX03011059 RefSeq:XP_851426.2
Ensembl:ENSCAFT00000020405 GeneID:609125 KEGG:cfa:609125
Uniprot:E2RBJ9
Length = 563
Score = 93 (37.8 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI-QETRG-VPGEMTVEISGTASQ 457
T V++Q+ +P +IG G +I I ++SGA +T +E+ G + ++ISGT +
Sbjct: 123 TPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKE 182
Query: 458 VQTAQQLIQNFMAE 471
V A+ LI ++E
Sbjct: 183 VAAAKHLILEKVSE 196
Score = 74 (31.1 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 134 MLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMIS 180
M VP + V IIGR+G IK++ ++T ARI + D ER ++IS
Sbjct: 57 MRVPQEAVKLIIGRQGTNIKQLRKQTGARIDV-DTEDVGDERVLLIS 102
>UNIPROTKB|J9P0T0 [details] [associations]
symbol:TDRKH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 InterPro:IPR002999 Pfam:PF01281 GO:GO:0003723
Pfam:PF00567 SMART:SM00333 PROSITE:PS50304 Gene3D:3.40.5.10
InterPro:IPR009027 InterPro:IPR020070 SUPFAM:SSF55658
GeneTree:ENSGT00530000063224 EMBL:AAEX03011058 EMBL:AAEX03011059
Ensembl:ENSCAFT00000048274 Uniprot:J9P0T0
Length = 605
Score = 93 (37.8 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI-QETRG-VPGEMTVEISGTASQ 457
T V++Q+ +P +IG G +I I ++SGA +T +E+ G + ++ISGT +
Sbjct: 123 TPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKE 182
Query: 458 VQTAQQLIQNFMAE 471
V A+ LI ++E
Sbjct: 183 VAAAKHLILEKVSE 196
Score = 74 (31.1 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 134 MLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMIS 180
M VP + V IIGR+G IK++ ++T ARI + D ER ++IS
Sbjct: 57 MRVPQEAVKLIIGRQGTNIKQLRKQTGARIDV-DTEDVGDERVLLIS 102
>MGI|MGI:2681847 [details] [associations]
symbol:Mex3d "mex3 homolog D (C. elegans)" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006402
"mRNA catabolic process" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0042981 "regulation of apoptotic process"
evidence=NAS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0050779 "RNA destabilization" evidence=ISO] [GO:0061157 "mRNA
destabilization" evidence=NAS] InterPro:IPR001841
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
PROSITE:PS50089 SMART:SM00184 SMART:SM00322 MGI:MGI:2681847
Prosite:PS00518 GO:GO:0005634 GO:GO:0048471 GO:GO:0042981
GO:GO:0046872 GO:GO:0008270 GO:GO:0017091 Gene3D:3.30.40.10
InterPro:IPR013083 HSSP:Q00341 GO:GO:0061157 HOVERGEN:HBG071698
KO:K15686 eggNOG:NOG260228 HOGENOM:HOG000236282 CTD:399664
EMBL:CAAA01108096 EMBL:AC152062 EMBL:AK149801 IPI:IPI00831125
IPI:IPI00957037 RefSeq:NP_941017.2 UniGene:Mm.268389
ProteinModelPortal:Q3UE17 SMR:Q3UE17 PhosphoSite:Q3UE17
PaxDb:Q3UE17 PRIDE:Q3UE17 GeneID:237400 KEGG:mmu:237400
InParanoid:Q3UE17 NextBio:383340 CleanEx:MM_MEX3D
Genevestigator:Q3UE17 Uniprot:Q3UE17
Length = 643
Score = 121 (47.7 bits), Expect = 0.00047, P = 0.00047
Identities = 47/166 (28%), Positives = 76/166 (45%)
Query: 136 VPAQK-VGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMI--SAKEEPESSLPPA 192
VP+ + V I+GR+G IK + +T IK P E V I KE+ E +
Sbjct: 166 VPSSEHVAEIVGRQGCKIKALRAKTNTYIKT----PVRGEEPVFIVTGRKEDVEMAKREI 221
Query: 193 MDG----LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQ 248
+ L+R + GL S ++ P G+ + ++ VP G ++G +G T+K IQ
Sbjct: 222 LSAEHFSLIRATRSKAGGL-SGATPGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQ 280
Query: 249 EASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHL 294
+ ++ + G + PVFA V G V +A E I +H+
Sbjct: 281 QRTHTYIVTPGRDKEPVFA--------VTGMPENVDRAREEIEAHI 318
>UNIPROTKB|F1MUI1 [details] [associations]
symbol:TDRKH "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 InterPro:IPR002999
GO:GO:0005739 GO:GO:0003723 Pfam:PF00567 PROSITE:PS50304
GeneTree:ENSGT00530000063224 OMA:FHADEYL EMBL:DAAA02007247
IPI:IPI00703713 Ensembl:ENSBTAT00000028777 Uniprot:F1MUI1
Length = 566
Score = 93 (37.8 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI-QETRG-VPGEMTVEISGTASQ 457
