Query 009974
Match_columns 521
No_of_seqs 538 out of 3645
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 17:05:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 1.9E-83 6.6E-88 678.2 48.7 429 71-501 10-458 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 1.3E-79 4.5E-84 652.5 45.0 429 72-504 26-471 (499)
3 4b4t_J 26S protease regulatory 100.0 1.1E-51 3.8E-56 423.0 27.0 249 69-317 140-393 (405)
4 4b4t_I 26S protease regulatory 100.0 2.5E-50 8.6E-55 413.7 28.6 249 69-317 174-427 (437)
5 4b4t_H 26S protease regulatory 100.0 1E-49 3.6E-54 412.9 26.2 250 70-319 202-456 (467)
6 4b4t_M 26S protease regulatory 100.0 2.1E-49 7.3E-54 412.1 26.2 248 69-316 173-425 (434)
7 4b4t_L 26S protease subunit RP 100.0 4.8E-49 1.7E-53 409.8 28.2 247 70-316 174-425 (437)
8 4b4t_K 26S protease regulatory 100.0 3.2E-48 1.1E-52 403.0 26.3 246 70-315 165-416 (428)
9 2di4_A Zinc protease, cell div 100.0 2.4E-48 8.1E-53 370.5 18.3 189 315-503 2-203 (238)
10 3cf2_A TER ATPase, transitiona 100.0 1E-43 3.4E-48 393.8 10.5 228 69-296 469-701 (806)
11 3cf2_A TER ATPase, transitiona 100.0 2.5E-41 8.6E-46 374.6 21.8 246 71-316 198-462 (806)
12 1lv7_A FTSH; alpha/beta domain 100.0 5.4E-38 1.9E-42 308.0 28.2 249 69-317 4-256 (257)
13 3cf0_A Transitional endoplasmi 100.0 1.5E-37 5.3E-42 312.1 23.1 245 69-313 7-281 (301)
14 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.7E-37 5.9E-42 304.5 20.9 251 73-323 2-259 (262)
15 2x8a_A Nuclear valosin-contain 100.0 3.3E-37 1.1E-41 305.2 21.7 244 72-315 5-266 (274)
16 3h4m_A Proteasome-activating n 100.0 2.2E-36 7.4E-41 300.8 25.1 247 70-316 10-261 (285)
17 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.1E-35 3.9E-40 301.2 25.0 224 70-296 5-233 (322)
18 3eie_A Vacuolar protein sortin 100.0 8.3E-36 2.9E-40 302.3 22.2 226 68-296 9-238 (322)
19 1ixz_A ATP-dependent metallopr 100.0 6.2E-35 2.1E-39 285.7 25.9 242 69-310 8-253 (254)
20 2qp9_X Vacuolar protein sortin 100.0 7.1E-35 2.4E-39 299.3 22.7 228 66-296 40-271 (355)
21 3hu3_A Transitional endoplasmi 100.0 1.1E-34 3.8E-39 308.4 24.3 242 72-313 199-459 (489)
22 1iy2_A ATP-dependent metallopr 100.0 5.8E-34 2E-38 282.8 26.6 243 68-310 31-277 (278)
23 2r62_A Cell division protease 100.0 8.2E-37 2.8E-41 301.3 4.7 248 69-316 3-256 (268)
24 2zan_A Vacuolar protein sortin 100.0 1.8E-33 6.1E-38 297.1 22.2 228 66-296 123-355 (444)
25 3d8b_A Fidgetin-like protein 1 100.0 1.4E-31 4.7E-36 275.1 24.3 247 67-316 74-337 (357)
26 3b9p_A CG5977-PA, isoform A; A 100.0 7.3E-32 2.5E-36 269.8 21.1 242 69-313 13-272 (297)
