Query 009973
Match_columns 521
No_of_seqs 302 out of 1877
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 17:04:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jvz_A KH type-splicing, FAR u 99.9 7.6E-25 2.6E-29 202.3 16.2 161 222-473 2-162 (164)
2 3krm_A Insulin-like growth fac 99.9 1.3E-24 4.5E-29 200.7 17.4 155 222-474 3-159 (163)
3 3krm_A Insulin-like growth fac 99.9 2.1E-24 7E-29 199.4 15.3 154 130-297 3-157 (163)
4 2anr_A Neuro-oncological ventr 99.9 6.5E-25 2.2E-29 205.7 11.8 162 127-297 3-176 (178)
5 2anr_A Neuro-oncological ventr 99.9 1.8E-24 6.2E-29 202.7 13.8 172 219-473 3-177 (178)
6 2jzx_A Poly(RC)-binding protei 99.9 2E-24 6.8E-29 198.9 12.3 156 129-296 4-159 (160)
7 1j4w_A FUSE binding protein; s 99.9 4.3E-24 1.5E-28 199.5 14.6 170 221-469 2-174 (174)
8 2jzx_A Poly(RC)-binding protei 99.9 6.4E-24 2.2E-28 195.5 13.7 156 220-471 3-159 (160)
9 1j4w_A FUSE binding protein; s 99.9 5.1E-24 1.7E-28 199.0 12.7 161 129-294 2-174 (174)
10 2jvz_A KH type-splicing, FAR u 99.9 4.9E-23 1.7E-27 190.1 15.3 156 130-297 2-161 (164)
11 3n89_A Defective in GERM LINE 99.9 9.9E-23 3.4E-27 208.8 10.8 221 127-470 27-260 (376)
12 2qnd_A FMR1 protein; KH domain 99.8 3.3E-18 1.1E-22 154.5 12.2 134 221-471 3-142 (144)
13 2qnd_A FMR1 protein; KH domain 99.7 1.1E-17 3.8E-22 151.0 12.2 136 130-296 4-142 (144)
14 2e3u_A PH-DIM2P, hypothetical 99.7 3.8E-16 1.3E-20 150.0 12.9 144 221-472 33-192 (219)
15 2e3u_A PH-DIM2P, hypothetical 99.6 3E-16 1E-20 150.7 10.1 145 130-296 34-191 (219)
16 1x4n_A FAR upstream element bi 99.6 4E-15 1.4E-19 124.0 9.7 75 400-474 13-87 (92)
17 1zzk_A Heterogeneous nuclear r 99.6 8.4E-15 2.9E-19 119.4 9.5 74 400-473 5-78 (82)
18 2hh3_A KH-type splicing regula 99.6 4.5E-15 1.5E-19 126.7 7.9 73 403-475 12-84 (106)
19 1wvn_A Poly(RC)-binding protei 99.6 4.9E-15 1.7E-19 120.7 7.1 73 400-472 4-76 (82)
20 2hh2_A KH-type splicing regula 99.6 4.7E-15 1.6E-19 127.0 7.2 71 403-473 8-81 (107)
21 1tua_A Hypothetical protein AP 99.5 1.3E-14 4.4E-19 136.0 10.5 141 223-471 5-160 (191)
22 2p2r_A Poly(RC)-binding protei 99.5 6.1E-15 2.1E-19 118.4 6.5 73 400-472 3-75 (76)
23 1tua_A Hypothetical protein AP 99.5 1.7E-14 5.8E-19 135.2 8.5 139 131-296 5-160 (191)
24 1j5k_A Heterogeneous nuclear r 99.5 1.8E-14 6.1E-19 119.2 6.4 73 400-472 12-84 (89)
25 1dtj_A RNA-binding neurooncolo 99.5 3.2E-14 1.1E-18 114.1 7.4 71 401-471 2-75 (76)
26 2axy_A Poly(RC)-binding protei 99.5 2.5E-14 8.7E-19 113.8 6.5 69 401-471 4-72 (73)
27 1x4m_A FAR upstream element bi 99.5 1.1E-13 3.6E-18 115.7 8.1 74 400-473 13-88 (94)
28 1ec6_A RNA-binding protein NOV 99.5 7.1E-14 2.4E-18 115.1 6.4 72 402-473 3-77 (87)
29 2dgr_A Ring finger and KH doma 99.4 7.5E-14 2.6E-18 113.7 5.9 70 400-472 8-77 (83)
30 1we8_A Tudor and KH domain con 99.4 3E-13 1E-17 115.2 9.7 74 400-473 13-88 (104)
31 2opv_A KHSRP protein; KH domai 99.4 3.6E-13 1.2E-17 110.4 8.6 70 401-470 13-84 (85)
32 1zzk_A Heterogeneous nuclear r 99.4 6.9E-13 2.4E-17 107.9 9.7 74 219-297 4-77 (82)
33 2axy_A Poly(RC)-binding protei 99.4 3.1E-13 1.1E-17 107.5 7.2 70 220-296 3-72 (73)
34 1dtj_A RNA-binding neurooncolo 99.4 4.6E-13 1.6E-17 107.3 8.0 74 221-296 2-75 (76)
35 2p2r_A Poly(RC)-binding protei 99.4 4.4E-13 1.5E-17 107.5 7.2 72 220-296 3-74 (76)
36 1wvn_A Poly(RC)-binding protei 99.4 6.2E-13 2.1E-17 108.2 7.9 73 220-297 4-76 (82)
37 1ec6_A RNA-binding protein NOV 99.3 1.2E-12 4.1E-17 107.7 7.3 74 222-297 3-76 (87)
38 2cte_A Vigilin; K homology typ 99.3 1.6E-12 5.5E-17 108.5 8.0 75 399-475 14-88 (94)
39 1j5k_A Heterogeneous nuclear r 99.3 1.2E-12 4.3E-17 108.1 7.2 74 219-297 11-84 (89)
40 2opv_A KHSRP protein; KH domai 99.3 3.3E-12 1.1E-16 104.6 9.5 73 220-295 12-84 (85)
41 2dgr_A Ring finger and KH doma 99.3 1.1E-12 3.7E-17 106.8 6.4 70 219-296 7-76 (83)
42 1x4n_A FAR upstream element bi 99.3 1.9E-12 6.6E-17 107.6 8.0 74 219-297 12-85 (92)
43 2ctm_A Vigilin; K homology typ 99.3 2.8E-12 9.4E-17 107.2 9.0 76 398-474 13-88 (95)
44 2hh2_A KH-type splicing regula 99.3 2.5E-12 8.7E-17 109.9 8.2 72 223-296 8-79 (107)
45 2ctl_A Vigilin; K homology typ 99.3 3.6E-12 1.2E-16 107.0 8.3 74 400-473 15-89 (97)
46 1vig_A Vigilin; RNA-binding pr 99.3 1.8E-12 6.3E-17 102.4 6.1 68 400-469 3-70 (71)
47 1x4m_A FAR upstream element bi 99.3 2.6E-12 8.8E-17 107.3 7.2 75 219-296 12-86 (94)
48 2hh3_A KH-type splicing regula 99.3 4.9E-12 1.7E-16 107.8 8.0 72 221-297 10-81 (106)
49 3n89_A Defective in GERM LINE 99.3 2.9E-12 1E-16 131.3 6.2 204 56-294 43-259 (376)
50 1we8_A Tudor and KH domain con 99.2 1.2E-11 4.1E-16 105.2 8.2 75 220-297 13-87 (104)
51 2ctm_A Vigilin; K homology typ 99.2 1.8E-11 6.2E-16 102.3 7.8 75 219-299 14-88 (95)
52 1vig_A Vigilin; RNA-binding pr 99.2 1.4E-11 4.9E-16 97.3 6.6 68 220-294 3-70 (71)
53 2cte_A Vigilin; K homology typ 99.2 2.3E-11 7.7E-16 101.5 7.3 71 220-297 15-85 (94)
54 2ctk_A Vigilin; K homology typ 99.2 1.8E-11 6E-16 104.1 6.5 71 401-473 16-86 (104)
55 2ctl_A Vigilin; K homology typ 99.2 3.9E-11 1.3E-15 100.6 8.4 72 221-296 16-87 (97)
56 2ctj_A Vigilin; K homology typ 99.1 1.5E-10 5E-15 96.6 8.6 76 397-474 12-88 (95)
57 2ctf_A Vigilin; K homology typ 99.1 8E-11 2.7E-15 99.6 5.6 67 221-297 26-93 (102)
58 2ctf_A Vigilin; K homology typ 99.1 1.6E-10 5.4E-15 97.8 7.3 68 402-474 27-95 (102)
59 2ctk_A Vigilin; K homology typ 99.1 1.7E-10 5.7E-15 98.0 7.1 70 221-297 16-85 (104)
60 2ctj_A Vigilin; K homology typ 99.0 1E-09 3.5E-14 91.5 7.1 72 219-297 14-86 (95)
61 2cpq_A FragIle X mental retard 98.9 2.6E-09 8.8E-14 87.8 5.8 68 400-472 13-82 (91)
62 2cpq_A FragIle X mental retard 98.7 7.5E-09 2.6E-13 85.0 3.7 67 220-296 13-81 (91)
63 1k1g_A SF1-BO isoform; splicin 98.6 7.1E-08 2.4E-12 85.0 7.8 73 399-471 4-99 (131)
64 2yqr_A KIAA0907 protein; struc 98.6 1.9E-07 6.6E-12 80.7 9.0 73 400-472 10-100 (119)
65 1k1g_A SF1-BO isoform; splicin 98.4 7.3E-07 2.5E-11 78.5 8.6 78 220-297 5-100 (131)
66 2yqr_A KIAA0907 protein; struc 98.3 2.4E-06 8.1E-11 73.8 9.2 77 220-296 10-99 (119)
67 2bl5_A MGC83862 protein, quaki 98.0 3.9E-06 1.3E-10 74.4 5.3 70 402-471 2-101 (140)
68 2bl5_A MGC83862 protein, quaki 97.9 1.6E-05 5.3E-10 70.5 6.4 74 222-295 2-100 (140)
69 3v69_A Protein filia; RNA-bind 97.9 3.1E-05 1.1E-09 67.4 7.4 68 404-472 58-125 (140)
70 3u1k_A Polyribonucleotide nucl 97.8 2.7E-05 9.2E-10 85.4 7.3 63 221-294 566-629 (630)
71 2cxc_A NUSA; transcription ter 97.7 3.8E-05 1.3E-09 68.4 6.0 102 130-258 36-139 (144)
72 3v69_A Protein filia; RNA-bind 97.5 0.00021 7.3E-09 62.1 7.9 69 223-297 57-125 (140)
73 3u1k_A Polyribonucleotide nucl 97.5 3.3E-05 1.1E-09 84.7 2.9 61 403-469 568-629 (630)
74 4aid_A Polyribonucleotide nucl 96.9 0.00038 1.3E-08 77.2 3.7 64 222-296 570-634 (726)
75 2cxc_A NUSA; transcription ter 96.9 0.0004 1.4E-08 61.8 3.0 38 222-259 36-73 (144)
76 4aid_A Polyribonucleotide nucl 96.8 0.00092 3.1E-08 74.2 5.2 64 403-472 571-635 (726)
77 2asb_A Transcription elongatio 96.1 0.0098 3.4E-07 57.4 7.2 93 139-259 126-221 (251)
78 1k0r_A NUSA; two component arr 96.0 0.007 2.4E-07 61.7 5.7 91 139-259 249-344 (366)
79 1hh2_P NUSA, N utilization sub 94.5 0.04 1.4E-06 55.8 5.7 92 139-259 245-340 (344)
80 2asb_A Transcription elongatio 94.2 0.043 1.5E-06 52.9 5.0 38 403-440 185-222 (251)
81 1k0r_A NUSA; two component arr 94.0 0.06 2.1E-06 54.8 5.8 38 403-440 308-345 (366)
82 3cdi_A Polynucleotide phosphor 92.8 0.033 1.1E-06 62.0 1.7 63 222-295 560-623 (723)
83 3cdi_A Polynucleotide phosphor 91.5 0.035 1.2E-06 61.8 0.0 63 403-471 561-624 (723)
84 1hh2_P NUSA, N utilization sub 91.0 0.2 6.9E-06 50.7 5.0 37 403-439 304-340 (344)
85 1e3p_A Guanosine pentaphosphat 89.2 0.037 1.3E-06 61.8 -2.3 61 223-294 599-660 (757)
86 1e3p_A Guanosine pentaphosphat 88.7 0.023 7.8E-07 63.6 -4.5 59 405-469 601-660 (757)
87 2pt7_G HP1451, hypothetical pr 71.2 2.5 8.5E-05 37.6 3.1 29 131-159 34-62 (152)
88 1wh9_A 40S ribosomal protein S 70.6 2 6.7E-05 34.9 2.1 28 131-158 36-63 (92)
89 2pt7_G HP1451, hypothetical pr 56.2 6.2 0.00021 35.0 2.7 65 223-296 34-98 (152)
90 1wh9_A 40S ribosomal protein S 49.8 7 0.00024 31.5 1.9 28 223-250 36-63 (92)
91 5gds_I Hirunorm V; serine prot 45.8 7.7 0.00026 23.1 1.1 20 4-23 4-23 (26)
92 3j20_C 30S ribosomal protein S 37.8 12 0.00042 34.9 1.7 27 131-157 41-67 (210)
93 3u5c_D RP13, YS3, 40S ribosoma 37.6 12 0.00041 35.6 1.6 28 131-158 45-72 (240)
94 2xzm_C KH domain containing pr 36.4 16 0.00055 34.8 2.3 29 130-158 47-75 (243)
95 3gku_A Probable RNA-binding pr 36.3 12 0.0004 35.4 1.3 33 131-163 93-125 (225)
96 2ba0_A Archeal exosome RNA bin 36.0 49 0.0017 31.0 5.7 59 406-470 140-198 (229)
97 1ihs_I Hirutonin; hydrolase(se 34.2 13 0.00046 22.0 0.8 13 11-23 6-18 (26)
98 3iz6_B 40S ribosomal protein S 33.8 12 0.00043 35.2 1.1 29 130-158 44-72 (227)
99 3iev_A GTP-binding protein ERA 31.5 21 0.00072 34.9 2.4 38 129-166 239-285 (308)
100 3r8n_C 30S ribosomal protein S 31.4 13 0.00043 34.7 0.7 26 132-157 63-88 (206)
101 2zkq_c 40S ribosomal protein S 30.3 15 0.0005 35.1 0.9 29 130-158 44-72 (243)
102 3i1m_C 30S ribosomal protein S 28.9 14 0.00049 34.9 0.6 27 131-157 63-89 (233)
103 2ba0_A Archeal exosome RNA bin 27.7 1.2E+02 0.004 28.4 6.8 59 224-293 138-196 (229)
104 2vqe_C 30S ribosomal protein S 27.0 22 0.00076 33.8 1.5 28 131-158 63-90 (239)
105 3iev_A GTP-binding protein ERA 26.3 30 0.001 33.8 2.4 30 221-250 239-269 (308)
106 3bbn_C Ribosomal protein S3; s 25.9 19 0.00065 33.8 0.8 28 131-158 71-98 (218)
107 3gku_A Probable RNA-binding pr 25.8 15 0.00053 34.6 0.2 61 403-465 93-153 (225)
108 2z0s_A Probable exosome comple 25.3 1.4E+02 0.0047 27.9 6.8 62 406-473 152-214 (235)
109 3u5c_D RP13, YS3, 40S ribosoma 25.0 27 0.00091 33.2 1.7 27 404-430 46-72 (240)
110 2kl8_A OR15; structural genomi 23.0 1.3E+02 0.0046 22.2 4.8 45 423-471 22-66 (85)
111 3j20_C 30S ribosomal protein S 21.6 34 0.0012 31.8 1.7 28 223-250 41-68 (210)
112 2xzm_C KH domain containing pr 21.2 42 0.0015 31.9 2.2 29 222-250 47-75 (243)
113 3iz6_B 40S ribosomal protein S 20.7 30 0.001 32.6 1.1 28 403-430 45-72 (227)
114 1go3_E DNA-directed RNA polyme 20.1 67 0.0023 28.8 3.3 27 130-159 7-34 (187)
No 1
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.92 E-value=7.6e-25 Score=202.28 Aligned_cols=161 Identities=24% Similarity=0.438 Sum_probs=129.9
Q ss_pred eEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhhhcccC
Q 009973 222 VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVDR 301 (521)
Q Consensus 222 ~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~~~~~ 301 (521)
++.+|+||..++|+||||+|++||+|+++|||+|+|.+.... ....+|.|+|+|++++|.+|+.+|.+++.+....
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~---~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~~- 77 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ---NTNVDKPLRIIGDPYKVQQACEMVMDILRERDQG- 77 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTS---SSSSCEEEEEEECHHHHHHHHHHHHHHTTCSSSC-
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCC---CCCCceEEEEEcCHHHHHHHHHHHHHHHHhccCC-
Confidence 578999999999999999999999999999999999763222 2357899999999999999999999988652100
Q ss_pred CccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCC
Q 009973 302 SIIPLFEMHMQMPNPQMDHIPPPQSWGPPQGLPPSGGPGYGHNPQYMPPPRQAESYYPPADLPPPMEKQPHQGISAYGRE 381 (521)
Q Consensus 302 ~~~p~~e~~~~~~~p~~~~~~p~~~~~p~~~~~~~gg~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~ 381 (521)
+|... ..|+..