T V++Q+ +P +IG G +I I ++SGA +T +E+ G + ++ISGT +
Sbjct: 123 TPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKE 182
Query: 458 VQTAQQLIQNFMAE 471
V A+ LI ++E
Sbjct: 183 VAAAKHLILEKVSE 196
Score = 72 (30.4 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 134 MLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMIS 180
M VP + V IIGR+G IK++ ++T ARI + D ER ++IS
Sbjct: 57 MRVPQEAVKLIIGRQGANIKQLRKKTGARIDV-DTEDIGDERVLLIS 102
>SGD|S000000128 [details] [associations]
symbol:HEK2 "RNA binding protein involved in asymmetric
localization of ASH1 mRNA" species:4932 "Saccharomyces cerevisiae"
[GO:0008298 "intracellular mRNA localization" evidence=IMP;IPI]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0007004 "telomere maintenance via
telomerase" evidence=IMP;IPI] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000784 "nuclear chromosome, telomeric region"
evidence=IDA] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IGI;IMP] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 SGD:S000000128 GO:GO:0006417
GO:GO:0003729 GO:GO:0016568 EMBL:BK006936 GO:GO:0048255 EMBL:X77291
GO:GO:0000932 GO:GO:0008298 GO:GO:0051028 GO:GO:0000784
GO:GO:0007004 EMBL:Z35793 EMBL:AY692814 PIR:S45766
RefSeq:NP_009521.1 ProteinModelPortal:P38199 SMR:P38199
DIP:DIP-3934N IntAct:P38199 MINT:MINT-506819 STRING:P38199
PaxDb:P38199 PeptideAtlas:P38199 EnsemblFungi:YBL032W GeneID:852248
KEGG:sce:YBL032W CYGD:YBL032w eggNOG:NOG294694 OMA:NSHISSI
OrthoDB:EOG4Z65XM NextBio:970814 Genevestigator:P38199
GermOnline:YBL032W Uniprot:P38199
Length = 381
Score = 86 (35.3 bits), Expect = 0.00058, Sum P(3) = 0.00058
Identities = 26/87 (29%), Positives = 46/87 (52%)
Query: 225 KLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAED-LPVFALQDDRVVEVVGDASGV 283
+L+V S S+IGK G T+KS+ V+++ ++D LP D+R++E+ G +
Sbjct: 160 RLIVANSHISSIIGKAGATIKSLINKHG--VKIVASKDFLPA---SDERIIEIQGFPGSI 214
Query: 284 HKAM----ELIGSHLR-KFLVDRSIIP 305
+ E+I S + +F +RS P
Sbjct: 215 TNVLIEISEIILSDVDVRFSTERSYFP 241
Score = 62 (26.9 bits), Expect = 0.00058, Sum P(3) = 0.00058
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 133 RMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTER 175
R+L+ ++ IIG KG I +I +I I + PG ++R
Sbjct: 47 RLLLSLKEAAKIIGTKGSTISRIRAANAVKIGISEKVPGCSDR 89
Score = 50 (22.7 bits), Expect = 0.00058, Sum P(3) = 0.00058
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 389 SSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQ 438
SS ++PS + +++IP Y A+IG I ++ + + ++
Sbjct: 246 SSGEPTSPSTSSNTRIELKIPELYVGAIIGRGMNRIKNLKTFTKTNIVVE 295
>MGI|MGI:1919884 [details] [associations]
symbol:Tdrkh "tudor and KH domain containing protein"
species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 InterPro:IPR002999 MGI:MGI:1919884 GO:GO:0005739
GO:GO:0003723 Pfam:PF00567 SMART:SM00333 PROSITE:PS50304
GeneTree:ENSGT00530000063224 CTD:11022 eggNOG:NOG262512
HOGENOM:HOG000037932 HOVERGEN:HBG055309 OMA:FHADEYL
OrthoDB:EOG4T4CV4 EMBL:BC049363 IPI:IPI00330464 RefSeq:NP_082583.1
UniGene:Mm.331198 UniGene:Mm.470795 PDB:1WE8 PDBsum:1WE8
ProteinModelPortal:Q80VL1 SMR:Q80VL1 STRING:Q80VL1
PhosphoSite:Q80VL1 PaxDb:Q80VL1 PRIDE:Q80VL1
Ensembl:ENSMUST00000045245 Ensembl:ENSMUST00000166032 GeneID:72634
KEGG:mmu:72634 UCSC:uc008qge.1 InParanoid:Q80VL1
EvolutionaryTrace:Q80VL1 NextBio:336631 Bgee:Q80VL1
CleanEx:MM_TDRKH Genevestigator:Q80VL1
GermOnline:ENSMUSG00000041912 Uniprot:Q80VL1
Length = 560
Score = 90 (36.7 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI-QETRG-VPGEMTVEISGTASQ 457
T V +Q+ +P +IG G +I I ++SGA +T +E+ G + ++ISGT +
Sbjct: 123 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKE 182
Query: 458 VQTAQQLIQNFMAE 471
V A+ LI ++E
Sbjct: 183 VAAAKHLILEKVSE 196
Score = 74 (31.1 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 134 MLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMIS 180
M VP + V IIGR+G IK++ ++T ARI + D ER ++IS
