Query 009974
Match_columns 521
No_of_seqs 538 out of 3645
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 19:32:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0734 AAA+-type ATPase conta 100.0 9E-109 2E-113 828.4 43.6 490 2-502 239-735 (752)
2 COG0465 HflB ATP-dependent Zn 100.0 2.5E-95 6E-100 764.4 43.9 485 7-503 91-592 (596)
3 KOG0731 AAA+-type ATPase conta 100.0 3.8E-91 8.3E-96 743.1 42.3 436 69-507 303-754 (774)
4 CHL00176 ftsH cell division pr 100.0 1.5E-86 3.3E-91 718.9 50.7 436 69-506 175-630 (638)
5 PRK10733 hflB ATP-dependent me 100.0 4.7E-84 1E-88 707.6 51.3 435 69-503 144-597 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 1.2E-81 2.6E-86 673.9 51.5 474 13-500 3-495 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 1.1E-55 2.4E-60 429.3 24.3 249 69-317 143-396 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.9E-53 4.2E-58 480.9 28.4 307 103-433 1623-1984(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 9.2E-50 2E-54 414.0 23.4 246 69-314 426-675 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 2.7E-47 5.7E-52 390.0 23.6 246 70-315 504-771 (802)
11 PF01434 Peptidase_M41: Peptid 100.0 1.3E-44 2.8E-49 344.8 20.6 197 302-498 1-213 (213)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 1.5E-44 3.2E-49 369.9 21.0 227 70-296 183-414 (802)
13 COG1223 Predicted ATPase (AAA+ 100.0 2.2E-44 4.8E-49 335.3 19.9 237 72-313 116-355 (368)
14 KOG0727 26S proteasome regulat 100.0 1.3E-43 2.9E-48 328.7 21.3 246 69-314 147-397 (408)
15 KOG0729 26S proteasome regulat 100.0 2.2E-43 4.8E-48 329.5 17.3 251 68-318 168-423 (435)
16 KOG0728 26S proteasome regulat 100.0 6.8E-43 1.5E-47 323.7 19.5 247 70-316 140-391 (404)
17 KOG0652 26S proteasome regulat 100.0 5.8E-43 1.3E-47 325.8 18.0 248 68-315 162-414 (424)
18 KOG0726 26S proteasome regulat 100.0 4E-43 8.6E-48 331.5 14.5 248 70-317 178-430 (440)
19 KOG0738 AAA+-type ATPase [Post 100.0 1.6E-42 3.5E-47 339.1 19.2 247 66-315 201-471 (491)
20 KOG0736 Peroxisome assembly fa 100.0 3.5E-42 7.7E-47 360.4 23.0 246 69-315 664-934 (953)
21 PTZ00454 26S protease regulato 100.0 5.1E-41 1.1E-45 347.0 26.2 248 69-316 137-389 (398)
22 PRK03992 proteasome-activating 100.0 1.5E-39 3.2E-44 337.6 25.6 249 70-318 124-377 (389)
23 PTZ00361 26 proteosome regulat 100.0 2.7E-39 5.8E-44 336.0 23.8 247 70-316 176-427 (438)
24 KOG0739 AAA+-type ATPase [Post 100.0 1.7E-40 3.8E-45 314.5 12.2 231 63-296 119-353 (439)
25 KOG0735 AAA+-type ATPase [Post 100.0 4.4E-39 9.4E-44 334.3 21.9 223 74-296 664-888 (952)
26 COG0464 SpoVK ATPases of the A 100.0 1.7E-38 3.8E-43 341.4 25.0 245 69-313 234-483 (494)
27 CHL00195 ycf46 Ycf46; Provisio 100.0 6.2E-38 1.3E-42 330.4 24.7 239 72-315 223-465 (489)
28 TIGR01243 CDC48 AAA family ATP 100.0 5.8E-38 1.2E-42 351.1 25.4 245 71-315 447-712 (733)
29 KOG0737 AAA+-type ATPase [Post 100.0 2.2E-38 4.9E-43 310.4 19.3 230 65-296 80-314 (386)
30 TIGR01242 26Sp45 26S proteasom 100.0 1.2E-36 2.5E-41 314.6 25.6 244 70-313 115-363 (364)
31 KOG0651 26S proteasome regulat 100.0 5.2E-37 1.1E-41 292.9 12.4 242 73-314 128-374 (388)
32 TIGR03689 pup_AAA proteasome A 100.0 4.9E-35 1.1E-39 307.9 25.0 262 67-328 172-493 (512)
33 PLN00020 ribulose bisphosphate 100.0 1.4E-32 3.1E-37 272.5 22.8 261 72-344 110-394 (413)
34 KOG0730 AAA+-type ATPase [Post 100.0 4E-33 8.8E-38 290.2 19.5 239 72-317 180-420 (693)
35 KOG0732 AAA+-type ATPase conta 100.0 3.2E-32 7E-37 298.5 19.2 250 70-319 258-531 (1080)
36 TIGR01243 CDC48 AAA family ATP 100.0 1.8E-31 3.8E-36 298.9 24.7 245 72-316 173-438 (733)
37 KOG0740 AAA+-type ATPase [Post 100.0 9.2E-32 2E-36 273.3 14.7 242 70-314 146-405 (428)
38 KOG0741 AAA+-type ATPase [Post 100.0 8.8E-32 1.9E-36 272.1 13.4 269 72-345 214-530 (744)
39 KOG0743 AAA+-type ATPase [Post 99.9 9.5E-23 2.1E-27 206.0 22.9 212 65-286 189-413 (457)
40 KOG0742 AAA+-type ATPase [Post 99.9 5.8E-23 1.3E-27 202.8 17.8 207 72-287 350-586 (630)
41 CHL00181 cbbX CbbX; Provisiona 99.9 2.3E-22 5E-27 200.2 19.6 223 76-306 22-271 (287)
42 TIGR02881 spore_V_K stage V sp 99.9 6E-22 1.3E-26 195.6 20.8 213 75-296 4-241 (261)
43 TIGR02880 cbbX_cfxQ probable R 99.9 1.1E-21 2.3E-26 195.6 19.3 214 75-296 19-256 (284)
44 PF05496 RuvB_N: Holliday junc 99.9 5.6E-21 1.2E-25 178.8 18.5 191 72-290 19-226 (233)
45 PF00004 AAA: ATPase family as 99.9 7.1E-22 1.5E-26 173.8 11.8 129 113-242 1-132 (132)
46 TIGR02902 spore_lonB ATP-depen 99.8 2.1E-20 4.5E-25 201.3 16.4 265 17-311 5-330 (531)
47 PRK00080 ruvB Holliday junctio 99.8 1E-19 2.2E-24 185.7 20.5 214 72-313 20-250 (328)
48 COG2255 RuvB Holliday junction 99.8 1.4E-19 3.1E-24 172.3 18.8 215 72-314 21-252 (332)
49 TIGR00635 ruvB Holliday juncti 99.8 1.6E-19 3.4E-24 182.7 20.3 211 74-312 1-228 (305)
50 KOG0744 AAA+-type ATPase [Post 99.8 3.1E-20 6.6E-25 179.1 12.9 234 74-311 139-412 (423)
51 KOG0736 Peroxisome assembly fa 99.8 3.1E-19 6.6E-24 188.7 18.9 204 107-313 428-653 (953)
52 KOG0735 AAA+-type ATPase [Post 99.8 2E-18 4.4E-23 181.0 18.9 236 109-344 430-682 (952)
53 COG2256 MGS1 ATPase related to 99.8 3.5E-18 7.5E-23 170.3 18.0 203 72-314 19-239 (436)
54 PRK14956 DNA polymerase III su 99.8 4.6E-18 9.9E-23 177.2 19.5 204 70-310 11-243 (484)
55 TIGR00763 lon ATP-dependent pr 99.8 5.8E-18 1.3E-22 190.6 20.7 197 78-290 321-551 (775)
56 PRK12323 DNA polymerase III su 99.8 3.5E-18 7.6E-23 182.1 17.4 203 70-309 9-245 (700)
57 PRK07003 DNA polymerase III su 99.8 9.1E-18 2E-22 181.0 20.1 202 70-308 9-239 (830)
58 TIGR02639 ClpA ATP-dependent C 99.8 9.9E-18 2.1E-22 187.8 19.4 223 72-314 177-430 (731)
59 PRK14962 DNA polymerase III su 99.8 2.5E-17 5.4E-22 174.2 21.1 203 72-311 9-240 (472)
60 PRK14961 DNA polymerase III su 99.8 5.4E-17 1.2E-21 167.7 21.1 204 71-311 10-242 (363)
61 PRK04195 replication factor C 99.8 3.5E-17 7.6E-22 175.3 19.6 210 68-310 5-222 (482)
62 PRK14958 DNA polymerase III su 99.8 2.2E-17 4.7E-22 176.4 17.8 204 70-310 9-241 (509)
63 PRK07994 DNA polymerase III su 99.8 5.6E-17 1.2E-21 175.7 20.8 202 72-310 11-241 (647)
64 PRK14960 DNA polymerase III su 99.7 4E-17 8.7E-22 174.5 19.1 203 71-310 9-240 (702)
65 PRK11034 clpA ATP-dependent Cl 99.7 3.3E-17 7.2E-22 181.6 18.7 223 73-315 182-435 (758)
66 COG0464 SpoVK ATPases of the A 99.7 8.8E-17 1.9E-21 173.2 20.7 217 97-315 5-228 (494)
67 PRK13342 recombination factor 99.7 1.9E-16 4.1E-21 166.5 22.3 200 72-313 7-219 (413)
68 PRK08691 DNA polymerase III su 99.7 6.6E-17 1.4E-21 174.3 19.0 211 70-311 9-242 (709)
69 TIGR00362 DnaA chromosomal rep 99.7 2.2E-16 4.9E-21 165.8 21.9 191 110-314 136-338 (405)
70 PRK14949 DNA polymerase III su 99.7 1.4E-16 3.1E-21 174.9 20.6 208 71-309 10-240 (944)
71 PRK06645 DNA polymerase III su 99.7 1.2E-16 2.6E-21 169.7 19.3 213 70-310 14-253 (507)
72 PLN03025 replication factor C 99.7 1E-16 2.3E-21 162.9 18.0 202 69-309 5-219 (319)
73 PRK14964 DNA polymerase III su 99.7 1.6E-16 3.4E-21 167.5 19.4 203 71-310 7-238 (491)
74 PRK14088 dnaA chromosomal repl 99.7 2.5E-16 5.5E-21 166.1 20.9 225 70-315 98-334 (440)
75 PRK00149 dnaA chromosomal repl 99.7 2.7E-16 5.9E-21 167.2 21.1 190 111-314 149-350 (450)
76 PRK14951 DNA polymerase III su 99.7 2.7E-16 5.8E-21 170.1 20.1 203 71-310 10-246 (618)
77 TIGR02928 orc1/cdc6 family rep 99.7 5.7E-16 1.2E-20 160.6 21.3 219 77-313 15-274 (365)
78 KOG0989 Replication factor C, 99.7 2.2E-16 4.7E-21 152.2 16.0 201 67-303 26-243 (346)
79 PRK14963 DNA polymerase III su 99.7 4.5E-16 9.8E-21 166.0 20.2 202 71-310 8-237 (504)
80 PRK14959 DNA polymerase III su 99.7 4E-16 8.6E-21 167.7 18.8 204 70-310 9-241 (624)
81 PRK12402 replication factor C 99.7 1.4E-15 3.1E-20 155.7 21.7 210 69-311 7-247 (337)
82 PRK05563 DNA polymerase III su 99.7 8.9E-16 1.9E-20 166.2 21.1 203 71-310 10-241 (559)
83 PRK14952 DNA polymerase III su 99.7 8.4E-16 1.8E-20 165.7 19.7 204 71-310 7-241 (584)
84 PRK14969 DNA polymerase III su 99.7 4.8E-16 1E-20 167.2 17.6 203 71-310 10-241 (527)
85 PRK14957 DNA polymerase III su 99.7 1.5E-15 3.2E-20 162.4 20.3 203 71-310 10-241 (546)
86 COG0466 Lon ATP-dependent Lon 99.7 6.9E-16 1.5E-20 163.4 17.5 164 77-256 323-508 (782)
87 PRK13341 recombination factor 99.7 1.4E-15 3.1E-20 167.9 20.8 210 70-313 21-247 (725)
88 TIGR03345 VI_ClpV1 type VI sec 99.7 1E-15 2.2E-20 172.9 20.0 218 72-310 182-428 (852)
89 PRK07764 DNA polymerase III su 99.7 1E-15 2.2E-20 171.0 19.7 203 71-309 9-242 (824)
90 PRK00411 cdc6 cell division co 99.7 3.7E-15 8.1E-20 156.2 22.5 222 75-313 28-282 (394)
91 TIGR02397 dnaX_nterm DNA polym 99.7 1.4E-15 3E-20 157.1 18.9 205 70-311 7-240 (355)
92 TIGR03420 DnaA_homol_Hda DnaA 99.7 2.3E-15 5E-20 145.4 19.2 203 74-310 12-225 (226)
93 PRK14086 dnaA chromosomal repl 99.7 5.8E-15 1.3E-19 158.0 23.3 192 111-315 315-517 (617)
94 PRK06893 DNA replication initi 99.7 3.8E-15 8.3E-20 144.1 19.1 209 72-310 11-227 (229)
95 PHA02544 44 clamp loader, smal 99.7 2.7E-15 5.9E-20 152.5 18.6 207 67-308 11-226 (316)
96 PRK08903 DnaA regulatory inact 99.7 5.8E-15 1.3E-19 142.9 19.6 203 70-311 11-224 (227)
97 PRK05896 DNA polymerase III su 99.7 3E-15 6.4E-20 160.2 19.0 203 70-309 9-240 (605)
98 PRK14965 DNA polymerase III su 99.7 2.7E-15 5.8E-20 163.2 18.7 202 71-309 10-240 (576)
99 PRK09111 DNA polymerase III su 99.7 5.7E-15 1.2E-19 160.1 20.9 210 70-310 17-254 (598)
100 PRK07940 DNA polymerase III su 99.7 2.5E-15 5.4E-20 155.5 17.2 183 74-282 2-211 (394)
101 PRK08451 DNA polymerase III su 99.7 6E-15 1.3E-19 157.0 20.5 203 70-309 7-238 (535)
102 PRK14087 dnaA chromosomal repl 99.7 7.6E-15 1.6E-19 155.1 21.1 190 111-313 142-348 (450)
103 KOG2028 ATPase related to the 99.7 3.2E-15 7E-20 146.5 16.5 230 70-336 131-388 (554)
104 PRK14953 DNA polymerase III su 99.7 3.7E-15 8.1E-20 158.5 18.5 210 70-310 9-241 (486)
105 PRK12422 chromosomal replicati 99.7 1E-14 2.2E-19 153.6 21.6 194 110-315 141-345 (445)
106 PRK07133 DNA polymerase III su 99.7 5.7E-15 1.2E-19 161.0 20.1 210 70-310 11-240 (725)
107 PRK08084 DNA replication initi 99.6 9.5E-15 2.1E-19 141.9 19.6 204 73-310 18-233 (235)
108 PRK10865 protein disaggregatio 99.6 2.7E-15 5.9E-20 169.9 18.1 167 72-259 173-357 (857)
109 PRK14970 DNA polymerase III su 99.6 5.5E-15 1.2E-19 153.4 18.6 210 71-311 11-231 (367)
110 PRK06647 DNA polymerase III su 99.6 7.1E-15 1.5E-19 158.7 19.5 209 71-310 10-241 (563)
111 PTZ00112 origin recognition co 99.6 1.1E-14 2.4E-19 157.8 20.5 217 77-315 755-1008(1164)
112 KOG2004 Mitochondrial ATP-depe 99.6 3.5E-15 7.5E-20 157.3 16.1 168 77-257 411-597 (906)
113 PRK14955 DNA polymerase III su 99.6 5.7E-15 1.2E-19 154.4 17.4 213 71-310 10-254 (397)
114 TIGR03346 chaperone_ClpB ATP-d 99.6 6.4E-15 1.4E-19 167.5 18.6 204 72-296 168-399 (852)
115 PRK06305 DNA polymerase III su 99.6 1.9E-14 4.1E-19 152.2 20.9 202 72-310 12-243 (451)
116 CHL00095 clpC Clp protease ATP 99.6 9E-15 1.9E-19 165.9 18.2 203 73-296 175-404 (821)
117 TIGR02903 spore_lon_C ATP-depe 99.6 4.2E-14 9.1E-19 154.9 22.5 216 70-312 147-429 (615)
118 PRK08727 hypothetical protein; 99.6 4.3E-14 9.4E-19 137.1 20.1 179 111-311 42-229 (233)
119 COG2812 DnaX DNA polymerase II 99.6 6.4E-15 1.4E-19 154.9 15.2 209 70-309 9-240 (515)
120 PRK14954 DNA polymerase III su 99.6 3.1E-14 6.8E-19 154.6 20.0 213 71-310 10-254 (620)
121 PRK10787 DNA-binding ATP-depen 99.6 2.2E-14 4.8E-19 160.4 18.4 219 75-310 319-579 (784)
122 PRK14948 DNA polymerase III su 99.6 4.2E-14 9.2E-19 154.3 20.0 207 70-308 9-240 (620)
123 PRK05642 DNA replication initi 99.6 1.1E-13 2.4E-18 134.4 20.8 179 110-310 45-232 (234)
124 PRK00440 rfc replication facto 99.6 4.8E-14 1E-18 143.3 19.2 206 67-311 7-224 (319)
125 COG0593 DnaA ATPase involved i 99.6 1E-13 2.2E-18 142.0 20.6 228 70-318 80-318 (408)
126 TIGR02640 gas_vesic_GvpN gas v 99.6 8.5E-14 1.8E-18 137.5 19.2 186 111-315 22-259 (262)
127 PRK14950 DNA polymerase III su 99.6 5.4E-14 1.2E-18 153.7 19.4 203 71-310 10-242 (585)
128 PF05673 DUF815: Protein of un 99.6 8.7E-14 1.9E-18 132.3 17.8 192 71-288 21-244 (249)
129 PRK13407 bchI magnesium chelat 99.6 2.4E-14 5.2E-19 144.8 14.4 214 73-314 4-307 (334)
130 PRK05342 clpX ATP-dependent pr 99.6 8.4E-14 1.8E-18 144.9 18.8 223 69-293 62-378 (412)
131 PF00308 Bac_DnaA: Bacterial d 99.6 4.4E-14 9.5E-19 135.6 15.3 198 73-293 4-216 (219)
132 COG1474 CDC6 Cdc6-related prot 99.6 2.3E-13 5E-18 139.7 21.0 215 79-313 19-265 (366)
133 PRK06620 hypothetical protein; 99.6 9E-14 2E-18 132.8 16.5 196 70-310 9-213 (214)
134 TIGR00390 hslU ATP-dependent p 99.6 1.4E-13 3E-18 140.7 18.5 173 78-252 13-342 (441)
135 CHL00081 chlI Mg-protoporyphyr 99.5 6.9E-14 1.5E-18 141.7 14.8 221 72-316 12-325 (350)
136 PRK05201 hslU ATP-dependent pr 99.5 2.2E-13 4.8E-18 139.3 17.8 172 79-252 17-344 (443)
137 PRK14971 DNA polymerase III su 99.5 4E-13 8.7E-18 146.8 20.9 202 72-310 12-243 (614)
138 COG3829 RocR Transcriptional r 99.5 2.3E-14 5E-19 148.5 10.1 208 72-307 240-491 (560)
139 TIGR00382 clpX endopeptidase C 99.5 4.2E-13 9.1E-18 139.0 18.0 224 69-294 68-385 (413)
140 COG1224 TIP49 DNA helicase TIP 99.5 1.5E-12 3.3E-17 127.9 19.8 99 212-313 321-432 (450)
141 TIGR02030 BchI-ChlI magnesium 99.5 3.3E-13 7.1E-18 136.9 15.9 215 75-316 2-312 (337)
142 PRK11034 clpA ATP-dependent Cl 99.5 2.6E-13 5.6E-18 150.8 14.8 166 78-258 459-668 (758)
143 PRK09112 DNA polymerase III su 99.5 1.3E-12 2.8E-17 133.6 18.6 188 72-287 18-242 (351)
144 PRK15424 propionate catabolism 99.5 3.5E-13 7.6E-18 144.4 13.6 208 74-307 216-479 (538)
145 TIGR02442 Cob-chelat-sub cobal 99.5 6.9E-13 1.5E-17 146.2 16.1 214 75-315 2-306 (633)
146 COG2204 AtoC Response regulato 99.5 2.5E-13 5.5E-18 141.0 11.6 205 74-307 138-385 (464)
147 TIGR02639 ClpA ATP-dependent C 99.5 1.7E-12 3.6E-17 145.8 18.8 167 77-258 454-664 (731)
148 PRK07471 DNA polymerase III su 99.5 2.1E-12 4.6E-17 132.7 17.8 185 72-286 14-239 (365)
149 PRK09087 hypothetical protein; 99.5 1.4E-12 3E-17 125.7 15.0 171 112-313 46-222 (226)
150 TIGR01650 PD_CobS cobaltochela 99.5 7.7E-13 1.7E-17 132.1 13.5 137 111-257 65-234 (327)
151 KOG1969 DNA replication checkp 99.4 2.4E-12 5.2E-17 136.5 16.6 216 65-297 259-519 (877)
152 cd00009 AAA The AAA+ (ATPases 99.4 2.7E-12 5.9E-17 113.8 14.5 120 110-241 19-150 (151)
153 TIGR02329 propionate_PrpR prop 99.4 6.3E-13 1.4E-17 142.5 11.5 208 74-307 209-464 (526)
154 KOG0991 Replication factor C, 99.4 2E-12 4.4E-17 120.1 13.0 210 66-311 16-235 (333)
155 COG3604 FhlA Transcriptional r 99.4 1.1E-12 2.3E-17 134.4 11.9 199 72-293 218-456 (550)
156 PRK05564 DNA polymerase III su 99.4 8.2E-12 1.8E-16 126.7 17.6 169 75-276 2-182 (313)
157 COG2607 Predicted ATPase (AAA+ 99.4 2.6E-11 5.6E-16 113.6 18.9 195 69-289 52-277 (287)
158 PHA02244 ATPase-like protein 99.4 1E-11 2.2E-16 125.4 17.2 124 111-245 120-263 (383)
159 PRK13531 regulatory ATPase Rav 99.4 1.4E-11 3.1E-16 128.5 18.5 213 78-317 21-287 (498)
160 TIGR00368 Mg chelatase-related 99.4 7.2E-12 1.6E-16 133.5 16.6 208 74-311 189-497 (499)
161 COG0542 clpA ATP-binding subun 99.4 1.3E-11 2.9E-16 134.8 18.7 168 72-259 165-349 (786)
162 PF05621 TniB: Bacterial TniB 99.4 1.4E-11 3.1E-16 120.9 15.5 212 80-308 37-284 (302)
163 PRK07399 DNA polymerase III su 99.4 1.2E-11 2.6E-16 124.8 15.0 183 75-287 2-223 (314)
164 TIGR03345 VI_ClpV1 type VI sec 99.4 2.3E-11 4.9E-16 137.8 18.6 193 77-288 566-825 (852)
165 TIGR03346 chaperone_ClpB ATP-d 99.3 3.6E-11 7.7E-16 137.1 19.3 200 76-290 564-822 (852)
166 TIGR02974 phageshock_pspF psp 99.3 1.4E-11 3E-16 125.5 14.0 198 79-305 1-242 (329)
167 PRK10865 protein disaggregatio 99.3 3.9E-11 8.4E-16 136.3 19.0 169 75-258 566-781 (857)
168 PF01078 Mg_chelatase: Magnesi 99.3 2.2E-12 4.8E-17 120.4 7.3 119 75-220 1-158 (206)
169 COG0714 MoxR-like ATPases [Gen 99.3 6.5E-11 1.4E-15 121.0 18.8 134 111-256 44-203 (329)
170 PRK05022 anaerobic nitric oxid 99.3 1E-11 2.2E-16 134.0 13.3 193 75-293 185-420 (509)
171 TIGR00678 holB DNA polymerase 99.3 3.9E-11 8.4E-16 112.6 15.4 145 107-276 11-183 (188)
172 TIGR03015 pepcterm_ATPase puta 99.3 3.3E-10 7.1E-15 112.3 22.8 188 112-313 45-266 (269)
173 TIGR01817 nifA Nif-specific re 99.3 5.7E-12 1.2E-16 137.1 11.0 205 74-307 193-439 (534)
174 smart00350 MCM minichromosome 99.3 3E-11 6.5E-16 130.2 16.1 188 111-313 237-504 (509)
175 PRK11608 pspF phage shock prot 99.3 1.7E-11 3.7E-16 124.9 13.4 202 75-305 4-249 (326)
176 PRK10820 DNA-binding transcrip 99.3 3.1E-11 6.7E-16 130.4 15.0 206 72-306 199-447 (520)
177 TIGR00764 lon_rel lon-related 99.3 9.3E-11 2E-15 128.3 18.8 102 210-313 267-391 (608)
178 PRK11388 DNA-binding transcrip 99.3 1.4E-11 3.1E-16 136.8 12.2 209 73-310 321-568 (638)
179 COG1221 PspF Transcriptional r 99.3 9E-12 1.9E-16 127.4 9.6 197 72-293 73-309 (403)
180 COG0470 HolB ATPase involved i 99.3 7.6E-11 1.7E-15 120.0 16.3 175 78-293 2-204 (325)
181 CHL00095 clpC Clp protease ATP 99.3 8.9E-11 1.9E-15 133.5 18.1 167 77-258 509-734 (821)
182 PRK15429 formate hydrogenlyase 99.3 7E-11 1.5E-15 132.2 16.1 194 74-293 373-609 (686)
183 COG0542 clpA ATP-binding subun 99.3 2.8E-11 6.1E-16 132.3 12.1 166 77-257 491-706 (786)
184 TIGR00602 rad24 checkpoint pro 99.3 5E-11 1.1E-15 129.6 13.7 258 66-345 73-390 (637)
185 KOG0741 AAA+-type ATPase [Post 99.3 8.5E-11 1.8E-15 120.7 14.4 156 91-254 525-684 (744)
186 PRK04132 replication factor C 99.3 1.5E-10 3.3E-15 129.0 17.5 170 113-309 567-750 (846)
187 TIGR02031 BchD-ChlD magnesium 99.2 4.2E-11 9.2E-16 130.8 13.0 187 112-314 18-259 (589)
188 KOG1942 DNA helicase, TBP-inte 99.2 4.9E-10 1.1E-14 107.6 18.1 129 170-314 297-439 (456)
189 PRK05707 DNA polymerase III su 99.2 1.5E-10 3.2E-15 117.6 15.6 157 107-285 19-203 (328)
190 PRK08058 DNA polymerase III su 99.2 7E-11 1.5E-15 120.5 13.1 149 75-254 3-180 (329)
191 smart00382 AAA ATPases associa 99.2 7.6E-11 1.7E-15 103.4 11.5 125 110-243 2-147 (148)
192 PF06068 TIP49: TIP49 C-termin 99.2 2.4E-10 5.3E-15 114.4 15.8 66 75-147 22-89 (398)
193 PRK09862 putative ATP-dependen 99.2 2.4E-10 5.2E-15 121.4 16.1 209 74-311 188-490 (506)
194 PRK11331 5-methylcytosine-spec 99.2 2.1E-10 4.6E-15 118.9 14.5 141 76-242 174-357 (459)
195 PF07728 AAA_5: AAA domain (dy 99.2 2.7E-11 5.8E-16 107.8 6.2 110 112-234 1-139 (139)
196 PF00158 Sigma54_activat: Sigm 99.2 9.7E-11 2.1E-15 107.5 9.4 120 79-221 1-144 (168)
197 COG1219 ClpX ATP-dependent pro 99.1 1.2E-10 2.6E-15 113.1 8.9 126 79-206 63-203 (408)
198 COG0606 Predicted ATPase with 99.1 9.4E-11 2E-15 120.5 8.6 209 74-311 176-483 (490)
199 TIGR02915 PEP_resp_reg putativ 99.1 3.8E-10 8.3E-15 120.2 12.2 203 75-306 137-382 (445)
200 KOG0990 Replication factor C, 99.1 6.4E-10 1.4E-14 108.4 12.4 199 62-294 26-238 (360)
201 PRK06871 DNA polymerase III su 99.1 4.8E-09 1E-13 105.9 17.7 130 107-255 21-178 (325)
202 PF13177 DNA_pol3_delta2: DNA 99.1 6E-10 1.3E-14 101.9 10.1 133 81-242 1-160 (162)
203 COG1239 ChlI Mg-chelatase subu 99.1 1.3E-09 2.9E-14 110.6 13.2 158 74-258 14-234 (423)
204 PRK11361 acetoacetate metaboli 99.1 8.1E-10 1.8E-14 118.1 11.6 205 75-308 141-388 (457)
205 PRK08116 hypothetical protein; 99.1 9.4E-10 2E-14 108.8 10.9 123 110-245 114-251 (268)
206 PRK10923 glnG nitrogen regulat 99.0 2.5E-09 5.5E-14 114.7 14.2 205 75-308 136-383 (469)
207 KOG1514 Origin recognition com 99.0 7E-09 1.5E-13 110.5 17.0 194 112-316 424-658 (767)
208 PF07724 AAA_2: AAA domain (Cd 99.0 6.1E-10 1.3E-14 102.6 8.1 110 111-222 4-131 (171)
209 PTZ00111 DNA replication licen 99.0 5.8E-09 1.3E-13 116.0 16.9 131 110-255 492-656 (915)
210 PRK06964 DNA polymerase III su 99.0 2.1E-09 4.4E-14 109.3 12.4 134 107-255 18-203 (342)
211 smart00763 AAA_PrkA PrkA AAA d 99.0 5.1E-09 1.1E-13 106.0 15.0 82 75-162 48-141 (361)
212 PRK15115 response regulator Gl 99.0 1.2E-09 2.5E-14 116.5 10.2 178 112-308 159-379 (444)
213 PRK08769 DNA polymerase III su 99.0 1.1E-08 2.5E-13 103.0 16.2 134 106-254 22-183 (319)
214 PRK07993 DNA polymerase III su 99.0 9.3E-09 2E-13 104.7 15.5 131 106-254 20-178 (334)
215 COG1220 HslU ATP-dependent pro 99.0 4.3E-09 9.3E-14 103.2 12.0 81 171-253 252-346 (444)
216 KOG2035 Replication factor C, 99.0 2.1E-08 4.5E-13 96.1 15.9 181 69-285 5-225 (351)
217 PRK12377 putative replication 99.0 6.7E-09 1.5E-13 101.1 12.9 100 111-221 102-206 (248)
218 KOG2680 DNA helicase TIP49, TB 99.0 3E-08 6.5E-13 95.8 16.7 91 221-314 339-430 (454)
219 PRK06090 DNA polymerase III su 98.9 1.6E-08 3.4E-13 101.9 14.6 131 106-254 21-178 (319)
220 KOG0745 Putative ATP-dependent 98.9 4.2E-09 9E-14 106.3 10.2 95 111-205 227-331 (564)
221 PF07726 AAA_3: ATPase family 98.9 3.2E-10 6.9E-15 97.5 2.0 111 112-234 1-129 (131)
222 TIGR01818 ntrC nitrogen regula 98.9 9.6E-09 2.1E-13 110.0 13.4 206 76-310 133-381 (463)
223 PRK13765 ATP-dependent proteas 98.9 4.5E-09 9.7E-14 114.9 10.2 100 211-312 277-399 (637)
224 COG3283 TyrR Transcriptional r 98.9 1.2E-08 2.5E-13 100.8 11.6 212 70-307 197-443 (511)
225 PRK07952 DNA replication prote 98.9 1.9E-08 4.1E-13 97.7 12.5 100 111-221 100-205 (244)
226 PF14532 Sigma54_activ_2: Sigm 98.9 4.5E-09 9.7E-14 93.5 7.0 106 80-220 1-109 (138)
227 PRK10365 transcriptional regul 98.9 9.1E-09 2E-13 109.5 10.2 203 78-309 140-385 (441)
228 PRK08181 transposase; Validate 98.8 3.9E-08 8.3E-13 97.0 13.1 70 111-182 107-180 (269)
229 PRK13406 bchD magnesium chelat 98.8 3.7E-08 8.1E-13 107.0 13.4 189 111-315 26-252 (584)
230 PF03215 Rad17: Rad17 cell cyc 98.8 6.2E-08 1.3E-12 103.8 14.9 209 65-294 7-269 (519)
231 KOG2227 Pre-initiation complex 98.8 1.4E-07 3.1E-12 96.5 16.4 202 77-296 150-382 (529)
232 COG3284 AcoR Transcriptional a 98.8 6.9E-09 1.5E-13 110.0 6.2 180 112-311 338-555 (606)
233 PRK08939 primosomal protein Dn 98.8 4.5E-08 9.8E-13 98.5 11.2 102 73-181 123-229 (306)
234 PRK08699 DNA polymerase III su 98.8 4E-08 8.6E-13 99.8 10.8 133 107-254 18-183 (325)
235 PF01637 Arch_ATPase: Archaeal 98.7 7.8E-08 1.7E-12 92.5 11.8 183 80-283 2-232 (234)
236 PRK06835 DNA replication prote 98.7 4.1E-08 8.9E-13 99.6 10.1 100 111-221 184-289 (329)
237 PF13173 AAA_14: AAA domain 98.7 9.6E-08 2.1E-12 83.7 10.7 118 111-247 3-126 (128)
238 COG1484 DnaC DNA replication p 98.7 1.1E-07 2.4E-12 93.3 11.3 70 110-181 105-179 (254)
239 PRK06526 transposase; Provisio 98.7 3.7E-08 8E-13 96.5 7.9 100 110-221 98-201 (254)
240 KOG1970 Checkpoint RAD17-RFC c 98.7 4.5E-07 9.8E-12 94.5 15.4 211 65-293 70-320 (634)
241 PRK09183 transposase/IS protei 98.6 1.2E-07 2.6E-12 93.4 9.8 71 110-181 102-176 (259)
242 PRK06921 hypothetical protein; 98.6 2.7E-07 5.9E-12 91.2 12.1 68 110-180 117-188 (266)
243 PF12775 AAA_7: P-loop contain 98.6 3.1E-07 6.8E-12 91.0 11.6 133 111-257 34-194 (272)
244 KOG1051 Chaperone HSP104 and r 98.6 3.8E-07 8.1E-12 101.7 12.7 130 77-222 562-712 (898)
245 PF01695 IstB_IS21: IstB-like 98.6 7.8E-08 1.7E-12 89.3 6.2 70 110-181 47-120 (178)
246 PRK05917 DNA polymerase III su 98.6 1E-06 2.2E-11 87.3 13.6 123 106-243 15-154 (290)
247 PF13401 AAA_22: AAA domain; P 98.5 3.5E-07 7.6E-12 80.0 8.4 97 111-218 5-125 (131)
248 PF00493 MCM: MCM2/3/5 family 98.5 4.1E-08 8.9E-13 100.2 2.4 182 110-312 57-325 (331)
249 COG3267 ExeA Type II secretory 98.5 5.2E-06 1.1E-10 79.3 15.8 184 112-307 53-267 (269)
250 KOG0480 DNA replication licens 98.5 7.5E-07 1.6E-11 94.1 10.0 221 75-313 343-643 (764)
251 COG1241 MCM2 Predicted ATPase 98.5 7.9E-07 1.7E-11 97.0 10.6 220 76-313 285-592 (682)
252 PRK07276 DNA polymerase III su 98.4 6E-06 1.3E-10 82.1 15.6 129 107-253 21-172 (290)
253 PF05729 NACHT: NACHT domain 98.4 2.3E-06 5E-11 77.7 11.2 139 112-258 2-165 (166)
254 COG4618 ArpD ABC-type protease 98.4 1.4E-07 3.1E-12 97.5 3.5 111 9-132 245-384 (580)
255 cd01120 RecA-like_NTPases RecA 98.4 7.4E-07 1.6E-11 80.5 7.9 107 113-223 2-139 (165)
256 PF03969 AFG1_ATPase: AFG1-lik 98.4 2.2E-06 4.7E-11 88.2 11.5 140 107-270 59-207 (362)
257 PF12774 AAA_6: Hydrolytic ATP 98.4 5E-06 1.1E-10 80.3 12.7 125 111-252 33-176 (231)
258 KOG0478 DNA replication licens 98.3 4.6E-06 9.9E-11 89.0 12.3 133 111-254 463-624 (804)
259 PRK05818 DNA polymerase III su 98.3 1E-05 2.3E-10 78.5 13.2 121 108-243 5-147 (261)
260 PRK07132 DNA polymerase III su 98.3 2.4E-05 5.1E-10 78.5 15.7 128 107-254 15-160 (299)
261 TIGR02237 recomb_radB DNA repa 98.2 6E-06 1.3E-10 78.7 9.9 114 106-219 8-148 (209)
262 PLN03210 Resistant to P. syrin 98.2 1.4E-05 3E-10 94.9 14.9 177 72-278 179-389 (1153)
263 KOG0482 DNA replication licens 98.2 5.2E-06 1.1E-10 85.7 9.0 222 78-314 343-639 (721)
264 PF00931 NB-ARC: NB-ARC domain 98.1 3.8E-05 8.3E-10 76.7 14.1 159 109-286 18-203 (287)
265 KOG1968 Replication factor C, 98.1 1.2E-05 2.7E-10 90.4 10.9 205 71-292 314-535 (871)
266 KOG2383 Predicted ATPase [Gene 98.1 3.5E-05 7.6E-10 77.9 12.4 157 107-290 111-297 (467)
267 cd01124 KaiC KaiC is a circadi 98.1 2.8E-05 6.1E-10 72.4 11.1 32 113-144 2-36 (187)
268 PF00910 RNA_helicase: RNA hel 98.1 1E-05 2.3E-10 68.5 7.3 23 113-135 1-23 (107)
269 PRK08118 topology modulation p 98.1 1.1E-05 2.5E-10 74.0 7.8 101 112-258 3-103 (167)
270 PTZ00202 tuzin; Provisional 98.1 0.00038 8.3E-09 72.1 19.3 178 75-286 260-457 (550)
271 PRK11823 DNA repair protein Ra 98.1 2.3E-05 5E-10 83.2 10.9 79 106-184 76-171 (446)
272 cd01121 Sms Sms (bacterial rad 98.0 3.1E-05 6.6E-10 80.1 10.6 78 107-184 79-173 (372)
273 KOG2543 Origin recognition com 98.0 0.00013 2.7E-09 73.6 14.3 160 78-256 7-193 (438)
274 COG1485 Predicted ATPase [Gene 98.0 3.3E-05 7.2E-10 77.2 9.8 170 75-268 23-208 (367)
275 PHA00729 NTP-binding motif con 98.0 1E-05 2.2E-10 77.2 5.9 24 112-135 19-42 (226)
276 COG4650 RtcR Sigma54-dependent 98.0 2.4E-05 5.1E-10 75.9 7.8 74 111-184 209-297 (531)
277 TIGR01618 phage_P_loop phage n 97.9 3.2E-05 7E-10 73.8 8.2 24 109-132 11-34 (220)
278 COG1618 Predicted nucleotide k 97.9 6.9E-05 1.5E-09 66.8 9.5 26 109-134 4-29 (179)
279 KOG2170 ATPase of the AAA+ sup 97.9 0.00039 8.4E-09 68.1 15.4 94 79-181 84-190 (344)
280 PRK09361 radB DNA repair and r 97.9 5.3E-05 1.2E-09 73.0 9.5 39 106-144 19-60 (225)
281 TIGR02012 tigrfam_recA protein 97.9 5.1E-05 1.1E-09 76.6 9.5 114 106-219 51-190 (321)
282 TIGR02688 conserved hypothetic 97.9 0.00034 7.4E-09 72.4 15.6 93 110-220 209-314 (449)
283 COG5271 MDN1 AAA ATPase contai 97.9 3.1E-05 6.7E-10 89.1 8.3 133 111-258 1544-1705(4600)
284 PF05707 Zot: Zonular occluden 97.9 9.8E-06 2.1E-10 76.3 3.4 123 113-243 3-146 (193)
285 PF13207 AAA_17: AAA domain; P 97.8 1.4E-05 3E-10 68.9 3.9 31 113-143 2-32 (121)
286 PRK08533 flagellar accessory p 97.8 0.00019 4.1E-09 69.5 12.1 76 107-182 21-130 (230)
287 PRK06067 flagellar accessory p 97.8 0.00017 3.6E-09 70.1 11.6 40 106-145 21-63 (234)
288 KOG2228 Origin recognition com 97.8 0.00013 2.8E-09 72.4 10.3 160 78-256 25-219 (408)
289 COG1373 Predicted ATPase (AAA+ 97.8 0.001 2.2E-08 69.7 17.6 134 112-261 39-185 (398)
290 KOG0477 DNA replication licens 97.8 0.00027 5.8E-09 75.0 12.9 60 79-140 451-512 (854)
291 cd01394 radB RadB. The archaea 97.8 0.00014 3E-09 69.8 10.1 39 106-144 15-56 (218)
292 cd00983 recA RecA is a bacter 97.8 0.00013 2.7E-09 73.8 10.1 113 107-219 52-190 (325)
293 PF07693 KAP_NTPase: KAP famil 97.8 0.00041 8.9E-09 70.6 14.1 79 169-258 172-265 (325)
294 KOG1051 Chaperone HSP104 and r 97.8 0.00023 5.1E-09 79.9 12.7 163 75-258 184-365 (898)
295 PF06745 KaiC: KaiC; InterPro 97.7 0.00024 5.3E-09 68.5 11.2 108 106-219 15-159 (226)
296 PRK07261 topology modulation p 97.7 6E-05 1.3E-09 69.5 6.5 33 112-144 2-34 (171)
297 PRK15455 PrkA family serine pr 97.7 4.9E-05 1.1E-09 81.2 6.6 64 74-143 73-137 (644)
298 COG5245 DYN1 Dynein, heavy cha 97.7 0.00017 3.7E-09 82.7 11.0 181 110-300 1494-1722(3164)
299 PRK12723 flagellar biosynthesi 97.7 0.00021 4.5E-09 74.2 10.8 111 109-229 173-307 (388)
300 TIGR00416 sms DNA repair prote 97.7 0.00022 4.7E-09 75.9 11.0 78 106-183 90-184 (454)
301 PHA02624 large T antigen; Prov 97.7 0.00019 4.1E-09 77.1 10.1 121 106-242 427-561 (647)
302 PRK00131 aroK shikimate kinase 97.7 4.6E-05 1E-09 69.9 4.6 33 109-141 3-35 (175)
303 cd01123 Rad51_DMC1_radA Rad51_ 97.7 0.00016 3.5E-09 70.0 8.4 114 106-219 15-168 (235)
304 PRK14722 flhF flagellar biosyn 97.6 0.00018 3.9E-09 74.1 8.9 109 109-228 136-266 (374)
305 PF13671 AAA_33: AAA domain; P 97.6 0.00015 3.3E-09 64.2 7.2 34 113-148 2-35 (143)
306 PRK10536 hypothetical protein; 97.6 0.00029 6.3E-09 68.5 9.5 22 112-133 76-97 (262)
307 COG1116 TauB ABC-type nitrate/ 97.6 0.00017 3.7E-09 69.2 7.7 22 112-133 31-52 (248)
308 COG4088 Predicted nucleotide k 97.6 0.00017 3.6E-09 66.9 7.1 68 112-181 3-85 (261)
309 cd03283 ABC_MutS-like MutS-lik 97.6 0.00027 5.9E-09 66.8 8.9 103 111-223 26-150 (199)
310 cd01393 recA_like RecA is a b 97.6 0.00025 5.5E-09 68.2 8.8 114 106-219 15-167 (226)
311 PF13191 AAA_16: AAA ATPase do 97.6 7E-05 1.5E-09 69.4 4.4 59 79-146 2-63 (185)
312 PF05272 VirE: Virulence-assoc 97.6 0.00054 1.2E-08 64.6 10.4 111 106-242 48-169 (198)
313 PF14516 AAA_35: AAA-like doma 97.6 0.0033 7.2E-08 64.3 17.0 169 111-287 32-241 (331)
314 PF13604 AAA_30: AAA domain; P 97.6 0.00019 4.2E-09 67.7 7.4 97 112-220 20-132 (196)
315 PRK04296 thymidine kinase; Pro 97.6 0.00039 8.5E-09 65.3 9.4 70 112-181 4-90 (190)
316 PRK05973 replicative DNA helic 97.6 0.00093 2E-08 64.6 12.1 39 106-144 60-101 (237)
317 PF06309 Torsin: Torsin; Inte 97.6 0.00061 1.3E-08 58.8 9.6 52 77-134 25-77 (127)
318 KOG0481 DNA replication licens 97.6 0.00034 7.3E-09 72.7 9.3 59 78-139 332-393 (729)
319 cd00984 DnaB_C DnaB helicase C 97.6 0.00075 1.6E-08 65.7 11.5 39 106-144 9-51 (242)
320 cd00046 DEXDc DEAD-like helica 97.5 0.00066 1.4E-08 58.8 10.0 23 112-134 2-24 (144)
321 PF03266 NTPase_1: NTPase; In 97.5 0.00016 3.5E-09 66.3 6.3 23 112-134 1-23 (168)
322 PRK06762 hypothetical protein; 97.5 0.0003 6.4E-09 64.3 7.8 39 110-148 2-40 (166)
323 TIGR03877 thermo_KaiC_1 KaiC d 97.5 0.00076 1.6E-08 65.6 11.0 40 106-145 17-59 (237)
324 TIGR02858 spore_III_AA stage I 97.5 0.00026 5.7E-09 70.0 7.7 94 111-221 112-229 (270)
325 PRK05800 cobU adenosylcobinami 97.5 0.00066 1.4E-08 62.5 9.8 34 112-145 3-36 (170)
326 PRK09354 recA recombinase A; P 97.5 0.00041 8.9E-09 70.7 9.1 111 107-217 57-193 (349)
327 PRK09376 rho transcription ter 97.5 0.00032 7E-09 72.0 8.3 23 113-135 172-194 (416)
328 cd01131 PilT Pilus retraction 97.5 0.00043 9.4E-09 65.4 8.6 67 112-178 3-83 (198)
329 PRK14974 cell division protein 97.5 0.0015 3.2E-08 66.6 13.0 36 109-144 139-177 (336)
330 PRK13947 shikimate kinase; Pro 97.5 0.00012 2.6E-09 67.2 4.3 31 112-142 3-33 (171)
331 PRK00625 shikimate kinase; Pro 97.4 0.00013 2.8E-09 67.3 4.3 31 112-142 2-32 (173)
332 cd01128 rho_factor Transcripti 97.4 0.00077 1.7E-08 65.9 9.9 26 111-136 17-42 (249)
333 COG3854 SpoIIIAA ncharacterize 97.4 0.00089 1.9E-08 63.2 9.6 70 112-181 139-230 (308)
334 TIGR03574 selen_PSTK L-seryl-t 97.4 0.001 2.2E-08 65.2 10.6 35 113-147 2-39 (249)
335 PRK13948 shikimate kinase; Pro 97.4 0.00033 7.1E-09 65.2 6.7 43 108-152 8-50 (182)
336 PRK03839 putative kinase; Prov 97.4 0.00013 2.9E-09 67.6 3.9 31 112-142 2-32 (180)
337 PRK06581 DNA polymerase III su 97.4 0.0031 6.7E-08 60.5 13.0 136 108-258 13-163 (263)
338 KOG3347 Predicted nucleotide k 97.4 0.00013 2.7E-09 64.1 3.3 31 112-142 9-39 (176)
339 COG0703 AroK Shikimate kinase 97.4 0.00043 9.3E-09 63.1 6.9 32 111-142 3-34 (172)
340 TIGR03878 thermo_KaiC_2 KaiC d 97.4 0.0014 3E-08 64.7 11.1 39 106-144 32-73 (259)
341 cd03216 ABC_Carb_Monos_I This 97.4 0.00093 2E-08 61.0 9.1 106 108-223 24-144 (163)
342 PF00437 T2SE: Type II/IV secr 97.4 0.00037 8.1E-09 69.1 6.9 99 72-180 99-208 (270)
343 PRK00771 signal recognition pa 97.4 0.0022 4.8E-08 67.7 13.0 39 108-146 93-134 (437)
344 cd00464 SK Shikimate kinase (S 97.4 0.00017 3.7E-09 64.8 4.1 31 112-142 1-31 (154)
345 cd01122 GP4d_helicase GP4d_hel 97.4 0.0011 2.4E-08 65.7 10.1 39 106-144 26-68 (271)
346 TIGR02782 TrbB_P P-type conjug 97.3 0.0002 4.3E-09 72.1 4.6 69 111-179 133-214 (299)
347 PRK13949 shikimate kinase; Pro 97.3 0.00019 4.1E-09 66.1 4.0 31 112-142 3-33 (169)
348 PF00448 SRP54: SRP54-type pro 97.3 0.0017 3.7E-08 61.2 10.5 108 110-225 1-131 (196)
349 COG1102 Cmk Cytidylate kinase 97.3 0.00019 4E-09 64.1 3.5 28 113-140 3-30 (179)
350 cd03281 ABC_MSH5_euk MutS5 hom 97.3 0.0018 4E-08 61.9 10.7 23 110-132 29-51 (213)
351 cd00227 CPT Chloramphenicol (C 97.3 0.00024 5.2E-09 65.7 4.3 37 111-147 3-39 (175)
352 PRK04841 transcriptional regul 97.3 0.0024 5.2E-08 74.3 13.6 157 111-285 33-225 (903)
353 PLN02200 adenylate kinase fami 97.3 0.00035 7.7E-09 67.8 5.5 42 106-149 39-80 (234)
354 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00023 4.9E-09 66.2 4.0 34 113-148 2-35 (183)
355 PRK14532 adenylate kinase; Pro 97.3 0.00025 5.3E-09 66.3 4.1 36 112-149 2-37 (188)
356 TIGR03880 KaiC_arch_3 KaiC dom 97.3 0.0027 5.8E-08 61.2 11.3 40 106-145 12-54 (224)
357 PRK14531 adenylate kinase; Pro 97.3 0.0003 6.4E-09 65.6 4.5 35 111-147 3-37 (183)
358 PRK06217 hypothetical protein; 97.3 0.00028 6E-09 65.8 4.2 31 112-142 3-33 (183)
359 cd03222 ABC_RNaseL_inhibitor T 97.2 0.0021 4.6E-08 59.5 9.9 68 111-179 26-99 (177)
360 PRK11889 flhF flagellar biosyn 97.2 0.0069 1.5E-07 62.5 14.3 36 109-144 240-278 (436)
361 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.0016 3.5E-08 58.2 8.8 70 109-180 25-99 (144)
362 cd02020 CMPK Cytidine monophos 97.2 0.00028 6.1E-09 62.7 3.9 30 113-142 2-31 (147)
363 cd00544 CobU Adenosylcobinamid 97.2 0.0035 7.7E-08 57.6 11.1 70 113-184 2-88 (169)
364 cd01130 VirB11-like_ATPase Typ 97.2 0.00037 8.1E-09 65.1 4.7 69 111-179 26-110 (186)
365 COG4619 ABC-type uncharacteriz 97.2 0.0015 3.3E-08 58.8 8.0 25 109-133 28-52 (223)
366 PRK06547 hypothetical protein; 97.2 0.00037 8.1E-09 64.2 4.4 35 108-142 13-47 (172)
367 cd02027 APSK Adenosine 5'-phos 97.2 0.0014 3.1E-08 58.9 8.0 35 113-147 2-39 (149)
368 COG1126 GlnQ ABC-type polar am 97.2 0.00071 1.5E-08 63.5 6.1 22 111-132 29-50 (240)
369 PRK12339 2-phosphoglycerate ki 97.2 0.0033 7.1E-08 59.3 10.8 30 110-139 3-32 (197)
370 cd02021 GntK Gluconate kinase 97.2 0.00033 7.2E-09 62.8 3.8 28 113-140 2-29 (150)
371 PRK04301 radA DNA repair and r 97.2 0.0015 3.3E-08 66.5 9.1 114 106-219 98-251 (317)
372 TIGR01420 pilT_fam pilus retra 97.2 0.00069 1.5E-08 69.7 6.6 69 111-179 123-205 (343)
373 PLN02674 adenylate kinase 97.2 0.00075 1.6E-08 65.6 6.4 38 110-149 31-68 (244)
374 PF04665 Pox_A32: Poxvirus A32 97.2 0.0048 1E-07 59.7 11.7 133 109-256 12-170 (241)
375 PTZ00088 adenylate kinase 1; P 97.2 0.00047 1E-08 66.6 4.8 33 110-142 6-38 (229)
376 PHA02774 E1; Provisional 97.1 0.0011 2.4E-08 71.1 7.8 33 111-143 435-468 (613)
377 KOG0058 Peptide exporter, ABC 97.1 0.00092 2E-08 72.8 7.3 27 106-132 490-516 (716)
378 cd01125 repA Hexameric Replica 97.1 0.003 6.4E-08 61.5 10.3 21 113-133 4-24 (239)
379 PRK13900 type IV secretion sys 97.1 0.00097 2.1E-08 68.1 7.1 69 111-179 161-245 (332)
380 PF10236 DAP3: Mitochondrial r 97.1 0.023 4.9E-07 57.6 17.0 126 158-284 142-308 (309)
381 COG0563 Adk Adenylate kinase a 97.1 0.00061 1.3E-08 63.2 5.1 33 112-146 2-34 (178)
382 PRK12724 flagellar biosynthesi 97.1 0.0041 8.8E-08 64.8 11.6 37 109-145 222-262 (432)
383 TIGR01313 therm_gnt_kin carboh 97.1 0.00036 7.8E-09 63.6 3.5 28 113-140 1-28 (163)
384 PRK04328 hypothetical protein; 97.1 0.0041 9E-08 60.9 11.2 38 106-143 19-59 (249)
385 cd01428 ADK Adenylate kinase ( 97.1 0.00041 8.8E-09 65.0 4.0 34 113-148 2-35 (194)
386 PRK13695 putative NTPase; Prov 97.1 0.0036 7.8E-08 57.7 10.1 23 112-134 2-24 (174)
387 PRK13946 shikimate kinase; Pro 97.1 0.00044 9.5E-09 64.6 4.0 34 109-142 9-42 (184)
388 PRK14530 adenylate kinase; Pro 97.1 0.00046 9.9E-09 66.1 4.2 30 112-141 5-34 (215)
389 COG2274 SunT ABC-type bacterio 97.1 0.0011 2.4E-08 74.1 7.7 69 156-242 614-682 (709)
390 PRK08233 hypothetical protein; 97.1 0.0016 3.4E-08 60.2 7.7 33 111-143 4-37 (182)
391 TIGR02238 recomb_DMC1 meiotic 97.1 0.0022 4.8E-08 64.9 9.2 112 107-218 93-243 (313)
392 PRK05057 aroK shikimate kinase 97.1 0.00055 1.2E-08 63.2 4.5 34 110-143 4-37 (172)
393 TIGR03881 KaiC_arch_4 KaiC dom 97.1 0.004 8.7E-08 60.1 10.7 38 106-143 16-56 (229)
394 TIGR02236 recomb_radA DNA repa 97.1 0.002 4.2E-08 65.4 8.9 39 107-145 92-139 (310)
395 PRK03731 aroL shikimate kinase 97.1 0.00057 1.2E-08 62.8 4.4 32 111-142 3-34 (171)
396 PF13481 AAA_25: AAA domain; P 97.1 0.0025 5.4E-08 59.6 8.8 73 112-184 34-156 (193)
397 TIGR02655 circ_KaiC circadian 97.1 0.0033 7.1E-08 67.8 10.8 77 106-182 259-366 (484)
398 PRK06696 uridine kinase; Valid 97.1 0.0013 2.8E-08 63.4 6.9 40 109-148 21-63 (223)
399 cd03115 SRP The signal recogni 97.1 0.0076 1.6E-07 55.4 11.8 35 112-146 2-39 (173)
400 PTZ00494 tuzin-like protein; P 97.1 0.073 1.6E-06 55.4 19.6 204 78-315 372-594 (664)
401 COG2805 PilT Tfp pilus assembl 97.1 0.0029 6.2E-08 62.2 9.1 111 112-246 127-251 (353)
402 COG3842 PotA ABC-type spermidi 97.1 0.0011 2.4E-08 67.5 6.5 56 158-222 143-198 (352)
403 cd03238 ABC_UvrA The excision 97.1 0.0039 8.5E-08 57.7 9.6 24 109-132 20-43 (176)
404 PRK10867 signal recognition pa 97.0 0.013 2.7E-07 61.9 14.5 75 107-181 97-195 (433)
405 COG4178 ABC-type uncharacteriz 97.0 0.0025 5.4E-08 69.0 9.3 27 107-133 416-442 (604)
406 PRK08154 anaerobic benzoate ca 97.0 0.002 4.3E-08 65.3 8.2 35 107-141 130-164 (309)
407 cd01129 PulE-GspE PulE/GspE Th 97.0 0.0017 3.7E-08 64.2 7.5 95 73-180 56-160 (264)
408 PLN03187 meiotic recombination 97.0 0.0031 6.7E-08 64.5 9.5 110 109-218 125-273 (344)
409 PRK13833 conjugal transfer pro 97.0 0.00084 1.8E-08 68.0 5.4 69 111-179 145-225 (323)
410 PRK14528 adenylate kinase; Pro 97.0 0.00064 1.4E-08 63.6 4.2 30 112-141 3-32 (186)
411 smart00534 MUTSac ATPase domai 97.0 0.0034 7.5E-08 58.6 9.1 19 113-131 2-20 (185)
412 COG5271 MDN1 AAA ATPase contai 97.0 0.0028 6.2E-08 73.9 9.8 134 112-257 890-1048(4600)
413 PF12780 AAA_8: P-loop contain 97.0 0.0052 1.1E-07 60.8 10.7 90 78-179 9-99 (268)
414 PF01745 IPT: Isopentenyl tran 97.0 0.0011 2.5E-08 62.1 5.7 131 112-255 3-138 (233)
415 TIGR02655 circ_KaiC circadian 97.0 0.0056 1.2E-07 66.0 11.9 39 106-144 17-59 (484)
416 PF02562 PhoH: PhoH-like prote 97.0 0.0011 2.3E-08 62.7 5.6 23 112-134 21-43 (205)
417 PF09848 DUF2075: Uncharacteri 97.0 0.0033 7.1E-08 65.0 9.7 23 112-134 3-25 (352)
418 TIGR03499 FlhF flagellar biosy 97.0 0.0032 7E-08 62.9 9.2 38 109-146 193-235 (282)
419 COG1936 Predicted nucleotide k 97.0 0.00052 1.1E-08 62.1 3.1 30 112-142 2-31 (180)
420 COG1136 SalX ABC-type antimicr 97.0 0.0042 9.2E-08 59.4 9.4 22 111-132 32-53 (226)
421 PF08433 KTI12: Chromatin asso 97.0 0.0043 9.3E-08 61.4 9.9 70 112-181 3-82 (270)
422 PRK04040 adenylate kinase; Pro 97.0 0.00074 1.6E-08 63.2 4.2 30 110-139 2-33 (188)
423 cd03246 ABCC_Protease_Secretio 97.0 0.0045 9.8E-08 57.0 9.4 103 110-222 28-157 (173)
424 COG1066 Sms Predicted ATP-depe 97.0 0.0053 1.1E-07 62.9 10.4 145 111-259 94-259 (456)
425 cd03230 ABC_DR_subfamily_A Thi 97.0 0.0032 7E-08 58.0 8.4 25 110-134 26-50 (173)
426 PRK13894 conjugal transfer ATP 97.0 0.00097 2.1E-08 67.7 5.2 69 111-179 149-229 (319)
427 PF13245 AAA_19: Part of AAA d 97.0 0.0012 2.7E-08 52.0 4.7 32 112-143 12-50 (76)
428 cd00267 ABC_ATPase ABC (ATP-bi 97.0 0.0028 6.2E-08 57.3 7.8 105 110-224 25-143 (157)
429 cd03228 ABCC_MRP_Like The MRP 97.0 0.002 4.3E-08 59.3 6.8 26 109-134 27-52 (171)
430 TIGR02788 VirB11 P-type DNA tr 97.0 0.0016 3.6E-08 65.9 6.7 71 109-179 143-228 (308)
431 PRK13764 ATPase; Provisional 96.9 0.0011 2.3E-08 72.4 5.6 69 111-180 258-335 (602)
432 PRK14527 adenylate kinase; Pro 96.9 0.00075 1.6E-08 63.3 3.9 32 109-140 5-36 (191)
433 cd03243 ABC_MutS_homologs The 96.9 0.0041 9E-08 58.9 9.0 22 111-132 30-51 (202)
434 PRK13851 type IV secretion sys 96.9 0.0015 3.2E-08 66.9 6.2 70 110-179 162-246 (344)
435 cd03247 ABCC_cytochrome_bd The 96.9 0.0068 1.5E-07 56.1 10.2 27 108-134 26-52 (178)
436 PRK02496 adk adenylate kinase; 96.9 0.00077 1.7E-08 62.8 3.8 30 112-141 3-32 (184)
437 TIGR01360 aden_kin_iso1 adenyl 96.9 0.00085 1.8E-08 62.4 4.1 29 112-140 5-33 (188)
438 COG1120 FepC ABC-type cobalami 96.9 0.0052 1.1E-07 60.0 9.5 24 111-134 29-52 (258)
439 PTZ00035 Rad51 protein; Provis 96.9 0.0045 9.8E-08 63.4 9.6 110 108-217 116-264 (337)
440 TIGR01351 adk adenylate kinase 96.9 0.00082 1.8E-08 64.1 3.9 28 113-140 2-29 (210)
441 PRK13808 adenylate kinase; Pro 96.9 0.0039 8.4E-08 63.3 8.8 34 112-147 2-35 (333)
442 PHA02530 pseT polynucleotide k 96.9 0.0027 5.9E-08 63.9 7.8 37 110-147 2-38 (300)
443 TIGR02525 plasmid_TraJ plasmid 96.9 0.0017 3.8E-08 67.1 6.3 68 112-179 151-235 (372)
444 TIGR00064 ftsY signal recognit 96.9 0.023 5.1E-07 56.4 14.1 38 108-145 70-110 (272)
445 COG1121 ZnuC ABC-type Mn/Zn tr 96.9 0.0018 3.9E-08 62.9 6.0 58 156-223 144-201 (254)
446 TIGR02533 type_II_gspE general 96.9 0.0034 7.4E-08 67.4 8.6 94 73-180 218-322 (486)
447 cd02019 NK Nucleoside/nucleoti 96.9 0.0016 3.5E-08 50.3 4.5 22 113-134 2-23 (69)
448 cd03223 ABCD_peroxisomal_ALDP 96.9 0.0048 1E-07 56.5 8.5 26 109-134 26-51 (166)
449 TIGR02239 recomb_RAD51 DNA rep 96.9 0.0039 8.5E-08 63.3 8.6 112 107-218 93-243 (316)
450 PF06414 Zeta_toxin: Zeta toxi 96.9 0.0029 6.3E-08 59.8 7.3 42 108-149 13-55 (199)
451 PRK00279 adk adenylate kinase; 96.9 0.00098 2.1E-08 63.8 4.1 29 112-140 2-30 (215)
452 COG2874 FlaH Predicted ATPases 96.9 0.0071 1.5E-07 56.7 9.4 120 103-230 19-176 (235)
453 PRK09519 recA DNA recombinatio 96.9 0.0044 9.5E-08 69.4 9.5 114 106-219 56-195 (790)
454 TIGR01425 SRP54_euk signal rec 96.8 0.022 4.7E-07 59.9 14.0 39 108-146 98-139 (429)
455 cd03280 ABC_MutS2 MutS2 homolo 96.8 0.0082 1.8E-07 56.7 10.1 21 111-131 29-49 (200)
456 smart00487 DEXDc DEAD-like hel 96.8 0.0061 1.3E-07 56.1 9.1 33 111-143 25-62 (201)
457 PF00406 ADK: Adenylate kinase 96.8 0.002 4.3E-08 58.0 5.6 34 115-150 1-34 (151)
458 TIGR01448 recD_rel helicase, p 96.8 0.004 8.6E-08 70.3 9.1 100 112-224 340-458 (720)
459 PF13238 AAA_18: AAA domain; P 96.8 0.0009 1.9E-08 57.8 3.2 22 113-134 1-22 (129)
460 cd03214 ABC_Iron-Siderophores_ 96.8 0.0062 1.3E-07 56.5 8.9 26 109-134 24-49 (180)
461 COG1117 PstB ABC-type phosphat 96.8 0.01 2.2E-07 55.8 9.8 22 111-132 34-55 (253)
462 TIGR01526 nadR_NMN_Atrans nico 96.8 0.0035 7.6E-08 63.9 7.7 37 111-147 163-199 (325)
463 PLN03186 DNA repair protein RA 96.8 0.0036 7.8E-08 64.0 7.7 112 108-219 121-271 (342)
464 PRK09302 circadian clock prote 96.8 0.011 2.5E-07 64.1 11.9 40 106-145 27-70 (509)
465 PRK01184 hypothetical protein; 96.8 0.0013 2.8E-08 61.2 3.9 29 112-141 3-31 (184)
466 PRK05703 flhF flagellar biosyn 96.8 0.023 4.9E-07 60.1 13.6 37 110-146 221-262 (424)
467 TIGR00150 HI0065_YjeE ATPase, 96.8 0.0029 6.4E-08 55.5 5.8 27 111-137 23-49 (133)
468 PRK10416 signal recognition pa 96.7 0.025 5.4E-07 57.5 13.3 37 108-144 112-151 (318)
469 TIGR00152 dephospho-CoA kinase 96.7 0.0025 5.4E-08 59.6 5.7 35 113-149 2-36 (188)
470 COG3839 MalK ABC-type sugar tr 96.7 0.0042 9E-08 63.0 7.6 22 112-133 31-52 (338)
471 cd03282 ABC_MSH4_euk MutS4 hom 96.7 0.014 3.1E-07 55.3 10.8 22 111-132 30-51 (204)
472 COG1125 OpuBA ABC-type proline 96.7 0.0032 7E-08 60.5 6.3 21 112-132 29-49 (309)
473 PRK04182 cytidylate kinase; Pr 96.7 0.0015 3.2E-08 60.3 4.0 29 112-140 2-30 (180)
474 PF08303 tRNA_lig_kinase: tRNA 96.7 0.016 3.5E-07 52.3 10.3 129 116-259 5-146 (168)
475 COG1118 CysA ABC-type sulfate/ 96.7 0.005 1.1E-07 60.7 7.7 22 111-132 29-50 (345)
476 PF08298 AAA_PrkA: PrkA AAA do 96.7 0.0056 1.2E-07 62.0 8.3 84 75-164 58-143 (358)
477 TIGR00959 ffh signal recogniti 96.7 0.028 6E-07 59.3 13.8 74 108-181 97-194 (428)
478 cd03213 ABCG_EPDR ABCG transpo 96.7 0.0096 2.1E-07 56.0 9.5 26 109-134 34-59 (194)
479 COG0467 RAD55 RecA-superfamily 96.7 0.018 3.8E-07 56.8 11.8 40 106-145 19-61 (260)
480 PRK00889 adenylylsulfate kinas 96.7 0.008 1.7E-07 55.4 8.7 37 110-146 4-43 (175)
481 PF13521 AAA_28: AAA domain; P 96.7 0.0013 2.8E-08 59.9 3.4 30 113-143 2-31 (163)
482 TIGR00767 rho transcription te 96.7 0.0047 1E-07 63.8 7.6 24 112-135 170-193 (415)
483 PRK05541 adenylylsulfate kinas 96.7 0.0023 5E-08 59.1 5.0 28 108-135 5-32 (176)
484 KOG3928 Mitochondrial ribosome 96.7 0.079 1.7E-06 54.4 16.1 49 237-286 405-457 (461)
485 PRK08099 bifunctional DNA-bind 96.7 0.0043 9.3E-08 65.0 7.4 32 110-141 219-250 (399)
486 TIGR02173 cyt_kin_arch cytidyl 96.7 0.0017 3.7E-08 59.4 3.9 29 112-140 2-30 (171)
487 cd03215 ABC_Carb_Monos_II This 96.6 0.012 2.6E-07 54.6 9.5 26 109-134 25-50 (182)
488 cd03229 ABC_Class3 This class 96.6 0.0072 1.6E-07 55.9 7.8 25 110-134 26-50 (178)
489 PF13479 AAA_24: AAA domain 96.6 0.0037 7.9E-08 59.8 5.9 68 110-181 3-80 (213)
490 COG1855 ATPase (PilT family) [ 96.6 0.0021 4.5E-08 66.2 4.3 45 73-134 243-287 (604)
491 PRK09302 circadian clock prote 96.6 0.014 2.9E-07 63.5 10.9 78 106-183 269-377 (509)
492 PF08423 Rad51: Rad51; InterP 96.6 0.0058 1.3E-07 60.2 7.3 112 114-225 42-192 (256)
493 COG1124 DppF ABC-type dipeptid 96.6 0.009 2E-07 57.2 8.2 22 111-132 34-55 (252)
494 CHL00195 ycf46 Ycf46; Provisio 96.6 0.063 1.4E-06 57.7 15.5 124 169-310 81-205 (489)
495 PRK14526 adenylate kinase; Pro 96.6 0.0022 4.8E-08 61.2 4.0 34 112-147 2-35 (211)
496 KOG0479 DNA replication licens 96.6 0.0073 1.6E-07 64.0 8.0 161 78-254 302-496 (818)
497 cd03232 ABC_PDR_domain2 The pl 96.6 0.018 4E-07 53.9 10.2 24 110-133 33-56 (192)
498 cd03227 ABC_Class2 ABC-type Cl 96.6 0.0073 1.6E-07 55.0 7.3 23 110-132 21-43 (162)
499 cd00561 CobA_CobO_BtuR ATP:cor 96.5 0.0093 2E-07 54.0 7.7 23 112-134 4-26 (159)
500 PLN02199 shikimate kinase 96.5 0.0051 1.1E-07 61.1 6.5 32 111-142 103-134 (303)
No 1
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-109 Score=828.38 Aligned_cols=490 Identities=66% Similarity=1.008 Sum_probs=450.2
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCcccccccccCCCC-cCCccccc
Q 009974 2 VDPKVSNKSRFAQELISTILFTVAVGLVWLMGAAALQKYIGSLGGIGTSGVGSSSSYAPKELNKEVMPEKN-VKTFKDVK 80 (521)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~f~di~ 80 (521)
+.|..+..+.+...+..++. +.+++.+|+++...+....+. +++.....+ ++..+.|+.. .++|+||.
T Consensus 239 ~e~~~s~~~~~~~~~~k~i~-~~i~~~~~~~G~~~~~~~~~l-~~i~~~~~g---------l~~ev~p~~~~nv~F~dVk 307 (752)
T KOG0734|consen 239 VEGFLSNRTTKAGRLVKTIR-TTIVGYLLLLGIYALLENTGL-SGIFRSTTG---------LDSEVDPEQMKNVTFEDVK 307 (752)
T ss_pred eccccccccchHHHHHHHHH-HHHHHHHHHHHHHHHhhcccc-ccccccccc---------cccccChhhhccccccccc
Confidence 34556666666666666666 566677777777766654432 222221111 2344455544 57899999
Q ss_pred CcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhhhhhHHHHH
Q 009974 81 GCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRS 160 (521)
Q Consensus 81 G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~i~~ 160 (521)
|++++|++|++++++|++|.+|.++|++.|+||||+||||||||+||||+|.++++||++.++++|.+.|+|.+++++|+
T Consensus 308 G~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRd 387 (752)
T KOG0734|consen 308 GVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRD 387 (752)
T ss_pred ChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEccccccccCCcCCCc-ccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEe
Q 009974 161 LFQAAKKKAPCIIFIDEIDAVGSTRKQWEG-HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIV 239 (521)
Q Consensus 161 ~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~-~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~ 239 (521)
+|..|+..+||||||||||+++++|..++. +.++++||||.+||||..+.+||||++||.|+.||++|.||||||++|.
T Consensus 388 LF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~ 467 (752)
T KOG0734|consen 388 LFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVT 467 (752)
T ss_pred HHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEe
Confidence 999999999999999999999999987665 6789999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcCccc
Q 009974 240 VPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMGTER 319 (521)
Q Consensus 240 ~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~~~~~~~ 319 (521)
+|.||.+.|.+||+.|+.+..+..++|+..||+.|.||||+||+|++|+|+..|+.++...+++.+++.|.+++++|+++
T Consensus 468 Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDrIlMG~ER 547 (752)
T KOG0734|consen 468 VPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDRILMGPER 547 (752)
T ss_pred cCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhhheeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHhhhHHHhhhcCCCCCcceEEEeeCCCCCcceeecCCCccchhcHHHHHHHHHHHhhHHHHHHH
Q 009974 320 KTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQLLARLDVCMGGRVAEEL 399 (521)
Q Consensus 320 ~~~~~~~~~~~~~a~heaghavv~~~~~~~~~v~~v~i~~r~~~~g~~~~~~~~~~~~~t~~~l~~~i~~~LaGraAE~~ 399 (521)
+...++++.++.+||||+|||||+.+.....|++|+||.|||.++|++.++|..+++..||.++++++.||||||+|||+
T Consensus 548 ks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t~~LPe~D~~~~Tk~q~LA~lDV~MGGRvAEEL 627 (752)
T KOG0734|consen 548 KSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHTSQLPEKDRYSITKAQLLARLDVCMGGRVAEEL 627 (752)
T ss_pred cccccChhhhhhhhhhccCceEEEeecCCCccccceeeccCCccccceeecCccchhhHHHHHHHHHHHHhhcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCcchhhHHHHHHHHHHHHHHhcCCCCCCCccccCCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 009974 400 IFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKDR-----PSSEMQSRIDAEVVKLLREAYDRVKALLKKHE 474 (521)
Q Consensus 400 ~~G~~~~~~g~~~Dl~~At~la~~mv~~~Gm~~~~g~~~~~~~-----~~~~~~~~id~ev~~~l~~~~~~a~~iL~~~r 474 (521)
+||.+.+++||+|||++||++|+.||+.||||+.+|++.+... .+..++..||.||+++|+++|+||+.||+.|.
T Consensus 628 IfG~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~~~s~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~ 707 (752)
T KOG0734|consen 628 IFGTDKITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDNSSSLSPRTQELIDAEIKRLLRDSYERAKSILKTHK 707 (752)
T ss_pred hccCCcccccccchHHHHHHHHHHHHHHcCccccccceeeeccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999976432 34556778999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCHHHHHHhhccC
Q 009974 475 KQLHALANALLEYETLSAEEIKRILLPY 502 (521)
Q Consensus 475 ~~l~~la~~Lle~e~l~~~ei~~il~~~ 502 (521)
..+++||++|+++|||+++||++++...
T Consensus 708 kEl~~LA~ALleYETL~A~eik~vl~g~ 735 (752)
T KOG0734|consen 708 KELHALAEALLEYETLDAKEIKRVLKGK 735 (752)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHhcc
Confidence 9999999999999999999999999643
No 2
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-95 Score=764.39 Aligned_cols=485 Identities=55% Similarity=0.846 Sum_probs=445.4
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCcccccccccCCCCcCCcccccCcHHHH
Q 009974 7 SNKSRFAQELISTILFTVAVGLVWLMGAAALQKYIGSLGGIGTSGVGSSSSYAPKELNKEVMPEKNVKTFKDVKGCDDAK 86 (521)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~di~G~~~~k 86 (521)
.+.+.|+..+..++++++++++.|++..+..+. .++.+..+++.++ .+...+.+..++|+|++|++++|
T Consensus 91 ~~~~~~~~~~~~~lp~il~~~~~~~~~~r~~~~----g~g~~~~~~gksk-------ak~~~~~~~~v~F~DVAG~dEak 159 (596)
T COG0465 91 EDNSLLASLLSTWLPFILLIGLGWFFFRRQAQG----GGGGGAFSFGKSK-------AKLYLEDQVKVTFADVAGVDEAK 159 (596)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCCcccCCChHH-------HHHhcccccCcChhhhcCcHHHH
Confidence 445566666777788877887777777654322 1111123333322 23334456778999999999999
Q ss_pred HHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhhhhhHHHHHHHHHHH
Q 009974 87 QELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAK 166 (521)
Q Consensus 87 ~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~ 166 (521)
+++.++++++++|.+|..+|.+.|+|+||+||||||||+||+++|.++++||+++|+++|.++|+|.++.++|++|.+|+
T Consensus 160 eel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAk 239 (596)
T COG0465 160 EELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAK 239 (596)
T ss_pred HHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEEccccccccCCcCC----CcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCC
Q 009974 167 KKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPN 242 (521)
Q Consensus 167 ~~~p~Il~IDEiD~l~~~~~~~----~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~ 242 (521)
+++|||+||||||+++..|... +.+.++++|++|.+||++..+.+|+++++||+|+.+|+||+||||||++|.++.
T Consensus 240 k~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~ 319 (596)
T COG0465 240 KNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVEL 319 (596)
T ss_pred ccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCC
Confidence 9999999999999999988533 335578999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcCcccccc
Q 009974 243 PDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMGTERKTM 322 (521)
Q Consensus 243 P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~~~~~~~~~~ 322 (521)
||...|.+|++.|+++.++..++++..+|+.|+|||++|+.+++|+|+..|++++...|++.|+.+|.+++++|+++++.
T Consensus 320 PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~ 399 (596)
T COG0465 320 PDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSR 399 (596)
T ss_pred cchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccchHHHHHHHHHHhhhHHHhhhcCCCCCcceEEEeeCCCCCcceeecCCCccchhcHHHHHHHHHHHhhHHHHHHHHhC
Q 009974 323 FISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQLLARLDVCMGGRVAEELIFG 402 (521)
Q Consensus 323 ~~~~~~~~~~a~heaghavv~~~~~~~~~v~~v~i~~r~~~~g~~~~~~~~~~~~~t~~~l~~~i~~~LaGraAE~~~~G 402 (521)
.+++.+++.+||||+|||+++++++..++++++||+|||+++||+.+.|.++..++|+.+++++|+++||||||||++||
T Consensus 400 vise~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPrG~alG~t~~~Pe~d~~l~sk~~l~~~i~~~lgGRaAEel~~g 479 (596)
T COG0465 400 VISEAEKKITAYHEAGHALVGLLLPDADPVHKVTIIPRGRALGYTLFLPEEDKYLMSKEELLDRIDVLLGGRAAEELIFG 479 (596)
T ss_pred ccChhhhcchHHHHHHHHHHHHhCCCCcccceeeeccCchhhcchhcCCccccccccHHHHHHHHHHHhCCcHhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhcCCCCCCCccccCC-------------CCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 009974 403 RDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD-------------RPSSEMQSRIDAEVVKLLREAYDRVKAL 469 (521)
Q Consensus 403 ~~~~~~g~~~Dl~~At~la~~mv~~~Gm~~~~g~~~~~~-------------~~~~~~~~~id~ev~~~l~~~~~~a~~i 469 (521)
. ++|||+++|+++||++|+.||++|||++.+|++.+.. ..|+.+++.||.||+++++++|++++++
T Consensus 480 ~-e~ttGa~~D~~~at~~ar~mVt~~Gms~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~ID~evk~ii~~~y~~a~~i 558 (596)
T COG0465 480 Y-EITTGASNDLEKATDLARAMVTEYGMSAKLGPVAYEQVEGVFLGRYQKAKNYSEETAQEIDREVKDIIDEAYERAKEL 558 (596)
T ss_pred c-cccccchhhHHHHHHHHHHhhhhcCcchhhCceehhhcccccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 7999999999999999999999999999999998754 3678899999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHhcccCHHHHHHhhccCC
Q 009974 470 LKKHEKQLHALANALLEYETLSAEEIKRILLPYR 503 (521)
Q Consensus 470 L~~~r~~l~~la~~Lle~e~l~~~ei~~il~~~~ 503 (521)
|.+|++.++.+++.|+++|||++++|+.|+....
T Consensus 559 l~~~~~~l~~~~~~Lle~Eti~~~~i~~i~~~~~ 592 (596)
T COG0465 559 LNENKDALETLAEMLLEKETIDAEEIKDILAGRK 592 (596)
T ss_pred HHHhHHHHHHHHHHHHHhhccCHHHHHHHHhccc
Confidence 9999999999999999999999999999987653
No 3
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-91 Score=743.12 Aligned_cols=436 Identities=53% Similarity=0.830 Sum_probs=415.0
Q ss_pred CCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 69 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 69 ~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
.....++|+||+|++++|++|.++|.+|++|+.|.++|.++|+|+||+||||||||+||+|+|.|+++||+.+++++|.+
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCc-----CCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCC
Q 009974 149 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK-----QWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 223 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~-----~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ 223 (521)
.+.|.+..+++++|..|+.++|||+||||||+++..+. ..+.+.++++||||.+||++....+|+|+++||+|+.
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc
Confidence 99999999999999999999999999999999999884 2344668999999999999999999999999999999
Q ss_pred CCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccC
Q 009974 224 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 302 (521)
Q Consensus 224 ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it 302 (521)
||++++||||||++|.+++|+..+|.+|++.|++...+. +++++..+|..|+||+|+||.++||+|+..|++++...|+
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~ 542 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIG 542 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccc
Confidence 999999999999999999999999999999999998885 7888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccccccccchHHHHHHHHHHhhhHHHhhhcCCCCCcceEEEeeCCCCCcceeecCCCccchhcHHH
Q 009974 303 ATELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQ 382 (521)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~heaghavv~~~~~~~~~v~~v~i~~r~~~~g~~~~~~~~~~~~~t~~~ 382 (521)
..|+.+|+++++.|.+.+...++.++++.+|+||||||+++|++++.+|+.+++|.| |+++||+++.|.++ +..|+++
T Consensus 543 ~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP-GqalG~a~~~P~~~-~l~sk~q 620 (774)
T KOG0731|consen 543 TKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP-GQALGYAQYLPTDD-YLLSKEQ 620 (774)
T ss_pred hhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhccccccCcceeEEecc-CCccceEEECCccc-ccccHHH
Confidence 999999999999999988889999999999999999999999999999999999999 66999999999877 8899999
Q ss_pred HHHHHHHHhhHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHHHhcCCCCCCCccccCC----------CCChHHHHHHH
Q 009974 383 LLARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD----------RPSSEMQSRID 452 (521)
Q Consensus 383 l~~~i~~~LaGraAE~~~~G~~~~~~g~~~Dl~~At~la~~mv~~~Gm~~~~g~~~~~~----------~~~~~~~~~id 452 (521)
|+++|++.|||||||+++|| +.+||||++||++||++|+.||++|||++.+|++++.. .++..+.+.||
T Consensus 621 l~~rm~m~LGGRaAEev~fg-~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~~~~~~~~~p~s~~~~~~Id 699 (774)
T KOG0731|consen 621 LFDRMVMALGGRAAEEVVFG-SEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLLPGDESFRKPYSEKTAQLID 699 (774)
T ss_pred HHHHHHHHhCcchhhheecC-CccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCcccccccccCccchhHHHHHH
Confidence 99999999999999999999 67999999999999999999999999999999988633 34677899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhccCCCCCC
Q 009974 453 AEVVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLPYREGQL 507 (521)
Q Consensus 453 ~ev~~~l~~~~~~a~~iL~~~r~~l~~la~~Lle~e~l~~~ei~~il~~~~~~~~ 507 (521)
.||+++++.+|++|.++|++|++.++.||+.||++|+|+++|+.+++.+++....
T Consensus 700 ~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~~ 754 (774)
T KOG0731|consen 700 TEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGMP 754 (774)
T ss_pred HHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCccc
Confidence 9999999999999999999999999999999999999999999999999887763
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.5e-86 Score=718.90 Aligned_cols=436 Identities=49% Similarity=0.776 Sum_probs=406.8
Q ss_pred CCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 69 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 69 ~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
......+|+||+|.+++++++.+++.++++++.|..+|.+.|+|+||+||||||||++|+++|++++.||++++++++..
T Consensus 175 ~~~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 175 EADTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred ccCCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC----CcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCC
Q 009974 149 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 224 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~----~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~l 224 (521)
.+.|.+...++.+|..|+.+.||||||||+|.++..++.. +...++++++|+.+++++..+.+++||++||+++.+
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~L 334 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDIL 334 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhh
Confidence 9999989999999999999999999999999998765432 234467899999999999888899999999999999
Q ss_pred CccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 009974 225 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTAT 304 (521)
Q Consensus 225 d~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~ 304 (521)
|++++||||||+++.+++|+.++|.+||+.+++......+.++..+|..+.|||++||+++|++|+..|++++...||.+
T Consensus 335 D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~ 414 (638)
T CHL00176 335 DAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMK 414 (638)
T ss_pred hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHH
Confidence 99999999999999999999999999999999988878888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccccchHHHHHHHHHHhhhHHHhhhcCCCCCcceEEEeeCCCCCcceeecCCCccchhcHHHHH
Q 009974 305 ELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQLL 384 (521)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~heaghavv~~~~~~~~~v~~v~i~~r~~~~g~~~~~~~~~~~~~t~~~l~ 384 (521)
|+..|+++++.|.+++. ..++.+++++|||||||||+++++++.++|+++||.|||+++||+.+.|.++....|+.+++
T Consensus 415 dl~~Ai~rv~~g~~~~~-~~~~~~~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~prg~~~G~~~~~p~~~~~~~t~~~l~ 493 (638)
T CHL00176 415 EIDTAIDRVIAGLEGTP-LEDSKNKRLIAYHEVGHAIVGTLLPNHDPVQKVTLIPRGQAKGLTWFTPEEDQSLVSRSQIL 493 (638)
T ss_pred HHHHHHHHHHhhhccCc-cccHHHHHHHHHHhhhhHHHHhhccCCCceEEEEEeecCCCCCceEecCCcccccccHHHHH
Confidence 99999999999887654 56788899999999999999999999999999999999999999999999888999999999
Q ss_pred HHHHHHhhHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHHHhcCCCCCCCccccCC----------------CCChHHH
Q 009974 385 ARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD----------------RPSSEMQ 448 (521)
Q Consensus 385 ~~i~~~LaGraAE~~~~G~~~~~~g~~~Dl~~At~la~~mv~~~Gm~~~~g~~~~~~----------------~~~~~~~ 448 (521)
++|+++|||||||+++||++++++|+++||++||++|+.||++||||+ +|++++.. ..++++.
T Consensus 494 ~~i~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 572 (638)
T CHL00176 494 ARIVGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMVTRFGMSS-IGPISLESNNSTDPFLGRFMQRNSEYSEEIA 572 (638)
T ss_pred HHHHHHhhhHHHHHHhcCCCCcCCCchhHHHHHHHHHHHHHHHhCCCc-CCceeecCCCCcccccccccccccCcCHHHH
Confidence 999999999999999999878999999999999999999999999995 99987632 1367788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhccCCCCC
Q 009974 449 SRIDAEVVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLPYREGQ 506 (521)
Q Consensus 449 ~~id~ev~~~l~~~~~~a~~iL~~~r~~l~~la~~Lle~e~l~~~ei~~il~~~~~~~ 506 (521)
..+|.||+++|++||++|+++|++||+.|++||++|+++|+|+++||++|++.+...+
T Consensus 573 ~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~la~~Lle~Etl~~~ei~~il~~~~~~~ 630 (638)
T CHL00176 573 DKIDMEVRSILHTCYQYAYQILKDNRVLIDLLVELLLQKETIDGDEFREIVNSYTILP 630 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHhhcCCCC
Confidence 9999999999999999999999999999999999999999999999999998875443
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=4.7e-84 Score=707.56 Aligned_cols=435 Identities=54% Similarity=0.881 Sum_probs=409.2
Q ss_pred CCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 69 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 69 ~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
+.....+|+|+.|.+.+++++.+++.++..+..|...+...|+|++|+||||||||++++++|++++.||+.++++++..
T Consensus 144 ~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~ 223 (644)
T PRK10733 144 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 (644)
T ss_pred chhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH
Confidence 44556789999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC----CcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCC
Q 009974 149 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 224 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~----~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~l 224 (521)
.+.+.+...++.+|..++..+||||||||+|.++..++.. .....++++++|.+|+++..+.+++||+|||+|+.|
T Consensus 224 ~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~l 303 (644)
T PRK10733 224 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 303 (644)
T ss_pred hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhc
Confidence 9999999999999999999999999999999998876542 223467899999999999989999999999999999
Q ss_pred CccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 009974 225 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTAT 304 (521)
Q Consensus 225 d~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~ 304 (521)
|++++||||||+++.+++|+.++|.+||+.|++..++..++++..+++.+.|||++||.++|++|+..|++++...|+.+
T Consensus 304 D~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~ 383 (644)
T PRK10733 304 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMV 383 (644)
T ss_pred CHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHH
Confidence 99999999999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccccchHHHHHHHHHHhhhHHHhhhcCCCCCcceEEEeeCCCCCcceeecCCCccchhcHHHHH
Q 009974 305 ELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQLL 384 (521)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~heaghavv~~~~~~~~~v~~v~i~~r~~~~g~~~~~~~~~~~~~t~~~l~ 384 (521)
|++.|++++.+|..++...+++++++++|+||+||||++++++..+++++++|+|||+++||+.+.|.++....|+.+|+
T Consensus 384 d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~prg~~~g~~~~~~~~~~~~~~~~~l~ 463 (644)
T PRK10733 384 EFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLE 463 (644)
T ss_pred HHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEeccCCCcceeEECCCcccccccHHHHH
Confidence 99999999999987777778899999999999999999999999999999999999999999999998888888999999
Q ss_pred HHHHHHhhHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHHHhcCCCCCCCccccCC---------------CCChHHHH
Q 009974 385 ARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD---------------RPSSEMQS 449 (521)
Q Consensus 385 ~~i~~~LaGraAE~~~~G~~~~~~g~~~Dl~~At~la~~mv~~~Gm~~~~g~~~~~~---------------~~~~~~~~ 449 (521)
++|+++|||||||+++||.+++|+|+++||++||+||+.||++||||+.+|++.+.. ..++++.+
T Consensus 464 ~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~~~Gms~~lg~~~~~~~~~~~~lg~~~~~~~~~s~~~~~ 543 (644)
T PRK10733 464 SQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETAR 543 (644)
T ss_pred HHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCccccchhhcccccccccccccccccccCHHHHH
Confidence 999999999999999999888999999999999999999999999999999987642 24677889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhccCC
Q 009974 450 RIDAEVVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLPYR 503 (521)
Q Consensus 450 ~id~ev~~~l~~~~~~a~~iL~~~r~~l~~la~~Lle~e~l~~~ei~~il~~~~ 503 (521)
.+|.||+++|+++|++|+++|++||+.|++||++|+|+|||+++||++|+..+.
T Consensus 544 ~id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~etl~~~ei~~i~~~~~ 597 (644)
T PRK10733 544 IIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARRD 597 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhceeCHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999998753
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.2e-81 Score=673.89 Aligned_cols=474 Identities=54% Similarity=0.835 Sum_probs=420.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCcccccccccCCCCcCCcccccCcHHHHHHHHHH
Q 009974 13 AQELISTILFTVAVGLVWLMGAAALQKYIGSLGGIGTSGVGSSSSYAPKELNKEVMPEKNVKTFKDVKGCDDAKQELVEV 92 (521)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~di~G~~~~k~~L~~~ 92 (521)
..+++...+.++..+..|++... .+.++ |.+....+.+. .+...++.+..+|+||+|++++|+++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~di~g~~~~k~~l~~~ 70 (495)
T TIGR01241 3 LGFLFSLLPPILLLVGVWFFFRR---QMQGG--GGRAFSFGKSK-------AKLLNEEKPKVTFKDVAGIDEAKEELMEI 70 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hccCC--CCCCcCCCCCc-------cccccCCCCCCCHHHhCCHHHHHHHHHHH
Confidence 34445555545566667775543 22221 11122222222 22234556778999999999999999999
Q ss_pred HHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcE
Q 009974 93 VEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCI 172 (521)
Q Consensus 93 v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~I 172 (521)
+.++++++.|...|.++|+|+|||||||||||++|+++|++++.||+.++++++.+.+.|.+.+.++.+|..++..+|||
T Consensus 71 ~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~I 150 (495)
T TIGR01241 71 VDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCI 150 (495)
T ss_pred HHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccccCCcCC----CcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHH
Q 009974 173 IFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGR 248 (521)
Q Consensus 173 l~IDEiD~l~~~~~~~----~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r 248 (521)
|||||+|.++.+++.. .....+++++++.+|+++..+.+++||+|||+|+.||++++||||||+.+++++|+.++|
T Consensus 151 l~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R 230 (495)
T TIGR01241 151 IFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGR 230 (495)
T ss_pred EEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHH
Confidence 9999999998776542 223467899999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcCccccccccchHH
Q 009974 249 QEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMGTERKTMFISEES 328 (521)
Q Consensus 249 ~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~~~~~~~~~~~~~~~~ 328 (521)
.+|++.+++......+.++..++..+.|||++||.++|++|+..|.+++...|+.+|+..|++++..+.......+++++
T Consensus 231 ~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~ 310 (495)
T TIGR01241 231 EEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAGPEKKSRVISEKE 310 (495)
T ss_pred HHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccccccccccHHH
Confidence 99999999988777788999999999999999999999999999999999999999999999999998777766788999
Q ss_pred HHHHHHHHhhhHHHhhhcCCCCCcceEEEeeCCCCCcceeecCCCccchhcHHHHHHHHHHHhhHHHHHHHHhCCCCCCc
Q 009974 329 KKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQLLARLDVCMGGRVAEELIFGRDHITT 408 (521)
Q Consensus 329 ~~~~a~heaghavv~~~~~~~~~v~~v~i~~r~~~~g~~~~~~~~~~~~~t~~~l~~~i~~~LaGraAE~~~~G~~~~~~ 408 (521)
++++|+||+||||++++++...++.+++|.||+..+||+.+.|.++....|+.+++++|+++|||||||+++||+ +|+
T Consensus 311 ~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAE~~~~G~--~s~ 388 (495)
T TIGR01241 311 KKLVAYHEAGHALVGLLLKDADPVHKVTIIPRGQALGYTQFLPEEDKYLYTKSQLLAQIAVLLGGRAAEEIIFGE--VTT 388 (495)
T ss_pred HHHHHHHHHhHHHHHHhcCCCCceEEEEEeecCCccceEEecCccccccCCHHHHHHHHHHHhhHHHHHHHHhcC--CCC
Confidence 999999999999999999888999999999999999999988887778889999999999999999999999994 789
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCCCCCccccCC---------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009974 409 GASSDLHSATELAHYMVSNCGMSDAIGPVHIKD---------------RPSSEMQSRIDAEVVKLLREAYDRVKALLKKH 473 (521)
Q Consensus 409 g~~~Dl~~At~la~~mv~~~Gm~~~~g~~~~~~---------------~~~~~~~~~id~ev~~~l~~~~~~a~~iL~~~ 473 (521)
|+++||++||++|+.||.+||||+.+|++.+.. ..++.+...+|.+|+++|+++|++|+++|++|
T Consensus 389 Ga~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~~l~~~~~~~~~~s~~~~~~id~~v~~lL~~a~~ra~~lL~~~ 468 (495)
T TIGR01241 389 GASNDIKQATNIARAMVTEWGMSDKLGPVAYGSDGGDVFLGRGFAKAKEYSEETAREIDEEVKRIIEEAYKRAKQILTEN 468 (495)
T ss_pred CchHHHHHHHHHHHHHHHHhCCCcccCceeeccCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999887643 24567888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCHHHHHHhhc
Q 009974 474 EKQLHALANALLEYETLSAEEIKRILL 500 (521)
Q Consensus 474 r~~l~~la~~Lle~e~l~~~ei~~il~ 500 (521)
|+++++||++|+++|+|+++||++|++
T Consensus 469 ~~~l~~la~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 469 RDELELLAKALLEKETITREEIKELLA 495 (495)
T ss_pred HHHHHHHHHHHHHcCeeCHHHHHHHhC
Confidence 999999999999999999999999974
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-55 Score=429.34 Aligned_cols=249 Identities=47% Similarity=0.732 Sum_probs=239.0
Q ss_pred CCCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009974 69 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 147 (521)
Q Consensus 69 ~~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 147 (521)
.+.|.++|+||.|+++.++++++.++. +++|+.|..+|..+|+|||||||||||||+||||+|++.++.|+.+.++++.