T Consensus 78 --------------------------------------~~~~~-------------------------------~~~~~~ 88 (164)
T 2jvz_A 78 --------------------------------------GFGDR-------------------------------NEYGSR 88 (164)
T ss_dssp --------------------------------------CCSSC-------------------------------SSCTTS
T ss_pred --------------------------------------CCCCc-------------------------------cccCCC
Confidence 00000 000000
Q ss_pred CCCCCCCCCCCCCCCCcccceEEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCCCCCceEEEEEcCHHHHHHH
Q 009973 382 APVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTA 461 (521)
Q Consensus 382 ~~~~~~g~~~~~~~~~~~~~~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~VtI~Gt~e~V~~A 461 (521)
...+.+|.||.+++|+||||+|++|++|++.|||+|.|.+..+...++.|+|+|++++|+.|
T Consensus 89 ------------------~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~~~~v~~A 150 (164)
T 2jvz_A 89 ------------------IGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHA 150 (164)
T ss_dssp ------------------CSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESCHHHHHHH
T ss_pred ------------------CCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcCHHHHHHH
Confidence 01245688999999999999999999999999999999876655668999999999999999
Q ss_pred HHHHHHHHHhcc
Q 009973 462 QQLIQNFMAEAA 473 (521)
Q Consensus 462 ~~lI~~~i~~~~ 473 (521)
+.+|.+++.+..
T Consensus 151 ~~~I~~~i~~~~ 162 (164)
T 2jvz_A 151 ARIINDLLQSLR 162 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhh
Confidence 999999998753
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=200.70 Aligned_cols=155 Identities=22% Similarity=0.370 Sum_probs=130.5
Q ss_pred eEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhhhcccC
Q 009973 222 VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVDR 301 (521)
Q Consensus 222 ~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~~~~~ 301 (521)
.+++|+||..++|.||||+|++|++|+++|||+|+|.. +..| ++.+|.|+|+|+++++.+|+.+|.+++.+....
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~-~~~~---~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~~- 77 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAP-PETP---DSKVRMVIITGPPEAQFKAQGRIYGKLKEENFF- 77 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECC-CSST---TCSEEEEEEEECHHHHHHHHHHHHHHHHHTTSS-
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcC-CCCC---CCCceEEEEEcCHHHHHHHHHHHHHHHhccccc-
Confidence 57899999999999999999999999999999999987 3333 368899999999999999999999998753100
Q ss_pred CccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCC
Q 009973 302 SIIPLFEMHMQMPNPQMDHIPPPQSWGPPQGLPPSGGPGYGHNPQYMPPPRQAESYYPPADLPPPMEKQPHQGISAYGRE 381 (521)
Q Consensus 302 ~~~p~~e~~~~~~~p~~~~~~p~~~~~p~~~~~~~gg~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~ 381 (521)
+ |+
T Consensus 78 -------------~-----------------------------------~~----------------------------- 80 (163)
T 3krm_A 78 -------------G-----------------------------------PK----------------------------- 80 (163)
T ss_dssp -------------C-----------------------------------SS-----------------------------
T ss_pred -------------c-----------------------------------cc-----------------------------
Confidence 0 00
Q ss_pred CCCCCCCCCCCCCCCCcccceEEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCC--CCCCceEEEEEcCHHHHH
Q 009973 382 APVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETR--GVPGEMTVEISGTASQVQ 459 (521)
Q Consensus 382 ~~~~~~g~~~~~~~~~~~~~~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~--~~~~er~VtI~Gt~e~V~ 459 (521)
.....+.+|.||.+++|+|||++|++|++|++.|||+|.|.+.. ....++.|+|+|++++|+
T Consensus 81 ----------------~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~ 144 (163)
T 3krm_A 81 ----------------EEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQ 144 (163)
T ss_dssp ----------------CCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEECHHHHH
T ss_pred ----------------cCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeCHHHHH
Confidence 00235778999999999999999999999999999999998653 223345899999999999
Q ss_pred HHHHHHHHHHHhccC
Q 009973 460 TAQQLIQNFMAEAAA 474 (521)
Q Consensus 460 ~A~~lI~~~i~~~~~ 474 (521)
.|+.+|.+++.+...
T Consensus 145 ~A~~~I~~~i~~~~~ 159 (163)
T 3krm_A 145 MAQRKIRDILAQVKQ 159 (163)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
No 3
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.92 E-value=2.1e-24 Score=199.39 Aligned_cols=154 Identities=31% Similarity=0.412 Sum_probs=122.4
Q ss_pred eEEEEEeeccccccccccCchHHHHHHhhcCcEEEEeCC-CCCCCccEEEEeccCCCCCCchhHHHHHHHHhhhhhcCCC
Q 009973 130 SVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDG-PPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDGLD 208 (521)
Q Consensus 130 ~~~rllVP~~~vG~IIGKgG~~Ik~I~e~Tga~I~i~~~-~~~~~er~v~I~G~~e~~~~a~~a~~~l~~~~~~i~~~l~ 208 (521)
-+++|+||.+++|.||||+|++||+|+++|||+|+|.+. .+++.+|+|+|+|+++.+ ..|. ..+...+.+...
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v---~~A~---~~I~~~~~e~~~ 76 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQ---FKAQ---GRIYGKLKEENF 76 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHH---HHHH---HHHHHHHHHTTS
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHH---HHHH---HHHHHHHhcccc
Confidence 589999999999999999999999999999999999974 578899999999987632 2222 222222322100
Q ss_pred CCCCCCCCCCCCceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHH
Q 009973 209 SDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAME 288 (521)
Q Consensus 209 ~~~~~~~~~~~~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~ 288 (521)
. .+......+.+|.||..++|+||||+|++|++|++.|||+|.|.+ +..|. ..+++.|+|+|++++|.+|+.
T Consensus 77 ~-----~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~-~~~~~--~~~~~~v~I~G~~~~v~~A~~ 148 (163)
T 3krm_A 77 F-----GPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPR-DQTPD--ENDQVIVKIIGHFYASQMAQR 148 (163)
T ss_dssp S-----CSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCT-TCCCC--TTSEEEEEEEECHHHHHHHHH
T ss_pred c-----ccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECC-CCCCC--CCCceEEEEEeCHHHHHHHHH
Confidence 0 011134567899999999999999999999999999999999986 44453 234458999999999999999
Q ss_pred HHHHHHhhh
Q 009973 289 LIGSHLRKF 297 (521)
Q Consensus 289 ~I~~~l~~~ 297 (521)
+|.+++++.
T Consensus 149 ~I~~~i~~~ 157 (163)
T 3krm_A 149 KIRDILAQV 157 (163)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999874
No 4
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.92 E-value=6.5e-25 Score=205.70 Aligned_cols=162 Identities=31% Similarity=0.411 Sum_probs=122.9
Q ss_pred CCceEEEEEeeccccccccccCchHHHHHHhhcCcEEEEeCC---CCCCCccEEEEeccCCCCCCchhHHHHHHHHhhhh
Q 009973 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDG---PPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRI 203 (521)
Q Consensus 127 ~~~~~~rllVP~~~vG~IIGKgG~~Ik~I~e~Tga~I~i~~~---~~~~~er~v~I~G~~e~~~~a~~a~~~l~~~~~~i 203 (521)
+++++++|+||.+++|.||||+|++||+|+++|||+|+|.+. .+++.+|+|+|+|+++++ .+|.+.|.. .+
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v---~~A~~~I~~---~~ 76 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEAL---NAVHGFIAE---KI 76 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHH---HHHHHHHHH---HH
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHH---HHHHHHHHH---HH
Confidence 467999999999999999999999999999999999999853 467889999999986632 222222222 22
Q ss_pred hcCCCCCCCC-----CC----CCCCCceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEE
Q 009973 204 VDGLDSDSSH-----AP----SGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVV 274 (521)
Q Consensus 204 ~~~l~~~~~~-----~~----~~~~~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V 274 (521)
.+........ .+ .......+.+|+||.+++|+||||+|++||+|+++|||+|+|.+....| .+.+|.|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~---~~~~~~v 153 (178)
T 2anr_A 77 REMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI---NLQNRVV 153 (178)
T ss_dssp TCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-------CCEEEE
T ss_pred hccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCC---CCCceEE
Confidence 2211100000 00 0112347889999999999999999999999999999999998743322 3578999
Q ss_pred EEEcCHHHHHHHHHHHHHHHhhh
Q 009973 275 EVVGDASGVHKAMELIGSHLRKF 297 (521)
Q Consensus 275 ~I~G~~~~V~~A~~~I~~~l~~~ 297 (521)
+|+|++++|.+|+.+|.++|++.
T Consensus 154 ~I~G~~~~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 154 TVSGEPEQNRKAVELIIQKIQED 176 (178)
T ss_dssp EEESSHHHHHHHHHHHHHHHHSC
T ss_pred EEEcCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999763
No 5
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.91 E-value=1.8e-24 Score=202.66 Aligned_cols=172 Identities=25% Similarity=0.374 Sum_probs=132.7
Q ss_pred CCceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCC-CCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhhh
Q 009973 219 GGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAED-LPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKF 297 (521)
Q Consensus 219 ~~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~-~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 297 (521)
...++.+|+||..++|.||||+|++|++|+++|||+|+|....+ .| +..+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~---~~~er~v~I~G~~~~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP---GTTERVCLIQGTIEALNAVHGFIAEKIREM 79 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCT---TSSEEEEEEEECHHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCC---CCCCceEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 34689999999999999999999999999999999999986322 23 357899999999999999999999998653
Q ss_pred cccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCC
Q 009973 298 LVDRSIIPLFEMHMQMPNPQMDHIPPPQSWGPPQGLPPSGGPGYGHNPQYMPPPRQAESYYPPADLPPPMEKQPHQGISA 377 (521)
Q Consensus 298 ~~~~~~~p~~e~~~~~~~p~~~~~~p~~~~~p~~~~~~~gg~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~ 377 (521)
..... .. .+ . +.+++.
T Consensus 80 ~~~~~--------------~~---------~~---------------~----------~~~~~~---------------- 95 (178)
T 2anr_A 80 PQNVA--------------KT---------EP---------------V----------SILQPQ---------------- 95 (178)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred CCccc--------------cC---------Cc---------------c----------cccCCc----------------
Confidence 11000 00 00 0 000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccceEEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCC--CCCceEEEEEcCH
Q 009973 378 YGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG--VPGEMTVEISGTA 455 (521)
Q Consensus 378 ~g~~~~~~~~g~~~~~~~~~~~~~~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~--~~~er~VtI~Gt~ 455 (521)
.. .......+.+|.||.+++|+||||+|++|++|++.|||+|+|.+... ...++.|+|+|++
T Consensus 96 ~~----------------~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~ 159 (178)
T 2anr_A 96 TT----------------VNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGEP 159 (178)
T ss_dssp --------------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESSH
T ss_pred cC----------------CCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcCH
Confidence 00 00013468899999999999999999999999999999999987532 3467999999999
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 009973 456 SQVQTAQQLIQNFMAEAA 473 (521)
Q Consensus 456 e~V~~A~~lI~~~i~~~~ 473 (521)
++|+.|+.+|.++|.+.+
T Consensus 160 ~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 160 EQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp HHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 999999999999998653
No 6
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.91 E-value=2e-24 Score=198.88 Aligned_cols=156 Identities=31% Similarity=0.518 Sum_probs=122.4
Q ss_pred ceEEEEEeeccccccccccCchHHHHHHhhcCcEEEEeCCCCCCCccEEEEeccCCCCCCchhHHHHHHHHhhhhhcCCC
Q 009973 129 ESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDGLD 208 (521)
Q Consensus 129 ~~~~rllVP~~~vG~IIGKgG~~Ik~I~e~Tga~I~i~~~~~~~~er~v~I~G~~e~~~~a~~a~~~l~~~~~~i~~~l~ 208 (521)
.++++|+||.+.+|.||||+|++||+|+++|||+|+|++. ++.+|.|+|+|.++.+ ..|...+... +.+.+.
T Consensus 4 ~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~~v---~~A~~~I~~~---i~e~~~ 75 (160)
T 2jzx_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAI---FKAFAMIIDK---LEEDIS 75 (160)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHHHH---HHHHHHHHHH---HHHHHT
T ss_pred cEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHHHH---HHHHHHHHHH---HHhhcc
Confidence 4899999999999999999999999999999999999975 4779999999986532 2333333322 222111
Q ss_pred CCCCCCCCCCCCceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHH
Q 009973 209 SDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAME 288 (521)
Q Consensus 209 ~~~~~~~~~~~~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~ 288 (521)
..............+.+|.||.+++|+||||+|++|++|+++|||+|+|.+ +..|. +.++.|+|+|++++|.+|+.
T Consensus 76 ~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~-~~~~~---~~~~~v~I~G~~~~v~~A~~ 151 (160)
T 2jzx_A 76 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG-DMLPN---STERAITIAGIPQSIIECVK 151 (160)
T ss_dssp SCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCC-CCSTT---CCEEEEEEEECHHHHHHHHH
T ss_pred ccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECC-CCCCC---CCceEEEEEcCHHHHHHHHH
Confidence 100000001123579999999999999999999999999999999999986 44453 57899999999999999999
Q ss_pred HHHHHHhh
Q 009973 289 LIGSHLRK 296 (521)
Q Consensus 289 ~I~~~l~~ 296 (521)
+|.+++.+
T Consensus 152 ~I~~~i~e 159 (160)
T 2jzx_A 152 QICVVMLE 159 (160)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99998865
No 7
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.91 E-value=4.3e-24 Score=199.46 Aligned_cols=170 Identities=24% Similarity=0.409 Sum_probs=126.4
Q ss_pred ceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhhhccc
Q 009973 221 KVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVD 300 (521)
Q Consensus 221 ~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~~~~ 300 (521)
..+.+|+||..++|+||||+|++||+|+++|||+|+|...+ + ...+|.|+|+|++++|.+|+.+|.+++++....
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~--~---~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~ 76 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD--G---TTPERIAQITGPPDRAQHAAEIITDLLRSVQAG 76 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCT--T---SCSEEEEEEEECHHHHHHHHHHHHHHHHHHC--
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCC--C---CCCccEEEEEeCHHHHHHHHHHHHHHHHhcccC
Confidence 46789999999999999999999999999999999998522 2 256899999999999999999999999864210
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCC
Q 009973 301 RSIIPLFEMHMQMPNPQMDHIPPPQSWGPPQGLPPSGGPGYGHNPQYMPPPRQAESYYPPADLPPPMEKQPHQGISAYGR 380 (521)
Q Consensus 301 ~~~~p~~e~~~~~~~p~~~~~~p~~~~~p~~~~~~~gg~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~g~ 380 (521)
. +.+. .+ ++.+++.. . ..|.
T Consensus 77 ~-------------------------~~~~---~p-~~~~~~~~----------~--------------------~~~~- 96 (174)
T 1j4w_A 77 N-------------------------PGGP---GP-GGRGRGRG----------Q--------------------GNWN- 96 (174)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred C-------------------------CCCC---CC-CCCCCCCC----------C--------------------Cccc-
Confidence 0 0000 00 00000000 0 0000
Q ss_pred CCCCCCCCCCCCCCCCCcccceEEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCC---CCCCceEEEEEcCHHH
Q 009973 381 EAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETR---GVPGEMTVEISGTASQ 457 (521)
Q Consensus 381 ~~~~~~~g~~~~~~~~~~~~~~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~---~~~~er~VtI~Gt~e~ 457 (521)
.+ . .....+.+|.||.+++|+||||+|++|++|++.|||+|+|.+.. ....++.|+|+|++++
T Consensus 97 ---~~---~--------~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~ 162 (174)
T 1j4w_A 97 ---MG---P--------PGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQ 162 (174)
T ss_dssp ---------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHH
T ss_pred ---cC---C--------CCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEECCHHH
Confidence 00 0 01235788999999999999999999999999999999998753 2356899999999999
Q ss_pred HHHHHHHHHHHH
Q 009973 458 VQTAQQLIQNFM 469 (521)
Q Consensus 458 V~~A~~lI~~~i 469 (521)
|+.|+.||.++|
T Consensus 163 v~~A~~~I~~~i 174 (174)
T 1j4w_A 163 IDYARQLIEEKI 174 (174)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999874
No 8
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.91 E-value=6.4e-24 Score=195.48 Aligned_cols=156 Identities=25% Similarity=0.414 Sum_probs=129.5
Q ss_pred CceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhhhcc
Q 009973 220 GKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLV 299 (521)
Q Consensus 220 ~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~~~ 299 (521)
..++.+|+||...+|.||||+|++|++|+++|||+|+|... . ..+|.|+|+|+.++|.+|+.+|.+++.+...