27 3vfd_A Spastin; ATPase, microt 100.0 5.8E-31 2E-35 273.6 24.2 245 67-314 105-366 (389)
28 1ypw_A Transitional endoplasmi 100.0 3.8E-33 1.3E-37 313.9 0.1 228 70-297 470-702 (806)
29 3t15_A Ribulose bisphosphate c 100.0 1.7E-31 5.8E-36 267.0 6.9 225 105-344 31-281 (293)
30 1ypw_A Transitional endoplasmi 100.0 9.3E-28 3.2E-32 270.2 23.8 243 72-314 199-460 (806)
31 2c9o_A RUVB-like 1; hexameric 99.9 2.9E-26 1E-30 243.0 -2.0 199 73-288 33-262 (456)
32 3syl_A Protein CBBX; photosynt 99.9 4E-23 1.4E-27 207.3 16.7 225 75-307 28-280 (309)
33 3uk6_A RUVB-like 2; hexameric 99.9 7.5E-23 2.6E-27 210.4 18.5 220 73-314 40-331 (368)
34 3pfi_A Holliday junction ATP-d 99.9 1.1E-21 3.9E-26 199.3 22.9 217 69-313 21-254 (338)
35 1hqc_A RUVB; extended AAA-ATPa 99.9 8.1E-21 2.8E-25 191.6 20.0 215 72-313 7-238 (324)
36 1ofh_A ATP-dependent HSL prote 99.8 1.3E-20 4.3E-25 188.7 15.5 234 77-312 15-298 (310)
37 1d2n_A N-ethylmaleimide-sensit 99.8 1.5E-20 5.1E-25 185.4 15.2 223 76-311 32-262 (272)
38 3m6a_A ATP-dependent protease 99.8 2.9E-20 9.8E-25 200.7 12.5 222 75-312 79-340 (543)
39 2z4s_A Chromosomal replication 99.8 2.8E-19 9.7E-24 188.2 18.8 220 72-314 100-333 (440)
40 2chg_A Replication factor C sm 99.8 7.8E-19 2.7E-23 165.9 19.4 202 71-311 11-224 (226)
41 2v1u_A Cell division control p 99.8 7.7E-19 2.6E-23 180.9 19.5 223 75-313 17-276 (387)
42 3u61_B DNA polymerase accessor 99.8 2.9E-19 9.9E-24 180.6 15.9 206 67-311 16-235 (324)
43 1g41_A Heat shock protein HSLU 99.8 2.1E-20 7.1E-25 194.6 7.0 171 75-253 12-189 (444)
44 3pvs_A Replication-associated 99.8 3.5E-19 1.2E-23 187.4 15.6 205 72-313 21-244 (447)
45 3hws_A ATP-dependent CLP prote 99.8 7.2E-19 2.5E-23 180.7 16.8 216 79-296 17-325 (363)
46 1l8q_A Chromosomal replication 99.8 1.9E-18 6.3E-23 174.7 19.2 196 73-292 7-214 (324)
47 1sxj_A Activator 1 95 kDa subu 99.8 6.1E-19 2.1E-23 189.5 15.2 229 65-312 27-273 (516)
48 1in4_A RUVB, holliday junction 99.8 1.5E-17 5E-22 169.0 24.4 215 72-314 20-251 (334)
49 1njg_A DNA polymerase III subu 99.8 4.2E-18 1.4E-22 162.9 18.7 204 70-310 16-248 (250)
50 2r44_A Uncharacterized protein 99.8 1.7E-18 5.9E-23 175.4 16.4 214 75-316 25-300 (331)
51 1g8p_A Magnesium-chelatase 38 99.8 3.7E-18 1.3E-22 173.9 18.2 218 72-316 19-325 (350)
52 1sxj_D Activator 1 41 kDa subu 99.8 2.9E-18 1E-22 174.8 16.4 216 65-311 25-261 (353)
53 3bos_A Putative DNA replicatio 99.8 1E-17 3.5E-22 160.8 18.7 205 73-311 24-241 (242)
54 2qby_B CDC6 homolog 3, cell di 99.8 9.1E-18 3.1E-22 173.1 18.7 213 76-314 19-271 (384)