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 466788999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC----CcccHHHHHHHHHhhhcCccCCceEEEeecCCCCC
Q 009974 148 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 223 (521)
Q Consensus 148 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~----~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ 223 (521)
.+|.|++++.++++|..|+.++||||||||||+++.+|-.. +.+.++++.+||.+||||.+..+|-||+|||+++.
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~ 302 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI 302 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc
Confidence 99999999999999999999999999999999999887543 33568899999999999999999999999999999
Q ss_pred CCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 009974 224 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 303 (521)
Q Consensus 224 ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~ 303 (521)
|||||+||||||+.|+||+|+.+.|.+||+.|.++..+.+++|++.+|+.++|+||+||+++|.+|.+.|.++.+..||+
T Consensus 303 LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~ 382 (406)
T COG1222 303 LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTM 382 (406)
T ss_pred cChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCc
Q 009974 304 TELEFAKDRILMGT 317 (521)
Q Consensus 304 ~~~~~a~~~~~~~~ 317 (521)
+||..|+++++...
T Consensus 383 ~DF~~Av~KV~~~~ 396 (406)
T COG1222 383 EDFLKAVEKVVKKK 396 (406)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988643
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=1.9e-53 Score=480.92 Aligned_cols=307 Identities=21% Similarity=0.253 Sum_probs=260.5
Q ss_pred hhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhh--------------------------------
Q 009974 103 TRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF-------------------------------- 150 (521)
Q Consensus 103 ~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~-------------------------------- 150 (521)
.++|..+|+||||+||||||||++|+|+|.++++||+.++++++.+.+
T Consensus 1623 lrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~ 1702 (2281)
T CHL00206 1623 LRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELL 1702 (2281)
T ss_pred HHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhh
Confidence 467889999999999999999999999999999999999999987543
Q ss_pred ---------hhh--hhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc---cCCceEEEe
Q 009974 151 ---------VGV--GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---QNEGIILMA 216 (521)
Q Consensus 151 ---------~g~--~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~---~~~~vivI~ 216 (521)
.+. ...+++.+|+.|+..+||||||||||+++.+.. ...++++|+.+|++.. ...+|+|||
T Consensus 1703 e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds-----~~ltL~qLLneLDg~~~~~s~~~VIVIA 1777 (2281)
T CHL00206 1703 TMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES-----NYLSLGLLVNSLSRDCERCSTRNILVIA 1777 (2281)
T ss_pred hhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc-----ceehHHHHHHHhccccccCCCCCEEEEE
Confidence 122 234589999999999999999999999987521 2245889999999763 456899999
Q ss_pred ecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHh--ccCCCCC-cccHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 009974 217 ATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYL--QDKPLAD-DVDVKAIARGTPGFNGADLANLVNIAAIKA 293 (521)
Q Consensus 217 ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l--~~~~~~~-~~~l~~la~~~~g~s~~dl~~lv~~A~~~a 293 (521)
|||+|+.|||||+||||||+.|.++.|+..+|.+++...+ ++..+.. .+++..+|+.|.|||||||+++|++|+..|
T Consensus 1778 ATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliA 1857 (2281)
T CHL00206 1778 STHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSIS 1857 (2281)
T ss_pred eCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887543 3444443 357999999999999999999999999999
Q ss_pred HHhCCCccCHHHHHHHHHHHhcCccccccccchHHHHHHHHHHhhhHHHhhhcCCCCCcceEEEeeC------CCCCcce
Q 009974 294 AVDGGEKLTATELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPR------GSALGMV 367 (521)
Q Consensus 294 ~~~~~~~it~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~heaghavv~~~~~~~~~v~~v~i~~r------~~~~g~~ 367 (521)
+++++..|+.++++.|++++++|.+.+.. +..+. .+|+||+||||++..+....|++++||.++ +.+.||+
T Consensus 1858 irq~ks~Id~~~I~~Al~Rq~~g~~~~~~--~~~~~-~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~~~~yl~~ 1934 (2281)
T CHL00206 1858 ITQKKSIIDTNTIRSALHRQTWDLRSQVR--SVQDH-GILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGDSYLYK 1934 (2281)
T ss_pred HHcCCCccCHHHHHHHHHHHHhhhhhccc--Ccchh-hhhhhHHhHHHHHHhccCCCCcceEEEecCCccccCcccceeE
Confidence 99999999999999999999999765432 22222 479999999999999999999999999532 4567999
Q ss_pred eecCCCccchhcHHHHHHHHHHHhhHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHHHhcCCCCC
Q 009974 368 TQLPSSDETSVSQKQLLARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDA 433 (521)
Q Consensus 368 ~~~~~~~~~~~t~~~l~~~i~~~LaGraAE~~~~G~~~~~~g~~~Dl~~At~la~~mv~~~Gm~~~ 433 (521)
++.|.+ ..+++.+++.+|.+||||||||+++|+..+ .+..||+.|||.+.
T Consensus 1935 wyle~~--~~mkk~tiL~~Il~cLAGraAedlwf~~~~--------------~~~n~It~yg~vEn 1984 (2281)
T CHL00206 1935 WYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSLPGP--------------DEKNGITSYGLVEN 1984 (2281)
T ss_pred eecCCc--ccCCHHHHHHHHHHHhhhhhhhhhccCcch--------------hhhcCcccccchhh
Confidence 998866 788999999999999999999999997642 46667777777654
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-50 Score=414.02 Aligned_cols=246 Identities=43% Similarity=0.726 Sum_probs=234.2
Q ss_pred CCCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009974 69 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 147 (521)
Q Consensus 69 ~~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 147 (521)
.+.+.++|+||.|++++|++|++.+.+ +++|+.|.++|..+|+|||||||||||||++|+++|++++++|+++.+.++.
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 466778999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC-CcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCc
Q 009974 148 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDP 226 (521)
Q Consensus 148 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~-~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~ 226 (521)
++|+|++++.++++|++|++.+|||||+||||+++..|+.. .+...+++++||.+|||+....+|+|||+||+|+.||+
T Consensus 506 sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ 585 (693)
T KOG0730|consen 506 SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDP 585 (693)
T ss_pred HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCH
Confidence 99999999999999999999999999999999999988632 34578999999999999999999999999999999999
Q ss_pred cccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC--CCccCHH
Q 009974 227 ALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG--GEKLTAT 304 (521)
Q Consensus 227 al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~--~~~it~~ 304 (521)
|++||||||+.|+||+||.+.|.+||+.++++.++.+++|++.||+.|+||||+||.++|++|+..|.++. ...|+.+
T Consensus 586 ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~~ 665 (693)
T KOG0730|consen 586 ALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEITWQ 665 (693)
T ss_pred HHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999885 4689999
Q ss_pred HHHHHHHHHh
Q 009974 305 ELEFAKDRIL 314 (521)
Q Consensus 305 ~~~~a~~~~~ 314 (521)
||.+|+..+.
T Consensus 666 hf~~al~~~r 675 (693)
T KOG0730|consen 666 HFEEALKAVR 675 (693)
T ss_pred HHHHHHHhhc
Confidence 9999998653
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-47 Score=390.01 Aligned_cols=246 Identities=42% Similarity=0.660 Sum_probs=228.6
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
.-|.++|+||.++++++.+|...+.+ .++|+.|..+|...|.|||||||||||||++|+|+|++++.+|+.+.+.++.+
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 34678999999999999999997777 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCC-cccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCcc
Q 009974 149 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPA 227 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~-~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~a 227 (521)
+|+|+++..+|.+|..|+..+|||||+||+|+|.+.|+... ....+++|+||.+|||+..+.+|.||++||+|+.+|||
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpA 663 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPA 663 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchh
Confidence 99999999999999999999999999999999999987543 45689999999999999999999999999999999999
Q ss_pred ccCCCccceEEecCCCCHHHHHHHHHHHhc--cCCCCCcccHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHhC------
Q 009974 228 LTRPGRFDRHIVVPNPDVRGRQEILELYLQ--DKPLADDVDVKAIARGTP--GFNGADLANLVNIAAIKAAVDG------ 297 (521)
Q Consensus 228 l~r~gRf~~~i~~~~P~~~~r~~il~~~l~--~~~~~~~~~l~~la~~~~--g~s~~dl~~lv~~A~~~a~~~~------ 297 (521)
++||||||+.+++++|+.++|.+||+.+.+ +.++.+|+|++.||+.+. ||||+||..+|++|...|.++.
T Consensus 664 iLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~ 743 (802)
T KOG0733|consen 664 ILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDS 743 (802)
T ss_pred hcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999 778899999999998866 9999999999999999887652
Q ss_pred -CC---------ccCHHHHHHHHHHHhc
Q 009974 298 -GE---------KLTATELEFAKDRILM 315 (521)
Q Consensus 298 -~~---------~it~~~~~~a~~~~~~ 315 (521)
.. .+|..||++|+.++.+
T Consensus 744 ~~~~~~~~~~~~~~t~~hF~eA~~~i~p 771 (802)
T KOG0733|consen 744 SEDDVTVRSSTIIVTYKHFEEAFQRIRP 771 (802)
T ss_pred cCcccceeeeeeeecHHHHHHHHHhcCC
Confidence 11 2566799999998754
No 11
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=1.3e-44 Score=344.83 Aligned_cols=197 Identities=49% Similarity=0.699 Sum_probs=174.3
Q ss_pred CHHHHHHHHHHHhcCccccccccchHHHHHHHHHHhhhHHHhhhcCCCCCcceEEEeeCCCCCcceeecCCCccchhcHH
Q 009974 302 TATELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQK 381 (521)
Q Consensus 302 t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~heaghavv~~~~~~~~~v~~v~i~~r~~~~g~~~~~~~~~~~~~t~~ 381 (521)
|++||.+|+++++.|.+++....++++++++|+|||||||+++++++..+|.++||+||+.++||+.+.|.++....|+.
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~t~~ 80 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGSALGFTQFTPDEDRYIRTRS 80 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTTCCCCHCCEECHHTT-SS-BHH
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecCCCcceeEEeccchhcccccHH
Confidence 67899999999999998877788999999999999999999999998899999999999999999999998887779999
Q ss_pred HHHHHHHHHhhHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHHHhcCCCCCCCccccCC----------------CCCh
Q 009974 382 QLLARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD----------------RPSS 445 (521)
Q Consensus 382 ~l~~~i~~~LaGraAE~~~~G~~~~~~g~~~Dl~~At~la~~mv~~~Gm~~~~g~~~~~~----------------~~~~ 445 (521)
+++++|+++|||||||+++||.+++|+|+++||++||+||+.||.+||||+.+|++.+.. ..++
T Consensus 81 ~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~~s~ 160 (213)
T PF01434_consen 81 YLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDEVFLGREWNSRRPMSE 160 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-SSS-E---EEESS-H
T ss_pred HHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeeccccccccccccccccCCcch
Confidence 999999999999999999999888999999999999999999999999999999887532 2456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHh
Q 009974 446 EMQSRIDAEVVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRI 498 (521)
Q Consensus 446 ~~~~~id~ev~~~l~~~~~~a~~iL~~~r~~l~~la~~Lle~e~l~~~ei~~i 498 (521)
++...+|.+|+++|+++|++|+++|++||+.|++||++|+++++|+++||++|
T Consensus 161 ~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 161 ETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 77889999999999999999999999999999999999999999999999986
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-44 Score=369.85 Aligned_cols=227 Identities=42% Similarity=0.699 Sum_probs=214.7
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhh
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 149 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 149 (521)
....++|+||.|.++...+|.+++..+++|+.|..+|..||+|+||+||||||||+||+|+|+++++||+.+++.++.+.
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 33466899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcc-cHHHHHHHHHhhhcCccC----CceEEEeecCCCCCC
Q 009974 150 FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH-TKKTLHQLLVEMDGFEQN----EGIILMAATNLPDIL 224 (521)
Q Consensus 150 ~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~-~~~~l~~ll~~l~~~~~~----~~vivI~ttn~~~~l 224 (521)
+.|+++++++++|+.|+..+|||+||||||+++++|...+.+ .++++.+||..||++... .+|+||+|||+|+.|
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl 342 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL 342 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence 999999999999999999999999999999999999875444 367889999999987543 679999999999999
Q ss_pred CccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 009974 225 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 296 (521)
Q Consensus 225 d~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~ 296 (521)
|++|+|+||||+.|.+..|+..+|.+||+..+++..+..++|+..||..|+||.|+||..+|.+|+..|.++
T Consensus 343 DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 343 DPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred CHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876
No 13
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.2e-44 Score=335.34 Aligned_cols=237 Identities=40% Similarity=0.686 Sum_probs=223.9
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhh
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 151 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~ 151 (521)
+..+|+|++|++++|+..+-++.+|.+|++|..+ .|++||||||||||||++|+++|+++++|++.+.+.++.+.++
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV 192 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV 192 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence 4578999999999999999999999999998766 4899999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhcCCcEEEEccccccccCCc--CCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCcccc
Q 009974 152 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK--QWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALT 229 (521)
Q Consensus 152 g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~--~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~ 229 (521)
|.+.++++++|+.|++.+|||+||||+|+++-.|. ...+....++|.||.+||++..+.+|+.|++||+|+.||++++
T Consensus 193 Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiR 272 (368)
T COG1223 193 GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIR 272 (368)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHH
Confidence 99999999999999999999999999999987664 3346678999999999999999999999999999999999999
Q ss_pred CCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHH-HHHHHHHHHHHhCCCccCHHHHHH
Q 009974 230 RPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLAN-LVNIAAIKAAVDGGEKLTATELEF 308 (521)
Q Consensus 230 r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~-lv~~A~~~a~~~~~~~it~~~~~~ 308 (521)
+ ||...|+|.+|+.++|..|++.+++..++.-+.+++.++..+.|+||+||.. ++..|...|..++++.|+.+|++.
T Consensus 273 s--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~ 350 (368)
T COG1223 273 S--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEK 350 (368)
T ss_pred h--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHH
Confidence 8 9999999999999999999999999999999999999999999999999874 788899999999999999999999
Q ss_pred HHHHH
Q 009974 309 AKDRI 313 (521)
Q Consensus 309 a~~~~ 313 (521)
|+.+.
T Consensus 351 al~k~ 355 (368)
T COG1223 351 ALKKE 355 (368)
T ss_pred HHHhh
Confidence 99873
No 14
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-43 Score=328.75 Aligned_cols=246 Identities=38% Similarity=0.615 Sum_probs=232.7
Q ss_pred CCCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009974 69 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 147 (521)
Q Consensus 69 ~~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 147 (521)
.+++.+++.|+.|++-.|+++++.++. +.+.+.|.+.|.++|+|+|+|||||||||+|++++|+.....|+.+.+++|.
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 366888999999999999999999998 8889999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC----CcccHHHHHHHHHhhhcCccCCceEEEeecCCCCC
Q 009974 148 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 223 (521)
Q Consensus 148 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~----~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ 223 (521)
.+|.|++...++++|+.|+.++|+|+||||+|++..++-.. +.+.++++.+||++||||....+|-||.+||+.+.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt 306 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT 306 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc
Confidence 99999999999999999999999999999999998776321 23457888899999999999999999999999999
Q ss_pred CCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 009974 224 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 303 (521)
Q Consensus 224 ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~ 303 (521)
|||+++||||+|+.|+||+||..+++-++.....+.++.+++|++.+..+-+..|++||..+|++|.+.|.+.++-.|..
T Consensus 307 ldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~ 386 (408)
T KOG0727|consen 307 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQ 386 (408)
T ss_pred cCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 009974 304 TELEFAKDRIL 314 (521)
Q Consensus 304 ~~~~~a~~~~~ 314 (521)
.|++++....+
T Consensus 387 kd~e~ay~~~v 397 (408)
T KOG0727|consen 387 KDFEKAYKTVV 397 (408)
T ss_pred HHHHHHHHhhc
Confidence 99999988765
No 15
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-43 Score=329.51 Aligned_cols=251 Identities=39% Similarity=0.641 Sum_probs=236.8
Q ss_pred cCCCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009974 68 MPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 146 (521)
Q Consensus 68 ~~~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 146 (521)
+.+++.+++.|+.|+.+..+.|+++++. +.+|++|..+|..+|+|+|+|||||||||++|||+|++.+..|+.+-++++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 3467889999999999999999999998 899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcC----CCcccHHHHHHHHHhhhcCccCCceEEEeecCCCC
Q 009974 147 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQ----WEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 222 (521)
Q Consensus 147 ~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~----~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~ 222 (521)
..+|+|+++..++++|+.|+..+-||||+||||++++.+-. ++.+.+++..+++.++|+|..+.++-|+.+||+|+
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpd 327 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPD 327 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCC
Confidence 99999999999999999999999999999999999887632 23356788889999999999999999999999999
Q ss_pred CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccC
Q 009974 223 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 302 (521)
Q Consensus 223 ~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it 302 (521)
.|||+|+||||+|+.++|.+||.+.|..|++.|.+......++-++.+|+.++.-+|++|+.+|.+|.+.|.+..++..|
T Consensus 328 tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~at 407 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVAT 407 (435)
T ss_pred CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcc
Q 009974 303 ATELEFAKDRILMGTE 318 (521)
Q Consensus 303 ~~~~~~a~~~~~~~~~ 318 (521)
..||.+|+++++.|-.
T Consensus 408 ekdfl~av~kvvkgy~ 423 (435)
T KOG0729|consen 408 EKDFLDAVNKVVKGYA 423 (435)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887643
No 16
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-43 Score=323.67 Aligned_cols=247 Identities=38% Similarity=0.652 Sum_probs=234.4
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
.-|..+++=+.|.+...++++++++. .++|+.|..+|...|+|+|||||||||||++|+++|....+.|+.++++++..
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 34667899999999999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC----CcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCC
Q 009974 149 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 224 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~----~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~l 224 (521)
+|.|++...++++|-.|+.++|+|+|.||||++++.|... +.+.+++..+||+++|||....++-||.+||+.+.|
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridil 299 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 299 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccc
Confidence 9999999999999999999999999999999999887543 334578888999999999999999999999999999
Q ss_pred CccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 009974 225 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTAT 304 (521)
Q Consensus 225 d~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~ 304 (521)
||+++||||+|+.|+||+|+.+.|.+|++.|-++.++...+++..+|....|.||+++..+|.+|.+.|.++.+-.+|.+
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqe 379 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQE 379 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 009974 305 ELEFAKDRILMG 316 (521)
Q Consensus 305 ~~~~a~~~~~~~ 316 (521)
||+-|+.+++..
T Consensus 380 dfemav~kvm~k 391 (404)
T KOG0728|consen 380 DFEMAVAKVMQK 391 (404)
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
No 17
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-43 Score=325.82 Aligned_cols=248 Identities=39% Similarity=0.639 Sum_probs=233.5
Q ss_pred cCCCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009974 68 MPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 146 (521)
Q Consensus 68 ~~~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 146 (521)
+.++|..+++||.|++..+++|.+.+.. +.++++|..+|.++|+|+|+|||||||||++||+.|...+..|+.+.+..+
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence 3567778999999999999999986665 899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC----CcccHHHHHHHHHhhhcCccCCceEEEeecCCCC
Q 009974 147 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 222 (521)
Q Consensus 147 ~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~----~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~ 222 (521)
..+|.|.+++.+++.|..|+..+|+||||||+|+++.+|..+ +.+.+++..+||+++|||.++..|-||++||+.+
T Consensus 242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvD 321 (424)
T KOG0652|consen 242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVD 321 (424)
T ss_pred HhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccc
Confidence 999999999999999999999999999999999999887543 3345788889999999999999999999999999
Q ss_pred CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccC
Q 009974 223 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 302 (521)
Q Consensus 223 ~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it 302 (521)
.|||+++|+||+|+.|+||.|+.+.|..|++.|.++....+|++++++|+-|++|+|++...+|-+|.+.|.+++...|+
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~ 401 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVT 401 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 009974 303 ATELEFAKDRILM 315 (521)
Q Consensus 303 ~~~~~~a~~~~~~ 315 (521)
-+|+.+++..+..
T Consensus 402 heDfmegI~eVqa 414 (424)
T KOG0652|consen 402 HEDFMEGILEVQA 414 (424)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876643
No 18
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-43 Score=331.46 Aligned_cols=248 Identities=37% Similarity=0.633 Sum_probs=234.0
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
..|..+|.|+.|++...+++++.++. |.+|+.|..+|.++|+||+|||+||||||+||+|+|+.....|+.+-++++..
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 34556899999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCC----cccHHHHHHHHHhhhcCccCCceEEEeecCCCCCC
Q 009974 149 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 224 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~----~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~l 224 (521)
+|.|.+.+.++++|+-|..++|+|+||||||+++.+|-..+ .+.++++.+||+++|+|..+..|-||.+||+.+.|
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 99999999999999999999999999999999998874322 34577888999999999999999999999999999
Q ss_pred CccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 009974 225 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTAT 304 (521)
Q Consensus 225 d~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~ 304 (521)
||+|.||||+|+.|.|+.||...++.||..|.....+..+++++.+...-..+||+||..+|.+|.+.|.+..+..++.+
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~ 417 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTME 417 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHH
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCc
Q 009974 305 ELEFAKDRILMGT 317 (521)
Q Consensus 305 ~~~~a~~~~~~~~ 317 (521)
||..|..+++...
T Consensus 418 DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 418 DFKKAKEKVLYKK 430 (440)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988643
No 19
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-42 Score=339.15 Aligned_cols=247 Identities=34% Similarity=0.534 Sum_probs=220.8
Q ss_pred cccCCCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCc
Q 009974 66 EVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 144 (521)
Q Consensus 66 ~~~~~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~ 144 (521)
.+....+..+|+||+|++++|+-|++.|.. +..|+.|.. ..+|-+|||++||||||||+||+|+|.+++..|+.++.+
T Consensus 201 dIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSss 279 (491)
T KOG0738|consen 201 DILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSS 279 (491)
T ss_pred HHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechh
Confidence 334466778999999999999999997776 888888874 245558999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCc--ccHHHHHHHHHhhhcCccC----CceEEEeec
Q 009974 145 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG--HTKKTLHQLLVEMDGFEQN----EGIILMAAT 218 (521)
Q Consensus 145 ~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~--~~~~~l~~ll~~l~~~~~~----~~vivI~tt 218 (521)
.+.++|.|++++.++-+|+.|+.++|++|||||||+|++.|+..+. .+.++-++||.+|||+... .-|+|+++|
T Consensus 280 tltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAAT 359 (491)
T KOG0738|consen 280 TLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT 359 (491)
T ss_pred hhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEecc
Confidence 9999999999999999999999999999999999999999876543 4578889999999998542 338999999
Q ss_pred CCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC-
Q 009974 219 NLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG- 297 (521)
Q Consensus 219 n~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~- 297 (521)
|.||+||+|++| ||.++|+||+|+.+.|..+++..++.....++++++.++..++||||+||.++|++|.+.+.++.
T Consensus 360 N~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i 437 (491)
T KOG0738|consen 360 NFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKI 437 (491)
T ss_pred CCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999999999999999999999999999999999999999999988752
Q ss_pred ----------------CCccCHHHHHHHHHHHhc
Q 009974 298 ----------------GEKLTATELEFAKDRILM 315 (521)
Q Consensus 298 ----------------~~~it~~~~~~a~~~~~~ 315 (521)
...++..||+.|+.++.+
T Consensus 438 ~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~p 471 (491)
T KOG0738|consen 438 AGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRP 471 (491)
T ss_pred hcCCcHHhhhhhhhccccccchhhHHHHHHHcCc
Confidence 124778888888887643
No 20
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-42 Score=360.44 Aligned_cols=246 Identities=37% Similarity=0.634 Sum_probs=223.6
Q ss_pred CCCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009974 69 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 147 (521)
Q Consensus 69 ~~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 147 (521)
|+-|.++|+||.|.+++|.++.+-+.. |++|+.|.. |.+...|||||||||||||++|+|+|.++...|+.+.+.++.
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 677889999999999999999999987 899988764 666667999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC---CcccHHHHHHHHHhhhcCc--cCCceEEEeecCCCC
Q 009974 148 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW---EGHTKKTLHQLLVEMDGFE--QNEGIILMAATNLPD 222 (521)
Q Consensus 148 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~---~~~~~~~l~~ll~~l~~~~--~~~~vivI~ttn~~~ 222 (521)
++|+|++++++|++|++|+..+|||||+||+|+++++|+.. .+-.++++.|||.+||++. ....|+||+|||+|+
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD 822 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD 822 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc
Confidence 99999999999999999999999999999999999998754 3456899999999999997 467899999999999
Q ss_pred CCCccccCCCccceEEecCCC-CHHHHHHHHHHHhccCCCCCcccHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHhCC--
Q 009974 223 ILDPALTRPGRFDRHIVVPNP-DVRGRQEILELYLQDKPLADDVDVKAIARGTP-GFNGADLANLVNIAAIKAAVDGG-- 298 (521)
Q Consensus 223 ~ld~al~r~gRf~~~i~~~~P-~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~-g~s~~dl~~lv~~A~~~a~~~~~-- 298 (521)
.|||+|+||||||+-+++.++ |.+.+..+|+...++..++.++|+.++|+.++ .|||+|+..+|.+|.+.|.++.-
T Consensus 823 LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ 902 (953)
T KOG0736|consen 823 LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHD 902 (953)
T ss_pred ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 56677889999999999999999999999985 68999999999999999987621
Q ss_pred ---------------CccCHHHHHHHHHHHhc
Q 009974 299 ---------------EKLTATELEFAKDRILM 315 (521)
Q Consensus 299 ---------------~~it~~~~~~a~~~~~~ 315 (521)
-.|+++|+.++.++..+
T Consensus 903 ie~g~~~~~e~~~~~v~V~~eDflks~~~l~P 934 (953)
T KOG0736|consen 903 IESGTISEEEQESSSVRVTMEDFLKSAKRLQP 934 (953)
T ss_pred hhhccccccccCCceEEEEHHHHHHHHHhcCC
Confidence 14789999999987644
No 21
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=5.1e-41 Score=346.96 Aligned_cols=248 Identities=37% Similarity=0.604 Sum_probs=230.9
Q ss_pred CCCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009974 69 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 147 (521)
Q Consensus 69 ~~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 147 (521)
.+.+..+|+||+|.+.+|+++++.+.. +.+++.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 456778999999999999999999986 8899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC----CcccHHHHHHHHHhhhcCccCCceEEEeecCCCCC
Q 009974 148 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 223 (521)
Q Consensus 148 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~----~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ 223 (521)
..|.|.+...++.+|..|+..+||||||||+|.++.++... +...++.+.+++..++++....+++||+|||+++.
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 99999999999999999999999999999999998766322 12345678899999999888889999999999999
Q ss_pred CCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 009974 224 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 303 (521)
Q Consensus 224 ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~ 303 (521)
+|++++||||||+.|+|++|+.++|..||+.++.+.++..++++..++..++||||+||.++|++|...|.++++..|+.
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~ 376 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILP 376 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCH
Confidence 99999999999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 009974 304 TELEFAKDRILMG 316 (521)
Q Consensus 304 ~~~~~a~~~~~~~ 316 (521)
+|+..|+.++..+
T Consensus 377 ~df~~A~~~v~~~ 389 (398)
T PTZ00454 377 KDFEKGYKTVVRK 389 (398)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998654
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.5e-39 Score=337.61 Aligned_cols=249 Identities=46% Similarity=0.695 Sum_probs=230.2
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
+.+..+|+||+|.+++++++.+.+.. +.+++.|..+|..+|+++|||||||||||++|+++|++++.+|+.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 45678999999999999999998877 88999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCC----cccHHHHHHHHHhhhcCccCCceEEEeecCCCCCC
Q 009974 149 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 224 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~----~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~l 224 (521)
.|.|.+.+.++.+|..++...||||||||+|.++..+.... ...++.+.+++..++++....+++||+|||+++.+
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~l 283 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDIL 283 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhC
Confidence 99999999999999999999999999999999987665322 23356778888889988878899999999999999
Q ss_pred CccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 009974 225 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTAT 304 (521)
Q Consensus 225 d~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~ 304 (521)
|++++|||||++.++|++|+.++|.+||+.+++...+..++++..++..+.|||++||+++|++|...|.+++...|+.+
T Consensus 284 d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~ 363 (389)
T PRK03992 284 DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTME 363 (389)
T ss_pred CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHH
Confidence 99999999999999999999999999999999988888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcc
Q 009974 305 ELEFAKDRILMGTE 318 (521)
Q Consensus 305 ~~~~a~~~~~~~~~ 318 (521)
||.+|++++.....
T Consensus 364 d~~~A~~~~~~~~~ 377 (389)
T PRK03992 364 DFLKAIEKVMGKEE 377 (389)
T ss_pred HHHHHHHHHhcccc
Confidence 99999999876543
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2.7e-39 Score=335.97 Aligned_cols=247 Identities=38% Similarity=0.658 Sum_probs=228.9
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
+.+..+|+||.|+++.++++.+.+.. +.+++.|..+|..+|+++|||||||||||++|+++|++++.+|+.++++++..
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 44568999999999999999999986 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC----CcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCC
Q 009974 149 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 224 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~----~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~l 224 (521)
.|.|.+...++.+|..|..+.||||||||+|.++.++... .....+++.+++..++++....++.||+|||+++.+
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 9999999999999999999999999999999998766432 123356778899999998878889999999999999
Q ss_pred CccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 009974 225 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTAT 304 (521)
Q Consensus 225 d~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~ 304 (521)
|++++|||||++.|+|++|+.++|.+||+.++.+..+..++++..++..+.|+|++||.++|++|...|.++++..|+.+
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~ 415 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQA 415 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHH
Confidence 99999999999999999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 009974 305 ELEFAKDRILMG 316 (521)
Q Consensus 305 ~~~~a~~~~~~~ 316 (521)
|+..|+++++..
T Consensus 416 D~~~A~~~v~~~ 427 (438)
T PTZ00361 416 DFRKAKEKVLYR 427 (438)
T ss_pred HHHHHHHHHHhh
Confidence 999999998653
No 24
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-40 Score=314.51 Aligned_cols=231 Identities=38% Similarity=0.642 Sum_probs=206.0
Q ss_pred ccccccCCCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 63 LNKEVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 63 ~~~~~~~~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
++..+..++|.+.|+||+|.+.+|+.|++.+.. ++.|..|.. +..+-+|+||||||||||++||+|+|.+++..|+.+
T Consensus 119 L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSv 197 (439)
T KOG0739|consen 119 LNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSV 197 (439)
T ss_pred hhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEe
Confidence 344556688999999999999999999997765 788887763 334558999999999999999999999999999999
Q ss_pred eCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCc-ccHHHHHHHHHhhhcCc-cCCceEEEeecC
Q 009974 142 AGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG-HTKKTLHQLLVEMDGFE-QNEGIILMAATN 219 (521)
Q Consensus 142 ~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~-~~~~~l~~ll~~l~~~~-~~~~vivI~ttn 219 (521)
+.+++.++|.|++++.++.+|+.|+.++|+||||||||.+++.++.... ..+++-.+||.+|.|+. .+.+|+|+++||
T Consensus 198 SSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATN 277 (439)
T KOG0739|consen 198 SSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATN 277 (439)
T ss_pred ehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCC
Confidence 9999999999999999999999999999999999999999998876554 45667778999999984 467899999999
Q ss_pred CCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 009974 220 LPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 296 (521)
Q Consensus 220 ~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~ 296 (521)
-||.||.+++| ||+++|++|+|+...|..+++.|+...+.. .+.|+..++++|+||||+||.-+|+.|.+.-.+.
T Consensus 278 iPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 278 IPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred CchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 99999999999 999999999999999999999999876543 5678999999999999999999999988766543
No 25
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-39 Score=334.32 Aligned_cols=223 Identities=40% Similarity=0.670 Sum_probs=213.8
Q ss_pred CCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhh
Q 009974 74 KTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVG 152 (521)
Q Consensus 74 ~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g 152 (521)
..|+||.|..++|+.|.+++.+ -+.|..|...+.+.+.|||||||||||||++|.++|..++..|+.+.+.++.++|.|
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG 743 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence 6899999999999999999998 788999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC-CcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCC
Q 009974 153 VGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRP 231 (521)
Q Consensus 153 ~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~-~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~ 231 (521)
.+++.+|.+|.+|+..+|||||+||+|+++++|+.. .+-.++++|++|.+|||...-.+|.|+++|.+|+.|||||+||
T Consensus 744 aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRp 823 (952)
T KOG0735|consen 744 ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRP 823 (952)
T ss_pred ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCC
Confidence 999999999999999999999999999999998754 4677999999999999999999999999999999999999999
Q ss_pred CccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 009974 232 GRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 296 (521)
Q Consensus 232 gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~ 296 (521)
||+|+.++.+.|+..+|.+|++.......+..++|++.+|..|+||||+||..++..|.+.|..+
T Consensus 824 GRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 824 GRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred CccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999889999999999999999999999999999999887654
No 26
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-38 Score=341.36 Aligned_cols=245 Identities=48% Similarity=0.727 Sum_probs=229.8
Q ss_pred CCCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009974 69 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 147 (521)
Q Consensus 69 ~~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 147 (521)
...+..+|+|+.|.+.+|+.+++.+.+ ++.++.|...+.++|+++|||||||||||++|+++|.+++.+|+.+..+++.
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~ 313 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL 313 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHh
Confidence 456778999999999999999999998 7888889988999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCccc-HHHHHHHHHhhhcCccCCceEEEeecCCCCCCCc
Q 009974 148 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHT-KKTLHQLLVEMDGFEQNEGIILMAATNLPDILDP 226 (521)
Q Consensus 148 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~-~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~ 226 (521)
++|+|++++.++.+|..|+..+||||||||+|++.+.++...... .+++++++.+|++.....+|+||+|||+|+.+|+
T Consensus 314 sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~ 393 (494)
T COG0464 314 SKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDP 393 (494)
T ss_pred ccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCH
Confidence 999999999999999999999999999999999999887654433 6899999999999999999999999999999999
Q ss_pred cccCCCccceEEecCCCCHHHHHHHHHHHhccCC--CCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC-CCccCH
Q 009974 227 ALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP--LADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG-GEKLTA 303 (521)
Q Consensus 227 al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~--~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~-~~~it~ 303 (521)
+++||||||+.++|++||.++|.+|++.++.... +..++++..+++.++|||++||..+|++|...+.++. ...+|.
T Consensus 394 a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~ 473 (494)
T COG0464 394 ALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREVTL 473 (494)
T ss_pred hhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCccH
Confidence 9999999999999999999999999999998544 3578999999999999999999999999999999998 789999
Q ss_pred HHHHHHHHHH
Q 009974 304 TELEFAKDRI 313 (521)
Q Consensus 304 ~~~~~a~~~~ 313 (521)
+|+..|+.++
T Consensus 474 ~~~~~a~~~~ 483 (494)
T COG0464 474 DDFLDALKKI 483 (494)
T ss_pred HHHHHHHHhc
Confidence 9999999874
No 27
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=6.2e-38 Score=330.43 Aligned_cols=239 Identities=26% Similarity=0.410 Sum_probs=210.7
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhh
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 151 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~ 151 (521)
+..+|+||.|++.+|+++.+....+ +..+...|.++|+|+|||||||||||++|+++|++++.|++.++++.+.+.|+
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 4568999999999999999866543 23445678899999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcC--CCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCcccc
Q 009974 152 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQ--WEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALT 229 (521)
Q Consensus 152 g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~--~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~ 229 (521)
|.++.+++.+|..|+..+||||||||||.++..+.. ..+...++++.++..|+. .+.+|+||+|||+++.||++++
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~all 378 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEIL 378 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHHHh
Confidence 999999999999999999999999999998765332 234456788888888874 4567999999999999999999
Q ss_pred CCCccceEEecCCCCHHHHHHHHHHHhccCCCC--CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 009974 230 RPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA--DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 307 (521)
Q Consensus 230 r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~--~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~ 307 (521)
|+||||+.++++.|+.++|.+||+.|+++.... .+.++..++..|.||||+||+++|++|...|..++ +.++.+|+.
T Consensus 379 R~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~dl~ 457 (489)
T CHL00195 379 RKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTTDDIL 457 (489)
T ss_pred CCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCHHHHH
Confidence 999999999999999999999999999875432 47889999999999999999999999998887665 679999999
Q ss_pred HHHHHHhc
Q 009974 308 FAKDRILM 315 (521)
Q Consensus 308 ~a~~~~~~ 315 (521)
.|+.++.+
T Consensus 458 ~a~~~~~P 465 (489)
T CHL00195 458 LALKQFIP 465 (489)
T ss_pred HHHHhcCC
Confidence 99988764
No 28
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=5.8e-38 Score=351.11 Aligned_cols=245 Identities=43% Similarity=0.696 Sum_probs=226.1
Q ss_pred CCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhh
Q 009974 71 KNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 149 (521)
Q Consensus 71 ~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 149 (521)
.+..+|+||+|++++|++|++.+.+ +++++.|..+|.++|+|+|||||||||||++|+++|++++.+|+.++++++.+.
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 4567999999999999999999987 889999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCC--cccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCcc
Q 009974 150 FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE--GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPA 227 (521)
Q Consensus 150 ~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~--~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~a 227 (521)
|+|++++.++.+|..|+...||||||||+|.+++.++... ...++.+++|+.+|+++....+++||+|||+|+.||++
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~a 606 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPA 606 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHh
Confidence 9999999999999999999999999999999988775432 23467899999999999888899999999999999999
Q ss_pred ccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC----------
Q 009974 228 LTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG---------- 297 (521)
Q Consensus 228 l~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~---------- 297 (521)
++|||||++.+++++|+.++|.+||+.+.++.++..++++..+|..+.||||+||.++|++|...|.++.
T Consensus 607 llRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~ 686 (733)
T TIGR01243 607 LLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLE 686 (733)
T ss_pred hcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhh
Confidence 9999999999999999999999999999999888889999999999999999999999999999887742
Q ss_pred --------CCccCHHHHHHHHHHHhc
Q 009974 298 --------GEKLTATELEFAKDRILM 315 (521)
Q Consensus 298 --------~~~it~~~~~~a~~~~~~ 315 (521)
...|+.+||..|+.++.+
T Consensus 687 ~~~~~~~~~~~i~~~~f~~al~~~~p 712 (733)
T TIGR01243 687 VGEEEFLKDLKVEMRHFLEALKKVKP 712 (733)
T ss_pred cccccccccCcccHHHHHHHHHHcCC
Confidence 126899999999987643
No 29
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-38 Score=310.43 Aligned_cols=230 Identities=37% Similarity=0.586 Sum_probs=207.6
Q ss_pred ccccCCCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009974 65 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLG-GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 142 (521)
Q Consensus 65 ~~~~~~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g-~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~ 142 (521)
..+.|....++|+||.|.++++++|++.+.. ++.|+.|..-+ .++|+|||||||||||||++|+++|++++.+|+.++
T Consensus 80 ~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~ 159 (386)
T KOG0737|consen 80 DVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVS 159 (386)
T ss_pred cccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceee
Confidence 3455777888999999999999999998877 89999885322 368899999999999999999999999999999999
Q ss_pred CchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCC-cccHHHHHHHHHhhhcCccCCc--eEEEeecC
Q 009974 143 GSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFEQNEG--IILMAATN 219 (521)
Q Consensus 143 ~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~-~~~~~~l~~ll~~l~~~~~~~~--vivI~ttn 219 (521)
.+.+.++|.|++.+.++.+|..|.+-+||||||||+|.+.+.|+..+ ......-+++....||+..+.+ |+|+||||
T Consensus 160 ~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 160 VSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred ccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 99999999999999999999999999999999999999988874332 2345566789999999876554 99999999
Q ss_pred CCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 009974 220 LPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 296 (521)
Q Consensus 220 ~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~ 296 (521)
+|.++|.+++| |+.++++++.|+..+|.+|++.+++...+.+++|+..+|+.|.||||+||.++|+.|+...+++
T Consensus 240 RP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 240 RPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred CCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999877654
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.2e-36 Score=314.62 Aligned_cols=244 Identities=46% Similarity=0.724 Sum_probs=224.4
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
+.+..+|+||.|.+++++++.+.+.. +.+++.|...|..+|+|+|||||||||||++|+++|++++.+|+.+.++++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 55678999999999999999998876 78899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCC----cccHHHHHHHHHhhhcCccCCceEEEeecCCCCCC
Q 009974 149 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 224 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~----~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~l 224 (521)
.+.|.....++.+|..++...|+||||||+|.++..+.... ...+..+.+++..++++....++.||+|||+++.+
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~l 274 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDIL 274 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhC
Confidence 99999999999999999999999999999999987654321 23356778888889888777889999999999999
Q ss_pred CccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 009974 225 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTAT 304 (521)
Q Consensus 225 d~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~ 304 (521)
|++++|||||++.++|+.|+.++|.+|++.++....+..++++..++..+.|||++||.++|++|...|.++++..|+.+
T Consensus 275 d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~ 354 (364)
T TIGR01242 275 DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMD 354 (364)
T ss_pred ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Confidence 99999999999999999999999999999999888887788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 009974 305 ELEFAKDRI 313 (521)
Q Consensus 305 ~~~~a~~~~ 313 (521)
|+..|++++
T Consensus 355 d~~~a~~~~ 363 (364)
T TIGR01242 355 DFIKAVEKV 363 (364)
T ss_pred HHHHHHHHh
Confidence 999999875
No 31
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-37 Score=292.88 Aligned_cols=242 Identities=40% Similarity=0.632 Sum_probs=225.1
Q ss_pred cCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhh
Q 009974 73 VKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 151 (521)
Q Consensus 73 ~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~ 151 (521)
..+|+++.|.-+...++++.+.. +.+|..|.+.|.++|++++||||||||||++|+++|..+++.|+.++.+.+.+.|.
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi 207 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI 207 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence 45899999999999999998887 89999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCC----cccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCcc
Q 009974 152 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPA 227 (521)
Q Consensus 152 g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~----~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~a 227 (521)
|++.+.+++.|..|+...|||||+||||+.++.+.... ...+.++-.|+.+|+++....+|-+|+|||+|+.|||+
T Consensus 208 GEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpa 287 (388)
T KOG0651|consen 208 GESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPA 287 (388)
T ss_pred ccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchh
Confidence 99999999999999999999999999999988774322 23467788899999999999999999999999999999
Q ss_pred ccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 009974 228 LTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 307 (521)
Q Consensus 228 l~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~ 307 (521)
|+||||+|+.+++|+|+...|..|++.|.........++.+.+.+..+||+++|+++.|++|-..|.+..+..+-.+++.
T Consensus 288 LlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~~ 367 (388)
T KOG0651|consen 288 LLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHEDFM 367 (388)
T ss_pred hcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHhHHHHH
Confidence 99999999999999999999999999998887777788899999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 009974 308 FAKDRIL 314 (521)
Q Consensus 308 ~a~~~~~ 314 (521)
.++.++.
T Consensus 368 k~vrk~~ 374 (388)
T KOG0651|consen 368 KLVRKQA 374 (388)
T ss_pred HHHHHHH
Confidence 8887653
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=4.9e-35 Score=307.90 Aligned_cols=262 Identities=33% Similarity=0.513 Sum_probs=212.5
Q ss_pred ccCCCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC--------
Q 009974 67 VMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------- 137 (521)
Q Consensus 67 ~~~~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~-------- 137 (521)
+..+.+..+|+||.|+++.++++++.+.. +.+++.|...|.++|+|+|||||||||||++|+++|++++.+
T Consensus 172 ~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~ 251 (512)
T TIGR03689 172 VLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDK 251 (512)
T ss_pred eeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCc
Confidence 33455778999999999999999998876 889999999999999999999999999999999999998654
Q ss_pred --EEEEeCchhhhhhhhhhhHHHHHHHHHHHhc----CCcEEEEccccccccCCcCC--CcccHHHHHHHHHhhhcCccC
Q 009974 138 --FFYRAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQW--EGHTKKTLHQLLVEMDGFEQN 209 (521)
Q Consensus 138 --~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~----~p~Il~IDEiD~l~~~~~~~--~~~~~~~l~~ll~~l~~~~~~ 209 (521)
|+.++.+++...|.|+.++.++.+|..++.. .||||||||+|.++.+++.. +......+++|+..|+++...
T Consensus 252 ~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 252 SYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred eeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 5667778888899999999999999998763 69999999999998776542 122356789999999999888
Q ss_pred CceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccC-CCC---------CcccHHHHHh-------
Q 009974 210 EGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK-PLA---------DDVDVKAIAR------- 272 (521)
Q Consensus 210 ~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~-~~~---------~~~~l~~la~------- 272 (521)
.+++||+|||+++.||++++||||||++|+|++|+.++|.+||+.|+... ++. ...++..+++
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999998652 221 1111222211
Q ss_pred ----------------------cCCCCCHHHHHHHHHHHHHHHHHh----CCCccCHHHHHHHHHHHhcCccccccccch
Q 009974 273 ----------------------GTPGFNGADLANLVNIAAIKAAVD----GGEKLTATELEFAKDRILMGTERKTMFISE 326 (521)
Q Consensus 273 ----------------------~~~g~s~~dl~~lv~~A~~~a~~~----~~~~it~~~~~~a~~~~~~~~~~~~~~~~~ 326 (521)
..+.+||++|+++|.+|...|..+ +...|+.+|+..|+..-....+.-.....+
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~~~~~~~~ 491 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESEDLPNTTNP 491 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccccCCCCCCH
Confidence 245678999999999999888765 456899999999988766544333323334
Q ss_pred HH
Q 009974 327 ES 328 (521)
Q Consensus 327 ~~ 328 (521)
++
T Consensus 492 ~~ 493 (512)
T TIGR03689 492 DD 493 (512)
T ss_pred HH
Confidence 43
No 33
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=1.4e-32 Score=272.46 Aligned_cols=261 Identities=18% Similarity=0.205 Sum_probs=193.4
Q ss_pred CcCCcccc-cCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhh
Q 009974 72 NVKTFKDV-KGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 150 (521)
Q Consensus 72 ~~~~f~di-~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 150 (521)
...+|+++ .|+--.+.-+.+++..+... .....|.++|++++||||||||||++|+++|++++++++.++++++.+.|
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn-~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKN-FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhh-hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 34578888 56665565665555432211 11235789999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHh-----cCCcEEEEccccccccCCcCCCcc-cHHHH-HHHHHhhhcC------------ccCCc
Q 009974 151 VGVGARRVRSLFQAAKK-----KAPCIIFIDEIDAVGSTRKQWEGH-TKKTL-HQLLVEMDGF------------EQNEG 211 (521)
Q Consensus 151 ~g~~~~~i~~~f~~a~~-----~~p~Il~IDEiD~l~~~~~~~~~~-~~~~l-~~ll~~l~~~------------~~~~~ 211 (521)
.|++++.++++|..|+. ++||||||||||++++.++..... ..+.+ .+|+.++|+. ....+
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~ 268 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPR 268 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCC
Confidence 99999999999999975 579999999999999887643322 23444 6888888753 34567
Q ss_pred eEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCC----CCHHHHHHHHH
Q 009974 212 IILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPG----FNGADLANLVN 287 (521)
Q Consensus 212 vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g----~s~~dl~~lv~ 287 (521)
|+||+|||+|+.||++|+||||||+.+ ..|+.++|.+|++.+++...+. ..++..++..++| |+|+--..+..
T Consensus 269 V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd 345 (413)
T PLN00020 269 VPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYD 345 (413)
T ss_pred ceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHH
Confidence 999999999999999999999999975 5899999999999999988775 6789999998887 44554445555
Q ss_pred HHHHHHHHhCCCccCHHHHHHHHHHHhcCccccccccchHHHHHHHHHHhhhHHHhh
Q 009974 288 IAAIKAAVDGGEKLTATELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAF 344 (521)
Q Consensus 288 ~A~~~a~~~~~~~it~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~heaghavv~~ 344 (521)
++...-+.+- ..+.+ -++.+...+. ...........-.+-|+||.++..
T Consensus 346 ~~v~~~i~~~----g~~~~---~~~l~~~~~~-~p~f~~~~~t~~~l~~~g~~l~~e 394 (413)
T PLN00020 346 DEVRKWIAEV----GVENL---GKKLVNSKKG-PPTFEPPKMTLEKLLEYGNMLVRE 394 (413)
T ss_pred HHHHHHHHHh----hHHHH---HHHHhcCCCC-CCCCCCCCCCHHHHHHHHHHHHHH
Confidence 4443332221 22222 2233332222 223333344567888999999875
No 34
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-33 Score=290.21 Aligned_cols=239 Identities=38% Similarity=0.577 Sum_probs=223.7
Q ss_pred CcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhh
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 150 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 150 (521)
+..+ .++.|.......+++.+.+ +.++..|...|.++|+++|+|||||||||.+++++|++.++.++.++++++...+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 4455 7999999999999999988 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhcC-CcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCcccc
Q 009974 151 VGVGARRVRSLFQAAKKKA-PCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALT 229 (521)
Q Consensus 151 ~g~~~~~i~~~f~~a~~~~-p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~ 229 (521)
.|++++.++..|+.|...+ |+++||||+|.+++++........++..+++..|++.....+++|+++||+|+.||++++
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alR 338 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALR 338 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhh
Confidence 9999999999999999999 999999999999998876555567888999999999998899999999999999999999
Q ss_pred CCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 009974 230 RPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFA 309 (521)
Q Consensus 230 r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a 309 (521)
| ||||+.+.+..|+..+|.+|++.+.+..+..++.++..+|..+.||.|+|+..+|++|...+.++ +.+++..|
T Consensus 339 R-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~~~~A 412 (693)
T KOG0730|consen 339 R-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEIFQEA 412 (693)
T ss_pred c-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHHHHHH
Confidence 9 99999999999999999999999999999888899999999999999999999999999998877 88889888
Q ss_pred HHHHhcCc
Q 009974 310 KDRILMGT 317 (521)
Q Consensus 310 ~~~~~~~~ 317 (521)
...+.+..
T Consensus 413 ~~~i~psa 420 (693)
T KOG0730|consen 413 LMGIRPSA 420 (693)
T ss_pred HhcCCchh
Confidence 87766543
No 35
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-32 Score=298.54 Aligned_cols=250 Identities=35% Similarity=0.555 Sum_probs=221.3
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeC
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAG 143 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~-----~~~~~~i~~ 143 (521)
.+..++|++|.|.+.++++|+++|.. +.+|+.|..++..+|+|+|++||||||||+.|+++|..+ .+.|+.-.+
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 44567999999999999999998887 899999999999999999999999999999999999987 467888899
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCC-cccHHHHHHHHHhhhcCccCCceEEEeecCCCC
Q 009974 144 SEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 222 (521)
Q Consensus 144 ~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~-~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~ 222 (521)
++..++|+|+.+..++.+|+.|+...|+|+|+||||.|.+.++... .....+...||..|+|+..++.|+||+|||+|+
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpd 417 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPD 417 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcc
Confidence 9999999999999999999999999999999999999999885543 345677888999999999999999999999999
Q ss_pred CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC---
Q 009974 223 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGG--- 298 (521)
Q Consensus 223 ~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~--- 298 (521)
.+|++++||||||+.++|++|+.+.|.+|+..+-.+.... ...-+..+|..+.||-|+||+.+|.+|++.+.++.-
T Consensus 418 a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~ 497 (1080)
T KOG0732|consen 418 AIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQI 497 (1080)
T ss_pred ccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCee
Confidence 9999999999999999999999999999999998776532 233367899999999999999999999999887642
Q ss_pred -------------CccCHHHHHHHHHHHhcCccc
Q 009974 299 -------------EKLTATELEFAKDRILMGTER 319 (521)
Q Consensus 299 -------------~~it~~~~~~a~~~~~~~~~~ 319 (521)
..+..+|+-.|..++.+...+
T Consensus 498 y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 498 YSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred ecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 236677888888877665433
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.98 E-value=1.8e-31 Score=298.92 Aligned_cols=245 Identities=45% Similarity=0.690 Sum_probs=221.4
Q ss_pred CcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhh
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 150 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 150 (521)
+..+|+||+|.+++++.+++++.. +.+++.|..+|..+|+++|||||||||||++++++|++++.+++.++++++...+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 557999999999999999999887 8899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCc-ccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCcccc
Q 009974 151 VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG-HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALT 229 (521)
Q Consensus 151 ~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~-~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~ 229 (521)
.|...+.++.+|..+....|+||||||+|.+.+.++...+ .....+++|+..++++..+..++||++||+++.+|++++
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~ 332 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALR 332 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHh
Confidence 9999999999999999999999999999999887654332 235678899999999888889999999999999999999
Q ss_pred CCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC------------
Q 009974 230 RPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG------------ 297 (521)
Q Consensus 230 r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~------------ 297 (521)
|+|||++.+.++.|+.++|.+||+.+.+...+..+.++..++..+.||+++|+..+++.|+..+.++.
T Consensus 333 r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~ 412 (733)
T TIGR01243 333 RPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEE 412 (733)
T ss_pred CchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 99999999999999999999999999988888788899999999999999999999999998876542
Q ss_pred -------CCccCHHHHHHHHHHHhcC
Q 009974 298 -------GEKLTATELEFAKDRILMG 316 (521)
Q Consensus 298 -------~~~it~~~~~~a~~~~~~~ 316 (521)
...++.+|+..|+..+.+.
T Consensus 413 i~~~~~~~~~v~~~df~~Al~~v~ps 438 (733)
T TIGR01243 413 IPAEVLKELKVTMKDFMEALKMVEPS 438 (733)
T ss_pred ccchhcccccccHHHHHHHHhhcccc
Confidence 1247788999988876544
No 37
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.2e-32 Score=273.28 Aligned_cols=242 Identities=35% Similarity=0.548 Sum_probs=205.5
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
....+.|+|+.|.+.+|+.+.+.+.+ +.+++.|..+ ..+++++||.||||||||++++|+|.|++..|+.++++.+.+
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 34557899999999999999999988 5668887754 356689999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCC-cccHHHHHHHHHhhhcCc--cCCceEEEeecCCCCCCC
Q 009974 149 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFE--QNEGIILMAATNLPDILD 225 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~-~~~~~~l~~ll~~l~~~~--~~~~vivI~ttn~~~~ld 225 (521)
+|+|++++.++.+|.-|+..+|+|+||||+|.+...+.... ....+...+++..+++.. ..++|+||+|||+|+.+|
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 99999999999999999999999999999999998885433 344577778887777653 356899999999999999
Q ss_pred ccccCCCccceEEecCCCCHHHHHHHHHHHhccC-CCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC------
Q 009974 226 PALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK-PLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGG------ 298 (521)
Q Consensus 226 ~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~-~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~------ 298 (521)
.+++| ||.+++++|+|+.+.|..+|+.++.+. ....+.++..+++.|+|||+.||.++|.+|++.-.+...
T Consensus 305 ea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~ 382 (428)
T KOG0740|consen 305 EAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLE 382 (428)
T ss_pred HHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhh
Confidence 99999 999999999999999999999999876 333567899999999999999999999999874433322
Q ss_pred -------CccCHHHHHHHHHHHh
Q 009974 299 -------EKLTATELEFAKDRIL 314 (521)
Q Consensus 299 -------~~it~~~~~~a~~~~~ 314 (521)
+.++..|+..++..+.
T Consensus 383 ~~~~~~~r~i~~~df~~a~~~i~ 405 (428)
T KOG0740|consen 383 FIDADKIRPITYPDFKNAFKNIK 405 (428)
T ss_pred hcchhccCCCCcchHHHHHHhhc
Confidence 2345555555555443
No 38
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.8e-32 Score=272.11 Aligned_cols=269 Identities=33% Similarity=0.461 Sum_probs=218.1
Q ss_pred CcCCccc--ccCcHHHHHHHHH--HHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-CEEEEeCchh
Q 009974 72 NVKTFKD--VKGCDDAKQELVE--VVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-PFFYRAGSEF 146 (521)
Q Consensus 72 ~~~~f~d--i~G~~~~k~~L~~--~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~-~~~~i~~~~~ 146 (521)
|...|++ |.|.+.-...+-+ +....--|+.-.++|.+.-+|+|||||||||||++||.|.+-++. +--.+|+.++
T Consensus 214 Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 214 PDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 4456776 5666655444433 223355567777899999999999999999999999999998864 5667899999
Q ss_pred hhhhhhhhhHHHHHHHHHHHhcC--------CcEEEEccccccccCCcCC---CcccHHHHHHHHHhhhcCccCCceEEE
Q 009974 147 EEMFVGVGARRVRSLFQAAKKKA--------PCIIFIDEIDAVGSTRKQW---EGHTKKTLHQLLVEMDGFEQNEGIILM 215 (521)
Q Consensus 147 ~~~~~g~~~~~i~~~f~~a~~~~--------p~Il~IDEiD~l~~~~~~~---~~~~~~~l~~ll~~l~~~~~~~~vivI 215 (521)
.++|+|++++++|++|..|.... --||++||||+++..|++. .+-.++++||||..|||+..-++++||
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVI 373 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVI 373 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEE
Confidence 99999999999999999985421 1399999999999988754 345689999999999999999999999
Q ss_pred eecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhcc----CCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHH
Q 009974 216 AATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD----KPLADDVDVKAIARGTPGFNGADLANLVNIAAI 291 (521)
Q Consensus 216 ~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~----~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~ 291 (521)
+-||+.+.||+||+|||||..++++.+||...|.+|++.|.+. ..+..|+|+.++|..|..|||++|+.+|+.|..
T Consensus 374 GMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S 453 (744)
T KOG0741|consen 374 GMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQS 453 (744)
T ss_pred eccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998864 356789999999999999999999999999988
Q ss_pred HHHHhC---------------CCccCHHHHHHHHHHHhcCccccccccchHHH-------------HHHHHHHhhhHHHh
Q 009974 292 KAAVDG---------------GEKLTATELEFAKDRILMGTERKTMFISEESK-------------KLTAYHESGHAIVA 343 (521)
Q Consensus 292 ~a~~~~---------------~~~it~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~~~a~heaghavv~ 343 (521)
.|..+. .-.|+.+||..|++.+.+. -..++++. ...-+.+-|.-+|+
T Consensus 454 ~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPA-----FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~ 528 (744)
T KOG0741|consen 454 FAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPA-----FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQ 528 (744)
T ss_pred HHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcc-----cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHH
Confidence 776541 1258899999999976542 12333332 23455666777776
Q ss_pred hh
Q 009974 344 FN 345 (521)
Q Consensus 344 ~~ 345 (521)
..
T Consensus 529 qv 530 (744)
T KOG0741|consen 529 QV 530 (744)
T ss_pred Hh
Confidence 54
No 39
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.5e-23 Score=205.98 Aligned_cols=212 Identities=26% Similarity=0.354 Sum_probs=167.3
Q ss_pred ccccCCCCcCCcccccCcHHHHHHHHH-HHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 009974 65 KEVMPEKNVKTFKDVKGCDDAKQELVE-VVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 143 (521)
Q Consensus 65 ~~~~~~~~~~~f~di~G~~~~k~~L~~-~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~ 143 (521)
+.-++-..+.+|+.|+-..+.|+++.+ +..+.+..+-|.+.|...-||.|||||||||||+++.|+|+.++..++-++.
T Consensus 189 W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeL 268 (457)
T KOG0743|consen 189 WRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLEL 268 (457)
T ss_pred ceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeee
Confidence 444455666899999999999999988 5556888899999999999999999999999999999999999999998887
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCC--------cccHHHHHHHHHhhhcCccCC--ceE
Q 009974 144 SEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE--------GHTKKTLHQLLVEMDGFEQNE--GII 213 (521)
Q Consensus 144 ~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~--------~~~~~~l~~ll~~l~~~~~~~--~vi 213 (521)
++.... ..++.++..+... +||+|+|||.-...+.... ....-++..||+.+||+...+ .-|
T Consensus 269 t~v~~n------~dLr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERI 340 (457)
T KOG0743|consen 269 TEVKLD------SDLRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERI 340 (457)
T ss_pred ccccCc------HHHHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceE
Confidence 665443 2266776665444 6999999998644322111 123467889999999998776 578
Q ss_pred EEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCC--CCHHHHHHHH
Q 009974 214 LMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPG--FNGADLANLV 286 (521)
Q Consensus 214 vI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g--~s~~dl~~lv 286 (521)
||.|||+++.|||||+||||+|.+|++...+...-+.+++.|+.... +..-+.++.+...+ .||||+...+
T Consensus 341 ivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 341 IVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 89999999999999999999999999999999999999999997643 11123334333332 5999987654
No 40
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.8e-23 Score=202.81 Aligned_cols=207 Identities=29% Similarity=0.442 Sum_probs=164.1
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhh
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 151 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~ 151 (521)
....|++|+-....+.++.++...-.+.+. ...+.++||||||||||||++|+.||...|..+-.+.+.++... -
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-G 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-c
Confidence 334599999999999999988876555544 34466899999999999999999999999999998888776432 1
Q ss_pred hhhhHHHHHHHHHHHhcC-CcEEEEccccccccCCcC--CCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccc
Q 009974 152 GVGARRVRSLFQAAKKKA-PCIIFIDEIDAVGSTRKQ--WEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPAL 228 (521)
Q Consensus 152 g~~~~~i~~~f~~a~~~~-p~Il~IDEiD~l~~~~~~--~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al 228 (521)
......+.++|+.++... .-+|||||.|.++..++. .+......+|.||-.-- ..+..++++.+||+|..+|.++
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV 502 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAV 502 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHH
Confidence 234577899999998754 458899999998776653 23445678888874332 3456789999999999999999
Q ss_pred cCCCccceEEecCCCCHHHHHHHHHHHhccCCCC---------------------------CcccHHHHHhcCCCCCHHH
Q 009974 229 TRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA---------------------------DDVDVKAIARGTPGFNGAD 281 (521)
Q Consensus 229 ~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~---------------------------~~~~l~~la~~~~g~s~~d 281 (521)
-. |||..++||+|..++|.+++..|+.++-.. .+.-+.+.|+.|+||||++
T Consensus 503 ~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGRE 580 (630)
T KOG0742|consen 503 ND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGRE 580 (630)
T ss_pred Hh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHH
Confidence 98 999999999999999999999998653210 0112567889999999999
Q ss_pred HHHHHH
Q 009974 282 LANLVN 287 (521)
Q Consensus 282 l~~lv~ 287 (521)
|..++-
T Consensus 581 iakLva 586 (630)
T KOG0742|consen 581 IAKLVA 586 (630)
T ss_pred HHHHHH
Confidence 999984
No 41
>CHL00181 cbbX CbbX; Provisional
Probab=99.89 E-value=2.3e-22 Score=200.22 Aligned_cols=223 Identities=21% Similarity=0.303 Sum_probs=164.1
Q ss_pred cccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCC---ceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEEeCch
Q 009974 76 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLP---KGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRAGSE 145 (521)
Q Consensus 76 f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p---~~vLL~GppGtGKT~la~alA~~~-------~~~~~~i~~~~ 145 (521)
+++++|++++|+++.+++.++..+..+...|...| .+++|+||||||||++|+++|+.+ ..+++.+++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 34899999999999999988666666666666544 358999999999999999999875 24699999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCC---
Q 009974 146 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD--- 222 (521)
Q Consensus 146 ~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~--- 222 (521)
+...|.|........+|+.+.. +||||||+|.+...++. .......+..|+..|+.. ..+++||++++...
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~~-~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~~~~~ 175 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDNE-RDYGSEAIEILLQVMENQ--RDDLVVIFAGYKDRMDK 175 (287)
T ss_pred HHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCCc-cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHH
Confidence 9999999888778888887643 59999999999654322 223467778888888753 35577777776422
Q ss_pred --CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCc-ccHHHH----Hhc--CCCC-CHHHHHHHHHHHHHH
Q 009974 223 --ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADD-VDVKAI----ARG--TPGF-NGADLANLVNIAAIK 292 (521)
Q Consensus 223 --~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~-~~l~~l----a~~--~~g~-s~~dl~~lv~~A~~~ 292 (521)
.++|++.+ ||+.++.|++|+.+++.+|++.++.+....-+ .....+ .+. .+.+ ++++++++++.|...
T Consensus 176 ~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 176 FYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMR 253 (287)
T ss_pred HHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHH
Confidence 34689998 99999999999999999999999976543211 112222 221 2333 489999999888775
Q ss_pred HHHh----CCCccCHHHH
Q 009974 293 AAVD----GGEKLTATEL 306 (521)
Q Consensus 293 a~~~----~~~~it~~~~ 306 (521)
.+.+ +...++.+|+
T Consensus 254 ~~~r~~~~~~~~~~~~~l 271 (287)
T CHL00181 254 QANRIFESGGRVLTKADL 271 (287)
T ss_pred HHHHHHcCCCCCCCHHHH
Confidence 5443 3344555554
No 42
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.89 E-value=6e-22 Score=195.63 Aligned_cols=213 Identities=21% Similarity=0.280 Sum_probs=157.8
Q ss_pred CcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCC---CceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEEeCc
Q 009974 75 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKL---PKGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRAGS 144 (521)
Q Consensus 75 ~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~---p~~vLL~GppGtGKT~la~alA~~~-------~~~~~~i~~~ 144 (521)
.+++++|++++|+++++++.+..........|..+ +.+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 47889999999999999998865544444455543 3579999999999999999999864 3478899999
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCC--
Q 009974 145 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD-- 222 (521)
Q Consensus 145 ~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~-- 222 (521)
++...+.|.....++.+|..+. ++||||||+|.|.... ........++.++..|+.. +..+++|++++..+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~--~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~~~ 156 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG--EKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDEMD 156 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC--ccchHHHHHHHHHHHHhcc--CCCEEEEecCCcchhH
Confidence 9999999998888999998875 3699999999996421 1123356778888888753 34456665554322
Q ss_pred ---CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHh---------cCCCCCHHHHHHHHHHH
Q 009974 223 ---ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-DVDVKAIAR---------GTPGFNGADLANLVNIA 289 (521)
Q Consensus 223 ---~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~-~~~l~~la~---------~~~g~s~~dl~~lv~~A 289 (521)
.++|++.+ ||+..+.|+.++.+++.+|++.++......- +..+..++. .....+++.++++++.|
T Consensus 157 ~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a 234 (261)
T TIGR02881 157 YFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKA 234 (261)
T ss_pred HHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 36889988 9999999999999999999999997654332 222333321 11224688999999887
Q ss_pred HHHHHHh
Q 009974 290 AIKAAVD 296 (521)
Q Consensus 290 ~~~a~~~ 296 (521)
....+.+
T Consensus 235 ~~~~~~r 241 (261)
T TIGR02881 235 IRRQAVR 241 (261)
T ss_pred HHHHHHH
Confidence 7665443
No 43
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.88 E-value=1.1e-21 Score=195.61 Aligned_cols=214 Identities=20% Similarity=0.256 Sum_probs=163.4
Q ss_pred Ccc-cccCcHHHHHHHHHHHHHhcCchhhhhcCCCC---CceEEEEcCCCCcHHHHHHHHHHhcC-------CCEEEEeC
Q 009974 75 TFK-DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKL---PKGILLTGAPGTGKTLLAKAIAGEAG-------VPFFYRAG 143 (521)
Q Consensus 75 ~f~-di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~---p~~vLL~GppGtGKT~la~alA~~~~-------~~~~~i~~ 143 (521)
.++ +++|.+++|+++.+++.++..+..+...|... ..+++|+||||||||++|+++|+.+. .+++.+++
T Consensus 19 ~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 19 QLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 344 69999999999999999887777777777654 34899999999999999999988652 37999999
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCC--
Q 009974 144 SEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP-- 221 (521)
Q Consensus 144 ~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~-- 221 (521)
+++...+.|.....++.+|+.+.. ++|||||++.+.+.+.. .......++.|+..|+. ...+++||++++..
T Consensus 99 ~~l~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~-~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~ 172 (284)
T TIGR02880 99 DDLVGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE-RDYGQEAIEILLQVMEN--QRDDLVVILAGYKDRM 172 (284)
T ss_pred HHHhHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc-cchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHH
Confidence 999888888888888888888754 59999999999643321 22345677788888874 34567888877643
Q ss_pred C---CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHhc-------CCCCCHHHHHHHHHHHH
Q 009974 222 D---ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-DVDVKAIARG-------TPGFNGADLANLVNIAA 290 (521)
Q Consensus 222 ~---~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~-~~~l~~la~~-------~~g~s~~dl~~lv~~A~ 290 (521)
+ .++|++.+ ||+..+.||+++.+++..|+++++++....- +.....+... -.--++++++++++.+.
T Consensus 173 ~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~ 250 (284)
T TIGR02880 173 DSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRAR 250 (284)
T ss_pred HHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 2 35889998 9999999999999999999999998754322 2223333332 12236899999999888
Q ss_pred HHHHHh
Q 009974 291 IKAAVD 296 (521)
Q Consensus 291 ~~a~~~ 296 (521)
...+.+
T Consensus 251 ~~~~~r 256 (284)
T TIGR02880 251 LRQANR 256 (284)
T ss_pred HHHHHH
Confidence 766543
No 44
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.87 E-value=5.6e-21 Score=178.80 Aligned_cols=191 Identities=25% Similarity=0.304 Sum_probs=131.1
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhh
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 151 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~ 151 (521)
.+.+|+|++|+++++..++-++...+.. .....++|||||||+||||||+.+|++++.+|...+++.+...
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~-- 89 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA-- 89 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC--
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH--
Confidence 4459999999999999998888764322 1123389999999999999999999999999999998654321
Q ss_pred hhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCcc----------------CCceEEE
Q 009974 152 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ----------------NEGIILM 215 (521)
Q Consensus 152 g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~----------------~~~vivI 215 (521)
..+..++.... ...||||||||.+. ......|+..|+.+.- -.++.+|
T Consensus 90 ----~dl~~il~~l~--~~~ILFIDEIHRln----------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 90 ----GDLAAILTNLK--EGDILFIDEIHRLN----------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp ----HHHHHHHHT----TT-EEEECTCCC------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred ----HHHHHHHHhcC--CCcEEEEechhhcc----------HHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 23334444443 34699999999992 3344456666664321 1348899
Q ss_pred eecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHhcCCCCCHHHHHHHHHHHH
Q 009974 216 AATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-DVDVKAIARGTPGFNGADLANLVNIAA 290 (521)
Q Consensus 216 ~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~-~~~l~~la~~~~g~s~~dl~~lv~~A~ 290 (521)
+||++...|.+.++. ||.....+..++.++..+|++......++.- +....++|.++.| +|+-..++++++.
T Consensus 154 gATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rvr 226 (233)
T PF05496_consen 154 GATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRVR 226 (233)
T ss_dssp EEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHHC
T ss_pred eeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 999999999999998 9999999999999999999998877666543 3337789999887 8988888887654
No 45
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.87 E-value=7.1e-22 Score=173.85 Aligned_cols=129 Identities=44% Similarity=0.721 Sum_probs=114.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcC-CcEEEEccccccccCCc-CCCc
Q 009974 113 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKA-PCIIFIDEIDAVGSTRK-QWEG 190 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~-p~Il~IDEiD~l~~~~~-~~~~ 190 (521)
|||+||||||||++|+.+|+.++.+++.+++.++.+.+.+...+.+..+|..+.... |+||||||+|.+....+ ....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 699999999999999999999999999999999998888999999999999999887 99999999999987762 2233
Q ss_pred ccHHHHHHHHHhhhcCccC-CceEEEeecCCCCCCCccccCCCccceEEecCC
Q 009974 191 HTKKTLHQLLVEMDGFEQN-EGIILMAATNLPDILDPALTRPGRFDRHIVVPN 242 (521)
Q Consensus 191 ~~~~~l~~ll~~l~~~~~~-~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~ 242 (521)
.....++.++..++..... .+++||++||.++.++++++| +||+..+++|+
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 4567788899999887655 569999999999999999998 89999999874
No 46
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.84 E-value=2.1e-20 Score=201.30 Aligned_cols=265 Identities=20% Similarity=0.307 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCcccccccccCCCCcCCcccccCcHHHHHHHHHHHHHh
Q 009974 17 ISTILFTVAVGLVWLMGAAALQKYIGSLGGIGTSGVGSSSSYAPKELNKEVMPEKNVKTFKDVKGCDDAKQELVEVVEYL 96 (521)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~di~G~~~~k~~L~~~v~~l 96 (521)
+.++.|.+++|++|+...+..+........................+..++.....+.+|++++|+++.++.++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~-- 82 (531)
T TIGR02902 5 IVQIIFLIIIGLYFFNALKNQQTNKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALC-- 82 (531)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCCeeeeehhhhHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHh--
Confidence 345666777777666555543321110000000000011122223445566666677899999999999888875431
Q ss_pred cCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEEeCchh-------hhhhhhhhh----
Q 009974 97 KNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYRAGSEF-------EEMFVGVGA---- 155 (521)
Q Consensus 97 ~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~----------~~~~~~i~~~~~-------~~~~~g~~~---- 155 (521)
...|.++||+||||||||++|+++++.+ +.+|+.++|... .+...+...
T Consensus 83 ----------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~ 152 (531)
T TIGR02902 83 ----------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIY 152 (531)
T ss_pred ----------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchh
Confidence 1234589999999999999999998642 468999998631 111111000
Q ss_pred ------------HHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc----------------
Q 009974 156 ------------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------------- 207 (521)
Q Consensus 156 ------------~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~---------------- 207 (521)
......+..+ ...+|||||+|.|. ...++.|+..++...
T Consensus 153 ~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~----------~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~ 219 (531)
T TIGR02902 153 QGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELH----------PVQMNKLLKVLEDRKVFLDSAYYNSENPNIP 219 (531)
T ss_pred ccccccccCCcccccCchhhcc---CCcEEEEechhhCC----------HHHHHHHHHHHHhCeeeeccccccccCcccc
Confidence 0001122222 23599999999993 344555555553210
Q ss_pred ----------cCCc-eEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCC
Q 009974 208 ----------QNEG-IILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTP 275 (521)
Q Consensus 208 ----------~~~~-vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~ 275 (521)
.... .++++|||.|+.+++++++ |+. .+.|++++.+++.+|+++.+++..+. ++..++.++..+.
T Consensus 220 ~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~ 296 (531)
T TIGR02902 220 SHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS 296 (531)
T ss_pred cchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh
Confidence 0112 3455667789999999998 884 78899999999999999999876544 3334666676654
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009974 276 GFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKD 311 (521)
Q Consensus 276 g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~ 311 (521)
+++++.++++.|+..|..+++..|+.+|+++++.
T Consensus 297 --n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 297 --NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred --hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 8999999999999888888888999999999875
No 47
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.84 E-value=1e-19 Score=185.74 Aligned_cols=214 Identities=25% Similarity=0.316 Sum_probs=161.5
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhh
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 151 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~ 151 (521)
.+.+|++++|+++.++.+..++...+.. ..++.+++||||||||||++|+++|++++.++..+++..+..
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~--- 89 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK--- 89 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC---
Confidence 3458999999999999999888654322 234568999999999999999999999999988877654322
Q ss_pred hhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc----------------cCCceEEE
Q 009974 152 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE----------------QNEGIILM 215 (521)
Q Consensus 152 g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~----------------~~~~vivI 215 (521)
...+..++... ..++||||||+|.+... .... +...++... .-.++.+|
T Consensus 90 ---~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-------~~e~---l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li 154 (328)
T PRK00080 90 ---PGDLAAILTNL--EEGDVLFIDEIHRLSPV-------VEEI---LYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLI 154 (328)
T ss_pred ---hHHHHHHHHhc--ccCCEEEEecHhhcchH-------HHHH---HHHHHHhcceeeeeccCccccceeecCCCceEE
Confidence 12333444433 34679999999998431 1222 223333211 11347889
Q ss_pred eecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 009974 216 AATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAA 294 (521)
Q Consensus 216 ~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~ 294 (521)
++||++..+++++++ ||...+.+++|+.+++.+|++..+...+.. ++..+..+++.+.| +++.+..+++.+...+.
T Consensus 155 ~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~~~a~ 231 (328)
T PRK00080 155 GATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVRDFAQ 231 (328)
T ss_pred eecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHHHHHH
Confidence 999999999999987 999899999999999999999988766544 33347888888886 67999999998887777
Q ss_pred HhCCCccCHHHHHHHHHHH
Q 009974 295 VDGGEKLTATELEFAKDRI 313 (521)
Q Consensus 295 ~~~~~~it~~~~~~a~~~~ 313 (521)
..+...|+.+++..+++..
T Consensus 232 ~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 232 VKGDGVITKEIADKALDML 250 (328)
T ss_pred HcCCCCCCHHHHHHHHHHh
Confidence 7777899999999998754
No 48
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.84 E-value=1.4e-19 Score=172.29 Aligned_cols=215 Identities=24% Similarity=0.288 Sum_probs=170.8
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhh
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 151 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~ 151 (521)
.+.+|+|.+|++++|++|+-++...+.. ....-++|||||||.||||||..+|+++|+.+-..++..+...
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~-- 91 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP-- 91 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh--
Confidence 4568999999999999999988865432 2344589999999999999999999999999999988776543
Q ss_pred hhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc--------c--------CCceEEE
Q 009974 152 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--------Q--------NEGIILM 215 (521)
Q Consensus 152 g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~--------~--------~~~vivI 215 (521)
..+..++.....+ +|+||||||.+.+. ...++ ...|+.+. + -.++.+|
T Consensus 92 ----gDlaaiLt~Le~~--DVLFIDEIHrl~~~-------vEE~L---YpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 92 ----GDLAAILTNLEEG--DVLFIDEIHRLSPA-------VEEVL---YPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred ----hhHHHHHhcCCcC--CeEEEehhhhcChh-------HHHHh---hhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 3344555554444 69999999999442 23333 33344321 1 1358899
Q ss_pred eecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 009974 216 AATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-DVDVKAIARGTPGFNGADLANLVNIAAIKAA 294 (521)
Q Consensus 216 ~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~-~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~ 294 (521)
+||.+...|...|+. ||.....+..++.++..+|+........+.- +....++|++..| +|+-...++++....|.
T Consensus 156 GATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa~ 232 (332)
T COG2255 156 GATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFAQ 232 (332)
T ss_pred eeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHHH
Confidence 999999999999998 9999999999999999999999887665543 3346788998887 89999999999999999
Q ss_pred HhCCCccCHHHHHHHHHHHh
Q 009974 295 VDGGEKLTATELEFAKDRIL 314 (521)
Q Consensus 295 ~~~~~~it~~~~~~a~~~~~ 314 (521)
..+...|+.+....|++...
T Consensus 233 V~~~~~I~~~ia~~aL~~L~ 252 (332)
T COG2255 233 VKGDGDIDRDIADKALKMLD 252 (332)
T ss_pred HhcCCcccHHHHHHHHHHhC
Confidence 99999999999999988654
No 49
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.84 E-value=1.6e-19 Score=182.67 Aligned_cols=211 Identities=24% Similarity=0.262 Sum_probs=156.2
Q ss_pred CCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhhh
Q 009974 74 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGV 153 (521)
Q Consensus 74 ~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~ 153 (521)
.+|+|++|+++++++|..++...... ...+.+++|+||||||||++|+++|++++.++...+++.....
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~---- 69 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP---- 69 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCc----
Confidence 37999999999999999888643321 2245589999999999999999999999998877665433211
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc----------------cCCceEEEee
Q 009974 154 GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE----------------QNEGIILMAA 217 (521)
Q Consensus 154 ~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~----------------~~~~vivI~t 217 (521)
..+...+... ..+.+|||||+|.+... ....|+..++... ...++.+|++
T Consensus 70 --~~l~~~l~~~--~~~~vl~iDEi~~l~~~----------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~ 135 (305)
T TIGR00635 70 --GDLAAILTNL--EEGDVLFIDEIHRLSPA----------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGA 135 (305)
T ss_pred --hhHHHHHHhc--ccCCEEEEehHhhhCHH----------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEe
Confidence 1222333222 34679999999998432 2222333333211 1234789999
Q ss_pred cCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 009974 218 TNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 296 (521)
Q Consensus 218 tn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~ 296 (521)
||++..+++++++ ||...+.+++|+.+++.++++..+...... ++..+..+++.+.| +++.+.++++.+...|...
T Consensus 136 t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~a~~~ 212 (305)
T TIGR00635 136 TTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDFAQVR 212 (305)
T ss_pred cCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHHc
Confidence 9999999999988 998899999999999999999888754443 33447788888877 5788889998887777677
Q ss_pred CCCccCHHHHHHHHHH
Q 009974 297 GGEKLTATELEFAKDR 312 (521)
Q Consensus 297 ~~~~it~~~~~~a~~~ 312 (521)
+...|+.+++..++..
T Consensus 213 ~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 213 GQKIINRDIALKALEM 228 (305)
T ss_pred CCCCcCHHHHHHHHHH
Confidence 7778999999998876
No 50
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.1e-20 Score=179.09 Aligned_cols=234 Identities=21% Similarity=0.264 Sum_probs=175.1
Q ss_pred CCcccccCcHHHHHHHHHHHHH-hcCchhhhhc-CCCCCceEEEEcCCCCcHHHHHHHHHHhcC---------CCEEEEe
Q 009974 74 KTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRL-GGKLPKGILLTGAPGTGKTLLAKAIAGEAG---------VPFFYRA 142 (521)
Q Consensus 74 ~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~-g~~~p~~vLL~GppGtGKT~la~alA~~~~---------~~~~~i~ 142 (521)
.-|+.++-...+|++|...+.. +...++-..- -....+-+||+||||||||+|++++|..+. ..++.+|
T Consensus 139 glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin 218 (423)
T KOG0744|consen 139 GLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN 218 (423)
T ss_pred hhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe
Confidence 3588999889999999887654 3333321110 123346799999999999999999999774 3478999
Q ss_pred CchhhhhhhhhhhHHHHHHHHHHHhc---CCc--EEEEccccccccCCcC-----CCcccHHHHHHHHHhhhcCccCCce
Q 009974 143 GSEFEEMFVGVGARRVRSLFQAAKKK---APC--IIFIDEIDAVGSTRKQ-----WEGHTKKTLHQLLVEMDGFEQNEGI 212 (521)
Q Consensus 143 ~~~~~~~~~g~~~~~i~~~f~~a~~~---~p~--Il~IDEiD~l~~~~~~-----~~~~~~~~l~~ll~~l~~~~~~~~v 212 (521)
+..+.++|.+++.+.+..+|++.... ..+ .++|||+++++..|.. .+...-+++|.+|.++|.+....+|
T Consensus 219 shsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nv 298 (423)
T KOG0744|consen 219 SHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNV 298 (423)
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCE
Confidence 99999999999999999999988652 223 5669999999766532 2334568999999999999999999
Q ss_pred EEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccC---C----------CCCcc-----cHHHHHh-c
Q 009974 213 ILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK---P----------LADDV-----DVKAIAR-G 273 (521)
Q Consensus 213 ivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~---~----------~~~~~-----~l~~la~-~ 273 (521)
++++|+|-.+.||.|+.. |-|-+.++++|+...+.+|++..+... + ....+ ....+.. .
T Consensus 299 liL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~ 376 (423)
T KOG0744|consen 299 LILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELS 376 (423)
T ss_pred EEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHh
Confidence 999999999999999998 999999999999999999999887542 0 00011 1122222 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009974 274 TPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKD 311 (521)
Q Consensus 274 ~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~ 311 (521)
+.|.||+.|+.+=--|. |..-....|+.+++..|+-
T Consensus 377 ~~gLSGRtlrkLP~Lah--a~y~~~~~v~~~~fl~al~ 412 (423)
T KOG0744|consen 377 TVGLSGRTLRKLPLLAH--AEYFRTFTVDLSNFLLALL 412 (423)
T ss_pred hcCCccchHhhhhHHHH--HhccCCCccChHHHHHHHH
Confidence 57899999988754332 3333345788888776653
No 51
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.1e-19 Score=188.72 Aligned_cols=204 Identities=29% Similarity=0.454 Sum_probs=169.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCc
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK 186 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~ 186 (521)
......+||+|+||||||++++++|+++|.+++.++|.++...-.+..+.++...|.+|+...|+|||+-++|.++.+++
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~d 507 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQD 507 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCC
Confidence 34445799999999999999999999999999999999999888888889999999999999999999999999986554
Q ss_pred CCCc-ccHHHHHHHHHhhhcCc-cCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCc
Q 009974 187 QWEG-HTKKTLHQLLVEMDGFE-QNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADD 264 (521)
Q Consensus 187 ~~~~-~~~~~l~~ll~~l~~~~-~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~ 264 (521)
+... ...+.++.++. .+.+. +..+++||++|+..+.+++.+++ -|-..|.++.|+.++|.+||+.|+....+..+
T Consensus 508 gged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~ 584 (953)
T KOG0736|consen 508 GGEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQD 584 (953)
T ss_pred CchhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchH
Confidence 4211 12334444444 33333 56789999999999999999998 78889999999999999999999999999999
Q ss_pred ccHHHHHhcCCCCCHHHHHHHHHHHHHHHH---HhC-----------------CCccCHHHHHHHHHHH
Q 009974 265 VDVKAIARGTPGFNGADLANLVNIAAIKAA---VDG-----------------GEKLTATELEFAKDRI 313 (521)
Q Consensus 265 ~~l~~la~~~~g~s~~dl~~lv~~A~~~a~---~~~-----------------~~~it~~~~~~a~~~~ 313 (521)
+....++.+|.|||.+++..++...-..+. .+. ...++.+|+..++++.
T Consensus 585 v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~ 653 (953)
T KOG0736|consen 585 VNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRL 653 (953)
T ss_pred HHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHH
Confidence 999999999999999999999866522221 111 1468999999999865
No 52
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2e-18 Score=180.97 Aligned_cols=236 Identities=23% Similarity=0.278 Sum_probs=176.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCC----CEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccC
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAGV----PFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGST 184 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~~----~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~ 184 (521)
.+.+|||+||+|||||.|++++++++.. .+..++|+.+...-.....+.++.+|..+..++|+||++|++|.+.+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~ 509 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASA 509 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhcc
Confidence 3458999999999999999999998854 466889998877666666788899999999999999999999999874
Q ss_pred CcCCCc---ccHHHHHHHHHh-hhcC-ccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccC
Q 009974 185 RKQWEG---HTKKTLHQLLVE-MDGF-EQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK 259 (521)
Q Consensus 185 ~~~~~~---~~~~~l~~ll~~-l~~~-~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~ 259 (521)
.+..++ ...+.++.++.. +..+ ..+..+.||++.+....+++.|.+|++|+.++.++.|+..+|.+||++.+.+.
T Consensus 510 s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~ 589 (952)
T KOG0735|consen 510 SSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKN 589 (952)
T ss_pred CcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhh
Confidence 332222 223334444422 2222 34555799999999999999999999999999999999999999999999876
Q ss_pred CCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh----CCCccCHHHHHHHHHHHhcCccccccccc---hHHHHH
Q 009974 260 PLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD----GGEKLTATELEFAKDRILMGTERKTMFIS---EESKKL 331 (521)
Q Consensus 260 ~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~----~~~~it~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ 331 (521)
... ...|++.++..|+||...|+..++.+|...|..+ +.+.+|.++|.+++....+-.-+...... -..-.+
T Consensus 590 ~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~di 669 (952)
T KOG0735|consen 590 LSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDI 669 (952)
T ss_pred hhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhccccccCCCCceec
Confidence 522 2224555999999999999999999998877632 33478999999999887653322111000 111234
Q ss_pred HHHHHhhhHHHhh
Q 009974 332 TAYHESGHAIVAF 344 (521)
Q Consensus 332 ~a~heaghavv~~ 344 (521)
-..||+-.++...
T Consensus 670 gg~~~~k~~l~~~ 682 (952)
T KOG0735|consen 670 GGLFEAKKVLEEV 682 (952)
T ss_pred ccHHHHHHHHHHH
Confidence 5677777776543
No 53
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.79 E-value=3.5e-18 Score=170.28 Aligned_cols=203 Identities=30% Similarity=0.406 Sum_probs=140.0
Q ss_pred CcCCcccccCcHHHHHH---HHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 72 NVKTFKDVKGCDDAKQE---LVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~---L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
.+.+|+|++|++..... |.++++ +... .+++|||||||||||+|+.||+..+.+|..+|+..
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~-----------~~~l-~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVE-----------AGHL-HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHh-----------cCCC-ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 34599999999986533 333333 1222 38999999999999999999999999999998743
Q ss_pred hhhhhhhHHHHHHHHHHHhc----CCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeec-CCC-C
Q 009974 149 MFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT-NLP-D 222 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~~~----~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~tt-n~~-~ 222 (521)
.+.+.++.+++.|+.. ...|||||||+.+-. .....||-.++ +..+++|++| ..| -
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK----------~QQD~lLp~vE----~G~iilIGATTENPsF 145 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK----------AQQDALLPHVE----NGTIILIGATTENPSF 145 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh----------hhhhhhhhhhc----CCeEEEEeccCCCCCe
Confidence 3356788999998553 357999999999933 23345666666 5678888755 344 4
Q ss_pred CCCccccCCCccceEEecCCCCHHHHHHHHHHHhcc--CCCC------CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 009974 223 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD--KPLA------DDVDVKAIARGTPGFNGADLANLVNIAAIKAA 294 (521)
Q Consensus 223 ~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~--~~~~------~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~ 294 (521)
.++++|++ |. +++.+.+.+.++..++++.-+.. .++. ++.....++..+. +|.+.++|..-+.+.
T Consensus 146 ~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~----GD~R~aLN~LE~~~~ 218 (436)
T COG2256 146 ELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSN----GDARRALNLLELAAL 218 (436)
T ss_pred eecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcC----chHHHHHHHHHHHHH
Confidence 78999998 77 58899999999999999884422 2222 2334566666554 466666653333222
Q ss_pred Hh-CCCccCHHHHHHHHHHHh
Q 009974 295 VD-GGEKLTATELEFAKDRIL 314 (521)
Q Consensus 295 ~~-~~~~it~~~~~~a~~~~~ 314 (521)
.. ..+.++.+.+++.+.+..
T Consensus 219 ~~~~~~~~~~~~l~~~l~~~~ 239 (436)
T COG2256 219 SAEPDEVLILELLEEILQRRS 239 (436)
T ss_pred hcCCCcccCHHHHHHHHhhhh
Confidence 22 122455788887776643
No 54
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=4.6e-18 Score=177.21 Aligned_cols=204 Identities=20% Similarity=0.252 Sum_probs=151.6
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 137 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~------------ 137 (521)
...+.+|+|++|++.+...|...+. ..+.|..+||+||||||||++|+.+|+.+++.
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~-----------~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~ 79 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALK-----------SGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT 79 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc
Confidence 4455699999999999998888775 23456679999999999999999999998763
Q ss_pred ------------EEEEeCchhhhhhhhhhhHHHHHHHHHHH----hcCCcEEEEccccccccCCcCCCcccHHHHHHHHH
Q 009974 138 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 201 (521)
Q Consensus 138 ------------~~~i~~~~~~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~ 201 (521)
++.+++.. ..+...++.+.+.+. .+...|+||||+|.+ ....++.||.
T Consensus 80 sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L----------s~~A~NALLK 143 (484)
T PRK14956 80 SCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML----------TDQSFNALLK 143 (484)
T ss_pred HHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc----------CHHHHHHHHH
Confidence 22222211 112344555544443 234569999999999 3457888898
Q ss_pred hhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHH
Q 009974 202 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGA 280 (521)
Q Consensus 202 ~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~ 280 (521)
.++. ....+++|.+|+.+..|.+.+++ |+ .++.|..++.++..+.+++.+...++. ++..+..|++...| +.|
T Consensus 144 tLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~R 217 (484)
T PRK14956 144 TLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVR 217 (484)
T ss_pred Hhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHH
Confidence 8874 45678889999999999999998 88 478899999999999999988766553 44457888887776 788
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009974 281 DLANLVNIAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 281 dl~~lv~~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
+.-++++++... ....||.+++.+.+
T Consensus 218 dAL~lLeq~i~~----~~~~it~~~V~~~l 243 (484)
T PRK14956 218 DMLSFMEQAIVF----TDSKLTGVKIRKMI 243 (484)
T ss_pred HHHHHHHHHHHh----CCCCcCHHHHHHHh
Confidence 888888776532 23468888886654
No 55
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.78 E-value=5.8e-18 Score=190.61 Aligned_cols=197 Identities=26% Similarity=0.334 Sum_probs=138.0
Q ss_pred cccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh---------h
Q 009974 78 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE---------E 148 (521)
Q Consensus 78 di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~---------~ 148 (521)
++.|++++|+.+.+.+...... +...+..++|+||||||||++|+++|+.++.+++.+++..+. .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 4899999999999876643211 111223799999999999999999999999999999876432 2
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhc-----Cc--------cCCceEEE
Q 009974 149 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG-----FE--------QNEGIILM 215 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~-----~~--------~~~~vivI 215 (521)
.|.|.....+...|..+....| ||||||||.+.+..+. . ..+.|+..+|. +. +..++++|
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~---~---~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG---D---PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC---C---HHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 4566666777788888766655 8999999999754221 1 23345554442 11 12578999
Q ss_pred eecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhc-----cCCCC------CcccHHHHHh-cCCCCCHHHHH
Q 009974 216 AATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ-----DKPLA------DDVDVKAIAR-GTPGFNGADLA 283 (521)
Q Consensus 216 ~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~-----~~~~~------~~~~l~~la~-~~~g~s~~dl~ 283 (521)
+|||.++.+++++++ ||+ .|.|+.|+.+++..|++.++. ...+. ++..+..+++ .+.....++|+
T Consensus 468 ~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~ 544 (775)
T TIGR00763 468 ATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLE 544 (775)
T ss_pred EecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHH
Confidence 999999999999998 995 789999999999999988762 12221 2233555554 33344455655
Q ss_pred HHHHHHH
Q 009974 284 NLVNIAA 290 (521)
Q Consensus 284 ~lv~~A~ 290 (521)
..+....
T Consensus 545 r~i~~~~ 551 (775)
T TIGR00763 545 RQIEKIC 551 (775)
T ss_pred HHHHHHH
Confidence 5444433
No 56
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=3.5e-18 Score=182.08 Aligned_cols=203 Identities=17% Similarity=0.259 Sum_probs=151.0
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 137 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~------------ 137 (521)
+..+.+|+||+|++.+++.|++.+.. .+.++.+||+||+|||||++|+.+|+.+++.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 34456999999999999999988762 4566789999999999999999999998761
Q ss_pred -----------------EEEEeCchhhhhhhhhhhHHHHHHHHHHH----hcCCcEEEEccccccccCCcCCCcccHHHH
Q 009974 138 -----------------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTL 196 (521)
Q Consensus 138 -----------------~~~i~~~~~~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l 196 (521)
++.++..+ ..+...++++.+.+. .+...|+||||+|.| .....