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~-~------~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~~ 75 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-N------CPERIITLAGPTNAIFKAFAMIIDKLEEDIS 75 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC-T------TTEEEEEEEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC-C------CCceEEEEEeCHHHHHHHHHHHHHHHHhhcc
Confidence 36789999999999999999999999999999999999862 1 3679999999999999999999999876321
Q ss_pred cCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCC
Q 009973 300 DRSIIPLFEMHMQMPNPQMDHIPPPQSWGPPQGLPPSGGPGYGHNPQYMPPPRQAESYYPPADLPPPMEKQPHQGISAYG 379 (521)
Q Consensus 300 ~~~~~p~~e~~~~~~~p~~~~~~p~~~~~p~~~~~~~gg~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~g 379 (521)
.. ++ + .+.
T Consensus 76 ~~-------------------------------~~---------~--------------------------------~~~ 83 (160)
T 2jzx_A 76 SS-------------------------------MT---------N--------------------------------STA 83 (160)
T ss_dssp SC-------------------------------CC---------S--------------------------------SSC
T ss_pred cc-------------------------------CC---------C--------------------------------Ccc
Confidence 00 00 0 000
Q ss_pred CCCCCCCCCCCCCCCCCCcccceEEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccC-CCCCCceEEEEEcCHHHH
Q 009973 380 REAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQET-RGVPGEMTVEISGTASQV 458 (521)
Q Consensus 380 ~~~~~~~~g~~~~~~~~~~~~~~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~-~~~~~er~VtI~Gt~e~V 458 (521)
. .....+.+|.||.+++|+||||+|++|++|++.|||+|+|.+. .+...++.|+|+|++++|
T Consensus 84 --------~---------~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~~~~v 146 (160)
T 2jzx_A 84 --------A---------SRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSI 146 (160)
T ss_dssp --------C---------CCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEECHHHH
T ss_pred --------C---------CCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEcCHHHH
Confidence 0 0023688999999999999999999999999999999999863 234578999999999999
Q ss_pred HHHHHHHHHHHHh
Q 009973 459 QTAQQLIQNFMAE 471 (521)
Q Consensus 459 ~~A~~lI~~~i~~ 471 (521)
+.|+.+|.+++.+
T Consensus 147 ~~A~~~I~~~i~e 159 (160)
T 2jzx_A 147 IECVKQICVVMLE 159 (160)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999875
No 9
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.90 E-value=5.1e-24 Score=198.95 Aligned_cols=161 Identities=25% Similarity=0.390 Sum_probs=120.7
Q ss_pred ceEEEEEeeccccccccccCchHHHHHHhhcCcEEEEeCCCCCCCccEEEEeccCCCCCCchhHHHHHHHHhhhhhcCCC
Q 009973 129 ESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDGLD 208 (521)
Q Consensus 129 ~~~~rllVP~~~vG~IIGKgG~~Ik~I~e~Tga~I~i~~~~~~~~er~v~I~G~~e~~~~a~~a~~~l~~~~~~i~~~l~ 208 (521)
..+++|+||.+++|.||||+|++||+|+++|||+|+|.+..+++.+|+|+|+|.++.+. +|++.|..+.........
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~---~A~~~I~~~~~~~~~~~~ 78 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQ---HAAEIITDLLRSVQAGNP 78 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHH---HHHHHHHHHHHHHC----
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHH---HHHHHHHHHHHhcccCCC
Confidence 47899999999999999999999999999999999998766678899999999876443 333333333322211000
Q ss_pred C-CCC----------CCC-CCCCCceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEE
Q 009973 209 S-DSS----------HAP-SGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEV 276 (521)
Q Consensus 209 ~-~~~----------~~~-~~~~~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I 276 (521)
. ..+ ... .......+.+|.||.+++|+||||+|++||+|+++|||+|+|.+ +. +.+..+.++.|+|
T Consensus 79 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~-~~-~~~~~~~~~~v~I 156 (174)
T 1j4w_A 79 GGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQR-NP-PPNADPNMKLFTI 156 (174)
T ss_dssp -------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEEC-CC-TTTSCTTEEEEEE
T ss_pred CCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECC-CC-CCCCCCCceEEEE
Confidence 0 000 000 00012468899999999999999999999999999999999986 32 2233467899999
Q ss_pred EcCHHHHHHHHHHHHHHH
Q 009973 277 VGDASGVHKAMELIGSHL 294 (521)
Q Consensus 277 ~G~~~~V~~A~~~I~~~l 294 (521)
+|++++|.+|+.+|.++|
T Consensus 157 ~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 157 RGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp ECCHHHHHHHHHHHHHHC
T ss_pred ECCHHHHHHHHHHHHHhC
Confidence 999999999999999864
No 10
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.90 E-value=4.9e-23 Score=190.15 Aligned_cols=156 Identities=19% Similarity=0.347 Sum_probs=119.0
Q ss_pred eEEEEEeeccccccccccCchHHHHHHhhcCcEEEEeCC--CCCCCccEEEEeccCCCCCCchhHHHHHHHHhhhhhcCC
Q 009973 130 SVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDG--PPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDGL 207 (521)
Q Consensus 130 ~~~rllVP~~~vG~IIGKgG~~Ik~I~e~Tga~I~i~~~--~~~~~er~v~I~G~~e~~~~a~~a~~~l~~~~~~i~~~l 207 (521)
++++|+||.+++|.||||+|++||+|+++|||+|+|.+. .++..+|.|+|+|.++.+ ..|...|. ..+.+ .
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v---~~A~~~I~---~ii~e-~ 74 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKV---QQACEMVM---DILRE-R 74 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHH---HHHHHHHH---HHTTC-S
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHH---HHHHHHHH---HHHHh-c
Confidence 689999999999999999999999999999999999753 346778999999976532 22222222 22221 1
Q ss_pred CCCCCCC--CCCCCCceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHH
Q 009973 208 DSDSSHA--PSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHK 285 (521)
Q Consensus 208 ~~~~~~~--~~~~~~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~ 285 (521)
....... ..+.....+.+|.||..++|+||||+|++|++|+++|||+|.|.+.+ + ...++.|+|+|++++|.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~--~---~~~~~~v~I~G~~~~v~~ 149 (164)
T 2jvz_A 75 DQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G---TGPEKIAHIMGPPDRCEH 149 (164)
T ss_dssp SSCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC--T---TSSEEEEEEESCHHHHHH
T ss_pred cCCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC--C---CCCcEEEEEEcCHHHHHH
Confidence 1111000 00111134688999999999999999999999999999999998632 1 245799999999999999
Q ss_pred HHHHHHHHHhhh
Q 009973 286 AMELIGSHLRKF 297 (521)
Q Consensus 286 A~~~I~~~l~~~ 297 (521)
|+.+|.+++++.
T Consensus 150 A~~~I~~~i~~~ 161 (164)
T 2jvz_A 150 AARIINDLLQSL 161 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 999999999763
No 11
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.87 E-value=9.9e-23 Score=208.76 Aligned_cols=221 Identities=14% Similarity=0.165 Sum_probs=154.9
Q ss_pred CCceEEEEEeeccccccccccCc--hHHHHHHhhcCcEEEEeCCC-----CCCCccEEEEeccCCCCCCchhHHHHHHHH
Q 009973 127 PGESVFRMLVPAQKVGSIIGRKG--EFIKKIVEETRARIKILDGP-----PGTTERAVMISAKEEPESSLPPAMDGLLRV 199 (521)
Q Consensus 127 ~~~~~~rllVP~~~vG~IIGKgG--~~Ik~I~e~Tga~I~i~~~~-----~~~~er~v~I~G~~e~~~~a~~a~~~l~~~ 199 (521)
...+++++.||..+++.||||+| ++|++|+++|||+|+|++.. +......|+|+|.+++|+.| ..
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~A---R~----- 98 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRA---RM----- 98 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHH---HH-----
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHH---HH-----
Confidence 45699999999999999999999 99999999999999999754 12355789999998854332 22
Q ss_pred hhhhhcCCCCCCCCCCCCCCCceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcC
Q 009973 200 HKRIVDGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGD 279 (521)
Q Consensus 200 ~~~i~~~l~~~~~~~~~~~~~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~ 279 (521)
+|.+. ...+..+.+|...++. ...+..|.. ++..+++|.+....+ ..+.....|+|+|.
T Consensus 99 --~I~~l-------------~Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~---~~~~~sd~V~IrG~ 157 (376)
T 3n89_A 99 --LMRRN-------------CHFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPE---KNGIVTTYLRITAR 157 (376)
T ss_dssp --HHHHS-------------CEEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC--------CEEEEEEEEE
T ss_pred --HHHhc-------------CCceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCccc---ccCCCCCEEEEEcC
Confidence 22220 1345556666543332 111234444 467899998865211 11123578999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009973 280 ASGVHKAMELIGSHLRKFLVDRSIIPLFEMHMQMPNPQMDHIPPPQSWGPPQGLPPSGGPGYGHNPQYMPPPRQAESYYP 359 (521)
Q Consensus 280 ~~~V~~A~~~I~~~l~~~~~~~~~~p~~e~~~~~~~p~~~~~~p~~~~~p~~~~~~~gg~g~~~~~~~~~~p~~~~~~~~ 359 (521)
..++.+|.+.+..+++... +...
T Consensus 158 ~~nv~~akeA~~~Ll~~l~-~~e~-------------------------------------------------------- 180 (376)
T 3n89_A 158 EKNQHELIEAAKRLNEILF-RESP-------------------------------------------------------- 180 (376)
T ss_dssp GGGHHHHHHHHHHHHHHHC-C--C--------------------------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHH-hhhc--------------------------------------------------------
Confidence 9888887777777665421 0000
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccceEEEEEecCCCccceecCCC--chHHHHHHHhCCeEEE
Q 009973 360 PADLPPPMEKQPHQGISAYGREAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAG--ASISYIRRSSGATVTI 437 (521)
Q Consensus 360 ~~~~~~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~~~~~t~~i~VP~~~vG~IIGkgG--~~Ik~Ir~~SGA~I~I 437 (521)
.....++.+|.|+..++..|||++| ..|++|++.|||+|.+
T Consensus 181 -------------------------------------~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~F 223 (376)
T 3n89_A 181 -------------------------------------APENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISY 223 (376)
T ss_dssp -------------------------------------CCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEEC
T ss_pred -------------------------------------ccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEEC
Confidence 0002468899999999999999999 4569999999999999
Q ss_pred ccCCCC----CCceEEEEEcCHHHHHHHHHHHHHHHH
Q 009973 438 QETRGV----PGEMTVEISGTASQVQTAQQLIQNFMA 470 (521)
Q Consensus 438 ~~~~~~----~~er~VtI~Gt~e~V~~A~~lI~~~i~ 470 (521)
++..+. .....|+|+|+.++|..|+.+|.++|-
T Consensus 224 P~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lLP 260 (376)
T 3n89_A 224 PCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLLP 260 (376)
T ss_dssp C---------CCEEEEEEESCHHHHHHHHHHHHHTSE
T ss_pred CCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhCC
Confidence 865331 235689999999999999999999763
No 12
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.76 E-value=3.3e-18 Score=154.49 Aligned_cols=134 Identities=21% Similarity=0.339 Sum_probs=105.7
Q ss_pred ceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhhhccc
Q 009973 221 KVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFLVD 300 (521)
Q Consensus 221 ~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~~~~ 300 (521)
.++.+|+||.+.+|.+||++|++|+.|++++| |++...++ ..++.+...++++.|.+|+.++ . .
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~~------~~~~~i~~~~~p~~v~~~~~~l----~-~--- 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLDE------DTCTFHIYGEDQDAVKKARSFL----E-F--- 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEET------TTTEEEEEESSHHHHHHHHHHH----C-E---
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccCC------CchheeeccCCHHHHHHHHHhh----h-c---
Confidence 46889999999999999999999999999999 44432111 2345555556799998886532 1 0
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCC
Q 009973 301 RSIIPLFEMHMQMPNPQMDHIPPPQSWGPPQGLPPSGGPGYGHNPQYMPPPRQAESYYPPADLPPPMEKQPHQGISAYGR 380 (521)
Q Consensus 301 ~~~~p~~e~~~~~~~p~~~~~~p~~~~~p~~~~~~~gg~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~g~ 380 (521)
T Consensus 67 -------------------------------------------------------------------------------- 66 (144)
T 2qnd_A 67 -------------------------------------------------------------------------------- 66 (144)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCcccceEEEEEecCCCccceecCCCchHHHHHHHhCC-eEEEccCCCCC---Cc--eEEEEEcC
Q 009973 381 EAPVNVHGSSNAQSTPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGA-TVTIQETRGVP---GE--MTVEISGT 454 (521)
Q Consensus 381 ~~~~~~~g~~~~~~~~~~~~~~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA-~I~I~~~~~~~---~e--r~VtI~Gt 454 (521)
...++.||.+++|++|||+|.||+.|++.||| +|+|....+.. .+ +.|+|+|+
T Consensus 67 ---------------------~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~ 125 (144)
T 2qnd_A 67 ---------------------AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGT 125 (144)
T ss_dssp ---------------------EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEE
T ss_pred ---------------------ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeC
Confidence 02568999999999999999999999999997 89998653321 23 45899999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 009973 455 ASQVQTAQQLIQNFMAE 471 (521)
Q Consensus 455 ~e~V~~A~~lI~~~i~~ 471 (521)
+++|+.|+.||.++|..
T Consensus 126 ~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 126 KDSIANATVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999975
No 13
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.74 E-value=1.1e-17 Score=151.03 Aligned_cols=136 Identities=20% Similarity=0.276 Sum_probs=101.1
Q ss_pred eEEEEEeeccccccccccCchHHHHHHhhcCcEEEEeCCCCCCCccEEEEeccCCCCCCchhHHHHHHHHhhhhhcCCCC
Q 009973 130 SVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIVDGLDS 209 (521)
Q Consensus 130 ~~~rllVP~~~vG~IIGKgG~~Ik~I~e~Tga~I~i~~~~~~~~er~v~I~G~~e~~~~a~~a~~~l~~~~~~i~~~l~~ 209 (521)
++.+|+||.+.+|++|||+|++|++|++++|+.|..... .+++.+...++++ ++.++.. +++
T Consensus 4 ~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~---~~~~~i~~~~~p~----------~v~~~~~-~l~---- 65 (144)
T 2qnd_A 4 FHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDE---DTCTFHIYGEDQD----------AVKKARS-FLE---- 65 (144)
T ss_dssp CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEET---TTTEEEEEESSHH----------HHHHHHH-HHC----
T ss_pred eEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCC---CchheeeccCCHH----------HHHHHHH-hhh----
Confidence 789999999999999999999999999999944433322 2344444444444 2222222 222
Q ss_pred CCCCCCCCCCCceEEEEEeccccccccccCCchhHHHHHHHhcc-cEEEcCCCCCCcccCCCC--eEEEEEcCHHHHHHH
Q 009973 210 DSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNC-IVRVLGAEDLPVFALQDD--RVVEVVGDASGVHKA 286 (521)
Q Consensus 210 ~~~~~~~~~~~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa-~I~i~~~~~~P~~~~~~e--r~V~I~G~~~~V~~A 286 (521)
....++.||.+++|++|||+|++||.|++.||| +|+|...++. .. ..++ +.|+|+|++++|.+|
T Consensus 66 -----------~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~-~~-~~~~~~~~vtI~G~~~~v~~A 132 (144)
T 2qnd_A 66 -----------FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEK-NV-PQEEGMVPFVFVGTKDSIANA 132 (144)
T ss_dssp -----------EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTT-CC-CCCTTEEEEEEEEEHHHHHHH
T ss_pred -----------cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCC-Cc-cccCCeeEEEEEeCHHHHHHH
Confidence 113789999999999999999999999999997 9999874321 11 1133 468999999999999
Q ss_pred HHHHHHHHhh
Q 009973 287 MELIGSHLRK 296 (521)
Q Consensus 287 ~~~I~~~l~~ 296 (521)
+.+|..+|.+
T Consensus 133 k~li~~~l~~ 142 (144)
T 2qnd_A 133 TVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 14
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.66 E-value=3.8e-16 Score=149.98 Aligned_cols=144 Identities=23% Similarity=0.326 Sum_probs=111.5
Q ss_pred ceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcC-----HHHHHHHHHHHHHHHh
Q 009973 221 KVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGD-----ASGVHKAMELIGSHLR 295 (521)
Q Consensus 221 ~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~-----~~~V~~A~~~I~~~l~ 295 (521)
....++.||.+.+|.|||++|++|+.|+++|||+|+|.. .++.|+|.++ ++++.+|+.+|..+++
T Consensus 33 P~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~----------~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~r 102 (219)
T 2e3u_A 33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS----------ETGEVWITSTKETEDPLAVWKARDIVLAIGR 102 (219)
T ss_dssp CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT----------TTCEEEEEECTTCCSHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc----------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhc
Confidence 346789999999999999999999999999999999974 3577888876 5999999999999885
Q ss_pred hhcccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCC
Q 009973 296 KFLVDRSIIPLFEMHMQMPNPQMDHIPPPQSWGPPQGLPPSGGPGYGHNPQYMPPPRQAESYYPPADLPPPMEKQPHQGI 375 (521)
Q Consensus 296 ~~~~~~~~~p~~e~~~~~~~p~~~~~~p~~~~~p~~~~~~~gg~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~ 375 (521)
.+..+... .++..