55 3pxg_A Negative regulator of g 99.7 6.1E-18 2.1E-22 179.5 14.5 205 72-312 175-405 (468)
56 1r6b_X CLPA protein; AAA+, N-t 99.7 8.9E-18 3E-22 188.8 16.4 223 72-314 181-434 (758)
57 1jbk_A CLPB protein; beta barr 99.7 4.8E-18 1.6E-22 156.7 11.5 159 72-252 17-194 (195)
58 2chq_A Replication factor C sm 99.7 1.9E-17 6.5E-22 166.1 15.4 208 68-310 8-223 (319)
59 4fcw_A Chaperone protein CLPB; 99.7 8.6E-18 2.9E-22 168.4 12.6 203 76-293 16-278 (311)
60 2qby_A CDC6 homolog 1, cell di 99.7 6.7E-17 2.3E-21 166.1 19.2 224 74-314 17-273 (386)
61 1um8_A ATP-dependent CLP prote 99.7 2.6E-17 8.9E-22 169.8 16.0 230 78-309 22-361 (376)
62 3te6_A Regulatory protein SIR3 99.7 7E-18 2.4E-22 168.8 11.1 159 79-258 22-213 (318)
63 1sxj_B Activator 1 37 kDa subu 99.7 5.6E-17 1.9E-21 162.9 17.4 204 69-311 13-229 (323)
64 1fnn_A CDC6P, cell division co 99.7 1.6E-16 5.6E-21 163.7 21.0 220 75-314 15-275 (389)
65 1iqp_A RFCS; clamp loader, ext 99.7 9.8E-17 3.3E-21 161.4 17.5 209 67-310 15-231 (327)
66 1jr3_A DNA polymerase III subu 99.7 1.4E-16 4.8E-21 163.5 17.8 204 70-310 9-241 (373)
67 3pxi_A Negative regulator of g 99.7 6.4E-17 2.2E-21 181.7 16.1 190 72-297 175-389 (758)
68 3pxi_A Negative regulator of g 99.7 9.9E-17 3.4E-21 180.2 17.0 197 76-291 490-722 (758)
69 1qvr_A CLPB protein; coiled co 99.7 1.5E-16 5.1E-21 180.8 16.6 204 72-296 165-395 (854)
70 2p65_A Hypothetical protein PF 99.7 2.5E-17 8.5E-22 151.5 7.8 152 73-244 18-187 (187)
71 2bjv_A PSP operon transcriptio 99.7 1.1E-16 3.7E-21 157.0 12.8 205 74-306 3-250 (265)
72 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 7.5E-17 2.6E-21 171.3 10.7 210 77-314 22-286 (500)
73 1r6b_X CLPA protein; AAA+, N-t 99.7 3.9E-16 1.3E-20 175.4 15.1 198 77-291 458-713 (758)
74 1ojl_A Transcriptional regulat 99.7 3E-16 1E-20 157.1 12.4 202 77-307 2-246 (304)
75 1sxj_C Activator 1 40 kDa subu 99.7 6.7E-16 2.3E-20 157.1 15.0 211 66-310 14-236 (340)
76 1sxj_E Activator 1 40 kDa subu 99.7 8.3E-16 2.8E-20 156.8 15.1 193 68-291 5-242 (354)
77 3f9v_A Minichromosome maintena 99.6 1.6E-16 5.4E-21 173.0 7.1 219 77-313 295-587 (595)
78 1qvr_A CLPB protein; coiled co 99.6 3.5E-15 1.2E-19 169.6 13.1 202 76-292 557-818 (854)
79 1w5s_A Origin recognition comp 99.5 1.7E-13 5.9E-18 142.2 20.1 227 75-314 20-294 (412)
80 3n70_A Transport activator; si 99.5 3.4E-14 1.2E-18 126.3 10.2 112 78-221 2-116 (145)
81 3co5_A Putative two-component 99.5 1.5E-14 5E-19 128.3 6.7 112 78-221 5-116 (143)
82 1a5t_A Delta prime, HOLB; zinc 99.5 3.2E-13 1.1E-17 136.9 17.5 160 107-289 21-208 (334)