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L----------s~~Aa 141 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML----------TNHAF 141 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc----------CHHHH
Confidence 12222211 122345666665543 234579999999999 34577
Q ss_pred HHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHhcCC
Q 009974 197 HQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADD-VDVKAIARGTP 275 (521)
Q Consensus 197 ~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~-~~l~~la~~~~ 275 (521)
|.||+.|+. ...+++||.+||.++.|.+.+++ |+ .++.|+.++.++..+.++.++...++..+ ..+..|++.+.
T Consensus 142 NALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~ 216 (700)
T PRK12323 142 NAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQ 216 (700)
T ss_pred HHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 899999884 45677888899999999999998 87 68999999999999999988876555433 33677787777
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 009974 276 GFNGADLANLVNIAAIKAAVDGGEKLTATELEFA 309 (521)
Q Consensus 276 g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a 309 (521)
| +.++..+++.++.. .+...|+.+++...
T Consensus 217 G-s~RdALsLLdQaia----~~~~~It~~~V~~~ 245 (700)
T PRK12323 217 G-SMRDALSLTDQAIA----YSAGNVSEEAVRGM 245 (700)
T ss_pred C-CHHHHHHHHHHHHH----hccCCcCHHHHHHH
Confidence 5 88998888876653 23456777666543
No 57
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=9.1e-18 Score=181.00 Aligned_cols=202 Identities=20% Similarity=0.294 Sum_probs=150.2
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 137 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~------------ 137 (521)
+..+.+|+||+|++.+++.|++.+. +.+.++.+||+||+|||||++++++|+.+++.
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~-----------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHh-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 3445699999999999999988775 34567788999999999999999999988752
Q ss_pred ------------EEEEeCchhhhhhhhhhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHH
Q 009974 138 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 201 (521)
Q Consensus 138 ------------~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~ 201 (521)
++.++..+ ..+...++.+++.+.. +...|+||||+|.| .....|.||+
T Consensus 78 sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L----------T~~A~NALLK 141 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML----------TNHAFNAMLK 141 (830)
T ss_pred HHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC----------CHHHHHHHHH
Confidence 22222211 1223456666665542 23469999999999 3456788898
Q ss_pred hhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHH
Q 009974 202 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGA 280 (521)
Q Consensus 202 ~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~ 280 (521)
.|+. ...++.||.+||.++.|.+.+++ |+ .++.|..++.++..+.|+..+...++. ++..+..|++...| +.+
T Consensus 142 tLEE--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-smR 215 (830)
T PRK07003 142 TLEE--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SMR 215 (830)
T ss_pred HHHh--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8884 34578888899999999999988 88 689999999999999999998766554 34447778888776 788
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 009974 281 DLANLVNIAAIKAAVDGGEKLTATELEF 308 (521)
Q Consensus 281 dl~~lv~~A~~~a~~~~~~~it~~~~~~ 308 (521)
+..+++.++... +...|+.+++..
T Consensus 216 dALsLLdQAia~----~~~~It~~~V~~ 239 (830)
T PRK07003 216 DALSLTDQAIAY----SANEVTETAVSG 239 (830)
T ss_pred HHHHHHHHHHHh----ccCCcCHHHHHH
Confidence 888887766543 334577666544
No 58
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.77 E-value=9.9e-18 Score=187.76 Aligned_cols=223 Identities=18% Similarity=0.264 Sum_probs=162.6
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEE
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYR 141 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~----------~~~~~~i 141 (521)
.+.++++++|.++...++.+++. .. ...+++|+||||||||++++++|.++ +..++.+
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~---~~---------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLC---RR---------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHh---cC---------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 44589999999987666554442 21 23489999999999999999999987 6778999
Q ss_pred eCchhh--hhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecC
Q 009974 142 AGSEFE--EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 219 (521)
Q Consensus 142 ~~~~~~--~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn 219 (521)
+++.+. ..|.|+.+++++.+|+.+....|+||||||+|.+.+......+. ....+.|...+. +..+.+|++||
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~-~~~~~~L~~~l~----~g~i~~IgaTt 319 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS-MDASNLLKPALS----SGKLRCIGSTT 319 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc-HHHHHHHHHHHh----CCCeEEEEecC
Confidence 988886 46889999999999999988788999999999997654322221 222333444443 56799999999
Q ss_pred CCC-----CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccC----CC-CCcccHHHHHhcCCCC-----CHHHHHH
Q 009974 220 LPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK----PL-ADDVDVKAIARGTPGF-----NGADLAN 284 (521)
Q Consensus 220 ~~~-----~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~----~~-~~~~~l~~la~~~~g~-----s~~dl~~ 284 (521)
..+ .+|+++.| ||. .|.++.|+.+++.+|++...... .+ -.+..+..++..+..| -|...-.
T Consensus 320 ~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~ 396 (731)
T TIGR02639 320 YEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAID 396 (731)
T ss_pred HHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHH
Confidence 743 57999999 996 79999999999999999766432 11 2344466666655443 2444566
Q ss_pred HHHHHHHHHHHh----CCCccCHHHHHHHHHHHh
Q 009974 285 LVNIAAIKAAVD----GGEKLTATELEFAKDRIL 314 (521)
Q Consensus 285 lv~~A~~~a~~~----~~~~it~~~~~~a~~~~~ 314 (521)
++++|......+ ....|+.+|+..++.+..
T Consensus 397 lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 397 VIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred HHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 677666543322 234699999999998764
No 59
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=2.5e-17 Score=174.21 Aligned_cols=203 Identities=19% Similarity=0.252 Sum_probs=145.4
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC---------------
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV--------------- 136 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~--------------- 136 (521)
.+.+|+|++|++.+++.|...+. ..+.|.++|||||||||||++|+++|+.+++
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~-----------~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALK-----------KNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 45699999999999888887665 2346678999999999999999999998865
Q ss_pred ---------CEEEEeCchhhhhhhhhhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhh
Q 009974 137 ---------PFFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEM 203 (521)
Q Consensus 137 ---------~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l 203 (521)
.++.++++. ..+...++.+.+.+.. +...||||||+|.+. ...++.|+..+
T Consensus 78 ~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt----------~~a~~~LLk~L 141 (472)
T PRK14962 78 RSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT----------KEAFNALLKTL 141 (472)
T ss_pred HHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH----------HHHHHHHHHHH
Confidence 244444421 1122345555544432 234699999999983 34567788888
Q ss_pred hcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHH
Q 009974 204 DGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADL 282 (521)
Q Consensus 204 ~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl 282 (521)
+. ....+++|++|+.+..+++++.+ |+ ..+.|.+|+.++...+++..+...+.. ++..+..++..+.| +.+++
T Consensus 142 E~--p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-dlR~a 215 (472)
T PRK14962 142 EE--PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-GLRDA 215 (472)
T ss_pred Hh--CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHH
Confidence 74 33467777777778899999988 88 489999999999999999988665433 34457788887654 66666
Q ss_pred HHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009974 283 ANLVNIAAIKAAVDGGEKLTATELEFAKD 311 (521)
Q Consensus 283 ~~lv~~A~~~a~~~~~~~it~~~~~~a~~ 311 (521)
-+.++.+... ....||.+++..++.
T Consensus 216 ln~Le~l~~~----~~~~It~e~V~~~l~ 240 (472)
T PRK14962 216 LTMLEQVWKF----SEGKITLETVHEALG 240 (472)
T ss_pred HHHHHHHHHh----cCCCCCHHHHHHHHc
Confidence 6666544332 224599999987764
No 60
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=5.4e-17 Score=167.65 Aligned_cols=204 Identities=17% Similarity=0.225 Sum_probs=147.6
Q ss_pred CCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE------------
Q 009974 71 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF------------ 138 (521)
Q Consensus 71 ~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~------------ 138 (521)
..+.+|+||+|++.+++.|+..+. ..+.|+.+||+||||||||++|+++|+.+++..
T Consensus 10 yrP~~~~~iiGq~~~~~~l~~~~~-----------~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 10 WRPQYFRDIIGQKHIVTAISNGLS-----------LGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred hCCCchhhccChHHHHHHHHHHHH-----------cCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 344699999999999999888775 234677899999999999999999999886421
Q ss_pred ------------EEEeCchhhhhhhhhhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHh
Q 009974 139 ------------FYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 202 (521)
Q Consensus 139 ------------~~i~~~~~~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~ 202 (521)
+.++++. ......++.+.+.+.. +...|++|||+|.+ .....+.|+..
T Consensus 79 c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l----------~~~a~naLLk~ 142 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML----------SRHSFNALLKT 142 (363)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc----------CHHHHHHHHHH
Confidence 1111110 0123445565555432 23459999999998 23456778888
Q ss_pred hhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHH
Q 009974 203 MDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGAD 281 (521)
Q Consensus 203 l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~d 281 (521)
++. ....+.+|.+|+.++.+.+.+++ |+ ..+.|++|+.++..++++..++..+.. ++..+..++..+.| ++++
T Consensus 143 lEe--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~ 216 (363)
T PRK14961 143 LEE--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRD 216 (363)
T ss_pred Hhc--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 875 34456667777778888888877 77 588999999999999999988776543 34456778887765 7888
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009974 282 LANLVNIAAIKAAVDGGEKLTATELEFAKD 311 (521)
Q Consensus 282 l~~lv~~A~~~a~~~~~~~it~~~~~~a~~ 311 (521)
+.++++.+... +...||.+++.+++.
T Consensus 217 al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 217 ALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 88888766432 467899998877653
No 61
>PRK04195 replication factor C large subunit; Provisional
Probab=99.75 E-value=3.5e-17 Score=175.28 Aligned_cols=210 Identities=24% Similarity=0.283 Sum_probs=149.4
Q ss_pred cCCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009974 68 MPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 147 (521)
Q Consensus 68 ~~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 147 (521)
.....+.+|+||+|++++++.|..++..... +.+++++||+||||||||++|+++|++++.+++.+++++..
T Consensus 5 ~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r 76 (482)
T PRK04195 5 VEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR 76 (482)
T ss_pred hhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence 3455667999999999999999998875431 23467999999999999999999999999999999998754
Q ss_pred hhhhhhhhHHHHHHHHHHHh------cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCC
Q 009974 148 EMFVGVGARRVRSLFQAAKK------KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 221 (521)
Q Consensus 148 ~~~~g~~~~~i~~~f~~a~~------~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~ 221 (521)
.. ..++.+...+.. ..+.+|+|||+|.+.... ....++.++..++. .+..+|++||.+
T Consensus 77 ~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~------d~~~~~aL~~~l~~----~~~~iIli~n~~ 140 (482)
T PRK04195 77 TA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE------DRGGARAILELIKK----AKQPIILTANDP 140 (482)
T ss_pred cH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc------chhHHHHHHHHHHc----CCCCEEEeccCc
Confidence 32 122222222221 246799999999985421 22345566666652 334566678888
Q ss_pred CCCCc-cccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 009974 222 DILDP-ALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGE 299 (521)
Q Consensus 222 ~~ld~-al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~ 299 (521)
..+++ .+++ | ...+.|++|+.+++..+++.++...++. ++..+..|+..+. +|++.+++..... ..+..
T Consensus 141 ~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~----GDlR~ain~Lq~~--a~~~~ 211 (482)
T PRK04195 141 YDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSG----GDLRSAINDLQAI--AEGYG 211 (482)
T ss_pred cccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHH--hcCCC
Confidence 88776 5554 4 4689999999999999999998766543 3445777887654 5778877766553 34556
Q ss_pred ccCHHHHHHHH
Q 009974 300 KLTATELEFAK 310 (521)
Q Consensus 300 ~it~~~~~~a~ 310 (521)
.++.+++....
T Consensus 212 ~it~~~v~~~~ 222 (482)
T PRK04195 212 KLTLEDVKTLG 222 (482)
T ss_pred CCcHHHHHHhh
Confidence 78888886543
No 62
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=2.2e-17 Score=176.44 Aligned_cols=204 Identities=16% Similarity=0.225 Sum_probs=150.6
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 137 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~------------ 137 (521)
...+.+|+||+|++.+++.|+..+.. .+.|..+||+||||||||++|+++|+.+++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 34556999999999999999988862 4567789999999999999999999988753
Q ss_pred ------------EEEEeCchhhhhhhhhhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHH
Q 009974 138 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 201 (521)
Q Consensus 138 ------------~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~ 201 (521)
++.+++++ ..+...++.+.+.+.. +...|++|||+|.| .....|.|+.
T Consensus 78 ~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l----------s~~a~naLLk 141 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML----------SGHSFNALLK 141 (509)
T ss_pred HHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhc----------CHHHHHHHHH
Confidence 33333321 1223446666655432 33469999999999 3456788998
Q ss_pred hhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHH
Q 009974 202 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGA 280 (521)
Q Consensus 202 ~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~ 280 (521)
.|+.. ...+.+|.+|+.+..+.+.+++ |+ ..++|..++.++....++..+...+.. ++..+..+++.+.| +.+
T Consensus 142 ~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR 215 (509)
T PRK14958 142 TLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVR 215 (509)
T ss_pred HHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 88853 4457777777888888888877 77 578899999999988888888776554 34447778887765 889
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009974 281 DLANLVNIAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 281 dl~~lv~~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
++.+++..+... +...||.+++...+
T Consensus 216 ~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 216 DALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred HHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 999998776432 45678888876543
No 63
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=5.6e-17 Score=175.68 Aligned_cols=202 Identities=21% Similarity=0.336 Sum_probs=148.7
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC--------------
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------------- 137 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~-------------- 137 (521)
.+.+|+||+|++.+++.|.+.+.. .+.+..+||+||+|||||++|+++|+.+++.
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 446999999999999988887762 3466678999999999999999999998763
Q ss_pred ----------EEEEeCchhhhhhhhhhhHHHHHHHHHHH----hcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhh
Q 009974 138 ----------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEM 203 (521)
Q Consensus 138 ----------~~~i~~~~~~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l 203 (521)
++.++... ..+...++.+.+.+. .+...|+||||+|.| .....|.||..|
T Consensus 80 ~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L----------s~~a~NALLKtL 143 (647)
T PRK07994 80 REIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML----------SRHSFNALLKTL 143 (647)
T ss_pred HHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC----------CHHHHHHHHHHH
Confidence 22222211 012344555555443 234569999999999 356788999999
Q ss_pred hcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHH
Q 009974 204 DGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADL 282 (521)
Q Consensus 204 ~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl 282 (521)
+. ....+++|.+|+.+..|.+.+++ |+ ..+.|..++.++....+++.+...++. ++..+..++..+.| +.++.
T Consensus 144 EE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R~A 217 (647)
T PRK07994 144 EE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMRDA 217 (647)
T ss_pred Hc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 84 45567777788889999989888 86 799999999999999999988765543 33446778877765 88888
Q ss_pred HHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009974 283 ANLVNIAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 283 ~~lv~~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
.+++.++... +...|+.+++...+
T Consensus 218 l~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 218 LSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred HHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 8888765432 34557776665543
No 64
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=4e-17 Score=174.45 Aligned_cols=203 Identities=20% Similarity=0.277 Sum_probs=150.3
Q ss_pred CCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------------
Q 009974 71 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------- 137 (521)
Q Consensus 71 ~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~------------- 137 (521)
..+.+|+||+|++.+++.|...+. ..+.++.+||+||||||||++|+++|+.+++.
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 445699999999999999988876 24566789999999999999999999998762
Q ss_pred -----------EEEEeCchhhhhhhhhhhHHHHHHHHHHH----hcCCcEEEEccccccccCCcCCCcccHHHHHHHHHh
Q 009974 138 -----------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 202 (521)
Q Consensus 138 -----------~~~i~~~~~~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~ 202 (521)
++.+++++- .+...++.+...+. .++..|+||||+|.| .....+.|+..
T Consensus 78 C~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L----------S~~A~NALLKt 141 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML----------STHSFNALLKT 141 (702)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc----------CHHHHHHHHHH
Confidence 233333211 12345666655543 234569999999999 33467788888
Q ss_pred hhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHH
Q 009974 203 MDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGAD 281 (521)
Q Consensus 203 l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~d 281 (521)
++. ....+.+|.+|+.+..+.+.+++ |+ .++.|.+++.++..+.++..+...+.. ++..+..+++.+.| +.++
T Consensus 142 LEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLRd 215 (702)
T PRK14960 142 LEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLRD 215 (702)
T ss_pred Hhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 885 34556777778888888888876 77 588999999999999999998776554 34447778887765 8888
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009974 282 LANLVNIAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 282 l~~lv~~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
+.+++..+... +...|+.+++...+
T Consensus 216 ALnLLDQaIay----g~g~IT~edV~~lL 240 (702)
T PRK14960 216 ALSLTDQAIAY----GQGAVHHQDVKEML 240 (702)
T ss_pred HHHHHHHHHHh----cCCCcCHHHHHHHh
Confidence 88888765432 45679988886643
No 65
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.75 E-value=3.3e-17 Score=181.60 Aligned_cols=223 Identities=19% Similarity=0.270 Sum_probs=157.6
Q ss_pred cCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEEe
Q 009974 73 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYRA 142 (521)
Q Consensus 73 ~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~----------~~~~~~i~ 142 (521)
.-.++.++|.++..+++.+++.. +.+.++||+||||||||++|+++|... +..++.++
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 34688999999976666665542 123478999999999999999999864 44555655
Q ss_pred Cchhh--hhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCC
Q 009974 143 GSEFE--EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 220 (521)
Q Consensus 143 ~~~~~--~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~ 220 (521)
...+. ..|.|..+.+++.+|..+....++||||||+|.+.+......+ .....+.|...+ .+..+.+|++||.
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g-~~d~~nlLkp~L----~~g~i~vIgATt~ 324 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG-QVDAANLIKPLL----SSGKIRVIGSTTY 324 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc-HHHHHHHHHHHH----hCCCeEEEecCCh
Confidence 55554 4578888999999999988888899999999999766532111 122222222222 3677999999998
Q ss_pred CC-----CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCccc-----HHHHHhcC-----CCCCHHHHHHH
Q 009974 221 PD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVD-----VKAIARGT-----PGFNGADLANL 285 (521)
Q Consensus 221 ~~-----~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~-----l~~la~~~-----~g~s~~dl~~l 285 (521)
++ ..|++|.| ||+ .|.++.|+.+++..|++.+........++. +...+..+ ..+-|.....+
T Consensus 325 ~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidl 401 (758)
T PRK11034 325 QEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDV 401 (758)
T ss_pred HHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHH
Confidence 75 57999999 996 799999999999999998765543333333 33322222 23456688888
Q ss_pred HHHHHHHHHH----hCCCccCHHHHHHHHHHHhc
Q 009974 286 VNIAAIKAAV----DGGEKLTATELEFAKDRILM 315 (521)
Q Consensus 286 v~~A~~~a~~----~~~~~it~~~~~~a~~~~~~ 315 (521)
+++|+..... .....|+.+|+.+++.+...
T Consensus 402 ldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tg 435 (758)
T PRK11034 402 IDEAGARARLMPVSKRKKTVNVADIESVVARIAR 435 (758)
T ss_pred HHHHHHhhccCcccccccccChhhHHHHHHHHhC
Confidence 8888754422 23456899999998887653
No 66
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=8.8e-17 Score=173.21 Aligned_cols=217 Identities=44% Similarity=0.634 Sum_probs=193.3
Q ss_pred cCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEc
Q 009974 97 KNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFID 176 (521)
Q Consensus 97 ~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~ID 176 (521)
..+..+...+..+|++++++||||||||+++++++.+ +..+..+++......+.|......+.+|..+....|+++++|
T Consensus 5 ~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d 83 (494)
T COG0464 5 KEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFID 83 (494)
T ss_pred cCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeec
Confidence 4456677788999999999999999999999999999 766688899999999999999999999999999999999999
Q ss_pred cccccccCCcC-CCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHH
Q 009974 177 EIDAVGSTRKQ-WEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELY 255 (521)
Q Consensus 177 EiD~l~~~~~~-~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~ 255 (521)
|+|.+.+.+.. ..........+++..+++..... +++++.+|++..++++++++|||++.+.+..|+...+.+|+..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~ 162 (494)
T COG0464 84 EIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIH 162 (494)
T ss_pred hhhhcccCccccccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHH
Confidence 99999888776 23345678889999999888444 88999999999999999999999999999999999999999999
Q ss_pred hccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC------CCccCHHHHHHHHHHHhc
Q 009974 256 LQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG------GEKLTATELEFAKDRILM 315 (521)
Q Consensus 256 l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~------~~~it~~~~~~a~~~~~~ 315 (521)
........+.+...++..+.|++++++..++..+...+.++. ...++.+++.++++++.+
T Consensus 163 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 163 TRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 888777778899999999999999999999999988888775 345788999999998754
No 67
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.74 E-value=1.9e-16 Score=166.49 Aligned_cols=200 Identities=30% Similarity=0.398 Sum_probs=143.6
Q ss_pred CcCCcccccCcHHHHHH---HHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 72 NVKTFKDVKGCDDAKQE---LVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~---L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
.+.+|+|++|++.+... |.+++.. . .+.+++|+||||||||++|+++|+..+.+|+.+++....
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~~-----------~-~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~- 73 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIEA-----------G-RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG- 73 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHHc-----------C-CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc-
Confidence 34689999999998666 6666531 1 233799999999999999999999999999999876432
Q ss_pred hhhhhhhHHHHHHHHHHH----hcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecC--CCC
Q 009974 149 MFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN--LPD 222 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn--~~~ 222 (521)
...++.+++.+. .+...||||||+|.+. ....+.|+..++ ...+++|++|+ ...
T Consensus 74 ------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~----------~~~q~~LL~~le----~~~iilI~att~n~~~ 133 (413)
T PRK13342 74 ------VKDLREVIEEARQRRSAGRRTILFIDEIHRFN----------KAQQDALLPHVE----DGTITLIGATTENPSF 133 (413)
T ss_pred ------HHHHHHHHHHHHHhhhcCCceEEEEechhhhC----------HHHHHHHHHHhh----cCcEEEEEeCCCChhh
Confidence 233455555543 2356799999999983 233455666665 24566676543 334
Q ss_pred CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccC--CC--CCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 009974 223 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK--PL--ADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGG 298 (521)
Q Consensus 223 ~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~--~~--~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~ 298 (521)
.+++++++ |+ ..+.+++|+.++...+++..+... +. .++..+..+++.+.| +++.+.++++.+... .
T Consensus 134 ~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~~-----~ 204 (413)
T PRK13342 134 EVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAALG-----V 204 (413)
T ss_pred hccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHc-----c
Confidence 78899998 88 688999999999999999887542 11 223346677777744 677777777765533 5
Q ss_pred CccCHHHHHHHHHHH
Q 009974 299 EKLTATELEFAKDRI 313 (521)
Q Consensus 299 ~~it~~~~~~a~~~~ 313 (521)
..|+.+++..++...
T Consensus 205 ~~It~~~v~~~~~~~ 219 (413)
T PRK13342 205 DSITLELLEEALQKR 219 (413)
T ss_pred CCCCHHHHHHHHhhh
Confidence 679999999888764
No 68
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=6.6e-17 Score=174.32 Aligned_cols=211 Identities=21% Similarity=0.316 Sum_probs=151.9
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE--EeCc---
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY--RAGS--- 144 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~--i~~~--- 144 (521)
+..+.+|+||+|++.+++.|+..+. ..+.++++||+||+|||||++|+++|+.++++-.. ..|.
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~-----------~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALD-----------EGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 3455699999999999999998876 24567789999999999999999999987653110 0010
Q ss_pred -----------hhhh--hhhhhhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc
Q 009974 145 -----------EFEE--MFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 207 (521)
Q Consensus 145 -----------~~~~--~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~ 207 (521)
++.. .....+...++.++..+.. +...|+||||+|.+ .....+.|+..|+.
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L----------s~~A~NALLKtLEE-- 145 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML----------SKSAFNAMLKTLEE-- 145 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc----------CHHHHHHHHHHHHh--
Confidence 0000 0011233456777665432 33469999999988 24567788888885
Q ss_pred cCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHH
Q 009974 208 QNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLV 286 (521)
Q Consensus 208 ~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv 286 (521)
....+.+|.+|+.+..+.+.+++ |+ ..+.|+.++.++....++..+...++. ++..+..|++.+.| +.+++.+++
T Consensus 146 Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slRdAlnLL 221 (709)
T PRK08691 146 PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMRDALSLL 221 (709)
T ss_pred CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHHHHHHHH
Confidence 34556777788888888888876 77 578888999999999999999876654 33447788887765 899999998
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHHH
Q 009974 287 NIAAIKAAVDGGEKLTATELEFAKD 311 (521)
Q Consensus 287 ~~A~~~a~~~~~~~it~~~~~~a~~ 311 (521)
+.+... +...|+.+++...+.
T Consensus 222 Dqaia~----g~g~It~e~V~~lLG 242 (709)
T PRK08691 222 DQAIAL----GSGKVAENDVRQMIG 242 (709)
T ss_pred HHHHHh----cCCCcCHHHHHHHHc
Confidence 876543 345788887776543
No 69
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.73 E-value=2.2e-16 Score=165.79 Aligned_cols=191 Identities=21% Similarity=0.336 Sum_probs=135.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeCchhhhhhhhhhhH-HHHHHHHHHHhcCCcEEEEcccccccc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSEFEEMFVGVGAR-RVRSLFQAAKKKAPCIIFIDEIDAVGS 183 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~-----~~~~~~i~~~~~~~~~~g~~~~-~i~~~f~~a~~~~p~Il~IDEiD~l~~ 183 (521)
+.+++||||||||||+|++++++++ +..++++++.++...+...... .+..+....+ .+.+|+|||+|.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 4579999999999999999999876 5789999998876654433211 1222222222 356999999999854
Q ss_pred CCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCC---CCccccCCCccce--EEecCCCCHHHHHHHHHHHhcc
Q 009974 184 TRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI---LDPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQD 258 (521)
Q Consensus 184 ~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~---ld~al~r~gRf~~--~i~~~~P~~~~r~~il~~~l~~ 258 (521)
+. .....++..++....+...+||+++..|.. +++.+.+ ||.. .+.+++|+.++|..|++..+..
T Consensus 214 ~~--------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 214 KE--------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred CH--------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 32 122334444443333444566666666654 5677877 8864 7999999999999999999977
Q ss_pred CCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 009974 259 KPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRIL 314 (521)
Q Consensus 259 ~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~~ 314 (521)
.++. ++..+..+|....+ +.+++..+++.....+...+ +.||.+.+.+++....
T Consensus 284 ~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~~~ 338 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLTG-KPITLELAKEALKDLL 338 (405)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhc
Confidence 6554 34447788887764 89999999998877765544 7799999999988654
No 70
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.4e-16 Score=174.93 Aligned_cols=208 Identities=19% Similarity=0.245 Sum_probs=147.2
Q ss_pred CCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEE-------EE-e
Q 009974 71 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF-------YR-A 142 (521)
Q Consensus 71 ~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~-------~i-~ 142 (521)
..+.+|++|+|++.+++.|++++. ..+.|..+||+||||||||++|+++|+.+++.-. .+ +
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~-----------~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALT-----------QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------hCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 345699999999999999888775 2356767899999999999999999999876411 00 0
Q ss_pred Cchhhhh-------hh---hhhhHHHHHHHHHHH----hcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCcc
Q 009974 143 GSEFEEM-------FV---GVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ 208 (521)
Q Consensus 143 ~~~~~~~-------~~---g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~ 208 (521)
|..+... +. ..+...++.+...+. .+...|+||||+|.| ....++.||..|+. .
T Consensus 79 C~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L----------T~eAqNALLKtLEE--P 146 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML----------SRSSFNALLKTLEE--P 146 (944)
T ss_pred HHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc----------CHHHHHHHHHHHhc--c
Confidence 1111000 00 012234555554443 233469999999999 45678899999985 4
Q ss_pred CCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHH
Q 009974 209 NEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVN 287 (521)
Q Consensus 209 ~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~ 287 (521)
...+++|.+|+.+..|.+.+++ |+ .++.|++++.++....+++.+...++. .+..+..|+..+.| ++|++.+++.
T Consensus 147 P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~ALnLLd 222 (944)
T PRK14949 147 PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDALSLTD 222 (944)
T ss_pred CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 4567777778888889888887 77 689999999999999999988765443 33347778887765 7889888887
Q ss_pred HHHHHHHHhCCCccCHHHHHHH
Q 009974 288 IAAIKAAVDGGEKLTATELEFA 309 (521)
Q Consensus 288 ~A~~~a~~~~~~~it~~~~~~a 309 (521)
++... +...++.+.+...
T Consensus 223 Qala~----~~~~It~~~V~~l 240 (944)
T PRK14949 223 QAIAF----GGGQVMLTQVQTM 240 (944)
T ss_pred HHHHh----cCCcccHHHHHHH
Confidence 76622 3456776665543
No 71
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=1.2e-16 Score=169.66 Aligned_cols=213 Identities=20% Similarity=0.269 Sum_probs=154.8
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEE----------
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF---------- 139 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~---------- 139 (521)
...+.+|+|++|++.+.+.|+..+. ..+.|.++||+||||||||++|+++|+.+++.--
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~-----------~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTIL-----------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 4456699999999999988887664 2456779999999999999999999998865311
Q ss_pred --EEeCchhhhh----------hhhhhhHHHHHHHHHHHhc----CCcEEEEccccccccCCcCCCcccHHHHHHHHHhh
Q 009974 140 --YRAGSEFEEM----------FVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEM 203 (521)
Q Consensus 140 --~i~~~~~~~~----------~~g~~~~~i~~~f~~a~~~----~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l 203 (521)
..+|..+... -...+...++.+++.+... ...|++|||+|.+ ....++.|+..+
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L----------s~~a~naLLk~L 152 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHML----------SKGAFNALLKTL 152 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhc----------CHHHHHHHHHHH
Confidence 0011111100 0112345677777776532 3469999999998 245677888888
Q ss_pred hcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHH
Q 009974 204 DGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADL 282 (521)
Q Consensus 204 ~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl 282 (521)
+. +...+++|.+|+.++.+++.+++ |+ ..+.|..++.++...+++..++..+.. ++..+..++..+.| +.+++
T Consensus 153 Ee--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR~a 226 (507)
T PRK06645 153 EE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SARDA 226 (507)
T ss_pred hh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 84 45567777778888889998887 77 578999999999999999999876654 33447788888776 89999
Q ss_pred HHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009974 283 ANLVNIAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 283 ~~lv~~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
.++++.+...+.. ....||.+++...+
T Consensus 227 l~~Ldkai~~~~~-~~~~It~~~V~~ll 253 (507)
T PRK06645 227 VSILDQAASMSAK-SDNIISPQVINQML 253 (507)
T ss_pred HHHHHHHHHhhcc-CCCCcCHHHHHHHH
Confidence 9999887655421 23478988887654
No 72
>PLN03025 replication factor C subunit; Provisional
Probab=99.73 E-value=1e-16 Score=162.89 Aligned_cols=202 Identities=18% Similarity=0.187 Sum_probs=136.3
Q ss_pred CCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-----CEEEEeC
Q 009974 69 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-----PFFYRAG 143 (521)
Q Consensus 69 ~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~-----~~~~i~~ 143 (521)
....+.+|+|++|++++.+.|+.++.. ...| ++|||||||||||++|+++|+++.. .++.++.
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~-----------~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARD-----------GNMP-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhc-----------CCCc-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 345667999999999999888877651 2234 6999999999999999999998733 3566666
Q ss_pred chhhhhhhhhhhHHHHHHHHH---HH----hcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEe
Q 009974 144 SEFEEMFVGVGARRVRSLFQA---AK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMA 216 (521)
Q Consensus 144 ~~~~~~~~g~~~~~i~~~f~~---a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ 216 (521)
++..+. ..++..... .. .+.+.|++|||+|.+. ....+.|+..++... ....+|.
T Consensus 73 sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt----------~~aq~aL~~~lE~~~--~~t~~il 134 (319)
T PLN03025 73 SDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT----------SGAQQALRRTMEIYS--NTTRFAL 134 (319)
T ss_pred cccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcC----------HHHHHHHHHHHhccc--CCceEEE
Confidence 654221 122322221 11 1235799999999993 233456666666433 2345666
Q ss_pred ecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 009974 217 ATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAV 295 (521)
Q Consensus 217 ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~ 295 (521)
+||.++.+.+++++ |+ ..+.|++|+.++....++..++..++. ++..+..++....| +.+.+.+.++ ...
T Consensus 135 ~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq---~~~-- 205 (319)
T PLN03025 135 ACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQ---ATH-- 205 (319)
T ss_pred EeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH---HHH--
Confidence 78888888888887 76 589999999999999999988776544 34457777776543 4444444443 211
Q ss_pred hCCCccCHHHHHHH
Q 009974 296 DGGEKLTATELEFA 309 (521)
Q Consensus 296 ~~~~~it~~~~~~a 309 (521)
.+...||.+++...
T Consensus 206 ~~~~~i~~~~v~~~ 219 (319)
T PLN03025 206 SGFGFVNQENVFKV 219 (319)
T ss_pred hcCCCCCHHHHHHH
Confidence 23457888887643
No 73
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.6e-16 Score=167.50 Aligned_cols=203 Identities=19% Similarity=0.230 Sum_probs=152.7
Q ss_pred CCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC--------------
Q 009974 71 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-------------- 136 (521)
Q Consensus 71 ~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~-------------- 136 (521)
..+.+|+||+|++.+++.|++.+. ..+.|+++||+||||+|||++|+.+|+.+++
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~-----------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFT-----------LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 344699999999999998887665 2456789999999999999999999997643
Q ss_pred ----------CEEEEeCchhhhhhhhhhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHh
Q 009974 137 ----------PFFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 202 (521)
Q Consensus 137 ----------~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~ 202 (521)
.++.+++++- .+...++.+.+.+.. ....|++|||+|.+ ....+|.|+..
T Consensus 76 C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L----------s~~A~NaLLK~ 139 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHML----------SNSAFNALLKT 139 (491)
T ss_pred HHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhC----------CHHHHHHHHHH
Confidence 2344444321 234556777666543 23469999999998 34577889999
Q ss_pred hhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHH
Q 009974 203 MDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGAD 281 (521)
Q Consensus 203 l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~d 281 (521)
++. +...+++|.+|+.++.+.+.+++ |+ ..+.|..++.++....++..+...+.. ++..+..+++.+.| +.++
T Consensus 140 LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR~ 213 (491)
T PRK14964 140 LEE--PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMRN 213 (491)
T ss_pred HhC--CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 985 34567777778888889888887 77 578999999999999999988776554 34457778888765 8899
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009974 282 LANLVNIAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 282 l~~lv~~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
+.++++.+...+ .+.||.+++...+
T Consensus 214 alslLdqli~y~----~~~It~e~V~~ll 238 (491)
T PRK14964 214 ALFLLEQAAIYS----NNKISEKSVRDLL 238 (491)
T ss_pred HHHHHHHHHHhc----CCCCCHHHHHHHH
Confidence 888888766543 3579988887653
No 74
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.73 E-value=2.5e-16 Score=166.11 Aligned_cols=225 Identities=17% Similarity=0.224 Sum_probs=149.1
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeCc
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGS 144 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~-----~~~~~~i~~~ 144 (521)
-.+..+|++++-.+.-............++ +. +++++||||||+|||+|++++++++ +..++++++.
T Consensus 98 l~~~~tFdnFv~g~~n~~a~~~~~~~~~~~------~~--~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~ 169 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSFAYHAALEVAKNP------GR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_pred CCCCCcccccccCCchHHHHHHHHHHHhCc------CC--CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 345568999883333222222232222222 11 3469999999999999999999975 4678899998
Q ss_pred hhhhhhhhhhh-HHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCC
Q 009974 145 EFEEMFVGVGA-RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 223 (521)
Q Consensus 145 ~~~~~~~g~~~-~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ 223 (521)
+|...+..... ..+.. |.......+.+|+|||++.+.+.. .....++..++........+|+++.+.|..
T Consensus 170 ~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~--------~~q~elf~~~n~l~~~~k~iIitsd~~p~~ 240 (440)
T PRK14088 170 KFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT--------GVQTELFHTFNELHDSGKQIVICSDREPQK 240 (440)
T ss_pred HHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH--------HHHHHHHHHHHHHHHcCCeEEEECCCCHHH
Confidence 87766543221 12222 332222357899999999885431 122334444444334445566666666654
Q ss_pred ---CCccccCCCccc--eEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC
Q 009974 224 ---LDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG 297 (521)
Q Consensus 224 ---ld~al~r~gRf~--~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~ 297 (521)
+.+.+.+ ||. ..+.+++|+.+.|..|++..+...++. ++..+..|+....| +.++|..+++.....+...+
T Consensus 241 l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~~ 317 (440)
T PRK14088 241 LSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTG 317 (440)
T ss_pred HHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHhC
Confidence 4566776 775 478899999999999999998754443 34447788888775 89999999988766665554
Q ss_pred CCccCHHHHHHHHHHHhc
Q 009974 298 GEKLTATELEFAKDRILM 315 (521)
Q Consensus 298 ~~~it~~~~~~a~~~~~~ 315 (521)
..||.+.+.+++...+.
T Consensus 318 -~~it~~~a~~~L~~~~~ 334 (440)
T PRK14088 318 -EEVDLKEAILLLKDFIK 334 (440)
T ss_pred -CCCCHHHHHHHHHHHhc
Confidence 67999999999987653
No 75
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.72 E-value=2.7e-16 Score=167.17 Aligned_cols=190 Identities=20% Similarity=0.320 Sum_probs=137.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeCchhhhhhhhhhhH-HHHHHHHHHHhcCCcEEEEccccccccC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSEFEEMFVGVGAR-RVRSLFQAAKKKAPCIIFIDEIDAVGST 184 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~-----~~~~~~i~~~~~~~~~~g~~~~-~i~~~f~~a~~~~p~Il~IDEiD~l~~~ 184 (521)
++++||||||||||+|++++++++ +..++++++.++...+...... ....+.+..+ .+.+|+|||+|.+.++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCC
Confidence 479999999999999999999987 5678999998887665443322 1222222222 4679999999998543
Q ss_pred CcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCC---CCccccCCCccc--eEEecCCCCHHHHHHHHHHHhccC
Q 009974 185 RKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI---LDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDK 259 (521)
Q Consensus 185 ~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~---ld~al~r~gRf~--~~i~~~~P~~~~r~~il~~~l~~~ 259 (521)
. .....++..++....+...+||+++..|.. +++.+.+ ||. ..+.+++|+.++|..|++..+...
T Consensus 227 ~--------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~ 296 (450)
T PRK00149 227 E--------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEE 296 (450)
T ss_pred H--------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHc
Confidence 2 122344444444333444566666666654 6688887 996 489999999999999999999765
Q ss_pred CCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 009974 260 PLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRIL 314 (521)
Q Consensus 260 ~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~~ 314 (521)
++. ++..++.++..+.| +.+++..+++.....+...+ +.||.+.+++++....
T Consensus 297 ~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 297 GIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLTG-KPITLELAKEALKDLL 350 (450)
T ss_pred CCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhh
Confidence 443 34457888888775 89999999998877765554 6799999999998764
No 76
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=2.7e-16 Score=170.09 Aligned_cols=203 Identities=19% Similarity=0.265 Sum_probs=148.6
Q ss_pred CCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------------
Q 009974 71 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------- 137 (521)
Q Consensus 71 ~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~------------- 137 (521)
..+.+|+||+|++.+++.|++.+. ..+.|..+||+||+|||||++|+++|+.+++.
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~-----------~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALT-----------QQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 344699999999999999988876 24567788999999999999999999988752
Q ss_pred ----------------EEEEeCchhhhhhhhhhhHHHHHHHHHHHhc----CCcEEEEccccccccCCcCCCcccHHHHH
Q 009974 138 ----------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLH 197 (521)
Q Consensus 138 ----------------~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~----~p~Il~IDEiD~l~~~~~~~~~~~~~~l~ 197 (521)
++.++..+ ..+...++++.+.+... ...|++|||+|.| .....|
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L----------s~~a~N 142 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML----------TNTAFN 142 (618)
T ss_pred CccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC----------CHHHHH
Confidence 12222111 11234566666665422 2359999999999 345678
Q ss_pred HHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHhcCCC
Q 009974 198 QLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-DVDVKAIARGTPG 276 (521)
Q Consensus 198 ~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~-~~~l~~la~~~~g 276 (521)
.|+..++. ....+.+|.+|+.+..+.+.+++ |+ .++.|..++.++....++..+...++.. +..+..|++.+.|
T Consensus 143 aLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G 217 (618)
T PRK14951 143 AMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG 217 (618)
T ss_pred HHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 88888885 34566777777888888888877 77 6899999999999999999887766543 3347788887775
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009974 277 FNGADLANLVNIAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 277 ~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
+.+++.+++.++... +...||.+++...+
T Consensus 218 -slR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 218 -SMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred -CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 888888887665543 45678887776543
No 77
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.71 E-value=5.7e-16 Score=160.64 Aligned_cols=219 Identities=23% Similarity=0.329 Sum_probs=149.8
Q ss_pred ccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC---------CCEEEEeCchhh
Q 009974 77 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG---------VPFFYRAGSEFE 147 (521)
Q Consensus 77 ~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~---------~~~~~i~~~~~~ 147 (521)
++++|.++..+.|...+..... ...|.+++|+||||||||++++++++++. .++++++|....
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence 3679999988888877764221 23345899999999999999999998652 578888886542
Q ss_pred hh----------hh--hh--------hhHHHHHHHHHHH-hcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhc-
Q 009974 148 EM----------FV--GV--------GARRVRSLFQAAK-KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG- 205 (521)
Q Consensus 148 ~~----------~~--g~--------~~~~i~~~f~~a~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~- 205 (521)
.. .. +. ..+....++.... ...+.||+|||+|.+... .+..+..++...+.
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-------~~~~L~~l~~~~~~~ 159 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-------DDDLLYQLSRARSNG 159 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-------CcHHHHhHhcccccc
Confidence 21 10 10 0122344444443 245679999999999622 12355566554221
Q ss_pred CccCCceEEEeecCCCC---CCCccccCCCccc-eEEecCCCCHHHHHHHHHHHhccC---CCCCcccHHH---HHhcCC
Q 009974 206 FEQNEGIILMAATNLPD---ILDPALTRPGRFD-RHIVVPNPDVRGRQEILELYLQDK---PLADDVDVKA---IARGTP 275 (521)
Q Consensus 206 ~~~~~~vivI~ttn~~~---~ld~al~r~gRf~-~~i~~~~P~~~~r~~il~~~l~~~---~~~~~~~l~~---la~~~~ 275 (521)
...+.++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++..+... ..-++..+.. ++..+.
T Consensus 160 ~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~ 237 (365)
T TIGR02928 160 DLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEH 237 (365)
T ss_pred CCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhc
Confidence 12236788999999886 57777776 775 579999999999999999988621 1112222333 333444
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 009974 276 GFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 313 (521)
Q Consensus 276 g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~ 313 (521)
| ..+.+.++|+.|...|..++...||.+|+..|.+.+
T Consensus 238 G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 238 G-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred C-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4 577777889999988888888899999999998875
No 78
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.71 E-value=2.2e-16 Score=152.17 Aligned_cols=201 Identities=22% Similarity=0.234 Sum_probs=139.0
Q ss_pred ccCCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------EEE
Q 009974 67 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------FFY 140 (521)
Q Consensus 67 ~~~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~------~~~ 140 (521)
+.....+.+|++++|++.+.+.|+..+.. ...| ++|||||||||||+.|+++|++++.| +..
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~-----------~~lp-~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLR-----------RILP-HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhh-----------cCCc-eEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 34466778999999999999999987763 2234 79999999999999999999999763 334
Q ss_pred EeCchhhhhhhhhhhHHHHHHHHHHHh------cCC----cEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCC
Q 009974 141 RAGSEFEEMFVGVGARRVRSLFQAAKK------KAP----CIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNE 210 (521)
Q Consensus 141 i~~~~~~~~~~g~~~~~i~~~f~~a~~------~~p----~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~ 210 (521)
.+.++..+.-++ ..++. -|.+... +.| .|++|||.|.| .....+.|...|+.+. .
T Consensus 94 lnaSderGisvv--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm----------tsdaq~aLrr~mE~~s--~ 158 (346)
T KOG0989|consen 94 LNASDERGISVV--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSM----------TSDAQAALRRTMEDFS--R 158 (346)
T ss_pred hcccccccccch--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhh----------hHHHHHHHHHHHhccc--c
Confidence 455554433211 11111 2333221 112 59999999999 4567778888898643 4
Q ss_pred ceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHhcCCCCCHHHHHHHHHHH
Q 009974 211 GIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDV-DVKAIARGTPGFNGADLANLVNIA 289 (521)
Q Consensus 211 ~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~-~l~~la~~~~g~s~~dl~~lv~~A 289 (521)
.+++|..||+.+.|...+.+ |.. .+.|+..+.+.....|+.++.+.++.-+. .+..++....| +-++....++.+
T Consensus 159 ~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~Ait~Lqsl 234 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRAITTLQSL 234 (346)
T ss_pred ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHh
Confidence 56777789999999988887 774 67788888888888888888877766443 36777775544 444444444433
Q ss_pred HHHHHHhCCCccCH
Q 009974 290 AIKAAVDGGEKLTA 303 (521)
Q Consensus 290 ~~~a~~~~~~~it~ 303 (521)
.. .++.||.
T Consensus 235 s~-----~gk~It~ 243 (346)
T KOG0989|consen 235 SL-----LGKRITT 243 (346)
T ss_pred hc-----cCcccch
Confidence 32 5567763
No 79
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=4.5e-16 Score=166.00 Aligned_cols=202 Identities=22% Similarity=0.286 Sum_probs=146.8
Q ss_pred CCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------------
Q 009974 71 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------- 137 (521)
Q Consensus 71 ~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~------------- 137 (521)
..+.+|+||+|++.+++.|+.++.. .+.|..+|||||||||||++|+++|+.+.+.
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 3456999999999999999988762 3466678999999999999999999987541
Q ss_pred ----------EEEEeCchhhhhhhhhhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhh
Q 009974 138 ----------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEM 203 (521)
Q Consensus 138 ----------~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l 203 (521)
++.++.++ ..+...++.+...+.. ..+.||+|||+|.+ ....++.|+..+
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l----------s~~a~naLLk~L 140 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM----------SKSAFNALLKTL 140 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc----------CHHHHHHHHHHH
Confidence 33333321 1123345555444332 34579999999987 345678888888
Q ss_pred hcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHH
Q 009974 204 DGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADL 282 (521)
Q Consensus 204 ~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl 282 (521)
+. ....+++|.+||.+..+.+.+.+ |+ ..+.|.+|+.++....++..+...+.. ++..+..++..+.| +.+++
T Consensus 141 Ee--p~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~a 214 (504)
T PRK14963 141 EE--PPEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMRDA 214 (504)
T ss_pred Hh--CCCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 85 34456777788888999998887 77 479999999999999999998776654 33446778877765 67777
Q ss_pred HHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009974 283 ANLVNIAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 283 ~~lv~~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
.+.++.+.. . ...||.+++..++
T Consensus 215 ln~Lekl~~----~-~~~It~~~V~~~l 237 (504)
T PRK14963 215 ESLLERLLA----L-GTPVTRKQVEEAL 237 (504)
T ss_pred HHHHHHHHh----c-CCCCCHHHHHHHH
Confidence 777765532 1 3478988877654
No 80
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=4e-16 Score=167.67 Aligned_cols=204 Identities=21% Similarity=0.285 Sum_probs=145.3
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 137 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~------------ 137 (521)
...+.+|+||+|++.+++.|++.+.. .+.+..+||+||||||||++|+++|+.+++.
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 34556999999999999999888762 3445689999999999999999999988753
Q ss_pred ------------EEEEeCchhhhhhhhhhhHHHHHHHHHHH----hcCCcEEEEccccccccCCcCCCcccHHHHHHHHH
Q 009974 138 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 201 (521)
Q Consensus 138 ------------~~~i~~~~~~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~ 201 (521)
++.+++.. ..+...++.+.+.+. .+...||||||+|.| ....++.|+.
T Consensus 78 sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L----------t~~a~naLLk 141 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML----------TREAFNALLK 141 (624)
T ss_pred HHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhC----------CHHHHHHHHH
Confidence 33333211 011223333322222 234569999999999 2456788888
Q ss_pred hhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHH
Q 009974 202 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGA 280 (521)
Q Consensus 202 ~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~ 280 (521)
.++. ....+++|.+||.+..+.+.+++ |+ .++.|+.++.++...+++..+...+.. ++..+..+++.+.| +.+
T Consensus 142 ~LEE--P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-dlR 215 (624)
T PRK14959 142 TLEE--PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-SVR 215 (624)
T ss_pred Hhhc--cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8885 34567888888888888888877 77 478999999999999999888766542 34446777776654 667
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009974 281 DLANLVNIAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 281 dl~~lv~~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
++.++++.+. ..+.+.||.+++..++
T Consensus 216 ~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 216 DSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred HHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 7777776542 2355689999887665
No 81
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.70 E-value=1.4e-15 Score=155.75 Aligned_cols=210 Identities=20% Similarity=0.243 Sum_probs=137.4
Q ss_pred CCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC-----CCEEEEeC
Q 009974 69 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG-----VPFFYRAG 143 (521)
Q Consensus 69 ~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~-----~~~~~i~~ 143 (521)
....+.+|++++|++++++.|..++.. ...| +++|+||||||||++|+++++++. .+++++++
T Consensus 7 ~ky~P~~~~~~~g~~~~~~~L~~~~~~-----------~~~~-~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 7 EKYRPALLEDILGQDEVVERLSRAVDS-----------PNLP-HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred HhhCCCcHHHhcCCHHHHHHHHHHHhC-----------CCCc-eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 344567899999999999998887751 1223 699999999999999999999874 45788888
Q ss_pred chhhhhh-------------hhh-------hhHHHHHHHHHHHh-----cCCcEEEEccccccccCCcCCCcccHHHHHH
Q 009974 144 SEFEEMF-------------VGV-------GARRVRSLFQAAKK-----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQ 198 (521)
Q Consensus 144 ~~~~~~~-------------~g~-------~~~~i~~~f~~a~~-----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ 198 (521)
+++.... .+. ....++.+...... ..+.+|+|||+|.+.. ...+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~----------~~~~~ 144 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE----------DAQQA 144 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH----------HHHHH
Confidence 7654221 010 01223333323222 2246999999998832 23345
Q ss_pred HHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCC
Q 009974 199 LLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGF 277 (521)
Q Consensus 199 ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~ 277 (521)
|...++..... ..+|.+++.+..+.+.+.+ |+ ..+.+++|+.++...+++..+...+.. ++..+..++..+.|
T Consensus 145 L~~~le~~~~~--~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g- 218 (337)
T PRK12402 145 LRRIMEQYSRT--CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG- 218 (337)
T ss_pred HHHHHHhccCC--CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 55556543322 3445556666677777776 66 578999999999999999988766544 44457778876643
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009974 278 NGADLANLVNIAAIKAAVDGGEKLTATELEFAKD 311 (521)
Q Consensus 278 s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~ 311 (521)
+.+++.+.++ ..+ .+...||.+++.+++.
T Consensus 219 dlr~l~~~l~---~~~--~~~~~It~~~v~~~~~ 247 (337)
T PRK12402 219 DLRKAILTLQ---TAA--LAAGEITMEAAYEALG 247 (337)
T ss_pred CHHHHHHHHH---HHH--HcCCCCCHHHHHHHhC
Confidence 4444444443 333 2334799999877553
No 82
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=8.9e-16 Score=166.21 Aligned_cols=203 Identities=22% Similarity=0.310 Sum_probs=150.6
Q ss_pred CCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------------
Q 009974 71 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------- 137 (521)
Q Consensus 71 ~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~------------- 137 (521)
..+.+|++|+|++.+++.|++.+.. .+.++.+||+||+|||||++|+.+|+.++++
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 3456999999999999999888762 3456789999999999999999999987642
Q ss_pred -----------EEEEeCchhhhhhhhhhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHh
Q 009974 138 -----------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 202 (521)
Q Consensus 138 -----------~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~ 202 (521)
++.++++. +.+...++.+.+.+.. ....|++|||+|.| .....+.|+..
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L----------t~~a~naLLKt 142 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML----------STGAFNALLKT 142 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC----------CHHHHHHHHHH
Confidence 22222211 1234556777766553 23469999999998 34567888888
Q ss_pred hhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHH
Q 009974 203 MDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGAD 281 (521)
Q Consensus 203 l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~d 281 (521)
++. +...+++|.+|+.++.+++.+++ |+. .+.|++|+.++....++..+...++. ++..+..++....| +.++
T Consensus 143 LEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R~ 216 (559)
T PRK05563 143 LEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMRD 216 (559)
T ss_pred hcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 885 34567777778888999999887 774 68899999999999999988776654 33446777887765 8888
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009974 282 LANLVNIAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 282 l~~lv~~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
+.+++..+... +...||.+++..++
T Consensus 217 al~~Ldq~~~~----~~~~It~~~V~~vl 241 (559)
T PRK05563 217 ALSILDQAISF----GDGKVTYEDALEVT 241 (559)
T ss_pred HHHHHHHHHHh----ccCCCCHHHHHHHh
Confidence 88888776543 34578888776543
No 83
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=8.4e-16 Score=165.67 Aligned_cols=204 Identities=19% Similarity=0.219 Sum_probs=147.2
Q ss_pred CCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------------
Q 009974 71 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------- 137 (521)
Q Consensus 71 ~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~------------- 137 (521)
..+.+|+||+|++.+++.|+..+. ..+.|+.+||+||+|||||++|+++|+.+++.
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~-----------~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALD-----------AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 345699999999999999988876 24567778999999999999999999987642
Q ss_pred -------------EEEEeCchhhhhhhhhhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHH
Q 009974 138 -------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 200 (521)
Q Consensus 138 -------------~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll 200 (521)
++.++++.. .+...++++.+.+.. ....|++|||+|.| .....|.||
T Consensus 76 C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L----------t~~A~NALL 139 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV----------TTAGFNALL 139 (584)
T ss_pred HHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC----------CHHHHHHHH
Confidence 122222110 123444554444322 23459999999999 345788899
Q ss_pred HhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCH
Q 009974 201 VEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNG 279 (521)
Q Consensus 201 ~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~ 279 (521)
..|+. ....+++|.+|+.++.+.+.+++ |. .++.|..++.++..+.++.++...+.. ++..+..++.... .+.
T Consensus 140 K~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~-Gdl 213 (584)
T PRK14952 140 KIVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG-GSP 213 (584)
T ss_pred HHHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCH
Confidence 99984 45567888888888899999887 75 689999999999999999988876643 3334566666554 478
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009974 280 ADLANLVNIAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 280 ~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
+++.++++.+... .+...||.+++...+
T Consensus 214 R~aln~Ldql~~~---~~~~~It~~~v~~ll 241 (584)
T PRK14952 214 RDTLSVLDQLLAG---AADTHVTYQRALGLL 241 (584)
T ss_pred HHHHHHHHHHHhc---cCCCCcCHHHHHHHH
Confidence 8888888876433 235678888776553
No 84
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=4.8e-16 Score=167.16 Aligned_cols=203 Identities=20% Similarity=0.280 Sum_probs=147.6
Q ss_pred CCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------------
Q 009974 71 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------- 137 (521)
Q Consensus 71 ~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~------------- 137 (521)
..+.+|+||+|++.+++.|...+.. .+.++.+||+||||+|||++|+++|+.+++.
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 3446999999999999998887762 3456678999999999999999999998653
Q ss_pred -----------EEEEeCchhhhhhhhhhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHh
Q 009974 138 -----------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 202 (521)
Q Consensus 138 -----------~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~ 202 (521)
++.++++. ..+...++.+...+.. +...|++|||+|.+ .....|.|+..
T Consensus 79 C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l----------s~~a~naLLK~ 142 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML----------SKSAFNAMLKT 142 (527)
T ss_pred HHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC----------CHHHHHHHHHH
Confidence 11121110 1223456777666543 23469999999998 34567889998
Q ss_pred hhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHhcCCCCCHHH
Q 009974 203 MDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-DVDVKAIARGTPGFNGAD 281 (521)
Q Consensus 203 l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~-~~~l~~la~~~~g~s~~d 281 (521)
++. ....+++|.+|+.+..+.+.+++ |+ ..+.|+.|+.++..+.+...+...+... +..+..++..+.| +.++
T Consensus 143 LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~ 216 (527)
T PRK14969 143 LEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMRD 216 (527)
T ss_pred HhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 885 34566777777878888877776 76 6899999999999999988887655443 3346777777654 7888
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009974 282 LANLVNIAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 282 l~~lv~~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
+.++++.+... +...|+.+++...+
T Consensus 217 al~lldqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 217 ALSLLDQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred HHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 88888776543 45677777766543
No 85
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.5e-15 Score=162.40 Aligned_cols=203 Identities=19% Similarity=0.258 Sum_probs=144.3
Q ss_pred CCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC--------------
Q 009974 71 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-------------- 136 (521)
Q Consensus 71 ~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~-------------- 136 (521)
..+.+|+|++|++.+++.|...+.. .+.+..+||+||||||||++|+.+|+.+++
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 3446999999999999988887752 345667999999999999999999998764
Q ss_pred ----------CEEEEeCchhhhhhhhhhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHh
Q 009974 137 ----------PFFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 202 (521)
Q Consensus 137 ----------~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~ 202 (521)
.++.++... ..+...++.+.+.+.. +...|++|||+|.+ .....+.|+..
T Consensus 79 C~~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l----------s~~a~naLLK~ 142 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHML----------SKQSFNALLKT 142 (546)
T ss_pred HHHHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc----------cHHHHHHHHHH
Confidence 122222211 0122344555544432 34569999999998 34577888888
Q ss_pred hhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHH
Q 009974 203 MDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGAD 281 (521)
Q Consensus 203 l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~d 281 (521)
++. ....+++|.+|+.+..+.+.+++ |+ ..++|.+++.++....++..++..+.. ++..+..++..+. .+.++
T Consensus 143 LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~-GdlR~ 216 (546)
T PRK14957 143 LEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK-GSLRD 216 (546)
T ss_pred Hhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHH
Confidence 885 34556667677778888877877 77 689999999999999999888765544 3444677777765 47888
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009974 282 LANLVNIAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 282 l~~lv~~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
+.++++.+.... ...|+.+++++++
T Consensus 217 alnlLek~i~~~----~~~It~~~V~~~l 241 (546)
T PRK14957 217 ALSLLDQAISFC----GGELKQAQIKQML 241 (546)
T ss_pred HHHHHHHHHHhc----cCCCCHHHHHHHH
Confidence 888887665432 2568887777643
No 86
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6.9e-16 Score=163.43 Aligned_cols=164 Identities=27% Similarity=0.370 Sum_probs=129.5
Q ss_pred ccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh---------
Q 009974 77 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE--------- 147 (521)
Q Consensus 77 ~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~--------- 147 (521)
+|-.|.+++|+++.+.+.-.+.... .+-| -++|+||||+|||+|++.||+.++.+|+.++...+.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~-----~kGp-ILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKK-----LKGP-ILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhcc-----CCCc-EEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 3568999999999997765332221 1122 688999999999999999999999999999876553
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhc-----C--------ccCCceEE
Q 009974 148 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG-----F--------EQNEGIIL 214 (521)
Q Consensus 148 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~-----~--------~~~~~viv 214 (521)
..|+|....++-+-..+|....| +++|||||.++.+... .... .||..+|. | .+-+.|+|
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rG---DPaS---ALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRG---DPAS---ALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCC---ChHH---HHHhhcCHhhcCchhhccccCccchhheEE
Confidence 34889988888888999988888 8999999999765433 2223 34444431 1 12356999
Q ss_pred EeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHh
Q 009974 215 MAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYL 256 (521)
Q Consensus 215 I~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l 256 (521)
|+|+|..+.++.+|+. |+ .+|.+.-++.++..+|.+.|+
T Consensus 470 iaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc
Confidence 9999999999999998 88 599999999999999999997
No 87
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.68 E-value=1.4e-15 Score=167.87 Aligned_cols=210 Identities=23% Similarity=0.257 Sum_probs=139.9
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhh
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 149 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 149 (521)
...+.+|+|++|++.+......+...+.. .+. .+++||||||||||++|+++|+..+.+|+.+++....
T Consensus 21 k~RP~tldd~vGQe~ii~~~~~L~~~i~~--------~~~-~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~-- 89 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGEGRLLRRAIKA--------DRV-GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG-- 89 (725)
T ss_pred hcCCCcHHHhcCcHHHhhhhHHHHHHHhc--------CCC-ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh--
Confidence 34457999999999987542222222221 122 3799999999999999999999999999988875321
Q ss_pred hhhhhhHHHHHHHHHHH-----hcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCC--CC
Q 009974 150 FVGVGARRVRSLFQAAK-----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL--PD 222 (521)
Q Consensus 150 ~~g~~~~~i~~~f~~a~-----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~--~~ 222 (521)
.+.++..+..+. .+...+|||||+|.+.. ...+.|+..++ +..+++|++|+. ..
T Consensus 90 -----i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~----------~qQdaLL~~lE----~g~IiLI~aTTenp~~ 150 (725)
T PRK13341 90 -----VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK----------AQQDALLPWVE----NGTITLIGATTENPYF 150 (725)
T ss_pred -----hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH----------HHHHHHHHHhc----CceEEEEEecCCChHh
Confidence 122333333331 13456999999999832 23445665555 345677776543 24
Q ss_pred CCCccccCCCccceEEecCCCCHHHHHHHHHHHhcc-------CCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 009974 223 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD-------KPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAA 294 (521)
Q Consensus 223 ~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~-------~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~ 294 (521)
.+++++++ |+ ..+.+++++.+++..+++.++.. ..+. ++..+..+++...| +.+++.++++.+...+.
T Consensus 151 ~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~~~~~ 226 (725)
T PRK13341 151 EVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAVESTP 226 (725)
T ss_pred hhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcc
Confidence 68888887 65 57899999999999999998862 2222 34447788887754 67888888877664332
Q ss_pred HhCC--CccCHHHHHHHHHHH
Q 009974 295 VDGG--EKLTATELEFAKDRI 313 (521)
Q Consensus 295 ~~~~--~~it~~~~~~a~~~~ 313 (521)
..+. ..||.+++++++.+.
T Consensus 227 ~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 227 PDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred cCCCCceeccHHHHHHHHHHh
Confidence 2221 237888888877653
No 88
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.68 E-value=1e-15 Score=172.90 Aligned_cols=218 Identities=22% Similarity=0.257 Sum_probs=151.4
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEE
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYR 141 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~----------~~~~~~i 141 (521)
.+.++++++|+++. +++++..+.... ..+++|+||||||||++|+.+|+.. +..++.+
T Consensus 182 r~~~ld~~iGr~~e---i~~~i~~l~r~~---------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 182 REGKIDPVLGRDDE---IRQMIDILLRRR---------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred cCCCCCcccCCHHH---HHHHHHHHhcCC---------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 44589999999986 555554433221 2379999999999999999999975 2447777
Q ss_pred eCchhh--hhhhhhhhHHHHHHHHHHHh-cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeec
Q 009974 142 AGSEFE--EMFVGVGARRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT 218 (521)
Q Consensus 142 ~~~~~~--~~~~g~~~~~i~~~f~~a~~-~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~tt 218 (521)
+.+.+. ..+.|+.+.+++.+|+.+.. ..++||||||+|.+.+.++.... ...-+.|+..+ .+..+.+|+||
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~--~d~~n~Lkp~l----~~G~l~~IgaT 323 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ--GDAANLLKPAL----ARGELRTIAAT 323 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc--ccHHHHhhHHh----hCCCeEEEEec
Confidence 777665 35788899999999999865 46789999999999765432111 11223333333 36779999999
Q ss_pred CCCC-----CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCC----C-CCcccHHHHHhcCCCCC-----HHHHH
Q 009974 219 NLPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP----L-ADDVDVKAIARGTPGFN-----GADLA 283 (521)
Q Consensus 219 n~~~-----~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~----~-~~~~~l~~la~~~~g~s-----~~dl~ 283 (521)
+..+ .+|++|.| ||. .|.++.|+.+++..||+.+.+... + -.+..+..++..+.+|- |...-
T Consensus 324 T~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAI 400 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAV 400 (852)
T ss_pred CHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHH
Confidence 8753 48999999 995 899999999999999876654322 1 13445677777666553 45566
Q ss_pred HHHHHHHHHHHHh-CCCccCHHHHHHHH
Q 009974 284 NLVNIAAIKAAVD-GGEKLTATELEFAK 310 (521)
Q Consensus 284 ~lv~~A~~~a~~~-~~~~it~~~~~~a~ 310 (521)
.++.+|+...... ....+..+++...+
T Consensus 401 dlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 401 SLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred HHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 7777776544433 34455555554433
No 89
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=1e-15 Score=170.99 Aligned_cols=203 Identities=20% Similarity=0.193 Sum_probs=145.0
Q ss_pred CCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------------
Q 009974 71 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------- 137 (521)
Q Consensus 71 ~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~------------- 137 (521)
..+.+|++|+|++.+++.|+..+.. .+.++.+||+||+|||||++|++||+.+++.
T Consensus 9 yRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 9 YRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 4456999999999999998888762 4466679999999999999999999998752
Q ss_pred -------------EEEEeCchhhhhhhhhhhHHHHHHHHHHH----hcCCcEEEEccccccccCCcCCCcccHHHHHHHH
Q 009974 138 -------------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 200 (521)
Q Consensus 138 -------------~~~i~~~~~~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll 200 (521)
|+.++.... .+...++++.+.+. .....|+||||+|.| .....|.||
T Consensus 78 C~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l----------t~~a~NaLL 141 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMV----------TPQGFNALL 141 (824)
T ss_pred HHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhc----------CHHHHHHHH
Confidence 111211110 12234444433322 234569999999999 346788899
Q ss_pred HhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHhcCCCCCH
Q 009974 201 VEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-DVDVKAIARGTPGFNG 279 (521)
Q Consensus 201 ~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~-~~~l~~la~~~~g~s~ 279 (521)
+.|+. ....++||.+|+.++.|.+.|++ |+ .++.|..++.++..++|+..++..++.. +..+..+++...| +.
T Consensus 142 K~LEE--pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dl 215 (824)
T PRK07764 142 KIVEE--PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SV 215 (824)
T ss_pred HHHhC--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 99985 34566777777888888888887 76 6889999999999999999887766543 3345667776655 78
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 009974 280 ADLANLVNIAAIKAAVDGGEKLTATELEFA 309 (521)
Q Consensus 280 ~dl~~lv~~A~~~a~~~~~~~it~~~~~~a 309 (521)
+++.++++.... ..+...||.+++...
T Consensus 216 R~Al~eLEKLia---~~~~~~IT~e~V~al 242 (824)
T PRK07764 216 RDSLSVLDQLLA---GAGPEGVTYERAVAL 242 (824)
T ss_pred HHHHHHHHHHHh---hcCCCCCCHHHHHHH
Confidence 888888876542 224566888776543
No 90
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.68 E-value=3.7e-15 Score=156.16 Aligned_cols=222 Identities=20% Similarity=0.252 Sum_probs=151.7
Q ss_pred CcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeCchhhhh
Q 009974 75 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSEFEEM 149 (521)
Q Consensus 75 ~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~-----~~~~~~i~~~~~~~~ 149 (521)
..+.++|.++..++|...+..... ...|.+++|+||||||||++++.+++++ +.++++++|......
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 345679999988888777753211 2234579999999999999999999876 578899998643221
Q ss_pred ----------hhh-------hh-hHHHHHHHHHHHh-cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCC
Q 009974 150 ----------FVG-------VG-ARRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNE 210 (521)
Q Consensus 150 ----------~~g-------~~-~~~i~~~f~~a~~-~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~ 210 (521)
..+ .. ...+..+++.... ..+.||+|||+|.+.... ....+..++..++... ..
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~------~~~~l~~l~~~~~~~~-~~ 172 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE------GNDVLYSLLRAHEEYP-GA 172 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC------CchHHHHHHHhhhccC-CC
Confidence 111 01 1222333333332 356899999999996211 2346677776665433 23
Q ss_pred ceEEEeecCCCC---CCCccccCCCccc-eEEecCCCCHHHHHHHHHHHhccC---CCCCcccHHHHHhcCCC--CCHHH
Q 009974 211 GIILMAATNLPD---ILDPALTRPGRFD-RHIVVPNPDVRGRQEILELYLQDK---PLADDVDVKAIARGTPG--FNGAD 281 (521)
Q Consensus 211 ~vivI~ttn~~~---~ld~al~r~gRf~-~~i~~~~P~~~~r~~il~~~l~~~---~~~~~~~l~~la~~~~g--~s~~d 281 (521)
++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++.++... ...++..++.+++.+.+ ...+.
T Consensus 173 ~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~ 250 (394)
T PRK00411 173 RIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARV 250 (394)
T ss_pred eEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHH
Confidence 688888888764 46666655 563 578999999999999999888542 11233345666666532 24566
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 009974 282 LANLVNIAAIKAAVDGGEKLTATELEFAKDRI 313 (521)
Q Consensus 282 l~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~ 313 (521)
+.+++..|...|..++...|+.+|+..|++++
T Consensus 251 a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 251 AIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 67888888888888888999999999999876
No 91
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.68 E-value=1.4e-15 Score=157.07 Aligned_cols=205 Identities=20% Similarity=0.311 Sum_probs=147.7
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 137 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~------------ 137 (521)
...+.+|++++|++++++.|.+.+.. .+.|+.+|||||||+|||++|+++++.+.++
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 34557999999999999998887752 3456789999999999999999999987533
Q ss_pred ------------EEEEeCchhhhhhhhhhhHHHHHHHHHHHhc----CCcEEEEccccccccCCcCCCcccHHHHHHHHH
Q 009974 138 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 201 (521)
Q Consensus 138 ------------~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~----~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~ 201 (521)
++.++... ......++.+++.+... ...||+|||+|.+. ....+.++.
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~----------~~~~~~Ll~ 139 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS----------KSAFNALLK 139 (355)
T ss_pred HHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC----------HHHHHHHHH
Confidence 22222221 11233466676665432 23599999999882 345678888
Q ss_pred hhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHH
Q 009974 202 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGA 280 (521)
Q Consensus 202 ~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~ 280 (521)
.++. ....+++|.+|+.++.+.+.+++ |+ ..+.+++|+.++..++++.+++..+.. ++..+..++..+.| +++
T Consensus 140 ~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~ 213 (355)
T TIGR02397 140 TLEE--PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLR 213 (355)
T ss_pred HHhC--CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChH
Confidence 8875 33456777778888888888887 77 578999999999999999998776543 33446677776654 777
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009974 281 DLANLVNIAAIKAAVDGGEKLTATELEFAKD 311 (521)
Q Consensus 281 dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~ 311 (521)
.+.+.++.+...+ .+.||.+++.+++.
T Consensus 214 ~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 214 DALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred HHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 7777776655432 35699999987653
No 92
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.68 E-value=2.3e-15 Score=145.38 Aligned_cols=203 Identities=18% Similarity=0.245 Sum_probs=134.0
Q ss_pred CCcccccC--cHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhh
Q 009974 74 KTFKDVKG--CDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE 148 (521)
Q Consensus 74 ~~f~di~G--~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~ 148 (521)
.+|+++++ ...+.+.+++++. ...+.+++|+||||||||++|+++++++ +.+++++++..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~ 79 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ 79 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence 57888873 4556666666543 1234589999999999999999999876 57899999888764
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCC---
Q 009974 149 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILD--- 225 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld--- 225 (521)
.. ..++.... .+.+|+|||+|.+.... .....+..++..+. .....+|++++..+..++
T Consensus 80 ~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~-----~~~~~L~~~l~~~~---~~~~~iIits~~~~~~~~~~~ 141 (226)
T TIGR03420 80 AD--------PEVLEGLE--QADLVCLDDVEAIAGQP-----EWQEALFHLYNRVR---EAGGRLLIAGRAAPAQLPLRL 141 (226)
T ss_pred hH--------HHHHhhcc--cCCEEEEeChhhhcCCh-----HHHHHHHHHHHHHH---HcCCeEEEECCCChHHCCccc
Confidence 32 22332222 23599999999984321 01223333333322 223344444444444332
Q ss_pred ccccCCCcc--ceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccC
Q 009974 226 PALTRPGRF--DRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 302 (521)
Q Consensus 226 ~al~r~gRf--~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it 302 (521)
+.+.+ || ..++.+++|+.+++..+++.++...+.. ++..+..+++. .+.+.+++.++++.+...+.. ++..||
T Consensus 142 ~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~-~~~~i~ 217 (226)
T TIGR03420 142 PDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLA-AKRKIT 217 (226)
T ss_pred HHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH-hCCCCC
Confidence 55665 66 4689999999999999999887655443 33447778886 445999999999987765545 446799
Q ss_pred HHHHHHHH
Q 009974 303 ATELEFAK 310 (521)
Q Consensus 303 ~~~~~~a~ 310 (521)
.+.+.+.+
T Consensus 218 ~~~~~~~~ 225 (226)
T TIGR03420 218 IPFVKEVL 225 (226)
T ss_pred HHHHHHHh
Confidence 98887654
No 93
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.67 E-value=5.8e-15 Score=158.02 Aligned_cols=192 Identities=19% Similarity=0.263 Sum_probs=135.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTR 185 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~-----~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~ 185 (521)
+.++|||++|||||+|++++++++ +..++++++.+|...+...........|.... ..+.+|+||||+.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH
Confidence 359999999999999999999976 56889999998887665443322222343322 245799999999985432
Q ss_pred cCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCC---CCCccccCCCccce--EEecCCCCHHHHHHHHHHHhccCC
Q 009974 186 KQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD---ILDPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQDKP 260 (521)
Q Consensus 186 ~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~---~ld~al~r~gRf~~--~i~~~~P~~~~r~~il~~~l~~~~ 260 (521)
.....|+..++....+.+.+||++...|. .+++.|.+ ||.. .+.+..||.+.|..||+..+....
T Consensus 394 --------~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~ 463 (617)
T PRK14086 394 --------STQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQ 463 (617)
T ss_pred --------HHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcC
Confidence 12233444444433344445554443343 46788887 8855 779999999999999999998776
Q ss_pred CCC-cccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhc
Q 009974 261 LAD-DVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILM 315 (521)
Q Consensus 261 ~~~-~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~~~ 315 (521)
+.- +.-++.|+....+ +.++|..++++....+...+ +.||.+.++++++.++.
T Consensus 464 l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 464 LNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred CCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhhc
Confidence 653 3346778887764 89999999988766665544 77999999999887654
No 94
>PRK06893 DNA replication initiation factor; Validated
Probab=99.67 E-value=3.8e-15 Score=144.13 Aligned_cols=209 Identities=13% Similarity=0.163 Sum_probs=131.5
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhh
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE 148 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~ 148 (521)
+..+|++++|.+... .+..+...+ .. ... ..++||||||||||+|++++|+++ +....+++......
T Consensus 11 ~~~~fd~f~~~~~~~-~~~~~~~~~------~~--~~~-~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~ 80 (229)
T PRK06893 11 DDETLDNFYADNNLL-LLDSLRKNF------ID--LQQ-PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY 80 (229)
T ss_pred CcccccccccCChHH-HHHHHHHHh------hc--cCC-CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh
Confidence 446899999776431 111111111 11 111 258999999999999999999875 44555655543211
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCc-eEEEeecCCCCCCC--
Q 009974 149 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEG-IILMAATNLPDILD-- 225 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~-vivI~ttn~~~~ld-- 225 (521)
. ...+++... ...+|+|||++.+.+.. ..+..+..++ +....+.+ +++++++..|..++
T Consensus 81 ~--------~~~~~~~~~--~~dlLilDDi~~~~~~~-----~~~~~l~~l~---n~~~~~~~~illits~~~p~~l~~~ 142 (229)
T PRK06893 81 F--------SPAVLENLE--QQDLVCLDDLQAVIGNE-----EWELAIFDLF---NRIKEQGKTLLLISADCSPHALSIK 142 (229)
T ss_pred h--------hHHHHhhcc--cCCEEEEeChhhhcCCh-----HHHHHHHHHH---HHHHHcCCcEEEEeCCCChHHcccc
Confidence 1 112233322 34699999999985432 1122333333 33333333 45566666676554
Q ss_pred -ccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 009974 226 -PALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 303 (521)
Q Consensus 226 -~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~ 303 (521)
+.+.+..++...+.++.|+.++|.+|++..+...++. ++..+..|+++..| +.+.+..+++... .+.....+.||.
T Consensus 143 ~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~-~~~~~~~~~it~ 220 (229)
T PRK06893 143 LPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLD-KASLQAQRKLTI 220 (229)
T ss_pred chhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH-HHHHhcCCCCCH
Confidence 7787723344688999999999999999888755543 34447788888775 8899999988764 344444568999
Q ss_pred HHHHHHH
Q 009974 304 TELEFAK 310 (521)
Q Consensus 304 ~~~~~a~ 310 (521)
+.+++++
T Consensus 221 ~~v~~~L 227 (229)
T PRK06893 221 PFVKEIL 227 (229)
T ss_pred HHHHHHh
Confidence 9888765
No 95
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.66 E-value=2.7e-15 Score=152.48 Aligned_cols=207 Identities=20% Similarity=0.267 Sum_probs=134.4
Q ss_pred ccCCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009974 67 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 146 (521)
Q Consensus 67 ~~~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 146 (521)
+.....+.+|+|++|++++++.+..++. ....|+.+||+||||+|||+++++++++.+.+++.+++++
T Consensus 11 w~~kyrP~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~- 78 (316)
T PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVK-----------KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD- 78 (316)
T ss_pred ceeccCCCcHHHhcCcHHHHHHHHHHHh-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-
Confidence 3345566799999999999998888775 2345667777999999999999999999999999999877
Q ss_pred hhhhhhhhhHHHHHHHHHHH-hcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCC
Q 009974 147 EEMFVGVGARRVRSLFQAAK-KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILD 225 (521)
Q Consensus 147 ~~~~~g~~~~~i~~~f~~a~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld 225 (521)
.. .......+........ ...+.+|+|||+|.+... .....+...++.. ..++.+|.+||.+..++
T Consensus 79 ~~--~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~---------~~~~~L~~~le~~--~~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 79 CR--IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA---------DAQRHLRSFMEAY--SKNCSFIITANNKNGII 145 (316)
T ss_pred cc--HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH---------HHHHHHHHHHHhc--CCCceEEEEcCChhhch
Confidence 21 1111122222211111 134679999999988321 1222333445532 34567788999999999
Q ss_pred ccccCCCccceEEecCCCCHHHHHHHHHHHhcc-------CCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC
Q 009974 226 PALTRPGRFDRHIVVPNPDVRGRQEILELYLQD-------KPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG 297 (521)
Q Consensus 226 ~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~-------~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~ 297 (521)
+++++ ||. .+.++.|+.+++..+++.++.. .+.. ++..+..++.... .+++.+++.....+ .
T Consensus 146 ~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~----~d~r~~l~~l~~~~---~ 215 (316)
T PHA02544 146 EPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNF----PDFRRTINELQRYA---S 215 (316)
T ss_pred HHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC----CCHHHHHHHHHHHH---c
Confidence 99998 884 7899999999998877654332 1221 2223456666443 34555554443332 2
Q ss_pred CCccCHHHHHH
Q 009974 298 GEKLTATELEF 308 (521)
Q Consensus 298 ~~~it~~~~~~ 308 (521)
...++.+++..
T Consensus 216 ~~~i~~~~l~~ 226 (316)
T PHA02544 216 TGKIDAGILSE 226 (316)
T ss_pred cCCCCHHHHHH
Confidence 34677666543
No 96
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.66 E-value=5.8e-15 Score=142.85 Aligned_cols=203 Identities=15% Similarity=0.126 Sum_probs=133.0
Q ss_pred CCCcCCcccccC--cHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009974 70 EKNVKTFKDVKG--CDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 144 (521)
Q Consensus 70 ~~~~~~f~di~G--~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~ 144 (521)
...+.+|+++++ .+.+...++.+.. +...+.+++|+||||||||++|+++++++ +.+++++++.
T Consensus 11 ~~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 11 PPPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CCChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 344468999873 3455555554433 12234589999999999999999999875 6788999887
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCC-CC-
Q 009974 145 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL-PD- 222 (521)
Q Consensus 145 ~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~-~~- 222 (521)
++.... .. .....+|+|||+|.+.. ..+. .++..++....+...++|.+++. |.
T Consensus 80 ~~~~~~------------~~--~~~~~~liiDdi~~l~~-------~~~~---~L~~~~~~~~~~~~~~vl~~~~~~~~~ 135 (227)
T PRK08903 80 SPLLAF------------DF--DPEAELYAVDDVERLDD-------AQQI---ALFNLFNRVRAHGQGALLVAGPAAPLA 135 (227)
T ss_pred HhHHHH------------hh--cccCCEEEEeChhhcCc-------hHHH---HHHHHHHHHHHcCCcEEEEeCCCCHHh
Confidence 754321 11 12356999999998732 1223 33334433333444334444443 32
Q ss_pred -CCCccccCCCcc--ceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 009974 223 -ILDPALTRPGRF--DRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGG 298 (521)
Q Consensus 223 -~ld~al~r~gRf--~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~ 298 (521)
.+.+.+.+ || ...+.+++|+.+++..+++.++...++. ++..+..+++..+ -+.+++.++++.....+ ...+
T Consensus 136 ~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~-gn~~~l~~~l~~l~~~~-~~~~ 211 (227)
T PRK08903 136 LPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFR-RDMPSLMALLDALDRYS-LEQK 211 (227)
T ss_pred CCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHH-HHhC
Confidence 24455665 77 4699999999999999998877655443 3334777888555 48999999998755444 3445
Q ss_pred CccCHHHHHHHHH
Q 009974 299 EKLTATELEFAKD 311 (521)
Q Consensus 299 ~~it~~~~~~a~~ 311 (521)
+.||...+++++.
T Consensus 212 ~~i~~~~~~~~l~ 224 (227)
T PRK08903 212 RPVTLPLLREMLA 224 (227)
T ss_pred CCCCHHHHHHHHh
Confidence 8999998887764
No 97
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=3e-15 Score=160.18 Aligned_cols=203 Identities=17% Similarity=0.236 Sum_probs=145.7
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 137 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~------------ 137 (521)
...+.+|++++|++.+++.|.+.+. ..+.|+++||+||||+|||++|+++|+.+.+.
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~-----------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAIL-----------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 3455699999999999988888765 24566789999999999999999999987531
Q ss_pred ------------EEEEeCchhhhhhhhhhhHHHHHHHHHHHhc----CCcEEEEccccccccCCcCCCcccHHHHHHHHH
Q 009974 138 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 201 (521)
Q Consensus 138 ------------~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~----~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~ 201 (521)
++.++++. ..+...++.+...+... ...|++|||+|.+. ....+.|+.
T Consensus 78 sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt----------~~A~NaLLK 141 (605)
T PRK05896 78 VCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS----------TSAWNALLK 141 (605)
T ss_pred HHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC----------HHHHHHHHH
Confidence 22222211 11234466666554432 23599999999982 345678888
Q ss_pred hhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHH
Q 009974 202 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGA 280 (521)
Q Consensus 202 ~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~ 280 (521)
.++. +...+++|.+|+.+..+.+.+++ |+. .+.|++|+.++....++..+...+.. ++..+..++..+.| +.+
T Consensus 142 tLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR 215 (605)
T PRK05896 142 TLEE--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLR 215 (605)
T ss_pred HHHh--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 8884 34567777788888999999887 774 78999999999999999888765532 34446777777665 788
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 009974 281 DLANLVNIAAIKAAVDGGEKLTATELEFA 309 (521)
Q Consensus 281 dl~~lv~~A~~~a~~~~~~~it~~~~~~a 309 (521)
++.++++.+... .+ ..|+.+++...
T Consensus 216 ~AlnlLekL~~y---~~-~~It~e~V~el 240 (605)
T PRK05896 216 DGLSILDQLSTF---KN-SEIDIEDINKT 240 (605)
T ss_pred HHHHHHHHHHhh---cC-CCCCHHHHHHH
Confidence 888887764433 23 34888887764
No 98
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.7e-15 Score=163.20 Aligned_cols=202 Identities=19% Similarity=0.300 Sum_probs=148.5
Q ss_pred CCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------------
Q 009974 71 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------- 137 (521)
Q Consensus 71 ~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~------------- 137 (521)
..+.+|+||+|++.+++.|.+.+.. .+.|+.+|||||+|+|||++|+++|+.++++
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 3446999999999999999887762 3567789999999999999999999988653
Q ss_pred -----------EEEEeCchhhhhhhhhhhHHHHHHHHHHHhc----CCcEEEEccccccccCCcCCCcccHHHHHHHHHh
Q 009974 138 -----------FFYRAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 202 (521)
Q Consensus 138 -----------~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~----~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~ 202 (521)
++.+++.. ..+...++.+...+... ...|++|||+|.| .....|.|+..
T Consensus 79 c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L----------t~~a~naLLk~ 142 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHML----------STNAFNALLKT 142 (576)
T ss_pred HHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhC----------CHHHHHHHHHH
Confidence 22222211 12234566666655422 2359999999998 34567889999
Q ss_pred hhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHH
Q 009974 203 MDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGAD 281 (521)
Q Consensus 203 l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~d 281 (521)
|+. ....+++|.+|+.++.|.+.+++ |+ ..+.|..++.++....+...++..++. ++..+..+++.+.| +.++
T Consensus 143 LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr~ 216 (576)
T PRK14965 143 LEE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMRD 216 (576)
T ss_pred HHc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHH
Confidence 884 44567888888889999999887 77 488899999999999998888776654 34457777877775 7788
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 009974 282 LANLVNIAAIKAAVDGGEKLTATELEFA 309 (521)
Q Consensus 282 l~~lv~~A~~~a~~~~~~~it~~~~~~a 309 (521)
+.++++.+.... +..||.+++...
T Consensus 217 al~~Ldqliay~----g~~It~edV~~l 240 (576)
T PRK14965 217 SLSTLDQVLAFC----GDAVGDDDVAEL 240 (576)
T ss_pred HHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 888877655432 246888887654
No 99
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=5.7e-15 Score=160.11 Aligned_cols=210 Identities=19% Similarity=0.235 Sum_probs=150.5
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe-------
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA------- 142 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~------- 142 (521)
...+.+|+||+|++.+++.|...+. ..+.|.++||+||+|+|||++|+++|+.+++.....+
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~-----------~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFE-----------TGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 4455699999999999999988775 2456779999999999999999999998865321111
Q ss_pred ------Cchhh--------hhh--hhhhhHHHHHHHHHHHhc----CCcEEEEccccccccCCcCCCcccHHHHHHHHHh
Q 009974 143 ------GSEFE--------EMF--VGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 202 (521)
Q Consensus 143 ------~~~~~--------~~~--~g~~~~~i~~~f~~a~~~----~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~ 202 (521)
|..+. ... ...+...++.+.+.+... ...|++|||+|.+ .....+.|+..
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L----------s~~a~naLLKt 155 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML----------STAAFNALLKT 155 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC----------CHHHHHHHHHH
Confidence 11110 000 011245677777666432 3469999999998 34567888888
Q ss_pred hhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHhcCCCCCHHH
Q 009974 203 MDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-DVDVKAIARGTPGFNGAD 281 (521)
Q Consensus 203 l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~-~~~l~~la~~~~g~s~~d 281 (521)
|+. ....+++|.+|+.++.+.+.+++ |+ ..+.|..|+.++....++..++..+..- +..+..++..+.| +.++
T Consensus 156 LEe--Pp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~ 229 (598)
T PRK09111 156 LEE--PPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRD 229 (598)
T ss_pred HHh--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 885 33456666677777778888877 77 5799999999999999999887765543 3446677777765 8888
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009974 282 LANLVNIAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 282 l~~lv~~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
+.+.++.+... +...||.+++...+
T Consensus 230 al~~Ldkli~~----g~g~It~e~V~~ll 254 (598)
T PRK09111 230 GLSLLDQAIAH----GAGEVTAEAVRDML 254 (598)
T ss_pred HHHHHHHHHhh----cCCCcCHHHHHHHh
Confidence 88888766543 34579999887654
No 100
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.65 E-value=2.5e-15 Score=155.55 Aligned_cols=183 Identities=21% Similarity=0.333 Sum_probs=128.0
Q ss_pred CCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE---------------
Q 009974 74 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF--------------- 138 (521)
Q Consensus 74 ~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~--------------- 138 (521)
..|++|+|++.+++.|++.+..-+. .+...+.+.|+++||+||||+|||++|+++|+.+.+.-
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 4699999999999999999875332 22334566788999999999999999999999775431
Q ss_pred --------EEEeCchhhhhhhhhhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcC
Q 009974 139 --------FYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF 206 (521)
Q Consensus 139 --------~~i~~~~~~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~ 206 (521)
..+.... ...+...++.+++.+.. +...|+||||+|.+. ....|.|+..|+..
T Consensus 80 ~~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~----------~~aanaLLk~LEep 144 (394)
T PRK07940 80 LAGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT----------ERAANALLKAVEEP 144 (394)
T ss_pred hcCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC----------HHHHHHHHHHhhcC
Confidence 1111110 11223457777777654 234699999999992 34567888888853
Q ss_pred ccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHH
Q 009974 207 EQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADL 282 (521)
Q Consensus 207 ~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl 282 (521)
..++++|.+|+.++.+.+.+++ |+ ..+.|++|+.++..+++.... +. +......++..+.|..+..+
T Consensus 145 --~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~-~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 145 --PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GV-DPETARRAARASQGHIGRAR 211 (394)
T ss_pred --CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCCHHHHH
Confidence 3345555555558999999998 87 699999999999887776322 22 23345677777777554443
No 101
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=6e-15 Score=156.96 Aligned_cols=203 Identities=20% Similarity=0.268 Sum_probs=147.8
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 137 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~------------ 137 (521)
...+.+|+||+|++.+++.|+..+. ..+.|+.+|||||||+|||++|+++|+.+.++
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~-----------~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALD-----------NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 3445699999999999999988875 24567788999999999999999999987431
Q ss_pred ------------EEEEeCchhhhhhhhhhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHH
Q 009974 138 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 201 (521)
Q Consensus 138 ------------~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~ 201 (521)
++.+++++ ..+...++.+...... +...|++|||+|.+ .....+.|+.
T Consensus 76 ~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L----------t~~A~NALLK 139 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML----------TKEAFNALLK 139 (535)
T ss_pred HHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC----------CHHHHHHHHH
Confidence 22222211 0123456665554322 12359999999998 3567788999
Q ss_pred hhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHH
Q 009974 202 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGA 280 (521)
Q Consensus 202 ~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~ 280 (521)
.++.. ...+.+|.+|+.+..+.+.+++ |. ..++|.+++.++....++..+...+.. ++..+..++....| +.+
T Consensus 140 ~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR 213 (535)
T PRK08451 140 TLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLR 213 (535)
T ss_pred HHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 99864 4456666677878999999988 85 689999999999999999888776554 34457778887665 888
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 009974 281 DLANLVNIAAIKAAVDGGEKLTATELEFA 309 (521)
Q Consensus 281 dl~~lv~~A~~~a~~~~~~~it~~~~~~a 309 (521)
++.+++..+...+ ...||.+++...
T Consensus 214 ~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 214 DTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred HHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 8888888766543 456888777654
No 102
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.65 E-value=7.6e-15 Score=155.13 Aligned_cols=190 Identities=16% Similarity=0.251 Sum_probs=133.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeCchhhhhhhhhhhH---HHHHHHHHHHhcCCcEEEEccccccc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSEFEEMFVGVGAR---RVRSLFQAAKKKAPCIIFIDEIDAVG 182 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~-----~~~~~~i~~~~~~~~~~g~~~~---~i~~~f~~a~~~~p~Il~IDEiD~l~ 182 (521)
++++||||+|+|||+|++++++++ +..++++++.+|...+...... .+..+.... ..+.+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEecccccc
Confidence 469999999999999999999854 4678999998887766543222 222222222 345699999999884
Q ss_pred cCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCC---CCCccccCCCccce--EEecCCCCHHHHHHHHHHHhc
Q 009974 183 STRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD---ILDPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQ 257 (521)
Q Consensus 183 ~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~---~ld~al~r~gRf~~--~i~~~~P~~~~r~~il~~~l~ 257 (521)
.+ ..+...|+..++......+.+|+++...|. .+++.+.+ ||.. .+.+.+|+.++|..|+++.++
T Consensus 220 ~k--------~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~ 289 (450)
T PRK14087 220 YK--------EKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIK 289 (450)
T ss_pred CC--------HHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHH
Confidence 32 223334444444333344445555444454 35678877 8864 788999999999999999997
Q ss_pred cCCC---CCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC-CCccCHHHHHHHHHHH
Q 009974 258 DKPL---ADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG-GEKLTATELEFAKDRI 313 (521)
Q Consensus 258 ~~~~---~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~-~~~it~~~~~~a~~~~ 313 (521)
..++ -++..+..|+..+.| +++.+..+++++...+.... +..||.+.+.+++...
T Consensus 290 ~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 290 NQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred hcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 6543 234457788888876 89999999998876555442 3789999999998875
No 103
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.65 E-value=3.2e-15 Score=146.55 Aligned_cols=230 Identities=27% Similarity=0.374 Sum_probs=143.8
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC---EEEEeCchh
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP---FFYRAGSEF 146 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~---~~~i~~~~~ 146 (521)
.-.+.+++|.+|++.+..+ ..++..+-.. .+.| +++||||||||||++|+.|+.....+ |+.+++..
T Consensus 131 rmRPktL~dyvGQ~hlv~q-~gllrs~ieq-------~~ip-SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~- 200 (554)
T KOG2028|consen 131 RMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQ-------NRIP-SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN- 200 (554)
T ss_pred hcCcchHHHhcchhhhcCc-chHHHHHHHc-------CCCC-ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-
Confidence 3356689999999987655 3333322111 2344 79999999999999999999988766 77777643
Q ss_pred hhhhhhhhhHHHHHHHHHHHh-----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeec-CC
Q 009974 147 EEMFVGVGARRVRSLFQAAKK-----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT-NL 220 (521)
Q Consensus 147 ~~~~~g~~~~~i~~~f~~a~~-----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~tt-n~ 220 (521)
...+.++++|+.++. ....|||||||+.+-... ...||-.++ +..|++|++| ..
T Consensus 201 ------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQ----------QD~fLP~VE----~G~I~lIGATTEN 260 (554)
T KOG2028|consen 201 ------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQ----------QDTFLPHVE----NGDITLIGATTEN 260 (554)
T ss_pred ------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhh----------hhcccceec----cCceEEEecccCC
Confidence 234568888988865 346799999999984321 123333333 5678888865 34
Q ss_pred CC-CCCccccCCCccceEEecCCCCHHHHHHHHHHHhc---c-----CCCC------CcccHHHHHhcCCCCCHHHHHHH
Q 009974 221 PD-ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ---D-----KPLA------DDVDVKAIARGTPGFNGADLANL 285 (521)
Q Consensus 221 ~~-~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~---~-----~~~~------~~~~l~~la~~~~g~s~~dl~~l 285 (521)
|. .|+.+|++ |+ +++.+...+.+....||.+-.. + .++. ++--++.++..+.|-..+.|..+
T Consensus 261 PSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~L 337 (554)
T KOG2028|consen 261 PSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNAL 337 (554)
T ss_pred CccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHH
Confidence 43 68889988 77 5777888888888888887443 1 1121 12235677776666433333322
Q ss_pred HHHH-HHHHHHhC---CCccCHHHHHHHHHHHhcCccccccccchHHHHHHHHHH
Q 009974 286 VNIA-AIKAAVDG---GEKLTATELEFAKDRILMGTERKTMFISEESKKLTAYHE 336 (521)
Q Consensus 286 v~~A-~~~a~~~~---~~~it~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~a~he 336 (521)
+.+ .+...+.+ +..++.+|+++++.+--.--.+ .-.+....+-|+|.