T Consensus 103 g~~~e~g~-~ll~d------------------------------------------------------------------ 115 (219)
T 2e3u_A 103 GFSPERAF-RLLNE------------------------------------------------------------------ 115 (219)
T ss_dssp TCCHHHHG-GGGST------------------------------------------------------------------
T ss_pred cCCccccc-eeccC------------------------------------------------------------------
Confidence 42111000 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccceEEEEEe-----------cCCCccceecCCCchHHHHHHHhCCeEEEccCCCCC
Q 009973 376 SAYGREAPVNVHGSSNAQSTPSMITQVTQQMQI-----------PLSYADAVIGTAGASISYIRRSSGATVTIQETRGVP 444 (521)
Q Consensus 376 ~~~g~~~~~~~~g~~~~~~~~~~~~~~t~~i~V-----------P~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~ 444 (521)
......+.| +...+|+||||+|.+|+.|++.|||+|.|.+
T Consensus 116 ------------------------d~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~----- 166 (219)
T 2e3u_A 116 ------------------------GEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYG----- 166 (219)
T ss_dssp ------------------------TCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEET-----
T ss_pred ------------------------CccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECC-----
Confidence 000001112 2236899999999999999999999999964
Q ss_pred CceEEEEEcCHHHHHHHHHHHHHHHHhc
Q 009973 445 GEMTVEISGTASQVQTAQQLIQNFMAEA 472 (521)
Q Consensus 445 ~er~VtI~Gt~e~V~~A~~lI~~~i~~~ 472 (521)
+.|+|.|++++++.|+.+|.++|...
T Consensus 167 --~~v~i~G~~~~i~~A~~~i~~li~g~ 192 (219)
T 2e3u_A 167 --KTVAIIGNPIQIEIAKTAIEKLARGS 192 (219)
T ss_dssp --TEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred --eEEEEEeCHHHHHHHHHHHHHHHcCC
Confidence 56999999999999999999999653
No 15
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.65 E-value=3e-16 Score=150.69 Aligned_cols=145 Identities=25% Similarity=0.365 Sum_probs=100.6
Q ss_pred eEEEEEeeccccccccccCchHHHHHHhhcCcEEEEeCCCCCCCccEEEEeccCCCC--CCchhHHHHHHHHhhhhhcCC
Q 009973 130 SVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPE--SSLPPAMDGLLRVHKRIVDGL 207 (521)
Q Consensus 130 ~~~rllVP~~~vG~IIGKgG~~Ik~I~e~Tga~I~i~~~~~~~~er~v~I~G~~e~~--~~a~~a~~~l~~~~~~i~~~l 207 (521)
-+.++.||.+.+|.|||++|++|+.|+++|||+|++. ..++.|+|+++...- +.+.+|.+.|.. +....
T Consensus 34 ~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~-----~~~g~V~I~~~~~t~d~~~i~kA~~~I~~----i~rg~ 104 (219)
T 2e3u_A 34 QEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITID-----SETGEVWITSTKETEDPLAVWKARDIVLA----IGRGF 104 (219)
T ss_dssp CEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEEC-----TTTCEEEEEECTTCCSHHHHHHHHHHHHH----HHTTC
T ss_pred EEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEE-----cCCCEEEEecCCCCCCHHHHHHHHHHHHH----HhccC
Confidence 4679999999999999999999999999999999997 245779999865211 112222222221 11100
Q ss_pred CCCCCCCCCCCCCceEEEEEec-----------cccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEE
Q 009973 208 DSDSSHAPSGTGGKVSTKLLVP-----------ASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEV 276 (521)
Q Consensus 208 ~~~~~~~~~~~~~~~t~~l~VP-----------~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I 276 (521)
+.+...... .+......+.++ ...+|+||||+|++|+.|++.|||+|.|.. +.|+|
T Consensus 105 ~~e~g~~ll-~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~------------~~v~i 171 (219)
T 2e3u_A 105 SPERAFRLL-NEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYG------------KTVAI 171 (219)
T ss_dssp CHHHHGGGG-STTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEET------------TEEEE
T ss_pred Cccccceec-cCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECC------------eEEEE
Confidence 000000000 011111223333 236899999999999999999999999963 67999
Q ss_pred EcCHHHHHHHHHHHHHHHhh
Q 009973 277 VGDASGVHKAMELIGSHLRK 296 (521)
Q Consensus 277 ~G~~~~V~~A~~~I~~~l~~ 296 (521)
.|+.++|+.|+.+|.+++..
T Consensus 172 ~G~~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 172 IGNPIQIEIAKTAIEKLARG 191 (219)
T ss_dssp EECHHHHHHHHHHHHHHHTT
T ss_pred EeCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999965
No 16
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.59 E-value=4e-15 Score=123.96 Aligned_cols=75 Identities=25% Similarity=0.457 Sum_probs=69.3
Q ss_pred cceEEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccC
Q 009973 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAA 474 (521)
Q Consensus 400 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~VtI~Gt~e~V~~A~~lI~~~i~~~~~ 474 (521)
..++.+|.||.+++|+||||+|++|++|++.|||+|+|.+..+...++.|+|+|++++|+.|+.||.++|.+...
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~~ 87 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRS 87 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhccc
Confidence 467899999999999999999999999999999999999876666789999999999999999999999997654
No 17
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.57 E-value=8.4e-15 Score=119.35 Aligned_cols=74 Identities=35% Similarity=0.518 Sum_probs=68.4
Q ss_pred cceEEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009973 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAA 473 (521)
Q Consensus 400 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~VtI~Gt~e~V~~A~~lI~~~i~~~~ 473 (521)
..++.+|.||.+++|+||||+|++|++|++.|||+|+|.+......+|.|+|+|++++|+.|+.+|.+++.+..
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~ 78 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYS 78 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 45789999999999999999999999999999999999886656678999999999999999999999998754
No 18
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=4.5e-15 Score=126.68 Aligned_cols=73 Identities=19% Similarity=0.382 Sum_probs=66.3
Q ss_pred EEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccCC
Q 009973 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAAP 475 (521)
Q Consensus 403 t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~VtI~Gt~e~V~~A~~lI~~~i~~~~~~ 475 (521)
+.+|.||.+++|+||||+|++||+|+++|||+|+|.++.....+|.|+|+|++++|++|+.||++++.+....
T Consensus 12 ~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~~g 84 (106)
T 2hh3_A 12 GIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLRSG 84 (106)
T ss_dssp CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHHHHHC--
T ss_pred EEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhccccC
Confidence 6789999999999999999999999999999999987665667899999999999999999999999987653
No 19
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.55 E-value=4.9e-15 Score=120.74 Aligned_cols=73 Identities=32% Similarity=0.469 Sum_probs=66.8
Q ss_pred cceEEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhc
Q 009973 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEA 472 (521)
Q Consensus 400 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~VtI~Gt~e~V~~A~~lI~~~i~~~ 472 (521)
..++.+|.||.+++|+||||+|++|++|++.|||+|+|.+..+...++.|+|+|++++++.|+.||.+++.+.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999999998666678999999999999999999999999876
No 20
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=4.7e-15 Score=126.97 Aligned_cols=71 Identities=27% Similarity=0.371 Sum_probs=64.6
Q ss_pred EEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCC---CCCceEEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009973 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG---VPGEMTVEISGTASQVQTAQQLIQNFMAEAA 473 (521)
Q Consensus 403 t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~---~~~er~VtI~Gt~e~V~~A~~lI~~~i~~~~ 473 (521)
+.+|.||.+++|+||||+|++||+|++.|||+|+|.+..+ ...++.|+|+|++++|+.|+.+|+++|.+..
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhccc
Confidence 6789999999999999999999999999999999987632 3467999999999999999999999998764
No 21
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.55 E-value=1.3e-14 Score=136.04 Aligned_cols=141 Identities=20% Similarity=0.281 Sum_probs=112.8
Q ss_pred EEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEE-----cCHHHHHHHHHHHHHHHhhh
Q 009973 223 STKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVV-----GDASGVHKAMELIGSHLRKF 297 (521)
Q Consensus 223 t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~-----G~~~~V~~A~~~I~~~l~~~ 297 (521)
..++.||...+|.|||++|++++.|++.+|++|++.. .++.|+|. |++.++.+|..+|..+.+.+
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~----------~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf 74 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT----------ENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGF 74 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET----------TTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTC
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc----------CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 4689999999999999999999999999999999974 46788888 99999999999999998764
Q ss_pred cccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCC
Q 009973 298 LVDRSIIPLFEMHMQMPNPQMDHIPPPQSWGPPQGLPPSGGPGYGHNPQYMPPPRQAESYYPPADLPPPMEKQPHQGISA 377 (521)
Q Consensus 298 ~~~~~~~p~~e~~~~~~~p~~~~~~p~~~~~p~~~~~~~gg~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~ 377 (521)
..+.. +.+++ +
T Consensus 75 ~~e~A-~~Ll~----------------------------------------------D---------------------- 85 (191)
T 1tua_A 75 PPEKA-FRLLE----------------------------------------------E---------------------- 85 (191)
T ss_dssp CHHHH-GGGGS----------------------------------------------T----------------------
T ss_pred CHHHh-hhccc----------------------------------------------C----------------------
Confidence 22110 00000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccceEEEEEec----------CCCccceecCCCchHHHHHHHhCCeEEEccCCCCCCce
Q 009973 378 YGREAPVNVHGSSNAQSTPSMITQVTQQMQIP----------LSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEM 447 (521)
Q Consensus 378 ~g~~~~~~~~g~~~~~~~~~~~~~~t~~i~VP----------~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er 447 (521)
......+.++ ....|+|||++|.+|+.|+..|||+|.|.+ +
T Consensus 86 ----------------------d~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~-------~ 136 (191)
T 1tua_A 86 ----------------------DQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE-------Y 136 (191)
T ss_dssp ----------------------TEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECS-------S
T ss_pred ----------------------cceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcC-------C
Confidence 0001112222 346899999999999999999999999965 3
Q ss_pred EEEEEcCHHHHHHHHHHHHHHHHh
Q 009973 448 TVEISGTASQVQTAQQLIQNFMAE 471 (521)
Q Consensus 448 ~VtI~Gt~e~V~~A~~lI~~~i~~ 471 (521)
+|.|.|++++++.|+..|.++|..
T Consensus 137 ~v~i~G~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 137 EVAIIGDYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred EEEEEeChHHHHHHHHHHHHHHcC
Confidence 799999999999999999999963
No 22
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.54 E-value=6.1e-15 Score=118.39 Aligned_cols=73 Identities=29% Similarity=0.441 Sum_probs=67.5
Q ss_pred cceEEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhc
Q 009973 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEA 472 (521)
Q Consensus 400 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~VtI~Gt~e~V~~A~~lI~~~i~~~ 472 (521)
..++.+|.||.+++|+|||++|++|++|++.|||+|+|.++.+...++.|+|+|++++++.|+.||.+++.+.
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 3578899999999999999999999999999999999998766778999999999999999999999998753
No 23
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.52 E-value=1.7e-14 Score=135.24 Aligned_cols=139 Identities=17% Similarity=0.253 Sum_probs=100.0
Q ss_pred EEEEEeeccccccccccCchHHHHHHhhcCcEEEEeCCCCCCCccEEEEecc-----CCCCCCchhHHHHHHHHh--hhh
Q 009973 131 VFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAK-----EEPESSLPPAMDGLLRVH--KRI 203 (521)
Q Consensus 131 ~~rllVP~~~vG~IIGKgG~~Ik~I~e~Tga~I~i~~~~~~~~er~v~I~G~-----~e~~~~a~~a~~~l~~~~--~~i 203 (521)
.++++||.+.+|.|||++|++++.|++.+||+|++. ..++.|+|+.+ +..+..|...+.++.+-+ ...
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id-----~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A 79 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVD-----TENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKA 79 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEE-----TTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEE-----cCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHh
Confidence 479999999999999999999999999999999997 46788999843 332111222222211100 000
Q ss_pred hcCCCCCCCCCCCCCCCceEEEEEec----------cccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeE
Q 009973 204 VDGLDSDSSHAPSGTGGKVSTKLLVP----------ASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRV 273 (521)
Q Consensus 204 ~~~l~~~~~~~~~~~~~~~t~~l~VP----------~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~ 273 (521)
+..++ +......+.++ ....|+||||+|.+|+.|+..|||+|.|.. +.
T Consensus 80 ~~Ll~----------Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~------------~~ 137 (191)
T 1tua_A 80 FRLLE----------EDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE------------YE 137 (191)
T ss_dssp GGGGS----------TTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECS------------SE
T ss_pred hhccc----------CcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcC------------CE
Confidence 11111 11222233343 246899999999999999999999999963 48
Q ss_pred EEEEcCHHHHHHHHHHHHHHHhh
Q 009973 274 VEVVGDASGVHKAMELIGSHLRK 296 (521)
Q Consensus 274 V~I~G~~~~V~~A~~~I~~~l~~ 296 (521)
|.|.|+.++++.|+..|.+++..
T Consensus 138 v~i~G~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 138 VAIIGDYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHTT
T ss_pred EEEEeChHHHHHHHHHHHHHHcC
Confidence 99999999999999999999964
No 24
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.50 E-value=1.8e-14 Score=119.24 Aligned_cols=73 Identities=36% Similarity=0.520 Sum_probs=68.1
Q ss_pred cceEEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhc
Q 009973 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEA 472 (521)
Q Consensus 400 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~VtI~Gt~e~V~~A~~lI~~~i~~~ 472 (521)
..++.+|.||.+++|+||||+|++|++|++.|||+|+|.+......++.|+|+|++++|+.|+.+|++++.+.
T Consensus 12 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 12 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 5688999999999999999999999999999999999988666677899999999999999999999999875
No 25
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.50 E-value=3.2e-14 Score=114.14 Aligned_cols=71 Identities=23% Similarity=0.349 Sum_probs=63.5
Q ss_pred ceEEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCC---CCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Q 009973 401 QVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETR---GVPGEMTVEISGTASQVQTAQQLIQNFMAE 471 (521)
Q Consensus 401 ~~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~---~~~~er~VtI~Gt~e~V~~A~~lI~~~i~~ 471 (521)
.++.+|.||.+++|+|||++|++|++|++.|||+|+|.+.. +...++.|+|+|++++++.|+.+|.+++.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 35788999999999999999999999999999999998752 345689999999999999999999998754
No 26
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.49 E-value=2.5e-14 Score=113.83 Aligned_cols=69 Identities=23% Similarity=0.354 Sum_probs=64.5
Q ss_pred ceEEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Q 009973 401 QVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAE 471 (521)
Q Consensus 401 ~~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~VtI~Gt~e~V~~A~~lI~~~i~~ 471 (521)
.++.+|.||.+++|+|||++|++|++|++.|||+|+|.+. ...+|.|+|+|+++++..|+.+|.++|.+
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~--~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS--CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC--CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 4788999999999999999999999999999999999875 45789999999999999999999999975
No 27
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.46 E-value=1.1e-13 Score=115.75 Aligned_cols=74 Identities=22% Similarity=0.427 Sum_probs=66.8
Q ss_pred cceEEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCC--CCCceEEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009973 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG--VPGEMTVEISGTASQVQTAQQLIQNFMAEAA 473 (521)
Q Consensus 400 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~--~~~er~VtI~Gt~e~V~~A~~lI~~~i~~~~ 473 (521)
..++.+|.||.+++|+||||+|++||+|++.|||+|+|.+... ...+|.|+|+|++++|+.|+.+|.+++.+..
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 88 (94)
T 1x4m_A 13 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQG 88 (94)
T ss_dssp CCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCCCS
T ss_pred CcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhccC
Confidence 4678999999999999999999999999999999999987533 3468999999999999999999999998653
No 28
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.45 E-value=7.1e-14 Score=115.12 Aligned_cols=72 Identities=21% Similarity=0.328 Sum_probs=65.4
Q ss_pred eEEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCC---CCCCceEEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009973 402 VTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETR---GVPGEMTVEISGTASQVQTAQQLIQNFMAEAA 473 (521)
Q Consensus 402 ~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~---~~~~er~VtI~Gt~e~V~~A~~lI~~~i~~~~ 473 (521)
++.+|.||.+++|+|||++|++|++|++.|||+|+|.+.. +...++.|+|+|++++++.|+.+|.++|.+..
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccc
Confidence 5788999999999999999999999999999999998753 34568999999999999999999999998754
No 29
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=7.5e-14 Score=113.69 Aligned_cols=70 Identities=21% Similarity=0.347 Sum_probs=63.1
Q ss_pred cceEEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhc
Q 009973 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEA 472 (521)
Q Consensus 400 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~VtI~Gt~e~V~~A~~lI~~~i~~~ 472 (521)
.+++.+|.||.+++|+||||+|++||+|+++|||+|+|+... .++.|+|+|++++|+.|+++|.+++...