83 3k1j_A LON protease, ATP-depen 99.5 2.6E-13 9E-18 148.3 17.6 217 70-312 34-374 (604)
84 2gno_A DNA polymerase III, gam 99.4 1.8E-12 6.1E-17 129.5 13.0 142 81-256 1-152 (305)
85 1ny5_A Transcriptional regulat 99.4 1.6E-12 5.5E-17 134.4 11.4 204 76-309 136-383 (387)
86 3cmw_A Protein RECA, recombina 99.4 8.2E-13 2.8E-17 156.0 9.9 151 70-221 1013-1218(1706)
87 3kw6_A 26S protease regulatory 99.3 6.8E-12 2.3E-16 99.0 9.3 75 241-315 1-75 (78)
88 2krk_A 26S protease regulatory 99.3 8.8E-12 3E-16 100.0 8.9 78 239-316 7-84 (86)
89 4akg_A Glutathione S-transfera 99.3 4.4E-11 1.5E-15 147.2 16.8 137 111-258 1268-1433(2695)
90 3vlf_B 26S protease regulatory 99.2 2.4E-11 8E-16 98.1 8.9 78 244-321 2-79 (88)
91 3ec2_A DNA replication protein 99.2 4.3E-11 1.5E-15 109.8 9.6 133 73-222 6-144 (180)
92 3dzd_A Transcriptional regulat 99.1 1.2E-10 4.2E-15 119.4 10.9 190 77-292 129-360 (368)
93 3f8t_A Predicted ATPase involv 99.1 2.1E-10 7.3E-15 118.7 12.4 213 78-314 214-484 (506)
94 2w58_A DNAI, primosome compone 99.1 2.7E-10 9.2E-15 106.4 11.2 104 72-182 20-128 (202)
95 3aji_B S6C, proteasome (prosom 99.0 4E-10 1.4E-14 89.8 7.6 73 244-316 2-74 (83)
96 2fna_A Conserved hypothetical 99.0 2.8E-08 9.7E-13 100.2 21.2 185 75-288 11-252 (357)
97 2qen_A Walker-type ATPase; unk 99.0 7.5E-08 2.6E-12 96.9 22.2 188 75-287 10-247 (350)
98 2dzn_B 26S protease regulatory 98.9 3.7E-10 1.3E-14 89.8 3.5 72 246-317 1-72 (82)
99 2kjq_A DNAA-related protein; s 98.9 7E-10 2.4E-14 98.7 5.3 102 110-239 36-144 (149)
100 2vhj_A Ntpase P4, P4; non- hyd 98.9 5.6E-10 1.9E-14 110.7 4.6 116 110-228 123-242 (331)
101 2qgz_A Helicase loader, putati 98.9 4.9E-09 1.7E-13 104.8 9.5 101 73-181 120-226 (308)
102 2r2a_A Uncharacterized protein 98.8 3.3E-09 1.1E-13 99.0 6.5 129 109-246 4-156 (199)
103 4akg_A Glutathione S-transfera 98.7 1.9E-07 6.5E-12 115.4 18.0 164 111-292 646-839 (2695)
104 1svm_A Large T antigen; AAA+ f 98.6 4.4E-08 1.5E-12 100.2 7.1 120 105-242 164-284 (377)
105 3cmu_A Protein RECA, recombina 98.5 1.7E-07 5.9E-12 112.3 9.8 113 106-218 1423-1561(2050)
106 3vkg_A Dynein heavy chain, cyt 98.5 6.9E-07 2.4E-11 111.1 14.1 136 111-257 1305-1470(3245)
107 1jr3_D DNA polymerase III, del 98.5 1.3E-06 4.6E-11 88.1 13.5 176 109-312 17-208 (343)
108 1tue_A Replication protein E1; 98.5 2.8E-07 9.6E-12 85.4 7.6 29 111-139 59-87 (212)
109 2c9o_A RUVB-like 1; hexameric 98.4 5.4E-07 1.9E-11 94.9 10.2 128 170-313 296-437 (456)
110 1u0j_A DNA replication protein 98.2 2.5E-06 8.6E-11 82.5 8.3 27 110-136 104-130 (267)
111 1ye8_A Protein THEP1, hypothet 98.2 6E-06 2E-10 75.4 10.1 28 112-139 2-29 (178)