T Consensus 338 -ems~~m~~tr~g~~~~~~lSidDvke~lq~s~~~YDr---~Ge~HYntISA~HK 388 (554)
T KOG2028|consen 338 -EMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHILYDR---AGEEHYNTISALHK 388 (554)
T ss_pred -HHHHHHHHhhcCCcccceecHHHHHHHHhhccceecc---cchhHHHHHHHHHH
Confidence 222 12223333 3478999999988753211011 12334456677776
No 104
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=3.7e-15 Score=158.49 Aligned_cols=210 Identities=21% Similarity=0.283 Sum_probs=145.5
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------EEE-E
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------FFY-R 141 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~-------~~~-i 141 (521)
...+.+|++++|++.+.+.|+..+.. .+.++.+|||||||+|||++|+.+|+.+++. +-. .
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 44556999999999999988887752 3456678999999999999999999987641 111 1
Q ss_pred eCchhhh-----hh-----hhhhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc
Q 009974 142 AGSEFEE-----MF-----VGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 207 (521)
Q Consensus 142 ~~~~~~~-----~~-----~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~ 207 (521)
+|..+.. .+ ...+...++.+.+.+.. +.+.|++|||+|.+. ....+.|+..++.
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt----------~~a~naLLk~LEe-- 145 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT----------KEAFNALLKTLEE-- 145 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC----------HHHHHHHHHHHhc--
Confidence 1111100 00 01123345555544432 335699999999883 3456788888875
Q ss_pred cCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHhcCCCCCHHHHHHHH
Q 009974 208 QNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-DVDVKAIARGTPGFNGADLANLV 286 (521)
Q Consensus 208 ~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~-~~~l~~la~~~~g~s~~dl~~lv 286 (521)
+...+++|.+|+.++.+.+.+.+ |+. .+.|++|+.++...+++.+++..++.. +..+..++..+.| +.+++.+++
T Consensus 146 pp~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~al~~L 221 (486)
T PRK14953 146 PPPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDAASLL 221 (486)
T ss_pred CCCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 33455666667777888888877 774 789999999999999999988766543 3346677777664 778888888
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHH
Q 009974 287 NIAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 287 ~~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
+.+... +...||.+++..++
T Consensus 222 dkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 222 DQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHh----cCCCcCHHHHHHHh
Confidence 776543 35578988887754
No 105
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.65 E-value=1e-14 Score=153.61 Aligned_cols=194 Identities=18% Similarity=0.255 Sum_probs=131.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK 186 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~ 186 (521)
.++++||||||+|||+|++++++++ +.+++++++.++...+...........|.... ..+.+|+|||++.+.++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~- 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG- 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh-
Confidence 3579999999999999999999875 68899999887766544332211112343332 345799999999985432
Q ss_pred CCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCC---CCCccccCCCccc--eEEecCCCCHHHHHHHHHHHhccCCC
Q 009974 187 QWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD---ILDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPL 261 (521)
Q Consensus 187 ~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~---~ld~al~r~gRf~--~~i~~~~P~~~~r~~il~~~l~~~~~ 261 (521)
.....++..++........+|+++++.|. .+++.+.+ ||. ..+.+++|+.++|..|++..+...++
T Consensus 219 -------~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~ 289 (445)
T PRK12422 219 -------ATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSI 289 (445)
T ss_pred -------hhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 12223333333222233455555555554 46788887 995 68899999999999999999887654
Q ss_pred CC-cccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh--CCCccCHHHHHHHHHHHhc
Q 009974 262 AD-DVDVKAIARGTPGFNGADLANLVNIAAIKAAVD--GGEKLTATELEFAKDRILM 315 (521)
Q Consensus 262 ~~-~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~--~~~~it~~~~~~a~~~~~~ 315 (521)
.- +..+..++....+ +.+++...++..+...+.. .+..||.+.+++++.....
T Consensus 290 ~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 290 RIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVLE 345 (445)
T ss_pred CCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhh
Confidence 43 3336667777664 7888888888775322221 3467999999999987654
No 106
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=5.7e-15 Score=160.99 Aligned_cols=210 Identities=23% Similarity=0.301 Sum_probs=150.4
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE---EeCchh
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY---RAGSEF 146 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~---i~~~~~ 146 (521)
..++.+|++|+|++.+++.|+..+. ..+.++.+||+||+|+|||++|+++|+.+.++--. -.|..+
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~-----------~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C 79 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIK-----------SNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC 79 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence 4455699999999999999988886 23567789999999999999999999988663210 011111
Q ss_pred hh---h----h--hh---hhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCC
Q 009974 147 EE---M----F--VG---VGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNE 210 (521)
Q Consensus 147 ~~---~----~--~g---~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~ 210 (521)
.. . + .+ .+...++.+.+.+.. +...|++|||+|.|. ....+.|+..|+. +..
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT----------~~A~NALLKtLEE--PP~ 147 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS----------KSAFNALLKTLEE--PPK 147 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC----------HHHHHHHHHHhhc--CCC
Confidence 10 0 0 01 124456777766653 334699999999983 3568889988885 445
Q ss_pred ceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHhcCCCCCHHHHHHHHHHH
Q 009974 211 GIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-DVDVKAIARGTPGFNGADLANLVNIA 289 (521)
Q Consensus 211 ~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~-~~~l~~la~~~~g~s~~dl~~lv~~A 289 (521)
.+++|.+|+.++.|.+.+++ |+ .++.|.+|+.++....++..+...+... +..+..++..+.| +.+++.++++.+
T Consensus 148 ~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLekl 223 (725)
T PRK07133 148 HVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAEQV 223 (725)
T ss_pred ceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 67778888889999999887 88 4899999999999999998887665443 3336677777664 778888887765
Q ss_pred HHHHHHhCCCccCHHHHHHHH
Q 009974 290 AIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 290 ~~~a~~~~~~~it~~~~~~a~ 310 (521)
... +...|+.+++...+
T Consensus 224 ~~y----~~~~It~e~V~ell 240 (725)
T PRK07133 224 SIF----GNNKITLKNVEELF 240 (725)
T ss_pred HHh----ccCCCCHHHHHHHH
Confidence 433 23458888887653
No 107
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.65 E-value=9.5e-15 Score=141.90 Aligned_cols=204 Identities=16% Similarity=0.170 Sum_probs=131.4
Q ss_pred cCCccccc-C-cHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhh
Q 009974 73 VKTFKDVK-G-CDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE 147 (521)
Q Consensus 73 ~~~f~di~-G-~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~ 147 (521)
..+|++++ | +..+...+.++.. . ..+.+++||||||||||++++++++++ +..+.+++.....
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~---~---------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALR---Q---------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRA 85 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHh
Confidence 35788887 4 4445555544432 1 112479999999999999999999875 3456666665432
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCc-eEEEeecCCCCC---
Q 009974 148 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEG-IILMAATNLPDI--- 223 (521)
Q Consensus 148 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~-vivI~ttn~~~~--- 223 (521)
.. ..++++.... ..+|+|||++.+..+. ..+..+..++..+ ..+.+ .+++++++.|..
T Consensus 86 ~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~-----~~~~~lf~l~n~~---~e~g~~~li~ts~~~p~~l~~ 147 (235)
T PRK08084 86 WF--------VPEVLEGMEQ--LSLVCIDNIECIAGDE-----LWEMAIFDLYNRI---LESGRTRLLITGDRPPRQLNL 147 (235)
T ss_pred hh--------hHHHHHHhhh--CCEEEEeChhhhcCCH-----HHHHHHHHHHHHH---HHcCCCeEEEeCCCChHHcCc
Confidence 21 1112222222 2589999999985431 1223333333332 22333 355555556554
Q ss_pred CCccccCCCccc--eEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 009974 224 LDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEK 300 (521)
Q Consensus 224 ld~al~r~gRf~--~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~ 300 (521)
+.+.+++ |+. .++.+.+|+.+++.++++..+...++. ++..++.+++...| +.+.+.++++... .+....++.
T Consensus 148 ~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~-~~~l~~~~~ 223 (235)
T PRK08084 148 GLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLD-RASITAQRK 223 (235)
T ss_pred ccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHH-HHHHhcCCC
Confidence 5788888 886 589999999999999999877655443 34447788888775 8999999998753 344445577
Q ss_pred cCHHHHHHHH
Q 009974 301 LTATELEFAK 310 (521)
Q Consensus 301 it~~~~~~a~ 310 (521)
||.+.+++++
T Consensus 224 it~~~~k~~l 233 (235)
T PRK08084 224 LTIPFVKEIL 233 (235)
T ss_pred CCHHHHHHHH
Confidence 9998888765
No 108
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.65 E-value=2.7e-15 Score=169.93 Aligned_cols=167 Identities=22% Similarity=0.326 Sum_probs=127.1
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEE
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYR 141 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~----------~~~~~~i 141 (521)
.+.++++++|.++. +++++..|.... ..+++|+||||||||++|+++|... +.+++.+
T Consensus 173 r~~~l~~vigr~~e---i~~~i~iL~r~~---------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 173 EQGKLDPVIGRDEE---IRRTIQVLQRRT---------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred hcCCCCcCCCCHHH---HHHHHHHHhcCC---------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 34589999999985 555555443322 2379999999999999999999987 6788888
Q ss_pred eCchhh--hhhhhhhhHHHHHHHHHHHh-cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeec
Q 009974 142 AGSEFE--EMFVGVGARRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT 218 (521)
Q Consensus 142 ~~~~~~--~~~~g~~~~~i~~~f~~a~~-~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~tt 218 (521)
+...+. ..|.|..+++++.+|..+.. ..|+||||||+|.+.+....... ....+.|...+ .+..+.+|++|
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~--~d~~~~lkp~l----~~g~l~~IgaT 314 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA--MDAGNMLKPAL----ARGELHCVGAT 314 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccc--hhHHHHhcchh----hcCCCeEEEcC
Confidence 888765 45788899999999988644 56899999999999765432211 12222233222 46789999999
Q ss_pred CCCC-----CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccC
Q 009974 219 NLPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK 259 (521)
Q Consensus 219 n~~~-----~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~ 259 (521)
+..+ .+|+++.| ||+ .|.++.|+.+++..|++.+....
T Consensus 315 t~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 315 TLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred CCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 9876 48999999 997 58899999999999998876543
No 109
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=5.5e-15 Score=153.37 Aligned_cols=210 Identities=19% Similarity=0.270 Sum_probs=143.2
Q ss_pred CCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchh----
Q 009974 71 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF---- 146 (521)
Q Consensus 71 ~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~---- 146 (521)
..+.+|+|++|++.+++.+.+.+.. .+.|+++|||||||+|||++|+++++.+..+.....+..+
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 3456999999999998888887752 3456789999999999999999999987653211111000
Q ss_pred --hhhhhhhhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCC
Q 009974 147 --EEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 220 (521)
Q Consensus 147 --~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~ 220 (521)
.+.........++.+++.+.. ..+.||+|||+|.+. ...++.++..++. .....++|.+|+.
T Consensus 80 ~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~----------~~~~~~ll~~le~--~~~~~~~Il~~~~ 147 (367)
T PRK14970 80 FELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS----------SAAFNAFLKTLEE--PPAHAIFILATTE 147 (367)
T ss_pred EEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC----------HHHHHHHHHHHhC--CCCceEEEEEeCC
Confidence 000011123456666666543 235699999999883 2356777777764 2334566666777
Q ss_pred CCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 009974 221 PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGE 299 (521)
Q Consensus 221 ~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~ 299 (521)
+..+.+++.+ |+ ..+.+++|+.++...++...+...+.. ++..+..++..+.| +.+.+.+.++.....+ +..
T Consensus 148 ~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y~---~~~ 220 (367)
T PRK14970 148 KHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTFC---GKN 220 (367)
T ss_pred cccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc---CCC
Confidence 7888888877 66 478999999999999999888776653 44557777876654 6777777776554433 333
Q ss_pred ccCHHHHHHHHH
Q 009974 300 KLTATELEFAKD 311 (521)
Q Consensus 300 ~it~~~~~~a~~ 311 (521)
||.++++..+.
T Consensus 221 -it~~~v~~~~~ 231 (367)
T PRK14970 221 -ITRQAVTENLN 231 (367)
T ss_pred -CCHHHHHHHhC
Confidence 88888776543
No 110
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=7.1e-15 Score=158.67 Aligned_cols=209 Identities=18% Similarity=0.229 Sum_probs=146.9
Q ss_pred CCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------EEEE-e
Q 009974 71 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------FFYR-A 142 (521)
Q Consensus 71 ~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~-------~~~i-~ 142 (521)
..+.+|+||+|++.+++.|+..+. ..+.|+.+|||||||+|||++|+++|+.++++ +-.+ +
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~-----------~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIE-----------SNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 344699999999999999888876 23466789999999999999999999988652 1110 0
Q ss_pred Cchhhhh-------hhh---hhhHHHHHHHHHHH----hcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCcc
Q 009974 143 GSEFEEM-------FVG---VGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ 208 (521)
Q Consensus 143 ~~~~~~~-------~~g---~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~ 208 (521)
|..+... +.| .+...++.+.+.+. .....|++|||+|.+ .....+.|+..++. +
T Consensus 79 C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L----------s~~a~naLLK~LEe--p 146 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML----------SNSAFNALLKTIEE--P 146 (563)
T ss_pred HHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc----------CHHHHHHHHHhhcc--C
Confidence 1000000 011 12234555544433 234569999999998 34567888888884 4
Q ss_pred CCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHH
Q 009974 209 NEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVN 287 (521)
Q Consensus 209 ~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~ 287 (521)
...+++|.+|+.+..+.+++++ |+. .+.|.+|+.++....++..+...+.. ++..+..++....| +.+++.++++
T Consensus 147 p~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~alslLd 222 (563)
T PRK06647 147 PPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAYTLFD 222 (563)
T ss_pred CCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 5567777777888889888887 874 78999999999999999888665543 34446777777665 7888888887
Q ss_pred HHHHHHHHhCCCccCHHHHHHHH
Q 009974 288 IAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 288 ~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
.+... ....||.+++...+
T Consensus 223 klis~----~~~~It~e~V~~ll 241 (563)
T PRK06647 223 QVVSF----SDSDITLEQIRSKM 241 (563)
T ss_pred HHHhh----cCCCCCHHHHHHHh
Confidence 66543 23568888777654
No 111
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.64 E-value=1.1e-14 Score=157.84 Aligned_cols=217 Identities=21% Similarity=0.252 Sum_probs=143.1
Q ss_pred ccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-------C---CCEEEEeCchh
Q 009974 77 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-------G---VPFFYRAGSEF 146 (521)
Q Consensus 77 ~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~-------~---~~~~~i~~~~~ 146 (521)
+.|.|.++..++|..++..... +..+...++|+||||||||++++.+.+++ + +.+++++|..+
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 4677888877777776664221 12222345699999999999999998765 2 55789999654
Q ss_pred hhhhh----------------h-hhhHHHHHHHHHHHh--cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc
Q 009974 147 EEMFV----------------G-VGARRVRSLFQAAKK--KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 207 (521)
Q Consensus 147 ~~~~~----------------g-~~~~~i~~~f~~a~~--~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~ 207 (521)
...+. | .....+..+|..... ....||+|||||.|... .+..+..|+.... .
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-------~QDVLYnLFR~~~--~ 898 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-------TQKVLFTLFDWPT--K 898 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-------HHHHHHHHHHHhh--c
Confidence 32210 1 112345566665422 33569999999999653 2456666666543 2
Q ss_pred cCCceEEEeecCC---CCCCCccccCCCccce-EEecCCCCHHHHHHHHHHHhccC-CCCCcccHHHHHhcCCCCCHHHH
Q 009974 208 QNEGIILMAATNL---PDILDPALTRPGRFDR-HIVVPNPDVRGRQEILELYLQDK-PLADDVDVKAIARGTPGFNGADL 282 (521)
Q Consensus 208 ~~~~vivI~ttn~---~~~ld~al~r~gRf~~-~i~~~~P~~~~r~~il~~~l~~~-~~~~~~~l~~la~~~~g~s~~dl 282 (521)
....++||+++|. ++.+++.+.+ ||.. .+.|++++.+++.+||+..+... ..-++..++.+|+.... ..+|+
T Consensus 899 s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq-~SGDA 975 (1164)
T PTZ00112 899 INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVAN-VSGDI 975 (1164)
T ss_pred cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh-cCCHH
Confidence 3567899999986 5567788877 7754 58899999999999999998753 22234446667764432 23455
Q ss_pred H---HHHHHHHHHHHHhCCCccCHHHHHHHHHHHhc
Q 009974 283 A---NLVNIAAIKAAVDGGEKLTATELEFAKDRILM 315 (521)
Q Consensus 283 ~---~lv~~A~~~a~~~~~~~it~~~~~~a~~~~~~ 315 (521)
+ ++|+.|... .+...|+.+|+.+|..++..
T Consensus 976 RKALDILRrAgEi---kegskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 976 RKALQICRKAFEN---KRGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred HHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHh
Confidence 5 455555443 35568999999999887643
No 112
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3.5e-15 Score=157.27 Aligned_cols=168 Identities=27% Similarity=0.441 Sum_probs=129.2
Q ss_pred ccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh---------
Q 009974 77 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE--------- 147 (521)
Q Consensus 77 ~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~--------- 147 (521)
+|-.|.+++|+++.+++.--+.. |....+-+.|+||||+|||+++++||+.+|..|+.++...+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 46799999999999987652211 222335688999999999999999999999999999875542
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHh------hhcC----ccCCceEEEee
Q 009974 148 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE------MDGF----EQNEGIILMAA 217 (521)
Q Consensus 148 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~------l~~~----~~~~~vivI~t 217 (521)
..|+|....++-+.+....-..| +++|||+|.+++..+ +.....+.++|.- +|.+ -+-++|++|||
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~q---GDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicT 560 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQ---GDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICT 560 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCC---CChHHHHHHhcChhhccchhhhccccccchhheEEEEe
Confidence 24889888888888888888887 899999999984332 2233333333311 1111 12356999999
Q ss_pred cCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhc
Q 009974 218 TNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ 257 (521)
Q Consensus 218 tn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~ 257 (521)
+|..+.|+++|+. |+ ..|.++-+..++..+|.+.|+-
T Consensus 561 AN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 561 ANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred ccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhh
Confidence 9999999999998 88 5899999999999999999984
No 113
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=5.7e-15 Score=154.38 Aligned_cols=213 Identities=15% Similarity=0.216 Sum_probs=144.3
Q ss_pred CCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEE----------E
Q 009974 71 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF----------Y 140 (521)
Q Consensus 71 ~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~----------~ 140 (521)
..+.+|++|+|++.+++.|+..+. ..+.|.++||+||||+|||++|+++|+.+.+.-. .
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~-----------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLR-----------MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHH-----------hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 344699999999999998888776 2456778999999999999999999999876310 0
Q ss_pred EeCchh------hh-------hhhh---hhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHH
Q 009974 141 RAGSEF------EE-------MFVG---VGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 200 (521)
Q Consensus 141 i~~~~~------~~-------~~~g---~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll 200 (521)
-.|... .. .+.+ .+...++.+.+.+.. ....|+||||+|.+. ....+.|+
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~----------~~~~~~LL 148 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS----------IAAFNAFL 148 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC----------HHHHHHHH
Confidence 011110 00 0011 113455555544421 223599999999983 34566788
Q ss_pred HhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCH
Q 009974 201 VEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNG 279 (521)
Q Consensus 201 ~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~ 279 (521)
..++. .....++|.+|+.+..+.+.+.+ |+. .++|++++.++....++..++..+.. ++..+..++..+.| +.
T Consensus 149 k~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g-~l 222 (397)
T PRK14955 149 KTLEE--PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQG-SM 222 (397)
T ss_pred HHHhc--CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 88874 33445555566667778778776 664 78999999999999888888765542 34446777777664 77
Q ss_pred HHHHHHHHHHHHHHHH-hCCCccCHHHHHHHH
Q 009974 280 ADLANLVNIAAIKAAV-DGGEKLTATELEFAK 310 (521)
Q Consensus 280 ~dl~~lv~~A~~~a~~-~~~~~it~~~~~~a~ 310 (521)
+.+.+.++.+...+.. .....||.+++.+.+
T Consensus 223 r~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 223 RDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 7777777766555432 235689998887665
No 114
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.63 E-value=6.4e-15 Score=167.52 Aligned_cols=204 Identities=21% Similarity=0.277 Sum_probs=145.5
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEE
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYR 141 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~----------~~~~~~i 141 (521)
....++.++|.++. +++++..+... ..++++|+||||||||++++++|... +.+++.+
T Consensus 168 ~~~~~~~~igr~~e---i~~~~~~l~r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 168 REGKLDPVIGRDEE---IRRTIQVLSRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred hCCCCCcCCCcHHH---HHHHHHHHhcC---------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 44579999999986 44444443322 22478999999999999999999975 6778888
Q ss_pred eCchhh--hhhhhhhhHHHHHHHHHHHh-cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeec
Q 009974 142 AGSEFE--EMFVGVGARRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT 218 (521)
Q Consensus 142 ~~~~~~--~~~~g~~~~~i~~~f~~a~~-~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~tt 218 (521)
+...+. ..|.|..+++++.+|..+.. ..|+||||||+|.+.+...... .....+.|... ..+..+.+|++|
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~--~~d~~~~Lk~~----l~~g~i~~IgaT 309 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG--AMDAGNMLKPA----LARGELHCIGAT 309 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc--hhHHHHHhchh----hhcCceEEEEeC
Confidence 877765 46888889999999998865 4589999999999975432211 12223333222 246779999999
Q ss_pred CCCC-----CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-----CcccHHHHHhcCCCC-----CHHHHH
Q 009974 219 NLPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-----DDVDVKAIARGTPGF-----NGADLA 283 (521)
Q Consensus 219 n~~~-----~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-----~~~~l~~la~~~~g~-----s~~dl~ 283 (521)
+..+ .+|+++.| ||. .|.++.|+.+++..|++.+....... .+..+...+..+.+| -|...-
T Consensus 310 t~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAi 386 (852)
T TIGR03346 310 TLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAI 386 (852)
T ss_pred cHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHH
Confidence 9774 47999999 996 58899999999999999876554332 233455555555444 355666
Q ss_pred HHHHHHHHHHHHh
Q 009974 284 NLVNIAAIKAAVD 296 (521)
Q Consensus 284 ~lv~~A~~~a~~~ 296 (521)
.++++|+......
T Consensus 387 dlld~a~a~~~~~ 399 (852)
T TIGR03346 387 DLIDEAAARIRME 399 (852)
T ss_pred HHHHHHHHHHHhh
Confidence 7888877655443
No 115
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=1.9e-14 Score=152.17 Aligned_cols=202 Identities=19% Similarity=0.253 Sum_probs=141.8
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC--------------
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------------- 137 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~-------------- 137 (521)
.+.+|+||+|++.+++.|+..+.. .+.|+.+|||||||+|||++|+++|+.+.++
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 446999999999999988887752 3567789999999999999999999987542
Q ss_pred -----------EEEEeCchhhhhhhhhhhHHHHHHHHHHH----hcCCcEEEEccccccccCCcCCCcccHHHHHHHHHh
Q 009974 138 -----------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 202 (521)
Q Consensus 138 -----------~~~i~~~~~~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~ 202 (521)
++.+++... .+...++.+-+... .....|++|||+|.+. ....+.|+..
T Consensus 81 C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt----------~~~~n~LLk~ 144 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT----------KEAFNSLLKT 144 (451)
T ss_pred HHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC----------HHHHHHHHHH
Confidence 222222110 11223333322221 2345799999999983 3456788888
Q ss_pred hhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHH
Q 009974 203 MDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGAD 281 (521)
Q Consensus 203 l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~d 281 (521)
++. ....+++|.+||.+..+.+.+++ |+ ..+.|+.++.++....++..++..+.. ++..+..++..+.| +.++
T Consensus 145 lEe--p~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~ 218 (451)
T PRK06305 145 LEE--PPQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRD 218 (451)
T ss_pred hhc--CCCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 885 34466777777888888888887 77 478999999999999998888765543 34457778877654 6666
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009974 282 LANLVNIAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 282 l~~lv~~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
+.+.++..... .+ ..|+.+++..++
T Consensus 219 a~~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 219 AESLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 66666654332 23 459998887665
No 116
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.62 E-value=9e-15 Score=165.87 Aligned_cols=203 Identities=20% Similarity=0.269 Sum_probs=146.5
Q ss_pred cCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEEe
Q 009974 73 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYRA 142 (521)
Q Consensus 73 ~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~----------~~~~~~i~ 142 (521)
...|+.++|.++..+++.+++. .+.+++++|+||||||||++|+.+|.+. +.+++.++
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILG------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHc------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3469999999997777666653 2234589999999999999999999976 46799999
Q ss_pred Cchhh--hhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCC
Q 009974 143 GSEFE--EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 220 (521)
Q Consensus 143 ~~~~~--~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~ 220 (521)
.+.+. ..|.|+.+++++.+|+.+....++||||||+|.+.+....... ....+-|...+. +..+.+|++|+.
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~--~~~a~lLkp~l~----rg~l~~IgaTt~ 316 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA--IDAANILKPALA----RGELQCIGATTL 316 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc--ccHHHHhHHHHh----CCCcEEEEeCCH
Confidence 88776 4678889999999999998888899999999999765432211 122222323332 567899999997
Q ss_pred CC-----CCCccccCCCccceEEecCCCCHHHHHHHHHHHhcc----CCC-CCcccHHHHHhcCCCC-----CHHHHHHH
Q 009974 221 PD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD----KPL-ADDVDVKAIARGTPGF-----NGADLANL 285 (521)
Q Consensus 221 ~~-----~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~----~~~-~~~~~l~~la~~~~g~-----s~~dl~~l 285 (521)
.+ ..|+++.+ ||. .+.++.|+.++...|++..... ..+ -++..+..++..+.+| -|...-.+
T Consensus 317 ~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidl 393 (821)
T CHL00095 317 DEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDL 393 (821)
T ss_pred HHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHH
Confidence 64 47899999 996 5799999999998888764421 222 1333456666655554 35556677
Q ss_pred HHHHHHHHHHh
Q 009974 286 VNIAAIKAAVD 296 (521)
Q Consensus 286 v~~A~~~a~~~ 296 (521)
+.+|.......
T Consensus 394 ld~a~a~~~~~ 404 (821)
T CHL00095 394 LDEAGSRVRLI 404 (821)
T ss_pred HHHHHHHHHhh
Confidence 77777655443
No 117
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.62 E-value=4.2e-14 Score=154.90 Aligned_cols=216 Identities=21% Similarity=0.244 Sum_probs=134.8
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEE
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFF 139 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~----------~~~~~ 139 (521)
...+.+|++++|++.+.+.+...+. . ..|.+++|+||||||||++|+++++.. +.+|+
T Consensus 147 ~~rp~~~~~iiGqs~~~~~l~~~ia---~---------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKALLAKVA---S---------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred hcCcCcHHhceeCcHHHHHHHHHHh---c---------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 3346799999999998877654432 1 124579999999999999999998654 46799
Q ss_pred EEeCchhhh-------hhhhhhhH----HHHHHHHH----------HHhcCCcEEEEccccccccCCcCCCcccHHHHHH
Q 009974 140 YRAGSEFEE-------MFVGVGAR----RVRSLFQA----------AKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQ 198 (521)
Q Consensus 140 ~i~~~~~~~-------~~~g~~~~----~i~~~f~~----------a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ 198 (521)
.++|..+.. .+.+.... ..+..+.. .......+|||||++.|. ......
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld----------~~~Q~~ 284 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD----------PLLQNK 284 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC----------HHHHHH
Confidence 999876521 11111100 00111110 001123599999999882 223334
Q ss_pred HHHhhhcC--------------------------ccCCceEEEe-ecCCCCCCCccccCCCccceEEecCCCCHHHHHHH
Q 009974 199 LLVEMDGF--------------------------EQNEGIILMA-ATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEI 251 (521)
Q Consensus 199 ll~~l~~~--------------------------~~~~~vivI~-ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~i 251 (521)
|+..++.- .....+++|+ ||+.++.+++++++ ||. .+.+++++.+++..|
T Consensus 285 Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~I 361 (615)
T TIGR02903 285 LLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALI 361 (615)
T ss_pred HHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHH
Confidence 44444321 0122356665 55668889999987 886 678899999999999
Q ss_pred HHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh--------CCCccCHHHHHHHHHH
Q 009974 252 LELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD--------GGEKLTATELEFAKDR 312 (521)
Q Consensus 252 l~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~--------~~~~it~~~~~~a~~~ 312 (521)
++.++...... ++..+..++..+. .++..-+++..+...+..+ ....|+.+|+++++..
T Consensus 362 l~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 362 VLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 99998765432 2334566666553 4555555655554443221 2236899999888753
No 118
>PRK08727 hypothetical protein; Validated
Probab=99.62 E-value=4.3e-14 Score=137.12 Aligned_cols=179 Identities=22% Similarity=0.273 Sum_probs=118.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQ 187 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~ 187 (521)
..++|+||+|||||+++++++.++ +....+++..++... +...++... ...+|+|||+|.+.....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~--------~~~~~~~l~--~~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGR--------LRDALEALE--GRSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhh--------HHHHHHHHh--cCCEEEEeCcccccCChH-
Confidence 469999999999999999997754 567777776554322 233444333 345999999998854321
Q ss_pred CCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCC---CccccCCCcc--ceEEecCCCCHHHHHHHHHHHhccCCCC
Q 009974 188 WEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL---DPALTRPGRF--DRHIVVPNPDVRGRQEILELYLQDKPLA 262 (521)
Q Consensus 188 ~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~l---d~al~r~gRf--~~~i~~~~P~~~~r~~il~~~l~~~~~~ 262 (521)
....+..++..+ ..+..-+|+++.+.|..+ ++.+.+ || ...+.+++|+.+++..|++.++...++.
T Consensus 111 ----~~~~lf~l~n~~---~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~ 181 (233)
T PRK08727 111 ----DEVALFDFHNRA---RAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLA 181 (233)
T ss_pred ----HHHHHHHHHHHH---HHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 122333333333 223333444444556544 688887 87 4588999999999999999877654443
Q ss_pred -CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009974 263 -DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKD 311 (521)
Q Consensus 263 -~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~ 311 (521)
++..+..+++.+.| +.+.+.++++.....+... ++.||.+.+++.+.
T Consensus 182 l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~-~~~it~~~~~~~l~ 229 (233)
T PRK08727 182 LDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAA-KRRVTVPFLRRVLE 229 (233)
T ss_pred CCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHh
Confidence 34447788887764 6677777777655444443 45799988887764
No 119
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.61 E-value=6.4e-15 Score=154.88 Aligned_cols=209 Identities=21% Similarity=0.299 Sum_probs=158.7
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE--EEE---eCc
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF--FYR---AGS 144 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~--~~i---~~~ 144 (521)
..++.+|+|++|++.+...|...+.. .+.+.+.||+||.|||||++||.+|+.+++.- ..- .|.
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~-----------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALEN-----------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHh-----------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 34456999999999999999998873 44556899999999999999999999887641 111 111
Q ss_pred -----------hhhhh--hhhhhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc
Q 009974 145 -----------EFEEM--FVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 207 (521)
Q Consensus 145 -----------~~~~~--~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~ 207 (521)
++.+. -...+...+|.+.+.+.. ++..|.+|||+|.| +....|.||..++ .
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML----------S~~afNALLKTLE--E 145 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML----------SKQAFNALLKTLE--E 145 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh----------hHHHHHHHhcccc--c
Confidence 11111 112234667777777643 34569999999999 5678999999998 4
Q ss_pred cCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCccc-HHHHHhcCCCCCHHHHHHHH
Q 009974 208 QNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVD-VKAIARGTPGFNGADLANLV 286 (521)
Q Consensus 208 ~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~-l~~la~~~~g~s~~dl~~lv 286 (521)
+...|++|.+|..+..+++.+++ |+ .++.|..-+.++....+..++.+.++..+.+ +..+++...| |.+|...++
T Consensus 146 PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslL 221 (515)
T COG2812 146 PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLL 221 (515)
T ss_pred CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHH
Confidence 67789999999999999999988 77 4778899999999999999998887765444 7777887776 899999999
Q ss_pred HHHHHHHHHhCCCccCHHHHHHH
Q 009974 287 NIAAIKAAVDGGEKLTATELEFA 309 (521)
Q Consensus 287 ~~A~~~a~~~~~~~it~~~~~~a 309 (521)
+++.... ...||.+.+...
T Consensus 222 Dq~i~~~----~~~It~~~v~~~ 240 (515)
T COG2812 222 DQAIAFG----EGEITLESVRDM 240 (515)
T ss_pred HHHHHcc----CCcccHHHHHHH
Confidence 9876543 256777666543
No 120
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=3.1e-14 Score=154.59 Aligned_cols=213 Identities=14% Similarity=0.201 Sum_probs=144.7
Q ss_pred CCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE----------
Q 009974 71 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY---------- 140 (521)
Q Consensus 71 ~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~---------- 140 (521)
..+.+|++|+|++.+++.|++.+. ..+.|.++||+||+|||||++|+++|+.+++.--.
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~-----------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLR-----------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 344699999999999999888765 34677789999999999999999999998763100
Q ss_pred EeCchh---hh----------hhhh---hhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHH
Q 009974 141 RAGSEF---EE----------MFVG---VGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 200 (521)
Q Consensus 141 i~~~~~---~~----------~~~g---~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll 200 (521)
-.|... .. .+.+ .+...++.+.+.+.. +...|++|||+|.+. ....+.|+
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt----------~~a~naLL 148 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS----------TAAFNAFL 148 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC----------HHHHHHHH
Confidence 011110 00 0111 123455555555422 234599999999982 34577888
Q ss_pred HhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCH
Q 009974 201 VEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNG 279 (521)
Q Consensus 201 ~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~ 279 (521)
..++.. ...+++|.+|+.+..|.+.+++ |. ..+.|..++.++....+...+...+.. ++..+..++..+.| +.
T Consensus 149 K~LEeP--p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G-dl 222 (620)
T PRK14954 149 KTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG-SM 222 (620)
T ss_pred HHHhCC--CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CH
Confidence 888853 3345666666777888888877 66 589999999999998888887765542 44457777877764 67
Q ss_pred HHHHHHHHHHHHHHHH-hCCCccCHHHHHHHH
Q 009974 280 ADLANLVNIAAIKAAV-DGGEKLTATELEFAK 310 (521)
Q Consensus 280 ~dl~~lv~~A~~~a~~-~~~~~it~~~~~~a~ 310 (521)
+++.+.++.....+.. .....||.+++.+.+
T Consensus 223 r~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 223 RDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 7777776655444311 235678888776654
No 121
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.60 E-value=2.2e-14 Score=160.40 Aligned_cols=219 Identities=21% Similarity=0.254 Sum_probs=144.1
Q ss_pred Cccc-ccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh-----
Q 009974 75 TFKD-VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE----- 148 (521)
Q Consensus 75 ~f~d-i~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~----- 148 (521)
.++. ..|++++|+++.+++....... ......++|+||||||||++++.+|+.++.+++.++++...+
T Consensus 319 ~l~~~~~g~~~vK~~i~~~l~~~~~~~------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~ 392 (784)
T PRK10787 319 ILDTDHYGLERVKDRILEYLAVQSRVN------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIR 392 (784)
T ss_pred HhhhhccCHHHHHHHHHHHHHHHHhcc------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhc
Confidence 3444 8999999999998877543211 112236999999999999999999999999999888765432
Q ss_pred ----hhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhc-----C--------ccCCc
Q 009974 149 ----MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG-----F--------EQNEG 211 (521)
Q Consensus 149 ----~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~-----~--------~~~~~ 211 (521)
.|.|.....+...+..+....| |++|||+|.+...... . ....|+..+|. + .+-++
T Consensus 393 g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g---~---~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 393 GHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG---D---PASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred cchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC---C---HHHHHHHHhccccEEEEecccccccccCCc
Confidence 3555555556666665544444 8999999999654221 1 23455555542 1 12367
Q ss_pred eEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccC-----CCC------CcccHHHHHh-cCCCCCH
Q 009974 212 IILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK-----PLA------DDVDVKAIAR-GTPGFNG 279 (521)
Q Consensus 212 vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~-----~~~------~~~~l~~la~-~~~g~s~ 279 (521)
+++|+|+|.. .|+++|++ ||. .|.+..++.++..+|++.|+... .+. ++..+..+++ .+..+-.
T Consensus 466 v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~Ga 541 (784)
T PRK10787 466 VMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGV 541 (784)
T ss_pred eEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCC
Confidence 9999999987 59999998 994 88999999999999999998421 111 1222444543 2333445
Q ss_pred HHHHHHHHHHHHHHHH----hCC---CccCHHHHHHHH
Q 009974 280 ADLANLVNIAAIKAAV----DGG---EKLTATELEFAK 310 (521)
Q Consensus 280 ~dl~~lv~~A~~~a~~----~~~---~~it~~~~~~a~ 310 (521)
|.|+..++........ .+. -.|+.+++.+.+
T Consensus 542 R~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~l 579 (784)
T PRK10787 542 RSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYL 579 (784)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHh
Confidence 5666555544433332 222 256777766544
No 122
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=4.2e-14 Score=154.34 Aligned_cols=207 Identities=16% Similarity=0.218 Sum_probs=143.1
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE----EeCc-
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY----RAGS- 144 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~----i~~~- 144 (521)
+..+.+|++++|++.+++.|...+.. .+.+.++||+||||+|||++|+++|+.+++.... ..|.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~-----------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALIS-----------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 34456999999999999999888863 2345589999999999999999999998763110 0111
Q ss_pred -------------hhh--hhhhhhhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhc
Q 009974 145 -------------EFE--EMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG 205 (521)
Q Consensus 145 -------------~~~--~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~ 205 (521)
++. ......+...++++...+.. +...|++|||+|.| .....+.|+..++.
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L----------t~~a~naLLK~LEe 147 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML----------STAAFNALLKTLEE 147 (620)
T ss_pred cHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc----------CHHHHHHHHHHHhc
Confidence 000 00112334567777776643 23469999999999 34567888998884
Q ss_pred CccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHH
Q 009974 206 FEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLAN 284 (521)
Q Consensus 206 ~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~ 284 (521)
....+++|.+|+.++.+.+.+++ |+ ..+.|+.++.++....+...+.+.+.. ++..+..++..+.| +.+++.+
T Consensus 148 --Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~lr~A~~ 221 (620)
T PRK14948 148 --PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GLRDAES 221 (620)
T ss_pred --CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 44567777788888888888887 77 578898999888888887777664433 23446777777765 5677777
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHH
Q 009974 285 LVNIAAIKAAVDGGEKLTATELEF 308 (521)
Q Consensus 285 lv~~A~~~a~~~~~~~it~~~~~~ 308 (521)
+++..... ...||.+++.+
T Consensus 222 lLeklsL~-----~~~It~e~V~~ 240 (620)
T PRK14948 222 LLDQLSLL-----PGPITPEAVWD 240 (620)
T ss_pred HHHHHHhc-----cCCCCHHHHHH
Confidence 77654332 13577666553
No 123
>PRK05642 DNA replication initiation factor; Validated
Probab=99.60 E-value=1.1e-13 Score=134.36 Aligned_cols=179 Identities=20% Similarity=0.204 Sum_probs=125.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK 186 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~ 186 (521)
.++++||||+|||||+|++++++++ +..+++++..++.... ..+.+..... .+|+|||++.+.++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQY--ELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhhC--CEEEEechhhhcCCh-
Confidence 3579999999999999999998754 5778888887765431 1223333322 489999999884431
Q ss_pred CCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCC---CccccCCCccc--eEEecCCCCHHHHHHHHHHHhccCCC
Q 009974 187 QWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL---DPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPL 261 (521)
Q Consensus 187 ~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~l---d~al~r~gRf~--~~i~~~~P~~~~r~~il~~~l~~~~~ 261 (521)
.....|+..++....+.+.++++++..|..+ .+.+.+ ||. ..+.+..|+.+++..+++..+...++
T Consensus 114 -------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~ 184 (234)
T PRK05642 114 -------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGL 184 (234)
T ss_pred -------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCC
Confidence 1223444445544455566777777666433 577877 885 57788999999999999966655444
Q ss_pred C-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009974 262 A-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 262 ~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
. ++..++.+++...+ +.+.+..+++.... +....++.||..-+++++
T Consensus 185 ~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~-~~l~~~~~it~~~~~~~L 232 (234)
T PRK05642 185 HLTDEVGHFILTRGTR-SMSALFDLLERLDQ-ASLQAQRKLTIPFLKETL 232 (234)
T ss_pred CCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH-HHHHcCCcCCHHHHHHHh
Confidence 3 34447778887774 89999999986654 455555789998887765
No 124
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.60 E-value=4.8e-14 Score=143.31 Aligned_cols=206 Identities=22% Similarity=0.269 Sum_probs=136.9
Q ss_pred ccCCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC-----CCEEEE
Q 009974 67 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG-----VPFFYR 141 (521)
Q Consensus 67 ~~~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~-----~~~~~i 141 (521)
+.+...+.+|+|++|++++++.+...+.. ...| +++|+||||||||++++++++++. .+++.+
T Consensus 7 w~~kyrP~~~~~~~g~~~~~~~l~~~i~~-----------~~~~-~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~ 74 (319)
T PRK00440 7 WVEKYRPRTLDEIVGQEEIVERLKSYVKE-----------KNMP-HLLFAGPPGTGKTTAALALARELYGEDWRENFLEL 74 (319)
T ss_pred cchhhCCCcHHHhcCcHHHHHHHHHHHhC-----------CCCC-eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEe
Confidence 44555667999999999999888887741 1223 589999999999999999999873 345555
Q ss_pred eCchhhhhhhhhhhHHHHHHHHH-HHh-----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEE
Q 009974 142 AGSEFEEMFVGVGARRVRSLFQA-AKK-----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILM 215 (521)
Q Consensus 142 ~~~~~~~~~~g~~~~~i~~~f~~-a~~-----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI 215 (521)
++++... ...++..+.. +.. ..+.+|+|||+|.+.. ...+.|+..++....+ ..+|
T Consensus 75 ~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~----------~~~~~L~~~le~~~~~--~~lI 136 (319)
T PRK00440 75 NASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS----------DAQQALRRTMEMYSQN--TRFI 136 (319)
T ss_pred ccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH----------HHHHHHHHHHhcCCCC--CeEE
Confidence 5443211 1111121111 111 2346999999998832 2334566666654333 4555
Q ss_pred eecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 009974 216 AATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAA 294 (521)
Q Consensus 216 ~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~ 294 (521)
.++|.+..+.+.+.+ |+. .+.+++|+.++...+++.++...+.. ++..+..++..+.| +.+.+.+.++.+..
T Consensus 137 l~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~~--- 209 (319)
T PRK00440 137 LSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAAA--- 209 (319)
T ss_pred EEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH---
Confidence 567777777777776 775 68999999999999999998776543 34457788876654 55655555554332
Q ss_pred HhCCCccCHHHHHHHHH
Q 009974 295 VDGGEKLTATELEFAKD 311 (521)
Q Consensus 295 ~~~~~~it~~~~~~a~~ 311 (521)
....||.+++..++.
T Consensus 210 --~~~~it~~~v~~~~~ 224 (319)
T PRK00440 210 --TGKEVTEEAVYKITG 224 (319)
T ss_pred --cCCCCCHHHHHHHhC
Confidence 246899999987653
No 125
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.59 E-value=1e-13 Score=141.99 Aligned_cols=228 Identities=19% Similarity=0.241 Sum_probs=159.3
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeCc
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGS 144 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~-----~~~~~~i~~~ 144 (521)
-.+.-+|++++.-+.-.....-.......+. .....++||||+|.|||+|++|++++. +..+++++..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g-------~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENPG-------GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhccC-------CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 3445689997765543322222222222221 133469999999999999999999876 3458899998
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCC
Q 009974 145 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 224 (521)
Q Consensus 145 ~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~l 224 (521)
.|...++......-..-|+.-. .-.+++|||++.+.++. .+...++..++.+....+-+|+++...|..+
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~--------~~qeefFh~FN~l~~~~kqIvltsdr~P~~l 222 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKE--------RTQEEFFHTFNALLENGKQIVLTSDRPPKEL 222 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCCh--------hHHHHHHHHHHHHHhcCCEEEEEcCCCchhh
Confidence 8887766554443334455544 33599999999996652 2344455555544455666777777777655
Q ss_pred ---CccccCCCccce--EEecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 009974 225 ---DPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQDKPLAD-DVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGG 298 (521)
Q Consensus 225 ---d~al~r~gRf~~--~i~~~~P~~~~r~~il~~~l~~~~~~~-~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~ 298 (521)
.+.|.+ ||.. .+.+.+|+.+.|..|++..+...++.- +.-...++.... -+.+++..++++....+...+
T Consensus 223 ~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~- 298 (408)
T COG0593 223 NGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTK- 298 (408)
T ss_pred ccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcC-
Confidence 477877 9876 778899999999999999887666553 333667777665 489999999998887776655
Q ss_pred CccCHHHHHHHHHHHhcCcc
Q 009974 299 EKLTATELEFAKDRILMGTE 318 (521)
Q Consensus 299 ~~it~~~~~~a~~~~~~~~~ 318 (521)
..||.+.+.+++........
T Consensus 299 ~~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 299 RAITIDLVKEILKDLLRAGE 318 (408)
T ss_pred ccCcHHHHHHHHHHhhcccc
Confidence 49999999999998776544
No 126
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.59 E-value=8.5e-14 Score=137.47 Aligned_cols=186 Identities=20% Similarity=0.228 Sum_probs=116.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCch------hhhhhhhhhhHHH-HH-------------------HHHH
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE------FEEMFVGVGARRV-RS-------------------LFQA 164 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~------~~~~~~g~~~~~i-~~-------------------~f~~ 164 (521)
.++||+||||||||++|+++|+.+|.|++.++|.. +...+.+.....+ .. .+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 36999999999999999999999999999998754 2222221111111 10 1111
Q ss_pred HHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcC--------------ccCCceEEEeecCCCC-----CCC
Q 009974 165 AKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--------------EQNEGIILMAATNLPD-----ILD 225 (521)
Q Consensus 165 a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~--------------~~~~~vivI~ttn~~~-----~ld 225 (521)
|.. .+.+|+|||+|.+. ..+.+.|+..++.- ..+.++.||+|+|... .++
T Consensus 102 A~~-~g~~lllDEi~r~~----------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~ 170 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRSK----------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQ 170 (262)
T ss_pred HHH-cCCEEEEcchhhCC----------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceeccc
Confidence 222 23599999999972 34455555555421 1224678999999763 568
Q ss_pred ccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHH---HhcC----CCCCHHHHHHHHHHHHHHHHHhCC
Q 009974 226 PALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAI---ARGT----PGFNGADLANLVNIAAIKAAVDGG 298 (521)
Q Consensus 226 ~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~l---a~~~----~g~s~~dl~~lv~~A~~~a~~~~~ 298 (521)
+++++ || ..+.++.|+.++-.+|++.+.. .. +...+.+ +..+ .-..++ ++..+.-+...+.....
T Consensus 171 ~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~-~~~~~~iv~~~~~~R~~~~~~~~~-~r~~i~~~~~~~~~~~~ 242 (262)
T TIGR02640 171 DALLD--RL-ITIFMDYPDIDTETAILRAKTD---VA-EDSAATIVRLVREFRASGDEITSG-LRASLMIAEVATQQDIP 242 (262)
T ss_pred HHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CC-HHHHHHHHHHHHHHHhhCCccCCc-HHHHHHHHHHHHHcCCC
Confidence 88998 98 6899999999999999998752 21 1111111 1111 111122 45555544455555567
Q ss_pred CccCHHHHHHHHHHHhc
Q 009974 299 EKLTATELEFAKDRILM 315 (521)
Q Consensus 299 ~~it~~~~~~a~~~~~~ 315 (521)
..++.+|+.+.+..++.
T Consensus 243 ~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 243 VDVDDEDFVDLCIDILA 259 (262)
T ss_pred CCCCcHHHHHHHHHHhc
Confidence 78888888887766553
No 127
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=5.4e-14 Score=153.72 Aligned_cols=203 Identities=18% Similarity=0.243 Sum_probs=141.8
Q ss_pred CCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE------------
Q 009974 71 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF------------ 138 (521)
Q Consensus 71 ~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~------------ 138 (521)
..+.+|+||+|++.+++.|+..+.. .+.++.+|||||||+|||++|+++|+.+++..
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 3456999999999999999887762 34566789999999999999999999876422
Q ss_pred -------------EEEeCchhhhhhhhhhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHH
Q 009974 139 -------------FYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 201 (521)
Q Consensus 139 -------------~~i~~~~~~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~ 201 (521)
+.++... ..+...++.+.+.+.. ....|+||||+|.|. ...++.|+.
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~----------~~a~naLLk 142 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS----------TAAFNALLK 142 (585)
T ss_pred HHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC----------HHHHHHHHH
Confidence 1111110 1122344554443332 234699999999982 356778888
Q ss_pred hhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHH
Q 009974 202 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGA 280 (521)
Q Consensus 202 ~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~ 280 (521)
.++.. ...+++|.+++..+.+.+.+++ |+ ..+.|+.++..+...+++..+...+.. ++..+..++..+.| +.+
T Consensus 143 ~LEep--p~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr 216 (585)
T PRK14950 143 TLEEP--PPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMR 216 (585)
T ss_pred HHhcC--CCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88853 3456666667777777777776 66 468899999999999998888766543 33446777777765 888
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009974 281 DLANLVNIAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 281 dl~~lv~~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
++.+.++..... +...||.+++...+
T Consensus 217 ~al~~LekL~~y----~~~~It~e~V~~ll 242 (585)
T PRK14950 217 DAENLLQQLATT----YGGEISLSQVQSLL 242 (585)
T ss_pred HHHHHHHHHHHh----cCCCCCHHHHHHHh
Confidence 888888764432 34679988876643
No 128
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.58 E-value=8.7e-14 Score=132.35 Aligned_cols=192 Identities=20% Similarity=0.327 Sum_probs=136.4
Q ss_pred CCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhh
Q 009974 71 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE 147 (521)
Q Consensus 71 ~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~ 147 (521)
.....+++++|++..|+.|.+....+.. +.+.+++||||++|||||++++++..+. |..++.++..++.
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 3456899999999999999887765432 3466799999999999999999999866 6778888877665
Q ss_pred hhhhhhhhHHHHHHHHHHHh-cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcC--ccCCceEEEeecCCCCCC
Q 009974 148 EMFVGVGARRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--EQNEGIILMAATNLPDIL 224 (521)
Q Consensus 148 ~~~~g~~~~~i~~~f~~a~~-~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~--~~~~~vivI~ttn~~~~l 224 (521)
. +..+++..+. ..+-|||+|++. + ...+.....|...|+|- ....+|++.+|+|+-..+
T Consensus 93 ~---------l~~l~~~l~~~~~kFIlf~DDLs-F--------e~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 93 D---------LPELLDLLRDRPYKFILFCDDLS-F--------EEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred c---------HHHHHHHHhcCCCCEEEEecCCC-C--------CCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 4 3445555443 346799999853 1 11233445666667764 346789999999986443
Q ss_pred Ccccc----------C-----------CCccceEEecCCCCHHHHHHHHHHHhccCCCCCc-ccH----HHHHhcCCCCC
Q 009974 225 DPALT----------R-----------PGRFDRHIVVPNPDVRGRQEILELYLQDKPLADD-VDV----KAIARGTPGFN 278 (521)
Q Consensus 225 d~al~----------r-----------~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~-~~l----~~la~~~~g~s 278 (521)
++... . ..||..++.|.+|+.++-.+|+++++...++.-+ ..+ ...|..-.|.|
T Consensus 155 ~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RS 234 (249)
T PF05673_consen 155 PESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRS 234 (249)
T ss_pred chhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 32111 1 1489999999999999999999999987766544 222 22344455678
Q ss_pred HHHHHHHHHH
Q 009974 279 GADLANLVNI 288 (521)
Q Consensus 279 ~~dl~~lv~~ 288 (521)
|+-..+.++.
T Consensus 235 GRtA~QF~~~ 244 (249)
T PF05673_consen 235 GRTARQFIDD 244 (249)
T ss_pred HHHHHHHHHH
Confidence 8777776653
No 129
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.57 E-value=2.4e-14 Score=144.83 Aligned_cols=214 Identities=24% Similarity=0.327 Sum_probs=132.8
Q ss_pred cCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEEe--C
Q 009974 73 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRA--G 143 (521)
Q Consensus 73 ~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~-------~~~~~~i~--~ 143 (521)
+..|++|+|++++++.|.-.+.. +. -.++||+||||||||++|+++++-+ ++|+-..+ +
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~---~~---------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~ 71 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID---PG---------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPED 71 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc---cC---------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccC
Confidence 45799999999998877653210 10 1379999999999999999999987 33221111 0
Q ss_pred -chh---------------hhhhhhhhhHHH------------------HHHHHHHHhcCCcEEEEccccccccCCcCCC
Q 009974 144 -SEF---------------EEMFVGVGARRV------------------RSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE 189 (521)
Q Consensus 144 -~~~---------------~~~~~g~~~~~i------------------~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~ 189 (521)
.++ .....+.+...+ ...+..+. ..+|||||++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~---~GiL~lDEInrl-------- 140 (334)
T PRK13407 72 CPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARAN---RGYLYIDEVNLL-------- 140 (334)
T ss_pred CcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcC---CCeEEecChHhC--------
Confidence 000 000000000000 01111111 249999999998
Q ss_pred cccHHHHHHHHHhhhcCc-----------cCCceEEEeecCCCC-CCCccccCCCccceEEecCCCCH-HHHHHHHHHHh
Q 009974 190 GHTKKTLHQLLVEMDGFE-----------QNEGIILMAATNLPD-ILDPALTRPGRFDRHIVVPNPDV-RGRQEILELYL 256 (521)
Q Consensus 190 ~~~~~~l~~ll~~l~~~~-----------~~~~vivI~ttn~~~-~ld~al~r~gRf~~~i~~~~P~~-~~r~~il~~~l 256 (521)
...++..|+..|+.-. ...++++++++|..+ .++++++. ||...+.++.|.. ++|.++++...
T Consensus 141 --~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 141 --EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred --CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 3456666776665321 235689999988654 58888888 9999999998866 89999998754
Q ss_pred ccCC----C------C--------------------CcccH---HHHHhcCCCCC-HHHHHHHHHHHHHHHHHhCCCccC
Q 009974 257 QDKP----L------A--------------------DDVDV---KAIARGTPGFN-GADLANLVNIAAIKAAVDGGEKLT 302 (521)
Q Consensus 257 ~~~~----~------~--------------------~~~~l---~~la~~~~g~s-~~dl~~lv~~A~~~a~~~~~~~it 302 (521)
.... . . ++... ..++..+.--+ -+++. +++.|...|..+|++.|+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~V~ 295 (334)
T PRK13407 217 AYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEAVG 295 (334)
T ss_pred cccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCeeC
Confidence 2210 0 0 01111 12222222113 34454 889999999999999999
Q ss_pred HHHHHHHHHHHh
Q 009974 303 ATELEFAKDRIL 314 (521)
Q Consensus 303 ~~~~~~a~~~~~ 314 (521)
.+|+..+..-++
T Consensus 296 ~~Di~~~~~~vl 307 (334)
T PRK13407 296 RSHLRSVATMAL 307 (334)
T ss_pred HHHHHHHHHHhh
Confidence 999987765444
No 130
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.57 E-value=8.4e-14 Score=144.93 Aligned_cols=223 Identities=25% Similarity=0.293 Sum_probs=136.2
Q ss_pred CCCCcCCccc-ccCcHHHHHHHHHHHHH-hcCchhhhh---cCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 009974 69 PEKNVKTFKD-VKGCDDAKQELVEVVEY-LKNPSKFTR---LGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 143 (521)
Q Consensus 69 ~~~~~~~f~d-i~G~~~~k~~L~~~v~~-l~~~~~~~~---~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~ 143 (521)
|......+++ |+|++++|+.|...+.. ++....... .......++||+||||||||++|+++|+.++.||+.+++
T Consensus 62 p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~ 141 (412)
T PRK05342 62 PKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADA 141 (412)
T ss_pred HHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecch
Confidence 4444455665 89999999999776532 111100000 011134689999999999999999999999999999999
Q ss_pred chhhh-hhhhhhhHH-HHHHHHHH----HhcCCcEEEEccccccccCCcCCC----cccHHHHHHHHHhhhcCc------
Q 009974 144 SEFEE-MFVGVGARR-VRSLFQAA----KKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFE------ 207 (521)
Q Consensus 144 ~~~~~-~~~g~~~~~-i~~~f~~a----~~~~p~Il~IDEiD~l~~~~~~~~----~~~~~~l~~ll~~l~~~~------ 207 (521)
+.+.. .|+|..... +..++..+ ....++||||||||.+..+....+ -....+++.||..|++..
T Consensus 142 ~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~ 221 (412)
T PRK05342 142 TTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQ 221 (412)
T ss_pred hhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCC
Confidence 88753 566664333 34444322 234578999999999976532211 122457778888887531
Q ss_pred -----cCCceEEEeecCCCC----------------------------------------------------CCCccccC
Q 009974 208 -----QNEGIILMAATNLPD----------------------------------------------------ILDPALTR 230 (521)
Q Consensus 208 -----~~~~vivI~ttn~~~----------------------------------------------------~ld~al~r 230 (521)
.....++|.|+|-.. .+.|.++
T Consensus 222 gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl- 300 (412)
T PRK05342 222 GGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI- 300 (412)
T ss_pred CCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh-
Confidence 112345555555400 0123333
Q ss_pred CCccceEEecCCCCHHHHHHHHHH----Hhc-------cCCCC---CcccHHHHHhc--CCCCCHHHHHHHHHHHHHHH
Q 009974 231 PGRFDRHIVVPNPDVRGRQEILEL----YLQ-------DKPLA---DDVDVKAIARG--TPGFNGADLANLVNIAAIKA 293 (521)
Q Consensus 231 ~gRf~~~i~~~~P~~~~r~~il~~----~l~-------~~~~~---~~~~l~~la~~--~~g~s~~dl~~lv~~A~~~a 293 (521)
||++.++.|.+.+.++..+|+.. .++ ..+.. ++..+..|++. ...+-.|.|+.+++....-.
T Consensus 301 -gRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~ 378 (412)
T PRK05342 301 -GRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDV 378 (412)
T ss_pred -CCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHH
Confidence 58999999999999999998873 222 12221 22224556653 33444566666666554433
No 131
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.57 E-value=4.4e-14 Score=135.60 Aligned_cols=198 Identities=22% Similarity=0.321 Sum_probs=126.2
Q ss_pred cCCccccc-Cc--HHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeCc
Q 009974 73 VKTFKDVK-GC--DDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGS 144 (521)
Q Consensus 73 ~~~f~di~-G~--~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~-----~~~~~~i~~~ 144 (521)
.-||++++ |. ..+....+.+.. .+. .....++||||+|+|||+|.++++++. +..++++++.
T Consensus 4 ~~tFdnfv~g~~N~~a~~~~~~ia~---~~~-------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~ 73 (219)
T PF00308_consen 4 KYTFDNFVVGESNELAYAAAKAIAE---NPG-------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE 73 (219)
T ss_dssp T-SCCCS--TTTTHHHHHHHHHHHH---STT-------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH
T ss_pred CCccccCCcCCcHHHHHHHHHHHHh---cCC-------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH
Confidence 35888885 52 333333333333 121 122369999999999999999999864 5779999999
Q ss_pred hhhhhhhhhhhH-HHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCC
Q 009974 145 EFEEMFVGVGAR-RVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 223 (521)
Q Consensus 145 ~~~~~~~g~~~~-~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ 223 (521)
+|...+...... .+..+....+ ...+|+||++|.+..+ ..+...++..++.+..+.+.+|+++...|..
T Consensus 74 ~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~--------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 74 EFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK--------QRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH--------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred HHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc--------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 988766543322 2223223333 3469999999999542 2344555555555555666677777677765
Q ss_pred C---CccccCCCccce--EEecCCCCHHHHHHHHHHHhccCCCCCccc-HHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 009974 224 L---DPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQDKPLADDVD-VKAIARGTPGFNGADLANLVNIAAIKA 293 (521)
Q Consensus 224 l---d~al~r~gRf~~--~i~~~~P~~~~r~~il~~~l~~~~~~~~~~-l~~la~~~~g~s~~dl~~lv~~A~~~a 293 (521)
+ ++.+.+ ||.. .+.+.+|+.+.|.+|++..+...++.-+.+ +..+++... .+.++|..++++....+
T Consensus 144 l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 144 LSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAYA 216 (219)
T ss_dssp TTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred ccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHHh
Confidence 4 566666 8765 889999999999999999998877664444 566777765 48999999998766554
No 132
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.3e-13 Score=139.65 Aligned_cols=215 Identities=22% Similarity=0.317 Sum_probs=152.4
Q ss_pred ccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-----EEEEeCchhhhhhh--
Q 009974 79 VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-----FFYRAGSEFEEMFV-- 151 (521)
Q Consensus 79 i~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~-----~~~i~~~~~~~~~~-- 151 (521)
+.+.++..+++..++...- ....|.++++|||||||||.+++.+++++.-+ ++++||....+.+.
T Consensus 19 l~~Re~ei~~l~~~l~~~~--------~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~ 90 (366)
T COG1474 19 LPHREEEINQLASFLAPAL--------RGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVL 90 (366)
T ss_pred ccccHHHHHHHHHHHHHHh--------cCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHH
Confidence 7889988888877765422 23455679999999999999999999987544 89999976644321
Q ss_pred -------------hhhh-HHHHHHHHHHHh-cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEe
Q 009974 152 -------------GVGA-RRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMA 216 (521)
Q Consensus 152 -------------g~~~-~~i~~~f~~a~~-~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ 216 (521)
|... +....+++.... ....||++||+|.|..+.+ ..+..|+...+.. ..++.+|+
T Consensus 91 ~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-------~~LY~L~r~~~~~--~~~v~vi~ 161 (366)
T COG1474 91 SKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-------EVLYSLLRAPGEN--KVKVSIIA 161 (366)
T ss_pred HHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-------hHHHHHHhhcccc--ceeEEEEE
Confidence 1111 222333333333 4467999999999976532 6777777766644 66789999
Q ss_pred ecCCCC---CCCccccCCCccc-eEEecCCCCHHHHHHHHHHHhccC---CCCCcccHHHHH---hcCCCCCHHHHHHHH
Q 009974 217 ATNLPD---ILDPALTRPGRFD-RHIVVPNPDVRGRQEILELYLQDK---PLADDVDVKAIA---RGTPGFNGADLANLV 286 (521)
Q Consensus 217 ttn~~~---~ld~al~r~gRf~-~~i~~~~P~~~~r~~il~~~l~~~---~~~~~~~l~~la---~~~~g~s~~dl~~lv 286 (521)
.+|..+ .+|+.+.+ +|. ..|.|++++.+|...|++...+.. +.-++.-++.+| ....| +.+-.-.++
T Consensus 162 i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidil 238 (366)
T COG1474 162 VSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDIL 238 (366)
T ss_pred EeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHHH
Confidence 999864 67888877 553 368999999999999999987642 111222233333 33333 666677889
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHHHHH
Q 009974 287 NIAAIKAAVDGGEKLTATELEFAKDRI 313 (521)
Q Consensus 287 ~~A~~~a~~~~~~~it~~~~~~a~~~~ 313 (521)
+.|...|.+++...++.+++..|...+
T Consensus 239 r~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 239 RRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred HHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 999999999999999999999995543
No 133
>PRK06620 hypothetical protein; Validated
Probab=99.56 E-value=9e-14 Score=132.84 Aligned_cols=196 Identities=13% Similarity=0.147 Sum_probs=125.9
Q ss_pred CCCcCCcccccCcH---HHHHHHHHHHHHhcCchhhhhcCCCC-CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCch
Q 009974 70 EKNVKTFKDVKGCD---DAKQELVEVVEYLKNPSKFTRLGGKL-PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 145 (521)
Q Consensus 70 ~~~~~~f~di~G~~---~~k~~L~~~v~~l~~~~~~~~~g~~~-p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~ 145 (521)
..+.-+|++++-.+ .+...++++.. .+ +..+ -+.++||||||||||+|++++++..+..++. ...
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~---~~------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~ 77 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQC---GF------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF 77 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHH---cc------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh
Confidence 33445788876554 23334443332 11 1112 1579999999999999999999988753322 111
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCC--
Q 009974 146 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI-- 223 (521)
Q Consensus 146 ~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~-- 223 (521)
.. ...+ ....+|+|||||.+ ....+-.++ +.+..+.+.++++++..|..
T Consensus 78 ~~-----------~~~~-----~~~d~lliDdi~~~----------~~~~lf~l~---N~~~e~g~~ilits~~~p~~l~ 128 (214)
T PRK06620 78 FN-----------EEIL-----EKYNAFIIEDIENW----------QEPALLHIF---NIINEKQKYLLLTSSDKSRNFT 128 (214)
T ss_pred hc-----------hhHH-----hcCCEEEEeccccc----------hHHHHHHHH---HHHHhcCCEEEEEcCCCccccc
Confidence 10 0111 12359999999954 112233333 33334556778887776664
Q ss_pred CCccccCCCccce--EEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 009974 224 LDPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEK 300 (521)
Q Consensus 224 ld~al~r~gRf~~--~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~ 300 (521)
+ +++++ |+.. .+.+.+|+.+++..+++..+...++. ++..++.++....+ +.+.+.++++.....+ ...++.
T Consensus 129 l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~-~~~~~~ 203 (214)
T PRK06620 129 L-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFA-LISKRK 203 (214)
T ss_pred h-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHH-HHcCCC
Confidence 5 67776 8854 78999999999999999888765543 34447778887764 8899999988754333 334467
Q ss_pred cCHHHHHHHH
Q 009974 301 LTATELEFAK 310 (521)
Q Consensus 301 it~~~~~~a~ 310 (521)
||.+.+++++
T Consensus 204 it~~~~~~~l 213 (214)
T PRK06620 204 ITISLVKEVL 213 (214)
T ss_pred CCHHHHHHHh
Confidence 9998887764
No 134
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.56 E-value=1.4e-13 Score=140.67 Aligned_cols=173 Identities=29% Similarity=0.405 Sum_probs=122.2
Q ss_pred cccCcHHHHHHHHHHHHH-hcCchhhhh-cCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh-hhhh-h
Q 009974 78 DVKGCDDAKQELVEVVEY-LKNPSKFTR-LGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-MFVG-V 153 (521)
Q Consensus 78 di~G~~~~k~~L~~~v~~-l~~~~~~~~-~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~-~~~g-~ 153 (521)
-|+|++++|+.+...+.. ++....... .....|+++||+||||||||++|+++|+.++.||+.+++..+.. .|.| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 379999999999876653 222111111 12335789999999999999999999999999999999887753 5666 3
Q ss_pred hhHHHHHHHHHH--------------------------------------------------------------------
Q 009974 154 GARRVRSLFQAA-------------------------------------------------------------------- 165 (521)
Q Consensus 154 ~~~~i~~~f~~a-------------------------------------------------------------------- 165 (521)
.+..++.+|..|
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 444455554443
Q ss_pred -----------------------------------------------------------------------HhcCCcEEE
Q 009974 166 -----------------------------------------------------------------------KKKAPCIIF 174 (521)
Q Consensus 166 -----------------------------------------------------------------------~~~~p~Il~ 174 (521)
+.....|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 001235999
Q ss_pred EccccccccCCcCC--CcccHHHHHHHHHhhhcCc--------cCCceEEEeecC----CCCCCCccccCCCccceEEec
Q 009974 175 IDEIDAVGSTRKQW--EGHTKKTLHQLLVEMDGFE--------QNEGIILMAATN----LPDILDPALTRPGRFDRHIVV 240 (521)
Q Consensus 175 IDEiD~l~~~~~~~--~~~~~~~l~~ll~~l~~~~--------~~~~vivI~ttn----~~~~ld~al~r~gRf~~~i~~ 240 (521)
|||||.++.+.... +-....+.+.||..++|-. ...++++|++.- .|++|=|.|. |||..++.+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEEC
Confidence 99999998765321 2234557788888888732 245688887653 3556666665 599999999
Q ss_pred CCCCHHHHHHHH
Q 009974 241 PNPDVRGRQEIL 252 (521)
Q Consensus 241 ~~P~~~~r~~il 252 (521)
..++.++...||
T Consensus 331 ~~L~~edL~rIL 342 (441)
T TIGR00390 331 QALTTDDFERIL 342 (441)
T ss_pred CCCCHHHHHHHh
Confidence 999999998877
No 135
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.55 E-value=6.9e-14 Score=141.74 Aligned_cols=221 Identities=21% Similarity=0.231 Sum_probs=140.2
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC-------CCEEEEe--
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG-------VPFFYRA-- 142 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~-------~~~~~i~-- 142 (521)
....|++|+|++++|..|...+. +| ...|+||.||+|||||++||+++..+. .||....
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~---~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVI---DP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhcc---CC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 34579999999999888876543 12 224899999999999999999977552 3443000
Q ss_pred ----Cchhhhh-------------------hhhhhhHH------HHHHHHHHH---------hcCCcEEEEccccccccC
Q 009974 143 ----GSEFEEM-------------------FVGVGARR------VRSLFQAAK---------KKAPCIIFIDEIDAVGST 184 (521)
Q Consensus 143 ----~~~~~~~-------------------~~g~~~~~------i~~~f~~a~---------~~~p~Il~IDEiD~l~~~ 184 (521)
++.+... -.|....+ +...|.... .....+|||||++.+.
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~-- 157 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD-- 157 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC--
Confidence 0000000 00111111 111111110 0113599999999993
Q ss_pred CcCCCcccHHHHHHHHHhhhcC-----------ccCCceEEEeecCCCC-CCCccccCCCccceEEecCCCC-HHHHHHH
Q 009974 185 RKQWEGHTKKTLHQLLVEMDGF-----------EQNEGIILMAATNLPD-ILDPALTRPGRFDRHIVVPNPD-VRGRQEI 251 (521)
Q Consensus 185 ~~~~~~~~~~~l~~ll~~l~~~-----------~~~~~vivI~ttn~~~-~ld~al~r~gRf~~~i~~~~P~-~~~r~~i 251 (521)
..+...|+..|+.- ....++++|+|.|..+ .+++++.. ||..++.+..|+ .+.+.+|
T Consensus 158 --------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~i 227 (350)
T CHL00081 158 --------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVKI 227 (350)
T ss_pred --------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHHH
Confidence 34555566665421 1235688888888665 58889988 999999999997 5899999
Q ss_pred HHHHhccC--CC----------------------------CCccc---HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 009974 252 LELYLQDK--PL----------------------------ADDVD---VKAIARGTPGFNGADLANLVNIAAIKAAVDGG 298 (521)
Q Consensus 252 l~~~l~~~--~~----------------------------~~~~~---l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~ 298 (521)
++...... +. -++.. +..++..+.--|++--..+++.|...|+.+|+
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR 307 (350)
T CHL00081 228 VEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGR 307 (350)
T ss_pred HHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCC
Confidence 98754211 00 00111 12233333334677777888889999999999
Q ss_pred CccCHHHHHHHHHHHhcC
Q 009974 299 EKLTATELEFAKDRILMG 316 (521)
Q Consensus 299 ~~it~~~~~~a~~~~~~~ 316 (521)
+.|+.+|+..+..-++..
T Consensus 308 ~~V~pdDv~~~a~~vL~H 325 (350)
T CHL00081 308 TEVTPKDIFKVITLCLRH 325 (350)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999988776653
No 136
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.54 E-value=2.2e-13 Score=139.27 Aligned_cols=172 Identities=28% Similarity=0.398 Sum_probs=123.6
Q ss_pred ccCcHHHHHHHHHHHHH-hcCchhhhhc-CCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh-hhhh-hh
Q 009974 79 VKGCDDAKQELVEVVEY-LKNPSKFTRL-GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-MFVG-VG 154 (521)
Q Consensus 79 i~G~~~~k~~L~~~v~~-l~~~~~~~~~-g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~-~~~g-~~ 154 (521)
|+|++++|+.+...+.. ++........ ....|+++||+||||||||++|+++|+.++.||+.++++.|.. .|.| ..
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 89999999999887743 2211110011 1123689999999999999999999999999999999988875 5777 33
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q 009974 155 ARRVRSLFQAAK-------------------------------------------------------------------- 166 (521)
Q Consensus 155 ~~~i~~~f~~a~-------------------------------------------------------------------- 166 (521)
+..++.+|..|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 455555555550
Q ss_pred --h--------------------------------------------------------------------cCCcEEEEc
Q 009974 167 --K--------------------------------------------------------------------KAPCIIFID 176 (521)
Q Consensus 167 --~--------------------------------------------------------------------~~p~Il~ID 176 (521)
. ....|||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0 023599999
Q ss_pred cccccccCCcCC--CcccHHHHHHHHHhhhcC--------ccCCceEEEeecC----CCCCCCccccCCCccceEEecCC
Q 009974 177 EIDAVGSTRKQW--EGHTKKTLHQLLVEMDGF--------EQNEGIILMAATN----LPDILDPALTRPGRFDRHIVVPN 242 (521)
Q Consensus 177 EiD~l~~~~~~~--~~~~~~~l~~ll~~l~~~--------~~~~~vivI~ttn----~~~~ld~al~r~gRf~~~i~~~~ 242 (521)
|||.++.+.+.. +-....+...||..++|- -...++++||+.- .|++|-|.|. |||..++.+..
T Consensus 257 EiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~~ 334 (443)
T PRK05201 257 EIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVELDA 334 (443)
T ss_pred cchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECCC
Confidence 999998764321 223456778888888873 2245688887643 3566667776 59999999999
Q ss_pred CCHHHHHHHH
Q 009974 243 PDVRGRQEIL 252 (521)
Q Consensus 243 P~~~~r~~il 252 (521)
++.++...||
T Consensus 335 L~~~dL~~IL 344 (443)
T PRK05201 335 LTEEDFVRIL 344 (443)
T ss_pred CCHHHHHHHh
Confidence 9999998877
No 137
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=4e-13 Score=146.75 Aligned_cols=202 Identities=18% Similarity=0.233 Sum_probs=142.4
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC--------------
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------------- 137 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~-------------- 137 (521)
.+.+|+||+|++.+++.|...+. ..+.|+.+|||||+|+|||++|+++|+.+.+.
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~-----------~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIA-----------TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 44699999999999999888876 24567789999999999999999999987642
Q ss_pred -----------EEEEeCchhhhhhhhhhhHHHHHHHHHHHhc----CCcEEEEccccccccCCcCCCcccHHHHHHHHHh
Q 009974 138 -----------FFYRAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 202 (521)
Q Consensus 138 -----------~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~----~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~ 202 (521)
++.+++.+ ..+...++.+...+... ...|++|||+|.+ .....+.|+..
T Consensus 81 C~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L----------s~~a~naLLK~ 144 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML----------SQAAFNAFLKT 144 (614)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccC----------CHHHHHHHHHH
Confidence 22222211 11134566666555432 2359999999998 34567788888
Q ss_pred hhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHhcCCCCCHHH
Q 009974 203 MDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADD-VDVKAIARGTPGFNGAD 281 (521)
Q Consensus 203 l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~-~~l~~la~~~~g~s~~d 281 (521)
|+.. ....++|.+|+.+..|-+.+++ |+ ..+.|.+++.++....++..+...++..+ ..+..++..+.| +.++
T Consensus 145 LEep--p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dlr~ 218 (614)
T PRK14971 145 LEEP--PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GMRD 218 (614)
T ss_pred HhCC--CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 8853 3455666677777888888887 76 57999999999999999988877665533 346778877654 6777
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009974 282 LANLVNIAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 282 l~~lv~~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
+.+.++.....+ +.. |+.+++.+.+
T Consensus 219 al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 219 ALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 777766544332 323 7776665443
No 138
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.53 E-value=2.3e-14 Score=148.50 Aligned_cols=208 Identities=25% Similarity=0.329 Sum_probs=138.3
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhh
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE 148 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~ 148 (521)
..-+|++|+|.++...++.+.+..... .+.+|||.|.+||||..+|+++.+.. +.||+.+||..+.+
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~A~----------tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRIAK----------TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhhcC----------CCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 345899999999998888887775433 34489999999999999999998855 68999999987654
Q ss_pred h-------------hhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhc-----Cc---
Q 009974 149 M-------------FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG-----FE--- 207 (521)
Q Consensus 149 ~-------------~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~-----~~--- 207 (521)
. |.|....--..+|+.|..+ .||+|||..|. ......||..+.. +.
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgemp----------l~LQaKLLRVLQEkei~rvG~t~ 376 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMP----------LPLQAKLLRVLQEKEIERVGGTK 376 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCC----------HHHHHHHHHHHhhceEEecCCCC
Confidence 3 2222222234567666665 89999999882 2334445544432 11
Q ss_pred -cCCceEEEeecCCCCCCCccccCCCccce-------EEecCCCCHHHHHH----HHHHHhcc----CCCC----CcccH
Q 009974 208 -QNEGIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQD----KPLA----DDVDV 267 (521)
Q Consensus 208 -~~~~vivI~ttn~~~~ld~al~r~gRf~~-------~i~~~~P~~~~r~~----il~~~l~~----~~~~----~~~~l 267 (521)
..-.|.||+|||+. +-.++ ..|+|.. ++.+..|..++|.+ +..+|+.+ .+.. .+..+
T Consensus 377 ~~~vDVRIIAATN~n--L~~~i-~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~ 453 (560)
T COG3829 377 PIPVDVRIIAATNRN--LEKMI-AEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDAL 453 (560)
T ss_pred ceeeEEEEEeccCcC--HHHHH-hcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHH
Confidence 13459999999964 22232 2355543 77788898888875 44444432 2111 22235
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 009974 268 KAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 307 (521)
Q Consensus 268 ~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~ 307 (521)
..+.+.-.--+.++|+|++.++...+ .....|+.+|+.
T Consensus 454 ~~L~~y~WPGNVRELeNviER~v~~~--~~~~~I~~~~lp 491 (560)
T COG3829 454 ALLLRYDWPGNVRELENVIERAVNLV--ESDGLIDADDLP 491 (560)
T ss_pred HHHHhCCCCchHHHHHHHHHHHHhcc--CCcceeehhhcc
Confidence 55666554458899999999887633 344558888876
No 139
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.52 E-value=4.2e-13 Score=138.96 Aligned_cols=224 Identities=25% Similarity=0.313 Sum_probs=136.0
Q ss_pred CCCCcCCccc-ccCcHHHHHHHHHHHHH-hcCchh----hhhcCC-CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 69 PEKNVKTFKD-VKGCDDAKQELVEVVEY-LKNPSK----FTRLGG-KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 69 ~~~~~~~f~d-i~G~~~~k~~L~~~v~~-l~~~~~----~~~~g~-~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
|......+++ |+|++++++.+...+.. .+.-.. ....+. ..+.++||+||||||||++|+++|+.++.||..+
T Consensus 68 p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~ 147 (413)
T TIGR00382 68 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIA 147 (413)
T ss_pred HHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence 3333334544 69999999999876632 111100 000011 1135899999999999999999999999999999
Q ss_pred eCchhhh-hhhhhh-hHHHHHHHHHH----HhcCCcEEEEccccccccCCcCCC----cccHHHHHHHHHhhhcCc----
Q 009974 142 AGSEFEE-MFVGVG-ARRVRSLFQAA----KKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFE---- 207 (521)
Q Consensus 142 ~~~~~~~-~~~g~~-~~~i~~~f~~a----~~~~p~Il~IDEiD~l~~~~~~~~----~~~~~~l~~ll~~l~~~~---- 207 (521)
++..+.. .|+|.. ...+..++..+ ....++||||||+|.+..++...+ -....+++.||+.|++..
T Consensus 148 da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~ 227 (413)
T TIGR00382 148 DATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVP 227 (413)
T ss_pred chhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecc
Confidence 9887643 466653 23334443322 233567999999999976543211 112357777887776532
Q ss_pred -------cCCceEEEeecCCC---------------------------C-----------------------CCCccccC
Q 009974 208 -------QNEGIILMAATNLP---------------------------D-----------------------ILDPALTR 230 (521)
Q Consensus 208 -------~~~~vivI~ttn~~---------------------------~-----------------------~ld~al~r 230 (521)
+..+.++|.|+|-. + .+.|+|+
T Consensus 228 ~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl- 306 (413)
T TIGR00382 228 PQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI- 306 (413)
T ss_pred cCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh-
Confidence 12346777777751 0 0223333
Q ss_pred CCccceEEecCCCCHHHHHHHHHHH----hcc-------CCCC---CcccHHHHHhc--CCCCCHHHHHHHHHHHHHHHH
Q 009974 231 PGRFDRHIVVPNPDVRGRQEILELY----LQD-------KPLA---DDVDVKAIARG--TPGFNGADLANLVNIAAIKAA 294 (521)
Q Consensus 231 ~gRf~~~i~~~~P~~~~r~~il~~~----l~~-------~~~~---~~~~l~~la~~--~~g~s~~dl~~lv~~A~~~a~ 294 (521)
||++.++.|.+.+.++..+|+... +++ .+.. ++..+..+++. ...+-.|.|+.++++......
T Consensus 307 -gRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m 385 (413)
T TIGR00382 307 -GRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVM 385 (413)
T ss_pred -CCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHH
Confidence 589999999999999998887653 211 1111 12225556654 334456667777766555443
No 140
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.51 E-value=1.5e-12 Score=127.92 Aligned_cols=99 Identities=19% Similarity=0.190 Sum_probs=79.6
Q ss_pred eEEEeecCC------------CCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCC
Q 009974 212 IILMAATNL------------PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFN 278 (521)
Q Consensus 212 vivI~ttn~------------~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s 278 (521)
-++|.+||+ |..+|..++. |+ ..|...+++.++.++|++..++...+. ++..++.++..-..-|
T Consensus 321 PIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etS 397 (450)
T COG1224 321 PIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETS 397 (450)
T ss_pred cEEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhh
Confidence 467777885 5567777776 66 478888999999999999999776554 3445788888777678
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 009974 279 GADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 313 (521)
Q Consensus 279 ~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~ 313 (521)
-+-.-+++.-|...|.++++..|..+|+++|..-.
T Consensus 398 LRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF 432 (450)
T COG1224 398 LRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELF 432 (450)
T ss_pred HHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHH
Confidence 88888999999999999999999999999987643
No 141
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.51 E-value=3.3e-13 Score=136.87 Aligned_cols=215 Identities=23% Similarity=0.265 Sum_probs=136.7
Q ss_pred CcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-------CCCEE--------
Q 009974 75 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-------GVPFF-------- 139 (521)
Q Consensus 75 ~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~-------~~~~~-------- 139 (521)
-|..|+|++++|..|.-.+- +| ...+++|.|+||+|||++++++++-+ ++|+-
T Consensus 2 pf~~ivgq~~~~~al~~~~~---~~---------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVI---DP---------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhc---CC---------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 48899999999877654332 12 12379999999999999999999866 33322
Q ss_pred -EEeCch---h-------------hhhhhhhhhHHH------H------------HHHHHHHhcCCcEEEEccccccccC
Q 009974 140 -YRAGSE---F-------------EEMFVGVGARRV------R------------SLFQAAKKKAPCIIFIDEIDAVGST 184 (521)
Q Consensus 140 -~i~~~~---~-------------~~~~~g~~~~~i------~------------~~f~~a~~~~p~Il~IDEiD~l~~~ 184 (521)
..+|.. + .+.-.|..+.++ . .++.+|. ..+|||||++.+
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~---~GvL~lDEi~~L--- 143 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARAN---RGILYIDEVNLL--- 143 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceecc---CCEEEecChHhC---
Confidence 001110 0 000000111111 1 1122222 359999999998
Q ss_pred CcCCCcccHHHHHHHHHhhhcC-----------ccCCceEEEeecCCCC-CCCccccCCCccceEEecCCCCH-HHHHHH
Q 009974 185 RKQWEGHTKKTLHQLLVEMDGF-----------EQNEGIILMAATNLPD-ILDPALTRPGRFDRHIVVPNPDV-RGRQEI 251 (521)
Q Consensus 185 ~~~~~~~~~~~l~~ll~~l~~~-----------~~~~~vivI~ttn~~~-~ld~al~r~gRf~~~i~~~~P~~-~~r~~i 251 (521)
...++..|+..|+.- ....++++|+++|..+ .++++++. ||..++.++.|+. ++|.+|
T Consensus 144 -------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eI 214 (337)
T TIGR02030 144 -------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEI 214 (337)
T ss_pred -------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHH
Confidence 234555666666421 1234688888888655 68889998 9999999999875 888898
Q ss_pred HHHHhccC--C------C----------------------CCccc---HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 009974 252 LELYLQDK--P------L----------------------ADDVD---VKAIARGTPGFNGADLANLVNIAAIKAAVDGG 298 (521)
Q Consensus 252 l~~~l~~~--~------~----------------------~~~~~---l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~ 298 (521)
++...... + . -++.. +..++..+..-|++.-..+++.|...|+.+++
T Consensus 215 L~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR 294 (337)
T TIGR02030 215 VERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGR 294 (337)
T ss_pred HHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCC
Confidence 88743210 0 0 01111 22333344333677778888999999999999
Q ss_pred CccCHHHHHHHHHHHhcC
Q 009974 299 EKLTATELEFAKDRILMG 316 (521)
Q Consensus 299 ~~it~~~~~~a~~~~~~~ 316 (521)
+.|+.+|+..+..-++..
T Consensus 295 ~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 295 TEVTVDDIRRVAVLALRH 312 (337)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999988766543
No 142
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.49 E-value=2.6e-13 Score=150.82 Aligned_cols=166 Identities=22% Similarity=0.311 Sum_probs=115.5
Q ss_pred cccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh-----hhhh
Q 009974 78 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-----MFVG 152 (521)
Q Consensus 78 di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~-----~~~g 152 (521)
.|+|++++++.+.+.+...+..-. . ..++..++||+||||||||++|+++|+.++.+++.++++++.. .+.|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~--~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG--H-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc--C-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 479999999999998875432110 0 1123347999999999999999999999999999999988743 2223
Q ss_pred hhhHH-----HHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcC--cc-------CCceEEEeec
Q 009974 153 VGARR-----VRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--EQ-------NEGIILMAAT 218 (521)
Q Consensus 153 ~~~~~-----i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~--~~-------~~~vivI~tt 218 (521)
..... -..+....+....+||||||||.+ ...+.+.|++.|+.- .. -.++++|+||
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka----------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~Ts 605 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA----------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhh----------hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeC
Confidence 21111 112223334455689999999998 245677777777632 11 1357899999
Q ss_pred CCC-------------------------CCCCccccCCCccceEEecCCCCHHHHHHHHHHHhcc
Q 009974 219 NLP-------------------------DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD 258 (521)
Q Consensus 219 n~~-------------------------~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~ 258 (521)
|.- ..+.|.++. |+|.++.|++.+.++..+|+..++.+
T Consensus 606 N~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 606 NAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred CcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 932 124466666 99999999999999999988877643
No 143
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.49 E-value=1.3e-12 Score=133.61 Aligned_cols=188 Identities=18% Similarity=0.220 Sum_probs=126.7
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-------CEEEE---
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-------PFFYR--- 141 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~-------~~~~i--- 141 (521)
.+..|++|+|++++++.|...+. ..+.|..+||+||+|+|||++|+.+|+.+.+ |....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~-----------~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYR-----------EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHH-----------cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 45689999999999999998876 3567788999999999999999999998755 21111
Q ss_pred -eCchh-----------h---hhh--------hhhhhHHHHHHHHHHH----hcCCcEEEEccccccccCCcCCCcccHH
Q 009974 142 -AGSEF-----------E---EMF--------VGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKK 194 (521)
Q Consensus 142 -~~~~~-----------~---~~~--------~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~ 194 (521)
+|..+ . ..+ ...+...++.+-+... .+...|++|||+|.+ ...
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l----------~~~ 156 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM----------NRN 156 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc----------CHH
Confidence 11110 0 000 0011233443333222 344569999999999 355
Q ss_pred HHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcC
Q 009974 195 TLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGT 274 (521)
Q Consensus 195 ~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~ 274 (521)
..|.||..++. +..+.++|..|+.++.+.+.+++ |+ ..+.+++|+.++..++++.......+ ++..+..+++.+
T Consensus 157 aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~-~~~~~~~i~~~s 230 (351)
T PRK09112 157 AANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGS-DGEITEALLQRS 230 (351)
T ss_pred HHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCC-CHHHHHHHHHHc
Confidence 67888988886 33445556667888888888887 88 69999999999999999875432221 233355666655
Q ss_pred CCCCHHHHHHHHH
Q 009974 275 PGFNGADLANLVN 287 (521)
Q Consensus 275 ~g~s~~dl~~lv~ 287 (521)
.| +++...++++
T Consensus 231 ~G-~pr~Al~ll~ 242 (351)
T PRK09112 231 KG-SVRKALLLLN 242 (351)
T ss_pred CC-CHHHHHHHHh
Confidence 54 6666555554
No 144
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.47 E-value=3.5e-13 Score=144.35 Aligned_cols=208 Identities=23% Similarity=0.286 Sum_probs=131.9
Q ss_pred CCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHh-----------cCCCEEEEe
Q 009974 74 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE-----------AGVPFFYRA 142 (521)
Q Consensus 74 ~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~-----------~~~~~~~i~ 142 (521)
.+|++++|.+...+++.+.+..+... +.+|||+|++||||+++|+++... .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 46999999999999998888754432 237999999999999999999876 467999999
Q ss_pred Cchhhhhhh-----hhh------h--HHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc--
Q 009974 143 GSEFEEMFV-----GVG------A--RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-- 207 (521)
Q Consensus 143 ~~~~~~~~~-----g~~------~--~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~-- 207 (521)
|..+.+... |.. . ..-..+|+.|..+ .||||||+.|. ......|+..++.-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~Lp----------~~~Q~kLl~~L~e~~~~ 352 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG---TLFLDEIGEMP----------LPLQTRLLRVLEEKEVT 352 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCCC---EEEEcChHhCC----------HHHHHHHHhhhhcCeEE
Confidence 987744321 110 0 0112355555433 89999999993 334455555554211
Q ss_pred -------cCCceEEEeecCCCCCCCccccCCCccce-------EEecCCCCHHHHHH----HHHHHhcc----CCCCCcc
Q 009974 208 -------QNEGIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQD----KPLADDV 265 (521)
Q Consensus 208 -------~~~~vivI~ttn~~~~ld~al~r~gRf~~-------~i~~~~P~~~~r~~----il~~~l~~----~~~~~~~ 265 (521)
...++.+|++||..- . .+...|+|.. .+.+..|...+|.+ ++++|+.+ .+..-..
T Consensus 353 r~G~~~~~~~dvRiIaat~~~L--~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~ 429 (538)
T PRK15424 353 RVGGHQPVPVDVRVISATHCDL--E-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSA 429 (538)
T ss_pred ecCCCceeccceEEEEecCCCH--H-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCH
Confidence 123468999988642 2 2222344442 56677788777764 56666654 2221111
Q ss_pred c--------HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 009974 266 D--------VKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 307 (521)
Q Consensus 266 ~--------l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~ 307 (521)
+ +..+..+..-.+.++|++++++++..+.......++.+++.
T Consensus 430 ~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 430 ALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred HHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 1 13444554445889999999988875433333567777654
No 145
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.47 E-value=6.9e-13 Score=146.25 Aligned_cols=214 Identities=25% Similarity=0.313 Sum_probs=140.0
Q ss_pred CcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc--------------------
Q 009974 75 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-------------------- 134 (521)
Q Consensus 75 ~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~-------------------- 134 (521)
-|.+|+|++.++..|.-... ++. ..+|||+||||||||++|+++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av---~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV---DPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhh---CCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 38899999998876654332 211 1379999999999999999999877
Q ss_pred ---------------CCCEEEEeCchhhhhhhhhh--hHHH--------HHHHHHHHhcCCcEEEEccccccccCCcCCC
Q 009974 135 ---------------GVPFFYRAGSEFEEMFVGVG--ARRV--------RSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE 189 (521)
Q Consensus 135 ---------------~~~~~~i~~~~~~~~~~g~~--~~~i--------~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~ 189 (521)
..||+.+.++.......|.. ...+ ..++..|. ..||||||++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~---~GiL~lDEi~~l-------- 138 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAH---RGILYIDEVNLL-------- 138 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecC---CCeEEeChhhhC--------
Confidence 35677766554433333321 0000 11122222 249999999999
Q ss_pred cccHHHHHHHHHhhhcC-----------ccCCceEEEeecCCC-CCCCccccCCCccceEEecCCCC-HHHHHHHHHHHh
Q 009974 190 GHTKKTLHQLLVEMDGF-----------EQNEGIILMAATNLP-DILDPALTRPGRFDRHIVVPNPD-VRGRQEILELYL 256 (521)
Q Consensus 190 ~~~~~~l~~ll~~l~~~-----------~~~~~vivI~ttn~~-~~ld~al~r~gRf~~~i~~~~P~-~~~r~~il~~~l 256 (521)
...+++.|+..|+.- ....++++|+|+|.. ..+.++|+. ||+.++.++.|. .+++.+++++.+
T Consensus 139 --~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 139 --DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred --CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHH
Confidence 345666777776521 113468999999854 357888888 999999998764 567777776533
Q ss_pred ccCC------------------------------CCCcccHHHHHhcC--CCC-CHHHHHHHHHHHHHHHHHhCCCccCH
Q 009974 257 QDKP------------------------------LADDVDVKAIARGT--PGF-NGADLANLVNIAAIKAAVDGGEKLTA 303 (521)
Q Consensus 257 ~~~~------------------------------~~~~~~l~~la~~~--~g~-s~~dl~~lv~~A~~~a~~~~~~~it~ 303 (521)
.... ..++..+..++..+ .|. +.+....+++.|...|..++++.|+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~ 294 (633)
T TIGR02442 215 AFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTA 294 (633)
T ss_pred hhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCH
Confidence 2100 00111122232221 233 46666778888889999999999999
Q ss_pred HHHHHHHHHHhc
Q 009974 304 TELEFAKDRILM 315 (521)
Q Consensus 304 ~~~~~a~~~~~~ 315 (521)
+|+..|+.-++.
T Consensus 295 ~Dv~~A~~lvL~ 306 (633)
T TIGR02442 295 EDVREAAELVLP 306 (633)
T ss_pred HHHHHHHHHHhh
Confidence 999999988763
No 146
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.46 E-value=2.5e-13 Score=140.98 Aligned_cols=205 Identities=25% Similarity=0.333 Sum_probs=134.6
Q ss_pred CCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhh
Q 009974 74 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF 150 (521)
Q Consensus 74 ~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~ 150 (521)
..+.+++|.+.+.+++.+.+..+...+. +|||+|++||||.++||+|.... +.||+.+||..+....