T Consensus 8 ~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~---~~~~v~ItG~~e~v~~A~~~I~~~i~~r 77 (83)
T 2dgr_A 8 GQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD---KEPVFAVTGMPENVDRAREEIEAHITLR 77 (83)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS---SCCEEEEEECTTTHHHHHHHHHHHHHSC
T ss_pred CceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC---CCCeEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 567899999999999999999999999999999999998632 3588999999999999999999987643
No 30
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.44 E-value=3e-13 Score=115.18 Aligned_cols=74 Identities=30% Similarity=0.412 Sum_probs=66.2
Q ss_pred cceEEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCCC--CCceEEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009973 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGV--PGEMTVEISGTASQVQTAQQLIQNFMAEAA 473 (521)
Q Consensus 400 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~--~~er~VtI~Gt~e~V~~A~~lI~~~i~~~~ 473 (521)
...+.+|.||.+++|+||||+|++|++|++.|||+|+|.+..+. ..++.|+|+|++++++.|+.+|.+++.+..
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 35688999999999999999999999999999999999875432 258999999999999999999999997654
No 31
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.42 E-value=3.6e-13 Score=110.42 Aligned_cols=70 Identities=21% Similarity=0.390 Sum_probs=63.5
Q ss_pred ceEEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCC--CCCceEEEEEcCHHHHHHHHHHHHHHHH
Q 009973 401 QVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG--VPGEMTVEISGTASQVQTAQQLIQNFMA 470 (521)
Q Consensus 401 ~~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~--~~~er~VtI~Gt~e~V~~A~~lI~~~i~ 470 (521)
..+.+|.||.+++|+||||+|++||+|++.|||+|.|.+... ...+|.|+|+|++++++.|+.+|.+++.
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 84 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhc
Confidence 357789999999999999999999999999999999987532 4568999999999999999999999875
No 32
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.41 E-value=6.9e-13 Score=107.92 Aligned_cols=74 Identities=26% Similarity=0.539 Sum_probs=66.2
Q ss_pred CCceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhhh
Q 009973 219 GGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKF 297 (521)
Q Consensus 219 ~~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 297 (521)
...++.+|.||.+++|+||||+|++|++|+++|||+|+|.+. .| ++.+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 4 g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT--TS---CSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC--CC---CCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 346899999999999999999999999999999999999752 22 357899999999999999999999999864
No 33
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.41 E-value=3.1e-13 Score=107.48 Aligned_cols=70 Identities=26% Similarity=0.515 Sum_probs=64.1
Q ss_pred CceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhh
Q 009973 220 GKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296 (521)
Q Consensus 220 ~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~ 296 (521)
..++.+|+||.+.+|.||||+|++|++|+++|||+|+|.+. . ..+|.|+|+|+++++.+|+.+|.++|++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-~------~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-N------CPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-C------CSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-C------CCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999862 2 3689999999999999999999999875
No 34
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.41 E-value=4.6e-13 Score=107.29 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=64.3
Q ss_pred ceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhh
Q 009973 221 KVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296 (521)
Q Consensus 221 ~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~ 296 (521)
..+.+|.||.+++|+||||+|++|++|++.|||+|+|.+.++. ..++.+|.|+|+|+++++.+|+.+|.+++.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~--~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF--LPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCC--STTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCC--CCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999999999999874321 1245789999999999999999999998754
No 35
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.39 E-value=4.4e-13 Score=107.50 Aligned_cols=72 Identities=26% Similarity=0.467 Sum_probs=65.0
Q ss_pred CceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhh
Q 009973 220 GKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296 (521)
Q Consensus 220 ~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~ 296 (521)
..++.+|.||.+++|+||||+|++|++|+++|||+|+|... . .++.+|.|+|+|++++|.+|+.+|.+++.+
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--~---~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP--V---EGSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC--C---TTCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC--C---CCCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 35789999999999999999999999999999999999862 2 246789999999999999999999999865
No 36
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.39 E-value=6.2e-13 Score=108.23 Aligned_cols=73 Identities=23% Similarity=0.447 Sum_probs=64.7
Q ss_pred CceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhhh
Q 009973 220 GKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKF 297 (521)
Q Consensus 220 ~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 297 (521)
..++.+|.||.+++|+||||+|++|++|+++|||+|+|.+. . .++.+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~--~---~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP--V---EGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC--C---TTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC--C---CCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 46889999999999999999999999999999999999862 1 2457899999999999999999999998763
No 37
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.35 E-value=1.2e-12 Score=107.71 Aligned_cols=74 Identities=20% Similarity=0.336 Sum_probs=65.5
Q ss_pred eEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhhh
Q 009973 222 VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKF 297 (521)
Q Consensus 222 ~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 297 (521)
++.+|.||..++|+||||+|++|++|++.|||+|+|.+.++. ..++.+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~--~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF--LPGTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCB--STTSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCC--CCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999874321 12457899999999999999999999999874
No 38
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.35 E-value=1.6e-12 Score=108.55 Aligned_cols=75 Identities=20% Similarity=0.289 Sum_probs=66.9
Q ss_pred ccceEEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccCC
Q 009973 399 ITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAAP 475 (521)
Q Consensus 399 ~~~~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~VtI~Gt~e~V~~A~~lI~~~i~~~~~~ 475 (521)
..+++.+|.||.+++|.|||++|.+|++|++.|||+|+|++.. ..++.|+|+|++++++.|+.+|.+++.+....
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~--~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~~~ 88 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD--DPSNQIKITGTKEGIEKARHEVLLISAEQDKR 88 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT--SSCCEEEEEECHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC--CCCCeEEEEECHHHHHHHHHHHHHHhhccccc
Confidence 3568999999999999999999999999999999999998643 23578999999999999999999999887654
No 39
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.34 E-value=1.2e-12 Score=108.11 Aligned_cols=74 Identities=26% Similarity=0.539 Sum_probs=66.6
Q ss_pred CCceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhhh
Q 009973 219 GGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKF 297 (521)
Q Consensus 219 ~~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 297 (521)
...++.+|.||.+++|+||||+|++||+|+++|||+|+|... .| .+.+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~--~~---~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC--CS---SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC--CC---CCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 457899999999999999999999999999999999999752 22 357899999999999999999999999874
No 40
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.34 E-value=3.3e-12 Score=104.64 Aligned_cols=73 Identities=27% Similarity=0.489 Sum_probs=64.4
Q ss_pred CceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHh
Q 009973 220 GKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLR 295 (521)
Q Consensus 220 ~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~ 295 (521)
...+.+|.||.+++|+||||+|++||+|+++|||+|.|.. +..+ ....+|.|+|+|+++++.+|+.+|.++++
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~-~~~~--~~~~er~v~I~G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQ-DGSQ--NTNVDKPLRIIGDPYKVQQACEMVMDILR 84 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECS-SSCS--STTSCEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcC-CCCC--CCCCceEEEEEeCHHHHHHHHHHHHHHhc
Confidence 4578899999999999999999999999999999999987 3221 23578999999999999999999999875
No 41
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.1e-12 Score=106.84 Aligned_cols=70 Identities=29% Similarity=0.505 Sum_probs=63.2
Q ss_pred CCceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhh
Q 009973 219 GGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296 (521)
Q Consensus 219 ~~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~ 296 (521)
....+.+|.||.+++|+||||+|++||+|+++|||+|+|++.+ +++.|+|+|++++|++|+.+|.+++..
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~--------~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD--------KEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS--------SCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC--------CCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 4568999999999999999999999999999999999998622 368999999999999999999998753
No 42
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.34 E-value=1.9e-12 Score=107.65 Aligned_cols=74 Identities=22% Similarity=0.359 Sum_probs=66.2
Q ss_pred CCceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhhh
Q 009973 219 GGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKF 297 (521)
Q Consensus 219 ~~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 297 (521)
...++.+|.||.+++|+||||+|++|++|+++|||+|+|.... + +..+|.|+|+|++++|.+|+.+|.+++++.
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~--~---g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS--G---GLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC--T---TCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC--C---CCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 3468999999999999999999999999999999999998632 1 346899999999999999999999999864
No 43
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.34 E-value=2.8e-12 Score=107.24 Aligned_cols=76 Identities=20% Similarity=0.286 Sum_probs=67.6
Q ss_pred cccceEEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccC
Q 009973 398 MITQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAA 474 (521)
Q Consensus 398 ~~~~~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~VtI~Gt~e~V~~A~~lI~~~i~~~~~ 474 (521)
+...++.+|.||.+++|+|||++|++|++|++.|||+|+|++... ..++.|+|+|++++|+.|+.+|.+++.+..+
T Consensus 13 l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~-~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 13 LEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA-PDPNCVTVTGLPENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp TTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC-SCTTEEEEESCHHHHHHHHHHHHHHHHHHHT
T ss_pred hcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC-CCCcEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999976432 3467899999999999999999999987765
No 44
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.33 E-value=2.5e-12 Score=109.92 Aligned_cols=72 Identities=19% Similarity=0.359 Sum_probs=63.8
Q ss_pred EEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhh
Q 009973 223 STKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296 (521)
Q Consensus 223 t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~ 296 (521)
+.+|+||.+++|+||||+|++||+|+++|||+|+|.+. ..+ .....+|.|+|+|+.++|.+|+.+|.+++.+
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~-~~~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQ-LPP-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEG 79 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCC-CCT-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCS
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCc-cCC-CCCCCceEEEEECCHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999999999873 222 1234679999999999999999999999875
No 45
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.31 E-value=3.6e-12 Score=106.99 Aligned_cols=74 Identities=18% Similarity=0.307 Sum_probs=65.6
Q ss_pred cceEEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCC-CCCceEEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009973 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRG-VPGEMTVEISGTASQVQTAQQLIQNFMAEAA 473 (521)
Q Consensus 400 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~-~~~er~VtI~Gt~e~V~~A~~lI~~~i~~~~ 473 (521)
..++..|.||.+++|+|||++|++|++|++.|||+|+|++... ...++.|+|+|++++++.|+.+|..++.+..
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~e 89 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGELE 89 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999987532 2257899999999999999999999987654
No 46
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.31 E-value=1.8e-12 Score=102.43 Aligned_cols=68 Identities=21% Similarity=0.302 Sum_probs=61.0
Q ss_pred cceEEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCCCCCceEEEEEcCHHHHHHHHHHHHHHH
Q 009973 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFM 469 (521)
Q Consensus 400 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~VtI~Gt~e~V~~A~~lI~~~i 469 (521)
...+.+|.||.+++|.|||++|++|++|++.|||+|.|+++. ..++.|+|+|++++++.|+.+|.+++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g--~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS--EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC--SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC--CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 346788999999999999999999999999999999998743 35689999999999999999998753
No 47
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.31 E-value=2.6e-12 Score=107.29 Aligned_cols=75 Identities=28% Similarity=0.473 Sum_probs=66.1
Q ss_pred CCceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhh
Q 009973 219 GGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296 (521)
Q Consensus 219 ~~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~ 296 (521)
...++.+|+||..++|+||||+|++||+|+++|||+|+|.+. ..+. ...+|.|+|+|++++|.+|+.+|.+++++
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~-~~~~--~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQD-GPQN--TGADKPLRITGDPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCS-CCCS--SCSCEEEEEEECTTTHHHHHHHHHHHHCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCC-CCCC--CCCceEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 356899999999999999999999999999999999999863 2211 24689999999999999999999999975
No 48
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.29 E-value=4.9e-12 Score=107.79 Aligned_cols=72 Identities=18% Similarity=0.372 Sum_probs=63.4
Q ss_pred ceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhhh
Q 009973 221 KVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKF 297 (521)
Q Consensus 221 ~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 297 (521)
..+++|.||.+++++||||+|++||+|+++|||+|+|.+.+ + ...+|.|+|+|++++|++|+.+|.+++.+.
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~--~---~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G---TGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC--S---SSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC--C---CCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 34789999999999999999999999999999999998622 1 246899999999999999999999999864
No 49
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.26 E-value=2.9e-12 Score=131.35 Aligned_cols=204 Identities=12% Similarity=0.117 Sum_probs=132.0
Q ss_pred ccccccc--ccccccccCCCCCCCCCCCCCC-------cCccccCCCCCCCCCccchhhhhhhhhcccccCCCCCCCCCC
Q 009973 56 SQVTKEQ--VTEDQLTEDQVPEDHVPEDQVP-------EDHVPEDQVPEDIVPEDSQLQEKQENEVNLAVGSTEKKWPGW 126 (521)
Q Consensus 56 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~p~~ 126 (521)
-+++|.| ...+++++|+.-.++.|+...+ ...|+++ +..++++...+..++. -|
T Consensus 43 ~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtIt-----G~~enVE~AR~~I~~l----------~P-- 105 (376)
T 3n89_A 43 LMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTIT-----GYFGDVDRARMLMRRN----------CH-- 105 (376)
T ss_dssp HHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEE-----EEHHHHHHHHHHHHHS----------CE--
T ss_pred hhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEE-----cCHHHHHHHHHHHHhc----------CC--
Confidence 4799999 9999999999999999876521 1123333 2233333333333331 11
Q ss_pred CCceEEEEEeeccccccccccCchHHHHHHhhcCcEEEEeCCC--CCCCccEEEEeccCCCCCCchhHHHHHHHHhhhhh
Q 009973 127 PGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGP--PGTTERAVMISAKEEPESSLPPAMDGLLRVHKRIV 204 (521)
Q Consensus 127 ~~~~~~rllVP~~~vG~IIGKgG~~Ik~I~e~Tga~I~i~~~~--~~~~er~v~I~G~~e~~~~a~~a~~~l~~~~~~i~ 204 (521)
+++.+-+|...+.. ..-+..|.+ ++..+++|.|+... .+.....|+|+|.+.+++. +.+++..+.+.+.
T Consensus 106 ---l~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~nv~~---akeA~~~Ll~~l~ 176 (376)
T 3n89_A 106 ---FTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQHE---LIEAAKRLNEILF 176 (376)
T ss_dssp ---EEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-----CEEEEEEEEEGGGHHH---HHHHHHHHHHHHC
T ss_pred ---ceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCcccccCCCCCEEEEEcChhhHHH---HHHHHHHHHHHHH
Confidence 55666666544332 222345655 67899999996431 1123567999998875443 3444444444543
Q ss_pred cCCCCCCCCCCCCCCCceEEEEEeccccccccccCCc--hhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHH
Q 009973 205 DGLDSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQG--GTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASG 282 (521)
Q Consensus 205 ~~l~~~~~~~~~~~~~~~t~~l~VP~~~vG~IIGk~G--~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~ 282 (521)
+.. . .....++..+.|+..++..||||+| ..|++|+++|||+|.++..++ +.........|+|+|+.++
T Consensus 177 ~~e--~------~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d-~~d~~~~~~~ItItGs~e~ 247 (376)
T 3n89_A 177 RES--P------APENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNN-RNETRGNIYEIKVVGNIDN 247 (376)
T ss_dssp C----C------CCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC----------CCEEEEEEESCHHH
T ss_pred hhh--c------ccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCC-cccccCCceEEEEEeCHHH
Confidence 320 0 0124578999999999999999998 667999999999999986433 1111124578999999999
Q ss_pred HHHHHHHHHHHH
Q 009973 283 VHKAMELIGSHL 294 (521)
Q Consensus 283 V~~A~~~I~~~l 294 (521)
|.+|+.+|.++|
T Consensus 248 V~~Ark~I~~lL 259 (376)
T 3n89_A 248 VLKARRYIMDLL 259 (376)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHhhC
Confidence 999999999977
No 50
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.25 E-value=1.2e-11 Score=105.20 Aligned_cols=75 Identities=27% Similarity=0.360 Sum_probs=65.6
Q ss_pred CceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhhh
Q 009973 220 GKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKF 297 (521)
Q Consensus 220 ~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 297 (521)
...+.+|.||.+++|+||||+|++||+|+++|||+|+|.+... . ....+|.|+|+|+.++|.+|+.+|.+++.+.
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~-~--~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE-G--TLLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSC-C--SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCC-C--CCCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 4578999999999999999999999999999999999986322 1 1235899999999999999999999999764
No 51
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.22 E-value=1.8e-11 Score=102.26 Aligned_cols=75 Identities=20% Similarity=0.282 Sum_probs=66.3
Q ss_pred CCceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhhhc
Q 009973 219 GGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKFL 298 (521)
Q Consensus 219 ~~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~~ 298 (521)
...++..|.||.++++.|||++|++|++|+++|||+|+|+...+ ..++.|+|+|.+++|.+|+.+|..++.++.
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~ 87 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA------PDPNCVTVTGLPENVEEAIDHILNLEEEYL 87 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC------SCTTEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC------CCCcEEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999986321 246899999999999999999999998764
Q ss_pred c
Q 009973 299 V 299 (521)
Q Consensus 299 ~ 299 (521)
.