Sbjct: 57 MRVPQEAVKLIIGRQGANIKQLRKQTGARIDV-DTEDVGDERVLLIS 102
>UNIPROTKB|G3V8T7 [details] [associations]
symbol:Tdrkh "RCG51933, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
InterPro:IPR002999 RGD:1311196 GO:GO:0003723 Pfam:PF00567
SMART:SM00333 PROSITE:PS50304 EMBL:CH474015
GeneTree:ENSGT00530000063224 CTD:11022 EMBL:AC133978
RefSeq:NP_001014060.2 UniGene:Rn.98848 PRIDE:G3V8T7
Ensembl:ENSRNOT00000028299 GeneID:310652 KEGG:rno:310652
NextBio:662332 Uniprot:G3V8T7
Length = 560
Score = 90 (36.7 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTI-QETRG-VPGEMTVEISGTASQ 457
T V +Q+ +P +IG G +I I ++SGA +T +E+ G + ++ISGT +
Sbjct: 123 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKE 182
Query: 458 VQTAQQLIQNFMAE 471
V A+ LI ++E
Sbjct: 183 VAAAKHLILEKVSE 196
Score = 74 (31.1 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 134 MLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMIS 180
M VP + V IIGR+G IK++ ++T ARI + D ER ++IS
Sbjct: 57 MRVPQEAVKLIIGRQGANIKQLRKQTGARIDV-DTEDVGDERVLLIS 102
>UNIPROTKB|F1M336 [details] [associations]
symbol:Mex3d "Protein Mex3d" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
PROSITE:PS50089 SMART:SM00184 SMART:SM00322 RGD:1310576
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 Gene3D:3.30.40.10
InterPro:IPR013083 GeneTree:ENSGT00390000018714 IPI:IPI00948007
Ensembl:ENSRNOT00000065974 ArrayExpress:F1M336 Uniprot:F1M336
Length = 618
Score = 119 (46.9 bits), Expect = 0.00073, P = 0.00073
Identities = 47/167 (28%), Positives = 76/167 (45%)
Query: 136 VPAQK-VGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMI--SAKEEPESSLPPA 192
VP+ + V I+GR+G IK + +T IK P E V I KE+ E +
Sbjct: 139 VPSSEHVAEIVGRQGCKIKALRAKTNTYIKT----PVRGEEPVFIVTGRKEDVEMAKREI 194
Query: 193 MDG-----LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSI 247
+ L+R + GL S ++ P G+ + ++ VP G ++G +G T+K I
Sbjct: 195 LSAAEHFSLIRATRSKAGGL-SGATPGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRI 253
Query: 248 QEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHL 294
Q+ ++ + G + PVFA V G V +A E I +H+
Sbjct: 254 QQRTHTYIVTPGRDKEPVFA--------VTGMPENVDRAREEIEAHI 292
>RGD|1310576 [details] [associations]
symbol:Mex3d "mex-3 homolog D (C. elegans)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
InterPro:IPR001841 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50089 SMART:SM00184
SMART:SM00322 RGD:1310576 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
Gene3D:3.30.40.10 InterPro:IPR013083 GeneTree:ENSGT00390000018714
IPI:IPI00369458 Ensembl:ENSRNOT00000040170 ArrayExpress:F1M5V7
Uniprot:F1M5V7
Length = 692
Score = 119 (46.9 bits), Expect = 0.00085, P = 0.00085
Identities = 47/167 (28%), Positives = 76/167 (45%)
Query: 136 VPAQK-VGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMI--SAKEEPESSLPPA 192
VP+ + V I+GR+G IK + +T IK P E V I KE+ E +
Sbjct: 213 VPSSEHVAEIVGRQGCKIKALRAKTNTYIKT----PVRGEEPVFIVTGRKEDVEMAKREI 268
Query: 193 MDG-----LLRVHKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSI 247
+ L+R + GL S ++ P G+ + ++ VP G ++G +G T+K I
Sbjct: 269 LSAAEHFSLIRATRSKAGGL-SGATPGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRI 327
Query: 248 QEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHL 294
Q+ ++ + G + PVFA V G V +A E I +H+
Sbjct: 328 QQRTHTYIVTPGRDKEPVFA--------VTGMPENVDRAREEIEAHI 366
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.310 0.129 0.367 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 521 457 0.00094 118 3 11 23 0.50 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 229
No. of states in DFA: 594 (63 KB)
Total size of DFA: 236 KB (2126 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 49.64u 0.17s 49.81t Elapsed: 00:00:03
Total cpu time: 49.70u 0.18s 49.88t Elapsed: 00:00:03
Start: Tue May 21 08:12:16 2013 End: Tue May 21 08:12:19 2013
WARNINGS ISSUED: 2