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a----------~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDA----------SVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCC----------CEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 4688999999999999999988765544 79999999999999999998765 5699999998765432
Q ss_pred h-----hh----h---hHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhc-----Ccc----C
Q 009974 151 V-----GV----G---ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG-----FEQ----N 209 (521)
Q Consensus 151 ~-----g~----~---~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~-----~~~----~ 209 (521)
. |. . ..+-...|+.|..+ .||||||..+. ......||..+.. +.. +
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~mp----------l~~Q~kLLRvLqe~~~~rvG~~~~i~ 274 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEMP----------LELQVKLLRVLQEREFERVGGNKPIK 274 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccCC----------HHHHHHHHHHHHcCeeEecCCCcccc
Confidence 1 11 0 11223356666555 99999999882 3445556655542 211 3
Q ss_pred CceEEEeecCCCCCCCccccCCCccce-------EEecCCCCHHHHHH----HHHHHhcc----CCC-CCcccHHHHHhc
Q 009974 210 EGIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQD----KPL-ADDVDVKAIARG 273 (521)
Q Consensus 210 ~~vivI~ttn~~~~ld~al~r~gRf~~-------~i~~~~P~~~~r~~----il~~~l~~----~~~-~~~~~l~~la~~ 273 (521)
-.|.||++||.. |...+. .|+|.. ++.+..|...+|.+ ++++|+++ .+. ...++-+.++..
T Consensus 275 vdvRiIaaT~~d--L~~~v~-~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L 351 (464)
T COG2204 275 VDVRIIAATNRD--LEEEVA-AGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAAL 351 (464)
T ss_pred eeeEEEeecCcC--HHHHHH-cCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 358999999964 333332 356543 77888899988876 55666543 211 123333344433
Q ss_pred CCCC---CHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 009974 274 TPGF---NGADLANLVNIAAIKAAVDGGEKLTATELE 307 (521)
Q Consensus 274 ~~g~---s~~dl~~lv~~A~~~a~~~~~~~it~~~~~ 307 (521)
+..- +.++|+|+++++. .......|+.+++.
T Consensus 352 ~~y~WPGNVREL~N~ver~~---il~~~~~i~~~~l~ 385 (464)
T COG2204 352 LAYDWPGNVRELENVVERAV---ILSEGPEIEVEDLP 385 (464)
T ss_pred HhCCCChHHHHHHHHHHHHH---hcCCccccchhhcc
Confidence 3333 4555666666554 44466778887764
No 147
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.46 E-value=1.7e-12 Score=145.82 Aligned_cols=167 Identities=25% Similarity=0.356 Sum_probs=117.0
Q ss_pred ccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhh-----hh
Q 009974 77 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-----FV 151 (521)
Q Consensus 77 ~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~-----~~ 151 (521)
+.|+|++++++.+.+.+...+..-. . ..++..++||+||||||||++|+++|+.++.+++.++++++.+. ..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~--~-~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~li 530 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLG--N-PNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLI 530 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCC--C-CCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHh
Confidence 4578999998888887765321100 0 11222358999999999999999999999999999999887542 22
Q ss_pred hhhh-----HHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc---------cCCceEEEee
Q 009974 152 GVGA-----RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGIILMAA 217 (521)
Q Consensus 152 g~~~-----~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~---------~~~~vivI~t 217 (521)
|... .....+....+....+||+|||+|.+ .....+.|++.++... +-.+.++|+|
T Consensus 531 g~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka----------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~T 600 (731)
T TIGR02639 531 GAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA----------HPDIYNILLQVMDYATLTDNNGRKADFRNVILIMT 600 (731)
T ss_pred cCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc----------CHHHHHHHHHhhccCeeecCCCcccCCCCCEEEEC
Confidence 2211 11122334445566689999999988 3456677777776421 1235788999
Q ss_pred cCCCC-------------------------CCCccccCCCccceEEecCCCCHHHHHHHHHHHhcc
Q 009974 218 TNLPD-------------------------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD 258 (521)
Q Consensus 218 tn~~~-------------------------~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~ 258 (521)
||... .+.|.++. |||.++.|.+.+.++..+|++..+.+
T Consensus 601 sn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 601 SNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDE 664 (731)
T ss_pred CCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 98642 13556665 99999999999999999999988753
No 148
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.46 E-value=2.1e-12 Score=132.72 Aligned_cols=185 Identities=17% Similarity=0.185 Sum_probs=125.6
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE-------E-----
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF-------F----- 139 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~-------~----- 139 (521)
.+.+|++|+|++++++.|.+.+. ..+.|..+||+||+|+||+++|.++|+.+-+.- .
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~-----------~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYR-----------SGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 45689999999999999998776 356788999999999999999999999763210 0
Q ss_pred ---EEeCc-----------hhhhhh---hh--------hhhHHHHHHHHHHH----hcCCcEEEEccccccccCCcCCCc
Q 009974 140 ---YRAGS-----------EFEEMF---VG--------VGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEG 190 (521)
Q Consensus 140 ---~i~~~-----------~~~~~~---~g--------~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~ 190 (521)
.-.|. ++.... .+ .....++.+-+.+. .+.|.|++|||+|.+
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m--------- 153 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM--------- 153 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc---------
Confidence 00011 110000 00 11234555444432 345789999999998
Q ss_pred ccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHH
Q 009974 191 HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAI 270 (521)
Q Consensus 191 ~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~l 270 (521)
.....|.|+..++. ...+.++|.+|+.++.+.+.+++ |+ ..+.|++|+.++..+++...... ..+..+..+
T Consensus 154 -~~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~~~l 224 (365)
T PRK07471 154 -NANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPRAAL 224 (365)
T ss_pred -CHHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCHHHHHHH
Confidence 45678889988884 34556777788889888888877 77 68999999999999998876422 112223455
Q ss_pred HhcCCCCCHHHHHHHH
Q 009974 271 ARGTPGFNGADLANLV 286 (521)
Q Consensus 271 a~~~~g~s~~dl~~lv 286 (521)
+..+.| +++...+++
T Consensus 225 ~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 225 AALAEG-SVGRALRLA 239 (365)
T ss_pred HHHcCC-CHHHHHHHh
Confidence 555554 565554444
No 149
>PRK09087 hypothetical protein; Validated
Probab=99.45 E-value=1.4e-12 Score=125.72 Aligned_cols=171 Identities=19% Similarity=0.189 Sum_probs=116.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH 191 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~ 191 (521)
.++|+||+|+|||+|++++++..+.. +++..++...+. ..... .+|+|||+|.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~~~-----------~~~~~---~~l~iDDi~~~~~-------- 101 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSDAA-----------NAAAE---GPVLIEDIDAGGF-------- 101 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchHHH-----------Hhhhc---CeEEEECCCCCCC--------
Confidence 59999999999999999999887655 344333332211 11111 3899999997721
Q ss_pred cHHHHHHHHHhhhcCccCCceEEEeecCCCCC---CCccccCCCccc--eEEecCCCCHHHHHHHHHHHhccCCCC-Ccc
Q 009974 192 TKKTLHQLLVEMDGFEQNEGIILMAATNLPDI---LDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPLA-DDV 265 (521)
Q Consensus 192 ~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~---ld~al~r~gRf~--~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~ 265 (521)
.+. .++..++........+|++++..|.. ..+.+++ ||. ..+.+..|+.++|..+++.++...++. ++.
T Consensus 102 ~~~---~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~e 176 (226)
T PRK09087 102 DET---GLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPH 176 (226)
T ss_pred CHH---HHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 122 24444443334455677776665543 3577777 886 589999999999999999999876554 344
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 009974 266 DVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 313 (521)
Q Consensus 266 ~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~ 313 (521)
.+..|++...+ +.+.+..+++.....+.. .++.||...+++++..+
T Consensus 177 v~~~La~~~~r-~~~~l~~~l~~L~~~~~~-~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 177 VVYYLVSRMER-SLFAAQTIVDRLDRLALE-RKSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHhhh-hHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHhh
Confidence 47788887774 777788777766554444 34779999999888753
No 150
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.45 E-value=7.7e-13 Score=132.09 Aligned_cols=137 Identities=17% Similarity=0.159 Sum_probs=97.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhh--hhhhhhH----------HHHHHHHHHHhcCCcEEEEccc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM--FVGVGAR----------RVRSLFQAAKKKAPCIIFIDEI 178 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~--~~g~~~~----------~i~~~f~~a~~~~p~Il~IDEi 178 (521)
++|||.||||||||++++.+|+.++.|++.+++...... +.|...- -....+..|.. .++++++||+
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechh
Confidence 479999999999999999999999999999988765443 3332110 01123334433 3578999999
Q ss_pred cccccCCcCCCcccHHHHHHHHHh-----hh----cCccCCceEEEeecCCCC------------CCCccccCCCccceE
Q 009974 179 DAVGSTRKQWEGHTKKTLHQLLVE-----MD----GFEQNEGIILMAATNLPD------------ILDPALTRPGRFDRH 237 (521)
Q Consensus 179 D~l~~~~~~~~~~~~~~l~~ll~~-----l~----~~~~~~~vivI~ttn~~~------------~ld~al~r~gRf~~~ 237 (521)
|...+ .....++.+|.. +. .+..+..+.||+|+|... .++++++. ||-.+
T Consensus 144 n~a~p-------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~ 214 (327)
T TIGR01650 144 DAGRP-------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWSIV 214 (327)
T ss_pred hccCH-------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--heeeE
Confidence 98722 234455556542 11 122455789999999854 36788888 99888
Q ss_pred EecCCCCHHHHHHHHHHHhc
Q 009974 238 IVVPNPDVRGRQEILELYLQ 257 (521)
Q Consensus 238 i~~~~P~~~~r~~il~~~l~ 257 (521)
+.++.|+.++-.+|+.....
T Consensus 215 ~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 215 TTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred eeCCCCCHHHHHHHHHhhcc
Confidence 89999999999999987654
No 151
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.44 E-value=2.4e-12 Score=136.51 Aligned_cols=216 Identities=21% Similarity=0.229 Sum_probs=142.0
Q ss_pred ccccCCCCcCCcccccCcHHHHHHHHHHHHHhc---Cchhhhh-------------------cCCCCCceEEEEcCCCCc
Q 009974 65 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLK---NPSKFTR-------------------LGGKLPKGILLTGAPGTG 122 (521)
Q Consensus 65 ~~~~~~~~~~~f~di~G~~~~k~~L~~~v~~l~---~~~~~~~-------------------~g~~~p~~vLL~GppGtG 122 (521)
+.++.+..+..|.|+.|.+.+-+.+..++.... ...++.+ .+.+.-+-+||+||||-|
T Consensus 259 kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlG 338 (877)
T KOG1969|consen 259 KLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLG 338 (877)
T ss_pred ceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCC
Confidence 467788888899999999998888877775421 1111111 122223678999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCchhhhhhhhhhhHHHHHHHHHHH----hcCCcEEEEccccccccCCcCCCcccHHHHHH
Q 009974 123 KTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQ 198 (521)
Q Consensus 123 KT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ 198 (521)
|||||+.+|+++|..++.+|+++-.... ...+++..+...-. ..+|.+|+|||||.-. ...+..
T Consensus 339 KTTLAHViAkqaGYsVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~----------~~~Vdv 406 (877)
T KOG1969|consen 339 KTTLAHVIAKQAGYSVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP----------RAAVDV 406 (877)
T ss_pred hhHHHHHHHHhcCceEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccCCc----------HHHHHH
Confidence 9999999999999999999999865431 11223333222211 2569999999999642 233333
Q ss_pred HHHhhh-------cCcc---------C---CceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccC
Q 009974 199 LLVEMD-------GFEQ---------N---EGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK 259 (521)
Q Consensus 199 ll~~l~-------~~~~---------~---~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~ 259 (521)
++..+. |-.. + -.-.|||.||.. --|+|+.---|..++.|.+|...-..+-|+..+...
T Consensus 407 ilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE 484 (877)
T KOG1969|consen 407 ILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRE 484 (877)
T ss_pred HHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCCChhHHHHHHHHHHhhh
Confidence 333332 1110 0 114678888854 346664322478899999999998889999988877
Q ss_pred CCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC
Q 009974 260 PLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG 297 (521)
Q Consensus 260 ~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~ 297 (521)
++..+ ...|...++ ++..||+..+|.....+....
T Consensus 485 ~mr~d--~~aL~~L~e-l~~~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 485 NMRAD--SKALNALCE-LTQNDIRSCINTLQFLASNVD 519 (877)
T ss_pred cCCCC--HHHHHHHHH-HhcchHHHHHHHHHHHHHhcc
Confidence 76533 334444443 456799999998887765443
No 152
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.43 E-value=2.7e-12 Score=113.78 Aligned_cols=120 Identities=44% Similarity=0.661 Sum_probs=82.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhhhhhhHH---HHHHHHHHHhcCCcEEEEcccccccc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGARR---VRSLFQAAKKKAPCIIFIDEIDAVGS 183 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~g~~~~~---i~~~f~~a~~~~p~Il~IDEiD~l~~ 183 (521)
.++++++||||||||++++.+++.+ +.+++++++.............. ....+.......+.+|+|||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 3579999999999999999999998 89999999887655433222111 12223334445678999999998721
Q ss_pred CCcCCCcccHHHHHHHHHhhhcCcc----CCceEEEeecCCCC--CCCccccCCCccceEEecC
Q 009974 184 TRKQWEGHTKKTLHQLLVEMDGFEQ----NEGIILMAATNLPD--ILDPALTRPGRFDRHIVVP 241 (521)
Q Consensus 184 ~~~~~~~~~~~~l~~ll~~l~~~~~----~~~vivI~ttn~~~--~ld~al~r~gRf~~~i~~~ 241 (521)
.....++..+..... ..++.+|+++|... .+++.+.+ ||+.++.++
T Consensus 99 ----------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 99 ----------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred ----------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 222334444443322 46788888888876 67777776 898777765
No 153
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.42 E-value=6.3e-13 Score=142.55 Aligned_cols=208 Identities=24% Similarity=0.319 Sum_probs=130.4
Q ss_pred CCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhh
Q 009974 74 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF 150 (521)
Q Consensus 74 ~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~ 150 (521)
.+|++++|.++..+.+.+.+..+... +.+|||+|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARS----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 57999999999999988888765432 2379999999999999999998754 6799999998775432
Q ss_pred h-----hhh--------hHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc---------c
Q 009974 151 V-----GVG--------ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------Q 208 (521)
Q Consensus 151 ~-----g~~--------~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~---------~ 208 (521)
. |.. ......+|+.|.. ..||||||+.|. ......|+..++.-. .
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp----------~~~Q~~Ll~~L~~~~~~r~g~~~~~ 345 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMP----------LPLQTRLLRVLEEREVVRVGGTEPV 345 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCC----------HHHHHHHHHHHhcCcEEecCCCcee
Confidence 1 110 0012234555543 389999999993 334445555554211 1
Q ss_pred CCceEEEeecCCCCCCCccccCCCccce-------EEecCCCCHHHHHH----HHHHHhccC----CCC-CcccHHH---
Q 009974 209 NEGIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----PLA-DDVDVKA--- 269 (521)
Q Consensus 209 ~~~vivI~ttn~~~~ld~al~r~gRf~~-------~i~~~~P~~~~r~~----il~~~l~~~----~~~-~~~~l~~--- 269 (521)
..++.+|++||.+-. .+...|+|.. .+.+..|...+|.+ ++.+|+... ... .+..+..
T Consensus 346 ~~dvRiIaat~~~l~---~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~ 422 (526)
T TIGR02329 346 PVDVRVVAATHCALT---TAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAG 422 (526)
T ss_pred eecceEEeccCCCHH---HHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHH
Confidence 224678888886531 1112233332 45666777777654 556666542 111 1112233
Q ss_pred ----HHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 009974 270 ----IARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 307 (521)
Q Consensus 270 ----la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~ 307 (521)
|..+..-.+.++|+++++++...+.......|+.+++.
T Consensus 423 ~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~ 464 (526)
T TIGR02329 423 VADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLR 464 (526)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhh
Confidence 55555555788899999888765432234578887764
No 154
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.42 E-value=2e-12 Score=120.09 Aligned_cols=210 Identities=19% Similarity=0.214 Sum_probs=133.9
Q ss_pred cccCCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-----CEEE
Q 009974 66 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-----PFFY 140 (521)
Q Consensus 66 ~~~~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~-----~~~~ 140 (521)
+++.+..+..+.||+|+++...+|+-+... +..| +++|.|||||||||-+.++|+++=. .++.
T Consensus 16 ~wVeKYrP~~l~dIVGNe~tv~rl~via~~-----------gnmP-~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLE 83 (333)
T KOG0991|consen 16 PWVEKYRPSVLQDIVGNEDTVERLSVIAKE-----------GNMP-NLIISGPPGTGKTTSILCLARELLGDSYKEAVLE 83 (333)
T ss_pred hHHHhhCchHHHHhhCCHHHHHHHHHHHHc-----------CCCC-ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhh
Confidence 356677778999999999999888877652 4455 7999999999999999999998733 3567
Q ss_pred EeCchhhhhhhhhhhHHHHHHHHHHHhc----CCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEe
Q 009974 141 RAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMA 216 (521)
Q Consensus 141 i~~~~~~~~~~g~~~~~i~~~f~~a~~~----~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ 216 (521)
+|+++-.+.-+ .+..-+.|.+-+-. .-.|+++||+|++.. .....|-..|+-+... ..+..
T Consensus 84 LNASdeRGIDv---VRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~----------gAQQAlRRtMEiyS~t--tRFal 148 (333)
T KOG0991|consen 84 LNASDERGIDV---VRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA----------GAQQALRRTMEIYSNT--TRFAL 148 (333)
T ss_pred ccCccccccHH---HHHHHHHHHHhhccCCCCceeEEEeeccchhhh----------HHHHHHHHHHHHHccc--chhhh
Confidence 77776443211 12222345554332 225999999999933 2333444455533333 34556
Q ss_pred ecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 009974 217 ATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-DVDVKAIARGTPGFNGADLANLVNIAAIKAAV 295 (521)
Q Consensus 217 ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~-~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~ 295 (521)
+||..+.+=+.+.+ |+- .+.+...+..+...-+....+...+.. +..++.+.-.. -+|.++.+|.. .+..
T Consensus 149 aCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta----~GDMRQalNnL--Qst~ 219 (333)
T KOG0991|consen 149 ACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTA----QGDMRQALNNL--QSTV 219 (333)
T ss_pred hhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhc----cchHHHHHHHH--HHHh
Confidence 78888877766766 653 445555565655554545554444332 33355555433 35888888764 4556
Q ss_pred hCCCccCHHHHHHHHH
Q 009974 296 DGGEKLTATELEFAKD 311 (521)
Q Consensus 296 ~~~~~it~~~~~~a~~ 311 (521)
.+-..|+.+.+-.+++
T Consensus 220 ~g~g~Vn~enVfKv~d 235 (333)
T KOG0991|consen 220 NGFGLVNQENVFKVCD 235 (333)
T ss_pred ccccccchhhhhhccC
Confidence 6777888877765544
No 155
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.41 E-value=1.1e-12 Score=134.44 Aligned_cols=199 Identities=24% Similarity=0.315 Sum_probs=132.7
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhh
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE 148 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~ 148 (521)
+...+.+|||.+.+..++.+.++.....+. +|||.|.+||||..+||+|.... +.||+++||+.+.+
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~VA~Sd~----------tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVVAKSDS----------TVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHHhcCCC----------eEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 356789999999999999999987665544 79999999999999999998865 67999999988765
Q ss_pred hhhhh-hhHHHHHH-----------HHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHh--hhcCcc----CC
Q 009974 149 MFVGV-GARRVRSL-----------FQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE--MDGFEQ----NE 210 (521)
Q Consensus 149 ~~~g~-~~~~i~~~-----------f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~--l~~~~~----~~ 210 (521)
..... --...+.. |+.|.. ..||+|||..|.- ..+..+...|++ ++.+.. +-
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGelPL-------~lQaKLLRvLQegEieRvG~~r~ikV 357 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGELPL-------ALQAKLLRVLQEGEIERVGGDRTIKV 357 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCC---CeEechhhccCCH-------HHHHHHHHHHhhcceeecCCCceeEE
Confidence 42211 11122223 333333 4899999998832 233333344433 232222 23
Q ss_pred ceEEEeecCCCCCCCccccCCCccce-------EEecCCCCHHHHHH----HHHHHhcc----CCCC----CcccHHHHH
Q 009974 211 GIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQD----KPLA----DDVDVKAIA 271 (521)
Q Consensus 211 ~vivI~ttn~~~~ld~al~r~gRf~~-------~i~~~~P~~~~r~~----il~~~l~~----~~~~----~~~~l~~la 271 (521)
.|.||++||+. |..+. +.|+|.. ++.+..|...+|.+ +.++|+++ .+.. +...++.+.
T Consensus 358 DVRiIAATNRD--L~~~V-~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~ 434 (550)
T COG3604 358 DVRVIAATNRD--LEEMV-RDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLS 434 (550)
T ss_pred EEEEEeccchh--HHHHH-HcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHH
Confidence 48999999964 33333 3366643 66777888888865 44445433 2221 222356666
Q ss_pred hcCCCCCHHHHHHHHHHHHHHH
Q 009974 272 RGTPGFNGADLANLVNIAAIKA 293 (521)
Q Consensus 272 ~~~~g~s~~dl~~lv~~A~~~a 293 (521)
+...--+.+++++++++|+..|
T Consensus 435 ~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 435 SYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred cCCCCCcHHHHHHHHHHHHHHh
Confidence 6655558999999999999887
No 156
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.40 E-value=8.2e-12 Score=126.73 Aligned_cols=169 Identities=14% Similarity=0.260 Sum_probs=118.2
Q ss_pred CcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC--------EEEEeCchh
Q 009974 75 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP--------FFYRAGSEF 146 (521)
Q Consensus 75 ~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~--------~~~i~~~~~ 146 (521)
+|++|+|++.+++.|...+. ..+.|+.+||+||+|+|||++|+++|+.+.+. +..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 69999999999999888774 35667789999999999999999999976432 22222210
Q ss_pred hhhhhhhhhHHHHHHHHHHH----hcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCC
Q 009974 147 EEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 222 (521)
Q Consensus 147 ~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~ 222 (521)
+ ...+...++++.+.+. .+...|++||++|.+ .....|.|+..++. +..++++|.+|+.++
T Consensus 70 -~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m----------~~~a~naLLK~LEe--pp~~t~~il~~~~~~ 134 (313)
T PRK05564 70 -K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM----------TEQAQNAFLKTIEE--PPKGVFIILLCENLE 134 (313)
T ss_pred -C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhc----------CHHHHHHHHHHhcC--CCCCeEEEEEeCChH
Confidence 0 0112344666555432 233469999999998 35577889999985 445556666667788
Q ss_pred CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCC
Q 009974 223 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPG 276 (521)
Q Consensus 223 ~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g 276 (521)
.+.+.+++ |. ..+.|++|+.++....+...+.. . ++.....++..+.|
T Consensus 135 ~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g 182 (313)
T PRK05564 135 QILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDG 182 (313)
T ss_pred hCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCC
Confidence 99999887 77 58999999999988887765532 1 23334555555554
No 157
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.40 E-value=2.6e-11 Score=113.56 Aligned_cols=195 Identities=21% Similarity=0.301 Sum_probs=139.1
Q ss_pred CCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCch
Q 009974 69 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 145 (521)
Q Consensus 69 ~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~ 145 (521)
|..+...+.+|+|.+.+++.|.+....+.. +.+.++|||+|..|||||++++|+-++. +..++.++..+
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 455667899999999999999887766442 3455799999999999999999998876 56788988877
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhc-CCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcC--ccCCceEEEeecCCCC
Q 009974 146 FEEMFVGVGARRVRSLFQAAKKK-APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--EQNEGIILMAATNLPD 222 (521)
Q Consensus 146 ~~~~~~g~~~~~i~~~f~~a~~~-~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~--~~~~~vivI~ttn~~~ 222 (521)
+.. +-.+++..+.. .+-|||.|++- -...+.....|-..++|- ....+|+|.+|+|+-.
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLS---------Fe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLS---------FEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCC---------CCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 654 33455555543 35699999862 122344555666667764 3356799999999875
Q ss_pred CCCcc--------------------ccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcc-cHH----HHHhcCCCC
Q 009974 223 ILDPA--------------------LTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDV-DVK----AIARGTPGF 277 (521)
Q Consensus 223 ~ld~a--------------------l~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~-~l~----~la~~~~g~ 277 (521)
.|+.. +.-+.||...+.|.+++.++-..|+.+++++.+++-+. .++ +.|..-.|.
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~R 265 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGR 265 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 54421 11235999999999999999999999999888776422 121 233445567
Q ss_pred CHHHHHHHHHHH
Q 009974 278 NGADLANLVNIA 289 (521)
Q Consensus 278 s~~dl~~lv~~A 289 (521)
||+-..+.++..
T Consensus 266 SGR~A~QF~~~~ 277 (287)
T COG2607 266 SGRVAWQFIRDL 277 (287)
T ss_pred ccHhHHHHHHHH
Confidence 777777766643
No 158
>PHA02244 ATPase-like protein
Probab=99.40 E-value=1e-11 Score=125.44 Aligned_cols=124 Identities=24% Similarity=0.314 Sum_probs=79.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhh---hhhHHHHHHHHHHHhcCCcEEEEccccccccCCcC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVG---VGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQ 187 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g---~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~ 187 (521)
.++||+||||||||++|+++|..++.||+.++...-.....| ........-|-.+. ..+.+|+|||++.+.+
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p---- 194 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASIP---- 194 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCCH----
Confidence 369999999999999999999999999999885311000111 10011111222222 2346999999998832
Q ss_pred CCcccHHHHHHHHHh-----hh-cCccCCceEEEeecCCC-----------CCCCccccCCCccceEEecCCCCH
Q 009974 188 WEGHTKKTLHQLLVE-----MD-GFEQNEGIILMAATNLP-----------DILDPALTRPGRFDRHIVVPNPDV 245 (521)
Q Consensus 188 ~~~~~~~~l~~ll~~-----l~-~~~~~~~vivI~ttn~~-----------~~ld~al~r~gRf~~~i~~~~P~~ 245 (521)
.....++.++.. .+ ....+.++.+|+|+|.+ ..++++++. || ..++++.|+.
T Consensus 195 ---~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp~~ 263 (383)
T PHA02244 195 ---EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYDEK 263 (383)
T ss_pred ---HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCCcH
Confidence 122333333321 11 11234678999999973 467889998 99 4799999984
No 159
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.39 E-value=1.4e-11 Score=128.53 Aligned_cols=213 Identities=16% Similarity=0.175 Sum_probs=128.0
Q ss_pred cccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEEeCch-hhhhhhhhh
Q 009974 78 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSE-FEEMFVGVG 154 (521)
Q Consensus 78 di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~--~~~~i~~~~-~~~~~~g~~ 154 (521)
.|+|.+++.+.+...+. ...++||+||||||||++|++++...+. +|....+.- ......|..
T Consensus 21 ~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 35788877665554442 1237999999999999999999997643 555544431 112222211
Q ss_pred -hHHH--HHHHHHHHhc---CCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc-------cC-CceEEEeecCC
Q 009974 155 -ARRV--RSLFQAAKKK---APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-------QN-EGIILMAATNL 220 (521)
Q Consensus 155 -~~~i--~~~f~~a~~~---~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~-------~~-~~vivI~ttn~ 220 (521)
.... ..-|.....+ ...+||+|||+.+ ...+++.|+..|+.-. .+ +..++++|||.
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE 156 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccC----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC
Confidence 0110 1223222222 2349999999876 4567778887774211 01 11344455563
Q ss_pred CC---CCCccccCCCccceEEecCCCC-HHHHHHHHHHHhcc--CCCC-----Cccc--------------------HHH
Q 009974 221 PD---ILDPALTRPGRFDRHIVVPNPD-VRGRQEILELYLQD--KPLA-----DDVD--------------------VKA 269 (521)
Q Consensus 221 ~~---~ld~al~r~gRf~~~i~~~~P~-~~~r~~il~~~l~~--~~~~-----~~~~--------------------l~~ 269 (521)
.. ...+++.. ||-..+.+|+|+ .++-.+++...... .... ...+ +..
T Consensus 157 LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~ 234 (498)
T PRK13531 157 LPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQ 234 (498)
T ss_pred CcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHH
Confidence 21 12247777 998899999997 45557777654221 1110 0000 112
Q ss_pred HHh---cC---CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcCc
Q 009974 270 IAR---GT---PGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMGT 317 (521)
Q Consensus 270 la~---~~---~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~~~~~ 317 (521)
+.. .+ ...|+|-...+++.|...|..+|++.++++|+. .+..++...
T Consensus 235 L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HR 287 (498)
T PRK13531 235 LRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHD 287 (498)
T ss_pred HHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccC
Confidence 222 12 237999999999999999999999999999999 666666553
No 160
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.39 E-value=7.2e-12 Score=133.49 Aligned_cols=208 Identities=22% Similarity=0.280 Sum_probs=130.7
Q ss_pred CCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-------------------
Q 009974 74 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA------------------- 134 (521)
Q Consensus 74 ~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~------------------- 134 (521)
..|+|+.|++.+++.+...+. ...+++|.||||||||+++++++..+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~--------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA--------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc--------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 479999999998766554332 12479999999999999999998632
Q ss_pred ---------CCCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhc
Q 009974 135 ---------GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG 205 (521)
Q Consensus 135 ---------~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~ 205 (521)
..||....++.......|.+.......+..|.. .+|||||++.+ ....+..|++.|+.
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~----------~~~~~~~L~~~LE~ 321 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEF----------KRSVLDALREPIED 321 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhC----------CHHHHHHHHHHHHc
Confidence 134443333322222222221111223444433 49999999988 23455556555543
Q ss_pred Cc-----------cCCceEEEeecCCC------C-----------------CCCccccCCCccceEEecCCCCHHHH---
Q 009974 206 FE-----------QNEGIILMAATNLP------D-----------------ILDPALTRPGRFDRHIVVPNPDVRGR--- 248 (521)
Q Consensus 206 ~~-----------~~~~vivI~ttn~~------~-----------------~ld~al~r~gRf~~~i~~~~P~~~~r--- 248 (521)
.. ...++.+|+++|.- + .+...++. |||.++.++.++.++.
T Consensus 322 ~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~~~ 399 (499)
T TIGR00368 322 GSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLLST 399 (499)
T ss_pred CcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHhcc
Confidence 21 13468999999862 1 47777887 9999999997754432
Q ss_pred ----------HHHHHH------HhccC---CCCCcc-------------c----HHHHHhcCCCCCHHHHHHHHHHHHHH
Q 009974 249 ----------QEILEL------YLQDK---PLADDV-------------D----VKAIARGTPGFNGADLANLVNIAAIK 292 (521)
Q Consensus 249 ----------~~il~~------~l~~~---~~~~~~-------------~----l~~la~~~~g~s~~dl~~lv~~A~~~ 292 (521)
..+.+. .+... ...... . +..... ..++|.+....+++-|...
T Consensus 400 ~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~-~~~lS~R~~~rilrvArTi 478 (499)
T TIGR00368 400 GSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALN-KLGLSSRATHRILKVARTI 478 (499)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHH
Confidence 222211 11111 111111 1 111222 2358999999999999999
Q ss_pred HHHhCCCccCHHHHHHHHH
Q 009974 293 AAVDGGEKLTATELEFAKD 311 (521)
Q Consensus 293 a~~~~~~~it~~~~~~a~~ 311 (521)
|..++.+.|+.+|+.+|+.
T Consensus 479 AdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 479 ADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HhhcCCCCCCHHHHHHHHh
Confidence 9999999999999999874
No 161
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.3e-11 Score=134.79 Aligned_cols=168 Identities=21% Similarity=0.335 Sum_probs=125.8
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEE
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYR 141 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~----------~~~~~~i 141 (521)
....++-++|.++.++++.+++. +. ..++-+|.|+||+|||.++.-+|.+. +..++.+
T Consensus 165 r~gklDPvIGRd~EI~r~iqIL~---RR---------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 165 REGKLDPVIGRDEEIRRTIQILS---RR---------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred hcCCCCCCcChHHHHHHHHHHHh---cc---------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 34579999999986555555443 22 22467899999999999999999864 4557788
Q ss_pred eCchhh--hhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecC
Q 009974 142 AGSEFE--EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 219 (521)
Q Consensus 142 ~~~~~~--~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn 219 (521)
+...+. .+|.|+.+++++.+.+......+.||||||+|.+.+......+ .-..-|-|.-.+ .+..+-+|++|.
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~-a~DAaNiLKPaL----ARGeL~~IGATT 307 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG-AMDAANLLKPAL----ARGELRCIGATT 307 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc-ccchhhhhHHHH----hcCCeEEEEecc
Confidence 877775 4689999999999999999888999999999999765443221 222223332222 256788999988
Q ss_pred CCC-----CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccC
Q 009974 220 LPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK 259 (521)
Q Consensus 220 ~~~-----~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~ 259 (521)
..+ .-|+||.| ||. .|.+..|+.++-..|++-.-..+
T Consensus 308 ~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~y 349 (786)
T COG0542 308 LDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERY 349 (786)
T ss_pred HHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHH
Confidence 653 35899999 995 88999999999999998765543
No 162
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.36 E-value=1.4e-11 Score=120.88 Aligned_cols=212 Identities=21% Similarity=0.338 Sum_probs=134.0
Q ss_pred cCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCchhh---
Q 009974 80 KGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEFE--- 147 (521)
Q Consensus 80 ~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---------~~~~~~i~~~~~~--- 147 (521)
+|+..+++.|..+-+.+..|.. .++| ++||+|++|.|||++++.+++.. .+|++++.+..-.
T Consensus 37 IgY~~A~~~L~~L~~Ll~~P~~-----~Rmp-~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 37 IGYPRAKEALDRLEELLEYPKR-----HRMP-NLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred ecCHHHHHHHHHHHHHHhCCcc-----cCCC-ceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 9999999999998888888755 4455 89999999999999999998744 3578877653211
Q ss_pred hhhh------hh-------hhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccC--Cce
Q 009974 148 EMFV------GV-------GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQN--EGI 212 (521)
Q Consensus 148 ~~~~------g~-------~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~--~~v 212 (521)
..|. |. ..+.-..+....+...+.+|+|||++.+...... .+ ..+++.+..+... -.+
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~----~q---r~~Ln~LK~L~NeL~ipi 183 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYR----KQ---REFLNALKFLGNELQIPI 183 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHH----HH---HHHHHHHHHHhhccCCCe
Confidence 1110 10 1122233344455667779999999997543211 12 2223333222222 344
Q ss_pred EEEeecCCCC--CCCccccCCCccceEEecCCCC-HHHHHHHHHHHhccCCCC--Cccc----HHHHHhcCCCCCHHHHH
Q 009974 213 ILMAATNLPD--ILDPALTRPGRFDRHIVVPNPD-VRGRQEILELYLQDKPLA--DDVD----VKAIARGTPGFNGADLA 283 (521)
Q Consensus 213 ivI~ttn~~~--~ld~al~r~gRf~~~i~~~~P~-~~~r~~il~~~l~~~~~~--~~~~----l~~la~~~~g~s~~dl~ 283 (521)
+.+||..--. .-|+.+.+ ||+ .+.+|... .++-..++..+-...++. ++.. ...+-..+.| +.+++.
T Consensus 184 V~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G-~iG~l~ 259 (302)
T PF05621_consen 184 VGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEG-LIGELS 259 (302)
T ss_pred EEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCC-chHHHH
Confidence 5555433222 34677777 996 45555432 345555666665444332 1222 2455566766 567899
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHH
Q 009974 284 NLVNIAAIKAAVDGGEKLTATELEF 308 (521)
Q Consensus 284 ~lv~~A~~~a~~~~~~~it~~~~~~ 308 (521)
++++.|+..|.+.|.+.||.+.++.
T Consensus 260 ~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 260 RLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred HHHHHHHHHHHhcCCceecHHHHhh
Confidence 9999999999999999999998864
No 163
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=1.2e-11 Score=124.82 Aligned_cols=183 Identities=13% Similarity=0.182 Sum_probs=125.6
Q ss_pred CcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE----------EEEeCc
Q 009974 75 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF----------FYRAGS 144 (521)
Q Consensus 75 ~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~----------~~i~~~ 144 (521)
.|++|+|++.+++.|.+.+. ..+.|.++||+||+|+||+++|.++|+.+-+.- ...+.+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~-----------~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIK-----------QNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHH-----------hCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 58999999999999999886 245677999999999999999999999763221 111111
Q ss_pred hhh---------hh--------hhh--------hhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHH
Q 009974 145 EFE---------EM--------FVG--------VGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKT 195 (521)
Q Consensus 145 ~~~---------~~--------~~g--------~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~ 195 (521)
++. +. ..| -....++++...+.. +...|++||++|.+ ....
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m----------~~~a 140 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM----------NEAA 140 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc----------CHHH
Confidence 111 00 000 012345555444432 34569999999999 4567
Q ss_pred HHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCC
Q 009974 196 LHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTP 275 (521)
Q Consensus 196 l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~ 275 (521)
.|.||..++... +.++|..|+.++.|-+.+++ |. ..+.|++|+.++..++++........ +.+...++....
T Consensus 141 aNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~~~a~ 212 (314)
T PRK07399 141 ANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELLALAQ 212 (314)
T ss_pred HHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHHHHcC
Confidence 889999998643 33566677888999999988 87 68999999999999999876532221 222456666665
Q ss_pred CCCHHHHHHHHH
Q 009974 276 GFNGADLANLVN 287 (521)
Q Consensus 276 g~s~~dl~~lv~ 287 (521)
| +++...++++
T Consensus 213 G-s~~~al~~l~ 223 (314)
T PRK07399 213 G-SPGAAIANIE 223 (314)
T ss_pred C-CHHHHHHHHH
Confidence 5 6666655554
No 164
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.35 E-value=2.3e-11 Score=137.84 Aligned_cols=193 Identities=22% Similarity=0.283 Sum_probs=125.1
Q ss_pred ccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCce-EEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhh---
Q 009974 77 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKG-ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM--- 149 (521)
Q Consensus 77 ~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~-vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~--- 149 (521)
+.|+|++++...+.+.+...+..-.+ ...|.+ +||+||||||||.+|+++|..+ ..+++.++++++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~----~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLED----PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCC----CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 46899999998888877653321110 123444 8999999999999999999988 457899998887543
Q ss_pred ---------hhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc---------cCCc
Q 009974 150 ---------FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEG 211 (521)
Q Consensus 150 ---------~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~---------~~~~ 211 (521)
|+|.... ..+....+...++||+|||||.+ ...+.+.|++.++.-. .-.+
T Consensus 642 ~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka----------~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n 709 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA----------HPDVLELFYQVFDKGVMEDGEGREIDFKN 709 (852)
T ss_pred ccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc----------CHHHHHHHHHHhhcceeecCCCcEEeccc
Confidence 2222211 12334445567799999999876 3456667777766321 1145
Q ss_pred eEEEeecCCCC-----------------------------CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccC---
Q 009974 212 IILMAATNLPD-----------------------------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK--- 259 (521)
Q Consensus 212 vivI~ttn~~~-----------------------------~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~--- 259 (521)
.+||.|||... .+.|+++. |++ .|.|.+.+.++..+|+...+...
T Consensus 710 ~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~~r 786 (852)
T TIGR03345 710 TVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRIARR 786 (852)
T ss_pred cEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 78889988531 13455555 886 88999999999999988876441
Q ss_pred -----CCC---CcccHHHHHhcCCC--CCHHHHHHHHHH
Q 009974 260 -----PLA---DDVDVKAIARGTPG--FNGADLANLVNI 288 (521)
Q Consensus 260 -----~~~---~~~~l~~la~~~~g--~s~~dl~~lv~~ 288 (521)
+.. ++.....|+....+ +-.+.++++++.
T Consensus 787 l~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~ 825 (852)
T TIGR03345 787 LKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQ 825 (852)
T ss_pred HHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHH
Confidence 211 12224455554432 345666666554
No 165
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.34 E-value=3.6e-11 Score=137.11 Aligned_cols=200 Identities=20% Similarity=0.258 Sum_probs=129.2
Q ss_pred cccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhh--
Q 009974 76 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF-- 150 (521)
Q Consensus 76 f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~-- 150 (521)
.+.|+|++++.+.+.+.+...+.... ...++...+||+||||||||++|+++|..+ +.+++.++++++....
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~---~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLS---DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCC---CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH
Confidence 35699999999999988875432100 012234569999999999999999999976 5689999998764421
Q ss_pred ---hhhhhH-----HHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc---------cCCceE
Q 009974 151 ---VGVGAR-----RVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGII 213 (521)
Q Consensus 151 ---~g~~~~-----~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~---------~~~~vi 213 (521)
.|.... ....+....+....+||+||||+.+ ...+.+.|++.++.-. .-.+.+
T Consensus 641 ~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka----------~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~i 710 (852)
T TIGR03346 641 ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA----------HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTV 710 (852)
T ss_pred HHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC----------CHHHHHHHHHHHhcCceecCCCeEEecCCcE
Confidence 111110 1122333344455579999999987 3456677777765321 123477
Q ss_pred EEeecCCCCC-------------------------CCccccCCCccceEEecCCCCHHHHHHHHHHHhccC-------CC
Q 009974 214 LMAATNLPDI-------------------------LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK-------PL 261 (521)
Q Consensus 214 vI~ttn~~~~-------------------------ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~-------~~ 261 (521)
||+|||.... +.|.|.. |+|.++.|.+++.++..+|+...+... ++
T Consensus 711 iI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~ 788 (852)
T TIGR03346 711 IIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKI 788 (852)
T ss_pred EEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 8899997321 2345555 999999999999999999988776421 11
Q ss_pred C---CcccHHHHHhcCC--CCCHHHHHHHHHHHH
Q 009974 262 A---DDVDVKAIARGTP--GFNGADLANLVNIAA 290 (521)
Q Consensus 262 ~---~~~~l~~la~~~~--g~s~~dl~~lv~~A~ 290 (521)
. ++..+..|++... .+..+.|++++++..
T Consensus 789 ~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 789 TLELSDAALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred eecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 1 2222445555422 455666766666544
No 166
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.33 E-value=1.4e-11 Score=125.46 Aligned_cols=198 Identities=24% Similarity=0.253 Sum_probs=120.4
Q ss_pred ccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhh----
Q 009974 79 VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV---- 151 (521)
Q Consensus 79 i~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~---- 151 (521)
++|.+...+++.+.+..+... ..+|||+|++||||+++|+++.... +.||+.++|..+.....
T Consensus 1 liG~S~~m~~~~~~~~~~a~~----------~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL----------DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC----------CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 478888888888777765432 2369999999999999999998754 57999999987643221
Q ss_pred -hhh-------hHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc---------cCCceEE
Q 009974 152 -GVG-------ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGIIL 214 (521)
Q Consensus 152 -g~~-------~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~---------~~~~viv 214 (521)
|.. .......|..|. ..+|||||||.|. ......|+..++.-. ...++.+
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L~----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 137 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATAS----------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRL 137 (329)
T ss_pred hccccccccCcccccCCchhhCC---CCEEEeCChHhCC----------HHHHHHHHHHHHcCcEEecCCCceeccceEE
Confidence 100 000112344443 3599999999993 334445555554211 1245788
Q ss_pred EeecCCCC-------CCCccccCCCccceEEecCCCCHHHHHH----HHHHHhcc----CCC-----CCcccHHHHHhcC
Q 009974 215 MAATNLPD-------ILDPALTRPGRFDRHIVVPNPDVRGRQE----ILELYLQD----KPL-----ADDVDVKAIARGT 274 (521)
Q Consensus 215 I~ttn~~~-------~ld~al~r~gRf~~~i~~~~P~~~~r~~----il~~~l~~----~~~-----~~~~~l~~la~~~ 274 (521)
|++||..- .+.+.|.. ||. .+.+..|...+|.+ ++++|+.. .+. -++..+..|..+.
T Consensus 138 I~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~ 214 (329)
T TIGR02974 138 VCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYH 214 (329)
T ss_pred EEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCC
Confidence 99988542 12233333 342 45677777777754 55555532 111 1233356666666
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCccCHHH
Q 009974 275 PGFNGADLANLVNIAAIKAAVDGGEKLTATE 305 (521)
Q Consensus 275 ~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~ 305 (521)
.--+.++|+++++++...+ ..+.++.++
T Consensus 215 WPGNvrEL~n~i~~~~~~~---~~~~~~~~~ 242 (329)
T TIGR02974 215 WPGNVRELKNVVERSVYRH---GLEEAPIDE 242 (329)
T ss_pred CCchHHHHHHHHHHHHHhC---CCCccchhh
Confidence 5557788888888776543 334555554
No 167
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.33 E-value=3.9e-11 Score=136.34 Aligned_cols=169 Identities=21% Similarity=0.272 Sum_probs=113.3
Q ss_pred CcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhh-
Q 009974 75 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF- 150 (521)
Q Consensus 75 ~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~- 150 (521)
-++.|+|++.+.+.+.+.+...+..... ..++...+||+||||||||++|+++|+.+ +.+++.++++++....
T Consensus 566 l~~~viGQ~~ai~~l~~~i~~~~~gl~~---~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 566 LHHRVIGQNEAVEAVSNAIRRSRAGLSD---PNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred hCCeEeCCHHHHHHHHHHHHHHHhcccC---CCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 3667999999999999988764321110 01122368999999999999999999876 4689999998875431
Q ss_pred ----hhhhhH----HHHHHHHHH-HhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcC--c-------cCCce
Q 009974 151 ----VGVGAR----RVRSLFQAA-KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--E-------QNEGI 212 (521)
Q Consensus 151 ----~g~~~~----~i~~~f~~a-~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~--~-------~~~~v 212 (521)
.|.... .-...+..+ +....+||+|||++.+ .....+.|+..++.- . .-.+.
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka----------~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~ 712 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA----------HPDVFNILLQVLDDGRLTDGQGRTVDFRNT 712 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC----------CHHHHHHHHHHHhhCceecCCceEEeeccc
Confidence 111100 001122233 3334489999999987 344666677666531 1 11345
Q ss_pred EEEeecCCCC-------------------------CCCccccCCCccceEEecCCCCHHHHHHHHHHHhcc
Q 009974 213 ILMAATNLPD-------------------------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD 258 (521)
Q Consensus 213 ivI~ttn~~~-------------------------~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~ 258 (521)
++|+|||... .+.|+|+. |++.++.|.+++.++...|++.++..
T Consensus 713 iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 713 VVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred EEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 7888998731 23456666 89999999999999999999888754
No 168
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.33 E-value=2.2e-12 Score=120.38 Aligned_cols=119 Identities=29% Similarity=0.433 Sum_probs=69.9
Q ss_pred CcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC-------------------
Q 009974 75 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG------------------- 135 (521)
Q Consensus 75 ~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~------------------- 135 (521)
.|+||+|++.+|+.|.-... | ..++|++||||||||++|+.+..-+-
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 48999999999998887665 2 25899999999999999999987431
Q ss_pred ---------CCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcC
Q 009974 136 ---------VPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF 206 (521)
Q Consensus 136 ---------~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~ 206 (521)
.||.....+.-.....|.+....-..+..|.. .|||+||+..+ ...++..|++-++.-
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~---GVLflDE~~ef----------~~~vld~Lr~ple~g 133 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHR---GVLFLDELNEF----------DRSVLDALRQPLEDG 133 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTT---SEEEECETTTS-----------HHHHHHHHHHHHHS
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcC---CEEEechhhhc----------CHHHHHHHHHHHHCC
Confidence 22333222221222222221111112233333 39999999777 567888888777632
Q ss_pred -----------ccCCceEEEeecCC
Q 009974 207 -----------EQNEGIILMAATNL 220 (521)
Q Consensus 207 -----------~~~~~vivI~ttn~ 220 (521)
.-..++++|+|+|.
T Consensus 134 ~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 134 EVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp BEEEEETTEEEEEB--EEEEEEE-S
T ss_pred eEEEEECCceEEEecccEEEEEecc
Confidence 11345889999884
No 169
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.33 E-value=6.5e-11 Score=120.99 Aligned_cols=134 Identities=30% Similarity=0.341 Sum_probs=89.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhhhhhHHHHHH------HHHHHh--cCC--cEEEEccccc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSL------FQAAKK--KAP--CIIFIDEIDA 180 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~------f~~a~~--~~p--~Il~IDEiD~ 180 (521)
+++||.||||||||++|+.+|..++.+|+.++|..........+....... |..... ... +|+++|||+.
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 379999999999999999999999999999999754332111111111110 000000 001 3999999998
Q ss_pred cccCCcCCCcccHHHHHHHHHhhhc----------CccCCceEEEeecC-----CCCCCCccccCCCccceEEecCCCC-
Q 009974 181 VGSTRKQWEGHTKKTLHQLLVEMDG----------FEQNEGIILMAATN-----LPDILDPALTRPGRFDRHIVVPNPD- 244 (521)
Q Consensus 181 l~~~~~~~~~~~~~~l~~ll~~l~~----------~~~~~~vivI~ttn-----~~~~ld~al~r~gRf~~~i~~~~P~- 244 (521)
. ...+.+.|+..|+. +.-..+++||+|+| ....+++++++ ||...+.++.|+
T Consensus 124 a----------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~ 191 (329)
T COG0714 124 A----------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDS 191 (329)
T ss_pred C----------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCc
Confidence 7 23455666666553 33446789999999 44568999999 998899999994
Q ss_pred HHHHHHHHHHHh
Q 009974 245 VRGRQEILELYL 256 (521)
Q Consensus 245 ~~~r~~il~~~l 256 (521)
..+...+.....
T Consensus 192 ~~e~~~i~~~~~ 203 (329)
T COG0714 192 EEEERIILARVG 203 (329)
T ss_pred hHHHHHHHHhCc
Confidence 444444444433
No 170
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.32 E-value=1e-11 Score=134.04 Aligned_cols=193 Identities=24% Similarity=0.287 Sum_probs=123.8
Q ss_pred CcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhh
Q 009974 75 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV 151 (521)
Q Consensus 75 ~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~ 151 (521)
++.+++|.+...+.+.+.+..+... +.+|||+|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~----------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAAS----------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCC----------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 5788999999999988888765432 3379999999999999999998864 57999999988754211
Q ss_pred -----hhhh-------HHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc---------cCC
Q 009974 152 -----GVGA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNE 210 (521)
Q Consensus 152 -----g~~~-------~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~---------~~~ 210 (521)
|... ......|..+. ..+|||||||.|. ......|+..++.-. ...
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 321 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELP----------LALQAKLLRVLQYGEIQRVGSDRSLRV 321 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCC----------HHHHHHHHHHHhcCCEeeCCCCcceec
Confidence 1100 00112344443 3489999999993 334445555554211 123
Q ss_pred ceEEEeecCCCCCCCccccCCCccce-------EEecCCCCHHHHHH----HHHHHhccC----C---C-CCcccHHHHH
Q 009974 211 GIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----P---L-ADDVDVKAIA 271 (521)
Q Consensus 211 ~vivI~ttn~~~~ld~al~r~gRf~~-------~i~~~~P~~~~r~~----il~~~l~~~----~---~-~~~~~l~~la 271 (521)
++.+|++||..-. .+...|+|.. .+.+..|...+|.+ ++++|+.+. + . -++..+..|.
T Consensus 322 ~~RiI~~t~~~l~---~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~ 398 (509)
T PRK05022 322 DVRVIAATNRDLR---EEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALL 398 (509)
T ss_pred ceEEEEecCCCHH---HHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 5789999986521 1111223321 45677787777754 455555331 1 1 1233356666
Q ss_pred hcCCCCCHHHHHHHHHHHHHHH
Q 009974 272 RGTPGFNGADLANLVNIAAIKA 293 (521)
Q Consensus 272 ~~~~g~s~~dl~~lv~~A~~~a 293 (521)
.+..-.+.++|++++++|+..+
T Consensus 399 ~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 399 AYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred hCCCCCcHHHHHHHHHHHHHhc
Confidence 7666568899999999888765
No 171
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.32 E-value=3.9e-11 Score=112.61 Aligned_cols=145 Identities=18% Similarity=0.273 Sum_probs=99.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------------------EEEEeCchhhhhhhhhhhHHHHHHH
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------------------FFYRAGSEFEEMFVGVGARRVRSLF 162 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~~~~------------------------~~~i~~~~~~~~~~g~~~~~i~~~f 162 (521)
.+.|..+||+||+|+|||++|+.+++.+... +..+.... . ..+...++.+.
T Consensus 11 ~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~ 85 (188)
T TIGR00678 11 GRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELV 85 (188)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHH
Confidence 4567789999999999999999999987442 22221110 0 01234555555
Q ss_pred HHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEE
Q 009974 163 QAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHI 238 (521)
Q Consensus 163 ~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i 238 (521)
+.+.. +...|++|||+|.+. ....+.|+..++.. +...++|.+||.+..+.+++++ |+ ..+
T Consensus 86 ~~~~~~~~~~~~kviiide~~~l~----------~~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~-~~~ 150 (188)
T TIGR00678 86 EFLSRTPQESGRRVVIIEDAERMN----------EAAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RC-QVL 150 (188)
T ss_pred HHHccCcccCCeEEEEEechhhhC----------HHHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hc-EEe
Confidence 55543 335699999999983 34567788888763 3345566667777899999987 77 589
Q ss_pred ecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCC
Q 009974 239 VVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPG 276 (521)
Q Consensus 239 ~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g 276 (521)
.+++|+.++..++++.. ++ ++..+..++..+.|
T Consensus 151 ~~~~~~~~~~~~~l~~~----gi-~~~~~~~i~~~~~g 183 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ----GI-SEEAAELLLALAGG 183 (188)
T ss_pred eCCCCCHHHHHHHHHHc----CC-CHHHHHHHHHHcCC
Confidence 99999999999988776 22 23345556555543
No 172
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.32 E-value=3.3e-10 Score=112.33 Aligned_cols=188 Identities=18% Similarity=0.221 Sum_probs=116.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCC-CEEE---EeC----chhhhh---hhhhh------h---HHHHHHH-HHHHhcCC
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGV-PFFY---RAG----SEFEEM---FVGVG------A---RRVRSLF-QAAKKKAP 170 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~-~~~~---i~~----~~~~~~---~~g~~------~---~~i~~~f-~~a~~~~p 170 (521)
.++|+||+|+|||++++.+++.+.. .+.. +++ .++... ..|.. . ..+...+ .....+.+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 5889999999999999999998752 2221 111 111111 01111 0 1122222 22335667
Q ss_pred cEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc--cCCceEEEeec--CCCCCCC----ccccCCCccceEEecCC
Q 009974 171 CIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--QNEGIILMAAT--NLPDILD----PALTRPGRFDRHIVVPN 242 (521)
Q Consensus 171 ~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~--~~~~vivI~tt--n~~~~ld----~al~r~gRf~~~i~~~~ 242 (521)
.+|+|||+|.+.. ..+..+. .+-... ....+.|+.+. +..+.+. ..+.+ |+...+++++
T Consensus 125 ~vliiDe~~~l~~----------~~~~~l~-~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l~~ 191 (269)
T TIGR03015 125 ALLVVDEAQNLTP----------ELLEELR-MLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHLGP 191 (269)
T ss_pred eEEEEECcccCCH----------HHHHHHH-HHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeCCC
Confidence 8999999998832 1222222 222111 12222223222 2111221 12444 7777899999
Q ss_pred CCHHHHHHHHHHHhccCCC-----CCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 009974 243 PDVRGRQEILELYLQDKPL-----ADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 313 (521)
Q Consensus 243 P~~~~r~~il~~~l~~~~~-----~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~ 313 (521)
.+.++..+++...+...+. -.+..++.+.+.+.|. ++.|..+++.+...|..++.+.|+.++++.++..+
T Consensus 192 l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 192 LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 9999999999988864321 2344578888888885 67799999999999999999999999999998763
No 173
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.32 E-value=5.7e-12 Score=137.08 Aligned_cols=205 Identities=21% Similarity=0.259 Sum_probs=128.2
Q ss_pred CCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhh
Q 009974 74 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF 150 (521)
Q Consensus 74 ~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~ 150 (521)
.+|++++|.+...+++.+.+..+... ..+|||+|++|||||++|++|.... +.||+.++|..+....
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~----------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~ 262 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARS----------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETL 262 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCc----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHH
Confidence 57999999999988888888765432 2369999999999999999999864 5799999998774432
Q ss_pred hhh-----hh-------HHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc---------cC
Q 009974 151 VGV-----GA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QN 209 (521)
Q Consensus 151 ~g~-----~~-------~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~---------~~ 209 (521)
... .. ......|..+. ..+|||||||.|. ......|+..++.-. ..
T Consensus 263 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~GtL~ldei~~L~----------~~~Q~~Ll~~l~~~~~~~~~~~~~~~ 329 (534)
T TIGR01817 263 LESELFGHEKGAFTGAIAQRKGRFELAD---GGTLFLDEIGEIS----------PAFQAKLLRVLQEGEFERVGGNRTLK 329 (534)
T ss_pred HHHHHcCCCCCccCCCCcCCCCcccccC---CCeEEEechhhCC----------HHHHHHHHHHHhcCcEEECCCCceEe
Confidence 110 00 00011133332 3599999999993 334455555554211 01
Q ss_pred CceEEEeecCCCCCCCccccCCCccce-------EEecCCCCHHHH----HHHHHHHhccC----CC---CCcccHHHHH
Q 009974 210 EGIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGR----QEILELYLQDK----PL---ADDVDVKAIA 271 (521)
Q Consensus 210 ~~vivI~ttn~~~~ld~al~r~gRf~~-------~i~~~~P~~~~r----~~il~~~l~~~----~~---~~~~~l~~la 271 (521)
.++.+|++|+..- .. +...|+|.. .+.+..|...+| ..++++++... +. -++..+..+.
T Consensus 330 ~~~riI~~s~~~l--~~-~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~ 406 (534)
T TIGR01817 330 VDVRLVAATNRDL--EE-AVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLM 406 (534)
T ss_pred ecEEEEEeCCCCH--HH-HHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 2478888887542 11 112234422 344555555554 34666666432 11 1233356667
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 009974 272 RGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 307 (521)
Q Consensus 272 ~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~ 307 (521)
.+..--+.++|++++++|+..+ ....|+.+|+.
T Consensus 407 ~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 407 SCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred hCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 7665558888999998877543 45688888864
No 174
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.31 E-value=3e-11 Score=130.21 Aligned_cols=188 Identities=18% Similarity=0.209 Sum_probs=119.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE----eCchhhhhhhhh---hhHHH-HHHHHHHHhcCCcEEEEccccccc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYR----AGSEFEEMFVGV---GARRV-RSLFQAAKKKAPCIIFIDEIDAVG 182 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i----~~~~~~~~~~g~---~~~~i-~~~f~~a~~~~p~Il~IDEiD~l~ 182 (521)
.++||+|+||||||++|+++++......+.. ++..+....... +...+ ...+..| ...+++|||+|.+.
T Consensus 237 ~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~ 313 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLA---DNGVCCIDEFDKMD 313 (509)
T ss_pred ceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEec---CCCEEEEechhhCC
Confidence 3799999999999999999999775432221 222221100000 00000 0111122 23599999999983
Q ss_pred cCCcCCCcccHHHHHHHHHhhhcCc-----------cCCceEEEeecCCCC-------------CCCccccCCCccceEE
Q 009974 183 STRKQWEGHTKKTLHQLLVEMDGFE-----------QNEGIILMAATNLPD-------------ILDPALTRPGRFDRHI 238 (521)
Q Consensus 183 ~~~~~~~~~~~~~l~~ll~~l~~~~-----------~~~~vivI~ttn~~~-------------~ld~al~r~gRf~~~i 238 (521)
......|+..|+.-. -+.++.||+|+|... .|++++++ |||..+
T Consensus 314 ----------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~ 381 (509)
T smart00350 314 ----------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLF 381 (509)
T ss_pred ----------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEE
Confidence 334445555554311 135688999999652 58999998 999865
Q ss_pred ec-CCCCHHHHHHHHHHHhccCC-----------------------------CC---CcccHHHHH------hc------
Q 009974 239 VV-PNPDVRGRQEILELYLQDKP-----------------------------LA---DDVDVKAIA------RG------ 273 (521)
Q Consensus 239 ~~-~~P~~~~r~~il~~~l~~~~-----------------------------~~---~~~~l~~la------~~------ 273 (521)
.+ +.|+.+...+|.++.+.... .. ++...+.+. +.
T Consensus 382 ~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~ 461 (509)
T smart00350 382 VVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSE 461 (509)
T ss_pred EecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccc
Confidence 44 78999998888887543210 00 011111111 11
Q ss_pred ---CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 009974 274 ---TPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 313 (521)
Q Consensus 274 ---~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~ 313 (521)
..+.|++.+..+++-|...|..+.++.|+.+|+..|+.-+
T Consensus 462 ~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~ 504 (509)
T smart00350 462 ARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLL 504 (509)
T ss_pred cccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 2356899999999999999999999999999999998643
No 175
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.31 E-value=1.7e-11 Score=124.86 Aligned_cols=202 Identities=23% Similarity=0.246 Sum_probs=123.5
Q ss_pred CcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhh-
Q 009974 75 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF- 150 (521)
Q Consensus 75 ~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~- 150 (521)
.|++++|.+...+.+.+.+..+... +.+|||+|++||||+++|+++.... +.||+.++|..+....
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~----------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPL----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 4788999999988888888765432 2369999999999999999998754 4799999998864321
Q ss_pred ----hhhhh-------HHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc---------cCC
Q 009974 151 ----VGVGA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNE 210 (521)
Q Consensus 151 ----~g~~~-------~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~---------~~~ 210 (521)
.|... ......|..+. ..+|||||+|.|. ......|+..++.-. .+.
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~----------~~~Q~~L~~~l~~~~~~~~g~~~~~~~ 140 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAP----------MLVQEKLLRVIEYGELERVGGSQPLQV 140 (326)
T ss_pred HHHHccccccccCCcccccCCchhccC---CCeEEeCChhhCC----------HHHHHHHHHHHhcCcEEeCCCCceeec
Confidence 11100 00122344433 3489999999993 334445555554211 113
Q ss_pred ceEEEeecCCCC-------CCCccccCCCccceEEecCCCCHHHHHH----HHHHHhcc----CCC-----CCcccHHHH
Q 009974 211 GIILMAATNLPD-------ILDPALTRPGRFDRHIVVPNPDVRGRQE----ILELYLQD----KPL-----ADDVDVKAI 270 (521)
Q Consensus 211 ~vivI~ttn~~~-------~ld~al~r~gRf~~~i~~~~P~~~~r~~----il~~~l~~----~~~-----~~~~~l~~l 270 (521)
++.+|++|+..- .+.+.|.. ||. .+.+..|...+|.+ ++++|+.. .+. -++..+..+
T Consensus 141 ~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L 217 (326)
T PRK11608 141 NVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETL 217 (326)
T ss_pred cEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence 578888887641 23344443 452 34556666666654 55565532 111 122335566
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHH
Q 009974 271 ARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATE 305 (521)
Q Consensus 271 a~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~ 305 (521)
..+..--+.++|+++++++...+ ....++.++
T Consensus 218 ~~y~WPGNvrEL~~vl~~a~~~~---~~~~~~~~~ 249 (326)
T PRK11608 218 LNYRWPGNIRELKNVVERSVYRH---GTSEYPLDN 249 (326)
T ss_pred HhCCCCcHHHHHHHHHHHHHHhc---CCCCCchhh
Confidence 66655557888888888776543 333454444
No 176
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.30 E-value=3.1e-11 Score=130.45 Aligned_cols=206 Identities=20% Similarity=0.260 Sum_probs=125.7
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhh
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE 148 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~ 148 (521)
...+|++++|.+...+++.+.+..+... ...|||+|++||||+++|+++.... +.||+.++|+.+..
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~----------~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAML----------DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCC----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 4468999999999877777777654332 2369999999999999999997654 47999999988754
Q ss_pred hhh-----hhhh-------HHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcC--c-------
Q 009974 149 MFV-----GVGA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--E------- 207 (521)
Q Consensus 149 ~~~-----g~~~-------~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~--~------- 207 (521)
... |... +....+|+.|.. ..|||||||.+.. .....|+..++.- .
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~---GtL~LdeI~~L~~----------~~Q~~Ll~~l~~~~~~~~g~~~~ 335 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQANG---GSVLLDEIGEMSP----------RMQAKLLRFLNDGTFRRVGEDHE 335 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcCC---CEEEEeChhhCCH----------HHHHHHHHHHhcCCcccCCCCcc
Confidence 211 1100 111234554443 4899999999932 3334455444321 1
Q ss_pred cCCceEEEeecCCCC-------CCCccccCCCccceEEecCCCCHHHHHH----HHHHHhc----cCCC----CCcccHH
Q 009974 208 QNEGIILMAATNLPD-------ILDPALTRPGRFDRHIVVPNPDVRGRQE----ILELYLQ----DKPL----ADDVDVK 268 (521)
Q Consensus 208 ~~~~vivI~ttn~~~-------~ld~al~r~gRf~~~i~~~~P~~~~r~~----il~~~l~----~~~~----~~~~~l~ 268 (521)
...++.||++|+.+- .+.+.|.. |+. .+.+..|...+|.+ ++++|+. +.+. -++..+.
T Consensus 336 ~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~ 412 (520)
T PRK10820 336 VHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNT 412 (520)
T ss_pred eeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 123578888887652 12233333 432 46667777777663 4444443 2221 1222355
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 009974 269 AIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATEL 306 (521)
Q Consensus 269 ~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~ 306 (521)
.|..+..-.+.++|++++.+|...+ .+..|+.+|+
T Consensus 413 ~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 413 VLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 5666544447788888887776543 4567877775
No 177
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.30 E-value=9.3e-11 Score=128.31 Aligned_cols=102 Identities=24% Similarity=0.271 Sum_probs=67.1
Q ss_pred CceEEEeecCCC--CCCCccccCCCccc---eEEecCC--C-CHHHHHHHHHHHh---ccCCCC---CcccHHHHHh---
Q 009974 210 EGIILMAATNLP--DILDPALTRPGRFD---RHIVVPN--P-DVRGRQEILELYL---QDKPLA---DDVDVKAIAR--- 272 (521)
Q Consensus 210 ~~vivI~ttn~~--~~ld~al~r~gRf~---~~i~~~~--P-~~~~r~~il~~~l---~~~~~~---~~~~l~~la~--- 272 (521)
.++.+|+++|.. ..+++.+++ ||+ ..+.|+. | +.+.+.++++.+. +..+.. ++..+..+.+
T Consensus 267 ~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~ 344 (608)
T TIGR00764 267 CDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQ 344 (608)
T ss_pred cceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHH
Confidence 367899999875 578999998 998 6666543 4 4555555544433 222111 2222333321
Q ss_pred -cC-----CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 009974 273 -GT-----PGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 313 (521)
Q Consensus 273 -~~-----~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~ 313 (521)
.. -..+.++|.++++.|...|..++...|+.+|+.+|+...
T Consensus 345 R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 345 RRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 11 124579999999999888878888899999999997754
No 178
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.29 E-value=1.4e-11 Score=136.84 Aligned_cols=209 Identities=20% Similarity=0.270 Sum_probs=130.2
Q ss_pred cCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhh
Q 009974 73 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM 149 (521)
Q Consensus 73 ~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~ 149 (521)
..+|++++|.+...+++.+.+..+... +.+|||+|++||||+++|+++.+.. +.||+.++|..+...
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~~----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKS----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhCc----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 347999999999888887777654322 2369999999999999999998865 479999999876432
Q ss_pred -----hhhhh----hHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc-----c----CCc
Q 009974 150 -----FVGVG----ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-----Q----NEG 211 (521)
Q Consensus 150 -----~~g~~----~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~-----~----~~~ 211 (521)
+.|.. .......|+.|. ..+||||||+.|. ......|+..++.-. . ..+
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a~---~GtL~ldei~~l~----------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 457 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELAH---GGTLFLEKVEYLS----------PELQSALLQVLKTGVITRLDSRRLIPVD 457 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeECC---CCEEEEcChhhCC----------HHHHHHHHHHHhcCcEEeCCCCceEEee
Confidence 11210 000011233332 3599999999993 334445555554211 1 125
Q ss_pred eEEEeecCCCCCCCccccCCCccce-------EEecCCCCHHHHHH----HHHHHhccC----C--C-CCcccHHHHHhc
Q 009974 212 IILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----P--L-ADDVDVKAIARG 273 (521)
Q Consensus 212 vivI~ttn~~~~ld~al~r~gRf~~-------~i~~~~P~~~~r~~----il~~~l~~~----~--~-~~~~~l~~la~~ 273 (521)
+.+|+||+..- . .+...|+|.. .+.+..|...+|.+ ++++++... . . -++..+..|..+
T Consensus 458 ~riI~~t~~~l--~-~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y 534 (638)
T PRK11388 458 VRVIATTTADL--A-MLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSY 534 (638)
T ss_pred EEEEEeccCCH--H-HHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcC
Confidence 78899988642 1 1122234421 56677777777753 555555432 1 1 123346666776
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009974 274 TPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 274 ~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
...-+.++|+++++.+...+ ....|+.+++...+
T Consensus 535 ~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~~ 568 (638)
T PRK11388 535 RWPGNDFELRSVIENLALSS---DNGRIRLSDLPEHL 568 (638)
T ss_pred CCCChHHHHHHHHHHHHHhC---CCCeecHHHCchhh
Confidence 65567888999988876543 45678888875443
No 179
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.29 E-value=9e-12 Score=127.37 Aligned_cols=197 Identities=25% Similarity=0.312 Sum_probs=123.0
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHh----cCCCEEEEeCchhh
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE----AGVPFFYRAGSEFE 147 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~----~~~~~~~i~~~~~~ 147 (521)
....+++++|.+...+++.+.+..+... ..+||++|++||||+++|+++... .+.||+.+||..+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~ap~----------~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYAPS----------GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhCCC----------CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 3457999999999888888777652221 247999999999999999999753 46799999998875
Q ss_pred hhhhhh------------hhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhc-----C----
Q 009974 148 EMFVGV------------GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG-----F---- 206 (521)
Q Consensus 148 ~~~~g~------------~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~-----~---- 206 (521)
+..... ....-..+|+.|..+ +||+|||..+.. .....|+..++. +
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GG---tLfLDEI~~LP~----------~~Q~kLl~~le~g~~~rvG~~~ 209 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANGG---TLFLDEIHRLPP----------EGQEKLLRVLEEGEYRRVGGSQ 209 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCCC---EEehhhhhhCCH----------hHHHHHHHHHHcCceEecCCCC
Confidence 432210 122234566666655 999999999933 233445555543 1
Q ss_pred ccCCceEEEeecCCCCCCCccccC-CCccc--eEEecCCCCHHHHHH----HHHHHhc----cCCCC--Ccc--cHHHHH
Q 009974 207 EQNEGIILMAATNLPDILDPALTR-PGRFD--RHIVVPNPDVRGRQE----ILELYLQ----DKPLA--DDV--DVKAIA 271 (521)
Q Consensus 207 ~~~~~vivI~ttn~~~~ld~al~r-~gRf~--~~i~~~~P~~~~r~~----il~~~l~----~~~~~--~~~--~l~~la 271 (521)
.....|.+|+|||. .++.+++. ..-+. ..+.+..|+.++|.. ++++|+. +.+.. .+. .+..+-
T Consensus 210 ~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~ 287 (403)
T COG1221 210 PRPVDVRLICATTE--DLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALL 287 (403)
T ss_pred CcCCCceeeecccc--CHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 12356889999884 33333322 00111 134555667666643 5555553 33222 111 244455
Q ss_pred hcCCCCCHHHHHHHHHHHHHHH
Q 009974 272 RGTPGFNGADLANLVNIAAIKA 293 (521)
Q Consensus 272 ~~~~g~s~~dl~~lv~~A~~~a 293 (521)
.+..--+.++++++++++...+
T Consensus 288 ~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 288 AYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred hCCCCCcHHHHHHHHHHHHHHh
Confidence 5544447899999999887665
No 180
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.28 E-value=7.6e-11 Score=120.00 Aligned_cols=175 Identities=25% Similarity=0.317 Sum_probs=114.4
Q ss_pred cccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC----------------------
Q 009974 78 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG---------------------- 135 (521)
Q Consensus 78 di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~---------------------- 135 (521)
+++|.+++...+...+.. ..+.|..+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~----------~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 2 ELVPWQEAVKRLLVQALE----------SGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred CcccchhHHHHHHHHHHh----------cCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 567777777666665542 124565799999999999999999999886
Q ss_pred --CCEEEEeCchhhhhhhhhhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccC
Q 009974 136 --VPFFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQN 209 (521)
Q Consensus 136 --~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~ 209 (521)
-.++.++.++....- .....++.+-..... +...|++|||+|.+ .....|.++..++. +.
T Consensus 72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m----------t~~A~nallk~lEe--p~ 137 (325)
T COG0470 72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL----------TEDAANALLKTLEE--PP 137 (325)
T ss_pred CCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH----------hHHHHHHHHHHhcc--CC
Confidence 356677766654321 122334444433322 33569999999999 34677888888884 45
Q ss_pred CceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHH
Q 009974 210 EGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIA 289 (521)
Q Consensus 210 ~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 289 (521)
.+..+|.+||.++.+-+.+++ |. ..+.|++|+........+ +..+..++. .+.+|++..++..
T Consensus 138 ~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e----------~~~l~~i~~----~~~gd~r~~i~~l 200 (325)
T COG0470 138 KNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE----------DQGLEEIAA----VAEGDARKAINPL 200 (325)
T ss_pred CCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh----------ccchhHHHH----HHHHHHHcCCCHH
Confidence 567888889999998888887 76 577887755544443333 222334443 2445666655544
Q ss_pred HHHH
Q 009974 290 AIKA 293 (521)
Q Consensus 290 ~~~a 293 (521)
...+
T Consensus 201 q~~~ 204 (325)
T COG0470 201 QALA 204 (325)
T ss_pred HHHH
Confidence 4444
No 181
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.28 E-value=8.9e-11 Score=133.48 Aligned_cols=167 Identities=24% Similarity=0.314 Sum_probs=113.9
Q ss_pred ccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhh----
Q 009974 77 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM---- 149 (521)
Q Consensus 77 ~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~---- 149 (521)
+.|+|++++++.+.+.+...+..-. ...++...+||+||||||||++|+++|+.+ +.+++.++++++.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~---~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK---NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc---CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence 5689999999999887765322110 012222358999999999999999999987 468999988877432
Q ss_pred -hhhhhh-----HHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc---------cCCceEE
Q 009974 150 -FVGVGA-----RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGIIL 214 (521)
Q Consensus 150 -~~g~~~-----~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~---------~~~~viv 214 (521)
..|... .....+....+....+||+|||+|.+ ...+.+.|++.++.-. .-.+.++
T Consensus 586 ~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka----------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~ 655 (821)
T CHL00095 586 KLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA----------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLI 655 (821)
T ss_pred HhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC----------CHHHHHHHHHHhccCceecCCCcEEecCceEE
Confidence 122111 11123444555555589999999988 3556777777777421 1246889
Q ss_pred EeecCCCCC-------------------------------------CCccccCCCccceEEecCCCCHHHHHHHHHHHhc
Q 009974 215 MAATNLPDI-------------------------------------LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ 257 (521)
Q Consensus 215 I~ttn~~~~-------------------------------------ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~ 257 (521)
|.|||.... +.|.++. |+|.++.|.+.+.++..+|++..+.
T Consensus 656 I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~ 733 (821)
T CHL00095 656 IMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLK 733 (821)
T ss_pred EEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 999886421 1233444 8889999999999999999888775
Q ss_pred c
Q 009974 258 D 258 (521)
Q Consensus 258 ~ 258 (521)
+
T Consensus 734 ~ 734 (821)
T CHL00095 734 N 734 (821)
T ss_pred H
Confidence 4
No 182
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.27 E-value=7e-11 Score=132.24 Aligned_cols=194 Identities=20% Similarity=0.256 Sum_probs=123.4
Q ss_pred CCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhh-
Q 009974 74 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM- 149 (521)
Q Consensus 74 ~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~- 149 (521)
.+|++++|.++..+.+.+.+..+... +.+|||+|++|||||++|+++.... +.||+.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQS----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence 47999999999998888877765432 2379999999999999999998754 579999999876432
Q ss_pred ----hhhhh-------hHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc---------cC
Q 009974 150 ----FVGVG-------ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QN 209 (521)
Q Consensus 150 ----~~g~~-------~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~---------~~ 209 (521)
..|.. .......|..+. ..+||||||+.+. ......|+..++.-. ..
T Consensus 443 ~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L~----------~~~Q~~L~~~l~~~~~~~~g~~~~~~ 509 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDMP----------LELQPKLLRVLQEQEFERLGSNKIIQ 509 (686)
T ss_pred hhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhCC----------HHHHHHHHHHHHhCCEEeCCCCCccc
Confidence 11110 011123344443 3599999999993 334445555554211 12
Q ss_pred CceEEEeecCCCCCCCccccCCCccce-------EEecCCCCHHHHHH----HHHHHhccC----CC----CCcccHHHH
Q 009974 210 EGIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----PL----ADDVDVKAI 270 (521)
Q Consensus 210 ~~vivI~ttn~~~~ld~al~r~gRf~~-------~i~~~~P~~~~r~~----il~~~l~~~----~~----~~~~~l~~l 270 (521)
.++.+|++|+.+-. .+...|+|.. .+.+..|...+|.+ ++++|+.+. +. -+...+..+
T Consensus 510 ~~~RiI~~t~~~l~---~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L 586 (686)
T PRK15429 510 TDVRLIAATNRDLK---KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTL 586 (686)
T ss_pred ceEEEEEeCCCCHH---HHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 45789999886521 1111123322 56677888887765 555555331 11 123345666
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHH
Q 009974 271 ARGTPGFNGADLANLVNIAAIKA 293 (521)
Q Consensus 271 a~~~~g~s~~dl~~lv~~A~~~a 293 (521)
.....-.+.++|++++++|...+
T Consensus 587 ~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 587 SNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HhCCCCCcHHHHHHHHHHHHHhC
Confidence 66665568899999998887643
No 183
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.8e-11 Score=132.26 Aligned_cols=166 Identities=24% Similarity=0.296 Sum_probs=113.5
Q ss_pred ccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEEeCchhhhhh---
Q 009974 77 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAGSEFEEMF--- 150 (521)
Q Consensus 77 ~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~---~~~~~i~~~~~~~~~--- 150 (521)
+.|+|++++...+.+.+..-+..-. -..+|..++||.||+|+|||-+|+++|..+. .+++.+++|++.+.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~---dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLG---DPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCC---CCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHH
Confidence 4589999999999888875322111 0122335788999999999999999999986 789999999997642
Q ss_pred --hhhhhHHH----H-HHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc--c-------CCceEE
Q 009974 151 --VGVGARRV----R-SLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--Q-------NEGIIL 214 (521)
Q Consensus 151 --~g~~~~~i----~-~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~--~-------~~~viv 214 (521)
.|.....+ . .+-+..+.+..|||++|||+.- +..++|-||+.||.-. + -.+.++
T Consensus 568 rLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA----------HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiI 637 (786)
T COG0542 568 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA----------HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTII 637 (786)
T ss_pred HHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc----------CHHHHHHHHHHhcCCeeecCCCCEEecceeEE
Confidence 22222111 1 2333445555689999999876 5678999999987421 1 134789
Q ss_pred EeecCCCCC----------------------------CCccccCCCccceEEecCCCCHHHHHHHHHHHhc
Q 009974 215 MAATNLPDI----------------------------LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ 257 (521)
Q Consensus 215 I~ttn~~~~----------------------------ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~ 257 (521)
|.|||--.. ..|.++. |+|.+|.|.+.+.+...+|+...+.
T Consensus 638 ImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 638 IMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred EEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHH
Confidence 999985321 2334444 7777777777777777777766654
No 184
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.25 E-value=5e-11 Score=129.63 Aligned_cols=258 Identities=11% Similarity=0.099 Sum_probs=144.9
Q ss_pred cccCCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE-EeCc
Q 009974 66 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY-RAGS 144 (521)
Q Consensus 66 ~~~~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~-i~~~ 144 (521)
++.....+.+++||+|+++..++++.++..... +..+.+.++|+||||||||++++.+|++++..++. .+..
T Consensus 73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv 145 (637)
T TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPT 145 (637)
T ss_pred chHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhh
Confidence 344566778999999999998888887764322 12233459999999999999999999988765433 1111
Q ss_pred ---hhh----------hhh--hhhhhHHHHHHHHHHHh----------cCCcEEEEccccccccCCcCCCcccHHHHHHH
Q 009974 145 ---EFE----------EMF--VGVGARRVRSLFQAAKK----------KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQL 199 (521)
Q Consensus 145 ---~~~----------~~~--~g~~~~~i~~~f~~a~~----------~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~l 199 (521)
... ..+ .....+.++.++..+.. ....||||||++.+... ....+..+
T Consensus 146 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-------~~~~lq~l 218 (637)
T TIGR00602 146 LPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-------DTRALHEI 218 (637)
T ss_pred hhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-------hHHHHHHH
Confidence 000 000 01123344555555542 24569999999987532 22345555
Q ss_pred HH-hhhcCccCCceEEEeecC-CCC--------------CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCC--
Q 009974 200 LV-EMDGFEQNEGIILMAATN-LPD--------------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPL-- 261 (521)
Q Consensus 200 l~-~l~~~~~~~~vivI~ttn-~~~--------------~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~-- 261 (521)
+. ... ....+.+|++++ .+. .|.++++...|. .+|.|++.......+.|+..+.....
T Consensus 219 Lr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~ 294 (637)
T TIGR00602 219 LRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKN 294 (637)
T ss_pred HHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcc
Confidence 54 221 123333443333 221 133566532234 37899999999988888887765321
Q ss_pred ------CCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh-------CCCccCHHHHHHHHHHHhcCccc---cccccc
Q 009974 262 ------ADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD-------GGEKLTATELEFAKDRILMGTER---KTMFIS 325 (521)
Q Consensus 262 ------~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~-------~~~~it~~~~~~a~~~~~~~~~~---~~~~~~ 325 (521)
..+..+..++. .+.+|++.+++.....+... +...++..++..+..+...-... .-..+.
T Consensus 295 ~~~~~~p~~~~l~~I~~----~s~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~~~t~~e~~~l~~~~ 370 (637)
T TIGR00602 295 GEKIKVPKKTSVELLCQ----GCSGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGKHSSNNENQEIQALG 370 (637)
T ss_pred ccccccCCHHHHHHHHH----hCCChHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCCCCCchhHHHHHhhc
Confidence 11234556666 45678998887555443221 22355555655443322110000 000112
Q ss_pred hHHHHHHHHHHhhhHHHhhh
Q 009974 326 EESKKLTAYHESGHAIVAFN 345 (521)
Q Consensus 326 ~~~~~~~a~heaghavv~~~ 345 (521)
..+.....+|-.|..|....
T Consensus 371 ~rd~sl~lfhalgkily~Kr 390 (637)
T TIGR00602 371 GKDVSLFLFRALGKILYCKR 390 (637)
T ss_pred cccchhHHHHHhChhhcccc
Confidence 22334568888888776654
No 185
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=8.5e-11 Score=120.70 Aligned_cols=156 Identities=24% Similarity=0.333 Sum_probs=113.3
Q ss_pred HHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe-CchhhhhhhhhhhHHHHHHHHHHHhcC
Q 009974 91 EVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA-GSEFEEMFVGVGARRVRSLFQAAKKKA 169 (521)
Q Consensus 91 ~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~-~~~~~~~~~g~~~~~i~~~f~~a~~~~ 169 (521)
.++...++++++ +-.++||.||||+|||.||..+|...+.||+.+- ..++.+.-.......++..|+.|.+..
T Consensus 525 llv~qvk~s~~s------~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~ 598 (744)
T KOG0741|consen 525 LLVQQVKNSERS------PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSP 598 (744)
T ss_pred HHHHHhhccccC------cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCc
Confidence 344555555442 2357999999999999999999999999999764 445554433444567899999999998
Q ss_pred CcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCC-ceEEEeecCCCCCCC-ccccCCCccceEEecCCCCH-H
Q 009974 170 PCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNE-GIILMAATNLPDILD-PALTRPGRFDRHIVVPNPDV-R 246 (521)
Q Consensus 170 p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~-~vivI~ttn~~~~ld-~al~r~gRf~~~i~~~~P~~-~ 246 (521)
-+||++|+|+.|..--.-++..++.+++.|+..+....+.. +.+|++||.+.+.|. -.++. .|+..+.+|..+. +
T Consensus 599 lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 599 LSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGE 676 (744)
T ss_pred ceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchH
Confidence 89999999999866555555667778888888887765543 577777777655442 23444 7999999987654 5
Q ss_pred HHHHHHHH
Q 009974 247 GRQEILEL 254 (521)
Q Consensus 247 ~r~~il~~ 254 (521)
+..+++..
T Consensus 677 ~~~~vl~~ 684 (744)
T KOG0741|consen 677 QLLEVLEE 684 (744)
T ss_pred HHHHHHHH
Confidence 66666543
No 186
>PRK04132 replication factor C small subunit; Provisional
Probab=99.25 E-value=1.5e-10 Score=129.03 Aligned_cols=170 Identities=18% Similarity=0.179 Sum_probs=124.6
Q ss_pred EEEEc--CCCCcHHHHHHHHHHhc-----CCCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhc------CCcEEEEcccc
Q 009974 113 ILLTG--APGTGKTLLAKAIAGEA-----GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKK------APCIIFIDEID 179 (521)
Q Consensus 113 vLL~G--ppGtGKT~la~alA~~~-----~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~------~p~Il~IDEiD 179 (521)
-+..| |++.||||+|+++|+++ +.+++.+|+++..+. ..++.+...+... ...|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 34558 99999999999999997 568999999985332 3455554443322 23599999999
Q ss_pred ccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccC
Q 009974 180 AVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK 259 (521)
Q Consensus 180 ~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~ 259 (521)
.| .....+.|+..|+. ....+.+|.+||.+..+.+++++ |+ ..+.|++|+.++....++..+.+.
T Consensus 641 ~L----------t~~AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~~E 705 (846)
T PRK04132 641 AL----------TQDAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAENE 705 (846)
T ss_pred cC----------CHHHHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHHHhc
Confidence 99 34567788888885 34567888899999999999987 87 689999999999999999888765
Q ss_pred CCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 009974 260 PLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFA 309 (521)
Q Consensus 260 ~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a 309 (521)
++. ++..+..++..+.| +.+..-++++.+.. ....||.+++...
T Consensus 706 gi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~~-----~~~~It~~~V~~~ 750 (846)
T PRK04132 706 GLELTEEGLQAILYIAEG-DMRRAINILQAAAA-----LDDKITDENVFLV 750 (846)
T ss_pred CCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH-----hcCCCCHHHHHHH
Confidence 543 45567888887765 55555566654332 1246888776544
No 187
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.25 E-value=4.2e-11 Score=130.75 Aligned_cols=187 Identities=22% Similarity=0.272 Sum_probs=125.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC--CCEEEEeCchhhhhhhhhhh--HHHH--------HHHHHHHhcCCcEEEEcccc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSEFEEMFVGVGA--RRVR--------SLFQAAKKKAPCIIFIDEID 179 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~--~~~~~i~~~~~~~~~~g~~~--~~i~--------~~f~~a~~~~p~Il~IDEiD 179 (521)
+|||.|+||||||++|+++++.+. .||+.+..........|... ..+. .++..+ ...+|||||++
T Consensus 18 ~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~lDEi~ 94 (589)
T TIGR02031 18 GVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYVDMAN 94 (589)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEeccchh
Confidence 899999999999999999999875 47888875433333333210 0000 011111 12499999999
Q ss_pred ccccCCcCCCcccHHHHHHHHHhhhcCc-----------cCCceEEEeecCCCC---CCCccccCCCccceEEecC-CCC
Q 009974 180 AVGSTRKQWEGHTKKTLHQLLVEMDGFE-----------QNEGIILMAATNLPD---ILDPALTRPGRFDRHIVVP-NPD 244 (521)
Q Consensus 180 ~l~~~~~~~~~~~~~~l~~ll~~l~~~~-----------~~~~vivI~ttn~~~---~ld~al~r~gRf~~~i~~~-~P~ 244 (521)
.+ ...+++.|+..|+.-. ....+.||+|+|..+ .+++++.. ||..++.+. .|+
T Consensus 95 rl----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~ 162 (589)
T TIGR02031 95 LL----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVAS 162 (589)
T ss_pred hC----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCC
Confidence 99 3456667777665321 124688999999765 68888988 999888776 467
Q ss_pred HHHHHHHHHHHhccC-------------------------CCCCcccHHHHHhcC--CCC-CHHHHHHHHHHHHHHHHHh
Q 009974 245 VRGRQEILELYLQDK-------------------------PLADDVDVKAIARGT--PGF-NGADLANLVNIAAIKAAVD 296 (521)
Q Consensus 245 ~~~r~~il~~~l~~~-------------------------~~~~~~~l~~la~~~--~g~-s~~dl~~lv~~A~~~a~~~ 296 (521)
.++|.+|++.++... .+ ++..+..++..+ .|. +.+.-..+++.|...|+.+
T Consensus 163 ~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i-~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~ 241 (589)
T TIGR02031 163 QDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTI-SAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALH 241 (589)
T ss_pred HHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccC-CHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHh
Confidence 788999888765211 01 111122232221 233 3566667888888999999
Q ss_pred CCCccCHHHHHHHHHHHh
Q 009974 297 GGEKLTATELEFAKDRIL 314 (521)
Q Consensus 297 ~~~~it~~~~~~a~~~~~ 314 (521)
+++.|+.+|+..|..-++
T Consensus 242 gr~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 242 GRTEVTEEDLKLAVELVL 259 (589)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998776
No 188
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.24 E-value=4.9e-10 Score=107.61 Aligned_cols=129 Identities=20% Similarity=0.256 Sum_probs=88.0
Q ss_pred CcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCC-------------CCCCCccccCCCccce
Q 009974 170 PCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL-------------PDILDPALTRPGRFDR 236 (521)
Q Consensus 170 p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~-------------~~~ld~al~r~gRf~~ 236 (521)
|.||||||++.| .-..+..|-..++ ++-.-+||.+||+ |..+++.++. |+ .
T Consensus 297 PGVLFIDEVhML----------DiEcFTyL~kalE---S~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl-~ 360 (456)
T KOG1942|consen 297 PGVLFIDEVHML----------DIECFTYLHKALE---SPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL-L 360 (456)
T ss_pred CcceEeeehhhh----------hhHHHHHHHHHhc---CCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--he-e
Confidence 556777776665 1222333333333 2333466667775 3456777766 65 4
Q ss_pred EEecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 009974 237 HIVVPNPDVRGRQEILELYLQDKPLAD-DVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRIL 314 (521)
Q Consensus 237 ~i~~~~P~~~~r~~il~~~l~~~~~~~-~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~~ 314 (521)
+|..-+++.++.++|++...+..++.- +..+..++.....-|-+-..+++.-|...|...+++.|..+|++++-.-.+
T Consensus 361 Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~ 439 (456)
T KOG1942|consen 361 IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELFL 439 (456)
T ss_pred EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHHH
Confidence 666777888999999999887766653 334667777665567777888888888899999999999999998765433
No 189
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=1.5e-10 Score=117.59 Aligned_cols=157 Identities=20% Similarity=0.321 Sum_probs=108.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------------------EEEEeCchhhhhhhhhhhHHHHHHH
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------------------FFYRAGSEFEEMFVGVGARRVRSLF 162 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~~~~------------------------~~~i~~~~~~~~~~g~~~~~i~~~f 162 (521)
.+.|.++||+||+|+|||++|+++|+.+.+. ++.+....- . ...+...+|++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHH
Confidence 5677899999999999999999999977541 222211100 0 011335566665
Q ss_pred HHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEE
Q 009974 163 QAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHI 238 (521)
Q Consensus 163 ~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i 238 (521)
+.+.. +...|++||++|.+ .....|.||+.++. +..++++|.+|+.++.+.|.+++ |+. .+
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m----------~~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~-~~ 160 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAM----------NRNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQ-QQ 160 (328)
T ss_pred HHHhhccccCCCeEEEECChhhC----------CHHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hce-ee
Confidence 55543 34569999999999 45788899999995 44678888999999999999998 884 68
Q ss_pred ecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHH
Q 009974 239 VVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANL 285 (521)
Q Consensus 239 ~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~l 285 (521)
.|++|+.++..+.+...... ..+.+...++....| ++.....+
T Consensus 161 ~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G-sp~~A~~l 203 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG-SPLRALQL 203 (328)
T ss_pred eCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC-CHHHHHHH
Confidence 99999999988888765421 123334455555554 45443333
No 190
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=7e-11 Score=120.48 Aligned_cols=149 Identities=17% Similarity=0.172 Sum_probs=108.7
Q ss_pred CcccccC-cHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC----------------
Q 009974 75 TFKDVKG-CDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP---------------- 137 (521)
Q Consensus 75 ~f~di~G-~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~---------------- 137 (521)
.|++|+| ++.+++.|+..+. ..+.|+.+||+||+|+|||++|+++|+.+.++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~-----------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA-----------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 5889999 8888888888775 35677789999999999999999999976432
Q ss_pred --------EEEEeCchhhhhhhhhhhHHHHHHHHHHH----hcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhc
Q 009974 138 --------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG 205 (521)
Q Consensus 138 --------~~~i~~~~~~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~ 205 (521)
+..+... +. ..+...++++.+.+. .+...|++|||+|.+ .....|.|+..++.
T Consensus 72 ~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~----------~~~a~NaLLK~LEE 136 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM----------TASAANSLLKFLEE 136 (329)
T ss_pred HhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh----------CHHHHHHHHHHhcC
Confidence 1121111 00 012345555555443 233469999999998 45678899999995
Q ss_pred CccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHH
Q 009974 206 FEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILEL 254 (521)
Q Consensus 206 ~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~ 254 (521)
+...+++|.+|+.+..|.+.+++ |. ..++|++|+.++..+.++.