T Consensus 88 ~ 88 (95)
T 2ctm_A 88 A 88 (95)
T ss_dssp T
T ss_pred H
Confidence 3
No 52
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.22 E-value=1.4e-11 Score=97.30 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=60.8
Q ss_pred CceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHH
Q 009973 220 GKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHL 294 (521)
Q Consensus 220 ~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l 294 (521)
...+..|.||.+++|.|||++|++|++|+++|||+|.|+.. . ..+|.|+|+|+.+++.+|+.+|..++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~-g------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPD-S------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCC-C------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCC-C------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 35788999999999999999999999999999999999862 2 25689999999999999999998764
No 53
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.20 E-value=2.3e-11 Score=101.55 Aligned_cols=71 Identities=14% Similarity=0.281 Sum_probs=63.9
Q ss_pred CceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhhh
Q 009973 220 GKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKF 297 (521)
Q Consensus 220 ~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 297 (521)
..++.+|.||.+++|.|||++|.+||+|+++|||+|+|+..+ ..++.|+|+|++++|.+|+.+|..++.+.
T Consensus 15 ~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 15 TQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------DPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp SCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-------SSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-------CCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 468999999999999999999999999999999999998622 13589999999999999999999999764
No 54
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.20 E-value=1.8e-11 Score=104.05 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=63.4
Q ss_pred ceEEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhcc
Q 009973 401 QVTQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAA 473 (521)
Q Consensus 401 ~~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~VtI~Gt~e~V~~A~~lI~~~i~~~~ 473 (521)
..+.+|.||.+++|+|||++|++|++|++.|||+|.|++... ..+.|+|+|++++++.|+.+|.+++.+..
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~--~~~~V~I~G~~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL--QSDIIAITGLAANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT--TCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCC--CcceEEEEcCHHHHHHHHHHHHHHHhhHH
Confidence 368899999999999999999999999999999999987433 34689999999999999999999987643
No 55
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.19 E-value=3.9e-11 Score=100.61 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=64.1
Q ss_pred ceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhh
Q 009973 221 KVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296 (521)
Q Consensus 221 ~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~ 296 (521)
..+..|.||..+++.|||++|++|++|+++|||+|.|++..+ | ...+|.|+|+|+.+++.+|+.+|..++.+
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~-~---~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD-G---NQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT-C---SSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC-C---CCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999987322 2 13679999999999999999999999876
No 56
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.12 E-value=1.5e-10 Score=96.64 Aligned_cols=76 Identities=24% Similarity=0.367 Sum_probs=67.3
Q ss_pred CcccceEEEEEecCCCccceecCCCchHHHHHHHh-CCeEEEccCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccC
Q 009973 397 SMITQVTQQMQIPLSYADAVIGTAGASISYIRRSS-GATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAA 474 (521)
Q Consensus 397 ~~~~~~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~S-GA~I~I~~~~~~~~er~VtI~Gt~e~V~~A~~lI~~~i~~~~~ 474 (521)
.+...++..|.||.++++.|||++|.+|++|+++| ||+|.|++. +...+.|+|+|+.+++++|+.+|++++.+...
T Consensus 12 e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~--g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~e~ 88 (95)
T 2ctj_A 12 DLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE--GSGSDTVVIRGPSSDVEKAKKQLLHLAEEKQT 88 (95)
T ss_dssp CCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT--TTTCCEEEEESCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC--CCCcceEEEEcCHHHHHHHHHHHHHHHhhhhh
Confidence 34567889999999999999999999999999999 999999764 34567899999999999999999999987654
No 57
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.09 E-value=8e-11 Score=99.57 Aligned_cols=67 Identities=16% Similarity=0.268 Sum_probs=60.8
Q ss_pred ceEEEEEeccccccccccCCchhHHHHHHH-hcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhhh
Q 009973 221 KVSTKLLVPASQAGSLIGKQGGTVKSIQEA-SNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKF 297 (521)
Q Consensus 221 ~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~-tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 297 (521)
.++.+|.||..+++.|||++|++|++|+++ ++++|.|+. .++.|+|+|+++.|.+|+.+|..++++.
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~----------~~~~ItI~G~~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE----------GEDKITLEGPTEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS----------SSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC----------CCCEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999997 599999875 3579999999999999999999999763
No 58
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.09 E-value=1.6e-10 Score=97.77 Aligned_cols=68 Identities=19% Similarity=0.366 Sum_probs=61.6
Q ss_pred eEEEEEecCCCccceecCCCchHHHHHHH-hCCeEEEccCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccC
Q 009973 402 VTQQMQIPLSYADAVIGTAGASISYIRRS-SGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAA 474 (521)
Q Consensus 402 ~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~-SGA~I~I~~~~~~~~er~VtI~Gt~e~V~~A~~lI~~~i~~~~~ 474 (521)
++.+|.||..+++.|||++|++|++|++. ++++|.|++ .++.|+|+|++++|+.|+.+|+.++.+...
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-----~~~~ItI~G~~~~V~~a~~~I~~~v~el~~ 95 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-----GEDKITLEGPTEDVSVAQEQIEGMVKDLIN 95 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS-----SSCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-----CCCEEEEECCHHHHHHHHHHHHHHHHHHHh
Confidence 68899999999999999999999999997 599999987 346899999999999999999999987543
No 59
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.08 E-value=1.7e-10 Score=98.00 Aligned_cols=70 Identities=16% Similarity=0.322 Sum_probs=62.7
Q ss_pred ceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhhh
Q 009973 221 KVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKF 297 (521)
Q Consensus 221 ~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 297 (521)
..+..|.||.+++|.|||++|++|++|+++|||+|.|+... ...+.|+|+|+.+++.+|+.+|..++.+.
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-------LQSDIIAITGLAANLDRAKAGLLERVKEL 85 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-------TTCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHhhH
Confidence 46889999999999999999999999999999999998621 13469999999999999999999998764
No 60
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.96 E-value=1e-09 Score=91.48 Aligned_cols=72 Identities=22% Similarity=0.272 Sum_probs=64.4
Q ss_pred CCceEEEEEeccccccccccCCchhHHHHHHHh-cccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhhh
Q 009973 219 GGKVSTKLLVPASQAGSLIGKQGGTVKSIQEAS-NCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKF 297 (521)
Q Consensus 219 ~~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~t-Ga~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 297 (521)
++.++..|.||..+++.|||++|.+|++|+++| ||+|.|+.. . +..+.|+|+|+.++|.+|+.+|..++.+.
T Consensus 14 ~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~-g------~~~~~V~I~G~~~~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 14 ANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE-G------SGSDTVVIRGPSSDVEKAKKQLLHLAEEK 86 (95)
T ss_dssp CSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT-T------TTCCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred hhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC-C------CCcceEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 457799999999999999999999999999999 999999762 1 34679999999999999999999999763
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.85 E-value=2.6e-09 Score=87.75 Aligned_cols=68 Identities=22% Similarity=0.333 Sum_probs=59.9
Q ss_pred cceEEEEEecCCCccceecCCCchHHHHHHHhCCe-EEEccCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHHhc
Q 009973 400 TQVTQQMQIPLSYADAVIGTAGASISYIRRSSGAT-VTIQETRGVPGEMTVEISG-TASQVQTAQQLIQNFMAEA 472 (521)
Q Consensus 400 ~~~t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~-I~I~~~~~~~~er~VtI~G-t~e~V~~A~~lI~~~i~~~ 472 (521)
..+..+|.||.+++|.|||++|.+|++|++.|||+ |.|.+ .+.+|+|.| +.+++++|+.+|..+.+.-
T Consensus 13 ~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-----ddG~V~I~g~~~ea~~~A~~~I~~ie~~~ 82 (91)
T 2cpq_A 13 AAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE-----DTGTFRIYGESADAVKKARGFLEFVEDFI 82 (91)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHSCCCCCC
T ss_pred CceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-----CCCEEEEEECCHHHHHHHHHHHHhhheEE
Confidence 45788999999999999999999999999999998 99964 247899999 8999999999998665543
No 62
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.69 E-value=7.5e-09 Score=84.98 Aligned_cols=67 Identities=16% Similarity=0.262 Sum_probs=59.1
Q ss_pred CceEEEEEeccccccccccCCchhHHHHHHHhccc-EEEcCCCCCCcccCCCCeEEEEEc-CHHHHHHHHHHHHHHHhh
Q 009973 220 GKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCI-VRVLGAEDLPVFALQDDRVVEVVG-DASGVHKAMELIGSHLRK 296 (521)
Q Consensus 220 ~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~-I~i~~~~~~P~~~~~~er~V~I~G-~~~~V~~A~~~I~~~l~~ 296 (521)
..+...|.||.+.+|.+||++|.+|++|+++|||+ |.|.. ++..|+|.| +.+++.+|+.+|..+...
T Consensus 13 ~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e----------ddG~V~I~g~~~ea~~~A~~~I~~ie~~ 81 (91)
T 2cpq_A 13 AAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE----------DTGTFRIYGESADAVKKARGFLEFVEDF 81 (91)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET----------TTTEEEEEESSHHHHHHHHHHHSCCCCC
T ss_pred CceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc----------CCCEEEEEECCHHHHHHHHHHHHhhheE
Confidence 46788999999999999999999999999999998 99963 358999999 899999999999765443
No 63
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.61 E-value=7.1e-08 Score=85.01 Aligned_cols=73 Identities=22% Similarity=0.431 Sum_probs=61.8
Q ss_pred ccceEEEEEecCC------CccceecCCCchHHHHHHHhCCeEEEccCC----------------CCCCceEEEEEc-CH
Q 009973 399 ITQVTQQMQIPLS------YADAVIGTAGASISYIRRSSGATVTIQETR----------------GVPGEMTVEISG-TA 455 (521)
Q Consensus 399 ~~~~t~~i~VP~~------~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~----------------~~~~er~VtI~G-t~ 455 (521)
...++.+|.||.+ ++|+|||.+|.+||+|+++|||+|.|.... ....+-.|.|++ +.
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~ 83 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM 83 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH
Confidence 3578899999988 889999999999999999999999997521 112356899999 68
Q ss_pred HHHHHHHHHHHHHHHh
Q 009973 456 SQVQTAQQLIQNFMAE 471 (521)
Q Consensus 456 e~V~~A~~lI~~~i~~ 471 (521)
+.++.|+.+|..++..
T Consensus 84 e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 84 ENVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999975
No 64
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=1.9e-07 Score=80.69 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=58.9
Q ss_pred cceEEEEEecCC-------CccceecCCCchHHHHHHHhCCeEEEccCC----------CCCCceEEEEEc-CHHHHHHH
Q 009973 400 TQVTQQMQIPLS-------YADAVIGTAGASISYIRRSSGATVTIQETR----------GVPGEMTVEISG-TASQVQTA 461 (521)
Q Consensus 400 ~~~t~~i~VP~~-------~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~----------~~~~er~VtI~G-t~e~V~~A 461 (521)
...+.+|.||.+ ++|.|||++|.+||+|+++|||+|.|.... ....+-.|.|++ ++++++.|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 456778888865 679999999999999999999999997321 011345788886 69999999
Q ss_pred HHHHHHHHHhc
Q 009973 462 QQLIQNFMAEA 472 (521)
Q Consensus 462 ~~lI~~~i~~~ 472 (521)
+.||.+++...
T Consensus 90 ~~~Ie~Ll~~v 100 (119)
T 2yqr_A 90 KKLCENLLQTV 100 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhch
Confidence 99999999864
No 65
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.40 E-value=7.3e-07 Score=78.51 Aligned_cols=78 Identities=27% Similarity=0.390 Sum_probs=61.8
Q ss_pred CceEEEEEeccc------cccccccCCchhHHHHHHHhcccEEEcCCCCCC-----------cccCCCCeEEEEEc-CHH
Q 009973 220 GKVSTKLLVPAS------QAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLP-----------VFALQDDRVVEVVG-DAS 281 (521)
Q Consensus 220 ~~~t~~l~VP~~------~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P-----------~~~~~~er~V~I~G-~~~ 281 (521)
..++.+|.||.. ++|.|||.+|.+||+|+++|||+|.|....... ......+-.|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 367889999987 889999999999999999999999997632110 01122467888988 477
Q ss_pred HHHHHHHHHHHHHhhh
Q 009973 282 GVHKAMELIGSHLRKF 297 (521)
Q Consensus 282 ~V~~A~~~I~~~l~~~ 297 (521)
.+.+|+.+|..+|...
T Consensus 85 ~~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQG 100 (131)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 8999999999999763
No 66
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.30 E-value=2.4e-06 Score=73.84 Aligned_cols=77 Identities=18% Similarity=0.138 Sum_probs=57.8
Q ss_pred CceEEEEEeccc-------cccccccCCchhHHHHHHHhcccEEEcCCCCC---C--cccCCCCeEEEEEc-CHHHHHHH
Q 009973 220 GKVSTKLLVPAS-------QAGSLIGKQGGTVKSIQEASNCIVRVLGAEDL---P--VFALQDDRVVEVVG-DASGVHKA 286 (521)
Q Consensus 220 ~~~t~~l~VP~~-------~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~---P--~~~~~~er~V~I~G-~~~~V~~A 286 (521)
...+.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..+... + .....++-.|.|.+ +.+++.+|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 356778888865 78999999999999999999999999743110 0 00011344677764 58899999
Q ss_pred HHHHHHHHhh
Q 009973 287 MELIGSHLRK 296 (521)
Q Consensus 287 ~~~I~~~l~~ 296 (521)
+.+|.+++..
T Consensus 90 ~~~Ie~Ll~~ 99 (119)
T 2yqr_A 90 KKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999999976
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.05 E-value=3.9e-06 Score=74.36 Aligned_cols=70 Identities=11% Similarity=0.392 Sum_probs=54.5
Q ss_pred eEEEEEecCC------CccceecCCCchHHHHHHHhCCeEEEccCCC------------------CCCceEEEEEcC-HH
Q 009973 402 VTQQMQIPLS------YADAVIGTAGASISYIRRSSGATVTIQETRG------------------VPGEMTVEISGT-AS 456 (521)
Q Consensus 402 ~t~~i~VP~~------~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~------------------~~~er~VtI~Gt-~e 456 (521)
++.+|.||.+ ++|+|||.+|.++|+|++.|||+|.|...-. ...+--|.|++. ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 4567888855 4899999999999999999999999985321 112237889984 43
Q ss_pred -----HHHHHHHHHHHHHHh
Q 009973 457 -----QVQTAQQLIQNFMAE 471 (521)
Q Consensus 457 -----~V~~A~~lI~~~i~~ 471 (521)
.++.|+.+|..+|..
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHHHHCCC
Confidence 799999999998863
No 68
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.90 E-value=1.6e-05 Score=70.50 Aligned_cols=74 Identities=27% Similarity=0.499 Sum_probs=54.7
Q ss_pred eEEEEEecccc------ccccccCCchhHHHHHHHhcccEEEcCCCCC------------Cccc-CCCCeEEEEEcC-HH
Q 009973 222 VSTKLLVPASQ------AGSLIGKQGGTVKSIQEASNCIVRVLGAEDL------------PVFA-LQDDRVVEVVGD-AS 281 (521)
Q Consensus 222 ~t~~l~VP~~~------vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~------------P~~~-~~~er~V~I~G~-~~ 281 (521)
++.++.||... +|.|||.+|.++|.|+++|||+|.|..+... |... ...+--|.|++. ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 45678888554 8999999999999999999999999874311 1100 122337778884 33
Q ss_pred -----HHHHHHHHHHHHHh
Q 009973 282 -----GVHKAMELIGSHLR 295 (521)
Q Consensus 282 -----~V~~A~~~I~~~l~ 295 (521)
.+.+|+.+|..+|.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 78999999999885
No 69
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.86 E-value=3.1e-05 Score=67.37 Aligned_cols=68 Identities=7% Similarity=0.147 Sum_probs=60.4
Q ss_pred EEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhc
Q 009973 404 QQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEA 472 (521)
Q Consensus 404 ~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~VtI~Gt~e~V~~A~~lI~~~i~~~ 472 (521)
.-+.|....+++|||++|+.|++|+..|.|.|+|..-.. ++...|+|.|++..-..|+.+|+++.+..