112 3vkg_A Dynein heavy chain, cyt 98.2 7.7E-06 2.6E-10 102.0 13.5 125 112-253 606-750 (3245)
113 1z6t_A APAF-1, apoptotic prote 98.1 9.8E-05 3.4E-09 79.9 18.3 178 73-286 120-328 (591)
114 2cvh_A DNA repair and recombin 98.0 1.7E-05 6E-10 74.1 10.2 39 107-145 17-55 (220)
115 2w0m_A SSO2452; RECA, SSPF, un 98.0 1.7E-05 5.7E-10 74.7 9.5 35 109-143 22-59 (235)
116 1xp8_A RECA protein, recombina 97.9 2.9E-05 9.9E-10 79.0 10.3 113 107-219 71-209 (366)
117 3upu_A ATP-dependent DNA helic 97.9 3.7E-05 1.3E-09 80.8 10.8 131 65-220 12-166 (459)
118 3sfz_A APAF-1, apoptotic pepti 97.9 0.00019 6.7E-09 84.1 17.9 178 72-285 119-327 (1249)
119 1n0w_A DNA repair protein RAD5 97.9 2.8E-05 9.5E-10 73.8 8.5 114 108-221 22-174 (243)
120 2zr9_A Protein RECA, recombina 97.8 2.3E-05 7.9E-10 79.3 7.6 76 108-183 59-153 (349)
121 3hr8_A Protein RECA; alpha and 97.8 5.6E-05 1.9E-09 76.5 10.1 110 108-217 59-194 (356)
122 2ehv_A Hypothetical protein PH 97.8 0.00011 3.7E-09 70.0 11.6 112 108-224 28-185 (251)
123 2z43_A DNA repair and recombin 97.8 2.7E-05 9.2E-10 78.0 6.7 112 107-218 104-255 (324)
124 1qhx_A CPT, protein (chloramph 97.8 1.9E-05 6.7E-10 71.3 5.0 38 110-147 3-40 (178)
125 1u94_A RECA protein, recombina 97.7 5.4E-05 1.8E-09 76.8 8.2 77 107-183 60-155 (356)
126 3cmu_A Protein RECA, recombina 97.7 5.5E-05 1.9E-09 91.0 9.1 79 106-184 1077-1174(2050)
127 1v5w_A DMC1, meiotic recombina 97.7 8.8E-05 3E-09 74.9 8.6 112 108-219 120-272 (343)
128 2r8r_A Sensor protein; KDPD, P 97.6 0.00054 1.9E-08 64.4 12.5 162 111-294 7-209 (228)
129 1gvn_B Zeta; postsegregational 97.6 0.00021 7.3E-09 70.2 10.2 60 83-146 10-69 (287)
130 3io5_A Recombination and repai 97.6 0.00019 6.5E-09 70.9 9.6 106 112-217 30-168 (333)
131 2dr3_A UPF0273 protein PH0284; 97.6 0.0004 1.4E-08 65.8 11.7 38 107-144 20-60 (247)
132 1g41_A Heat shock protein HSLU 97.6 0.00058 2E-08 70.9 13.5 149 158-310 241-430 (444)
133 3trf_A Shikimate kinase, SK; a 97.6 4.3E-05 1.5E-09 69.5 4.1 32 110-141 5-36 (185)
134 4a74_A DNA repair and recombin 97.6 9.3E-05 3.2E-09 69.5 6.6 26 109-134 24-49 (231)
135 2p5t_B PEZT; postsegregational 97.5 0.00024 8.3E-09 68.3 9.3 40 107-146 29-68 (253)
136 3lda_A DNA repair protein RAD5 97.5 0.00017 5.9E-09 74.1 8.4 112 109-220 177-327 (400)
137 1pzn_A RAD51, DNA repair and r 97.5 0.00019 6.7E-09 72.5 8.2 37 109-145 130-175 (349)
138 2a5y_B CED-4; apoptosis; HET: 97.5 0.0013 4.4E-08 70.6 15.0 170 80-283 131-334 (549)
139 2rhm_A Putative kinase; P-loop 97.5 9.3E-05 3.2E-09 67.5 5.0 33 108-140 3-35 (193)