T Consensus 137 --Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 --PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred --CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 45566777788888899999988 77 5899999999888777653
No 191
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.23 E-value=7.6e-11 Score=103.43 Aligned_cols=125 Identities=34% Similarity=0.494 Sum_probs=82.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCC---EEEEeCchhhhhh--------------hhhhhHHHHHHHHHHHhcCCcE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVP---FFYRAGSEFEEMF--------------VGVGARRVRSLFQAAKKKAPCI 172 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~---~~~i~~~~~~~~~--------------~g~~~~~i~~~f~~a~~~~p~I 172 (521)
+..++|+||||||||++++.+|..+..+ ++++++....... ........+..+..+....|.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3579999999999999999999999775 8888887543321 1233456678888888877899
Q ss_pred EEEccccccccCCcCCCcccHHHHHHH---HHhhhcCccCCceEEEeecCC-CCCCCccccCCCccceEEecCCC
Q 009974 173 IFIDEIDAVGSTRKQWEGHTKKTLHQL---LVEMDGFEQNEGIILMAATNL-PDILDPALTRPGRFDRHIVVPNP 243 (521)
Q Consensus 173 l~IDEiD~l~~~~~~~~~~~~~~l~~l---l~~l~~~~~~~~vivI~ttn~-~~~ld~al~r~gRf~~~i~~~~P 243 (521)
|+|||++.+...... ..... ...........+..+|+++|. ....+..+.+ |++..+.++.+
T Consensus 82 iiiDei~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQE-------ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHH-------HHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 999999998543211 11000 000111123455788888886 3334444444 78888877654
No 192
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.23 E-value=2.4e-10 Score=114.37 Aligned_cols=66 Identities=39% Similarity=0.561 Sum_probs=50.9
Q ss_pred CcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEEeCchhh
Q 009974 75 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSEFE 147 (521)
Q Consensus 75 ~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~--~~~~~i~~~~~~ 147 (521)
..+.++|+.++.+..--+++..+..+. ..+++||.||||||||.+|-++|+++| .||+.++++++.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~-------aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKI-------AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred ccccccChHHHHHHHHHHHHHHhcccc-------cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 356889999999999888887765332 346999999999999999999999997 899988887763
No 193
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.22 E-value=2.4e-10 Score=121.42 Aligned_cols=209 Identities=25% Similarity=0.296 Sum_probs=128.1
Q ss_pred CCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC------------------
Q 009974 74 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG------------------ 135 (521)
Q Consensus 74 ~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~------------------ 135 (521)
..|.++.|+..+++.+.-.+ ....+++|+||||+|||++++.++..+.
T Consensus 188 ~d~~~v~Gq~~~~~al~laa--------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA--------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhheec--------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 47999999887765543211 1235799999999999999999987441
Q ss_pred ----------CCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhc
Q 009974 136 ----------VPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG 205 (521)
Q Consensus 136 ----------~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~ 205 (521)
.||.....+.-.....|.+...-...+..|..+ +|||||++.+ ...++..|++.|+.
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~----------~~~~~~~L~~~LE~ 320 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEF----------ERRTLDALREPIES 320 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhC----------CHHHHHHHHHHHHc
Confidence 111111110001112222211222455566555 9999999887 34556666665542
Q ss_pred Cc-----------cCCceEEEeecCCCC---------------------CCCccccCCCccceEEecCCCCHHH------
Q 009974 206 FE-----------QNEGIILMAATNLPD---------------------ILDPALTRPGRFDRHIVVPNPDVRG------ 247 (521)
Q Consensus 206 ~~-----------~~~~vivI~ttn~~~---------------------~ld~al~r~gRf~~~i~~~~P~~~~------ 247 (521)
-. ...++.+|+|+|... .++.+++. |||.++.++.|+.++
T Consensus 321 g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~~~ 398 (506)
T PRK09862 321 GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKTVV 398 (506)
T ss_pred CcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhcccC
Confidence 11 235689999999752 36668888 999999999885321
Q ss_pred ----HHHHHHHHh--------ccCCCCCccc---H----------HH---HHhcCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 009974 248 ----RQEILELYL--------QDKPLADDVD---V----------KA---IARGTPGFNGADLANLVNIAAIKAAVDGGE 299 (521)
Q Consensus 248 ----r~~il~~~l--------~~~~~~~~~~---l----------~~---la~~~~g~s~~dl~~lv~~A~~~a~~~~~~ 299 (521)
...+-+... ++........ + .. -+....|.|.|....+++-|...|..++++
T Consensus 399 ~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~ 478 (506)
T PRK09862 399 PGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSD 478 (506)
T ss_pred CCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 111111110 0000010000 0 11 111334689999999999999999999999
Q ss_pred ccCHHHHHHHHH
Q 009974 300 KLTATELEFAKD 311 (521)
Q Consensus 300 ~it~~~~~~a~~ 311 (521)
.|+.+|+.+|+.
T Consensus 479 ~V~~~hv~eAl~ 490 (506)
T PRK09862 479 IITRQHLQEAVS 490 (506)
T ss_pred CCCHHHHHHHHH
Confidence 999999999986
No 194
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.20 E-value=2.1e-10 Score=118.89 Aligned_cols=141 Identities=26% Similarity=0.402 Sum_probs=86.1
Q ss_pred cccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------EEEEeC----c
Q 009974 76 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------FFYRAG----S 144 (521)
Q Consensus 76 f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~-------~~~i~~----~ 144 (521)
++++.+.++..+.+...+. ..++++|+||||||||++|+.+|..+... ++.++. .
T Consensus 174 l~d~~i~e~~le~l~~~L~--------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 5666666665444433322 13479999999999999999999987431 122221 2
Q ss_pred hhhhhhh--hhhh----HHHHHHHHHHHh--cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhh------------
Q 009974 145 EFEEMFV--GVGA----RRVRSLFQAAKK--KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMD------------ 204 (521)
Q Consensus 145 ~~~~~~~--g~~~----~~i~~~f~~a~~--~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~------------ 204 (521)
++...+. +.+- ..+.++...|.. ..|++||||||+.... .+++..++..++
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani---------~kiFGel~~lLE~~~rg~~~~v~l 310 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL---------SKVFGEVMMLMEHDKRGENWSVPL 310 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH---------HHhhhhhhhhccccccccccceee
Confidence 3332221 1111 123344556654 3589999999997622 222233333222
Q ss_pred --------cCccCCceEEEeecCCCC----CCCccccCCCccceEEecCC
Q 009974 205 --------GFEQNEGIILMAATNLPD----ILDPALTRPGRFDRHIVVPN 242 (521)
Q Consensus 205 --------~~~~~~~vivI~ttn~~~----~ld~al~r~gRf~~~i~~~~ 242 (521)
.+....++.||||+|..+ .+|.|++| ||. .+++.+
T Consensus 311 ~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 311 TYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred eccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 244467899999999987 79999999 995 556654
No 195
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.19 E-value=2.7e-11 Score=107.82 Aligned_cols=110 Identities=30% Similarity=0.395 Sum_probs=69.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhh--hhhhhhHH------HHHHHHHHHhcCCcEEEEcccccccc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM--FVGVGARR------VRSLFQAAKKKAPCIIFIDEIDAVGS 183 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~--~~g~~~~~------i~~~f~~a~~~~p~Il~IDEiD~l~~ 183 (521)
+|+|+||||||||++|+.+|+.++.+++.++++..... ..|...-. ....+..+. ..+++++|||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccC--
Confidence 58999999999999999999999999999988764321 11110000 000000000 14579999999987
Q ss_pred CCcCCCcccHHHHHHHHHhhhcC----------c-cCC------ceEEEeecCCCC----CCCccccCCCcc
Q 009974 184 TRKQWEGHTKKTLHQLLVEMDGF----------E-QNE------GIILMAATNLPD----ILDPALTRPGRF 234 (521)
Q Consensus 184 ~~~~~~~~~~~~l~~ll~~l~~~----------~-~~~------~vivI~ttn~~~----~ld~al~r~gRf 234 (521)
...++..|+..++.- . ... ++.+|+|+|... .+++++++ ||
T Consensus 78 --------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 --------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ---------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred --------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 234444554444421 0 111 489999999988 89999998 87
No 196
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.17 E-value=9.7e-11 Score=107.54 Aligned_cols=120 Identities=25% Similarity=0.344 Sum_probs=78.1
Q ss_pred ccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhh-----
Q 009974 79 VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF----- 150 (521)
Q Consensus 79 i~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~----- 150 (521)
|+|.++..+++.+.+..+... |.+|||+|++||||+++|+++.+.. +.||+.++|+.+....
T Consensus 1 liG~s~~m~~~~~~~~~~a~~----------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS----------DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS----------TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCC----------CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 578888888888877754432 3479999999999999999999865 5799999998875432
Q ss_pred hhhh-------hHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcC-----c----cCCceEE
Q 009974 151 VGVG-------ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF-----E----QNEGIIL 214 (521)
Q Consensus 151 ~g~~-------~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~-----~----~~~~viv 214 (521)
.|.. ......+|..|..+ +||||||+.|. ......|+..++.- . ...++.+
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 137 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLP----------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRI 137 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-----------HHHHHHHHHHHHHSEEECCTSSSEEE--EEE
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhhH----------HHHHHHHHHHHhhchhccccccccccccceE
Confidence 2211 01123577777666 99999999993 34445555555421 1 1236899
Q ss_pred EeecCCC
Q 009974 215 MAATNLP 221 (521)
Q Consensus 215 I~ttn~~ 221 (521)
|++|+.+
T Consensus 138 I~st~~~ 144 (168)
T PF00158_consen 138 IASTSKD 144 (168)
T ss_dssp EEEESS-
T ss_pred EeecCcC
Confidence 9999853
No 197
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.2e-10 Score=113.15 Aligned_cols=126 Identities=33% Similarity=0.418 Sum_probs=86.4
Q ss_pred ccCcHHHHHHHHHHHHH----hcCchhhhhcCCCC-CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh-hhhh
Q 009974 79 VKGCDDAKQELVEVVEY----LKNPSKFTRLGGKL-PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-MFVG 152 (521)
Q Consensus 79 i~G~~~~k~~L~~~v~~----l~~~~~~~~~g~~~-p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~-~~~g 152 (521)
++|++.+|+.|.-.+-. +.+... .-.... -.+|||.||+|||||+||+.+|+.+++||...++..+.+ .|+|
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~--~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKED--NDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCC--CCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 78999988877544322 111100 000111 247999999999999999999999999999999988865 5888
Q ss_pred hhhHHH-HHHHHHHHh----cCCcEEEEccccccccCCcCCC----cccHHHHHHHHHhhhcC
Q 009974 153 VGARRV-RSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGF 206 (521)
Q Consensus 153 ~~~~~i-~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~----~~~~~~l~~ll~~l~~~ 206 (521)
+..+++ ..++..|.. ....|++|||||.+.++..+.+ -..+.+...||..++|.
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 765543 444444321 1245999999999988765432 13466778889888863
No 198
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=9.4e-11 Score=120.45 Aligned_cols=209 Identities=25% Similarity=0.332 Sum_probs=120.9
Q ss_pred CCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC------------------
Q 009974 74 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG------------------ 135 (521)
Q Consensus 74 ~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~------------------ 135 (521)
..|.||+|++.+|+.|..... | .+++|++||||||||++|+.+..-+-
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAA-----------G---gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g 241 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAA-----------G---GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAG 241 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHh-----------c---CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcc
Confidence 379999999999998876654 1 35899999999999999999865330
Q ss_pred -----------CCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhh
Q 009974 136 -----------VPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMD 204 (521)
Q Consensus 136 -----------~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~ 204 (521)
.||..-..+.-....+|.+...--.-...|. ..||||||+-.+ ..++++.|.+-|+
T Consensus 242 ~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH---~GVLFLDElpef----------~~~iLe~LR~PLE 308 (490)
T COG0606 242 DLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAH---NGVLFLDELPEF----------KRSILEALREPLE 308 (490)
T ss_pred cccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeec---CCEEEeeccchh----------hHHHHHHHhCccc
Confidence 1111111110011111111000000011111 249999998665 4577777777666
Q ss_pred cCc-----------cCCceEEEeecCCC-----------------------CCCCccccCCCccceEEecCCCCHHHHH-
Q 009974 205 GFE-----------QNEGIILMAATNLP-----------------------DILDPALTRPGRFDRHIVVPNPDVRGRQ- 249 (521)
Q Consensus 205 ~~~-----------~~~~vivI~ttn~~-----------------------~~ld~al~r~gRf~~~i~~~~P~~~~r~- 249 (521)
.-. -..++.+|+++|.. ..|...+++ |||..+.++.++..++.
T Consensus 309 ~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~~e~~~ 386 (490)
T COG0606 309 NGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSAGELIR 386 (490)
T ss_pred cCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCHHHhhc
Confidence 321 12457888888853 123445566 89999998887643331
Q ss_pred -------------HHHHHH----hccCCC--CC----------------cccHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 009974 250 -------------EILELY----LQDKPL--AD----------------DVDVKAIARGTPGFNGADLANLVNIAAIKAA 294 (521)
Q Consensus 250 -------------~il~~~----l~~~~~--~~----------------~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~ 294 (521)
.+++.+ .+.... +. +.++...+-..-++|.+....+++-|...|-
T Consensus 387 ~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTiAD 466 (490)
T COG0606 387 QVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVARTIAD 466 (490)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHhhhhc
Confidence 111111 111111 11 1122222333445777778888888877777
Q ss_pred HhCCCccCHHHHHHHHH
Q 009974 295 VDGGEKLTATELEFAKD 311 (521)
Q Consensus 295 ~~~~~~it~~~~~~a~~ 311 (521)
.++.+.|...|+.+|+.
T Consensus 467 L~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 467 LEGSEQIERSHLAEAIS 483 (490)
T ss_pred ccCcchhhHHHHHHHHh
Confidence 77878888888887764
No 199
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.12 E-value=3.8e-10 Score=120.22 Aligned_cols=203 Identities=22% Similarity=0.257 Sum_probs=124.5
Q ss_pred CcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhh
Q 009974 75 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV 151 (521)
Q Consensus 75 ~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~ 151 (521)
.+.+++|.....+.+.+.+..+... ..+++|+|++||||+++|+++.... +.||+.++|..+.....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPS----------DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 5667888888777777766543322 2369999999999999999998765 57999999988744322
Q ss_pred hhh------------hHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc---------cCC
Q 009974 152 GVG------------ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNE 210 (521)
Q Consensus 152 g~~------------~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~---------~~~ 210 (521)
... .......|..+ ...+|||||++.|. ......|+..++.-. ...
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~----------~~~q~~l~~~l~~~~~~~~~~~~~~~~ 273 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLP----------LNLQAKLLRFLQERVIERLGGREEIPV 273 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCC----------HHHHHHHHHHHhhCeEEeCCCCceeee
Confidence 110 00001112222 24599999999993 334445555554211 123
Q ss_pred ceEEEeecCCCC-------CCCccccCCCccceEEecCCCCHHHHHH----HHHHHhccC----CC----CCcccHHHHH
Q 009974 211 GIILMAATNLPD-------ILDPALTRPGRFDRHIVVPNPDVRGRQE----ILELYLQDK----PL----ADDVDVKAIA 271 (521)
Q Consensus 211 ~vivI~ttn~~~-------~ld~al~r~gRf~~~i~~~~P~~~~r~~----il~~~l~~~----~~----~~~~~l~~la 271 (521)
++.+|++|+..- .+.+.|.. |+. .+.+..|...+|.+ ++++++... +. -++..+..+.
T Consensus 274 ~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 350 (445)
T TIGR02915 274 DVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALE 350 (445)
T ss_pred ceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 578888887652 22222322 332 45667777777765 555555331 11 1233466677
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 009974 272 RGTPGFNGADLANLVNIAAIKAAVDGGEKLTATEL 306 (521)
Q Consensus 272 ~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~ 306 (521)
.+..-.+.++|++++++|...+ ....|+.+++
T Consensus 351 ~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l 382 (445)
T TIGR02915 351 AHAWPGNVRELENKVKRAVIMA---EGNQITAEDL 382 (445)
T ss_pred hCCCCChHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 7665567889999998877543 4567777765
No 200
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.11 E-value=6.4e-10 Score=108.40 Aligned_cols=199 Identities=18% Similarity=0.181 Sum_probs=131.7
Q ss_pred cccccccCCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEE--
Q 009974 62 ELNKEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF-- 139 (521)
Q Consensus 62 ~~~~~~~~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~-- 139 (521)
..+-++++..++..+.|+++++++...+.++.+. .+.| +.|+|||||||||+...+.|+.+-.|.-
T Consensus 26 ~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~-----------~~lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~~ 93 (360)
T KOG0990|consen 26 QYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGM-----------PGLP-HLLFYGPPGTGKTSTILANARDFYSPHPTT 93 (360)
T ss_pred ccCCCCccCCCCchhhhHhcCCchhhHHHHhccC-----------CCCC-cccccCCCCCCCCCchhhhhhhhcCCCCch
Confidence 3456677888888999999999987777766331 2344 8999999999999999999999877511
Q ss_pred ----EEeCchhhhhhhhhhhHHHHHHHHHHHh-------cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCcc
Q 009974 140 ----YRAGSEFEEMFVGVGARRVRSLFQAAKK-------KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ 208 (521)
Q Consensus 140 ----~i~~~~~~~~~~g~~~~~i~~~f~~a~~-------~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~ 208 (521)
.++.++-.+. + ..+..-..|..++. ..+..+++||.|++ .....|+|-+.++.+..
T Consensus 94 ~m~lelnaSd~rgi--d-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM----------T~~AQnALRRviek~t~ 160 (360)
T KOG0990|consen 94 SMLLELNASDDRGI--D-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM----------TRDAQNALRRVIEKYTA 160 (360)
T ss_pred hHHHHhhccCccCC--c-chHHHHHHHHhhccceeccccCceeEEEecchhHh----------hHHHHHHHHHHHHHhcc
Confidence 1122211110 0 01222334555543 25679999999999 34556666666765544
Q ss_pred CCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCccc-HHHHHhcCCCCCHHHHHHHHH
Q 009974 209 NEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVD-VKAIARGTPGFNGADLANLVN 287 (521)
Q Consensus 209 ~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~-l~~la~~~~g~s~~dl~~lv~ 287 (521)
+ +.++..+|++..+.|++++ ||. .+.|.+-+...-...+.+++.........+ ...+++ .|-+|.+..++
T Consensus 161 n--~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r----~s~gDmr~a~n 231 (360)
T KOG0990|consen 161 N--TRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGR----LSVGDMRVALN 231 (360)
T ss_pred c--eEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHH----HhHHHHHHHHH
Confidence 4 4555678999999999987 774 566777777788888888887655443322 233333 45667777766
Q ss_pred HHHHHHH
Q 009974 288 IAAIKAA 294 (521)
Q Consensus 288 ~A~~~a~ 294 (521)
.....+.
T Consensus 232 ~Lqs~~~ 238 (360)
T KOG0990|consen 232 YLQSILK 238 (360)
T ss_pred HHHHHHH
Confidence 5554443
No 201
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=4.8e-09 Score=105.91 Aligned_cols=130 Identities=16% Similarity=0.284 Sum_probs=96.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------------------EEEEeCchhhhhhhhhhhHHHHHHH
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------------------FFYRAGSEFEEMFVGVGARRVRSLF 162 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~~~~------------------------~~~i~~~~~~~~~~g~~~~~i~~~f 162 (521)
.+.|.++||+||+|+||+++|+++|+.+.+. ++.+...+ + ...+...+|++.
T Consensus 21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~--~~I~id~iR~l~ 96 (325)
T PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--N--KDIGVDQVREIN 96 (325)
T ss_pred CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--C--CCCCHHHHHHHH
Confidence 5678899999999999999999999976431 11121100 0 012345566655
Q ss_pred HHHH----hcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEE
Q 009974 163 QAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHI 238 (521)
Q Consensus 163 ~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i 238 (521)
+.+. .+...|++||++|.| .....|.||+.++. +..++++|.+|+.++.|.|.+++ |. ..+
T Consensus 97 ~~~~~~~~~g~~KV~iI~~a~~m----------~~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~ 161 (325)
T PRK06871 97 EKVSQHAQQGGNKVVYIQGAERL----------TEAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QTW 161 (325)
T ss_pred HHHhhccccCCceEEEEechhhh----------CHHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eEE
Confidence 5543 234469999999999 46788999999995 66678888899999999999988 87 578
Q ss_pred ecCCCCHHHHHHHHHHH
Q 009974 239 VVPNPDVRGRQEILELY 255 (521)
Q Consensus 239 ~~~~P~~~~r~~il~~~ 255 (521)
.|++|+.++..+.+...
T Consensus 162 ~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQ 178 (325)
T ss_pred eCCCCCHHHHHHHHHHH
Confidence 99999999888877654
No 202
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.08 E-value=6e-10 Score=101.88 Aligned_cols=133 Identities=23% Similarity=0.374 Sum_probs=89.4
Q ss_pred CcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-----------------------
Q 009974 81 GCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP----------------------- 137 (521)
Q Consensus 81 G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~----------------------- 137 (521)
|++++++.|.+.+. ..+.|..+||+||+|+||+++|+++|+.+-..
T Consensus 1 gq~~~~~~L~~~~~-----------~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIK-----------SGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHH-----------CTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHH-----------cCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 77888888888776 35678889999999999999999999976321
Q ss_pred EEEEeCchhhhhhhhhhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceE
Q 009974 138 FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGII 213 (521)
Q Consensus 138 ~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vi 213 (521)
++.++...... .-..+.++.+...... +...|++|||+|.| .....|.||..|+. +..+++
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l----------~~~a~NaLLK~LEe--pp~~~~ 134 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL----------TEEAQNALLKTLEE--PPENTY 134 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-----------HHHHHHHHHHHHS--TTTTEE
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh----------hHHHHHHHHHHhcC--CCCCEE
Confidence 22222221100 1123455655555432 23569999999999 56788999999995 456788
Q ss_pred EEeecCCCCCCCccccCCCccceEEecCC
Q 009974 214 LMAATNLPDILDPALTRPGRFDRHIVVPN 242 (521)
Q Consensus 214 vI~ttn~~~~ld~al~r~gRf~~~i~~~~ 242 (521)
+|.+|+.++.|-+.+++ |. ..+.|++
T Consensus 135 fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 135 FILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp EEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred EEEEECChHHChHHHHh--hc-eEEecCC
Confidence 88899999999999988 77 4566554
No 203
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.07 E-value=1.3e-09 Score=110.61 Aligned_cols=158 Identities=27% Similarity=0.401 Sum_probs=101.7
Q ss_pred CCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEE-----
Q 009974 74 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYR----- 141 (521)
Q Consensus 74 ~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~-------~~~~~~i----- 141 (521)
..|.-++|++..|..|--.. -+|. . .|+||.|+.|||||+++|+|+.-+ |+||-.-
T Consensus 14 ~pf~aivGqd~lk~aL~l~a---v~P~----i-----ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~ 81 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNA---VDPQ----I-----GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPE 81 (423)
T ss_pred cchhhhcCchHHHHHHhhhh---cccc----c-----ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChh
Confidence 46888999999876664331 1221 2 389999999999999999999866 2322100
Q ss_pred -eCchh-------------------hhhhhhhhhHHH------HH------------HHHHHHhcCCcEEEEcccccccc
Q 009974 142 -AGSEF-------------------EEMFVGVGARRV------RS------------LFQAAKKKAPCIIFIDEIDAVGS 183 (521)
Q Consensus 142 -~~~~~-------------------~~~~~g~~~~~i------~~------------~f~~a~~~~p~Il~IDEiD~l~~ 183 (521)
.|..+ ...-.|.++.++ .+ ++..|. ..|+++||+..|
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An---RGIlYvDEvnlL-- 156 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN---RGILYVDEVNLL-- 156 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc---CCEEEEeccccc--
Confidence 01111 111112222211 11 222222 249999999988
Q ss_pred CCcCCCcccHHHHHHHHHhhhc-----------CccCCceEEEeecCCCC-CCCccccCCCccceEEecCCC-CHHHHHH
Q 009974 184 TRKQWEGHTKKTLHQLLVEMDG-----------FEQNEGIILMAATNLPD-ILDPALTRPGRFDRHIVVPNP-DVRGRQE 250 (521)
Q Consensus 184 ~~~~~~~~~~~~l~~ll~~l~~-----------~~~~~~vivI~ttn~~~-~ld~al~r~gRf~~~i~~~~P-~~~~r~~ 250 (521)
..+.++.||..+.. +....++++|+|+|.-+ .|-+.|+. ||...+.+..| +.++|.+
T Consensus 157 --------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 157 --------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred --------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHH
Confidence 45667777766542 12345699999999764 67888888 99999988765 7888999
Q ss_pred HHHHHhcc
Q 009974 251 ILELYLQD 258 (521)
Q Consensus 251 il~~~l~~ 258 (521)
|+++-+..
T Consensus 227 Ii~r~~~f 234 (423)
T COG1239 227 IIRRRLAF 234 (423)
T ss_pred HHHHHHHh
Confidence 88876643
No 204
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.06 E-value=8.1e-10 Score=118.12 Aligned_cols=205 Identities=22% Similarity=0.276 Sum_probs=124.0
Q ss_pred CcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhh
Q 009974 75 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV 151 (521)
Q Consensus 75 ~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~ 151 (521)
.+.+++|.+.....+.+.+..+... ..+++++|++||||+++|+++.... +.||+.++|..+.....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALS----------QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCC----------CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 3556788777766666655543322 2379999999999999999997754 57999999988754321
Q ss_pred hh-----hh-------HHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc---------cCC
Q 009974 152 GV-----GA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNE 210 (521)
Q Consensus 152 g~-----~~-------~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~---------~~~ 210 (521)
.. .. ......|..+. ..+|||||+|.+. ......|+..++.-. ...
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~ld~i~~l~----------~~~q~~L~~~l~~~~~~~~~~~~~~~~ 277 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERAN---EGTLLLDEIGEMP----------LVLQAKLLRILQEREFERIGGHQTIKV 277 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEECC---CCEEEEechhhCC----------HHHHHHHHHHHhcCcEEeCCCCceeee
Confidence 10 00 00011222222 3599999999993 234455555554211 123
Q ss_pred ceEEEeecCCCCCCCccccCCCccce-------EEecCCCCHHHHHH----HHHHHhccC----CC----CCcccHHHHH
Q 009974 211 GIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----PL----ADDVDVKAIA 271 (521)
Q Consensus 211 ~vivI~ttn~~~~ld~al~r~gRf~~-------~i~~~~P~~~~r~~----il~~~l~~~----~~----~~~~~l~~la 271 (521)
++.+|+|||.+-. .+.+.|+|.. .+.+..|...+|.+ ++.+++... .. -.+..+..+.
T Consensus 278 ~~rii~~t~~~l~---~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 354 (457)
T PRK11361 278 DIRIIAATNRDLQ---AMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLT 354 (457)
T ss_pred ceEEEEeCCCCHH---HHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence 4788999886421 2222334432 56677788887764 444554321 11 1233356666
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 009974 272 RGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEF 308 (521)
Q Consensus 272 ~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~ 308 (521)
.+..-.+.+++++++++|...+ ....|+.+++..
T Consensus 355 ~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~~l~~ 388 (457)
T PRK11361 355 AWSWPGNIRELSNVIERAVVMN---SGPIIFSEDLPP 388 (457)
T ss_pred cCCCCCcHHHHHHHHHHHHHhC---CCCcccHHHChH
Confidence 6665568889999998877543 456788877753
No 205
>PRK08116 hypothetical protein; Validated
Probab=99.05 E-value=9.4e-10 Score=108.83 Aligned_cols=123 Identities=22% Similarity=0.313 Sum_probs=74.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhhhh----hhHHHHHHHHHHHhcCCcEEEEccccccc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGV----GARRVRSLFQAAKKKAPCIIFIDEIDAVG 182 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~g~----~~~~i~~~f~~a~~~~p~Il~IDEiD~l~ 182 (521)
+.+++|+||||||||+||.++++++ +.++++++.+++...+... .......+++... ...+|+|||++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 3579999999999999999999975 7899999988876553321 1112223333333 23599999986431
Q ss_pred cCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCC-CC----CCccccCCCcc---ceEEecCCCCH
Q 009974 183 STRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP-DI----LDPALTRPGRF---DRHIVVPNPDV 245 (521)
Q Consensus 183 ~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~-~~----ld~al~r~gRf---~~~i~~~~P~~ 245 (521)
. .......|+..++....+ +..+|.|||.+ .. ++..+.+ |+ ...+.++.||.
T Consensus 192 ~--------t~~~~~~l~~iin~r~~~-~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 D--------TEWAREKVYNIIDSRYRK-GLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred C--------CHHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 1 122334455555543222 33466677765 22 3555554 53 33566666665
No 206
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.03 E-value=2.5e-09 Score=114.73 Aligned_cols=205 Identities=22% Similarity=0.267 Sum_probs=127.3
Q ss_pred CcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhh
Q 009974 75 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV 151 (521)
Q Consensus 75 ~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~ 151 (521)
.+.+++|.....+.+.+.+..+... ...++++|++|||||++|+++.... +.||+.++|..+.....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRS----------SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhcc----------CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 4678899988877777766643322 2369999999999999999998875 57999999988743211
Q ss_pred hh-----hh-------HHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc---------cCC
Q 009974 152 GV-----GA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNE 210 (521)
Q Consensus 152 g~-----~~-------~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~---------~~~ 210 (521)
.. .. ......|..+ ....|||||+|.+. ......|+..++.-. ...
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~----------~~~q~~L~~~l~~~~~~~~~~~~~~~~ 272 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMP----------LDVQTRLLRVLADGQFYRVGGYAPVKV 272 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCC----------HHHHHHHHHHHhcCcEEeCCCCCeEEe
Confidence 10 00 0001112222 23589999999993 234445555554211 123
Q ss_pred ceEEEeecCCCC-------CCCccccCCCccceEEecCCCCHHHHHH----HHHHHhccC----CC----CCcccHHHHH
Q 009974 211 GIILMAATNLPD-------ILDPALTRPGRFDRHIVVPNPDVRGRQE----ILELYLQDK----PL----ADDVDVKAIA 271 (521)
Q Consensus 211 ~vivI~ttn~~~-------~ld~al~r~gRf~~~i~~~~P~~~~r~~----il~~~l~~~----~~----~~~~~l~~la 271 (521)
++.+|+||+..- .+.+.|.. ||. .+.+..|...+|.+ ++++|+... +. .++..+..|.
T Consensus 273 ~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 349 (469)
T PRK10923 273 DVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALT 349 (469)
T ss_pred eEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence 468888887542 23333333 442 45566666666554 666665431 11 1233466777
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 009974 272 RGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEF 308 (521)
Q Consensus 272 ~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~ 308 (521)
.+..-.+.++|+++++++...+ .+..|+.+++..
T Consensus 350 ~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~ 383 (469)
T PRK10923 350 RLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPG 383 (469)
T ss_pred hCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcH
Confidence 7766668899999998877654 456788888753
No 207
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.03 E-value=7e-09 Score=110.45 Aligned_cols=194 Identities=18% Similarity=0.234 Sum_probs=129.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEEeCchhhhh---h-------hhhh------hHHHHHHHHHH
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA----------GVPFFYRAGSEFEEM---F-------VGVG------ARRVRSLFQAA 165 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~----------~~~~~~i~~~~~~~~---~-------~g~~------~~~i~~~f~~a 165 (521)
.++++|-||||||.+++.+-+++ ..+++.+|+-.+.+. | .|.. ...+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 78999999999999999998755 246788887655332 1 1111 12223333311
Q ss_pred -HhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCC----CccccCCCccc-eEEe
Q 009974 166 -KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL----DPALTRPGRFD-RHIV 239 (521)
Q Consensus 166 -~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~l----d~al~r~gRf~-~~i~ 239 (521)
....++||+|||+|.|... .+.+++.++.+-. .++.+++||+..|..+.. .....+ |++ .++.
T Consensus 504 k~~~~~~VvLiDElD~Lvtr-------~QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~tRi~ 572 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTR-------SQDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSS--RLGLTRIC 572 (767)
T ss_pred CCCCCCEEEEeccHHHHhcc-------cHHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhh--hccceeee
Confidence 1235789999999999764 3567777776544 356778888887765432 222222 554 3889
Q ss_pred cCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCC--HHHHHHHHHHHHHHHHHhCC-------CccCHHHHHHHH
Q 009974 240 VPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFN--GADLANLVNIAAIKAAVDGG-------EKLTATELEFAK 310 (521)
Q Consensus 240 ~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s--~~dl~~lv~~A~~~a~~~~~-------~~it~~~~~~a~ 310 (521)
|.+++..+..+|+...+.....-.+...+-+|++....| .+..-.+|++|...|..+.. ..|++.|+.+|+
T Consensus 573 F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai 652 (767)
T KOG1514|consen 573 FQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAI 652 (767)
T ss_pred cCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHH
Confidence 999999999999999997763333334555555544344 35566788888888876655 568889999998
Q ss_pred HHHhcC
Q 009974 311 DRILMG 316 (521)
Q Consensus 311 ~~~~~~ 316 (521)
+.++..
T Consensus 653 ~em~~~ 658 (767)
T KOG1514|consen 653 NEMLAS 658 (767)
T ss_pred HHHhhh
Confidence 877643
No 208
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.03 E-value=6.1e-10 Score=102.56 Aligned_cols=110 Identities=26% Similarity=0.324 Sum_probs=72.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC----CEEEEeCchhhhhhhhhhhHHHHHHHHHH----HhcCCcEEEEccccccc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGV----PFFYRAGSEFEEMFVGVGARRVRSLFQAA----KKKAPCIIFIDEIDAVG 182 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~----~~~~i~~~~~~~~~~g~~~~~i~~~f~~a----~~~~p~Il~IDEiD~l~ 182 (521)
.++||+||+|||||.+|+++|+.+.. +++.++++.+... +.....+..++..+ ......||||||||...
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 47999999999999999999999996 9999999998761 11111222222211 00111399999999997
Q ss_pred cCCcCCC-cccHHHHHHHHHhhhcCc---------cCCceEEEeecCCCC
Q 009974 183 STRKQWE-GHTKKTLHQLLVEMDGFE---------QNEGIILMAATNLPD 222 (521)
Q Consensus 183 ~~~~~~~-~~~~~~l~~ll~~l~~~~---------~~~~vivI~ttn~~~ 222 (521)
+..+... -....+.+.||+.+++-. +-.+++||+|+|.-.
T Consensus 82 ~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 82 PSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 6422211 123467778888776421 124689999999654
No 209
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.03 E-value=5.8e-09 Score=116.03 Aligned_cols=131 Identities=21% Similarity=0.145 Sum_probs=77.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC-------CCEEEEeCchhhhhhh-hhhhHHH-HHHHHHHHhcCCcEEEEccccc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAG-------VPFFYRAGSEFEEMFV-GVGARRV-RSLFQAAKKKAPCIIFIDEIDA 180 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~-------~~~~~i~~~~~~~~~~-g~~~~~i-~~~f~~a~~~~p~Il~IDEiD~ 180 (521)
.-+|||+|+||||||.+|+++++... .++..+.+........ ..+...+ ...+..|. ..+++|||+|.
T Consensus 492 dihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAd---gGtL~IDEidk 568 (915)
T PTZ00111 492 IINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLAN---GGVCCIDELDK 568 (915)
T ss_pred CceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcC---CCeEEecchhh
Confidence 44799999999999999999998543 3444444433211000 0000000 01111222 24999999999
Q ss_pred cccCCcCCCcccHHHHHHHHHhhhcC-----------ccCCceEEEeecCCCC-------------CCCccccCCCccce
Q 009974 181 VGSTRKQWEGHTKKTLHQLLVEMDGF-----------EQNEGIILMAATNLPD-------------ILDPALTRPGRFDR 236 (521)
Q Consensus 181 l~~~~~~~~~~~~~~l~~ll~~l~~~-----------~~~~~vivI~ttn~~~-------------~ld~al~r~gRf~~ 236 (521)
+. ......|+..|+.- .-+.++.||||+|... .|++++++ |||.
T Consensus 569 ms----------~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDL 636 (915)
T PTZ00111 569 CH----------NESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDL 636 (915)
T ss_pred CC----------HHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcE
Confidence 82 33444555555421 1235689999999742 46788998 9998
Q ss_pred EE-ecCCCCHHHHHHHHHHH
Q 009974 237 HI-VVPNPDVRGRQEILELY 255 (521)
Q Consensus 237 ~i-~~~~P~~~~r~~il~~~ 255 (521)
.+ .++.|+.+.=..|.++.
T Consensus 637 If~l~D~~d~~~D~~lA~hI 656 (915)
T PTZ00111 637 IYLVLDHIDQDTDQLISLSI 656 (915)
T ss_pred EEEecCCCChHHHHHHHHHH
Confidence 65 45667766544544443
No 210
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=2.1e-09 Score=109.32 Aligned_cols=134 Identities=19% Similarity=0.251 Sum_probs=97.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE-------------------------EEEeCchhh--------------
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF-------------------------FYRAGSEFE-------------- 147 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~~~~~-------------------------~~i~~~~~~-------------- 147 (521)
.+.|.++||+||+|+||+++|+++|+.+.+.- ..+......
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 46788999999999999999999998775421 111111000
Q ss_pred ----hh----h-hhhhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEE
Q 009974 148 ----EM----F-VGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIL 214 (521)
Q Consensus 148 ----~~----~-~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~viv 214 (521)
+. . ...+...++.+.+.+.. +...|++||++|.| .....|.||+.++ .+..++++
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m----------~~~AaNaLLKtLE--EPp~~t~f 165 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL----------NVAAANALLKTLE--EPPPGTVF 165 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc----------CHHHHHHHHHHhc--CCCcCcEE
Confidence 00 0 01123456666555432 23459999999999 4678899999999 46777889
Q ss_pred EeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHH
Q 009974 215 MAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELY 255 (521)
Q Consensus 215 I~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~ 255 (521)
|.+|++++.|.|.+++ |+ ..+.|++|+.++..+.+...
T Consensus 166 iL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 166 LLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 9999999999999998 88 68999999999988888653
No 211
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.02 E-value=5.1e-09 Score=105.96 Aligned_cols=82 Identities=17% Similarity=0.145 Sum_probs=57.4
Q ss_pred Ccc-cccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-------CEEEEeC---
Q 009974 75 TFK-DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-------PFFYRAG--- 143 (521)
Q Consensus 75 ~f~-di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~-------~~~~i~~--- 143 (521)
-|+ ++.|+++++.++-+.+..... . .....+.++|+||||||||++|++|++.++. |++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~-----g-~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~ 121 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQ-----G-LEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGE 121 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHh-----c-CCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCC
Confidence 477 999999997776665544221 0 1223467899999999999999999999976 8998877
Q ss_pred -chhhhhhhhhhhHHHHHHH
Q 009974 144 -SEFEEMFVGVGARRVRSLF 162 (521)
Q Consensus 144 -~~~~~~~~g~~~~~i~~~f 162 (521)
+.+.+...+......+..|
T Consensus 122 ~sp~~e~Pl~l~p~~~r~~~ 141 (361)
T smart00763 122 ESPMHEDPLHLFPDELREDL 141 (361)
T ss_pred CCCCccCCcccCCHHHHHHH
Confidence 5555444444444444444
No 212
>PRK15115 response regulator GlrR; Provisional
Probab=99.01 E-value=1.2e-09 Score=116.53 Aligned_cols=178 Identities=22% Similarity=0.306 Sum_probs=110.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhhhhh-----h-------HHHHHHHHHHHhcCCcEEEEc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVG-----A-------RRVRSLFQAAKKKAPCIIFID 176 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~g~~-----~-------~~i~~~f~~a~~~~p~Il~ID 176 (521)
.++|+|++|||||++|+++.... +.||+.++|..+........ . ......|..+ ...+||||
T Consensus 159 ~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~ 235 (444)
T PRK15115 159 SVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAA---EGGTLFLD 235 (444)
T ss_pred eEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEEC---CCCEEEEE
Confidence 69999999999999999998864 57999999987744321110 0 0000112222 23599999
Q ss_pred cccccccCCcCCCcccHHHHHHHHHhhhcCc---------cCCceEEEeecCCCCCCCccccCCCccce-------EEec
Q 009974 177 EIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGIILMAATNLPDILDPALTRPGRFDR-------HIVV 240 (521)
Q Consensus 177 EiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~---------~~~~vivI~ttn~~~~ld~al~r~gRf~~-------~i~~ 240 (521)
|+|.|. ......|+..++.-. ...++.+|+||+.+ ++..+. .|+|.. .+.+
T Consensus 236 ~i~~l~----------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~-~~~f~~~l~~~l~~~~i 302 (444)
T PRK15115 236 EIGDMP----------APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMA-RGEFREDLYYRLNVVSL 302 (444)
T ss_pred ccccCC----------HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHH-cCCccHHHHHhhceeee
Confidence 999993 234445555554211 12357888888853 333332 245522 5667
Q ss_pred CCCCHHHHHH----HHHHHhccC----C--C--CCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 009974 241 PNPDVRGRQE----ILELYLQDK----P--L--ADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEF 308 (521)
Q Consensus 241 ~~P~~~~r~~----il~~~l~~~----~--~--~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~ 308 (521)
..|...+|.+ ++++++... . . -++..+..+..+....+.+++++++++|...+ ....|+.+++..
T Consensus 303 ~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~---~~~~i~~~~l~~ 379 (444)
T PRK15115 303 KIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT---SSPVISDALVEQ 379 (444)
T ss_pred cCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCccChhhhhh
Confidence 7788888864 445555431 1 1 13444677777775568889999998876543 456788877753
No 213
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=1.1e-08 Score=103.03 Aligned_cols=134 Identities=19% Similarity=0.275 Sum_probs=93.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC---------------------EEEEe--Cchhhhh-hhhhhhHHHHHH
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP---------------------FFYRA--GSEFEEM-FVGVGARRVRSL 161 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~~~~---------------------~~~i~--~~~~~~~-~~g~~~~~i~~~ 161 (521)
..+.|.++||+||+|+||+++|.++|+.+.+. ++.+. ...-..+ ....+...++++
T Consensus 22 ~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l 101 (319)
T PRK08769 22 AGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREI 101 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHH
Confidence 35678899999999999999999999866331 11110 0000000 001124456666
Q ss_pred HHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceE
Q 009974 162 FQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRH 237 (521)
Q Consensus 162 f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~ 237 (521)
.+.+.. +...|++||++|.| .....|.||+.++. +..++++|.+|+.++.|.|.+++ |+ ..
T Consensus 102 ~~~~~~~p~~g~~kV~iI~~ae~m----------~~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RC-q~ 166 (319)
T PRK08769 102 SQKLALTPQYGIAQVVIVDPADAI----------NRAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RC-QR 166 (319)
T ss_pred HHHHhhCcccCCcEEEEeccHhhh----------CHHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hh-eE
Confidence 555433 23359999999999 45688899999995 45567778888999999999998 88 57
Q ss_pred EecCCCCHHHHHHHHHH
Q 009974 238 IVVPNPDVRGRQEILEL 254 (521)
Q Consensus 238 i~~~~P~~~~r~~il~~ 254 (521)
+.|+.|+.++....+..
T Consensus 167 i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 167 LEFKLPPAHEALAWLLA 183 (319)
T ss_pred eeCCCcCHHHHHHHHHH
Confidence 88999999887777754
No 214
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=9.3e-09 Score=104.73 Aligned_cols=131 Identities=16% Similarity=0.208 Sum_probs=95.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------------------EEEEeCchhhhhhhhhhhHHHHHH
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------------------FFYRAGSEFEEMFVGVGARRVRSL 161 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~~~~------------------------~~~i~~~~~~~~~~g~~~~~i~~~ 161 (521)
..+.|.++||+||+|+||+++|.++|+.+-+. ++.+....- . ...+...+|.+
T Consensus 20 ~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~--~~I~idqiR~l 96 (334)
T PRK07993 20 AGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-K--SSLGVDAVREV 96 (334)
T ss_pred cCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-c--ccCCHHHHHHH
Confidence 35678899999999999999999999976331 111111000 0 01223455655
Q ss_pred HHHHH----hcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceE
Q 009974 162 FQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRH 237 (521)
Q Consensus 162 f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~ 237 (521)
.+.+. .+...|++||++|.| .....|.||+.++. +..+.++|.+|+.++.|.|.+++ |.. .
T Consensus 97 ~~~~~~~~~~g~~kV~iI~~ae~m----------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~ 161 (334)
T PRK07993 97 TEKLYEHARLGGAKVVWLPDAALL----------TDAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR-L 161 (334)
T ss_pred HHHHhhccccCCceEEEEcchHhh----------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-c
Confidence 55443 344569999999999 56788999999995 56778888899999999999988 885 6
Q ss_pred EecCCCCHHHHHHHHHH
Q 009974 238 IVVPNPDVRGRQEILEL 254 (521)
Q Consensus 238 i~~~~P~~~~r~~il~~ 254 (521)
+.|++|+.++....+..
T Consensus 162 ~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 162 HYLAPPPEQYALTWLSR 178 (334)
T ss_pred ccCCCCCHHHHHHHHHH
Confidence 79999998888777654
No 215
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=4.3e-09 Score=103.18 Aligned_cols=81 Identities=26% Similarity=0.360 Sum_probs=59.6
Q ss_pred cEEEEccccccccCCcCCC--cccHHHHHHHHHhhhcC--------ccCCceEEEeec----CCCCCCCccccCCCccce
Q 009974 171 CIIFIDEIDAVGSTRKQWE--GHTKKTLHQLLVEMDGF--------EQNEGIILMAAT----NLPDILDPALTRPGRFDR 236 (521)
Q Consensus 171 ~Il~IDEiD~l~~~~~~~~--~~~~~~l~~ll~~l~~~--------~~~~~vivI~tt----n~~~~ld~al~r~gRf~~ 236 (521)
.|+||||||.++.+.+.+. -+.+.+...||-.++|. -..+.+++|++. ..|++|-|.|. |||.-
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRfPI 329 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRFPI 329 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCCce
Confidence 4999999999987765332 23345566677777653 234568888875 35778878886 59999
Q ss_pred EEecCCCCHHHHHHHHH
Q 009974 237 HIVVPNPDVRGRQEILE 253 (521)
Q Consensus 237 ~i~~~~P~~~~r~~il~ 253 (521)
++++...+.++-..||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999998887764
No 216
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.97 E-value=2.1e-08 Score=96.06 Aligned_cols=181 Identities=19% Similarity=0.240 Sum_probs=122.4
Q ss_pred CCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC---C--------
Q 009974 69 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV---P-------- 137 (521)
Q Consensus 69 ~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~---~-------- 137 (521)
....+.+|+.+.+.++....|+.+... .+.| ++++|||+|+||-|.+.++-+++-. +
T Consensus 5 dkyrpksl~~l~~~~e~~~~Lksl~~~-----------~d~P-Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t 72 (351)
T KOG2035|consen 5 DKYRPKSLDELIYHEELANLLKSLSST-----------GDFP-HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRT 72 (351)
T ss_pred hhcCcchhhhcccHHHHHHHHHHhccc-----------CCCC-eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEE
Confidence 344556888899999888877766541 2234 7999999999999999999887621 1
Q ss_pred ------------------EEEEeCchhhhhhhhhh-hHHHHHHHHHHHhcC---------CcEEEEccccccccCCcCCC
Q 009974 138 ------------------FFYRAGSEFEEMFVGVG-ARRVRSLFQAAKKKA---------PCIIFIDEIDAVGSTRKQWE 189 (521)
Q Consensus 138 ------------------~~~i~~~~~~~~~~g~~-~~~i~~~f~~a~~~~---------p~Il~IDEiD~l~~~~~~~~ 189 (521)
.+.++.++. |.. .--+++++....+.+ -.+++|.|+|.|.
T Consensus 73 ~~tpS~kklEistvsS~yHlEitPSDa-----G~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT------- 140 (351)
T KOG2035|consen 73 FTTPSKKKLEISTVSSNYHLEITPSDA-----GNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT------- 140 (351)
T ss_pred EecCCCceEEEEEecccceEEeChhhc-----CcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh-------
Confidence 112222221 111 122344444443322 2599999999993
Q ss_pred cccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCccc-HH
Q 009974 190 GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVD-VK 268 (521)
Q Consensus 190 ~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~-l~ 268 (521)
......|-..|+.+..+ +.+|..+|..+.+-+++++ |. ..+.+|.|+.++...++...+++.++.-..+ +.
T Consensus 141 ---~dAQ~aLRRTMEkYs~~--~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~ 212 (351)
T KOG2035|consen 141 ---RDAQHALRRTMEKYSSN--CRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLK 212 (351)
T ss_pred ---HHHHHHHHHHHHHHhcC--ceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHH
Confidence 34555677778865544 4566678888888888887 65 5789999999999999999998877664433 56
Q ss_pred HHHhcCCCCCHHHHHHH
Q 009974 269 AIARGTPGFNGADLANL 285 (521)
Q Consensus 269 ~la~~~~g~s~~dl~~l 285 (521)
.+++.+. ++++..
T Consensus 213 rIa~kS~----~nLRrA 225 (351)
T KOG2035|consen 213 RIAEKSN----RNLRRA 225 (351)
T ss_pred HHHHHhc----ccHHHH
Confidence 6666544 455543
No 217
>PRK12377 putative replication protein; Provisional
Probab=98.97 E-value=6.7e-09 Score=101.13 Aligned_cols=100 Identities=22% Similarity=0.243 Sum_probs=61.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhhhhhh--HHHHHHHHHHHhcCCcEEEEccccccccCC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGA--RRVRSLFQAAKKKAPCIIFIDEIDAVGSTR 185 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~g~~~--~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~ 185 (521)
.+++|+||||||||+||.++++++ +.++++++..++......... .....++... ....+|+|||++.....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s- 178 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRET- 178 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCC-
Confidence 489999999999999999999977 677888888887664322111 1112333333 34569999999765221
Q ss_pred cCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCC
Q 009974 186 KQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 221 (521)
Q Consensus 186 ~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~ 221 (521)
......+..++ +.-. .....+|.|||..
T Consensus 179 ----~~~~~~l~~ii---~~R~-~~~~ptiitSNl~ 206 (248)
T PRK12377 179 ----KNEQVVLNQII---DRRT-ASMRSVGMLTNLN 206 (248)
T ss_pred ----HHHHHHHHHHH---HHHH-hcCCCEEEEcCCC
Confidence 12233444444 3221 1223445678865
No 218
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.96 E-value=3e-08 Score=95.77 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=68.7
Q ss_pred CCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCccc-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 009974 221 PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVD-VKAIARGTPGFNGADLANLVNIAAIKAAVDGGE 299 (521)
Q Consensus 221 ~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~-l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~ 299 (521)
|..+|-.++. |. ..|...+++.++.++||+..+......-+.+ +..+......-|-+---+++..|...+.++...
T Consensus 339 phGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~ 415 (454)
T KOG2680|consen 339 PHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK 415 (454)
T ss_pred CCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 4567777766 55 4778888999999999999997765543333 444555444456777788999999999999999
Q ss_pred ccCHHHHHHHHHHHh
Q 009974 300 KLTATELEFAKDRIL 314 (521)
Q Consensus 300 ~it~~~~~~a~~~~~ 314 (521)
.+..+|+..+..-.+
T Consensus 416 ~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 416 VVEVDDIERVYRLFL 430 (454)
T ss_pred eeehhHHHHHHHHHh
Confidence 999999999987554
No 219
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=1.6e-08 Score=101.91 Aligned_cols=131 Identities=18% Similarity=0.273 Sum_probs=94.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-----------------------EEEEeCchhhhhhhhhhhHHHHHHH
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-----------------------FFYRAGSEFEEMFVGVGARRVRSLF 162 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~~~~-----------------------~~~i~~~~~~~~~~g~~~~~i~~~f 162 (521)
..+.|.++||+||.|+||+++|+++|+.+-+. |+.+.... .+. ..+...++.+-
T Consensus 21 ~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~--~I~vdqiR~l~ 97 (319)
T PRK06090 21 AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGK--SITVEQIRQCN 97 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCC--cCCHHHHHHHH
Confidence 35678899999999999999999999866321 22222110 000 01234556554
Q ss_pred HHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEE
Q 009974 163 QAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHI 238 (521)
Q Consensus 163 ~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i 238 (521)
+.+.. +...|++||++|.+ .....|.||+.++. +..++++|..|+.++.|-|.+++ |. ..+
T Consensus 98 ~~~~~~~~~~~~kV~iI~~ae~m----------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RC-q~~ 162 (319)
T PRK06090 98 RLAQESSQLNGYRLFVIEPADAM----------NESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RC-QQW 162 (319)
T ss_pred HHHhhCcccCCceEEEecchhhh----------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cc-eeE
Confidence 44432 33469999999999 45688899999995 56678888899999999999988 88 488
Q ss_pred ecCCCCHHHHHHHHHH
Q 009974 239 VVPNPDVRGRQEILEL 254 (521)
Q Consensus 239 ~~~~P~~~~r~~il~~ 254 (521)
.|++|+.++..+.+..
T Consensus 163 ~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 163 VVTPPSTAQAMQWLKG 178 (319)
T ss_pred eCCCCCHHHHHHHHHH
Confidence 9999999888777654
No 220
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=4.2e-09 Score=106.28 Aligned_cols=95 Identities=28% Similarity=0.456 Sum_probs=71.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh-hhhhhhhh-HHHHHHHHHHHh----cCCcEEEEccccccccC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE-EMFVGVGA-RRVRSLFQAAKK----KAPCIIFIDEIDAVGST 184 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~-~~~~g~~~-~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~ 184 (521)
.+|||.||+|+|||+||+.||+-+++||...+|..+. ..|+|+.. ..+.+++..|.. .+..||||||+|.+..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 3699999999999999999999999999999998874 56888754 445666665532 23459999999999855
Q ss_pred CcCCC----cccHHHHHHHHHhhhc
Q 009974 185 RKQWE----GHTKKTLHQLLVEMDG 205 (521)
Q Consensus 185 ~~~~~----~~~~~~l~~ll~~l~~ 205 (521)
....+ -..+-+...||..++|
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred CccccccccccchhHHHHHHHHhcc
Confidence 43322 1235677778888775
No 221
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.93 E-value=3.2e-10 Score=97.46 Aligned_cols=111 Identities=29% Similarity=0.347 Sum_probs=58.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCc-hhh-hhhhhhhhHHH-HHHHHHHHh-cCCcEEEEccccccccCCcC
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS-EFE-EMFVGVGARRV-RSLFQAAKK-KAPCIIFIDEIDAVGSTRKQ 187 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~-~~~-~~~~g~~~~~i-~~~f~~a~~-~~p~Il~IDEiD~l~~~~~~ 187 (521)
++||+|+||+|||++|+++|+.++..|..+.+. ++. +...|...-.. ...|...+. --..|+++|||+..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra------ 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA------ 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC------
Confidence 489999999999999999999999999988774 332 22222110000 000000000 00249999999887
Q ss_pred CCcccHHHHHHHHHhhhcC---------ccCCceEEEeecCCCC-----CCCccccCCCcc
Q 009974 188 WEGHTKKTLHQLLVEMDGF---------EQNEGIILMAATNLPD-----ILDPALTRPGRF 234 (521)
Q Consensus 188 ~~~~~~~~l~~ll~~l~~~---------~~~~~vivI~ttn~~~-----~ld~al~r~gRf 234 (521)
..++.+.+|+.|... .-...++||||-|..+ .|+++++. ||
T Consensus 75 ----ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 ----PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp -----HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ----CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 345666777776532 2245689999999765 57777776 76
No 222
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.92 E-value=9.6e-09 Score=110.05 Aligned_cols=206 Identities=21% Similarity=0.256 Sum_probs=120.9
Q ss_pred cccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhhh
Q 009974 76 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVG 152 (521)
Q Consensus 76 f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~g 152 (521)
+.+++|..+..+++.+.+..+... +.++++.|++||||+++|+++.... +.||+.++|..+......
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~----------~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRS----------DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCc----------CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 446788887777776666543322 2369999999999999999998764 579999999877443211
Q ss_pred h-----hh-------HHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc---------cCCc
Q 009974 153 V-----GA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEG 211 (521)
Q Consensus 153 ~-----~~-------~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~---------~~~~ 211 (521)
. .. ......|.. ..+.+|||||+|.+.. .....|+..++.-. ...+
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~ei~~l~~----------~~q~~ll~~l~~~~~~~~~~~~~~~~~ 269 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQ---ADGGTLFLDEIGDMPL----------DAQTRLLRVLADGEFYRVGGRTPIKVD 269 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEE---CCCCeEEEEchhhCCH----------HHHHHHHHHHhcCcEEECCCCceeeee
Confidence 0 00 000011111 2246899999999932 33445554444211 1235
Q ss_pred eEEEeecCCCC-------CCCccccCCCccceEEecCCCCHHH----HHHHHHHHhccC----C----CCCcccHHHHHh
Q 009974 212 IILMAATNLPD-------ILDPALTRPGRFDRHIVVPNPDVRG----RQEILELYLQDK----P----LADDVDVKAIAR 272 (521)
Q Consensus 212 vivI~ttn~~~-------~ld~al~r~gRf~~~i~~~~P~~~~----r~~il~~~l~~~----~----~~~~~~l~~la~ 272 (521)
+.+|++|+..- .+.+.|.. |+. .+.+..|...+ ...++++++... + .-++..+..|..
T Consensus 270 ~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 346 (463)
T TIGR01818 270 VRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQ 346 (463)
T ss_pred eEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHh
Confidence 67888887542 12222222 332 33445555444 444666665332 1 112333566666
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009974 273 GTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 273 ~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
...--+.++|+++++++...+ ....|+.+++...+
T Consensus 347 ~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 347 LRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred CCCCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 655457789999998877654 45678888876444
No 223
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.91 E-value=4.5e-09 Score=114.88 Aligned_cols=100 Identities=28% Similarity=0.369 Sum_probs=63.7
Q ss_pred ceEEEeecCCC--CCCCccccCCCccc---eEEecCC--C-CHHHHHHHHHHHhccCC---CCCccc---HHHHHh---c
Q 009974 211 GIILMAATNLP--DILDPALTRPGRFD---RHIVVPN--P-DVRGRQEILELYLQDKP---LADDVD---VKAIAR---G 273 (521)
Q Consensus 211 ~vivI~ttn~~--~~ld~al~r~gRf~---~~i~~~~--P-~~~~r~~il~~~l~~~~---~~~~~~---l~~la~---~ 273 (521)
++.+|+++|+. ..+|++|.. ||. ..+.|+. + +.+.+..+++.+.+... ....++ +..+.+ +
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 57888888875 467888887 885 4555552 2 34455556554443211 111222 222221 1
Q ss_pred CCC------CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 009974 274 TPG------FNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDR 312 (521)
Q Consensus 274 ~~g------~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~ 312 (521)
..| ...++|.++++.|...|...+.+.++.+|+.+|..+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 111 347899999999999999999999999999888754
No 224
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.90 E-value=1.2e-08 Score=100.81 Aligned_cols=212 Identities=22% Similarity=0.288 Sum_probs=130.5
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchh
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 146 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~ 146 (521)
.+....|+.+++.+...+.+.+-...+..-+ ..+||.|..||||-++|++..... ..||+.+||..+
T Consensus 197 ~~~~~~F~~~v~~S~~mk~~v~qA~k~AmlD----------APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~l 266 (511)
T COG3283 197 AQDVSGFEQIVAVSPKMKHVVEQAQKLAMLD----------APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASL 266 (511)
T ss_pred cccccchHHHhhccHHHHHHHHHHHHhhccC----------CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCC
Confidence 3345679999998887666665554433222 259999999999999999986644 689999999887
Q ss_pred hhhh-----hhhh--hHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhc-C--------ccCC
Q 009974 147 EEMF-----VGVG--ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG-F--------EQNE 210 (521)
Q Consensus 147 ~~~~-----~g~~--~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~-~--------~~~~ 210 (521)
.+.. .|.. .+-...+|+.|..+ .+|+|||..+. ......||..+.. . .-.-
T Consensus 267 Pe~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmS----------p~lQaKLLRFL~DGtFRRVGee~Ev~v 333 (511)
T COG3283 267 PEDAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMS----------PRLQAKLLRFLNDGTFRRVGEDHEVHV 333 (511)
T ss_pred chhHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcC----------HHHHHHHHHHhcCCceeecCCcceEEE
Confidence 5532 1221 23345688888766 89999999883 2334445554432 1 1123
Q ss_pred ceEEEeecCCCCC--CCccccCCCccce--EEecCCCCHHHHHH----HHHHHh----ccCCCC----CcccHHHHHhcC
Q 009974 211 GIILMAATNLPDI--LDPALTRPGRFDR--HIVVPNPDVRGRQE----ILELYL----QDKPLA----DDVDVKAIARGT 274 (521)
Q Consensus 211 ~vivI~ttn~~~~--ld~al~r~gRf~~--~i~~~~P~~~~r~~----il~~~l----~~~~~~----~~~~l~~la~~~ 274 (521)
.|.||+||..+-. ....-.|..-|.+ ++.+..|...+|.. +.+.|+ .+.+.. +..-+..+.++-
T Consensus 334 dVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~ 413 (511)
T COG3283 334 DVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYA 413 (511)
T ss_pred EEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcC
Confidence 5899999986531 2222222112222 66777788777754 334443 332221 122245566655
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 009974 275 PGFNGADLANLVNIAAIKAAVDGGEKLTATELE 307 (521)
Q Consensus 275 ~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~ 307 (521)
.--+.+++.|++-+|.... .+..++++++.
T Consensus 414 WpGNVRqL~N~iyRA~s~~---Eg~~l~i~~i~ 443 (511)
T COG3283 414 WPGNVRQLKNAIYRALTLL---EGYELRIEDIL 443 (511)
T ss_pred CCccHHHHHHHHHHHHHHh---ccCccchhhcc
Confidence 5457788888888776543 45667777664
No 225
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.88 E-value=1.9e-08 Score=97.73 Aligned_cols=100 Identities=21% Similarity=0.229 Sum_probs=64.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhhhhh---hHHHHHHHHHHHhcCCcEEEEccccccccC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVG---ARRVRSLFQAAKKKAPCIIFIDEIDAVGST 184 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~g~~---~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~ 184 (521)
.+++|+||||||||+|+.++|+++ +.++++++..++........ ......++.... ...+|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 489999999999999999999987 77888998888876543321 112223444433 457999999987631
Q ss_pred CcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCC
Q 009974 185 RKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 221 (521)
Q Consensus 185 ~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~ 221 (521)
.......+.+++..-- .....+|.|||..
T Consensus 177 ----s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~ 205 (244)
T PRK07952 177 ----SRYEKVIINQIVDRRS----SSKRPTGMLTNSN 205 (244)
T ss_pred ----CHHHHHHHHHHHHHHH----hCCCCEEEeCCCC
Confidence 1122344555554311 2223556678864
No 226
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.87 E-value=4.5e-09 Score=93.48 Aligned_cols=106 Identities=28% Similarity=0.440 Sum_probs=70.3
Q ss_pred cCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEEeCchhhhhhhhhhhH
Q 009974 80 KGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAGSEFEEMFVGVGAR 156 (521)
Q Consensus 80 ~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~---~~~~~i~~~~~~~~~~g~~~~ 156 (521)
+|.....+++++.+..+.... .+|+|+|+|||||+++|+++....+ .+|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~----------~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSS----------SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSS----------S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhCCC----------CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 477777888888777665432 3699999999999999999998765 467777766543
Q ss_pred HHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCC
Q 009974 157 RVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 220 (521)
Q Consensus 157 ~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~ 220 (521)
.++++.+ .+.+|||+|+|.+. ......|+..++... +.++.+|+++..
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~----------~~~Q~~L~~~l~~~~-~~~~RlI~ss~~ 109 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLS----------PEAQRRLLDLLKRQE-RSNVRLIASSSQ 109 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-----------HHHHHHHHHHHHHCT-TTTSEEEEEECC
T ss_pred --HHHHHHc---CCCEEEECChHHCC----------HHHHHHHHHHHHhcC-CCCeEEEEEeCC
Confidence 3345554 44599999999992 344455555555432 445566666654
No 227
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.85 E-value=9.1e-09 Score=109.49 Aligned_cols=203 Identities=24% Similarity=0.296 Sum_probs=119.0
Q ss_pred cccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhhhh-
Q 009974 78 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGV- 153 (521)
Q Consensus 78 di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~g~- 153 (521)
.++|.....+.+...+..+.. ....++++|++||||+++|+++.... +.||+.++|..+.......
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~----------~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAP----------SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhccC----------CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 356666655555444433321 23479999999999999999997654 5799999998765432211
Q ss_pred ----hh-------HHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc---------cCCceE
Q 009974 154 ----GA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGII 213 (521)
Q Consensus 154 ----~~-------~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~---------~~~~vi 213 (521)
.. ......|.. ..+++|||||||.|.. .....|+..++.-. ...++.
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ldei~~l~~----------~~q~~l~~~l~~~~~~~~~~~~~~~~~~r 276 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDISP----------MMQVRLLRAIQEREVQRVGSNQTISVDVR 276 (441)
T ss_pred hcCCCCCCcCCCCcCCCCceeE---CCCCEEEEeccccCCH----------HHHHHHHHHHccCcEEeCCCCceeeeceE
Confidence 00 000011222 2356999999999932 33445555554211 112467
Q ss_pred EEeecCCCCCCCccccCCCccce-------EEecCCCCHHHHHH----HHHHHhccC----CC----CCcccHHHHHhcC
Q 009974 214 LMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----PL----ADDVDVKAIARGT 274 (521)
Q Consensus 214 vI~ttn~~~~ld~al~r~gRf~~-------~i~~~~P~~~~r~~----il~~~l~~~----~~----~~~~~l~~la~~~ 274 (521)
+|++|+.+-. ....+|+|.. .+.+..|...+|.+ ++++++... .. -.+..+..+....
T Consensus 277 ii~~t~~~~~---~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 353 (441)
T PRK10365 277 LIAATHRDLA---AEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYD 353 (441)
T ss_pred EEEeCCCCHH---HHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCC
Confidence 8888775421 2223345533 56677777777654 555665431 11 1233456666666
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 009974 275 PGFNGADLANLVNIAAIKAAVDGGEKLTATELEFA 309 (521)
Q Consensus 275 ~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a 309 (521)
..-+.++++++++++... .....|+.+++...
T Consensus 354 wpgN~reL~~~~~~~~~~---~~~~~i~~~~l~~~ 385 (441)
T PRK10365 354 WPGNIRELENAVERAVVL---LTGEYISERELPLA 385 (441)
T ss_pred CCCHHHHHHHHHHHHHHh---CCCCccchHhCchh
Confidence 445778888888877654 35567888877543
No 228
>PRK08181 transposase; Validated
Probab=98.84 E-value=3.9e-08 Score=96.99 Aligned_cols=70 Identities=21% Similarity=0.329 Sum_probs=50.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhhhhh-hHHHHHHHHHHHhcCCcEEEEccccccc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVG-ARRVRSLFQAAKKKAPCIIFIDEIDAVG 182 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~g~~-~~~i~~~f~~a~~~~p~Il~IDEiD~l~ 182 (521)
.+++|+||||||||+|+.+++.++ |..+++++..++...+.... .......+.... .+.+|+|||++.+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~ 180 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVT 180 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEecccccc
Confidence 489999999999999999999754 77888988888776543211 122233444333 45699999998874
No 229
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.82 E-value=3.7e-08 Score=106.96 Aligned_cols=189 Identities=16% Similarity=0.166 Sum_probs=129.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEEeCchhhhhhhhhh--hHHH--------HHHHHHHHhcCCcEEEEccc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSEFEEMFVGVG--ARRV--------RSLFQAAKKKAPCIIFIDEI 178 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~--~~~~~i~~~~~~~~~~g~~--~~~i--------~~~f~~a~~~~p~Il~IDEi 178 (521)
.||+|.|++|||||+++++++.-+. .||+.+..+.-....+|.. +..+ ..++..|.. .||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 4899999999999999999999874 4888776555444444432 1111 123333333 49999999
Q ss_pred cccccCCcCCCcccHHHHHHHHHhhhcC-----------ccCCceEEEeecCCC---CCCCccccCCCccceEEecCCCC
Q 009974 179 DAVGSTRKQWEGHTKKTLHQLLVEMDGF-----------EQNEGIILMAATNLP---DILDPALTRPGRFDRHIVVPNPD 244 (521)
Q Consensus 179 D~l~~~~~~~~~~~~~~l~~ll~~l~~~-----------~~~~~vivI~ttn~~---~~ld~al~r~gRf~~~i~~~~P~ 244 (521)
..+ ...++..|++.|+.- ....++++|++.|.. ..|+++++. ||+.++.++.|+
T Consensus 103 n~~----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~~ 170 (584)
T PRK13406 103 ERL----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGLA 170 (584)
T ss_pred ccC----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCCC
Confidence 888 467888888887631 123568888874432 358888998 999999999887
Q ss_pred HHHHH-------HHH--HHHhccCCCCCcccHHHHHhc--CCCC-CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 009974 245 VRGRQ-------EIL--ELYLQDKPLADDVDVKAIARG--TPGF-NGADLANLVNIAAIKAAVDGGEKLTATELEFAKDR 312 (521)
Q Consensus 245 ~~~r~-------~il--~~~l~~~~~~~~~~l~~la~~--~~g~-s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~ 312 (521)
..+.. +|. +..+.+..+ ++..+..++.. ..|. |.+--..+++-|...|..++++.|+.+|+.+|..-
T Consensus 171 ~~~~~~~~~~~~~I~~AR~rl~~v~v-~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~l 249 (584)
T PRK13406 171 LRDAREIPIDADDIAAARARLPAVGP-PPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARL 249 (584)
T ss_pred hHHhcccCCCHHHHHHHHHHHccCCC-CHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 65422 232 222222222 23333443332 2355 77888889999999999999999999999999987
Q ss_pred Hhc
Q 009974 313 ILM 315 (521)
Q Consensus 313 ~~~ 315 (521)
++.
T Consensus 250 vL~ 252 (584)
T PRK13406 250 VLA 252 (584)
T ss_pred HHH
Confidence 763
No 230
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.82 E-value=6.2e-08 Score=103.81 Aligned_cols=209 Identities=16% Similarity=0.203 Sum_probs=119.7
Q ss_pred ccccCCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe-C
Q 009974 65 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA-G 143 (521)
Q Consensus 65 ~~~~~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~-~ 143 (521)
..+.....+.+.+||+-+.+-.++++.++..... +....+-+||+||||||||++++.+|++++..+..-. .
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~-------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np 79 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS-------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINP 79 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhc-------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCC
Confidence 4556677778999999998877777777764221 2223456889999999999999999999988776532 2
Q ss_pred chhh------hhhhhhh---------hHHHHHH-HHHHHh-----------cCCcEEEEccccccccCCcCCCcccHHHH
Q 009974 144 SEFE------EMFVGVG---------ARRVRSL-FQAAKK-----------KAPCIIFIDEIDAVGSTRKQWEGHTKKTL 196 (521)
Q Consensus 144 ~~~~------~~~~g~~---------~~~i~~~-f~~a~~-----------~~p~Il~IDEiD~l~~~~~~~~~~~~~~l 196 (521)
..+. ..+.+.. ......+ +..++. ..+.||+|||+-.+... .. ..+
T Consensus 80 ~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~------~~-~~f 152 (519)
T PF03215_consen 80 VSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR------DT-SRF 152 (519)
T ss_pred CCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch------hH-HHH
Confidence 2210 0111110 0111111 111111 23579999998765332 11 223
Q ss_pred HHHH-HhhhcCccCC-ceEEEee-cCC------CC--------CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccC
Q 009974 197 HQLL-VEMDGFEQNE-GIILMAA-TNL------PD--------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK 259 (521)
Q Consensus 197 ~~ll-~~l~~~~~~~-~vivI~t-tn~------~~--------~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~ 259 (521)
..+| ..+.. ... ++++|.+ ++. .. .+++.++...++ .+|.|.+-...-..+.|+..+...
T Consensus 153 ~~~L~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E 229 (519)
T PF03215_consen 153 REALRQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKE 229 (519)
T ss_pred HHHHHHHHHc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHH
Confidence 3333 22331 223 6666666 111 10 244555442233 478888877777766666666543
Q ss_pred --------CCCCccc-HHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 009974 260 --------PLADDVD-VKAIARGTPGFNGADLANLVNIAAIKAA 294 (521)
Q Consensus 260 --------~~~~~~~-l~~la~~~~g~s~~dl~~lv~~A~~~a~ 294 (521)
....... ++.|+.. |.+||+.+++.....+.
T Consensus 230 ~~~~~~~~~~p~~~~~l~~I~~~----s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 230 ARSSSGKNKVPDKQSVLDSIAES----SNGDIRSAINNLQFWCL 269 (519)
T ss_pred hhhhcCCccCCChHHHHHHHHHh----cCchHHHHHHHHHHHhc
Confidence 1112222 5666663 45799999997776665
No 231
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.81 E-value=1.4e-07 Score=96.49 Aligned_cols=202 Identities=22% Similarity=0.250 Sum_probs=127.4
Q ss_pred ccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC----C-CEEEEeCchhhhh--
Q 009974 77 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG----V-PFFYRAGSEFEEM-- 149 (521)
Q Consensus 77 ~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~----~-~~~~i~~~~~~~~-- 149 (521)
..+.|.+..+..+++++.... ....+.+++++|-||||||.+..-+-.... . ..++++|..+...
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hl--------e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHL--------ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHhhh--------hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 356888887777777766422 234456899999999999998886655432 2 3478888764221
Q ss_pred --------h----hhhh-hHHHHHHHHH-HHhcC-CcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEE
Q 009974 150 --------F----VGVG-ARRVRSLFQA-AKKKA-PCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIL 214 (521)
Q Consensus 150 --------~----~g~~-~~~i~~~f~~-a~~~~-p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~viv 214 (521)
+ .+.+ .......|.. ....+ +-++++||+|.|+... +.++..++.+-. ..+.++++
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-------~~vLy~lFewp~--lp~sr~iL 292 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-------QTVLYTLFEWPK--LPNSRIIL 292 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-------cceeeeehhccc--CCcceeee
Confidence 1 0111 1122233333 22233 6799999999997432 234444443222 34677899
Q ss_pred EeecCCCCCCCccccC----CCccceEEecCCCCHHHHHHHHHHHhccCCCCC--cccHHHHHhcCCCCCHHHHHH---H
Q 009974 215 MAATNLPDILDPALTR----PGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD--DVDVKAIARGTPGFNGADLAN---L 285 (521)
Q Consensus 215 I~ttn~~~~ld~al~r----~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~--~~~l~~la~~~~g~s~~dl~~---l 285 (521)
|+.+|..+.-|..|-| .+.-...+.|++++.++..+|+...+....... +..++..|++..|.|| |++. +
T Consensus 293 iGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRkaLdv 371 (529)
T KOG2227|consen 293 IGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKALDV 371 (529)
T ss_pred eeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHHHHH
Confidence 9999987654544322 122345899999999999999999998765443 3347778888887765 5554 4
Q ss_pred HHHHHHHHHHh
Q 009974 286 VNIAAIKAAVD 296 (521)
Q Consensus 286 v~~A~~~a~~~ 296 (521)
|+.|...+...
T Consensus 372 ~R~aiEI~E~e 382 (529)
T KOG2227|consen 372 CRRAIEIAEIE 382 (529)
T ss_pred HHHHHHHHHHH
Confidence 55555555433
No 232
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.78 E-value=6.9e-09 Score=110.02 Aligned_cols=180 Identities=26% Similarity=0.361 Sum_probs=111.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc--CCCEEEEeCchhhhhh-----hhhh--------hHHHHHHHHHHHhcCCcEEEEc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA--GVPFFYRAGSEFEEMF-----VGVG--------ARRVRSLFQAAKKKAPCIIFID 176 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~--~~~~~~i~~~~~~~~~-----~g~~--------~~~i~~~f~~a~~~~p~Il~ID 176 (521)
.+++.|.|||||..++|++.... ..||+.+||..+.+.. .|.. .+-.+..+..|..+ .+|+|
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gG---tlFld 414 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGG---TLFLD 414 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCC---ccHHH
Confidence 59999999999999999997654 5799999997765432 2221 12223334444333 89999
Q ss_pred cccccccCCcCCCcccHHHHHHHHHhhh--------cCccCCceEEEeecCCCCCCCccccCCCccce-------EEecC
Q 009974 177 EIDAVGSTRKQWEGHTKKTLHQLLVEMD--------GFEQNEGIILMAATNLPDILDPALTRPGRFDR-------HIVVP 241 (521)
Q Consensus 177 EiD~l~~~~~~~~~~~~~~l~~ll~~l~--------~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~-------~i~~~ 241 (521)
||..|. -.....||..+. +-...-.|.||+||+++-. .+.+.|||.. .+.+.
T Consensus 415 eIgd~p----------~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~---~lv~~g~fredLyyrL~~~~i~ 481 (606)
T COG3284 415 EIGDMP----------LALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLA---QLVEQGRFREDLYYRLNAFVIT 481 (606)
T ss_pred Hhhhch----------HHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHH---HHHHcCCchHHHHHHhcCeeec
Confidence 999882 233445555443 2223345889999997643 5667788865 55667
Q ss_pred CCCHHHHHH---HHHHHhccCCCC-Cccc---HHHHHh-cCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009974 242 NPDVRGRQE---ILELYLQDKPLA-DDVD---VKAIAR-GTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKD 311 (521)
Q Consensus 242 ~P~~~~r~~---il~~~l~~~~~~-~~~~---l~~la~-~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~ 311 (521)
+|...+|.+ .+.+++.+.... -..+ +..+.. ..+| +.+++.++++.++.. .+...|...|+...+.
T Consensus 482 lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l---~~~g~~~~~dlp~~l~ 555 (606)
T COG3284 482 LPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAAL---SDGGRIRVSDLPPELL 555 (606)
T ss_pred cCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHc---CCCCeeEcccCCHHHH
Confidence 788777764 444444433211 1222 333333 3444 678888888766544 4556666666655543
No 233
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.77 E-value=4.5e-08 Score=98.52 Aligned_cols=102 Identities=26% Similarity=0.380 Sum_probs=63.0
Q ss_pred cCCcccccCcHHHH-HHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhh
Q 009974 73 VKTFKDVKGCDDAK-QELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE 148 (521)
Q Consensus 73 ~~~f~di~G~~~~k-~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~ 148 (521)
..+|+++...+... ..+.....++.. |.. .+..+|++|+||+|||||+|+.|+|+++ |.++..++.+++..
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~---~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEA---YPP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHH---hhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 35788876544222 222222333321 111 1235699999999999999999999987 78888888887765
Q ss_pred hhhhhh-hHHHHHHHHHHHhcCCcEEEEcccccc
Q 009974 149 MFVGVG-ARRVRSLFQAAKKKAPCIIFIDEIDAV 181 (521)
Q Consensus 149 ~~~g~~-~~~i~~~f~~a~~~~p~Il~IDEiD~l 181 (521)
...... .......++... ...+|+|||+..-
T Consensus 198 ~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred HHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 533221 112233344433 3469999999765
No 234
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=4e-08 Score=99.78 Aligned_cols=133 Identities=18% Similarity=0.285 Sum_probs=92.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCC-------------------------EEEEeCchh---hhh-hhhhhhHH
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------------------------FFYRAGSEF---EEM-FVGVGARR 157 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~~~~-------------------------~~~i~~~~~---~~~-~~g~~~~~ 157 (521)
.+.|.++||+||+|+|||++|+.+|+.+.+. |+.++...- .+. ....+...
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~ 97 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDA 97 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHH
Confidence 3678899999999999999999999976431 233322110 000 00123456
Q ss_pred HHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCc
Q 009974 158 VRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGR 233 (521)
Q Consensus 158 i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gR 233 (521)
+|.+.+.+.. +...|++||+++.+ .....+.++..++... .++.+|.+|+.++.+.+.+.+ |
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~L----------d~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S--R 163 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESM----------NLQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS--R 163 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhC----------CHHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH--H
Confidence 7777666653 33459999999998 4566777888887643 346677788888899988887 7
Q ss_pred cceEEecCCCCHHHHHHHHHH
Q 009974 234 FDRHIVVPNPDVRGRQEILEL 254 (521)
Q Consensus 234 f~~~i~~~~P~~~~r~~il~~ 254 (521)
+ ..+.|++|+.++..+.+..
T Consensus 164 c-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 164 C-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred h-hhhcCCCCCHHHHHHHHHh
Confidence 6 5888999999888777754
No 235
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.74 E-value=7.8e-08 Score=92.52 Aligned_cols=183 Identities=25% Similarity=0.294 Sum_probs=94.7
Q ss_pred cCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC---CEEEEeC-chhh----hhh-
Q 009974 80 KGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV---PFFYRAG-SEFE----EMF- 150 (521)
Q Consensus 80 ~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~---~~~~i~~-~~~~----~~~- 150 (521)
+|.++..+.|.+++.. .....++|+||+|+|||++++.+.+.... ..++++. .... ...
T Consensus 2 ~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 5666655555554431 12347999999999999999999998832 2222221 1110 000
Q ss_pred ------------h-----------------hhhhHHHHHHHHHHHhc-CCcEEEEccccccc-cCCcCCCcccHHHHHHH
Q 009974 151 ------------V-----------------GVGARRVRSLFQAAKKK-APCIIFIDEIDAVG-STRKQWEGHTKKTLHQL 199 (521)
Q Consensus 151 ------------~-----------------g~~~~~i~~~f~~a~~~-~p~Il~IDEiD~l~-~~~~~~~~~~~~~l~~l 199 (521)
. ......+..++...... ...||+|||++.+. ... .....+..+
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~-----~~~~~~~~l 144 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE-----EDKDFLKSL 144 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT-----TTHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc-----chHHHHHHH
Confidence 0 11234455566665543 34899999999996 211 234555666
Q ss_pred HHhhhcCccCCceEEEeecCCCC------CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCC-C-CCcccHHHHH
Q 009974 200 LVEMDGFEQNEGIILMAATNLPD------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP-L-ADDVDVKAIA 271 (521)
Q Consensus 200 l~~l~~~~~~~~vivI~ttn~~~------~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~-~-~~~~~l~~la 271 (521)
...++......++.+|.++.... .-...+. +|+.. +.+++.+.++..++++..+.... + .++.+++.+.
T Consensus 145 ~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~ 221 (234)
T PF01637_consen 145 RSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIY 221 (234)
T ss_dssp HHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHH
T ss_pred HHHHhhccccCCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 66666533344444433333211 1122233 37766 99999999999999999876651 1 2455677777
Q ss_pred hcCCCCCHHHHH
Q 009974 272 RGTPGFNGADLA 283 (521)
Q Consensus 272 ~~~~g~s~~dl~ 283 (521)
..+.| .|+-|.
T Consensus 222 ~~~gG-~P~~l~ 232 (234)
T PF01637_consen 222 SLTGG-NPRYLQ 232 (234)
T ss_dssp HHHTT--HHHHH
T ss_pred HHhCC-CHHHHh
Confidence 77766 455443
No 236
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.74 E-value=4.1e-08 Score=99.62 Aligned_cols=100 Identities=23% Similarity=0.385 Sum_probs=61.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhhhhh---hHHHHHHHHHHHhcCCcEEEEccccccccC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVG---ARRVRSLFQAAKKKAPCIIFIDEIDAVGST 184 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~g~~---~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~ 184 (521)
.+++|+||||||||+|+.|+|+++ +..+++++..++........ .......+.... ...+|+|||+.....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~~- 260 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEKI- 260 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCCC-
Confidence 589999999999999999999986 77899999888766543210 011111233332 346999999977632
Q ss_pred CcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCC
Q 009974 185 RKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 221 (521)
Q Consensus 185 ~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~ 221 (521)
.......|+..++....+.. .+|.|||.+
T Consensus 261 -------t~~~~~~Lf~iin~R~~~~k-~tIiTSNl~ 289 (329)
T PRK06835 261 -------TEFSKSELFNLINKRLLRQK-KMIISTNLS 289 (329)
T ss_pred -------CHHHHHHHHHHHHHHHHCCC-CEEEECCCC
Confidence 12233444444443322222 345567753
No 237
>PF13173 AAA_14: AAA domain
Probab=98.73 E-value=9.6e-08 Score=83.74 Aligned_cols=118 Identities=25% Similarity=0.274 Sum_probs=70.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW 188 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~--~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~ 188 (521)
+.++|+||+|||||++++.+++... ..++++++.+.......... +.+.+.......+.+|||||++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~------ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP------ 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc------
Confidence 3689999999999999999999876 77888888776553211111 2233333222256799999999882
Q ss_pred CcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCC----CccccCCCccceEEecCCCCHHH
Q 009974 189 EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL----DPALTRPGRFDRHIVVPNPDVRG 247 (521)
Q Consensus 189 ~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~l----d~al~r~gRf~~~i~~~~P~~~~ 247 (521)
.....+..+.. . ..++-+|.|+.....+ ...+ +||.. .+.+.+.+..|
T Consensus 75 --~~~~~lk~l~d---~---~~~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 --DWEDALKFLVD---N---GPNIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFRE 126 (128)
T ss_pred --cHHHHHHHHHH---h---ccCceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHH
Confidence 12333333333 1 1223333333333222 2233 35764 67777777665
No 238
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.70 E-value=1.1e-07 Score=93.25 Aligned_cols=70 Identities=27% Similarity=0.452 Sum_probs=49.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhhhhhhH-HHH-HHHHHHHhcCCcEEEEcccccc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGAR-RVR-SLFQAAKKKAPCIIFIDEIDAV 181 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~g~~~~-~i~-~~f~~a~~~~p~Il~IDEiD~l 181 (521)
+.+++|+||||||||+||-|+++++ |.+++.++.+++.......... ... .+..... ...+|+|||+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~--~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK--KVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh--cCCEEEEecccCc
Confidence 4589999999999999999999876 7889999998887654322211 111 1222122 3359999999876
No 239
>PRK06526 transposase; Provisional
Probab=98.70 E-value=3.7e-08 Score=96.54 Aligned_cols=100 Identities=20% Similarity=0.337 Sum_probs=60.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhhhhh-hHHHHHHHHHHHhcCCcEEEEccccccccCC
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVG-ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTR 185 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~g~~-~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~ 185 (521)
+.+++|+||||||||++|.+++.++ |.+++++++.++........ .......+... ..+.+|+|||++.+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~~- 174 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPFE- 174 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCCC-
Confidence 4589999999999999999998865 67777777777665432211 11222223222 34579999999987321
Q ss_pred cCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCC
Q 009974 186 KQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 221 (521)
Q Consensus 186 ~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~ 221 (521)
......+.+++.... .+. .+|.|||.+
T Consensus 175 ----~~~~~~L~~li~~r~---~~~--s~IitSn~~ 201 (254)
T PRK06526 175 ----PEAANLFFQLVSSRY---ERA--SLIVTSNKP 201 (254)
T ss_pred ----HHHHHHHHHHHHHHH---hcC--CEEEEcCCC
Confidence 112233444443322 222 356678865
No 240
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.68 E-value=4.5e-07 Score=94.46 Aligned_cols=211 Identities=15% Similarity=0.163 Sum_probs=114.6
Q ss_pred ccccCCCCcCCcccccCcHHHHHHHHHHHHHhc--CchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009974 65 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLK--NPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 142 (521)
Q Consensus 65 ~~~~~~~~~~~f~di~G~~~~k~~L~~~v~~l~--~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~ 142 (521)
..++.+..+.+.++|.-+.+-..++++++..+. .+.. ..+-+||+||+||||||.++.+++++|..++.-+
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l-------~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKL-------GSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCC-------CceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 334445556678888776655555555554211 1111 1246889999999999999999999998877544
Q ss_pred Cc-h------------hhhhhhhhhhHHHHHHHHHHHh------------cCCcEEEEccccccccCCcCCCcccHHHHH
Q 009974 143 GS-E------------FEEMFVGVGARRVRSLFQAAKK------------KAPCIIFIDEIDAVGSTRKQWEGHTKKTLH 197 (521)
Q Consensus 143 ~~-~------------~~~~~~g~~~~~i~~~f~~a~~------------~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~ 197 (521)
.. . +........-.....+...+.. ..|.+|+|||+-...... ....+.
T Consensus 143 Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d------~~~~f~ 216 (634)
T KOG1970|consen 143 NPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD------DSETFR 216 (634)
T ss_pred CCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh------hHHHHH
Confidence 11 1 1111111111222223333311 246699999986653321 234444
Q ss_pred HHHHhhhcCccCCceEEEeecCCCCCCCccccCC------CccceEEecCCCCHHHHHHHHHHHhccCCC-------CCc
Q 009974 198 QLLVEMDGFEQNEGIILMAATNLPDILDPALTRP------GRFDRHIVVPNPDVRGRQEILELYLQDKPL-------ADD 264 (521)
Q Consensus 198 ~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~------gRf~~~i~~~~P~~~~r~~il~~~l~~~~~-------~~~ 264 (521)
.+|..+-.....+-|++|.-++.++..++..+.+ .|. .+|.|.+-...-.++.|+.++..... ...
T Consensus 217 evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~ 295 (634)
T KOG1970|consen 217 EVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDT 295 (634)
T ss_pred HHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchh
Confidence 5554443322222233333333334433332221 133 27788777777777777777754321 123
Q ss_pred ccHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 009974 265 VDVKAIARGTPGFNGADLANLVNIAAIKA 293 (521)
Q Consensus 265 ~~l~~la~~~~g~s~~dl~~lv~~A~~~a 293 (521)
..++.++. -+++||+.+++...+.+
T Consensus 296 ~~v~~i~~----~s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 296 AEVELICQ----GSGGDIRSAINSLQLSS 320 (634)
T ss_pred HHHHHHHH----hcCccHHHHHhHhhhhc
Confidence 33455555 35679999999777765
No 241
>PRK09183 transposase/IS protein; Provisional
Probab=98.64 E-value=1.2e-07 Score=93.40 Aligned_cols=71 Identities=30% Similarity=0.437 Sum_probs=49.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEEeCchhhhhhhhh-hhHHHHHHHHHHHhcCCcEEEEcccccc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAGSEFEEMFVGV-GARRVRSLFQAAKKKAPCIIFIDEIDAV 181 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~---~~~~~~~i~~~~~~~~~~g~-~~~~i~~~f~~a~~~~p~Il~IDEiD~l 181 (521)
..+++|+||||||||+++.+++.. .|..+.++++.++...+... ....+...+... ...+.+++|||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 357999999999999999999765 37788888877776443221 112233444443 245679999999876
No 242
>PRK06921 hypothetical protein; Provisional
Probab=98.64 E-value=2.7e-07 Score=91.18 Aligned_cols=68 Identities=31% Similarity=0.344 Sum_probs=46.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDA 180 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~----~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~ 180 (521)
..+++|+||||||||+|+.++|+++ +..+++++..++........ ......+... ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 4589999999999999999999975 57788888766654432211 1112222222 2346999999954
No 243
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.61 E-value=3.1e-07 Score=90.99 Aligned_cols=133 Identities=23% Similarity=0.375 Sum_probs=73.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC-C--EEEEeCchhhhhhhhhhhHHHHHHHHHH-----------HhcCCcEEEEc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGV-P--FFYRAGSEFEEMFVGVGARRVRSLFQAA-----------KKKAPCIIFID 176 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~-~--~~~i~~~~~~~~~~g~~~~~i~~~f~~a-----------~~~~p~Il~ID 176 (521)
+++||+||+|||||++++.+-+.+.- . ...++++.... ...++.+.+.. ..++.+|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH------HHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 37999999999999999988776543 2 22344433221 12222222111 11234699999
Q ss_pred cccccccCCcCCCcccHHHHHHHHHhh-h--cCccC--------CceEEEeecCCCC---CCCccccCCCccceEEecCC
Q 009974 177 EIDAVGSTRKQWEGHTKKTLHQLLVEM-D--GFEQN--------EGIILMAATNLPD---ILDPALTRPGRFDRHIVVPN 242 (521)
Q Consensus 177 EiD~l~~~~~~~~~~~~~~l~~ll~~l-~--~~~~~--------~~vivI~ttn~~~---~ld~al~r~gRf~~~i~~~~ 242 (521)
|++.-.... ...+...++|+++ + |+.+. .++.+|||+|.+. .+++.++| .| ..+.++.
T Consensus 108 DlN~p~~d~-----ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~ 179 (272)
T PF12775_consen 108 DLNMPQPDK-----YGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPY 179 (272)
T ss_dssp TTT-S---T-----TS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE---
T ss_pred ccCCCCCCC-----CCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEecC
Confidence 998654322 2222233444432 2 22221 2477889888643 36677776 56 5889999
Q ss_pred CCHHHHHHHHHHHhc
Q 009974 243 PDVRGRQEILELYLQ 257 (521)
Q Consensus 243 P~~~~r~~il~~~l~ 257 (521)
|+.+....|+..++.
T Consensus 180 p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 180 PSDESLNTIFSSILQ 194 (272)
T ss_dssp -TCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHh
Confidence 999999888777664
No 244
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=3.8e-07 Score=101.67 Aligned_cols=130 Identities=26% Similarity=0.336 Sum_probs=93.0
Q ss_pred ccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhh----
Q 009974 77 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM---- 149 (521)
Q Consensus 77 ~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~---- 149 (521)
+.|+|++++...+.+.+...+.... +. .++-.++|.||.|+|||-+|+++|..+ .-.++.++++++.+.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~--~~--~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLK--DP--NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccC--CC--CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 3589999999988888876543211 00 356789999999999999999999977 356899999876541
Q ss_pred -----hhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCcc---------CCceEEE
Q 009974 150 -----FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ---------NEGIILM 215 (521)
Q Consensus 150 -----~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~---------~~~vivI 215 (521)
|+|. .....+.+..+....+||+|||||.- ...+++.|++.+|...- -.++|||
T Consensus 638 gsp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkA----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~I 705 (898)
T KOG1051|consen 638 GSPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKA----------HPDVLNILLQLLDRGRLTDSHGREVDFKNAIFI 705 (898)
T ss_pred CCCcccccc--hhHHHHHHHHhcCCceEEEEechhhc----------CHHHHHHHHHHHhcCccccCCCcEeeccceEEE
Confidence 2222 23345566666666789999999976 45677777777764321 2458999
Q ss_pred eecCCCC
Q 009974 216 AATNLPD 222 (521)
Q Consensus 216 ~ttn~~~ 222 (521)
.|+|.-.
T Consensus 706 MTsn~~~ 712 (898)
T KOG1051|consen 706 MTSNVGS 712 (898)
T ss_pred Eecccch
Confidence 9988643
No 245
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.58 E-value=7.8e-08 Score=89.25 Aligned_cols=70 Identities=29% Similarity=0.441 Sum_probs=47.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhhhhh-hHHHHHHHHHHHhcCCcEEEEcccccc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVG-ARRVRSLFQAAKKKAPCIIFIDEIDAV 181 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~g~~-~~~i~~~f~~a~~~~p~Il~IDEiD~l 181 (521)
+.|++|+||||||||++|.++++++ |.++.+++.+++........ .......+.... ...+|+|||+...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 4689999999999999999999865 88899999988876543221 112233444433 3459999998654
No 246
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=1e-06 Score=87.28 Aligned_cols=123 Identities=19% Similarity=0.207 Sum_probs=83.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC--------chhhhhh-hh----hhhHHHHHHHHHHHh----c
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG--------SEFEEMF-VG----VGARRVRSLFQAAKK----K 168 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~--------~~~~~~~-~g----~~~~~i~~~f~~a~~----~ 168 (521)
..+.|...||+||+|+||+.+|.++|+.+-+.--.-+| +++.... .+ -+...++.+.+.+.. +
T Consensus 15 ~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~ 94 (290)
T PRK05917 15 DQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYES 94 (290)
T ss_pred cCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCC
Confidence 35678899999999999999999999977542100011 1110000 00 123445555555432 3
Q ss_pred CCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCC
Q 009974 169 APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNP 243 (521)
Q Consensus 169 ~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P 243 (521)
...|++||++|.+ .....|.||+.++. +..++++|..|+.++.+.|.+++ |+ ..+.|+++
T Consensus 95 ~~kv~ii~~ad~m----------t~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 95 PYKIYIIHEADRM----------TLDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred CceEEEEechhhc----------CHHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 3469999999999 45678899999995 56678888888889999999887 77 46666654
No 247
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.52 E-value=3.5e-07 Score=80.04 Aligned_cols=97 Identities=23% Similarity=0.343 Sum_probs=58.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc--------CCCEEEEeCchhhh--hhh------------h--hhhHHHHHHHHHHH
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA--------GVPFFYRAGSEFEE--MFV------------G--VGARRVRSLFQAAK 166 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~--------~~~~~~i~~~~~~~--~~~------------g--~~~~~i~~~f~~a~ 166 (521)
+.++++||||+|||++++.+++.. ..+++.+++..... .+. . ........+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 479999999999999999999987 67888887755431 000 0 01122233333444
Q ss_pred hcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeec
Q 009974 167 KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT 218 (521)
Q Consensus 167 ~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~tt 218 (521)
.....+|+|||+|.+. ....++.+...++ ..+-.++++++.