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s-~g~tEVtIfG~~~~Q~rak~MI~sLA~~h 125 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP-ERRAEIWIFGPPPFRRDVDRMLTDLAHYC 125 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT-TSCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC-CCcEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 447889999999999999999999999999999987643 46788999999999999999999877643
No 70
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.78 E-value=2.7e-05 Score=85.44 Aligned_cols=63 Identities=21% Similarity=0.357 Sum_probs=54.1
Q ss_pred ceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcC-HHHHHHHHHHHHHHH
Q 009973 221 KVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGD-ASGVHKAMELIGSHL 294 (521)
Q Consensus 221 ~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~-~~~V~~A~~~I~~~l 294 (521)
.....+.||.+.++.|||++|++||.|+++|||+|.|.. +..|.|.++ .+.+.+|+.+|..++
T Consensus 566 p~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d-----------~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 566 PVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD-----------EETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp CEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS-----------SSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC-----------CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 457789999999999999999999999999999999963 478999887 578999999987654
No 71
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.72 E-value=3.8e-05 Score=68.39 Aligned_cols=102 Identities=23% Similarity=0.311 Sum_probs=72.6
Q ss_pred eEEEEEeeccccccccccCchHHHHHHhhcCcEEEEeCCCCCCCccEEEEeccCCCCCCchhHHHHHHHHhh--hhhcCC
Q 009973 130 SVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHK--RIVDGL 207 (521)
Q Consensus 130 ~~~rllVP~~~vG~IIGKgG~~Ik~I~e~Tga~I~i~~~~~~~~er~v~I~G~~e~~~~a~~a~~~l~~~~~--~i~~~l 207 (521)
-.+.++|+...+|..||++|++|+.|+++.|-+|.|-....+ ++ .-+..++. .+.. +
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~d-----------~~---------~fI~naLsPA~V~~-V 94 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSD-----------LE---------RIVKNLFPGVKIES-I 94 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSS-----------HH---------HHHHHHSTTSCEEE-E
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCCC-----------HH---------HHHHHhcCCceEEE-E
Confidence 468999999999999999999999999999999998753211 00 00111000 0000 0
Q ss_pred CCCCCCCCCCCCCceEEEEEeccccccccccCCchhHHHHHHHhcccEEEc
Q 009973 208 DSDSSHAPSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVL 258 (521)
Q Consensus 208 ~~~~~~~~~~~~~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~ 258 (521)
.-. ..+......+.||.+..+..|||+|.+++-..+.||.+|.|.
T Consensus 95 ~i~------~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 95 NVR------ERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EEE------EETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred EEe------ecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 000 001245678899999999999999999999999999988774
No 72
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.54 E-value=0.00021 Score=62.11 Aligned_cols=69 Identities=10% Similarity=0.126 Sum_probs=61.2
Q ss_pred EEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhhh
Q 009973 223 STKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRKF 297 (521)
Q Consensus 223 t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~~ 297 (521)
...+.|....++.|+|++|+.|+.|+..|++.|+|..- + .+..-.|+|.|++..-.+|+.+|..+..-+
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~-~-----s~g~tEVtIfG~~~~Q~rak~MI~sLA~~h 125 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVW-G-----PERRAEIWIFGPPPFRRDVDRMLTDLAHYC 125 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECC-C-----TTSCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEecc-C-----CCCcEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999863 2 135788999999999999999999988654
No 73
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.50 E-value=3.3e-05 Score=84.68 Aligned_cols=61 Identities=21% Similarity=0.420 Sum_probs=53.4
Q ss_pred EEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCCCCCceEEEEEcC-HHHHHHHHHHHHHHH
Q 009973 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGT-ASQVQTAQQLIQNFM 469 (521)
Q Consensus 403 t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~VtI~Gt-~e~V~~A~~lI~~~i 469 (521)
...|.||.+++|.|||+||.+||.|++.|||+|.|.+ +..|.|.|+ .+.++.|+.+|.+++
T Consensus 568 ~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d------~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 568 VETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD------EETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS------SSEEEEEESSHHHHHHHHHHTTC--
T ss_pred EEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC------CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 5679999999999999999999999999999999974 357999996 689999999998765
No 74
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.93 E-value=0.00038 Score=77.23 Aligned_cols=64 Identities=20% Similarity=0.345 Sum_probs=11.3
Q ss_pred eEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcC-HHHHHHHHHHHHHHHhh
Q 009973 222 VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGD-ASGVHKAMELIGSHLRK 296 (521)
Q Consensus 222 ~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~-~~~V~~A~~~I~~~l~~ 296 (521)
....+.||.+.++.|||++|.+||.|.++||++|.|.. +..|.|.+. .+++.+|+.+|..++.+
T Consensus 570 ~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d-----------dG~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 570 KIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND-----------DGVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp C------------------------------------------------------CCSCHHHHHHHHHC-------
T ss_pred eEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC-----------CceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 46678999999999999999999999999999998863 466777665 77899999999988765
No 75
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=96.91 E-value=0.0004 Score=61.77 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=35.0
Q ss_pred eEEEEEeccccccccccCCchhHHHHHHHhcccEEEcC
Q 009973 222 VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLG 259 (521)
Q Consensus 222 ~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~ 259 (521)
-...++|+...+|..||++|++|+.|+++.|-+|.|..
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~ 73 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVE 73 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEE
Confidence 47789999999999999999999999999999998875
No 76
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.78 E-value=0.00092 Score=74.22 Aligned_cols=64 Identities=28% Similarity=0.475 Sum_probs=11.5
Q ss_pred EEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHHhc
Q 009973 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGT-ASQVQTAQQLIQNFMAEA 472 (521)
Q Consensus 403 t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~VtI~Gt-~e~V~~A~~lI~~~i~~~ 472 (521)
...+.||.++++.|||+||.+||.|.+.||++|.|.+ +..|.|.++ .++++.|+.+|..++.+.
T Consensus 571 ~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d------dG~v~I~~~~~~~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 571 IETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND------DGVVKVSASDGAKIKAAIDWIKSITDEA 635 (726)
T ss_dssp -------------------------------------------------CCSCHHHHHHHHHC--------
T ss_pred EEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC------CceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 3458899999999999999999999999999999964 245888775 889999999999988654
No 77
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.12 E-value=0.0098 Score=57.41 Aligned_cols=93 Identities=18% Similarity=0.267 Sum_probs=64.1
Q ss_pred cccccccccCchHHHHH-HhhcCcEEEEeCCCCCCCccEEEEeccCCCCCCchhHHHHHHHHhh--hhhcCCCCCCCCCC
Q 009973 139 QKVGSIIGRKGEFIKKI-VEETRARIKILDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHK--RIVDGLDSDSSHAP 215 (521)
Q Consensus 139 ~~vG~IIGKgG~~Ik~I-~e~Tga~I~i~~~~~~~~er~v~I~G~~e~~~~a~~a~~~l~~~~~--~i~~~l~~~~~~~~ 215 (521)
+-+|..||++|++|+.| ++-.|-+|.|-....+ ++ .-+..++. .+....-.
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-----------p~---------~fi~nalsPA~V~~V~i~------ 179 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-----------PA---------RFVANALSPAKVVSVSVI------ 179 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-----------HH---------HHHHHHTTTSCCSEEEEE------
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecCC-----------HH---------HHHHhccCCcceEEEEEE------
Confidence 45999999999999999 7888999998753211 00 00111100 00000000
Q ss_pred CCCCCceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcC
Q 009973 216 SGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLG 259 (521)
Q Consensus 216 ~~~~~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~ 259 (521)
........+.||..+.+..|||+|.+++-..+.||.+|.|..
T Consensus 180 --~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 221 (251)
T 2asb_A 180 --DQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 221 (251)
T ss_dssp --ETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred --cCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceE
Confidence 011246789999999999999999999999999999999975
No 78
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.98 E-value=0.007 Score=61.67 Aligned_cols=91 Identities=20% Similarity=0.333 Sum_probs=64.8
Q ss_pred cccccccccCchHHHHHHhhc-CcEEEEeCCCCCCCccEEEEeccCCCCCCchhHHHHHHHHhh--hhhc--CCCCCCCC
Q 009973 139 QKVGSIIGRKGEFIKKIVEET-RARIKILDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHK--RIVD--GLDSDSSH 213 (521)
Q Consensus 139 ~~vG~IIGKgG~~Ik~I~e~T-ga~I~i~~~~~~~~er~v~I~G~~e~~~~a~~a~~~l~~~~~--~i~~--~l~~~~~~ 213 (521)
+-+|..||++|++|+.|.++. |-+|.|-....+ + ..-+..++. .+.. .+.
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-----------p---------~~fi~nalsPA~V~~V~~~~----- 303 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-----------P---------ARFVANALSPAKVVSVSVID----- 303 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-----------H---------HHHHHHHTTTSCCSEEEEEE-----
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcCCC-----------H---------HHHHHHhcCCcceeEEEEEc-----
Confidence 469999999999999999998 889998753211 0 000111100 0000 000
Q ss_pred CCCCCCCceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcC
Q 009973 214 APSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLG 259 (521)
Q Consensus 214 ~~~~~~~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~ 259 (521)
.......+.||....+..|||+|.+++-..+.||.+|.|..
T Consensus 304 -----~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 344 (366)
T 1k0r_A 304 -----QTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 344 (366)
T ss_dssp -----TTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEE
T ss_pred -----CCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeE
Confidence 11346789999999999999999999999999999999975
No 79
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=94.47 E-value=0.04 Score=55.82 Aligned_cols=92 Identities=17% Similarity=0.296 Sum_probs=63.7
Q ss_pred cccccccccCchHHHHHHhhc-CcEEEEeCCCCCCCccEEEEeccCCCCCCchhHHHHHHHHhh--hhhcC-CCCCCCCC
Q 009973 139 QKVGSIIGRKGEFIKKIVEET-RARIKILDGPPGTTERAVMISAKEEPESSLPPAMDGLLRVHK--RIVDG-LDSDSSHA 214 (521)
Q Consensus 139 ~~vG~IIGKgG~~Ik~I~e~T-ga~I~i~~~~~~~~er~v~I~G~~e~~~~a~~a~~~l~~~~~--~i~~~-l~~~~~~~ 214 (521)
+-+|..||.+|.+|+.|.++. |-+|.|-....+ + ..-+..++. .+... +.
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s~d-----------~---------~~fi~nal~Pa~v~~v~~~------ 298 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDD-----------P---------KQLIANALAPATVIEVEIL------ 298 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECCSS-----------H---------HHHHHHHTCSSCCSEEEEE------
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecCCC-----------H---------HHHHHHhcCccEEEEEEEE------
Confidence 458999999999999999988 778888643211 0 000111100 00000 00
Q ss_pred CCCCCCceEEEEEeccccccccccCCchhHHHHHHHhcccEEEcC
Q 009973 215 PSGTGGKVSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLG 259 (521)
Q Consensus 215 ~~~~~~~~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~ 259 (521)
........+.||..+.+..|||+|.+++--.+.||.+|.|..
T Consensus 299 ---d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 299 ---DKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp ---ETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred ---cCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 012346789999999999999999999999999999999864
No 80
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=94.22 E-value=0.043 Score=52.94 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=35.4
Q ss_pred EEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccC
Q 009973 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQET 440 (521)
Q Consensus 403 t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~ 440 (521)
+..+.||.+..+.-|||+|.||+-..+.||.+|.|...
T Consensus 185 ~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 185 AARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp EEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred EEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 57799999999999999999999999999999999754
No 81
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=93.97 E-value=0.06 Score=54.81 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=35.4
Q ss_pred EEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccC
Q 009973 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQET 440 (521)
Q Consensus 403 t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~ 440 (521)
...+.||.+..+..|||+|.|++-..+.||.+|.|...
T Consensus 308 ~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 308 AARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp EEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred EEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 67899999999999999999999999999999999754
No 82
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=92.77 E-value=0.033 Score=62.04 Aligned_cols=63 Identities=14% Similarity=0.291 Sum_probs=0.0
Q ss_pred eEEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcC-HHHHHHHHHHHHHHHh
Q 009973 222 VSTKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGD-ASGVHKAMELIGSHLR 295 (521)
Q Consensus 222 ~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~-~~~V~~A~~~I~~~l~ 295 (521)
....+.||.+.++.+||++|.+|+.|.++||+.|.|.. +..|.|.+. .+.+.+|..+|..++.
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~-----------dg~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED-----------DGTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEecC-----------CccEEEecCCHHHHHHHHHHHHHHhh
Confidence 45678899999999999999999999999999998753 356666654 5567788877776654
No 83
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=91.46 E-value=0.035 Score=61.76 Aligned_cols=63 Identities=27% Similarity=0.438 Sum_probs=0.0
Q ss_pred EEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHHh
Q 009973 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGT-ASQVQTAQQLIQNFMAE 471 (521)
Q Consensus 403 t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~VtI~Gt-~e~V~~A~~lI~~~i~~ 471 (521)
...+.||.++++.|||++|.+|+.|.+.+|+.|.|.+ +..|.|.+. .+.++.|..+|..++.+
T Consensus 561 ~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~------dg~v~I~~~~~~~~~~a~~~i~~i~~~ 624 (723)
T 3cdi_A 561 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED------DGTVKIAATDGEKAKHAIRRIEEITAE 624 (723)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEEEECHHHhcccccccceeeeeeehhhCceEEecC------CccEEEecCCHHHHHHHHHHHHHHhhh
Confidence 3458899999999999999999999999999998865 345777764 56778888888776543
No 84
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=91.01 E-value=0.2 Score=50.69 Aligned_cols=37 Identities=16% Similarity=0.341 Sum_probs=34.6
Q ss_pred EEEEEecCCCccceecCCCchHHHHHHHhCCeEEEcc
Q 009973 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQE 439 (521)
Q Consensus 403 t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~ 439 (521)
+..+.||.+..+.-|||+|.|++-..+.||.+|.|..
T Consensus 304 ~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 304 AARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp EEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred EEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 6779999999999999999999999999999999854
No 85
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=89.18 E-value=0.037 Score=61.83 Aligned_cols=61 Identities=16% Similarity=0.277 Sum_probs=19.7
Q ss_pred EEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcC-HHHHHHHHHHHHHHH
Q 009973 223 STKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGD-ASGVHKAMELIGSHL 294 (521)
Q Consensus 223 t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~-~~~V~~A~~~I~~~l 294 (521)
...+.||.+.++.+||++|.+||.|.++||+.|.|.. +..|.|... .....+|+..|..+.
T Consensus 599 ~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~-----------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 599 IITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED-----------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CCCC------------------CTTCCCCCSCC-------------------CCCBSSHHHHCC---------
T ss_pred eEEEEEChHHeehcccccceeeehhhHhhCCEEEecC-----------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 3467899999999999999999999999999998863 355666654 556666766666554
No 86
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=88.71 E-value=0.023 Score=63.57 Aligned_cols=59 Identities=25% Similarity=0.441 Sum_probs=19.8
Q ss_pred EEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCCCCCceEEEEEcC-HHHHHHHHHHHHHHH
Q 009973 405 QMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGT-ASQVQTAQQLIQNFM 469 (521)
Q Consensus 405 ~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~VtI~Gt-~e~V~~A~~lI~~~i 469 (521)
.+.||.+++|.|||++|.+||.|.+.+|+.|.|.+ +..|.|+.. .+..+.|+.+|..+.
T Consensus 601 ~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 601 TVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CC------------------CTTCCCCCSCC--------------CCCBSSHHHHCC---------
T ss_pred EEEEChHHeehcccccceeeehhhHhhCCEEEecC------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 37799999999999999999999999999999964 356888774 567777877777665
No 87
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=71.22 E-value=2.5 Score=37.57 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=25.1
Q ss_pred EEEEEeeccccccccccCchHHHHHHhhc
Q 009973 131 VFRMLVPAQKVGSIIGRKGEFIKKIVEET 159 (521)
Q Consensus 131 ~~rllVP~~~vG~IIGKgG~~Ik~I~e~T 159 (521)
++.+-+-.+..|.||||.|.|++.||--+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~ 62 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLL 62 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHH
Confidence 57777788999999999999999999544
No 88
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=70.63 E-value=2 Score=34.88 Aligned_cols=28 Identities=18% Similarity=0.430 Sum_probs=24.5
Q ss_pred EEEEEeeccccccccccCchHHHHHHhh
Q 009973 131 VFRMLVPAQKVGSIIGRKGEFIKKIVEE 158 (521)
Q Consensus 131 ~~rllVP~~~vG~IIGKgG~~Ik~I~e~ 158 (521)
.+++.|....-|.||||+|..|++|+.+
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 4788888899999999999999998753
No 89
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=56.17 E-value=6.2 Score=35.00 Aligned_cols=65 Identities=12% Similarity=0.052 Sum_probs=41.1
Q ss_pred EEEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHHHhh
Q 009973 223 STKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSHLRK 296 (521)
Q Consensus 223 t~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~~ 296 (521)
++.+.+-.+..|.||||.|.+++.|+-.+..-+ .+. . .-.-.+-|.+-.+.-+..+..+...+.+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~v--n~~-----~--~~~V~LDve~YRerReetL~~lA~~~A~ 98 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNWI--HPT-----Y--GYSIRLEISTFLQNQEKVMDTQLQSVIM 98 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHH--HHH-----H--SCEEEEEETTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHHh--hhc-----C--CceEEEEhHHhHHHHHHHHHHHHHHHHH
Confidence 456677788999999999999999988774322 210 0 1112333445556666666666665544
No 90
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=49.76 E-value=7 Score=31.54 Aligned_cols=28 Identities=14% Similarity=0.525 Sum_probs=23.3
Q ss_pred EEEEEeccccccccccCCchhHHHHHHH
Q 009973 223 STKLLVPASQAGSLIGKQGGTVKSIQEA 250 (521)
Q Consensus 223 t~~l~VP~~~vG~IIGk~G~~Ik~I~~~ 250 (521)
.+++.|....-|.|||++|..|++|+..