T Consensus 85 ~~~~~~lviDe~~~l~---------~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF---------SDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HCTEEEEEEETTHHHH---------THHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred hcCCeEEEEeChHhcC---------CHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 4444599999999984 1455666655555 333445555554
No 248
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.51 E-value=4.1e-08 Score=100.23 Aligned_cols=182 Identities=26% Similarity=0.278 Sum_probs=102.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchh--------------hhhhhhhhhHHHHHHHHHHHhcCCcEEEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF--------------EEMFVGVGARRVRSLFQAAKKKAPCIIFI 175 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~--------------~~~~~g~~~~~i~~~f~~a~~~~p~Il~I 175 (521)
.-++||.|.||||||.|.+.+++-....+ ++++... ...|.-+ ...+-.|.. .|++|
T Consensus 57 ~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~~d~~~~~~~le-----aGalvlad~---GiccI 127 (331)
T PF00493_consen 57 NIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVSRDPVTGEWVLE-----AGALVLADG---GICCI 127 (331)
T ss_dssp S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEECCCGGTSSECEE-----E-HHHHCTT---SEEEE
T ss_pred ccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceeccccccceeEEe-----CCchhcccC---ceeee
Confidence 34799999999999999998876543333 3332221 1111100 012333333 49999
Q ss_pred ccccccccCCcCCCcccHHHHHHHHHhhhcC-----------ccCCceEEEeecCCCC-------------CCCccccCC
Q 009974 176 DEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF-----------EQNEGIILMAATNLPD-------------ILDPALTRP 231 (521)
Q Consensus 176 DEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~-----------~~~~~vivI~ttn~~~-------------~ld~al~r~ 231 (521)
||+|.+-. .....|+..|+.- .-+.+.-|++++|... .+++.+++
T Consensus 128 De~dk~~~----------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS- 196 (331)
T PF00493_consen 128 DEFDKMKE----------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS- 196 (331)
T ss_dssp CTTTT--C----------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC-
T ss_pred cccccccc----------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh-
Confidence 99999832 2344566666531 1134577899999754 47788888
Q ss_pred CccceEEec-CCCCHHHHHHHHHHHhccCCCCC------------ccc------HHHHHh--------------------
Q 009974 232 GRFDRHIVV-PNPDVRGRQEILELYLQDKPLAD------------DVD------VKAIAR-------------------- 272 (521)
Q Consensus 232 gRf~~~i~~-~~P~~~~r~~il~~~l~~~~~~~------------~~~------l~~la~-------------------- 272 (521)
|||..+.+ +.|+.+.-..+.++.+....... ..+ +-..++
T Consensus 197 -RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv 275 (331)
T PF00493_consen 197 -RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYV 275 (331)
T ss_dssp -C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHC
T ss_pred -hcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHH
Confidence 99998765 56776666666665554321110 000 001111
Q ss_pred ----------cCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 009974 273 ----------GTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDR 312 (521)
Q Consensus 273 ----------~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~ 312 (521)
.....|.+.|+.+++-|...|..+-++.|+.+|+..|+.-
T Consensus 276 ~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L 325 (331)
T PF00493_consen 276 ELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRL 325 (331)
T ss_dssp CCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHH
T ss_pred HhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHH
Confidence 1123567788999999999999999999999999999864
No 249
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.49 E-value=5.2e-06 Score=79.33 Aligned_cols=184 Identities=22% Similarity=0.263 Sum_probs=114.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCC---CEEEEeCchh-----hhhhhhh------------hhHHHHHHHHHHHhc-CC
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGV---PFFYRAGSEF-----EEMFVGV------------GARRVRSLFQAAKKK-AP 170 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~---~~~~i~~~~~-----~~~~~g~------------~~~~i~~~f~~a~~~-~p 170 (521)
-+.++|+.|||||+++|++...++. ..++++...+ ...+..+ ..+.-+.+....+++ .|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 4779999999999999987776643 2344444332 2211111 112223344444443 46
Q ss_pred cEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCC------CccceEEecCCCC
Q 009974 171 CIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRP------GRFDRHIVVPNPD 244 (521)
Q Consensus 171 ~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~------gRf~~~i~~~~P~ 244 (521)
.++++||.+.+..+ .-..+.-|.+.-++....-+++.++-.. |.+.++++ -|++-.|.+++.+
T Consensus 133 v~l~vdEah~L~~~-------~le~Lrll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 133 VVLMVDEAHDLNDS-------ALEALRLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred eEEeehhHhhhChh-------HHHHHHHHHhhcccccCceeeeecCCcc----cchhhchHHHHhhhheEEEEEecCCcC
Confidence 89999999988321 2223333333223333334466665432 22222211 2777778899999
Q ss_pred HHHHHHHHHHHhccCC----CCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 009974 245 VRGRQEILELYLQDKP----LADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 307 (521)
Q Consensus 245 ~~~r~~il~~~l~~~~----~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~ 307 (521)
.++...++++.++... +.++..+..+...+.| .|+-|.+++..|...|...+++.|+...++
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 9999999999987643 3344457778888887 699999999999988888888888876553
No 250
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.45 E-value=7.5e-07 Score=94.08 Aligned_cols=221 Identities=19% Similarity=0.224 Sum_probs=125.1
Q ss_pred CcccccCcHHHHHHHHHHHHHhcCchhhhhcC--CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCc-----hhh
Q 009974 75 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLG--GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS-----EFE 147 (521)
Q Consensus 75 ~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g--~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~-----~~~ 147 (521)
-|-.|.|++.+|.-+.-.+ +---.++..-| .+-.-+|++.|.||||||-+.++.+.-+-..++. ++. .+.
T Consensus 343 l~PsIyGhe~VK~GilL~L--fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt-sGkaSSaAGLT 419 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSL--FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT-SGKASSAAGLT 419 (764)
T ss_pred hCccccchHHHHhhHHHHH--hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEe-cCcccccccce
Confidence 3667889998887664433 21112222111 2233579999999999999999999876554442 211 110
Q ss_pred hhhhh--hhhHHH--HHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcC-----------ccCCce
Q 009974 148 EMFVG--VGARRV--RSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF-----------EQNEGI 212 (521)
Q Consensus 148 ~~~~g--~~~~~i--~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~-----------~~~~~v 212 (521)
...+. ++.... ...+-.| ...|-.|||+|.+..+ -...+.+.|+.- .-+.+-
T Consensus 420 aaVvkD~esgdf~iEAGALmLA---DnGICCIDEFDKMd~~----------dqvAihEAMEQQtISIaKAGv~aTLnARt 486 (764)
T KOG0480|consen 420 AAVVKDEESGDFTIEAGALMLA---DNGICCIDEFDKMDVK----------DQVAIHEAMEQQTISIAKAGVVATLNART 486 (764)
T ss_pred EEEEecCCCCceeeecCcEEEc---cCceEEechhcccChH----------hHHHHHHHHHhheehheecceEEeecchh
Confidence 00000 000000 0001111 2348899999999432 122344444421 112334
Q ss_pred EEEeecCCCC-------------CCCccccCCCccceE-EecCCCCHHHHHHHHHHHhccCCCCC---------------
Q 009974 213 ILMAATNLPD-------------ILDPALTRPGRFDRH-IVVPNPDVRGRQEILELYLQDKPLAD--------------- 263 (521)
Q Consensus 213 ivI~ttn~~~-------------~ld~al~r~gRf~~~-i~~~~P~~~~r~~il~~~l~~~~~~~--------------- 263 (521)
-|+||+|... .+++++++ |||.. |-++.|++..=..|-++.+.....-+
T Consensus 487 SIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vr 564 (764)
T KOG0480|consen 487 SILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVR 564 (764)
T ss_pred hhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHH
Confidence 5788888652 46788888 99984 46677887766666665553321100
Q ss_pred --------------ccc-------HHHH--------HhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 009974 264 --------------DVD-------VKAI--------ARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 313 (521)
Q Consensus 264 --------------~~~-------l~~l--------a~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~ 313 (521)
... +..+ .+.+.+.|.++|+.+++-+-.+|..+-.+.+|.+|+.+|++-+
T Consensus 565 kYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLl 643 (764)
T KOG0480|consen 565 KYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELL 643 (764)
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHH
Confidence 000 0000 0112356788899998888888888888889998888887643
No 251
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.45 E-value=7.9e-07 Score=96.96 Aligned_cols=220 Identities=23% Similarity=0.270 Sum_probs=118.5
Q ss_pred cccccCcHHHHHHHHHHHHHhcCchhhhhcC--CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE-eCchhhhhhhh
Q 009974 76 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLG--GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR-AGSEFEEMFVG 152 (521)
Q Consensus 76 f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g--~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i-~~~~~~~~~~g 152 (521)
.-.|.|++.+|+.+.-.+ +--..+...-| .+-.-+|||.|.||||||.|.+.+++-+-..++.. .++.- .|
T Consensus 285 aPsIyG~e~VKkAilLqL--fgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~----~G 358 (682)
T COG1241 285 APSIYGHEDVKKAILLQL--FGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA----AG 358 (682)
T ss_pred cccccCcHHHHHHHHHHh--cCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc----cC
Confidence 345677777776654332 11111111111 12234799999999999999999998775544421 11110 01
Q ss_pred hhhHHHHHHH--H---HH---HhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcC-----------ccCCceE
Q 009974 153 VGARRVRSLF--Q---AA---KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF-----------EQNEGII 213 (521)
Q Consensus 153 ~~~~~i~~~f--~---~a---~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~-----------~~~~~vi 213 (521)
-++..+++-. + .+ ....+.|.+|||+|.+- ....+.+...|+.- .-+.+.-
T Consensus 359 LTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~----------~~dr~aihEaMEQQtIsIaKAGI~atLnARcs 428 (682)
T COG1241 359 LTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMN----------EEDRVAIHEAMEQQTISIAKAGITATLNARCS 428 (682)
T ss_pred ceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCC----------hHHHHHHHHHHHhcEeeecccceeeecchhhh
Confidence 1110011100 0 00 00124699999999982 22233444444421 1123456
Q ss_pred EEeecCCCC-------------CCCccccCCCccceEEecC-CCCHHHHHHHHHHHhccC--------------------
Q 009974 214 LMAATNLPD-------------ILDPALTRPGRFDRHIVVP-NPDVRGRQEILELYLQDK-------------------- 259 (521)
Q Consensus 214 vI~ttn~~~-------------~ld~al~r~gRf~~~i~~~-~P~~~~r~~il~~~l~~~-------------------- 259 (521)
|+||+|... +|++.|++ |||..+.+. .|+.+.=..+.++.+..+
T Consensus 429 vLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~ 506 (682)
T COG1241 429 VLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEER 506 (682)
T ss_pred hhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccC
Confidence 788888753 47888998 999876554 576653333333332211
Q ss_pred -----------------CCCCcccHHHHH-------h--------cCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 009974 260 -----------------PLADDVDVKAIA-------R--------GTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 307 (521)
Q Consensus 260 -----------------~~~~~~~l~~la-------~--------~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~ 307 (521)
+...+...+.+. + .+...|.++|+.+++-|...|..+-.+.++.+|+.
T Consensus 507 ~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~ 586 (682)
T COG1241 507 DFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVD 586 (682)
T ss_pred cHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 011111111111 0 11235678888888888888888888888888888
Q ss_pred HHHHHH
Q 009974 308 FAKDRI 313 (521)
Q Consensus 308 ~a~~~~ 313 (521)
+|++-+
T Consensus 587 eAi~lv 592 (682)
T COG1241 587 EAIRLV 592 (682)
T ss_pred HHHHHH
Confidence 887644
No 252
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=6e-06 Score=82.09 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=85.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEE----------------EEeCchhhhhh-hh--hhhHHHHHHHHHHHh
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF----------------YRAGSEFEEMF-VG--VGARRVRSLFQAAKK 167 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~----------------~i~~~~~~~~~-~g--~~~~~i~~~f~~a~~ 167 (521)
.+.|.++||+|| +||+++|+++|+.+-+.-- .-+.+++.... .| .....++++...+..
T Consensus 21 ~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~ 98 (290)
T PRK07276 21 DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQ 98 (290)
T ss_pred CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhh
Confidence 567789999996 6899999999986633110 00111111000 01 123556665555432
Q ss_pred ----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCC
Q 009974 168 ----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNP 243 (521)
Q Consensus 168 ----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P 243 (521)
+...|++||++|.+ .....|.||+.++. +..++++|.+|+.++.+-|.+++ |+ ..+.|+.
T Consensus 99 ~p~~~~~kV~II~~ad~m----------~~~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~- 162 (290)
T PRK07276 99 SGYEGKQQVFIIKDADKM----------HVNAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RT-QIFHFPK- 162 (290)
T ss_pred CcccCCcEEEEeehhhhc----------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cc-eeeeCCC-
Confidence 33469999999999 45678899999995 55567888888889999999988 87 5777765
Q ss_pred CHHHHHHHHH
Q 009974 244 DVRGRQEILE 253 (521)
Q Consensus 244 ~~~~r~~il~ 253 (521)
+.+...+++.
T Consensus 163 ~~~~~~~~L~ 172 (290)
T PRK07276 163 NEAYLIQLLE 172 (290)
T ss_pred cHHHHHHHHH
Confidence 5555445553
No 253
>PF05729 NACHT: NACHT domain
Probab=98.42 E-value=2.3e-06 Score=77.71 Aligned_cols=139 Identities=16% Similarity=0.315 Sum_probs=72.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC--------CC-EEEEeCchhhhh---------h---hhhhhHHHHHHH-HHHHhcC
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAG--------VP-FFYRAGSEFEEM---------F---VGVGARRVRSLF-QAAKKKA 169 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~--------~~-~~~i~~~~~~~~---------~---~g~~~~~i~~~f-~~a~~~~ 169 (521)
-++|+|+||+|||++++.++..+. .+ ++..++.+.... . ...........+ .......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 589999999999999999987551 12 223333332211 0 000111112211 2233455
Q ss_pred CcEEEEccccccccCCcCCCcccHHHHHHHH-HhhhcCccCCceEEEeecCCC--CCCCccccCCCccceEEecCCCCHH
Q 009974 170 PCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL-VEMDGFEQNEGIILMAATNLP--DILDPALTRPGRFDRHIVVPNPDVR 246 (521)
Q Consensus 170 p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll-~~l~~~~~~~~vivI~ttn~~--~~ld~al~r~gRf~~~i~~~~P~~~ 246 (521)
+.+++||.+|.+...... ........++ ..+.. ....++-++.|++.. ..+...+.. ...+.++..+.+
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~-~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~~~~ 153 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ-ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPFSEE 153 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhh-ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCCCHH
Confidence 679999999999653221 0111122222 22322 112233333333322 122222222 147888999999
Q ss_pred HHHHHHHHHhcc
Q 009974 247 GRQEILELYLQD 258 (521)
Q Consensus 247 ~r~~il~~~l~~ 258 (521)
++.++++.+++.
T Consensus 154 ~~~~~~~~~f~~ 165 (166)
T PF05729_consen 154 DIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHhhc
Confidence 999999998864
No 254
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.41 E-value=1.4e-07 Score=97.47 Aligned_cols=111 Identities=19% Similarity=0.272 Sum_probs=73.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCcccccccccCCCCcCCcccccCcHHHHHH
Q 009974 9 KSRFAQELISTILFTVAVGLVWLMGAAALQKYIGSLGGIGTSGVGSSSSYAPKELNKEVMPEKNVKTFKDVKGCDDAKQE 88 (521)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~di~G~~~~k~~ 88 (521)
-+.+++.++..+++.++..+.|+...+.++ .|.+..++.-.++...|- +.....|+.+.+.....++
T Consensus 245 ~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t-----~G~mIA~SIl~gRaLaPi--------d~aI~~Wkq~~~Ar~s~~R 311 (580)
T COG4618 245 FGALSRALRMALQSAVLGLGAWLVIKGEIT-----PGMMIAGSILSGRALAPI--------DLAIANWKQFVAARQSYKR 311 (580)
T ss_pred HHHHHHHHHHHHHHHHHhcceeeEEcCcCC-----cchhhHHHHHhhhhhccH--------HHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999999987654322 133444455555655542 2334578888999999999
Q ss_pred HHHHHHHhcCchh-----------------hhhcCCC------------CCceEEEEcCCCCcHHHHHHHHHH
Q 009974 89 LVEVVEYLKNPSK-----------------FTRLGGK------------LPKGILLTGAPGTGKTLLAKAIAG 132 (521)
Q Consensus 89 L~~~v~~l~~~~~-----------------~~~~g~~------------~p~~vLL~GppGtGKT~la~alA~ 132 (521)
|++++........ +...|.+ +..++=+.||+|+|||||+|.+-.
T Consensus 312 l~~lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 312 LNELLAELPAAAERMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred HHHHHHhCccccCCCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHc
Confidence 9998876432211 0001111 112367899999999999999955
No 255
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.41 E-value=7.4e-07 Score=80.55 Aligned_cols=107 Identities=23% Similarity=0.314 Sum_probs=61.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhh----------------------hh--hhHHHHHHHHHH
Q 009974 113 ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV----------------------GV--GARRVRSLFQAA 165 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~----------------------g~--~~~~i~~~f~~a 165 (521)
++|+||||+|||+++..++..+ +.++++++......... .. ...........+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 56777776643322110 00 011112234455
Q ss_pred HhcCCcEEEEccccccccCCc----CCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCC
Q 009974 166 KKKAPCIIFIDEIDAVGSTRK----QWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 223 (521)
Q Consensus 166 ~~~~p~Il~IDEiD~l~~~~~----~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ 223 (521)
....|.+++|||+..+..... .........+..+...+. +.++.+|.+++.+..
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~~ 139 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPSG 139 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCCc
Confidence 567788999999998854321 111112233333333332 345666666665543
No 256
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.39 E-value=2.2e-06 Score=88.17 Aligned_cols=140 Identities=23% Similarity=0.259 Sum_probs=79.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCC-CEEEEeCchhhhhhhhh------hhHHHHHHHHHHHhcCCcEEEEcccc
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEAGV-PFFYRAGSEFEEMFVGV------GARRVRSLFQAAKKKAPCIIFIDEID 179 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~~~-~~~~i~~~~~~~~~~g~------~~~~i~~~f~~a~~~~p~Il~IDEiD 179 (521)
...|+|++||||+|+|||+|.-.+...+.. .-..+....|....-.. ....+..+-+.... ...+|++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeee
Confidence 457899999999999999999999887754 11222222332211000 01112222222222 22499999997
Q ss_pred ccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCC-CCCCc-cccCCCccceEEecCCCCHHHHHHHHHHHhc
Q 009974 180 AVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP-DILDP-ALTRPGRFDRHIVVPNPDVRGRQEILELYLQ 257 (521)
Q Consensus 180 ~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~-~~ld~-al~r~gRf~~~i~~~~P~~~~r~~il~~~l~ 257 (521)
.- +-.....+..|+..+- ..++++|+|+|++ +.|-+ .+.| .+|- | -.++|+.++.
T Consensus 138 V~-------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly~~gl~r-~~Fl-----p------~I~~l~~~~~ 194 (362)
T PF03969_consen 138 VT-------DIADAMILKRLFEALF----KRGVVLVATSNRPPEDLYKNGLQR-ERFL-----P------FIDLLKRRCD 194 (362)
T ss_pred cc-------chhHHHHHHHHHHHHH----HCCCEEEecCCCChHHHcCCcccH-HHHH-----H------HHHHHHhceE
Confidence 54 1223455666776654 5788999999975 33322 2222 2331 1 2456777776
Q ss_pred cCCCCCcccHHHH
Q 009974 258 DKPLADDVDVKAI 270 (521)
Q Consensus 258 ~~~~~~~~~l~~l 270 (521)
-..+....|+...
T Consensus 195 vv~ld~~~DyR~~ 207 (362)
T PF03969_consen 195 VVELDGGVDYRRR 207 (362)
T ss_pred EEEecCCCchhhh
Confidence 6666666676553
No 257
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.37 E-value=5e-06 Score=80.27 Aligned_cols=125 Identities=22% Similarity=0.254 Sum_probs=72.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG 190 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~ 190 (521)
.+-.++||+|||||.+++.+|+.+|.+++..+|++-.+. +.+.++|.-+... .+.+++||++.+-.
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~------~~l~ril~G~~~~-GaW~cfdefnrl~~------- 98 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY------QSLSRILKGLAQS-GAWLCFDEFNRLSE------- 98 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H------HHHHHHHHHHHHH-T-EEEEETCCCSSH-------
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH------HHHHHHHHHHhhc-CchhhhhhhhhhhH-------
Confidence 367889999999999999999999999999999886553 4556666554443 36999999999821
Q ss_pred ccHHHHHHHHHh----hhc-----------CccCCceEEEeecCCC----CCCCccccCCCccceEEecCCCCHHHHHHH
Q 009974 191 HTKKTLHQLLVE----MDG-----------FEQNEGIILMAATNLP----DILDPALTRPGRFDRHIVVPNPDVRGRQEI 251 (521)
Q Consensus 191 ~~~~~l~~ll~~----l~~-----------~~~~~~vivI~ttn~~----~~ld~al~r~gRf~~~i~~~~P~~~~r~~i 251 (521)
..-.++.+.+.. +.. +.-+...-++.|.|.. ..||+.++. -| |.+.+..||.....++
T Consensus 99 ~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~I~ei 175 (231)
T PF12774_consen 99 EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSLIAEI 175 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHHHHHH
Confidence 122222222222 111 0112233444566632 468888876 44 7899999998766554
Q ss_pred H
Q 009974 252 L 252 (521)
Q Consensus 252 l 252 (521)
+
T Consensus 176 ~ 176 (231)
T PF12774_consen 176 L 176 (231)
T ss_dssp H
T ss_pred H
Confidence 4
No 258
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.33 E-value=4.6e-06 Score=88.97 Aligned_cols=133 Identities=27% Similarity=0.366 Sum_probs=72.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC--chhhh--hhhhhhhHHHHHHHHHHH---hcCCcEEEEcccccccc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG--SEFEE--MFVGVGARRVRSLFQAAK---KKAPCIIFIDEIDAVGS 183 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~--~~~~~--~~~g~~~~~i~~~f~~a~---~~~p~Il~IDEiD~l~~ 183 (521)
-+|||+|.||||||.+.+.+++-+..-.+. |+ +.-.. .|+... ...+++.-+.- .....|-.|||+|.|..
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~yT-SGkGsSavGLTayVtrd-~dtkqlVLesGALVLSD~GiCCIDEFDKM~d 540 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGVYT-SGKGSSAVGLTAYVTKD-PDTRQLVLESGALVLSDNGICCIDEFDKMSD 540 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCcceee-cCCccchhcceeeEEec-CccceeeeecCcEEEcCCceEEchhhhhhhH
Confidence 479999999999999999999876443332 21 10000 000000 00001110000 01234889999999922
Q ss_pred CCcCCCcccHHHHHHHHHhh------hcC--ccCCceEEEeecCCCC-------------CCCccccCCCccceEE-ecC
Q 009974 184 TRKQWEGHTKKTLHQLLVEM------DGF--EQNEGIILMAATNLPD-------------ILDPALTRPGRFDRHI-VVP 241 (521)
Q Consensus 184 ~~~~~~~~~~~~l~~ll~~l------~~~--~~~~~vivI~ttn~~~-------------~ld~al~r~gRf~~~i-~~~ 241 (521)
..+.++.+.+++= .|+ .-+.+.-|+|++|... .|+|.|++ |||.++ -++
T Consensus 541 -------StrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD 611 (804)
T KOG0478|consen 541 -------STRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLD 611 (804)
T ss_pred -------HHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEec
Confidence 2333443333220 111 1234556888998532 47899999 999865 556
Q ss_pred CCCHHHHHHHHHH
Q 009974 242 NPDVRGRQEILEL 254 (521)
Q Consensus 242 ~P~~~~r~~il~~ 254 (521)
.||...=+.|..|
T Consensus 612 ~~DE~~Dr~La~H 624 (804)
T KOG0478|consen 612 KPDERSDRRLADH 624 (804)
T ss_pred CcchhHHHHHHHH
Confidence 7777633344333
No 259
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=1e-05 Score=78.54 Aligned_cols=121 Identities=13% Similarity=0.076 Sum_probs=81.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC--------------chhhhhhh---hhhhHHHHHHHHHHH----
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG--------------SEFEEMFV---GVGARRVRSLFQAAK---- 166 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~--------------~~~~~~~~---g~~~~~i~~~f~~a~---- 166 (521)
.+|.++||+||+|+||..+|.++|+.+-+.--.-.| +|+.-.+. .-+...++++.+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 357799999999999999999999866321000001 11110000 112344444444332
Q ss_pred h-cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCC
Q 009974 167 K-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNP 243 (521)
Q Consensus 167 ~-~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P 243 (521)
. +...|++|+++|.+ .....|.||..++. +..++++|..|+.++.+.+.+++ |.. .+.++.+
T Consensus 85 e~~~~KV~II~~ae~m----------~~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL----------NKQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCV-QYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhh----------CHHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--hee-eeecCCh
Confidence 1 23469999999999 46788999999994 66778888899999999999998 864 4566665
No 260
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=2.4e-05 Score=78.48 Aligned_cols=128 Identities=14% Similarity=0.126 Sum_probs=88.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCC-----------C--EEEEeCchhhhhhhhhhhHHHHHHHHHHHh-----c
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEAGV-----------P--FFYRAGSEFEEMFVGVGARRVRSLFQAAKK-----K 168 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~~~-----------~--~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~-----~ 168 (521)
.+.++..||+|+.|+||+.+++.+++.+.+ | +..++.. +. ..+...++.+.+.... +
T Consensus 15 ~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~--~i~vd~Ir~l~~~~~~~~~~~~ 89 (299)
T PRK07132 15 NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DK--DLSKSEFLSAINKLYFSSFVQS 89 (299)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CC--cCCHHHHHHHHHHhccCCcccC
Confidence 345668999999999999999999998632 1 2222200 00 0122345555444421 3
Q ss_pred CCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHH
Q 009974 169 APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGR 248 (521)
Q Consensus 169 ~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r 248 (521)
...|++||++|.+ .....|.|+..++. +...+++|.+|+.++.+-+.+++ |. ..+.|++|+.++.
T Consensus 90 ~~KvvII~~~e~m----------~~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~~l 154 (299)
T PRK07132 90 QKKILIIKNIEKT----------SNSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQKI 154 (299)
T ss_pred CceEEEEeccccc----------CHHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHHHH
Confidence 4569999999888 45677899999986 44556666666678888888877 66 5789999998888
Q ss_pred HHHHHH
Q 009974 249 QEILEL 254 (521)
Q Consensus 249 ~~il~~ 254 (521)
...+..
T Consensus 155 ~~~l~~ 160 (299)
T PRK07132 155 LAKLLS 160 (299)
T ss_pred HHHHHH
Confidence 776654
No 261
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.23 E-value=6e-06 Score=78.66 Aligned_cols=114 Identities=14% Similarity=0.212 Sum_probs=65.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhh-hhh----------------------hhhHHHH
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-FVG----------------------VGARRVR 159 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~-~~g----------------------~~~~~i~ 159 (521)
|.+...-++++||||+|||+++..++... +.+.++++...+... +.. .....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 34445668899999999999999988643 667888887652111 000 0011133
Q ss_pred HHHHHHHhcCCcEEEEccccccccCCcCCCc-ccHHHHHHHHHhhhcCccCCceEEEeecC
Q 009974 160 SLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG-HTKKTLHQLLVEMDGFEQNEGIILMAATN 219 (521)
Q Consensus 160 ~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~-~~~~~l~~ll~~l~~~~~~~~vivI~ttn 219 (521)
.+...+....|++|+||-+..+......... ...+.+..++..+..+....++.++.+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 3444445557899999999988532111111 11223333344444443456667776644
No 262
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.23 E-value=1.4e-05 Score=94.88 Aligned_cols=177 Identities=18% Similarity=0.228 Sum_probs=99.2
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE---EEEeCc----
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF---FYRAGS---- 144 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~---~~i~~~---- 144 (521)
+...+++++|.++..+++..++.. .....+-+-|+||+|+||||+|+++++....+| +.++..
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 345789999999988888776642 122345788999999999999999988764432 111110
Q ss_pred ---hhhh----hh---hhhhhHHHH-------------HHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHH
Q 009974 145 ---EFEE----MF---VGVGARRVR-------------SLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 201 (521)
Q Consensus 145 ---~~~~----~~---~g~~~~~i~-------------~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~ 201 (521)
.+.. .+ .....+.+. ...+..-..++.+|+||++|.. ..+..+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~------------~~l~~L~~ 316 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ------------DVLDALAG 316 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH------------HHHHHHHh
Confidence 0000 00 000000011 1112222345678999998643 22333333
Q ss_pred hhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCccc----HHHHHhcCCCC
Q 009974 202 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVD----VKAIARGTPGF 277 (521)
Q Consensus 202 ~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~----l~~la~~~~g~ 277 (521)
..+.+ ..+-.||.||.+...+ +....++.+.++.|+.++..+++..++.+..... .+ ...+++++.|.
T Consensus 317 ~~~~~--~~GsrIIiTTrd~~vl-----~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv~~c~GL 388 (1153)
T PLN03210 317 QTQWF--GSGSRIIVITKDKHFL-----RAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELASEVALRAGNL 388 (1153)
T ss_pred hCccC--CCCcEEEEEeCcHHHH-----HhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHhCCC
Confidence 22222 2233455566644332 2124577899999999999999988875433221 22 23456666665
Q ss_pred C
Q 009974 278 N 278 (521)
Q Consensus 278 s 278 (521)
.
T Consensus 389 P 389 (1153)
T PLN03210 389 P 389 (1153)
T ss_pred c
Confidence 4
No 263
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.20 E-value=5.2e-06 Score=85.66 Aligned_cols=222 Identities=19% Similarity=0.220 Sum_probs=122.4
Q ss_pred cccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhhhhhHH
Q 009974 78 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARR 157 (521)
Q Consensus 78 di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~ 157 (521)
+|.|++++|+.|.-++.--.....-..+.++-.-+|+|.|.||+.||-|.+.+.+-+-...+..--.+ .-+|-.+.-
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS---SGVGLTAAV 419 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS---SGVGLTAAV 419 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC---Cccccchhh
Confidence 57899999998877664321111111222333457999999999999999999987755555432111 011111111
Q ss_pred HHH-----------HHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHh----hh--cC--ccCCceEEEeec
Q 009974 158 VRS-----------LFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE----MD--GF--EQNEGIILMAAT 218 (521)
Q Consensus 158 i~~-----------~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~----l~--~~--~~~~~vivI~tt 218 (521)
+++ .+-.|. ..|-+|||+|.+... .+..+.+.+.+ +. |+ .-+.+.-|++++
T Consensus 420 mkDpvTgEM~LEGGALVLAD---~GICCIDEfDKM~e~-------DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAA 489 (721)
T KOG0482|consen 420 MKDPVTGEMVLEGGALVLAD---GGICCIDEFDKMDES-------DRTAIHEVMEQQTISIAKAGINTTLNARTSILAAA 489 (721)
T ss_pred hcCCCCCeeEeccceEEEcc---CceEeehhhhhhhhh-------hhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhc
Confidence 111 011111 248899999999432 22222222211 11 11 113456678888
Q ss_pred CCCC-------------CCCccccCCCccceEE-ecCCCCHHHHHHHHHHHhc--cCCCCCc-----ccHH------HHH
Q 009974 219 NLPD-------------ILDPALTRPGRFDRHI-VVPNPDVRGRQEILELYLQ--DKPLADD-----VDVK------AIA 271 (521)
Q Consensus 219 n~~~-------------~ld~al~r~gRf~~~i-~~~~P~~~~r~~il~~~l~--~~~~~~~-----~~l~------~la 271 (521)
|... .|+.||++ |||..+ -.+.|+.+.-..+.+|..- .....++ ++.. .++
T Consensus 490 NPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~a 567 (721)
T KOG0482|consen 490 NPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLA 567 (721)
T ss_pred CccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHH
Confidence 8642 57899998 999844 4457877666665555431 1111111 1111 111
Q ss_pred hcCC-----------------------------CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 009974 272 RGTP-----------------------------GFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRIL 314 (521)
Q Consensus 272 ~~~~-----------------------------g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~~ 314 (521)
+... ..|++-|-.+++-+...|..+-.+.+..+|+.+|++-+-
T Consensus 568 k~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme 639 (721)
T KOG0482|consen 568 KRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLME 639 (721)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 1111 235677777777777777777777777788887776543
No 264
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.15 E-value=3.8e-05 Score=76.68 Aligned_cols=159 Identities=18% Similarity=0.210 Sum_probs=84.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHh--cCCC---EEEEeCch------hhhh---hhhh---------hhHHHHHHHHHH
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGE--AGVP---FFYRAGSE------FEEM---FVGV---------GARRVRSLFQAA 165 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~--~~~~---~~~i~~~~------~~~~---~~g~---------~~~~i~~~f~~a 165 (521)
..+-+.|+|++|+|||++|+.+++. .... .+.++.+. +... ..+. ........+...
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 3457999999999999999999987 3322 22233221 1111 0000 112233333344
Q ss_pred HhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCH
Q 009974 166 KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDV 245 (521)
Q Consensus 166 ~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~ 245 (521)
-...+++|+||+++... .+..+...+... ..+..||.||....... ... .-...+.++..+.
T Consensus 98 L~~~~~LlVlDdv~~~~------------~~~~l~~~~~~~--~~~~kilvTTR~~~v~~-~~~---~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 98 LKDKRCLLVLDDVWDEE------------DLEELREPLPSF--SSGSKILVTTRDRSVAG-SLG---GTDKVIELEPLSE 159 (287)
T ss_dssp HCCTSEEEEEEEE-SHH------------HH-------HCH--HSS-EEEEEESCGGGGT-THH---SCEEEEECSS--H
T ss_pred hccccceeeeeeecccc------------cccccccccccc--ccccccccccccccccc-ccc---ccccccccccccc
Confidence 44558999999987651 222222222211 22345555766543211 111 1146899999999
Q ss_pred HHHHHHHHHHhccCC----CCCcccHHHHHhcCCCCCHHHHHHHH
Q 009974 246 RGRQEILELYLQDKP----LADDVDVKAIARGTPGFNGADLANLV 286 (521)
Q Consensus 246 ~~r~~il~~~l~~~~----~~~~~~l~~la~~~~g~s~~dl~~lv 286 (521)
++-.+++..+..... ...+.....+++.+.| .|-.|.-+.
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~a 203 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLIA 203 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 999999999875443 1122235788888876 466666554
No 265
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.12 E-value=1.2e-05 Score=90.42 Aligned_cols=205 Identities=15% Similarity=0.188 Sum_probs=125.2
Q ss_pred CCcCCcccccCcHHHHHHHHHHHHHhcCc--hhhhhcCCCCC-c-eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009974 71 KNVKTFKDVKGCDDAKQELVEVVEYLKNP--SKFTRLGGKLP-K-GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 146 (521)
Q Consensus 71 ~~~~~f~di~G~~~~k~~L~~~v~~l~~~--~~~~~~g~~~p-~-~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 146 (521)
..+....++.|.......+.+.+...+++ ..|...+.... . .++++||||+|||+.+..+|.+.|..++..|.++.
T Consensus 314 ~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~ 393 (871)
T KOG1968|consen 314 YQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDV 393 (871)
T ss_pred cccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcccc
Confidence 34445577777776655666655544322 12222111111 2 36999999999999999999999999999999876
Q ss_pred hhhhhhh-------hhHHHHHHH---HHHHh--cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEE
Q 009974 147 EEMFVGV-------GARRVRSLF---QAAKK--KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIL 214 (521)
Q Consensus 147 ~~~~~g~-------~~~~i~~~f---~~a~~--~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~viv 214 (521)
.+..... ....+...| ..... ..-.||++||+|.+... .+..+.++...+. ....-+
T Consensus 394 RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~-------dRg~v~~l~~l~~----ks~~Pi 462 (871)
T KOG1968|consen 394 RSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE-------DRGGVSKLSSLCK----KSSRPL 462 (871)
T ss_pred ccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch-------hhhhHHHHHHHHH----hccCCe
Confidence 5442211 112233333 00000 11238999999998541 2223333333333 334567
Q ss_pred EeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 009974 215 MAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIK 292 (521)
Q Consensus 215 I~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~ 292 (521)
|++||..+........ |-+.-++|+.|+.+.+..-+..++....+. .+..++.+... +++||+++++.-...
T Consensus 463 v~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~----~~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 463 VCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKL----SGGDIRQIIMQLQFW 535 (871)
T ss_pred EEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHh----cccCHHHHHHHHhhh
Confidence 7888876654442322 444678999999999998888887654433 34457777774 478999888766654
No 266
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=98.10 E-value=3.5e-05 Score=77.85 Aligned_cols=157 Identities=21% Similarity=0.254 Sum_probs=87.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEE---EEeCchhhhhhhhhhhHHHHHHHHHH------------------
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF---YRAGSEFEEMFVGVGARRVRSLFQAA------------------ 165 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~---~i~~~~~~~~~~g~~~~~i~~~f~~a------------------ 165 (521)
..+|+|++|||.-|||||+|.-.+-..+-. .. .+...+|... ..+++.++-.+-
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~-i~rkqRvHFh~fM~~----VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~ 185 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPP-IWRKQRVHFHGFMLS----VHKRMHELKQEQGAEKPGYAKSWEIDPLPV 185 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCc-hhhhhhhhHHHHHHH----HHHHHHHHHHhccccCccccccccCCccHH
Confidence 456999999999999999999888754321 10 1111122111 111111111110
Q ss_pred ----HhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCC-CCCCccccCCCccceEEec
Q 009974 166 ----KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP-DILDPALTRPGRFDRHIVV 240 (521)
Q Consensus 166 ----~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~-~~ld~al~r~gRf~~~i~~ 240 (521)
....-++|++||+..- +-...-++++|+..+- +.+|++++|+|++ +.|-..= +.+...+
T Consensus 186 vA~eIa~ea~lLCFDEfQVT-------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknG-----lQR~~F~ 249 (467)
T KOG2383|consen 186 VADEIAEEAILLCFDEFQVT-------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNG-----LQRENFI 249 (467)
T ss_pred HHHHHhhhceeeeechhhhh-------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcc-----hhhhhhh
Confidence 0111369999998643 1112335566665543 4589999999984 4443221 2233333
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCC---CC-CHHHHHHHHHHHH
Q 009974 241 PNPDVRGRQEILELYLQDKPLADDVDVKAIARGTP---GF-NGADLANLVNIAA 290 (521)
Q Consensus 241 ~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~---g~-s~~dl~~lv~~A~ 290 (521)
| -..+|++++.-..+.+.+|+...+.... .| +..|...++++-.
T Consensus 250 P------fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 250 P------FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred h------HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHH
Confidence 3 3467888888888888899884443221 12 3337777776655
No 267
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.09 E-value=2.8e-05 Score=72.41 Aligned_cols=32 Identities=41% Similarity=0.557 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009974 113 ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 144 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~ 144 (521)
++++||||||||+++..++.+. |.++++++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 7899999999999999887643 6777777654
No 268
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.09 E-value=1e-05 Score=68.47 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcC
Q 009974 113 ILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~~~ 135 (521)
|.|+||||+|||++|+.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988663
No 269
>PRK08118 topology modulation protein; Reviewed
Probab=98.07 E-value=1.1e-05 Score=74.01 Aligned_cols=101 Identities=20% Similarity=0.256 Sum_probs=63.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH 191 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~ 191 (521)
-|+++||||+||||+|+.|++.++.|++.++.--+...+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~-------------------------------------- 44 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGV-------------------------------------- 44 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCC--------------------------------------
Confidence 589999999999999999999999998876642211111100
Q ss_pred cHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhcc
Q 009974 192 TKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD 258 (521)
Q Consensus 192 ~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~ 258 (521)
.......++..+- ...+ +|.-.|.+..++..+. ++|..|.++.|...-...+++..++.
T Consensus 45 ~~~~~~~~~~~~~---~~~~--wVidG~~~~~~~~~l~---~~d~vi~Ld~p~~~~~~R~~~R~~~~ 103 (167)
T PRK08118 45 PKEEQITVQNELV---KEDE--WIIDGNYGGTMDIRLN---AADTIIFLDIPRTICLYRAFKRRVQY 103 (167)
T ss_pred CHHHHHHHHHHHh---cCCC--EEEeCCcchHHHHHHH---hCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 0111111111111 1122 3334455555554432 58899999999988888888887753
No 270
>PTZ00202 tuzin; Provisional
Probab=98.06 E-value=0.00038 Score=72.05 Aligned_cols=178 Identities=17% Similarity=0.260 Sum_probs=99.4
Q ss_pred CcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhh----
Q 009974 75 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF---- 150 (521)
Q Consensus 75 ~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~---- 150 (521)
.-.+++|.+....+|..++... ....|+-+.|+||+|||||++++.+...++.+.++++.....+.+
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~---------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg~eElLr~LL 330 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRL---------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRGTEDTLRSVV 330 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhcc---------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCCHHHHHHHHH
Confidence 4557799999888888877632 223455788999999999999999999999888877765322111
Q ss_pred --hhh--------hhHHHHHHHHHHHh--cCCcEEEE--ccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEe
Q 009974 151 --VGV--------GARRVRSLFQAAKK--KAPCIIFI--DEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMA 216 (521)
Q Consensus 151 --~g~--------~~~~i~~~f~~a~~--~~p~Il~I--DEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ 216 (521)
.|. ....+.+.+..+.. +...||+| -|-+.+ .++.|+....--+ .+-..+|+-
T Consensus 331 ~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l-----------~rvyne~v~la~d--rr~ch~v~e 397 (550)
T PTZ00202 331 KALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSL-----------QRVYNEVVALACD--RRLCHVVIE 397 (550)
T ss_pred HHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcH-----------HHHHHHHHHHHcc--chhheeeee
Confidence 111 11223333333222 23334443 343333 4455544433211 111122221
Q ss_pred ecCCCCCCC--ccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHH
Q 009974 217 ATNLPDILD--PALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLV 286 (521)
Q Consensus 217 ttn~~~~ld--~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv 286 (521)
- ..+.|. ...+. |+| ...+|..+.++-....++.+.. .++..+.. +-|-+..|+..++
T Consensus 398 v--pleslt~~~~~lp--rld-f~~vp~fsr~qaf~y~~h~~da------l~l~~fve-~vgtns~d~del~ 457 (550)
T PTZ00202 398 V--PLESLTIANTLLP--RLD-FYLVPNFSRSQAFAYTQHAIDA------LSLEHFVD-VVGTNSNDLDELL 457 (550)
T ss_pred e--hHhhcchhcccCc--cce-eEecCCCCHHHHHHHHhhccch------HHhhHHHH-hhcCCcccHHHHH
Confidence 1 112222 12233 776 5667888888888877776643 33333333 3456677777776
No 271
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.06 E-value=2.3e-05 Score=83.24 Aligned_cols=79 Identities=24% Similarity=0.424 Sum_probs=55.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhh------hh--------hhHHHHHHHHHHHhc
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV------GV--------GARRVRSLFQAAKKK 168 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~------g~--------~~~~i~~~f~~a~~~ 168 (521)
|..+..-++|+||||+|||+|+..++... +.++++++..+...... |. ....+..+++.....
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 33444568899999999999999998755 67888888765433221 10 112345566666777
Q ss_pred CCcEEEEccccccccC
Q 009974 169 APCIIFIDEIDAVGST 184 (521)
Q Consensus 169 ~p~Il~IDEiD~l~~~ 184 (521)
.|.+|+||++..+...
T Consensus 156 ~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCEEEEechhhhccc
Confidence 8999999999988543
No 272
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.02 E-value=3.1e-05 Score=80.12 Aligned_cols=78 Identities=27% Similarity=0.426 Sum_probs=53.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhh------hh--------hhHHHHHHHHHHHhcC
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV------GV--------GARRVRSLFQAAKKKA 169 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~------g~--------~~~~i~~~f~~a~~~~ 169 (521)
..+..-++|+||||+|||+++..+|... +.++++++..+-..... |. ....+..+++......
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~ 158 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELK 158 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcC
Confidence 3444568999999999999999998754 45788887654322211 10 1123455666667778
Q ss_pred CcEEEEccccccccC
Q 009974 170 PCIIFIDEIDAVGST 184 (521)
Q Consensus 170 p~Il~IDEiD~l~~~ 184 (521)
|.+|+||++..+...
T Consensus 159 ~~lVVIDSIq~l~~~ 173 (372)
T cd01121 159 PDLVIIDSIQTVYSS 173 (372)
T ss_pred CcEEEEcchHHhhcc
Confidence 999999999988543
No 273
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.01 E-value=0.00013 Score=73.58 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=92.9
Q ss_pred cccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhh--------
Q 009974 78 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-------- 149 (521)
Q Consensus 78 di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~-------- 149 (521)
.+.+.+.....|..++-. .....|..+.|||-+|||||.+.+.+-+.++.+.+.++|-+....
T Consensus 7 ~v~~Re~qi~~L~~Llg~---------~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGN---------NSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred CccchHHHHHHHHHHhCC---------CCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHH
Confidence 456777766666655531 123467788999999999999999999999999999988654221
Q ss_pred -------hhhhh----hHHHH---HHHHH--HHhc--CCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCc
Q 009974 150 -------FVGVG----ARRVR---SLFQA--AKKK--APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEG 211 (521)
Q Consensus 150 -------~~g~~----~~~i~---~~f~~--a~~~--~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~ 211 (521)
..|.. ...+. ..|.+ +... ....|++|.+|.+-. .....++.++..-+-... ..
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD-------~~a~ll~~l~~L~el~~~-~~ 149 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD-------MDAILLQCLFRLYELLNE-PT 149 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc-------cchHHHHHHHHHHHHhCC-Cc
Confidence 01111 11222 22333 2122 245788999999932 233455555543332222 23
Q ss_pred eEEEeecCCCCCCCccccCCCccc-eEEecCCCCHHHHHHHHHHHh
Q 009974 212 IILMAATNLPDILDPALTRPGRFD-RHIVVPNPDVRGRQEILELYL 256 (521)
Q Consensus 212 vivI~ttn~~~~ld~al~r~gRf~-~~i~~~~P~~~~r~~il~~~l 256 (521)
+.++...-.+.. .-+.+-|-++ ..++||.|+.++...|+.+--
T Consensus 150 i~iils~~~~e~--~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 150 IVIILSAPSCEK--QYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred eEEEEeccccHH--HhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 333333222211 1122223443 378999999999999886543
No 274
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.99 E-value=3.3e-05 Score=77.22 Aligned_cols=170 Identities=19% Similarity=0.211 Sum_probs=90.2
Q ss_pred CcccccCcHHHHHHHHHHHHHhcCchh----hhhcC---CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE-EEEeCchh
Q 009974 75 TFKDVKGCDDAKQELVEVVEYLKNPSK----FTRLG---GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF-FYRAGSEF 146 (521)
Q Consensus 75 ~f~di~G~~~~k~~L~~~v~~l~~~~~----~~~~g---~~~p~~vLL~GppGtGKT~la~alA~~~~~~~-~~i~~~~~ 146 (521)
+|.+=.-+..+...|.++.+.+..+.. +..+. ..+|+|+.|||+-|.|||+|.-.....+..+- ..+....|
T Consensus 23 ~~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~F 102 (367)
T COG1485 23 TFQPDPAQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRF 102 (367)
T ss_pred CCCCChHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHH
Confidence 333323344556666666664332211 11122 34789999999999999999999988764432 22222222
Q ss_pred hhh-------hhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecC
Q 009974 147 EEM-------FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 219 (521)
Q Consensus 147 ~~~-------~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn 219 (521)
... ..|.. .-+..+-.... ..-.||+|||+..- +-...-.+..|+..|= ..+|++|+|+|
T Consensus 103 M~~vH~~l~~l~g~~-dpl~~iA~~~~-~~~~vLCfDEF~Vt-------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN 169 (367)
T COG1485 103 MARVHQRLHTLQGQT-DPLPPIADELA-AETRVLCFDEFEVT-------DIADAMILGRLLEALF----ARGVVLVATSN 169 (367)
T ss_pred HHHHHHHHHHHcCCC-CccHHHHHHHH-hcCCEEEeeeeeec-------ChHHHHHHHHHHHHHH----HCCcEEEEeCC
Confidence 211 11111 00001111111 11249999998642 1123445667776664 45899999999
Q ss_pred CC-CCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHH
Q 009974 220 LP-DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVK 268 (521)
Q Consensus 220 ~~-~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~ 268 (521)
.+ +.|-+. ++.+.-.+| -.++++.++.-..++...|+.
T Consensus 170 ~~P~~LY~d-----GlqR~~FLP------~I~li~~~~~v~~vD~~~DYR 208 (367)
T COG1485 170 TAPDNLYKD-----GLQRERFLP------AIDLIKSHFEVVNVDGPVDYR 208 (367)
T ss_pred CChHHhccc-----chhHHhhHH------HHHHHHHheEEEEecCCcccc
Confidence 74 443222 232222222 235777777766666666653
No 275
>PHA00729 NTP-binding motif containing protein
Probab=97.98 E-value=1e-05 Score=77.21 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=22.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~ 135 (521)
+++|+|+||||||++|.+++.+++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999875
No 276
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.95 E-value=2.4e-05 Score=75.87 Aligned_cols=74 Identities=26% Similarity=0.400 Sum_probs=49.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH------hcCCCEEEEeCchhhhhh-hhhhhHHHHHHHHHHHh--------cCCcEEEE
Q 009974 111 KGILLTGAPGTGKTLLAKAIAG------EAGVPFFYRAGSEFEEMF-VGVGARRVRSLFQAAKK--------KAPCIIFI 175 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~------~~~~~~~~i~~~~~~~~~-~g~~~~~i~~~f~~a~~--------~~p~Il~I 175 (521)
..+||.||.|.||+++|+-+.. ++..+|+.+||..+...- ....-..++..|.-|+. .....+|+
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfl 288 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFL 288 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEeh
Confidence 3599999999999999999854 567899999998875431 11111222233322221 12359999
Q ss_pred ccccccccC
Q 009974 176 DEIDAVGST 184 (521)
Q Consensus 176 DEiD~l~~~ 184 (521)
|||..++..
T Consensus 289 deigelgad 297 (531)
T COG4650 289 DEIGELGAD 297 (531)
T ss_pred HhhhhcCcc
Confidence 999999653
No 277
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.93 E-value=3.2e-05 Score=73.84 Aligned_cols=24 Identities=46% Similarity=0.744 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAG 132 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~ 132 (521)
.|..+||||+||+|||++|+.++.
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC
Confidence 456799999999999999999963
No 278
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.92 E-value=6.9e-05 Score=66.79 Aligned_cols=26 Identities=42% Similarity=0.645 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.+..+.++||||+||||++.-++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 34569999999999999999999765
No 279
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.92 E-value=0.00039 Score=68.06 Aligned_cols=94 Identities=26% Similarity=0.320 Sum_probs=58.1
Q ss_pred ccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC-----CCEEEE--eCchh----
Q 009974 79 VKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG-----VPFFYR--AGSEF---- 146 (521)
Q Consensus 79 i~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~-----~~~~~i--~~~~~---- 146 (521)
+.|+.-+++.+-..+.. +.++. .+.|-.+-|+|+|||||+++++.||+.+- .|++.. ....|
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 67777777777666654 33321 33455677899999999999999999652 233311 11111
Q ss_pred -hhhhhhhhhHHHHHHHHHHHhcCCcEEEEcccccc
Q 009974 147 -EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAV 181 (521)
Q Consensus 147 -~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l 181 (521)
.+.|.. +....+-..++..+.+++++||.|.|
T Consensus 158 ~ie~Yk~---eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 158 KIEDYKE---ELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred HHHHHHH---HHHHHHHHHHHhcCCceEEechhhhc
Confidence 222222 22233444455666789999999999
No 280
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.91 E-value=5.3e-05 Score=73.02 Aligned_cols=39 Identities=31% Similarity=0.373 Sum_probs=31.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 144 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~ 144 (521)
|.+...-++++||||+|||+++..+|.+. +.+++++++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 34444568999999999999999998744 7788888876
No 281
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.90 E-value=5.1e-05 Score=76.55 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=66.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhh-h---------------hhhhhHHHHHHHHHHH
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-F---------------VGVGARRVRSLFQAAK 166 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~-~---------------~g~~~~~i~~~f~~a~ 166 (521)
|.+..+.++++||||||||+||..++.+. +.+++++++...... + ....++.+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 33444568899999999999988876544 677777776442211 0 0111222333333345
Q ss_pred hcCCcEEEEccccccccCCcCCC-------cccHHHHHHHHHhhhcCccCCceEEEeecC
Q 009974 167 KKAPCIIFIDEIDAVGSTRKQWE-------GHTKKTLHQLLVEMDGFEQNEGIILMAATN 219 (521)
Q Consensus 167 ~~~p~Il~IDEiD~l~~~~~~~~-------~~~~~~l~~ll~~l~~~~~~~~vivI~ttn 219 (521)
...+.+|+||-+..+.+...-.. +...+.+.+++..+...-...++.+|.+..
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 56789999999999875421110 111233445555555554566677776643
No 282
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.90 E-value=0.00034 Score=72.38 Aligned_cols=93 Identities=13% Similarity=0.135 Sum_probs=52.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh----cCCCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCC
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGE----AGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTR 185 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~----~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~ 185 (521)
..++++.||||||||+++.+++.. .| -.++.+.+..... . ..+.. -....+|+|||+..+.-.
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~----~---~~lg~--v~~~DlLI~DEvgylp~~- 275 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS----T---RQIGL--VGRWDVVAFDEVATLKFA- 275 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH----H---HHHhh--hccCCEEEEEcCCCCcCC-
Confidence 458999999999999999998876 23 2222222222110 1 11111 134579999999987432
Q ss_pred cCCCcccHHHHHHHHHhhhc---------CccCCceEEEeecCC
Q 009974 186 KQWEGHTKKTLHQLLVEMDG---------FEQNEGIILMAATNL 220 (521)
Q Consensus 186 ~~~~~~~~~~l~~ll~~l~~---------~~~~~~vivI~ttn~ 220 (521)
.....+..+...|+. ...+..+++++-+|.
T Consensus 276 -----~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 276 -----KPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPL 314 (449)
T ss_pred -----chHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCC
Confidence 122344444444542 122345777776654
No 283
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.89 E-value=3.1e-05 Score=89.07 Aligned_cols=133 Identities=26% Similarity=0.351 Sum_probs=91.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhh---h----hhh--hhHHH--HHHHHHHHhcCCcEEEEcccc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM---F----VGV--GARRV--RSLFQAAKKKAPCIIFIDEID 179 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~---~----~g~--~~~~i--~~~f~~a~~~~p~Il~IDEiD 179 (521)
+++||.|.||+|||++..++|+..|-.++.++.++-.+. + .++ ++-+. ..++...+.+ .-|++||+.
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G--~WVlLDEiN 1621 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG--GWVLLDEIN 1621 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC--CEEEeehhh
Confidence 579999999999999999999999999999998753221 1 111 11111 1223333333 489999987
Q ss_pred ccccCCcCCCcccHHHHHHHHHhhhc------------CccCCceEEEeecCCCC------CCCccccCCCccceEEecC
Q 009974 180 AVGSTRKQWEGHTKKTLHQLLVEMDG------------FEQNEGIILMAATNLPD------ILDPALTRPGRFDRHIVVP 241 (521)
Q Consensus 180 ~l~~~~~~~~~~~~~~l~~ll~~l~~------------~~~~~~vivI~ttn~~~------~ld~al~r~gRf~~~i~~~ 241 (521)
-. .+.++..|-.++|. +.-++++.|+||-|..+ .||..++. ||. +++++
T Consensus 1622 La----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV~~d 1688 (4600)
T COG5271 1622 LA----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VVKMD 1688 (4600)
T ss_pred hh----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eEEec
Confidence 54 45566555555553 23356788888888653 58888888 894 77888
Q ss_pred CCCHHHHHHHHHHHhcc
Q 009974 242 NPDVRGRQEILELYLQD 258 (521)
Q Consensus 242 ~P~~~~r~~il~~~l~~ 258 (521)
..+.++...|..+....
T Consensus 1689 ~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1689 GLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred ccccchHHHHHHhhCCc
Confidence 88888887777776653
No 284
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.86 E-value=9.8e-06 Score=76.33 Aligned_cols=123 Identities=18% Similarity=0.188 Sum_probs=58.7
Q ss_pred EEEEcCCCCcHHHHHHHH-HH---hcCCCEEEEeCchhhhh----hhhhhhH-------------HHHHHHHHHHhcCCc
Q 009974 113 ILLTGAPGTGKTLLAKAI-AG---EAGVPFFYRAGSEFEEM----FVGVGAR-------------RVRSLFQAAKKKAPC 171 (521)
Q Consensus 113 vLL~GppGtGKT~la~al-A~---~~~~~~~~i~~~~~~~~----~~g~~~~-------------~i~~~f~~a~~~~p~ 171 (521)
.+++|.||+|||+.|-.. .. ..|.+++. |...+.-. +.+.... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999987655 33 23666665 54322110 0000000 001111111111457
Q ss_pred EEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCC
Q 009974 172 IIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNP 243 (521)
Q Consensus 172 Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P 243 (521)
+++|||++.+.+.+..........+ ..+.. ....++-++.+|..+..+|+.+++ +.+.++.+..+
T Consensus 82 liviDEa~~~~~~r~~~~~~~~~~~----~~l~~-hRh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKKVPEII----EFLAQ-HRHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-T----HHH----HGGGG-CCCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred EEEEECChhhcCCCccccccchHHH----HHHHH-hCcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 9999999999877655221222233 33322 235567888899999999998876 77777666544
No 285
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.85 E-value=1.4e-05 Score=68.93 Aligned_cols=31 Identities=39% Similarity=0.737 Sum_probs=27.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 009974 113 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 143 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~~~~~~~~i~~ 143 (521)
|+|.||||+||||+|+.||+.++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988776543
No 286
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.84 E-value=0.00019 Score=69.51 Aligned_cols=76 Identities=21% Similarity=0.278 Sum_probs=46.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhh------h-------------------------
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV------G------------------------- 152 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~------g------------------------- 152 (521)
.+....++++||||||||+++..++... +.+.++++..+-...+. |
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNS 100 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChH
Confidence 3444579999999999999986554433 56777776542211100 0
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEccccccc
Q 009974 153 VGARRVRSLFQAAKKKAPCIIFIDEIDAVG 182 (521)
Q Consensus 153 ~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~ 182 (521)
.....+..+........|.+++|||+-.+.
T Consensus 101 ~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 101 EKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 001223344444445568899999998764
No 287
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.83 E-value=0.00017 Score=70.07 Aligned_cols=40 Identities=28% Similarity=0.451 Sum_probs=31.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEEeCch
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAGSE 145 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~---~~~~~~~i~~~~ 145 (521)
|.+.+..++++||||||||+++..++.+ .+.++++++..+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 4555677999999999999999999754 367777776643
No 288
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.81 E-value=0.00013 Score=72.37 Aligned_cols=160 Identities=21% Similarity=0.319 Sum_probs=94.3
Q ss_pred cccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHH---hcCCCEEEEeCchh--hhh--
Q 009974 78 DVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAG---EAGVPFFYRAGSEF--EEM-- 149 (521)
Q Consensus 78 di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~---~~~~~~~~i~~~~~--~~~-- 149 (521)
.+.|..+..+.+.+++.. .... -.+.+++.||.|+|||++....-. +.|-.|+.+..... .++
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~g---------EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHG---------ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhc---------CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 347777777778887765 1111 124799999999999987655433 55666665433221 110
Q ss_pred -----------------hhhhhhHHHHHHHHHHHhc-----CCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc
Q 009974 150 -----------------FVGVGARRVRSLFQAAKKK-----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 207 (521)
Q Consensus 150 -----------------~~g~~~~~i~~~f~~a~~~-----~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~ 207 (521)
..|.....+..++...+.+ .+.|.++||||-+.+. ..+..+..++..-. .
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h------~rQtllYnlfDisq--s 167 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH------SRQTLLYNLFDISQ--S 167 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc------hhhHHHHHHHHHHh--h
Confidence 1122233344444444332 2345556899988543 12233444443333 2
Q ss_pred cCCceEEEeecCCCCC---CCccccCCCccceE-EecCCC-CHHHHHHHHHHHh
Q 009974 208 QNEGIILMAATNLPDI---LDPALTRPGRFDRH-IVVPNP-DVRGRQEILELYL 256 (521)
Q Consensus 208 ~~~~vivI~ttn~~~~---ld~al~r~gRf~~~-i~~~~P-~~~~r~~il~~~l 256 (521)
.+.++.||+.|.+.+. |.....+ ||... |++++| ...+-..+++..+
T Consensus 168 ~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 168 ARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 4567889998887764 4566666 99764 665543 6778888888777
No 289
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.80 E-value=0.001 Score=69.72 Aligned_cols=134 Identities=19% Similarity=0.203 Sum_probs=78.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH 191 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~ 191 (521)
.++++||.+|||||+++.+.+...-..++++..+........ ......+..+.....+.+|||||+.+-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~~-------- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVPD-------- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCchh--------
Confidence 799999999999999999988876556666665554332211 1122223333322446999999998721
Q ss_pred cHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHH-------------HHHHHhcc
Q 009974 192 TKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQE-------------ILELYLQD 258 (521)
Q Consensus 192 ~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~-------------il~~~l~~ 258 (521)
....+..+. |... . .+++.+++........+-.-+||. ..+.+.+.+..+... .++.|+..
T Consensus 109 W~~~lk~l~---d~~~-~-~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~~Yl~~ 182 (398)
T COG1373 109 WERALKYLY---DRGN-L-DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKLKGEEIEPSKLELLFEKYLET 182 (398)
T ss_pred HHHHHHHHH---cccc-c-eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 233344433 2111 1 344444433322223333335785 577788888888754 46666655
Q ss_pred CCC
Q 009974 259 KPL 261 (521)
Q Consensus 259 ~~~ 261 (521)
-++
T Consensus 183 GGf 185 (398)
T COG1373 183 GGF 185 (398)
T ss_pred CCC
Confidence 444
No 290
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.80 E-value=0.00027 Score=74.98 Aligned_cols=60 Identities=25% Similarity=0.281 Sum_probs=37.6
Q ss_pred ccCcHHHHHHHHHHHHH--hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 79 VKGCDDAKQELVEVVEY--LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 79 i~G~~~~k~~L~~~v~~--l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
|.|..++|..+.-.+-- -+++..-. ..+-.-++||+|.|||||+-+.+.+++-....++.
T Consensus 451 IyGh~~VK~AvAlaLfGGv~kn~~~kh--kvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~t 512 (854)
T KOG0477|consen 451 IYGHEDVKRAVALALFGGVPKNPGGKH--KVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFT 512 (854)
T ss_pred hhchHHHHHHHHHHHhcCCccCCCCCc--eeccceeEEEecCCCccHHHHHHHHHhcCcceeEe
Confidence 56777766655443321 11111100 01122469999999999999999999988776664
No 291
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.79 E-value=0.00014 Score=69.75 Aligned_cols=39 Identities=33% Similarity=0.372 Sum_probs=30.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 144 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~ 144 (521)
|.....-++++||||+|||+++..+|.+. +.++++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 33444558999999999999999998764 5677777654
No 292
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.79 E-value=0.00013 Score=73.79 Aligned_cols=113 Identities=16% Similarity=0.155 Sum_probs=65.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhh-hh---------------hhhhHHHHHHHHHHHh
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-FV---------------GVGARRVRSLFQAAKK 167 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~-~~---------------g~~~~~i~~~f~~a~~ 167 (521)
.+..+-+.++||||||||+||-.++.+. +.+.++++...-... +. ...++.+..+-...+.
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s 131 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRS 131 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhc
Confidence 3334568899999999999999887543 677888876432111 00 0112222223233455
Q ss_pred cCCcEEEEccccccccCCcCC---Cc----ccHHHHHHHHHhhhcCccCCceEEEeecC
Q 009974 168 KAPCIIFIDEIDAVGSTRKQW---EG----HTKKTLHQLLVEMDGFEQNEGIILMAATN 219 (521)
Q Consensus 168 ~~p~Il~IDEiD~l~~~~~~~---~~----~~~~~l~~ll~~l~~~~~~~~vivI~ttn 219 (521)
+.+.+|+||-+-.+.+..+.. .. ...+.+.+.+..+.......++.+|.+..
T Consensus 132 ~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 132 GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred cCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 678999999999987532211 00 11233445555555444456666666543
No 293
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.78 E-value=0.00041 Score=70.60 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=50.0
Q ss_pred CCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCC---CCCc------------cccCCCc
Q 009974 169 APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD---ILDP------------ALTRPGR 233 (521)
Q Consensus 169 ~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~---~ld~------------al~r~gR 233 (521)
.+-||||||+|++.+ ..+..++..+..+-...++++|.+.+... .+.. ..+. --
T Consensus 172 ~~iViiIDdLDR~~~----------~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLe-Ki 240 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSP----------EEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLE-KI 240 (325)
T ss_pred ceEEEEEcchhcCCc----------HHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHH-hh
Confidence 466999999999932 23445555555554557788887776421 1111 1111 03
Q ss_pred cceEEecCCCCHHHHHHHHHHHhcc
Q 009974 234 FDRHIVVPNPDVRGRQEILELYLQD 258 (521)
Q Consensus 234 f~~~i~~~~P~~~~r~~il~~~l~~ 258 (521)
|+..+.+|.|+..+...++...+..
T Consensus 241 iq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 241 IQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred cCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 6678999999999888887777543
No 294
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00023 Score=79.85 Aligned_cols=163 Identities=25% Similarity=0.363 Sum_probs=108.4
Q ss_pred CcccccCc-HHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEEeC
Q 009974 75 TFKDVKGC-DDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYRAG 143 (521)
Q Consensus 75 ~f~di~G~-~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~----------~~~~~~i~~ 143 (521)
.++-++|. ++ +++++++.|....+ ++-+|.|.||+|||.++.-+|+.. +..++.++.
T Consensus 184 kldPvigr~de---eirRvi~iL~Rrtk---------~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 184 KLDPVIGRHDE---EIRRVIEILSRKTK---------NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCCccCCchH---HHHHHHHHHhccCC---------CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 36778887 44 45555655443322 477999999999999999999864 234566665
Q ss_pred chh--hhhhhhhhhHHHHHHHHHHH-hcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCC
Q 009974 144 SEF--EEMFVGVGARRVRSLFQAAK-KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 220 (521)
Q Consensus 144 ~~~--~~~~~g~~~~~i~~~f~~a~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~ 220 (521)
..+ ..++.|+.+.+++.+...+. .+...||||||++-+.+...... .....+ +|..+- .+.++-+|+||..
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~--~~d~~n-lLkp~L---~rg~l~~IGatT~ 325 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG--AIDAAN-LLKPLL---ARGGLWCIGATTL 325 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch--HHHHHH-hhHHHH---hcCCeEEEecccH
Confidence 543 34567888899999999887 44567999999999976543311 122222 222222 2455888987764
Q ss_pred CC-----CCCccccCCCccceEEecCCCCHHHHHHHHHHHhcc
Q 009974 221 PD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD 258 (521)
Q Consensus 221 ~~-----~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~ 258 (521)
.. .-||++-| ||+ .+.++.|+.+....|+...-..
T Consensus 326 e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 326 ETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred HHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhh
Confidence 32 34899998 996 5677888877766666654433
No 295
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.75 E-value=0.00024 Score=68.47 Aligned_cols=108 Identities=20% Similarity=0.252 Sum_probs=61.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCchhhhh--------------hh------------h---
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEM--------------FV------------G--- 152 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~----~~~~~~i~~~~~~~~--------------~~------------g--- 152 (521)
|.+....+|++||||||||+++..++.+. |-++++++..+-... +. .
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 44556779999999999999999876433 788888876432111 00 0
Q ss_pred ----hhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecC
Q 009974 153 ----VGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 219 (521)
Q Consensus 153 ----~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn 219 (521)
........+.+......+.+++||-+..+. .. .........+..+...+. ..++.++.+.+
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~-~~~~~~r~~l~~l~~~l~----~~~~t~llt~~ 159 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LY-DDPEELRRFLRALIKFLK----SRGVTTLLTSE 159 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TS-SSGGGHHHHHHHHHHHHH----HTTEEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hc-CCHHHHHHHHHHHHHHHH----HCCCEEEEEEc
Confidence 011222333344455667899999999982 11 112233445556665554 33444444444
No 296
>PRK07261 topology modulation protein; Provisional
Probab=97.74 E-value=6e-05 Score=69.51 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=29.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 144 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~ 144 (521)
-|+++|+||+||||+|+.++...+.|++..+.-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 389999999999999999999999998876543
No 297
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.74 E-value=4.9e-05 Score=81.18 Aligned_cols=64 Identities=22% Similarity=0.349 Sum_probs=45.4
Q ss_pred CCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC-CCEEEEeC
Q 009974 74 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG-VPFFYRAG 143 (521)
Q Consensus 74 ~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~-~~~~~i~~ 143 (521)
.-|+|+.|++++++++.+.+..... .++. ..+.++|.||||+|||+||++||+.+. .|++.+.+
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~-----gl~~-~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQ-----GLEE-KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHH-----hcCC-CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 3599999999998887776632110 1111 224789999999999999999998663 46666543
No 298
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.74 E-value=0.00017 Score=82.71 Aligned_cols=181 Identities=21% Similarity=0.214 Sum_probs=101.7
Q ss_pred CceEEEEcCCCCcHHHH-HHHHHHhcCCCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcC---------------CcEE
Q 009974 110 PKGILLTGAPGTGKTLL-AKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKA---------------PCII 173 (521)
Q Consensus 110 p~~vLL~GppGtGKT~l-a~alA~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~---------------p~Il 173 (521)
-++++++||||+|||++ .-++-++.-..++++|.+..... ..+-.++++-..+- .-||
T Consensus 1494 ~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T------~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVL 1567 (3164)
T COG5245 1494 LRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMT------PSKLSVLERETEYYPNTGVVRLYPKPVVKDLVL 1567 (3164)
T ss_pred cceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCC------HHHHHHHHhhceeeccCCeEEEccCcchhheEE
Confidence 46899999999999984 67788888888888887653221 11222222222211 1399
Q ss_pred EEccccccccCCcCCCcccHHHHHHHHHhhhcCcc--------CCceEEEeecCCCCCCCccccCCCccc---eEEecCC
Q 009974 174 FIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ--------NEGIILMAATNLPDILDPALTRPGRFD---RHIVVPN 242 (521)
Q Consensus 174 ~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~--------~~~vivI~ttn~~~~ld~al~r~gRf~---~~i~~~~ 242 (521)
|.|||+ |...+.-.+...--.+.+++ +-.|+.. -.++++.|+||.+.+... ..-+-||- ..+++..
T Consensus 1568 FcDeIn-Lp~~~~y~~~~vI~FlR~l~-e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gR-v~~~eRf~r~~v~vf~~y 1644 (3164)
T COG5245 1568 FCDEIN-LPYGFEYYPPTVIVFLRPLV-ERQGFWSSIAVSWVTICGIILYGACNPGTDEGR-VKYYERFIRKPVFVFCCY 1644 (3164)
T ss_pred EeeccC-CccccccCCCceEEeeHHHH-HhcccccchhhhHhhhcceEEEccCCCCCCccc-CccHHHHhcCceEEEecC
Confidence 999998 53332222211111111222 1122322 256899999998865331 11112333 3678889
Q ss_pred CCHHHHHHHHHHHhccCCCCC-------------ccc--------HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 009974 243 PDVRGRQEILELYLQDKPLAD-------------DVD--------VKAIARGTPGFNGADLANLVNIAAIKAAVDGGEK 300 (521)
Q Consensus 243 P~~~~r~~il~~~l~~~~~~~-------------~~~--------l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~ 300 (521)
|.......|.+.++...-+-. .+. .....+...||+|+++-..++ +...++..+-+.
T Consensus 1645 pe~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr-~i~~yaeT~~~t 1722 (3164)
T COG5245 1645 PELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLR-AIFGYAETRIDT 1722 (3164)
T ss_pred cchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHH-HHHhHHhcCCCC
Confidence 999999999888775432110 011 111123336899999999987 444444433333
No 299
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00021 Score=74.18 Aligned_cols=111 Identities=13% Similarity=0.158 Sum_probs=64.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEEeCchhhh-------hhh---h------hhhHHHHHHHHHH
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRAGSEFEE-------MFV---G------VGARRVRSLFQAA 165 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~-------~~~~~~i~~~~~~~-------~~~---g------~~~~~i~~~f~~a 165 (521)
.|+.++|+||+|+||||++..+|..+ +..+..+++..+.. .|. | .....+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 46789999999999999999998754 23444444433211 110 1 1112333333333
Q ss_pred HhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccC-CceEEEeecCCCCCCCcccc
Q 009974 166 KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQN-EGIILMAATNLPDILDPALT 229 (521)
Q Consensus 166 ~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~-~~vivI~ttn~~~~ld~al~ 229 (521)
....+|+||.+..... ....+..+...++..... ..++|+.+|.....+...+.
T Consensus 253 --~~~DlVLIDTaGr~~~--------~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~ 307 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPK--------DFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFH 307 (388)
T ss_pred --CCCCEEEEcCCCCCcc--------CHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHH
Confidence 3346999999876621 122344555555544333 45777777777666664443
No 300
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.71 E-value=0.00022 Score=75.93 Aligned_cols=78 Identities=24% Similarity=0.338 Sum_probs=52.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhh------hh--------hhHHHHHHHHHHHhc
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV------GV--------GARRVRSLFQAAKKK 168 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~------g~--------~~~~i~~~f~~a~~~ 168 (521)
|..+..-++|+|+||+|||+|+..++... +.++++++..+-..... |. ....+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 34444568899999999999999997754 45788888754332211 10 012244555566667
Q ss_pred CCcEEEEcccccccc
Q 009974 169 APCIIFIDEIDAVGS 183 (521)
Q Consensus 169 ~p~Il~IDEiD~l~~ 183 (521)
.|.+|+||.+..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999998854
No 301
>PHA02624 large T antigen; Provisional
Probab=97.69 E-value=0.00019 Score=77.14 Aligned_cols=121 Identities=17% Similarity=0.136 Sum_probs=69.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhh-hhhhhhHHHHHHHHHHHhcCCcEEEEccccccccC
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGST 184 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~-~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~ 184 (521)
|.+.-+.++|+||||||||+++.+|++.++...+.++++.-... +.+ -+.. ..+++||++-.-.-.
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~FwL~-----------pl~D--~~~~l~dD~t~~~~~ 493 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFELG-----------CAID--QFMVVFEDVKGQPAD 493 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHHhh-----------hhhh--ceEEEeeeccccccc
Confidence 33344589999999999999999999999777777875543222 111 1111 138888887543221
Q ss_pred Cc-CCCcccHHHHHHHHHhhhcC-cc------CCc-----eEEEeecCCCCCCCccccCCCccceEEecCC
Q 009974 185 RK-QWEGHTKKTLHQLLVEMDGF-EQ------NEG-----IILMAATNLPDILDPALTRPGRFDRHIVVPN 242 (521)
Q Consensus 185 ~~-~~~~~~~~~l~~ll~~l~~~-~~------~~~-----vivI~ttn~~~~ld~al~r~gRf~~~i~~~~ 242 (521)
.. -..+..-.-+..|-..+||- .- ... -..|.|||. ..||..+.- ||..++.|..
T Consensus 494 ~~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 494 NKDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred cccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 11 00111111223445556654 10 011 234557774 456777766 8988888863
No 302
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.67 E-value=4.6e-05 Score=69.95 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=29.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
++..|+|+||||||||++|+.+|+.++.+++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 456899999999999999999999999998853
No 303
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.66 E-value=0.00016 Score=70.04 Aligned_cols=114 Identities=14% Similarity=0.128 Sum_probs=63.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCchh-hhh-hh-----------------------
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF-EEM-FV----------------------- 151 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~---------~~~~~~i~~~~~-~~~-~~----------------------- 151 (521)
|.+...-+.|+||||||||+++..++... +...++++..+- ... +.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 34445568899999999999999998543 256777776441 100 00
Q ss_pred --hhhhHHHHHHHHHHHhc-CCcEEEEccccccccCCcCCC---cccHHHHHHHHHhhhcCccCCceEEEeecC
Q 009974 152 --GVGARRVRSLFQAAKKK-APCIIFIDEIDAVGSTRKQWE---GHTKKTLHQLLVEMDGFEQNEGIILMAATN 219 (521)
Q Consensus 152 --g~~~~~i~~~f~~a~~~-~p~Il~IDEiD~l~~~~~~~~---~~~~~~l~~ll~~l~~~~~~~~vivI~ttn 219 (521)
......+..+-...... .+.+|+||-+..+........ ....+.+..++..+..+....++.|+.+..
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 00011112222223344 788999999998753211111 122344556666665554455666666543
No 304
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.00018 Score=74.13 Aligned_cols=109 Identities=18% Similarity=0.323 Sum_probs=60.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc----C-CCEEEEeCchhh-------hh---hhhhh------hHHHHHHHHHHHh
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA----G-VPFFYRAGSEFE-------EM---FVGVG------ARRVRSLFQAAKK 167 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~----~-~~~~~i~~~~~~-------~~---~~g~~------~~~i~~~f~~a~~ 167 (521)
....++|+||+|+||||++..||..+ + ..+..++...+. .. ..|.. ...+...+...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-- 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-- 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh--
Confidence 34679999999999999999999763 3 244445444431 00 11111 11222222222
Q ss_pred cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCcc-CCceEEEeecCCCCCCCccc
Q 009974 168 KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ-NEGIILMAATNLPDILDPAL 228 (521)
Q Consensus 168 ~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~-~~~vivI~ttn~~~~ld~al 228 (521)
....+|+||...... .+..+.+.+..+..... ...++|+.+|+..+.++..+
T Consensus 214 ~~~DlVLIDTaG~~~---------~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 214 RNKHMVLIDTIGMSQ---------RDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred cCCCEEEEcCCCCCc---------ccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 334799999975431 12334455555544332 34477777777776665443
No 305
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.63 E-value=0.00015 Score=64.23 Aligned_cols=34 Identities=38% Similarity=0.609 Sum_probs=27.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 113 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
++++||||+||||+|+.+++.++ ...++...+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~ 35 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRR 35 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHH
Confidence 78999999999999999999988 44455555443
No 306
>PRK10536 hypothetical protein; Provisional
Probab=97.63 E-value=0.00029 Score=68.46 Aligned_cols=22 Identities=45% Similarity=0.573 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~ 133 (521)
-+++.||+|||||++|.+++.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999885
No 307
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.62 E-value=0.00017 Score=69.17 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~ 133 (521)
-+-|.||+|||||||.+.+|.-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999983
No 308
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.60 E-value=0.00017 Score=66.87 Aligned_cols=68 Identities=28% Similarity=0.398 Sum_probs=40.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCC---CEEEEeC------------chhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGV---PFFYRAG------------SEFEEMFVGVGARRVRSLFQAAKKKAPCIIFID 176 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~---~~~~i~~------------~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~ID 176 (521)
=++|+|+||+|||++|+.+|+.+.- ..+.+.. .-+.+.|.....+....++..|-++ .+++.|
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalkn--~~VIvD 80 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALKN--YLVIVD 80 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhcc--eEEEEe
Confidence 4889999999999999999998732 2222211 1112223222223333345555443 488889
Q ss_pred ccccc
Q 009974 177 EIDAV 181 (521)
Q Consensus 177 EiD~l 181 (521)
+....
T Consensus 81 dtNYy 85 (261)
T COG4088 81 DTNYY 85 (261)
T ss_pred cccHH
Confidence 87766
No 309
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.60 E-value=0.00027 Score=66.82 Aligned_cols=103 Identities=24% Similarity=0.339 Sum_probs=56.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh-----cCCCE-------------EEEeCchhh----hhhhhhhhHHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE-----AGVPF-------------FYRAGSEFE----EMFVGVGARRVRSLFQAAKKK 168 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~-----~~~~~-------------~~i~~~~~~----~~~~g~~~~~i~~~f~~a~~~ 168 (521)
+-++|.||+|+||||+.+.++.. .|.++ ..++..+-. +.+.. ...++..+++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~-e~~~~~~iL~~~~~~ 104 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYA-ELRRLKEIVEKAKKG 104 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHH-HHHHHHHHHHhccCC
Confidence 47899999999999999999853 34332 111111100 01111 124566677766555
Q ss_pred CCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCC
Q 009974 169 APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 223 (521)
Q Consensus 169 ~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ 223 (521)
.|.++++||.-.-.. ..........++..+.. .+..+|.+|+.++.
T Consensus 105 ~p~llllDEp~~glD-----~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~ 150 (199)
T cd03283 105 EPVLFLLDEIFKGTN-----SRERQAASAAVLKFLKN----KNTIGIISTHDLEL 150 (199)
T ss_pred CCeEEEEecccCCCC-----HHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHH
Confidence 789999999643211 01112223344555431 24566667776653
No 310
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.60 E-value=0.00025 Score=68.24 Aligned_cols=114 Identities=16% Similarity=0.123 Sum_probs=63.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc---C------CCEEEEeCchhh-h-hhh---h------------------h
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---G------VPFFYRAGSEFE-E-MFV---G------------------V 153 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~---~------~~~~~i~~~~~~-~-~~~---g------------------~ 153 (521)
|.+...-+.|+||||+|||+++..+|... + ..+++++...-. . ... . .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 34444568899999999999999998753 3 566777664321 1 000 0 0
Q ss_pred hhHHHHHHHHHH----HhcCCcEEEEccccccccCCcCCC---cccHHHHHHHHHhhhcCccCCceEEEeecC
Q 009974 154 GARRVRSLFQAA----KKKAPCIIFIDEIDAVGSTRKQWE---GHTKKTLHQLLVEMDGFEQNEGIILMAATN 219 (521)
Q Consensus 154 ~~~~i~~~f~~a----~~~~p~Il~IDEiD~l~~~~~~~~---~~~~~~l~~ll~~l~~~~~~~~vivI~ttn 219 (521)
....+...+... ....+.+|+||-+..+........ ....+.+.+++..|..+....++.||.+..
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq 167 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQ 167 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEE
Confidence 011112222222 245678999999998854321111 122344556666666554455666665543
No 311
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.58 E-value=7e-05 Score=69.36 Aligned_cols=59 Identities=22% Similarity=0.366 Sum_probs=36.7
Q ss_pred ccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC---EEEEeCchh
Q 009974 79 VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP---FFYRAGSEF 146 (521)
Q Consensus 79 i~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~---~~~i~~~~~ 146 (521)
++|.++..+++...+. .. ....++.++|+||+|+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AA--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GT--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HH--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5788887777766654 11 12345689999999999999999998766433 777777665
No 312
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.57 E-value=0.00054 Score=64.64 Aligned_cols=111 Identities=23% Similarity=0.432 Sum_probs=63.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCC
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTR 185 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~ 185 (521)
|.+....++|.|+.|+|||++.+.|+.+ ++.-+...... ... ....... -|+.+||++.+...
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~~~------kd~----~~~l~~~--~iveldEl~~~~k~- 110 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDFDD------KDF----LEQLQGK--WIVELDELDGLSKK- 110 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccCCC------cHH----HHHHHHh--HheeHHHHhhcchh-
Confidence 4555567899999999999999999665 22111111110 111 1111112 38999999988422
Q ss_pred cCCCcccHHHHHHHHHhhh-cCc---------cCCceEEEeecCCCCCC-CccccCCCccceEEecCC
Q 009974 186 KQWEGHTKKTLHQLLVEMD-GFE---------QNEGIILMAATNLPDIL-DPALTRPGRFDRHIVVPN 242 (521)
Q Consensus 186 ~~~~~~~~~~l~~ll~~l~-~~~---------~~~~vivI~ttn~~~~l-d~al~r~gRf~~~i~~~~ 242 (521)
....+..++..-. .+. .....++|+|||..+-| |+.=-| || ..+.+..
T Consensus 111 ------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 111 ------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred ------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 2345555554321 111 12347889999998755 444455 77 4555543
No 313
>PF14516 AAA_35: AAA-like domain
Probab=97.57 E-value=0.0033 Score=64.33 Aligned_cols=169 Identities=17% Similarity=0.157 Sum_probs=89.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhh-------hhhh------------------------hhH
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-------FVGV------------------------GAR 156 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~-------~~g~------------------------~~~ 156 (521)
.-+.+.||..+|||++...+.+.+ +...+++++..+... +... ...
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~ 111 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKI 111 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChh
Confidence 368999999999999999887654 677788877654210 0000 111
Q ss_pred HHHHHHHHH---HhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc---cCCceEEEeecCCCCCCCccc-c
Q 009974 157 RVRSLFQAA---KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---QNEGIILMAATNLPDILDPAL-T 229 (521)
Q Consensus 157 ~i~~~f~~a---~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~---~~~~vivI~ttn~~~~ld~al-~ 229 (521)
.....|+.. ....|-||+|||+|.+.... ......+..+-...+.-. .-.++.+|.+...+..+.... .
T Consensus 112 ~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~----~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~ 187 (331)
T PF14516_consen 112 SCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP----QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQ 187 (331)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEechhhhccCc----chHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCC
Confidence 223334331 22468899999999996421 111222222222222111 112233332222221222111 2
Q ss_pred CCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHH
Q 009974 230 RPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVN 287 (521)
Q Consensus 230 r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~ 287 (521)
+|=.+...+.++.-+.++...+++.|-.. .. ...++.+-..+.|. |.=+..+|.
T Consensus 188 SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~-~~~~~~l~~~tgGh-P~Lv~~~~~ 241 (331)
T PF14516_consen 188 SPFNIGQPIELPDFTPEEVQELAQRYGLE--FS-QEQLEQLMDWTGGH-PYLVQKACY 241 (331)
T ss_pred CCcccccceeCCCCCHHHHHHHHHhhhcc--CC-HHHHHHHHHHHCCC-HHHHHHHHH
Confidence 22123446777888899998888877433 22 22377777777773 444444444
No 314
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.57 E-value=0.00019 Score=67.66 Aligned_cols=97 Identities=26% Similarity=0.309 Sum_probs=53.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhh----hhhhhHHHHHHHHHHH---------hcCCcEEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF----VGVGARRVRSLFQAAK---------KKAPCIIFI 175 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~----~g~~~~~i~~~f~~a~---------~~~p~Il~I 175 (521)
-.++.||||||||++++.+...+ +..++.+....-.... .+.....+..++.... .....+|+|
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliV 99 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIV 99 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEE
Confidence 58889999999999999987644 5677766654322111 1111122222222211 122369999
Q ss_pred ccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCC
Q 009974 176 DEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 220 (521)
Q Consensus 176 DEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~ 220 (521)
||+..+ ....+..++..+.. ...++++++-.+.
T Consensus 100 DEasmv----------~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 100 DEASMV----------DSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp SSGGG-----------BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred eccccc----------CHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 999877 34456666666553 3456777776653
No 315
>PRK04296 thymidine kinase; Provisional
Probab=97.57 E-value=0.00039 Score=65.26 Aligned_cols=70 Identities=17% Similarity=0.156 Sum_probs=41.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc-h---hhh---hhhhhh-----hHHHHHHHHHHH--hcCCcEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS-E---FEE---MFVGVG-----ARRVRSLFQAAK--KKAPCIIF 174 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~-~---~~~---~~~g~~-----~~~i~~~f~~a~--~~~p~Il~ 174 (521)
-.+++||||+|||+++..++.++ +..++.+... + ... ...|.. ......++..+. ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998888765 5555555321 1 000 001110 112233444432 34567999
Q ss_pred Ecccccc
Q 009974 175 IDEIDAV 181 (521)
Q Consensus 175 IDEiD~l 181 (521)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999765
No 316
>PRK05973 replicative DNA helicase; Provisional
Probab=97.56 E-value=0.00093 Score=64.65 Aligned_cols=39 Identities=36% Similarity=0.329 Sum_probs=29.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 144 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~ 144 (521)
|..+...+++.|+||+|||+++-.++.+. |.+.++++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 33444568899999999999999887644 7777777654
No 317
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.56 E-value=0.00061 Score=58.75 Aligned_cols=52 Identities=27% Similarity=0.409 Sum_probs=39.7
Q ss_pred ccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 77 KDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 77 ~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
++|.|+.-+.+.+.+.+.. +.++ ..+.|--+.|+||||||||++++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3589999988888887765 4332 22345556699999999999999999974
No 318
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.55 E-value=0.00034 Score=72.70 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=35.1
Q ss_pred cccCcHHHHHHHHHHHHHh---cCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 009974 78 DVKGCDDAKQELVEVVEYL---KNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF 139 (521)
Q Consensus 78 di~G~~~~k~~L~~~v~~l---~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~ 139 (521)
.|.|.+++|+.+.-++--= ..|+.. -.+-.-+|||-|.|||.|+-|.+-+-+-.-+.++
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK~LpDg~---~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVY 393 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRKRLPDGV---TLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVY 393 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccccCCCcc---eeccceeEEEecCCchhHHHHHHHHHhcCceEEE
Confidence 3567777776665444210 011110 0112246999999999999999998765544333
No 319
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.55 E-value=0.00075 Score=65.67 Aligned_cols=39 Identities=28% Similarity=0.391 Sum_probs=30.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCc
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGS 144 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~----~~~~~~i~~~ 144 (521)
|..+..-++|.|+||+|||+++..++... +.++++++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 45555678999999999999999887643 7788887753
No 320
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.55 E-value=0.00066 Score=58.80 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~ 134 (521)
+++++||+|+|||+++-.++...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999888887765
No 321
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.54 E-value=0.00016 Score=66.35 Aligned_cols=23 Identities=48% Similarity=0.746 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~ 134 (521)
.++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999887
No 322
>PRK06762 hypothetical protein; Provisional
Probab=97.53 E-value=0.0003 Score=64.34 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=32.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
|.-++|+|+||+||||+|+.+++.++..++.++...+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~ 40 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR 40 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH
Confidence 557899999999999999999999866677777655543
No 323
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.52 E-value=0.00076 Score=65.63 Aligned_cols=40 Identities=35% Similarity=0.517 Sum_probs=30.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEEeCch
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAGSE 145 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~---~~~~~~~i~~~~ 145 (521)
|.+....+|++||||||||+++..++.+ .|.+.++++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 4555677999999999999999877653 366777776543
No 324
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.52 E-value=0.00026 Score=70.00 Aligned_cols=94 Identities=22% Similarity=0.347 Sum_probs=56.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC----------CEEEEe-Cchhhhhhhhh-------------hhHHHHHHHHHHH
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGV----------PFFYRA-GSEFEEMFVGV-------------GARRVRSLFQAAK 166 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~----------~~~~i~-~~~~~~~~~g~-------------~~~~i~~~f~~a~ 166 (521)
.++++.||||+||||+.+++++...- ++..++ ..++...+.+. ...+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 48999999999999999999987632 222111 11221111000 0112334666677
Q ss_pred hcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCC
Q 009974 167 KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 221 (521)
Q Consensus 167 ~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~ 221 (521)
...|.++++||+.. ...+..++..+. .+..+|++++.+
T Consensus 192 ~~~P~villDE~~~------------~e~~~~l~~~~~-----~G~~vI~ttH~~ 229 (270)
T TIGR02858 192 SMSPDVIVVDEIGR------------EEDVEALLEALH-----AGVSIIATAHGR 229 (270)
T ss_pred hCCCCEEEEeCCCc------------HHHHHHHHHHHh-----CCCEEEEEechh
Confidence 78899999999531 233444544443 356778888754
No 325
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.51 E-value=0.00066 Score=62.50 Aligned_cols=34 Identities=32% Similarity=0.571 Sum_probs=29.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCch
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 145 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~ 145 (521)
.+++.||||+|||++|..++.+.+.+++++....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 4899999999999999999999888887776543
No 326
>PRK09354 recA recombinase A; Provisional
Probab=97.50 E-value=0.00041 Score=70.69 Aligned_cols=111 Identities=16% Similarity=0.159 Sum_probs=62.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEEeCchhhhh-hh---------------hhhhHHHHHHHHHHHh
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAGSEFEEM-FV---------------GVGARRVRSLFQAAKK 167 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~---~~~~~~~i~~~~~~~~-~~---------------g~~~~~i~~~f~~a~~ 167 (521)
.+..+-++++||||||||+|+-.++.+ .+...++++...-... +. ...++.+..+-...+.
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s 136 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRS 136 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 334456889999999999999988654 3677777776542111 10 0111222222233455
Q ss_pred cCCcEEEEccccccccCCcCC---C----cccHHHHHHHHHhhhcCccCCceEEEee
Q 009974 168 KAPCIIFIDEIDAVGSTRKQW---E----GHTKKTLHQLLVEMDGFEQNEGIILMAA 217 (521)
Q Consensus 168 ~~p~Il~IDEiD~l~~~~~~~---~----~~~~~~l~~ll~~l~~~~~~~~vivI~t 217 (521)
..+.+|+||-+-.+.+...-. . +...+.+.+.+..+...-...++.+|.+
T Consensus 137 ~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~t 193 (349)
T PRK09354 137 GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFI 193 (349)
T ss_pred CCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 678899999999886531110 0 0112334444444444434556666665
No 327
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.50 E-value=0.00032 Score=71.98 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcC
Q 009974 113 ILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~~~ 135 (521)
.+|+||||+|||+|++.+++...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHH
Confidence 88999999999999999998663
No 328
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.49 E-value=0.00043 Score=65.39 Aligned_cols=67 Identities=24% Similarity=0.356 Sum_probs=41.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCC----CEEEEeC-chhhh---------hhhhhhhHHHHHHHHHHHhcCCcEEEEcc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGV----PFFYRAG-SEFEE---------MFVGVGARRVRSLFQAAKKKAPCIIFIDE 177 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~----~~~~i~~-~~~~~---------~~~g~~~~~i~~~f~~a~~~~p~Il~IDE 177 (521)
-++++||+|+||||+++++++.... .++.+.. .++.. ...+.....+.+.+..+....|.++++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4789999999999999999887642 2222211 11110 00121122344556666667899999999
Q ss_pred c
Q 009974 178 I 178 (521)
Q Consensus 178 i 178 (521)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 7
No 329
>PRK14974 cell division protein FtsY; Provisional
Probab=97.49 E-value=0.0015 Score=66.62 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 144 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~ 144 (521)
.|.-++|+||||+||||++..+|..+ +..+..+++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 46789999999999999888888754 4555555554
No 330
>PRK13947 shikimate kinase; Provisional
Probab=97.46 E-value=0.00012 Score=67.20 Aligned_cols=31 Identities=35% Similarity=0.465 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 142 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~ 142 (521)
+|+|.|+||||||++++.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999997644
No 331
>PRK00625 shikimate kinase; Provisional
Probab=97.44 E-value=0.00013 Score=67.34 Aligned_cols=31 Identities=42% Similarity=0.626 Sum_probs=29.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 142 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~ 142 (521)
+|+|+|+||+|||++++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998765
No 332
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.44 E-value=0.00077 Score=65.89 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGV 136 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~ 136 (521)
.-++|.||+|+|||++++.+++....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 45999999999999999999987754
No 333
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.43 E-value=0.00089 Score=63.21 Aligned_cols=70 Identities=26% Similarity=0.356 Sum_probs=45.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC--------CCEEEEeCc-hhhhhhhhhh-------------hHHHHHHHHHHHhcC
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAG--------VPFFYRAGS-EFEEMFVGVG-------------ARRVRSLFQAAKKKA 169 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~--------~~~~~i~~~-~~~~~~~g~~-------------~~~i~~~f~~a~~~~ 169 (521)
+.|+.|||||||||+.|-+|+-+. ..+..++-+ ++.....|.. .-+-..+....+.+.
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~ 218 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMS 218 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcC
Confidence 689999999999999999998552 233444332 2222111111 112234566677889
Q ss_pred CcEEEEcccccc
Q 009974 170 PCIIFIDEIDAV 181 (521)
Q Consensus 170 p~Il~IDEiD~l 181 (521)
|.|+++|||...
T Consensus 219 PEViIvDEIGt~ 230 (308)
T COG3854 219 PEVIIVDEIGTE 230 (308)
T ss_pred CcEEEEeccccH
Confidence 999999998754
No 334
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.42 E-value=0.001 Score=65.17 Aligned_cols=35 Identities=29% Similarity=0.504 Sum_probs=28.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhh
Q 009974 113 ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE 147 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~ 147 (521)
|+|+|+||+||||+|+.+++.+ +.+++.++...+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr 39 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIR 39 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHH
Confidence 7899999999999999999877 5677777665443
No 335
>PRK13948 shikimate kinase; Provisional
Probab=97.42 E-value=0.00033 Score=65.19 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=34.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhh
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVG 152 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g 152 (521)
++|..|+|.|++|+|||++++.+|+.++.+|+..+ .+.....|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 45688999999999999999999999999998544 34443333
No 336
>PRK03839 putative kinase; Provisional
Probab=97.40 E-value=0.00013 Score=67.65 Aligned_cols=31 Identities=35% Similarity=0.550 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 142 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~ 142 (521)
.|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999987644
No 337
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.0031 Score=60.45 Aligned_cols=136 Identities=13% Similarity=0.082 Sum_probs=94.2
Q ss_pred CCCceEEEEcCCC-CcHHHHHHHHHHhcCC---------CEEEEeCchhhhh-hhhhhhHHHHHHHHHHH----hcCCcE
Q 009974 108 KLPKGILLTGAPG-TGKTLLAKAIAGEAGV---------PFFYRAGSEFEEM-FVGVGARRVRSLFQAAK----KKAPCI 172 (521)
Q Consensus 108 ~~p~~vLL~GppG-tGKT~la~alA~~~~~---------~~~~i~~~~~~~~-~~g~~~~~i~~~f~~a~----~~~p~I 172 (521)
+.....||.|..+ +||..++.-++..+.. .++.+....-... -..-+...+|++-+.+. .+...|
T Consensus 13 kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 13 KLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred cchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEE
Confidence 3446899999998 9999998888776532 2333322110000 00112455666555443 234569
Q ss_pred EEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHH
Q 009974 173 IFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEIL 252 (521)
Q Consensus 173 l~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il 252 (521)
++|+++|.+ .....|.||..++. +..++++|..|+.+..+.|.+++ |+ ..+.++.|+...-.+..
T Consensus 93 iII~~ae~m----------t~~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~e~~ 157 (263)
T PRK06581 93 AIIYSAELM----------NLNAANSCLKILED--APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAYNELY 157 (263)
T ss_pred EEEechHHh----------CHHHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHHHHH
Confidence 999999999 45788899999995 55667778888888999999988 87 58889999988888877
Q ss_pred HHHhcc
Q 009974 253 ELYLQD 258 (521)
Q Consensus 253 ~~~l~~ 258 (521)
..++..
T Consensus 158 ~~~~~p 163 (263)
T PRK06581 158 SQFIQP 163 (263)
T ss_pred HHhccc
Confidence 777654
No 338
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.00013 Score=64.14 Aligned_cols=31 Identities=42% Similarity=0.751 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 142 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~ 142 (521)
+||++|-||||||+++..+|...+.+++.++
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 7999999999999999999999999988754
No 339
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.39 E-value=0.00043 Score=63.09 Aligned_cols=32 Identities=31% Similarity=0.554 Sum_probs=29.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 142 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i~ 142 (521)
++|+|.|++|+||||+.+++|+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 47999999999999999999999999998654
No 340
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.39 E-value=0.0014 Score=64.65 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=29.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEEeCc
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAGS 144 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~---~~~~~~~i~~~ 144 (521)
|.+....++++||||||||+++..++.+ .|.+.++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 4445567899999999999999988664 35677777654
No 341
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.38 E-value=0.00093 Score=61.04 Aligned_cols=106 Identities=17% Similarity=0.173 Sum_probs=59.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEEeCchhh--------hhhh-----hhhhHHHHHHHHHHHhcCCcE
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSEFE--------EMFV-----GVGARRVRSLFQAAKKKAPCI 172 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~~~--~~~~i~~~~~~--------~~~~-----g~~~~~i~~~f~~a~~~~p~I 172 (521)
.+...+.|.||+|+|||+|.+.++..... --+.++..++. .... =.+.++.+-.+..+-...|.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARL 103 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCE
Confidence 34457889999999999999999986421 11222221111 0000 011234455666777788999
Q ss_pred EEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCC
Q 009974 173 IFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 223 (521)
Q Consensus 173 l~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ 223 (521)
+++||-..- .+......+..++..+. .+ +..+|.+|++++.
T Consensus 104 lllDEP~~~------LD~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~ 144 (163)
T cd03216 104 LILDEPTAA------LTPAEVERLFKVIRRLR---AQ-GVAVIFISHRLDE 144 (163)
T ss_pred EEEECCCcC------CCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHH
Confidence 999995432 12233444555554443 22 3455556665543
No 342
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.37 E-value=0.00037 Score=69.12 Aligned_cols=99 Identities=21% Similarity=0.271 Sum_probs=60.0
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC---EEEEe-Cchhh
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP---FFYRA-GSEFE 147 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~---~~~i~-~~~~~ 147 (521)
...+++++.-.....+.+.+++..... ...+++++||+|+||||+++++....... ++.+. ..++.
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~----------~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVR----------GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHH----------TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred ccccHhhccCchhhHHHHHHHHhhccc----------cceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 445788887776666666666554211 12489999999999999999999876433 33332 11221
Q ss_pred hh------h-hhhhhHHHHHHHHHHHhcCCcEEEEccccc
Q 009974 148 EM------F-VGVGARRVRSLFQAAKKKAPCIIFIDEIDA 180 (521)
Q Consensus 148 ~~------~-~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~ 180 (521)
-. + .........+++..+....|.+++++|+..
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 169 LPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp -SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred ecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 10 0 011233456777778788899999999854
No 343
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.37 E-value=0.0022 Score=67.67 Aligned_cols=39 Identities=31% Similarity=0.407 Sum_probs=31.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchh
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 146 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~ 146 (521)
..|..++++|++|+||||++..+|..+ +..+..+++..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 457889999999999999999998866 556666666443
No 344
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.37 E-value=0.00017 Score=64.80 Aligned_cols=31 Identities=35% Similarity=0.600 Sum_probs=27.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 142 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~ 142 (521)
+|+|+||||+|||++++.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999988544
No 345
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.36 E-value=0.0011 Score=65.72 Aligned_cols=39 Identities=28% Similarity=0.249 Sum_probs=29.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCc
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGS 144 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~----~~~~~~i~~~ 144 (521)
|.....-++|.||||+|||+++..++..+ +.++++++..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 34444578999999999999999887653 6677777653
No 346
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.34 E-value=0.0002 Score=72.08 Aligned_cols=69 Identities=28% Similarity=0.380 Sum_probs=44.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeC-chhh-------hhhhhhhhHHHHHHHHHHHhcCCcEEEEcc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAG-SEFE-------EMFVGVGARRVRSLFQAAKKKAPCIIFIDE 177 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~-----~~~~~~i~~-~~~~-------~~~~g~~~~~i~~~f~~a~~~~p~Il~IDE 177 (521)
++++++||+|+||||+++++.+.. +..++.+.- .++. ..........+..++..+....|..|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 489999999999999999999875 233333321 1111 000111112456777777778889999888
Q ss_pred cc
Q 009974 178 ID 179 (521)
Q Consensus 178 iD 179 (521)
+-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 74
No 347
>PRK13949 shikimate kinase; Provisional
Probab=97.34 E-value=0.00019 Score=66.06 Aligned_cols=31 Identities=45% Similarity=0.618 Sum_probs=29.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 142 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~ 142 (521)
.|+|+||||+|||++++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 6999999999999999999999999988765
No 348
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.34 E-value=0.0017 Score=61.22 Aligned_cols=108 Identities=22% Similarity=0.314 Sum_probs=55.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhh-------hh---hh----------hhhHHHHHHHHHHH
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE-------MF---VG----------VGARRVRSLFQAAK 166 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~-------~~---~g----------~~~~~i~~~f~~a~ 166 (521)
|+-++|.||+|+||||.+-.+|..+ +..+--+++..+.- .| .+ ......++.++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 6679999999999999988888754 44444444433211 11 11 01123344555555
Q ss_pred hcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCC
Q 009974 167 KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILD 225 (521)
Q Consensus 167 ~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld 225 (521)
...-.+|+||-..... .....+.++-..++...+..-++|+.++...+.++
T Consensus 81 ~~~~D~vlIDT~Gr~~--------~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSP--------RDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SSSS--------THHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCcch--------hhHHHHHHHHHHhhhcCCccceEEEecccChHHHH
Confidence 5444689988754331 12233333333333323334455555555444443
No 349
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.32 E-value=0.00019 Score=64.10 Aligned_cols=28 Identities=36% Similarity=0.686 Sum_probs=26.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 113 ILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
|-+.|||||||||+++.+|..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999999986
No 350
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.32 E-value=0.0018 Score=61.89 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAG 132 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~ 132 (521)
++.++|+||.|+|||++.+.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 36799999999999999999983
No 351
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.31 E-value=0.00024 Score=65.69 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=31.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 147 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 147 (521)
+-++|.||||+||||+|+.++..++.+++.++...+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~ 39 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFI 39 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHH
Confidence 4689999999999999999999998888776655443
No 352
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.30 E-value=0.0024 Score=74.30 Aligned_cols=157 Identities=18% Similarity=0.259 Sum_probs=83.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh---hhh----h--------hh---h------------hHHHHH
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE---EMF----V--------GV---G------------ARRVRS 160 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~---~~~----~--------g~---~------------~~~i~~ 160 (521)
+-++++||+|.|||+++...+...+ ++..++...-. ..| . +. . ...+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 3699999999999999999988776 66655542110 000 0 00 0 011222
Q ss_pred HHHHHHh-cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCc-cccCCCccceEE
Q 009974 161 LFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDP-ALTRPGRFDRHI 238 (521)
Q Consensus 161 ~f~~a~~-~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~-al~r~gRf~~~i 238 (521)
++..... ..|.+|+|||++.+.. ......+..++..+ ..++.+|.++.....++- .+.. -+..+
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~~------~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~---~~~~~ 177 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLITN------PEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRV---RDQLL 177 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCCC------hHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHh---cCcce
Confidence 3333332 5689999999998821 11223333444322 233333334543222211 1111 11233
Q ss_pred ecC----CCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHH
Q 009974 239 VVP----NPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANL 285 (521)
Q Consensus 239 ~~~----~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~l 285 (521)
.+. ..+.++-.+++...+... + +..+...+.+.|.|. +.-+.-+
T Consensus 178 ~l~~~~l~f~~~e~~~ll~~~~~~~-~-~~~~~~~l~~~t~Gw-p~~l~l~ 225 (903)
T PRK04841 178 EIGSQQLAFDHQEAQQFFDQRLSSP-I-EAAESSRLCDDVEGW-ATALQLI 225 (903)
T ss_pred ecCHHhCCCCHHHHHHHHHhccCCC-C-CHHHHHHHHHHhCCh-HHHHHHH
Confidence 444 568888888887665432 2 344567788888874 4444433
No 353
>PLN02200 adenylate kinase family protein
Probab=97.29 E-value=0.00035 Score=67.77 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=33.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhh
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 149 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 149 (521)
+.+.|.-+++.||||+||||+|+.+|+.+|.+ .++++++...
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~ 80 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRR 80 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHH
Confidence 34556779999999999999999999999865 4666666543
No 354
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.29 E-value=0.00023 Score=66.15 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=27.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 113 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
|+++||||+||||+|+.+|...+.+ .++.+++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EEECChHHH
Confidence 7899999999999999999999865 455555544
No 355
>PRK14532 adenylate kinase; Provisional
Probab=97.27 E-value=0.00025 Score=66.35 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=29.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 149 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 149 (521)
.++|.||||+||||+++.+|+..+.+++ +..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 4899999999999999999999987665 45555443
No 356
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.27 E-value=0.0027 Score=61.15 Aligned_cols=40 Identities=28% Similarity=0.272 Sum_probs=30.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCch
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 145 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~ 145 (521)
|.+....+++.|+||+|||+++..++... +.+.++++..+
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 44445678999999999999999887543 67777777643
No 357
>PRK14531 adenylate kinase; Provisional
Probab=97.26 E-value=0.0003 Score=65.63 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=29.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 147 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 147 (521)
+.++++||||+||||+++.+|...|.+++. +.++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 359999999999999999999999877654 44444
No 358
>PRK06217 hypothetical protein; Validated
Probab=97.25 E-value=0.00028 Score=65.80 Aligned_cols=31 Identities=35% Similarity=0.552 Sum_probs=28.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 142 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~ 142 (521)
.|+|.|+||+||||++++|++.++.|++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987654
No 359
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.25 E-value=0.0021 Score=59.52 Aligned_cols=68 Identities=25% Similarity=0.199 Sum_probs=41.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEEeCchh----hhhhhhhhhHHHHHHHHHHHhcCCcEEEEcccc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSEF----EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEID 179 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~--~~~~i~~~~~----~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD 179 (521)
.-+.|.||+|+|||||++.++..... --+.++...+ ...... +.++.+-.+..+-...|.++++||--
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LS-gGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLS-GGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCC-HHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 46889999999999999999986421 0112221110 000011 12334445566666789999999964
No 360
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.0069 Score=62.50 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 144 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~ 144 (521)
.|+.++|.||+|+||||++..||..+ +..+..+++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 35789999999999999999999765 3455555553
No 361
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.24 E-value=0.0016 Score=58.18 Aligned_cols=70 Identities=26% Similarity=0.354 Sum_probs=41.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCC--EEEEeCc---hhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccc
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAGVP--FFYRAGS---EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDA 180 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~~~--~~~i~~~---~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~ 180 (521)
....+.|.||+|+|||||++++++..... -+.++.. .+...+. +.+..+-.+..+-...|.++++||-..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS--~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLS--GGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCC--HHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 34568899999999999999999865210 1111110 0000011 122333445666667889999999543
No 362
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.23 E-value=0.00028 Score=62.74 Aligned_cols=30 Identities=33% Similarity=0.687 Sum_probs=28.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009974 113 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 142 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~~~~~~~~i~ 142 (521)
|.+.|+||||||++|+.+|..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998765
No 363
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.23 E-value=0.0035 Score=57.56 Aligned_cols=70 Identities=26% Similarity=0.314 Sum_probs=44.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhh-hh----------------hhhhHHHHHHHHHHHhcCCcEEEE
Q 009974 113 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FV----------------GVGARRVRSLFQAAKKKAPCIIFI 175 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~-~~----------------g~~~~~i~~~f~~a~~~~p~Il~I 175 (521)
+|++|+||+|||++|..++...+.+.+++....-.+. +. .+....+.+.+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 6899999999999999999887778777755432111 00 011122333332221 4669999
Q ss_pred ccccccccC
Q 009974 176 DEIDAVGST 184 (521)
Q Consensus 176 DEiD~l~~~ 184 (521)
|-+..+..+
T Consensus 80 Dclt~~~~n 88 (169)
T cd00544 80 DCLTLWVTN 88 (169)
T ss_pred EcHhHHHHH
Confidence 998876543
No 364
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.22 E-value=0.00037 Score=65.14 Aligned_cols=69 Identities=26% Similarity=0.381 Sum_probs=42.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEEeCc-hhhh---h----------hhhhhhHHHHHHHHHHHhcCCcEEE
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGS-EFEE---M----------FVGVGARRVRSLFQAAKKKAPCIIF 174 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~--~~~~~i~~~-~~~~---~----------~~g~~~~~i~~~f~~a~~~~p~Il~ 174 (521)
..++|.||+|+||||++++++.... ...+.+... ++.. . ..+.......+++..+....|.+++
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~ 105 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRII 105 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEE
Confidence 4799999999999999999998653 122222111 1100 0 0011123355666667777899999
Q ss_pred Ecccc
Q 009974 175 IDEID 179 (521)
Q Consensus 175 IDEiD 179 (521)
++|+-
T Consensus 106 igEir 110 (186)
T cd01130 106 VGEVR 110 (186)
T ss_pred EEccC
Confidence 99974
No 365
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.20 E-value=0.0015 Score=58.78 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHh
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~ 133 (521)
+...++|+||+|||||+|.+++|.-
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhc
Confidence 3346999999999999999999873
No 366
>PRK06547 hypothetical protein; Provisional
Probab=97.20 E-value=0.00037 Score=64.25 Aligned_cols=35 Identities=31% Similarity=0.407 Sum_probs=29.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 142 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~ 142 (521)
..+.-|+++|+||+|||++++.+++.++.+++..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 34567899999999999999999999988877543
No 367
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.20 E-value=0.0014 Score=58.92 Aligned_cols=35 Identities=34% Similarity=0.651 Sum_probs=28.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhh
Q 009974 113 ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE 147 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~ 147 (521)
++++|+||+|||++|+.++..+ +.+.+.++...+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 6899999999999999999987 6667777654443
No 368
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.20 E-value=0.00071 Score=63.47 Aligned_cols=22 Identities=27% Similarity=0.690 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 009974 111 KGILLTGAPGTGKTLLAKAIAG 132 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~ 132 (521)
.-+.++||+|+||||+.|++-.
T Consensus 29 evv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4589999999999999999965
No 369
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.19 E-value=0.0033 Score=59.31 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFF 139 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~ 139 (521)
|.-++++|+||+|||++|+.+|.+++.+++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~ 32 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDIV 32 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 456899999999999999999999987653
No 370
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.19 E-value=0.00033 Score=62.83 Aligned_cols=28 Identities=39% Similarity=0.752 Sum_probs=25.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 113 ILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
++|+|+||+||||+|+.++..++.+++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876653
No 371
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.19 E-value=0.0015 Score=66.46 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=62.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCchh-h-hhh------hhhhh-------------
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF-E-EMF------VGVGA------------- 155 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~---------~~~~~~i~~~~~-~-~~~------~g~~~------------- 155 (521)
|.+...-++++||||||||+++..+|..+ +...++++..+- . ... .|...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 34455668899999999999999998653 346777776541 1 000 00000
Q ss_pred ------HHHHHHHHHHHh-cCCcEEEEccccccccCCcCCCc---ccHHHHHHHHHhhhcCccCCceEEEeecC
Q 009974 156 ------RRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEG---HTKKTLHQLLVEMDGFEQNEGIILMAATN 219 (521)
Q Consensus 156 ------~~i~~~f~~a~~-~~p~Il~IDEiD~l~~~~~~~~~---~~~~~l~~ll~~l~~~~~~~~vivI~ttn 219 (521)
..+..+...... ..+.+|+||-+-.+....-...+ ..++.+.+++..+..+....++.+|.|..
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 011122222233 45679999999887543111111 11333555555555444456666666654
No 372
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.18 E-value=0.00069 Score=69.69 Aligned_cols=69 Identities=23% Similarity=0.327 Sum_probs=44.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC----CEEEEeC-chhh---------hhhhhhhhHHHHHHHHHHHhcCCcEEEEc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGV----PFFYRAG-SEFE---------EMFVGVGARRVRSLFQAAKKKAPCIIFID 176 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~----~~~~i~~-~~~~---------~~~~g~~~~~i~~~f~~a~~~~p~Il~ID 176 (521)
..++++||+|+||||+.+++.+.... .++.+.- .++. ....|.........++.+-...|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 36899999999999999999886642 2333221 1111 00112212234556666777889999999
Q ss_pred ccc
Q 009974 177 EID 179 (521)
Q Consensus 177 EiD 179 (521)
|+.
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 984
No 373
>PLN02674 adenylate kinase
Probab=97.18 E-value=0.00075 Score=65.57 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=30.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhh
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 149 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 149 (521)
+..++|.||||+||||+++.+|+..+.+.+ +..++...
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~hi--s~GdllR~ 68 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLRA 68 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEE--chhHHHHH
Confidence 457999999999999999999999986554 45555443
No 374
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.17 E-value=0.0048 Score=59.69 Aligned_cols=133 Identities=16% Similarity=0.237 Sum_probs=74.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEEeCchhhhhh--------hh------hhh-------HHHHHHHHHH
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSEFEEMF--------VG------VGA-------RRVRSLFQAA 165 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~~--~~~~i~~~~~~~~~--------~g------~~~-------~~i~~~f~~a 165 (521)
.|-.+.+.|++|||||+++..+...... +.+.+-+......+ .. ... ..+.+.....
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 4457999999999999999999876532 22222111111100 00 000 1111122211
Q ss_pred Hh---cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCC
Q 009974 166 KK---KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPN 242 (521)
Q Consensus 166 ~~---~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~ 242 (521)
.. ..+++|++|++..- ...++.+.+++.. ..+-++-+|..+.....+|+.++. -.+..+-++
T Consensus 92 ~~~k~~~~~LiIlDD~~~~--------~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y~i~~~- 156 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDK--------KLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDYFIIFN- 156 (241)
T ss_pred cccCCCCCeEEEEeCCCCc--------hhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceEEEEec-
Confidence 11 23679999996321 0112344454432 234567888888888999999866 567777665
Q ss_pred CCHHHHHHHHHHHh
Q 009974 243 PDVRGRQEILELYL 256 (521)
Q Consensus 243 P~~~~r~~il~~~l 256 (521)
-+..+...|++.+.
T Consensus 157 ~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 157 NSKRDLENIYRNMN 170 (241)
T ss_pred CcHHHHHHHHHhcc
Confidence 46666666666543
No 375
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.16 E-value=0.00047 Score=66.58 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=28.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 142 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~ 142 (521)
|..++|.||||+||||+|+.+|+.++++++.+.
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 445999999999999999999999998777643
No 376
>PHA02774 E1; Provisional
Probab=97.15 E-value=0.0011 Score=71.14 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=27.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEE-EeC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFY-RAG 143 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~-i~~ 143 (521)
++++|+||||||||++|.+|++.++...+. +|.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 589999999999999999999998755543 553
No 377
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.00092 Score=72.77 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=22.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHH
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAG 132 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~ 132 (521)
..++...+-|.||+|+||||+|..+-+
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~r 516 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLR 516 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 345567899999999999999999965
No 378
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.15 E-value=0.003 Score=61.51 Aligned_cols=21 Identities=33% Similarity=0.321 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 009974 113 ILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~ 133 (521)
-+|+||||+|||+|+..+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999863
No 379
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.14 E-value=0.00097 Score=68.07 Aligned_cols=69 Identities=23% Similarity=0.293 Sum_probs=44.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEEe-Cchhhh-----------hh--hhhhhHHHHHHHHHHHhcCCcEEE
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRA-GSEFEE-----------MF--VGVGARRVRSLFQAAKKKAPCIIF 174 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~--~~~~i~-~~~~~~-----------~~--~g~~~~~i~~~f~~a~~~~p~Il~ 174 (521)
++++++||+|+||||+++++...... .++.+. ..++.- .. .+...-...++++.+....|..|+
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~Ii 240 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRII 240 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEE
Confidence 58999999999999999999987642 233221 111110 00 011122356777788888899999
Q ss_pred Ecccc
Q 009974 175 IDEID 179 (521)
Q Consensus 175 IDEiD 179 (521)
+.|+-
T Consensus 241 vGEiR 245 (332)
T PRK13900 241 VGELR 245 (332)
T ss_pred EEecC
Confidence 99974
No 380
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.14 E-value=0.023 Score=57.56 Aligned_cols=126 Identities=22% Similarity=0.334 Sum_probs=64.3
Q ss_pred HHHHHHHHHh--c-CCcEEEEccccccccCCcCCCc-------ccHHHHHHHHHhhhcCcc-CCceEE--EeecCC---C
Q 009974 158 VRSLFQAAKK--K-APCIIFIDEIDAVGSTRKQWEG-------HTKKTLHQLLVEMDGFEQ-NEGIIL--MAATNL---P 221 (521)
Q Consensus 158 i~~~f~~a~~--~-~p~Il~IDEiD~l~~~~~~~~~-------~~~~~l~~ll~~l~~~~~-~~~viv--I~ttn~---~ 221 (521)
+..++++... . .|.++-||++..+.....-.+. ..-.....++..+.+-.. ..+.+| +++|.. +
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 3344444433 2 4677889999999766321111 111233344444332222 334443 454433 2
Q ss_pred C--CCCccccCCCc------cc-------------eEEecCCCCHHHHHHHHHHHhccCCCCCccc----HHHHHhcCCC
Q 009974 222 D--ILDPALTRPGR------FD-------------RHIVVPNPDVRGRQEILELYLQDKPLADDVD----VKAIARGTPG 276 (521)
Q Consensus 222 ~--~ld~al~r~gR------f~-------------~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~----l~~la~~~~g 276 (521)
. .++.++....- |. ..+.++..+.+|-..++++|....-+....+ .+.+.- +.|
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~-~s~ 300 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFL-SSN 300 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHH-hcC
Confidence 2 34444433111 11 1678899999999999999987654432111 223333 234
Q ss_pred CCHHHHHH
Q 009974 277 FNGADLAN 284 (521)
Q Consensus 277 ~s~~dl~~ 284 (521)
.+++++..
T Consensus 301 GNp~el~k 308 (309)
T PF10236_consen 301 GNPRELEK 308 (309)
T ss_pred CCHHHhcc
Confidence 56777653
No 381
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.14 E-value=0.00061 Score=63.16 Aligned_cols=33 Identities=36% Similarity=0.572 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 146 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 146 (521)
.|+|.||||+||||+|+.||+.++ +..++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhHH
Confidence 489999999999999999999954 445554444
No 382
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.14 E-value=0.0041 Score=64.82 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCch
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSE 145 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~----~~~~~~i~~~~ 145 (521)
.+.-++|.||+|+||||++..+|... |..+..+++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 34568899999999999999999754 44455555444
No 383
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.13 E-value=0.00036 Score=63.58 Aligned_cols=28 Identities=36% Similarity=0.636 Sum_probs=24.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 113 ILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
++|.||||+||||+++.+++.++.+++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4789999999999999999999876653
No 384
>PRK04328 hypothetical protein; Provisional
Probab=97.13 E-value=0.0041 Score=60.95 Aligned_cols=38 Identities=34% Similarity=0.503 Sum_probs=28.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEEeC
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAG 143 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~---~~~~~~~i~~ 143 (521)
|.+....+|++||||||||+++..++.+ .|-+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 3445567899999999999999887653 3567776665
No 385
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.13 E-value=0.00041 Score=64.97 Aligned_cols=34 Identities=35% Similarity=0.606 Sum_probs=28.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 113 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
|+|+||||+|||++++.||...+.+++. ..++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~~ 35 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLLR 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHHH
Confidence 7999999999999999999998876654 445443
No 386
>PRK13695 putative NTPase; Provisional
Probab=97.12 E-value=0.0036 Score=57.73 Aligned_cols=23 Identities=48% Similarity=0.567 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~ 134 (521)
.++|+|+||+||||+++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999987764
No 387
>PRK13946 shikimate kinase; Provisional
Probab=97.12 E-value=0.00044 Score=64.56 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=30.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 142 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~ 142 (521)
.++.|+|.|+||||||++++.+|+.+|.||+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 3468999999999999999999999999988655
No 388
>PRK14530 adenylate kinase; Provisional
Probab=97.12 E-value=0.00046 Score=66.09 Aligned_cols=30 Identities=43% Similarity=0.593 Sum_probs=26.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
.|+|.||||+||||+++.||+.++.+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 599999999999999999999998776643
No 389
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.11 E-value=0.0011 Score=74.05 Aligned_cols=69 Identities=22% Similarity=0.301 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccc
Q 009974 156 RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFD 235 (521)
Q Consensus 156 ~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~ 235 (521)
++.+-.+.+|--.+|.||++||.-+- .+...++.+.+-+..+. .+..+|..|+++..+. ++|
T Consensus 614 QrQrlalARaLl~~P~ILlLDEaTSa------LD~~sE~~I~~~L~~~~-----~~~T~I~IaHRl~ti~-------~ad 675 (709)
T COG2274 614 QRQRLALARALLSKPKILLLDEATSA------LDPETEAIILQNLLQIL-----QGRTVIIIAHRLSTIR-------SAD 675 (709)
T ss_pred HHHHHHHHHHhccCCCEEEEeCcccc------cCHhHHHHHHHHHHHHh-----cCCeEEEEEccchHhh-------hcc
Confidence 45555666677788999999996433 23344555555444443 1234555667665432 466
Q ss_pred eEEecCC
Q 009974 236 RHIVVPN 242 (521)
Q Consensus 236 ~~i~~~~ 242 (521)
+.+.++.
T Consensus 676 rIiVl~~ 682 (709)
T COG2274 676 RIIVLDQ 682 (709)
T ss_pred EEEEccC
Confidence 6665543
No 390
>PRK08233 hypothetical protein; Provisional
Probab=97.11 E-value=0.0016 Score=60.23 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=26.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC-CCEEEEeC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAG-VPFFYRAG 143 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~-~~~~~i~~ 143 (521)
.-|.+.|+||+||||+|+.|+..++ .+++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 3578899999999999999999885 44554443
No 391
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.10 E-value=0.0022 Score=64.91 Aligned_cols=112 Identities=16% Similarity=0.156 Sum_probs=61.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCch-hhhh-h------hhh----------------
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSE-FEEM-F------VGV---------------- 153 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~---------~~~~~~i~~~~-~~~~-~------~g~---------------- 153 (521)
.+...-+.|+||||+|||+++..+|-.. +...++++... |... . .+.
T Consensus 93 i~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 93 IESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred CcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCCC
Confidence 3344557799999999999998887422 45677777644 1100 0 000
Q ss_pred hh---HHHHHHHHHHHhcCCcEEEEccccccccCCcCCCc---ccHHHHHHHHHhhhcCccCCceEEEeec
Q 009974 154 GA---RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG---HTKKTLHQLLVEMDGFEQNEGIILMAAT 218 (521)
Q Consensus 154 ~~---~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~---~~~~~l~~ll~~l~~~~~~~~vivI~tt 218 (521)
.+ ..+..+-.......+.+|+||-+-.+....-...+ ..++.+.+++..|..+....++.||.+.
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~~g~~~~r~~~l~~~~~~L~~la~~~~vavvitN 243 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEEFNVAVFVTN 243 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccCccchHHHHHHHHHHHHHHHHHHHHcCcEEEEEC
Confidence 00 11122222233456789999999987653211111 1223455666555555455666666553
No 392
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.10 E-value=0.00055 Score=63.18 Aligned_cols=34 Identities=24% Similarity=0.530 Sum_probs=30.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 143 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~ 143 (521)
++.|+|.||+|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3479999999999999999999999999887654
No 393
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.10 E-value=0.004 Score=60.06 Aligned_cols=38 Identities=34% Similarity=0.452 Sum_probs=28.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEEeC
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAG 143 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~---~~~~~~~i~~ 143 (521)
|.+....++++||||+|||+++..++.+ .+.+.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4455567999999999999999987643 2556666664
No 394
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.10 E-value=0.002 Score=65.40 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=30.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCch
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSE 145 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~---------~~~~~~i~~~~ 145 (521)
.+...-++++||||+|||+++-.+|..+ +.+.++++..+
T Consensus 92 i~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 92 IETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 3445567899999999999999998663 33778887655
No 395
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.08 E-value=0.00057 Score=62.78 Aligned_cols=32 Identities=34% Similarity=0.507 Sum_probs=28.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 142 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i~ 142 (521)
..++|+|+||+|||++++.+|..++.|++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 36899999999999999999999999988543
No 396
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.08 E-value=0.0025 Score=59.57 Aligned_cols=73 Identities=25% Similarity=0.313 Sum_probs=41.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc-------------CCCEEEEeCchhh----hhhh---h-h-----------------
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA-------------GVPFFYRAGSEFE----EMFV---G-V----------------- 153 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~-------------~~~~~~i~~~~~~----~~~~---g-~----------------- 153 (521)
-.+|+||||+|||+++..++... +.++++++...-. ..+. + .
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 48899999999999999997744 2367777654321 1100 0 0
Q ss_pred -----------hhHHHHHHHHHHHh-cCCcEEEEccccccccC
Q 009974 154 -----------GARRVRSLFQAAKK-KAPCIIFIDEIDAVGST 184 (521)
Q Consensus 154 -----------~~~~i~~~f~~a~~-~~p~Il~IDEiD~l~~~ 184 (521)
....+..+.+.+.. ..|.+|+||-+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 01123345555555 56889999999999765
No 397
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.08 E-value=0.0033 Score=67.80 Aligned_cols=77 Identities=29% Similarity=0.269 Sum_probs=52.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhh------hh----------------------h
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV------GV----------------------G 154 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~------g~----------------------~ 154 (521)
|......+|+.||||+|||+|+..++.+. |-+.++++..+-.+.+. |. .
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 33444569999999999999999998754 56777777654322111 00 0
Q ss_pred hHHHHHHHHHHHhcCCcEEEEccccccc
Q 009974 155 ARRVRSLFQAAKKKAPCIIFIDEIDAVG 182 (521)
Q Consensus 155 ~~~i~~~f~~a~~~~p~Il~IDEiD~l~ 182 (521)
...+..+.+......|.+|+||-+..+.
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 2345556666667788999999998874
No 398
>PRK06696 uridine kinase; Validated
Probab=97.08 E-value=0.0013 Score=63.42 Aligned_cols=40 Identities=28% Similarity=0.476 Sum_probs=33.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhh
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE 148 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~ 148 (521)
.|.-|.+.|+||+||||+|+.|+..+ |.+++.++..+|..
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 45578999999999999999999988 67888877777653
No 399
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.07 E-value=0.0076 Score=55.41 Aligned_cols=35 Identities=34% Similarity=0.396 Sum_probs=28.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 146 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~ 146 (521)
-++++||||+|||++++.++..+ +..+..+++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 37899999999999999998765 667777776543
No 400
>PTZ00494 tuzin-like protein; Provisional
Probab=97.07 E-value=0.073 Score=55.40 Aligned_cols=204 Identities=16% Similarity=0.152 Sum_probs=112.6
Q ss_pred cccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhh--------
Q 009974 78 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-------- 149 (521)
Q Consensus 78 di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~-------- 149 (521)
..+..+...+.+++++.+ +....|+-+.|+|..||||++++|.--+.-+.|.+.++.-.-.+.
T Consensus 372 ~~V~R~~eE~~vRqvL~q---------ld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg~EDtLrsVVKAL 442 (664)
T PTZ00494 372 FEVRREDEEALVRSVLTQ---------MAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGGTEDTLRSVVRAL 442 (664)
T ss_pred cccchhhHHHHHHHHHhh---------ccCCCCcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecCCcchHHHHHHHh
Confidence 346666666666666654 345678899999999999999999999999999887764221111
Q ss_pred ------hhhhhhHHHHHHHHHHHh---cCCcEEE--EccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeec
Q 009974 150 ------FVGVGARRVRSLFQAAKK---KAPCIIF--IDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT 218 (521)
Q Consensus 150 ------~~g~~~~~i~~~f~~a~~---~~p~Il~--IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~tt 218 (521)
.-|....-+.+.+..|+. +.+-+|+ |-|-+.| .++.|+....--. ..-..+++=..-
T Consensus 443 gV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL-----------~RVYnE~vaLacD-rRlCHvv~EVpl 510 (664)
T PTZ00494 443 GVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDL-----------GRVYGEVVSLVSD-CQACHIVLAVPM 510 (664)
T ss_pred CCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcH-----------HHHHHHHHHHHcc-chhheeeeechH
Confidence 112333556677777765 2233444 4453333 4455554433211 111222221111
Q ss_pred CCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 009974 219 NLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGG 298 (521)
Q Consensus 219 n~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~ 298 (521)
... .+....+. |+| ...+|..+.++-.+..++.+.. .++..+.. +-|-+..|+..++- +..-.+-..
T Consensus 511 ESL-T~~n~~LP--RLD-Fy~VPnFSr~QAf~YtqH~lDa------l~l~~Fve-vvGTnSnDlDEL~A--Av~qRrvs~ 577 (664)
T PTZ00494 511 KAL-TPLNVSSR--RLD-FYCIPPFSRRQAFAYAEHTLDA------LDLVCFVE-VVGTRSSDVDELCA--ALRQRGVDP 577 (664)
T ss_pred hhh-chhhccCc--cce-eEecCCcCHHHHHHHHhcccch------hhhhhhhh-hhcCCcccHHHHHH--HHHHcCCCH
Confidence 111 11122233 776 5677888888888888776643 33333333 34567778888873 221111111
Q ss_pred CccCHHHHHHHHHHHhc
Q 009974 299 EKLTATELEFAKDRILM 315 (521)
Q Consensus 299 ~~it~~~~~~a~~~~~~ 315 (521)
..-|...+..|.++.-.
T Consensus 578 ~~YTnqkLlkAMRqLqa 594 (664)
T PTZ00494 578 VTYTSLMLARAMRRLQA 594 (664)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 23345566667666543
No 401
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.07 E-value=0.0029 Score=62.21 Aligned_cols=111 Identities=21% Similarity=0.282 Sum_probs=65.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCC----CEEEE---------eCchhh-hhhhhhhhHHHHHHHHHHHhcCCcEEEEcc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGV----PFFYR---------AGSEFE-EMFVGVGARRVRSLFQAAKKKAPCIIFIDE 177 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~----~~~~i---------~~~~~~-~~~~g~~~~~i~~~f~~a~~~~p~Il~IDE 177 (521)
=||++||.|+||||...++-...|. ..+.+ |-..+. ..-+|.........++.|-...|.||++-|
T Consensus 127 LILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvGE 206 (353)
T COG2805 127 LILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVGE 206 (353)
T ss_pred eEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEec
Confidence 3778899999999999999887753 22322 222222 223444445555666667777899999988
Q ss_pred ccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHH
Q 009974 178 IDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVR 246 (521)
Q Consensus 178 iD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~ 246 (521)
+-.+ .++..-|..- ..+.+|++|-...+ +... .++.+.+-++..+
T Consensus 207 mRD~------------ETi~~ALtAA-----ETGHLV~~TLHT~s----A~~t---i~RiidvFp~~ek 251 (353)
T COG2805 207 MRDL------------ETIRLALTAA-----ETGHLVFGTLHTNS----AAKT---IDRIIDVFPAEEK 251 (353)
T ss_pred cccH------------HHHHHHHHHH-----hcCCEEEEeccccc----HHHH---HHHHHHhCChhhh
Confidence 7543 4454444433 34568888744332 2222 4455555555443
No 402
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.06 E-value=0.0011 Score=67.47 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCC
Q 009974 158 VRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 222 (521)
Q Consensus 158 i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~ 222 (521)
.|-.+..|-...|.+|++||=-+- -..+.-.++-.++..+....++.+|.-|.+.+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSa---------LD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe 198 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSA---------LDAKLREQMRKELKELQRELGITFVYVTHDQE 198 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccc---------hhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 344556666678999999993221 12223334444455444566778888887654
No 403
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.05 E-value=0.0039 Score=57.70 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=20.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAG 132 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~ 132 (521)
...-+.|.||+|+|||||.+++..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 344688999999999999999974
No 404
>PRK10867 signal recognition particle protein; Provisional
Probab=97.05 E-value=0.013 Score=61.93 Aligned_cols=75 Identities=20% Similarity=0.290 Sum_probs=47.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCchhhhhh----------hh----------hhhHHHHHHH
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEMF----------VG----------VGARRVRSLF 162 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~----~~~~~~i~~~~~~~~~----------~g----------~~~~~i~~~f 162 (521)
...|.-++++||+|+||||++..+|..+ |..+..+++..+.... .+ ..........
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 3457889999999999999888887643 6667777765432210 00 1122233445
Q ss_pred HHHHhcCCcEEEEcccccc
Q 009974 163 QAAKKKAPCIIFIDEIDAV 181 (521)
Q Consensus 163 ~~a~~~~p~Il~IDEiD~l 181 (521)
..++.....+|+||=...+
T Consensus 177 ~~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHHhcCCCEEEEeCCCCc
Confidence 5555555678888876554
No 405
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.04 E-value=0.0025 Score=68.98 Aligned_cols=27 Identities=41% Similarity=0.607 Sum_probs=23.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHh
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~ 133 (521)
.++...+|+.||+|||||++.|++|+-
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 445567999999999999999999984
No 406
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.04 E-value=0.002 Score=65.34 Aligned_cols=35 Identities=34% Similarity=0.551 Sum_probs=31.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
..++..|.|+|+||||||++++.+|..+|++|+..
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 34556899999999999999999999999999943
No 407
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.03 E-value=0.0017 Score=64.18 Aligned_cols=95 Identities=19% Similarity=0.227 Sum_probs=56.5
Q ss_pred cCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEEeC-chhhh
Q 009974 73 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAG-SEFEE 148 (521)
Q Consensus 73 ~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~---~~~~~i~~-~~~~~ 148 (521)
..+++++.-.++..+.+++++. .+ ...++++||+|+||||+++++..... ..++.+.- .++.-
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~---~~----------~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLE---KP----------HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh---cC----------CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 3467777655555555544442 11 12589999999999999999977663 23444321 11110
Q ss_pred ------hhhhhhhHHHHHHHHHHHhcCCcEEEEccccc
Q 009974 149 ------MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDA 180 (521)
Q Consensus 149 ------~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~ 180 (521)
................+....|.+++++|+..
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 00011112345666677778899999999853
No 408
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.03 E-value=0.0031 Score=64.51 Aligned_cols=110 Identities=14% Similarity=0.121 Sum_probs=60.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCch-hhhh----h---hhhh----------------h
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSE-FEEM----F---VGVG----------------A 155 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~---------~~~~~~i~~~~-~~~~----~---~g~~----------------~ 155 (521)
...-..|+||||||||+|+..+|-.. +...++++... |... . .|.. .
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~~e 204 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTYE 204 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCCHH
Confidence 33447799999999999999887432 24667777643 1100 0 0000 0
Q ss_pred ---HHHHHHHHHHHhcCCcEEEEccccccccCCcCCC---cccHHHHHHHHHhhhcCccCCceEEEeec
Q 009974 156 ---RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE---GHTKKTLHQLLVEMDGFEQNEGIILMAAT 218 (521)
Q Consensus 156 ---~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~---~~~~~~l~~ll~~l~~~~~~~~vivI~tt 218 (521)
..+..+-.......+.+|+||-+-.+....-... ...++.+.+++..|..+....++.||.|.
T Consensus 205 ~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 205 HQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 1112222223345678999999988755321111 12234466666666555445566666553
No 409
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.03 E-value=0.00084 Score=67.99 Aligned_cols=69 Identities=22% Similarity=0.333 Sum_probs=44.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEe-Cchhhhh------hhhhhhHHHHHHHHHHHhcCCcEEEEccc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRA-GSEFEEM------FVGVGARRVRSLFQAAKKKAPCIIFIDEI 178 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~-----~~~~~~i~-~~~~~~~------~~g~~~~~i~~~f~~a~~~~p~Il~IDEi 178 (521)
.+++++|++|+||||+++++.... +..++.+. ..++.-. +.....-....++..+....|..|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 489999999999999999999875 22333332 1121100 00111223566777777788999999887
Q ss_pred c
Q 009974 179 D 179 (521)
Q Consensus 179 D 179 (521)
-
T Consensus 225 R 225 (323)
T PRK13833 225 R 225 (323)
T ss_pred C
Confidence 3
No 410
>PRK14528 adenylate kinase; Provisional
Probab=97.03 E-value=0.00064 Score=63.59 Aligned_cols=30 Identities=30% Similarity=0.556 Sum_probs=27.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
.+++.||||+|||++++.+++..+.+++.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 589999999999999999999999887653
No 411
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.02 E-value=0.0034 Score=58.56 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 009974 113 ILLTGAPGTGKTLLAKAIA 131 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA 131 (521)
++|+||.|+|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 412
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.02 E-value=0.0028 Score=73.89 Aligned_cols=134 Identities=22% Similarity=0.293 Sum_probs=88.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh--hhhhhhh----H---HHHHHHHHH-HhcCCcEEEEcccccc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE--MFVGVGA----R---RVRSLFQAA-KKKAPCIIFIDEIDAV 181 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~--~~~g~~~----~---~i~~~f~~a-~~~~p~Il~IDEiD~l 181 (521)
.+||-||..+|||++...+|++.|-.|+.++-.+-.+ .|.|... . --..++-.| +.+ .-|++||+.-.
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G--yWIVLDELNLA 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG--YWIVLDELNLA 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC--cEEEeeccccC
Confidence 4999999999999999999999999999998765422 2333211 1 112233333 333 48999998754
Q ss_pred ccCCcCCCcccHHHHHHHHHhhhc---------CccCCceEEEeecCCCC------CCCccccCCCccceEEecCCCCHH
Q 009974 182 GSTRKQWEGHTKKTLHQLLVEMDG---------FEQNEGIILMAATNLPD------ILDPALTRPGRFDRHIVVPNPDVR 246 (521)
Q Consensus 182 ~~~~~~~~~~~~~~l~~ll~~l~~---------~~~~~~vivI~ttn~~~------~ld~al~r~gRf~~~i~~~~P~~~ 246 (521)
.. ..-..+|.||..-.. +.+++.+.++||-|.|. .|..|++. || ..++|..-..+
T Consensus 968 pT-------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~hFddiped 1037 (4600)
T COG5271 968 PT-------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMHFDDIPED 1037 (4600)
T ss_pred cH-------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-HhhhcccCcHH
Confidence 21 234455555533211 23456788889989874 46778877 88 46677766778
Q ss_pred HHHHHHHHHhc
Q 009974 247 GRQEILELYLQ 257 (521)
Q Consensus 247 ~r~~il~~~l~ 257 (521)
+...|++..++
T Consensus 1038 Ele~ILh~rc~ 1048 (4600)
T COG5271 1038 ELEEILHGRCE 1048 (4600)
T ss_pred HHHHHHhccCc
Confidence 88888876654
No 413
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.02 E-value=0.0052 Score=60.77 Aligned_cols=90 Identities=20% Similarity=0.267 Sum_probs=60.5
Q ss_pred cccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhhhhhHH
Q 009974 78 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARR 157 (521)
Q Consensus 78 di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~ 157 (521)
+++-.+++.+.+.++.+.+..|. .+.||.|.+|+||++++|..|.-++..++.+....-.+ ..+....
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~----------Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPR----------GHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTT----------EEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCCC----------CCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHH
Confidence 56677788888888888777553 27999999999999999999998899998877543211 1223455
Q ss_pred HHHHHHHHH-hcCCcEEEEcccc
Q 009974 158 VRSLFQAAK-KKAPCIIFIDEID 179 (521)
Q Consensus 158 i~~~f~~a~-~~~p~Il~IDEiD 179 (521)
++.++..|- .+.|.+++++|-+
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECCC
T ss_pred HHHHHHHHhccCCCeEEEecCcc
Confidence 666666654 4568888887754
No 414
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.02 E-value=0.0011 Score=62.06 Aligned_cols=131 Identities=24% Similarity=0.283 Sum_probs=60.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhh-hhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF-VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG 190 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~-~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~ 190 (521)
-++|+||+|||||.+|-++|++.|.|++..+.-.+.... +|.+ +.... . ..+-+ =++|||-..- .+.-
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sg-rp~~~---e-l~~~~-RiyL~~r~l~-----~G~i 71 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSG-RPTPS---E-LKGTR-RIYLDDRPLS-----DGII 71 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT----SG---G-GTT-E-EEES----GG-----G-S-
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccC-CCCHH---H-Hcccc-eeeecccccc-----CCCc
Confidence 478999999999999999999999999998876654432 2222 11100 0 01111 3677763322 1112
Q ss_pred ccHHHHHHHHHhhhcCccCCceEEEeecCCC-CCC--CccccCCCccce-EEecCCCCHHHHHHHHHHH
Q 009974 191 HTKKTLHQLLVEMDGFEQNEGIILMAATNLP-DIL--DPALTRPGRFDR-HIVVPNPDVRGRQEILELY 255 (521)
Q Consensus 191 ~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~-~~l--d~al~r~gRf~~-~i~~~~P~~~~r~~il~~~ 255 (521)
........|+..++.......+++=+-+... ..+ ++-... .|.. +..++.|+.+.-..-.+..
T Consensus 72 ~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~~--~f~w~i~rl~l~d~~~f~~ra~~R 138 (233)
T PF01745_consen 72 NAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWSL--DFRWHIRRLRLPDEEVFMARAKRR 138 (233)
T ss_dssp -HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTSS--SSEEEEEE-----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhcccccC--CCeEEEEEEECCChHHHHHHHHHH
Confidence 3455666777778777665555554433211 000 111111 3444 4566788877655444333
No 415
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.02 E-value=0.0056 Score=66.02 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=30.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHh----cCCCEEEEeCc
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGE----AGVPFFYRAGS 144 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~----~~~~~~~i~~~ 144 (521)
|.+..+.+|++||||||||+||..++.+ .|-+.++++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4455678999999999999999998543 36788877754
No 416
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.02 E-value=0.0011 Score=62.66 Aligned_cols=23 Identities=48% Similarity=0.590 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~ 134 (521)
-+.+.||.|||||++|-+.|.+.
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998754
No 417
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.01 E-value=0.0033 Score=64.96 Aligned_cols=23 Identities=57% Similarity=0.741 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~ 134 (521)
-+++.|.||||||.+|-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 418
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.00 E-value=0.0032 Score=62.91 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc----C-CCEEEEeCchh
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA----G-VPFFYRAGSEF 146 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~----~-~~~~~i~~~~~ 146 (521)
.++.++|+||+|+||||++..+|..+ + ..+..+++..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 45689999999999999999998755 3 56666666543
No 419
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.00052 Score=62.09 Aligned_cols=30 Identities=37% Similarity=0.510 Sum_probs=27.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 142 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~ 142 (521)
.++++|.|||||||+++.|+ ++|.+++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48899999999999999999 9999888754
No 420
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.99 E-value=0.0042 Score=59.35 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 009974 111 KGILLTGAPGTGKTLLAKAIAG 132 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~ 132 (521)
.-+.+.||+|||||||...++.
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3588999999999999999976
No 421
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.99 E-value=0.0043 Score=61.45 Aligned_cols=70 Identities=20% Similarity=0.307 Sum_probs=38.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhh-h--hh-hhhhhHHHHHHHHHHHh---cCCcEEEEcccccc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE-E--MF-VGVGARRVRSLFQAAKK---KAPCIIFIDEIDAV 181 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~-~--~~-~g~~~~~i~~~f~~a~~---~~p~Il~IDEiD~l 181 (521)
=|+|+|-||+|||++|+.|+..+ +..++.++...+. . .| ....++..+..+..+-. ....||++|+..++
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 37899999999999999999864 5677777755543 1 12 12234444444333321 23469999998766
No 422
>PRK04040 adenylate kinase; Provisional
Probab=96.99 E-value=0.00074 Score=63.25 Aligned_cols=30 Identities=27% Similarity=0.404 Sum_probs=26.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc--CCCEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA--GVPFF 139 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~--~~~~~ 139 (521)
|+-++++|+|||||||+++.+++.+ +.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 5579999999999999999999998 55554
No 423
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.98 E-value=0.0045 Score=57.03 Aligned_cols=103 Identities=21% Similarity=0.348 Sum_probs=56.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEEeCchh--------h--------h--hhh-------hhhhHHHHHHH
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSEF--------E--------E--MFV-------GVGARRVRSLF 162 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~--~~~~i~~~~~--------~--------~--~~~-------g~~~~~i~~~f 162 (521)
..-+.|.||+|+|||+|.+.++..... --+.++..++ . . .+. =.+.++.+-.+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~l 107 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGL 107 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHH
Confidence 346889999999999999999986421 0111111110 0 0 000 01123344556
Q ss_pred HHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCC
Q 009974 163 QAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 222 (521)
Q Consensus 163 ~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~ 222 (521)
..+-...|.++++||--.- .+......+..++..+. .. +..+|.+|++.+
T Consensus 108 a~al~~~p~~lllDEPt~~------LD~~~~~~l~~~l~~~~---~~-~~tii~~sh~~~ 157 (173)
T cd03246 108 ARALYGNPRILVLDEPNSH------LDVEGERALNQAIAALK---AA-GATRIVIAHRPE 157 (173)
T ss_pred HHHHhcCCCEEEEECCccc------cCHHHHHHHHHHHHHHH---hC-CCEEEEEeCCHH
Confidence 6666778999999995432 12233444445554443 22 345556666554
No 424
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0053 Score=62.89 Aligned_cols=145 Identities=20% Similarity=0.293 Sum_probs=83.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc--CCCEEEEeCchhhhhhh------h--------hhhHHHHHHHHHHHhcCCcEEE
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA--GVPFFYRAGSEFEEMFV------G--------VGARRVRSLFQAAKKKAPCIIF 174 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~--~~~~~~i~~~~~~~~~~------g--------~~~~~i~~~f~~a~~~~p~Il~ 174 (521)
.-+|+-|.||.|||||.-.++..+ ..+++|+++.+-..... + ..+.++..+.+.....+|.+++
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvV 173 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVV 173 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEE
Confidence 357788999999999988887765 34899999876433321 1 1235677888888889999999
Q ss_pred EccccccccCCcCC-Ccc---cHHHHHHHHHhhhcCccCCceEEEeecCCCC-CCCccccCCCccceEEecCCCCHHHHH
Q 009974 175 IDEIDAVGSTRKQW-EGH---TKKTLHQLLVEMDGFEQNEGIILMAATNLPD-ILDPALTRPGRFDRHIVVPNPDVRGRQ 249 (521)
Q Consensus 175 IDEiD~l~~~~~~~-~~~---~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~-~ld~al~r~gRf~~~i~~~~P~~~~r~ 249 (521)
||-|..+....-.. ++. .+...+.|.+.-+ ..+..+++++=-.... .--|.++- +-.|..++|. -|.....
T Consensus 174 IDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK--~~~i~~fiVGHVTKeG~IAGPrvLE-HmVDtVlyFE-Gd~~~~~ 249 (456)
T COG1066 174 IDSIQTLYSEEITSAPGSVSQVREVAAELMRLAK--TKNIAIFIVGHVTKEGAIAGPRVLE-HMVDTVLYFE-GDRHSRY 249 (456)
T ss_pred EeccceeecccccCCCCcHHHHHHHHHHHHHHHH--HcCCeEEEEEEEcccccccCchhee-eeeeEEEEEe-ccCCCce
Confidence 99999986654222 222 2333334443332 1223344444222222 22333332 2345566664 2333445
Q ss_pred HHHHHHhccC
Q 009974 250 EILELYLQDK 259 (521)
Q Consensus 250 ~il~~~l~~~ 259 (521)
+|++.+-+..
T Consensus 250 RiLR~vKNRF 259 (456)
T COG1066 250 RILRSVKNRF 259 (456)
T ss_pred eeeehhcccC
Confidence 5665544333
No 425
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.0032 Score=57.99 Aligned_cols=25 Identities=40% Similarity=0.373 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
...+.|.||+|+|||+|.+.++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999854
No 426
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.97 E-value=0.00097 Score=67.65 Aligned_cols=69 Identities=25% Similarity=0.368 Sum_probs=44.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEe-Cchhhh------hhhhhhhHHHHHHHHHHHhcCCcEEEEccc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRA-GSEFEE------MFVGVGARRVRSLFQAAKKKAPCIIFIDEI 178 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~-----~~~~~~i~-~~~~~~------~~~g~~~~~i~~~f~~a~~~~p~Il~IDEi 178 (521)
++++++||+|+|||+++++++... ...++.+. ..++.- .+.....-...+++..+....|..|++.|+
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGEi 228 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEV 228 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 489999999999999999999863 12233221 111110 000011224567788888888999999997
Q ss_pred c
Q 009974 179 D 179 (521)
Q Consensus 179 D 179 (521)
-
T Consensus 229 R 229 (319)
T PRK13894 229 R 229 (319)
T ss_pred C
Confidence 4
No 427
>PF13245 AAA_19: Part of AAA domain
Probab=96.97 E-value=0.0012 Score=52.00 Aligned_cols=32 Identities=41% Similarity=0.474 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHH-HHHHHHHHhc------CCCEEEEeC
Q 009974 112 GILLTGAPGTGKT-LLAKAIAGEA------GVPFFYRAG 143 (521)
Q Consensus 112 ~vLL~GppGtGKT-~la~alA~~~------~~~~~~i~~ 143 (521)
-+++.|||||||| ++++.++... +..++.++.
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 4566999999999 5666665554 445665554
No 428
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.96 E-value=0.0028 Score=57.29 Aligned_cols=105 Identities=25% Similarity=0.373 Sum_probs=57.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCC--EEEEeCchhhh-------hhhh-----hhhHHHHHHHHHHHhcCCcEEEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVP--FFYRAGSEFEE-------MFVG-----VGARRVRSLFQAAKKKAPCIIFI 175 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~--~~~i~~~~~~~-------~~~g-----~~~~~i~~~f~~a~~~~p~Il~I 175 (521)
...+.|.||+|+|||+++++++...... -+.++...... ...+ .+....+-.+..+-...|.++++
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3578899999999999999999866321 12333221110 0000 11223334455556667899999
Q ss_pred ccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCC
Q 009974 176 DEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 224 (521)
Q Consensus 176 DEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~l 224 (521)
||...=. +......+..++..+. .. +..++.+|+.++.+
T Consensus 105 DEp~~~l------D~~~~~~l~~~l~~~~---~~-~~tii~~sh~~~~~ 143 (157)
T cd00267 105 DEPTSGL------DPASRERLLELLRELA---EE-GRTVIIVTHDPELA 143 (157)
T ss_pred eCCCcCC------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 9975432 2223334444444432 22 33556666665543
No 429
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.96 E-value=0.002 Score=59.26 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
+...+.|.||+|+|||+|.+.++...
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34568999999999999999999864
No 430
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.95 E-value=0.0016 Score=65.87 Aligned_cols=71 Identities=24% Similarity=0.382 Sum_probs=45.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEEeC-chhhh-------hh-----hhhhhHHHHHHHHHHHhcCCcEE
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAG-SEFEE-------MF-----VGVGARRVRSLFQAAKKKAPCII 173 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~~--~~~~i~~-~~~~~-------~~-----~g~~~~~i~~~f~~a~~~~p~Il 173 (521)
...++++.||+|+||||+++++++.... ..+.+.- .++.- .. .+...-.+.+++..+....|.++
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~i 222 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRI 222 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeE
Confidence 3458999999999999999999986631 2222211 11100 00 01112235667777778889999
Q ss_pred EEcccc
Q 009974 174 FIDEID 179 (521)
Q Consensus 174 ~IDEiD 179 (521)
++||+-
T Consensus 223 i~gE~r 228 (308)
T TIGR02788 223 ILGELR 228 (308)
T ss_pred EEeccC
Confidence 999975
No 431
>PRK13764 ATPase; Provisional
Probab=96.94 E-value=0.0011 Score=72.38 Aligned_cols=69 Identities=22% Similarity=0.267 Sum_probs=40.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC---CEEEEe-Cchh-----hhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGV---PFFYRA-GSEF-----EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDA 180 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~---~~~~i~-~~~~-----~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~ 180 (521)
.++|++||||+||||++++++..+.. .+..+. ..++ ...+... ..........+....|.++++||+-.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~-~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKL-EGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeec-cccHHHHHHHHHhhCCCEEEECCCCC
Confidence 58999999999999999999987642 222221 1111 1111000 01112222333456799999999853
No 432
>PRK14527 adenylate kinase; Provisional
Probab=96.94 E-value=0.00075 Score=63.33 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=27.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
.|.-++++||||+||||+|+.++...+.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 45679999999999999999999999876554
No 433
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.94 E-value=0.0041 Score=58.85 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 009974 111 KGILLTGAPGTGKTLLAKAIAG 132 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~ 132 (521)
.-++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4699999999999999999983
No 434
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.93 E-value=0.0015 Score=66.87 Aligned_cols=70 Identities=26% Similarity=0.409 Sum_probs=44.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEEeC-chhhh-------h-h----hhhhhHHHHHHHHHHHhcCCcEEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAG-SEFEE-------M-F----VGVGARRVRSLFQAAKKKAPCIIF 174 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~--~~~~i~~-~~~~~-------~-~----~g~~~~~i~~~f~~a~~~~p~Il~ 174 (521)
.++++++||+|+||||++++++..... .++.+.- .++.- . + .+...-....++..+....|..|+
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~Ii 241 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRIL 241 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEE
Confidence 358999999999999999999987632 2222211 11100 0 0 011122345677777777888888
Q ss_pred Ecccc
Q 009974 175 IDEID 179 (521)
Q Consensus 175 IDEiD 179 (521)
+.|+-
T Consensus 242 vGEiR 246 (344)
T PRK13851 242 LGEMR 246 (344)
T ss_pred EEeeC
Confidence 88864
No 435
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.93 E-value=0.0068 Score=56.10 Aligned_cols=27 Identities=33% Similarity=0.553 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.....+.|.||+|+|||+|++.+++..
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344578999999999999999999864
No 436
>PRK02496 adk adenylate kinase; Provisional
Probab=96.93 E-value=0.00077 Score=62.75 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
-+++.||||+|||++++.+|..++.+.+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998876653
No 437
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.93 E-value=0.00085 Score=62.42 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=25.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
-+++.||||+||||+++.+++.+|.+.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 58899999999999999999998866543
No 438
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.92 E-value=0.0052 Score=59.97 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+-|.||.|||||||.|++++-+
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 457789999999999999998843
No 439
>PTZ00035 Rad51 protein; Provisional
Probab=96.92 E-value=0.0045 Score=63.37 Aligned_cols=110 Identities=13% Similarity=0.135 Sum_probs=60.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCchh-hhhhh-------hh----------------h
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF-EEMFV-------GV----------------G 154 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~---------~~~~~~i~~~~~-~~~~~-------g~----------------~ 154 (521)
+...-+.|+||||+|||+++..++... +...++++...- ..... +. .
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccCCH
Confidence 334457799999999999999997533 345666665431 10000 00 0
Q ss_pred h---HHHHHHHHHHHhcCCcEEEEccccccccCCcCCCc---ccHHHHHHHHHhhhcCccCCceEEEee
Q 009974 155 A---RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG---HTKKTLHQLLVEMDGFEQNEGIILMAA 217 (521)
Q Consensus 155 ~---~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~---~~~~~l~~ll~~l~~~~~~~~vivI~t 217 (521)
. ..+..+........+.+|+||-+-.+....-...+ ..++.+.+++..|..+....++.|+.|
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 0 11112222223456789999999987543211111 123445666666655544566666654
No 440
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.91 E-value=0.00082 Score=64.10 Aligned_cols=28 Identities=43% Similarity=0.718 Sum_probs=25.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 113 ILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
|++.||||+||||+|+.||...+.+.+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999999877665
No 441
>PRK13808 adenylate kinase; Provisional
Probab=96.90 E-value=0.0039 Score=63.25 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=27.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 147 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 147 (521)
.|+|.||||+|||++++.|+..++.+.+. ..++.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is--~gdlL 35 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLS--TGDML 35 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceec--ccHHH
Confidence 38999999999999999999999875554 44444
No 442
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.90 E-value=0.0027 Score=63.89 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=28.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 147 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 147 (521)
+.-+++.|||||||||+|+.+++++. .++.++...+.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r 38 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLR 38 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHH
Confidence 34689999999999999999999983 34455555543
No 443
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.89 E-value=0.0017 Score=67.08 Aligned_cols=68 Identities=26% Similarity=0.332 Sum_probs=44.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC-----CCEEEEeCc-hhh-----------hhhhhhhhHHHHHHHHHHHhcCCcEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAG-----VPFFYRAGS-EFE-----------EMFVGVGARRVRSLFQAAKKKAPCIIF 174 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~-----~~~~~i~~~-~~~-----------~~~~g~~~~~i~~~f~~a~~~~p~Il~ 174 (521)
.+|++||+|+||||+++++.+... ..++.+.-. ++. ...+|............+....|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 689999999999999999987662 334443211 211 011122222345566667777899999
Q ss_pred Ecccc
Q 009974 175 IDEID 179 (521)
Q Consensus 175 IDEiD 179 (521)
+.|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99985
No 444
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.89 E-value=0.023 Score=56.38 Aligned_cols=38 Identities=32% Similarity=0.493 Sum_probs=29.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCch
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 145 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~ 145 (521)
..|+-++|+||+|+||||++..+|..+ +..+..+++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 456789999999999999999998765 55565565543
No 445
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.0018 Score=62.87 Aligned_cols=58 Identities=22% Similarity=0.309 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCC
Q 009974 156 RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 223 (521)
Q Consensus 156 ~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ 223 (521)
+..|-++++|-...|.++++||=-. .-+...+..+..++..+. .. +..|+..|.+...
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~~------gvD~~~~~~i~~lL~~l~---~e-g~tIl~vtHDL~~ 201 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPFT------GVDVAGQKEIYDLLKELR---QE-GKTVLMVTHDLGL 201 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCcc------cCCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCcHH
Confidence 4445577777788899999999321 122334556666666665 34 6677777776554
No 446
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.87 E-value=0.0034 Score=67.44 Aligned_cols=94 Identities=20% Similarity=0.249 Sum_probs=56.5
Q ss_pred cCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCce-EEEEcCCCCcHHHHHHHHHHhcC---CCEEEEeC-chhh
Q 009974 73 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKG-ILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAG-SEFE 147 (521)
Q Consensus 73 ~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~-vLL~GppGtGKT~la~alA~~~~---~~~~~i~~-~~~~ 147 (521)
..+++++.-.++..+.+++++. .|.| ++++||+|+||||+.+++.++.+ ..++.+.. .++.
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~--------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~ 283 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIR--------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ 283 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee
Confidence 4578887666666666665553 1234 78999999999999998877664 33444322 1111
Q ss_pred hh-----hhhh-hhHHHHHHHHHHHhcCCcEEEEccccc
Q 009974 148 EM-----FVGV-GARRVRSLFQAAKKKAPCIIFIDEIDA 180 (521)
Q Consensus 148 ~~-----~~g~-~~~~i~~~f~~a~~~~p~Il~IDEiD~ 180 (521)
-. .+.. ...........+....|.+|++.|+-.
T Consensus 284 ~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 284 IEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred cCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 00 0000 012234455566667899999999753
No 447
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.87 E-value=0.0016 Score=50.28 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 009974 113 ILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~~ 134 (521)
+.+.|+||+|||++++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999985
No 448
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.87 E-value=0.0048 Score=56.47 Aligned_cols=26 Identities=42% Similarity=0.584 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
+..-+.|.||+|+|||||++.++...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999999864
No 449
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.87 E-value=0.0039 Score=63.27 Aligned_cols=112 Identities=15% Similarity=0.170 Sum_probs=60.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc------C---CCEEEEeCchh-hhh-h------hhhh---------------
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEA------G---VPFFYRAGSEF-EEM-F------VGVG--------------- 154 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~------~---~~~~~i~~~~~-~~~-~------~g~~--------------- 154 (521)
.....-+.++||||+|||+++..++..+ + ...++++...- ... . .+..
T Consensus 93 i~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~~ 172 (316)
T TIGR02239 93 IETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAYN 172 (316)
T ss_pred CCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecCC
Confidence 3444557899999999999999988632 1 35677766542 100 0 0000
Q ss_pred h----HHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcc---cHHHHHHHHHhhhcCccCCceEEEeec
Q 009974 155 A----RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH---TKKTLHQLLVEMDGFEQNEGIILMAAT 218 (521)
Q Consensus 155 ~----~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~---~~~~l~~ll~~l~~~~~~~~vivI~tt 218 (521)
. ..+..+........+.+|+||-+-.+....-...+. .+..+.+++..|..+....++.||.|.
T Consensus 173 ~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~~~~~~rq~~l~~~~~~L~~la~~~~vavv~tN 243 (316)
T TIGR02239 173 TDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRLADEFGVAVVITN 243 (316)
T ss_pred hHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 0 111122222234567899999998885432111111 123445666666555445566666553
No 450
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.87 E-value=0.0029 Score=59.75 Aligned_cols=42 Identities=31% Similarity=0.556 Sum_probs=32.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc-CCCEEEEeCchhhhh
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEA-GVPFFYRAGSEFEEM 149 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~-~~~~~~i~~~~~~~~ 149 (521)
..|.-+++.|+||+|||+++..+.... +..++.++..++...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 567889999999999999999999988 778888888877554
No 451
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.86 E-value=0.00098 Score=63.78 Aligned_cols=29 Identities=41% Similarity=0.678 Sum_probs=26.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
-|+++||||+|||++++.+|..++.+.+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 38999999999999999999999876665
No 452
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.86 E-value=0.0071 Score=56.72 Aligned_cols=120 Identities=23% Similarity=0.347 Sum_probs=70.1
Q ss_pred hhcCCCCC--ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhh----------------------------
Q 009974 103 TRLGGKLP--KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM---------------------------- 149 (521)
Q Consensus 103 ~~~g~~~p--~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~---------------------------- 149 (521)
.++|+-.| .-+++.|+.|||||.|++.++--. +....+++...-...
T Consensus 19 krLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~ 98 (235)
T COG2874 19 KRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNL 98 (235)
T ss_pred hhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecc
Confidence 34555444 457889999999999999997622 333333322111000
Q ss_pred ----h-hhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCC
Q 009974 150 ----F-VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 224 (521)
Q Consensus 150 ----~-~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~l 224 (521)
| .....+.+..+.+..+.....|++||-+..+.... ....+.+++..+..+.+..+++++ |-+|..+
T Consensus 99 ~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~------~~~~vl~fm~~~r~l~d~gKvIil--Tvhp~~l 170 (235)
T COG2874 99 EPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD------SEDAVLNFMTFLRKLSDLGKVIIL--TVHPSAL 170 (235)
T ss_pred cccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc------cHHHHHHHHHHHHHHHhCCCEEEE--EeChhhc
Confidence 0 01122334445555555556799999999886542 344556666666666666665554 3456777
Q ss_pred CccccC
Q 009974 225 DPALTR 230 (521)
Q Consensus 225 d~al~r 230 (521)
+++.+-
T Consensus 171 ~e~~~~ 176 (235)
T COG2874 171 DEDVLT 176 (235)
T ss_pred CHHHHH
Confidence 776654
No 453
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.85 E-value=0.0044 Score=69.41 Aligned_cols=114 Identities=19% Similarity=0.190 Sum_probs=64.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHH---hcCCCEEEEeCchhhh-hh---hh------------hhhHHHHHHHHHHH
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAG---EAGVPFFYRAGSEFEE-MF---VG------------VGARRVRSLFQAAK 166 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~---~~~~~~~~i~~~~~~~-~~---~g------------~~~~~i~~~f~~a~ 166 (521)
|.+....++++||||||||+|+..++. ..|.+.++++...-.. .+ .| ..+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 344456788999999999999976654 3366777776644221 00 00 01122222222234
Q ss_pred hcCCcEEEEccccccccCCcCC---C-c---ccHHHHHHHHHhhhcCccCCceEEEeecC
Q 009974 167 KKAPCIIFIDEIDAVGSTRKQW---E-G---HTKKTLHQLLVEMDGFEQNEGIILMAATN 219 (521)
Q Consensus 167 ~~~p~Il~IDEiD~l~~~~~~~---~-~---~~~~~l~~ll~~l~~~~~~~~vivI~ttn 219 (521)
...+.+|+||-+..+.+..+-. . . ...+.+++++..|..+....++.+|.|-.
T Consensus 136 ~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TNQ 195 (790)
T PRK09519 136 SGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQ 195 (790)
T ss_pred cCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 5678999999999987521110 1 1 11233355565555554566677776643
No 454
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.84 E-value=0.022 Score=59.91 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=30.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchh
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 146 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~ 146 (521)
..|.-++|+||+|+||||++..+|..+ |..+..+++..+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF 139 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 346789999999999999999998765 666666666443
No 455
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.84 E-value=0.0082 Score=56.74 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 009974 111 KGILLTGAPGTGKTLLAKAIA 131 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA 131 (521)
+.++|+||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 456
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.84 E-value=0.0061 Score=56.14 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCcHHH-HHHHHHHhcC----CCEEEEeC
Q 009974 111 KGILLTGAPGTGKTL-LAKAIAGEAG----VPFFYRAG 143 (521)
Q Consensus 111 ~~vLL~GppGtGKT~-la~alA~~~~----~~~~~i~~ 143 (521)
+.+++.||+|||||+ ++..+..... .+++.+..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 479999999999999 5555544432 34555544
No 457
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.84 E-value=0.002 Score=57.97 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=27.4
Q ss_pred EEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhh
Q 009974 115 LTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 150 (521)
Q Consensus 115 L~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 150 (521)
|.||||+|||++|+.||.+.+. ..++..++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~ 34 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREE 34 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHH
Confidence 5799999999999999999875 556666665543
No 458
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.83 E-value=0.004 Score=70.26 Aligned_cols=100 Identities=24% Similarity=0.324 Sum_probs=57.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---C--CCEEEEeCchh----hhhhhhhhhHHHHHHHHHHH----------hcCCcE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA---G--VPFFYRAGSEF----EEMFVGVGARRVRSLFQAAK----------KKAPCI 172 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~---~--~~~~~i~~~~~----~~~~~g~~~~~i~~~f~~a~----------~~~p~I 172 (521)
-++|.|+||||||++++++...+ + .+++.+....- .....|.....+..++.... .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999986644 4 34443332211 11112222333444443211 123469
Q ss_pred EEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCC
Q 009974 173 IFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 224 (521)
Q Consensus 173 l~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~l 224 (521)
|+|||+..+ ....+..|+..+ ....++++++-.+....+
T Consensus 420 lIvDEaSMv----------d~~~~~~Ll~~~---~~~~rlilvGD~~QLpsV 458 (720)
T TIGR01448 420 LIVDESSMM----------DTWLALSLLAAL---PDHARLLLVGDTDQLPSV 458 (720)
T ss_pred EEEeccccC----------CHHHHHHHHHhC---CCCCEEEEECccccccCC
Confidence 999999877 234455665543 346678888866654433
No 459
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.83 E-value=0.0009 Score=57.83 Aligned_cols=22 Identities=45% Similarity=0.733 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 009974 113 ILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~~ 134 (521)
|+|.|+|||||||+|+.|+.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 460
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.82 E-value=0.0062 Score=56.50 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
+..-+.|.||+|+|||||++.++...
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33468899999999999999999864
No 461
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.80 E-value=0.01 Score=55.80 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=18.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 009974 111 KGILLTGAPGTGKTLLAKAIAG 132 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~ 132 (521)
.-.-|.||+||||||+.|++=+
T Consensus 34 ~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHHh
Confidence 3466899999999999999954
No 462
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.79 E-value=0.0035 Score=63.90 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=31.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 147 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 147 (521)
+.+.|.|+||+|||||++.+++..+.+++.-.+.++.
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~ 199 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYV 199 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHH
Confidence 4799999999999999999999999998765554443
No 463
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.79 E-value=0.0036 Score=64.04 Aligned_cols=112 Identities=13% Similarity=0.139 Sum_probs=62.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCchh------hhhh--hhh---------------hh
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF------EEMF--VGV---------------GA 155 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~---------~~~~~~i~~~~~------~~~~--~g~---------------~~ 155 (521)
....-+.++|+||+|||+++..+|-.. +.+.++++...- .... .+. ..
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecCCH
Confidence 333457799999999999999887432 236777776541 1000 000 00
Q ss_pred H----HHHHHHHHHHhcCCcEEEEccccccccCCcCCCc---ccHHHHHHHHHhhhcCccCCceEEEeecC
Q 009974 156 R----RVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG---HTKKTLHQLLVEMDGFEQNEGIILMAATN 219 (521)
Q Consensus 156 ~----~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~---~~~~~l~~ll~~l~~~~~~~~vivI~ttn 219 (521)
. .+..+........+.+|+||-+-.+....-...+ ..+..+.+++..|..+....++.||.|..
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNq 271 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLADEFGVAVVITNQ 271 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 1 1112222234456889999999987543211111 12334566666666555556667666543
No 464
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.77 E-value=0.011 Score=64.13 Aligned_cols=40 Identities=30% Similarity=0.348 Sum_probs=30.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCch
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSE 145 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~----~~~~~~i~~~~ 145 (521)
|.+....+|++|+||+|||+|+..++.+. |.+.++++..+
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee 70 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE 70 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC
Confidence 34455679999999999999999876532 66777776644
No 465
>PRK01184 hypothetical protein; Provisional
Probab=96.75 E-value=0.0013 Score=61.20 Aligned_cols=29 Identities=41% Similarity=0.618 Sum_probs=25.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
-|+|+||||+||||+++ ++++.|.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58899999999999998 788999888654
No 466
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.75 E-value=0.023 Score=60.13 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=28.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeCchh
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSEF 146 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~-----~~~~~~i~~~~~ 146 (521)
++.++|.||+|+||||++..+|..+ +..+..+++..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 4578999999999999998887643 345666666553
No 467
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.75 E-value=0.0029 Score=55.48 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=24.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVP 137 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~ 137 (521)
.-++|.|+.|+|||++++.+++.++.+
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 468999999999999999999999865
No 468
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.74 E-value=0.025 Score=57.46 Aligned_cols=37 Identities=35% Similarity=0.450 Sum_probs=28.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 144 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~ 144 (521)
..|.-++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 456789999999999999999999865 4455555543
No 469
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.74 E-value=0.0025 Score=59.59 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=27.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhh
Q 009974 113 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 149 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 149 (521)
|.|+|++|||||++++.++...+.+++ ++..+...
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~~~ 36 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI--DADKIAHQ 36 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHHHH
Confidence 679999999999999999998767665 45555443
No 470
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.74 E-value=0.0042 Score=63.02 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~ 133 (521)
-+.|.||+||||||+.|.||.-
T Consensus 31 f~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999983
No 471
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.74 E-value=0.014 Score=55.35 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 009974 111 KGILLTGAPGTGKTLLAKAIAG 132 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~ 132 (521)
+-++|+||+|+|||++.+.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999964
No 472
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.73 E-value=0.0032 Score=60.50 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=18.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 009974 112 GILLTGAPGTGKTLLAKAIAG 132 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~ 132 (521)
-+.|.||+||||||+.+.+-+
T Consensus 29 f~vliGpSGsGKTTtLkMINr 49 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINR 49 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 377899999999999999955
No 473
>PRK04182 cytidylate kinase; Provisional
Probab=96.73 E-value=0.0015 Score=60.29 Aligned_cols=29 Identities=34% Similarity=0.599 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
.|.|.|+||+|||++++.+|..++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48899999999999999999999998875
No 474
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.72 E-value=0.016 Score=52.30 Aligned_cols=129 Identities=15% Similarity=0.181 Sum_probs=67.0
Q ss_pred EcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHH
Q 009974 116 TGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKT 195 (521)
Q Consensus 116 ~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~ 195 (521)
.+.+||||||++.+|++-.+- +-.+...++..+ ...+-+....+........+||.|-=... .+-
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~-----------~re 69 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQ-----------KRE 69 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCch-----------HHH
Confidence 578999999999999999872 333444444332 23344555555554344458888853222 222
Q ss_pred HHHHHHhhhcCc-----cCCceEEEeecCCCCCCCccc--------cCCCccceEEecCCCCHHHHHHHHHHHhccC
Q 009974 196 LHQLLVEMDGFE-----QNEGIILMAATNLPDILDPAL--------TRPGRFDRHIVVPNPDVRGRQEILELYLQDK 259 (521)
Q Consensus 196 l~~ll~~l~~~~-----~~~~vivI~ttn~~~~ld~al--------~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~ 259 (521)
-.+++..++... ...++-+||-.=..+.-.+.+ ...|-=...|.....+...-..|++.|++..
T Consensus 70 R~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rf 146 (168)
T PF08303_consen 70 RKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRF 146 (168)
T ss_pred HHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhc
Confidence 234444433322 233555555432222211111 1111111255555556677777777777654
No 475
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.72 E-value=0.005 Score=60.75 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 009974 111 KGILLTGAPGTGKTLLAKAIAG 132 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~ 132 (521)
.-+-|.||+|+||||+.|.||.
T Consensus 29 e~vaLlGpSGaGKsTlLRiIAG 50 (345)
T COG1118 29 ELVALLGPSGAGKSTLLRIIAG 50 (345)
T ss_pred cEEEEECCCCCcHHHHHHHHhC
Confidence 4588999999999999999997
No 476
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.72 E-value=0.0056 Score=62.03 Aligned_cols=84 Identities=23% Similarity=0.377 Sum_probs=51.9
Q ss_pred Ccc-cccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC-CCEEEEeCchhhhhhhh
Q 009974 75 TFK-DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG-VPFFYRAGSEFEEMFVG 152 (521)
Q Consensus 75 ~f~-di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~-~~~~~i~~~~~~~~~~g 152 (521)
-|+ ++.|.++...++ |++++.... . ....-+-++|.||+|+|||++++.|-+-+. .+++.+..+-..+.-..
T Consensus 58 ~f~~~~~G~~~~i~~l---V~~fk~AA~--g-~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~ 131 (358)
T PF08298_consen 58 FFEDEFYGMEETIERL---VNYFKSAAQ--G-LEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLH 131 (358)
T ss_pred CccccccCcHHHHHHH---HHHHHHHHh--c-cCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhh
Confidence 466 899999975555 445443222 1 122235788999999999999999988663 36666544433333333
Q ss_pred hhhHHHHHHHHH
Q 009974 153 VGARRVRSLFQA 164 (521)
Q Consensus 153 ~~~~~i~~~f~~ 164 (521)
...+.++..|..
T Consensus 132 L~P~~~r~~~~~ 143 (358)
T PF08298_consen 132 LFPKELRREFED 143 (358)
T ss_pred hCCHhHHHHHHH
Confidence 334555555543
No 477
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.72 E-value=0.028 Score=59.31 Aligned_cols=74 Identities=23% Similarity=0.289 Sum_probs=46.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCchhhhh-------hh---h---------h-hhHHHHHHHH
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEM-------FV---G---------V-GARRVRSLFQ 163 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~----~~~~~~i~~~~~~~~-------~~---g---------~-~~~~i~~~f~ 163 (521)
..|..++++||+|+||||++..+|..+ |..+..+++..+... +. + . ........+.
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 457789999999999999988887653 566777777644221 00 0 0 1122234455
Q ss_pred HHHhcCCcEEEEcccccc
Q 009974 164 AAKKKAPCIIFIDEIDAV 181 (521)
Q Consensus 164 ~a~~~~p~Il~IDEiD~l 181 (521)
.+......+|+||=...+
T Consensus 177 ~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHhcCCCEEEEeCCCcc
Confidence 555555668888875544
No 478
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.72 E-value=0.0096 Score=55.98 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
+...+.|.||+|+|||+|.+.++...
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999875
No 479
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.71 E-value=0.018 Score=56.85 Aligned_cols=40 Identities=40% Similarity=0.598 Sum_probs=31.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCch
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 145 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~ 145 (521)
|.+..+.+|++|+||||||+++..++.+. |.|+++++..+
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 34455679999999999999999887643 77888877644
No 480
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.71 E-value=0.008 Score=55.41 Aligned_cols=37 Identities=32% Similarity=0.488 Sum_probs=29.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchh
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 146 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~ 146 (521)
+..+.|.|+||+|||++++.++..+ +..+..++...+
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 4578999999999999999999876 445666666544
No 481
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.70 E-value=0.0013 Score=59.95 Aligned_cols=30 Identities=43% Similarity=0.684 Sum_probs=22.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 009974 113 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 143 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~~~~~~~~i~~ 143 (521)
|.|+|+||||||||++.|++. |.+++.-.+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~a 31 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYA 31 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TT
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecH
Confidence 789999999999999999999 888774333
No 482
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.69 E-value=0.0047 Score=63.84 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~ 135 (521)
-++|.||||+|||++++.+++...
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhhc
Confidence 389999999999999999999753
No 483
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.68 E-value=0.0023 Score=59.06 Aligned_cols=28 Identities=36% Similarity=0.376 Sum_probs=24.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~~ 135 (521)
..|.-++|+|+||+||||+++.+++.+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999875
No 484
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.68 E-value=0.079 Score=54.38 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=32.3
Q ss_pred EEecCCCCHHHHHHHHHHHhccCCCCC----cccHHHHHhcCCCCCHHHHHHHH
Q 009974 237 HIVVPNPDVRGRQEILELYLQDKPLAD----DVDVKAIARGTPGFNGADLANLV 286 (521)
Q Consensus 237 ~i~~~~P~~~~r~~il~~~l~~~~~~~----~~~l~~la~~~~g~s~~dl~~lv 286 (521)
.|+++.++.+|-.+++.+|++..-+.. +....++--.. +.+|+-++.+|
T Consensus 405 pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lc 457 (461)
T KOG3928|consen 405 PIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLC 457 (461)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHH
Confidence 578889999999999999987643332 22233333333 56787777666
No 485
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.68 E-value=0.0043 Score=64.96 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=28.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
.+.|.|.|++|||||||+++||+..|.+.+.-
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E 250 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAWE 250 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeeee
Confidence 46799999999999999999999998886643
No 486
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.67 E-value=0.0017 Score=59.36 Aligned_cols=29 Identities=34% Similarity=0.573 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
-|.++|++|+|||++|+.+++.++.+++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 37899999999999999999999999765
No 487
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.65 E-value=0.012 Score=54.65 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
....+.|.||+|+|||||.+.+++..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33468999999999999999999854
No 488
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.62 E-value=0.0072 Score=55.94 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
...+.|.||+|+|||||+++++...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999753
No 489
>PF13479 AAA_24: AAA domain
Probab=96.61 E-value=0.0037 Score=59.80 Aligned_cols=68 Identities=25% Similarity=0.349 Sum_probs=38.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEE-EEeCch--hhhh-----hhhhhhHHHHHHHHHHH--hcCCcEEEEcccc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFF-YRAGSE--FEEM-----FVGVGARRVRSLFQAAK--KKAPCIIFIDEID 179 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~-~i~~~~--~~~~-----~~g~~~~~i~~~f~~a~--~~~p~Il~IDEiD 179 (521)
+-.++||||||+|||++|..+ +.|++ .+.... +... +.-.+-..+.+.+..+. ...-.+|+||-++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 346999999999999999988 33332 222220 0000 00012234444444432 2334699999888
Q ss_pred cc
Q 009974 180 AV 181 (521)
Q Consensus 180 ~l 181 (521)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 75
No 490
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.60 E-value=0.0021 Score=66.18 Aligned_cols=45 Identities=40% Similarity=0.550 Sum_probs=36.1
Q ss_pred cCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 73 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 73 ~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
..+++|---.++.+++|.+-.+ |+|+.||||.||||+|+|+|.-+
T Consensus 243 k~~ledY~L~dkl~eRL~erae-----------------GILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 243 KLSLEDYGLSDKLKERLEERAE-----------------GILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred EechhhcCCCHHHHHHHHhhhc-----------------ceEEecCCCCChhHHHHHHHHHH
Confidence 3468887777777777766443 89999999999999999999854
No 491
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.60 E-value=0.014 Score=63.55 Aligned_cols=78 Identities=29% Similarity=0.297 Sum_probs=49.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhh------h----------------------hh
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV------G----------------------VG 154 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~------g----------------------~~ 154 (521)
|.+....++++||||+|||+++..++.+. |.+.++++..+-...+. | ..
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 34445668899999999999999987643 67777776543211100 0 00
Q ss_pred hHHHHHHHHHHHhcCCcEEEEcccccccc
Q 009974 155 ARRVRSLFQAAKKKAPCIIFIDEIDAVGS 183 (521)
Q Consensus 155 ~~~i~~~f~~a~~~~p~Il~IDEiD~l~~ 183 (521)
...+..+.+.....+|.+++||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 12223333444556788999999988753
No 492
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.59 E-value=0.0058 Score=60.16 Aligned_cols=112 Identities=19% Similarity=0.216 Sum_probs=62.1
Q ss_pred EEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCch-hhh--------hhhhhh------------------hHH
Q 009974 114 LLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSE-FEE--------MFVGVG------------------ARR 157 (521)
Q Consensus 114 LL~GppGtGKT~la~alA~~~---------~~~~~~i~~~~-~~~--------~~~g~~------------------~~~ 157 (521)
=|+||||+|||.++-.+|-.. +...++++... |.. .+.-.. ...
T Consensus 42 Ei~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~~ 121 (256)
T PF08423_consen 42 EIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLEL 121 (256)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHHH
T ss_pred EEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHHH
Confidence 399999999999999887654 33477777643 211 110000 011
Q ss_pred HHHHHHHHHhcCCcEEEEccccccccCCcCCC---cccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCC
Q 009974 158 VRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE---GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILD 225 (521)
Q Consensus 158 i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~---~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld 225 (521)
+..+-......+..+|+||-|-.+....-... ......+..++..|..+....++.||.|..-....+
T Consensus 122 L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~ 192 (256)
T PF08423_consen 122 LEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTKID 192 (256)
T ss_dssp HHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT
T ss_pred HHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecCC
Confidence 11122222234567999999998865321111 123466677776776666667777776544333333
No 493
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.58 E-value=0.009 Score=57.16 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 009974 111 KGILLTGAPGTGKTLLAKAIAG 132 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~ 132 (521)
..+=|.||+||||||++|+++.
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 4577999999999999999987
No 494
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.57 E-value=0.063 Score=57.72 Aligned_cols=124 Identities=10% Similarity=0.166 Sum_probs=82.9
Q ss_pred CCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHH
Q 009974 169 APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGR 248 (521)
Q Consensus 169 ~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r 248 (521)
.|+|+++.|++.+... ....+.+..+...++ ...+.+|+.+.+ ..+++.|.+ +-..+.+|+|+.+++
T Consensus 81 ~~~~~vl~d~h~~~~~-----~~~~r~l~~l~~~~~---~~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~ei 147 (489)
T CHL00195 81 TPALFLLKDFNRFLND-----ISISRKLRNLSRILK---TQPKTIIIIASE--LNIPKELKD---LITVLEFPLPTESEI 147 (489)
T ss_pred CCcEEEEecchhhhcc-----hHHHHHHHHHHHHHH---hCCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCHHHH
Confidence 3789999999998732 122333344433333 234445554443 457777764 556889999999999
Q ss_pred HHHHHHHhccCCC-CCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009974 249 QEILELYLQDKPL-ADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 249 ~~il~~~l~~~~~-~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
.++++.+....+. .++.+++.+++.+.|+|..++++++..+.. ....++.+++...+
T Consensus 148 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~-----~~~~~~~~~~~~i~ 205 (489)
T CHL00195 148 KKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIA-----TYKTIDENSIPLIL 205 (489)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----HcCCCChhhHHHHH
Confidence 9999888764332 245568899999999999999999976432 23456766654443
No 495
>PRK14526 adenylate kinase; Provisional
Probab=96.56 E-value=0.0022 Score=61.16 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 147 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 147 (521)
.++|.||||+||||+++.+|...+.+++. ..++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is--~G~ll 35 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS--TGDLF 35 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee--cChHH
Confidence 38899999999999999999998876544 44443
No 496
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.56 E-value=0.0073 Score=64.04 Aligned_cols=161 Identities=23% Similarity=0.286 Sum_probs=85.5
Q ss_pred cccCcHHHHHHHHHHHHH-h-cCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE---------eCchh
Q 009974 78 DVKGCDDAKQELVEVVEY-L-KNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR---------AGSEF 146 (521)
Q Consensus 78 di~G~~~~k~~L~~~v~~-l-~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i---------~~~~~ 146 (521)
.|.|++.+|+.+.-++-- . ++-..-.+ .+-.-+||+.|.|-|.|+-|.|.+-+.+...+-.. .+.--
T Consensus 302 SI~GH~~vKkAillLLlGGvEk~L~NGsh--lRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEKNLENGSH--LRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhccceeccCCCce--eccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 468999988887765532 0 11111111 12234799999999999999999987653222111 00000
Q ss_pred hhhhhhhhhHHHHH-HHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHh----hh--cC--ccCCceEEEee
Q 009974 147 EEMFVGVGARRVRS-LFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE----MD--GF--EQNEGIILMAA 217 (521)
Q Consensus 147 ~~~~~g~~~~~i~~-~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~----l~--~~--~~~~~vivI~t 217 (521)
.+. ..+++++.. ..-.|. ..|++|||||.+.. ..+-.+.+.+.+ +. |+ .-+.+.-|+++
T Consensus 380 tD~--eTGERRLEAGAMVLAD---RGVVCIDEFDKMsD-------iDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAA 447 (818)
T KOG0479|consen 380 TDQ--ETGERRLEAGAMVLAD---RGVVCIDEFDKMSD-------IDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAA 447 (818)
T ss_pred ecc--ccchhhhhcCceEEcc---CceEEehhcccccc-------hhHHHHHHHHhcceEEeEeccchhhhccceeeeee
Confidence 111 112222211 111122 34999999999932 223333333322 11 11 22456788999
Q ss_pred cCCCC-------------CCCccccCCCccceEEec-CCCCHHHHHHHHHH
Q 009974 218 TNLPD-------------ILDPALTRPGRFDRHIVV-PNPDVRGRQEILEL 254 (521)
Q Consensus 218 tn~~~-------------~ld~al~r~gRf~~~i~~-~~P~~~~r~~il~~ 254 (521)
+|... .|+..|++ |||..+.+ +.-|.+.-..|-.|
T Consensus 448 ANPvyG~Yd~~k~P~eNIgLpDSLLS--RFDLlFv~lD~~d~~~D~~iSeH 496 (818)
T KOG0479|consen 448 ANPVYGQYDQSKTPMENIGLPDSLLS--RFDLLFVVLDDIDADIDRMISEH 496 (818)
T ss_pred cCccccccCCCCChhhccCCcHHHHh--hhcEEEEEeccccchHHHHHHHH
Confidence 99753 36778888 99985544 34444333333333
No 497
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.018 Score=53.94 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~ 133 (521)
...+.|.||+|+|||||++.++..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999999973
No 498
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.55 E-value=0.0073 Score=55.03 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAG 132 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~ 132 (521)
++..+++||.|+|||++.++++-
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999853
No 499
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.55 E-value=0.0093 Score=54.03 Aligned_cols=23 Identities=35% Similarity=0.252 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~ 134 (521)
-+.+|+++|+|||++|-.+|-++
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47789999999999999997654
No 500
>PLN02199 shikimate kinase
Probab=96.54 E-value=0.0051 Score=61.05 Aligned_cols=32 Identities=31% Similarity=0.524 Sum_probs=29.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 142 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i~ 142 (521)
++|+|.|.+|+|||++++.+|+.++++|+..+
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 48999999999999999999999999998644
Done!