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 5677788888899999999999887664
No 91
>5gds_I Hirunorm V; serine protease-inhibitor complex, thrombin, thrombin synthe inhibitors, antithrombotics, hirunorms; HET: CHG NAL ALC DGL NAG; 2.10A {Homo sapiens} PDB: 4thn_I*
Probab=45.81 E-value=7.7 Score=23.12 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=16.7
Q ss_pred cccccccccCCCCccCCCcc
Q 009973 4 ADQGFVEHDGNHDLEQIPEN 23 (521)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (521)
.|.|--+..++||+|.|||.
T Consensus 4 tdagkPqshn~gDfe~IPee 23 (26)
T 5gds_I 4 TDAGXPESHXGGDYEEIPAA 23 (26)
T ss_pred ccCCCcccccCCCcccCcHh
Confidence 46677788899999999984
No 92
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.83 E-value=12 Score=34.86 Aligned_cols=27 Identities=26% Similarity=0.482 Sum_probs=23.2
Q ss_pred EEEEEeeccccccccccCchHHHHHHh
Q 009973 131 VFRMLVPAQKVGSIIGRKGEFIKKIVE 157 (521)
Q Consensus 131 ~~rllVP~~~vG~IIGKgG~~Ik~I~e 157 (521)
.+++.|....-|.|||++|..|++|+.
T Consensus 41 ~~~I~I~t~rPg~vIG~~G~~I~~L~~ 67 (210)
T 3j20_C 41 GTKVIIFAANPGYVIGRGGRRIRELTR 67 (210)
T ss_dssp CCEEEEEESCHHHHHCSSSHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 367778888899999999999999874
No 93
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=37.60 E-value=12 Score=35.59 Aligned_cols=28 Identities=14% Similarity=0.339 Sum_probs=24.5
Q ss_pred EEEEEeeccccccccccCchHHHHHHhh
Q 009973 131 VFRMLVPAQKVGSIIGRKGEFIKKIVEE 158 (521)
Q Consensus 131 ~~rllVP~~~vG~IIGKgG~~Ik~I~e~ 158 (521)
.+++.|....-|.|||++|..|++|+..
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 4788888899999999999999998754
No 94
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=36.44 E-value=16 Score=34.85 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=25.3
Q ss_pred eEEEEEeeccccccccccCchHHHHHHhh
Q 009973 130 SVFRMLVPAQKVGSIIGRKGEFIKKIVEE 158 (521)
Q Consensus 130 ~~~rllVP~~~vG~IIGKgG~~Ik~I~e~ 158 (521)
..+++.|....-|.|||++|..|++|+..
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 35888888899999999999999998864
No 95
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=36.30 E-value=12 Score=35.41 Aligned_cols=33 Identities=12% Similarity=0.324 Sum_probs=26.8
Q ss_pred EEEEEeeccccccccccCchHHHHHHhhcCcEE
Q 009973 131 VFRMLVPAQKVGSIIGRKGEFIKKIVEETRARI 163 (521)
Q Consensus 131 ~~rllVP~~~vG~IIGKgG~~Ik~I~e~Tga~I 163 (521)
.+.|.+.....|.||||.|.+++.||.-+..-+
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~v 125 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVV 125 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHH
Confidence 456667778899999999999999997666443
No 96
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=35.96 E-value=49 Score=31.04 Aligned_cols=59 Identities=17% Similarity=0.264 Sum_probs=46.9
Q ss_pred EEecCCCccceecCCCchHHHHHHHhCCeEEEccCCCCCCceEEEEEcCHHHHHHHHHHHHHHHH
Q 009973 406 MQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMA 470 (521)
Q Consensus 406 i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~VtI~Gt~e~V~~A~~lI~~~i~ 470 (521)
+.++..++.+++|+++..++.|.+.+++.|.+-.+ -.|=|.++......+...|+.+=.
T Consensus 140 ~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~N------G~IWi~~~~~~~~~~~~ai~~~e~ 198 (229)
T 2ba0_A 140 VAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQN------GLIWVNGDRRKVSIAEEAIYLIEQ 198 (229)
T ss_dssp EECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECTT------SEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEECHHHhHHHhcCCchHHHHhcccCCeEEEEECC------cEEEEeCCchhHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999542 347789988766666666655433
No 97
>1ihs_I Hirutonin; hydrolase(serine proteinase), hydrolase-hydrolase inhibitor; HET: DPN OPR; 2.00A {Homo sapiens}
Probab=34.19 E-value=13 Score=22.01 Aligned_cols=13 Identities=38% Similarity=0.756 Sum_probs=11.0
Q ss_pred ccCCCCccCCCcc
Q 009973 11 HDGNHDLEQIPEN 23 (521)
Q Consensus 11 ~~~~~~~~~~~~~ 23 (521)
..++||+|.|||.
T Consensus 6 shn~gDFe~IPEe 18 (26)
T 1ihs_I 6 SHNDGDFEEIPEE 18 (26)
T ss_pred cCCCCCCCcCCHH
Confidence 4589999999985
No 98
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=33.77 E-value=12 Score=35.23 Aligned_cols=29 Identities=17% Similarity=0.417 Sum_probs=25.3
Q ss_pred eEEEEEeeccccccccccCchHHHHHHhh
Q 009973 130 SVFRMLVPAQKVGSIIGRKGEFIKKIVEE 158 (521)
Q Consensus 130 ~~~rllVP~~~vG~IIGKgG~~Ik~I~e~ 158 (521)
..+++.|....-|.|||++|..|++|+..
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 44 MRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp TEECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 45788899999999999999999998754
No 99
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=31.46 E-value=21 Score=34.87 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=28.5
Q ss_pred ceEEEEEeec-cccccccccCchHHHHHHh--------hcCcEEEEe
Q 009973 129 ESVFRMLVPA-QKVGSIIGRKGEFIKKIVE--------ETRARIKIL 166 (521)
Q Consensus 129 ~~~~rllVP~-~~vG~IIGKgG~~Ik~I~e--------~Tga~I~i~ 166 (521)
.+...++|.. ++.+-||||+|+.||+|.. -.|++|.+.
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 3667777775 5788899999999998863 456666654
No 100
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=31.42 E-value=13 Score=34.70 Aligned_cols=26 Identities=31% Similarity=0.627 Sum_probs=22.2
Q ss_pred EEEEeeccccccccccCchHHHHHHh
Q 009973 132 FRMLVPAQKVGSIIGRKGEFIKKIVE 157 (521)
Q Consensus 132 ~rllVP~~~vG~IIGKgG~~Ik~I~e 157 (521)
+++.|....-|.|||++|+.|++|+.
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~ 88 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRK 88 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHH
Confidence 56677778889999999999998875
No 101
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=30.30 E-value=15 Score=35.07 Aligned_cols=29 Identities=17% Similarity=0.432 Sum_probs=25.4
Q ss_pred eEEEEEeeccccccccccCchHHHHHHhh
Q 009973 130 SVFRMLVPAQKVGSIIGRKGEFIKKIVEE 158 (521)
Q Consensus 130 ~~~rllVP~~~vG~IIGKgG~~Ik~I~e~ 158 (521)
..+++.|....-|.|||++|..|++|++.
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (243)
T 2zkq_c 44 TRTEIIILATRTQNVLGEKGRRIRELTAV 72 (243)
T ss_dssp TEECCEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchHHHHHHHH
Confidence 46788888899999999999999998864
No 102
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=28.91 E-value=14 Score=34.93 Aligned_cols=27 Identities=30% Similarity=0.592 Sum_probs=22.8
Q ss_pred EEEEEeeccccccccccCchHHHHHHh
Q 009973 131 VFRMLVPAQKVGSIIGRKGEFIKKIVE 157 (521)
Q Consensus 131 ~~rllVP~~~vG~IIGKgG~~Ik~I~e 157 (521)
.+++.|....-|.|||++|+.|++|+.
T Consensus 63 ~i~I~I~t~rPg~vIGkkG~~I~~L~~ 89 (233)
T 3i1m_C 63 SIRVTIHTARPGIVIGKKGEDVEKLRK 89 (233)
T ss_dssp CBCCEEEESCHHHHHCSTTHHHHHHHH
T ss_pred eEEEEEEECCCCccccCcchHHHHHHH
Confidence 366777778889999999999998875
No 103
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=27.73 E-value=1.2e+02 Score=28.42 Aligned_cols=59 Identities=22% Similarity=0.246 Sum_probs=44.8
Q ss_pred EEEEeccccccccccCCchhHHHHHHHhcccEEEcCCCCCCcccCCCCeEEEEEcCHHHHHHHHHHHHHH
Q 009973 224 TKLLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDASGVHKAMELIGSH 293 (521)
Q Consensus 224 ~~l~VP~~~vG~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~ 293 (521)
.-+.++...+.+++|+++..++.|.+.+++.|-+-. +..|=|.++......+...|..+
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~-----------NG~IWi~~~~~~~~~~~~ai~~~ 196 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ-----------NGLIWVNGDRRKVSIAEEAIYLI 196 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT-----------TSEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC-----------CcEEEEeCCchhHHHHHHHHHHH
Confidence 345788899999999999999999999999998753 24566888877555555555443
No 104
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=27.02 E-value=22 Score=33.80 Aligned_cols=28 Identities=39% Similarity=0.526 Sum_probs=22.8
Q ss_pred EEEEEeeccccccccccCchHHHHHHhh
Q 009973 131 VFRMLVPAQKVGSIIGRKGEFIKKIVEE 158 (521)
Q Consensus 131 ~~rllVP~~~vG~IIGKgG~~Ik~I~e~ 158 (521)
.+++.|....-|.|||++|+.|++|++.
T Consensus 63 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 63 NVAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp CBCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred eEEEEEEeCCCcceecCCchHHHHHHHH
Confidence 3556667788899999999999998764
No 105
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=26.33 E-value=30 Score=33.77 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=22.9
Q ss_pred ceEEEEEecc-ccccccccCCchhHHHHHHH
Q 009973 221 KVSTKLLVPA-SQAGSLIGKQGGTVKSIQEA 250 (521)
Q Consensus 221 ~~t~~l~VP~-~~vG~IIGk~G~~Ik~I~~~ 250 (521)
.+...++|.. .+-+.||||+|+.||+|...
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ 269 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKR 269 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHH
Confidence 3556677775 57789999999999886543
No 106
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=25.87 E-value=19 Score=33.78 Aligned_cols=28 Identities=4% Similarity=0.106 Sum_probs=22.9
Q ss_pred EEEEEeeccccccccccCchHHHHHHhh
Q 009973 131 VFRMLVPAQKVGSIIGRKGEFIKKIVEE 158 (521)
Q Consensus 131 ~~rllVP~~~vG~IIGKgG~~Ik~I~e~ 158 (521)
.+++.|....-|.||||+|..|++|+++
T Consensus 71 ~i~I~I~~~rPg~vIGk~g~~i~~L~~~ 98 (218)
T 3bbn_C 71 LIQVIIHMGFPKLLIENRPQGVEDLKIN 98 (218)
T ss_dssp CBCCEEEESCTTTTSCSSSCTTHHHHHH
T ss_pred eEEEEEEecCCCcEecCCcHHHHHHHHH
Confidence 3556677788899999999999998764
No 107
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=25.82 E-value=15 Score=34.58 Aligned_cols=61 Identities=7% Similarity=0.110 Sum_probs=37.8
Q ss_pred EEEEEecCCCccceecCCCchHHHHHHHhCCeEEEccCCCCCCceEEEEEcCHHHHHHHHHHH
Q 009973 403 TQQMQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLI 465 (521)
Q Consensus 403 t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~VtI~Gt~e~V~~A~~lI 465 (521)
+..|.|..+-.|.||||.|.+++.||-.+...+ .........-++-|-|-.+.-+..+..+
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~v--n~~~~~~~rv~LDi~~YR~rR~e~L~~l 153 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVV--NKSSSDYIRVKLDTENYRERRKETLETL 153 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHH--HHTCSSCCEEEEESTTHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHH--HhcCCCceEEEEecchHHHHHHHHHHHH
Confidence 445666667789999999999999999885433 3222211223455556555444444433
No 108
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=25.27 E-value=1.4e+02 Score=27.94 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=0.0
Q ss_pred EEecCCCccceecCCCchHHHHHHHhCCeEEEccCCCCCCceEEEEE-cCHHHHHHHHHHHHHHHHhcc
Q 009973 406 MQIPLSYADAVIGTAGASISYIRRSSGATVTIQETRGVPGEMTVEIS-GTASQVQTAQQLIQNFMAEAA 473 (521)
Q Consensus 406 i~VP~~~vG~IIGkgG~~Ik~Ir~~SGA~I~I~~~~~~~~er~VtI~-Gt~e~V~~A~~lI~~~i~~~~ 473 (521)
+.++..++.+++|+++..+..|.+.+++.|.+-. +..|-|. +++..+..+...|+.+=.++.
T Consensus 152 v~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~------NG~IWi~~~~~~~~~~~~~ai~~~e~~~~ 214 (235)
T 2z0s_A 152 VEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR------NGRIHLECPNEDLEAIAVMAIKIIDEEAY 214 (235)
T ss_dssp EECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET------TTEEEEECSCHHHHHHHHHHHHHHHHCSC
T ss_pred EEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC------CCEEEEecCCHHHHHHHHHHHHHHHhhhh
No 109
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=24.96 E-value=27 Score=33.21 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=22.0
Q ss_pred EEEEecCCCccceecCCCchHHHHHHH
Q 009973 404 QQMQIPLSYADAVIGTAGASISYIRRS 430 (521)
Q Consensus 404 ~~i~VP~~~vG~IIGkgG~~Ik~Ir~~ 430 (521)
.+|.|-...-|.|||++|..|++|+..
T Consensus 46 i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 46 TEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp EEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 457777778899999999999887644
No 110
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=22.99 E-value=1.3e+02 Score=22.24 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=27.6
Q ss_pred hHHHHHHHhCCeEEEccCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Q 009973 423 SISYIRRSSGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAE 471 (521)
Q Consensus 423 ~Ik~Ir~~SGA~I~I~~~~~~~~er~VtI~Gt~e~V~~A~~lI~~~i~~ 471 (521)
.|++-|+..|+--.--+ .++-.|.|+|-|+||.+-+..-.+++..
T Consensus 22 mirqarkfagtvtytld----gndleiritgvpeqvrkelakeaerlak 66 (85)
T 2kl8_A 22 MIRQARKFAGTVTYTLD----GNDLEIRITGVPEQVRKELAKEAERLAK 66 (85)
T ss_dssp HHHHHTTTTCEEEEEEC----SSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcceEEEEec----CCeeEEEEecChHHHHHHHHHHHHHHHH
Confidence 34555555554322222 2456799999999998766555555554
No 111
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.57 E-value=34 Score=31.81 Aligned_cols=28 Identities=25% Similarity=0.561 Sum_probs=22.4
Q ss_pred EEEEEeccccccccccCCchhHHHHHHH
Q 009973 223 STKLLVPASQAGSLIGKQGGTVKSIQEA 250 (521)
Q Consensus 223 t~~l~VP~~~vG~IIGk~G~~Ik~I~~~ 250 (521)
.+++.|....-|.|||++|..|++|+..
T Consensus 41 ~~~I~I~t~rPg~vIG~~G~~I~~L~~~ 68 (210)
T 3j20_C 41 GTKVIIFAANPGYVIGRGGRRIRELTRI 68 (210)
T ss_dssp CCEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 4566777778899999999999887653
No 112
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=21.19 E-value=42 Score=31.90 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=24.4
Q ss_pred eEEEEEeccccccccccCCchhHHHHHHH
Q 009973 222 VSTKLLVPASQAGSLIGKQGGTVKSIQEA 250 (521)
Q Consensus 222 ~t~~l~VP~~~vG~IIGk~G~~Ik~I~~~ 250 (521)
..+++.|....-|.|||++|..|++|+..
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 35677888888999999999999987765
No 113
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=20.74 E-value=30 Score=32.55 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=22.9
Q ss_pred EEEEEecCCCccceecCCCchHHHHHHH
Q 009973 403 TQQMQIPLSYADAVIGTAGASISYIRRS 430 (521)
Q Consensus 403 t~~i~VP~~~vG~IIGkgG~~Ik~Ir~~ 430 (521)
..+|.|-...-|.|||++|..|++|+..
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 4567777888899999999999887553
No 114
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=20.15 E-value=67 Score=28.81 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=24.0
Q ss_pred eEEEEEeeccccccccccCchHHHHH-Hhhc
Q 009973 130 SVFRMLVPAQKVGSIIGRKGEFIKKI-VEET 159 (521)
Q Consensus 130 ~~~rllVP~~~vG~IIGKgG~~Ik~I-~e~T 159 (521)
+...+.||.++.|.+|| .+|++| ++++
T Consensus 7 l~~~i~I~P~~~~~~i~---~~I~~~L~~~~ 34 (187)
T 1go3_E 7 IADVVKVPPEEFGKDLK---ETVKKILMEKY 34 (187)
T ss_dssp EEEEEEECGGGTTSCHH---HHHHHHHHHHH
T ss_pred EEEEEEECHHHhCccHH---HHHHHHHHHHh
Confidence 56788999999999999 699995 9999
Done!