140 3vaa_A Shikimate kinase, SK; s 97.5 7.1E-05 2.4E-09 69.2 4.2 33 109-141 24-56 (199)
141 1nlf_A Regulatory protein REPA 97.4 0.00048 1.6E-08 67.1 10.1 25 109-133 29-53 (279)
142 2zts_A Putative uncharacterize 97.4 0.00069 2.4E-08 64.2 10.9 38 107-144 27-68 (251)
143 2i1q_A DNA repair and recombin 97.4 0.00012 4.1E-09 73.1 5.5 110 108-217 96-255 (322)
144 2r6a_A DNAB helicase, replicat 97.4 0.00062 2.1E-08 71.3 10.9 39 106-144 199-241 (454)
145 2b8t_A Thymidine kinase; deoxy 97.4 0.00027 9.3E-09 66.7 7.3 69 112-181 14-101 (223)
146 3e1s_A Exodeoxyribonuclease V, 97.4 0.00025 8.6E-09 76.5 7.7 97 111-220 205-317 (574)
147 2iyv_A Shikimate kinase, SK; t 97.4 0.0001 3.5E-09 67.0 3.8 30 112-141 4-33 (184)
148 2orw_A Thymidine kinase; TMTK, 97.3 0.0001 3.5E-09 67.5 3.4 30 112-141 5-37 (184)
149 3iij_A Coilin-interacting nucl 97.3 0.00014 4.7E-09 65.9 4.1 32 110-141 11-42 (180)
150 3kb2_A SPBC2 prophage-derived 97.3 0.00015 5E-09 64.8 4.3 31 112-142 3-33 (173)
151 3dm5_A SRP54, signal recogniti 97.3 0.0019 6.6E-08 66.9 13.2 73 109-181 99-194 (443)
152 1zp6_A Hypothetical protein AT 97.3 0.00018 6.2E-09 65.6 4.9 39 108-146 7-45 (191)
153 1y63_A LMAJ004144AAA protein; 97.3 0.00013 4.4E-09 66.5 3.8 31 110-140 10-41 (184)
154 2cdn_A Adenylate kinase; phosp 97.3 0.00017 5.7E-09 66.6 4.6 34 108-141 18-51 (201)
155 1zuh_A Shikimate kinase; alpha 97.3 0.00015 5E-09 64.9 3.9 31 111-141 8-38 (168)
156 1kag_A SKI, shikimate kinase I 97.3 0.00017 5.9E-09 64.6 4.3 31 110-140 4-34 (173)
157 1via_A Shikimate kinase; struc 97.3 0.00016 5.6E-09 65.1 4.1 29 112-140 6-34 (175)
158 3a4m_A L-seryl-tRNA(SEC) kinas 97.3 0.00056 1.9E-08 66.0 8.0 38 110-147 4-44 (260)
159 2q6t_A DNAB replication FORK h 97.2 0.0011 3.7E-08 69.3 10.7 39 106-144 196-238 (444)
160 1qf9_A UMP/CMP kinase, protein 97.2 0.00017 6E-09 65.6 4.0 34 108-141 4-37 (194)
161 2fz4_A DNA repair protein RAD2 97.2 0.0016 5.4E-08 61.9 10.9 33 112-144 110-142 (237)
162 1cr0_A DNA primase/helicase; R 97.2 0.00063 2.2E-08 66.8 8.0 38 106-143 31-72 (296)
163 3crm_A TRNA delta(2)-isopenten 97.2 0.00032 1.1E-08 69.7 5.7 36 110-145 5-40 (323)
164 1ly1_A Polynucleotide kinase; 97.2 0.00018 6.2E-09 64.7 3.5 30 110-139 2-32 (181)
165 1vma_A Cell division protein F 97.2 0.0018 6.1E-08 64.1 11.0 39 107-145 101-142 (306)
166 3t61_A Gluconokinase; PSI-biol 97.2 0.00027 9.1E-09 65.3 4.5 31 110-140 18-48 (202)
167 1tev_A UMP-CMP kinase; ploop, 97.2 0.00019 6.6E-09 65.4 3.5 31 110-140 3-33 (196)
168 2c95_A Adenylate kinase 1; tra 97.1 0.00023 7.7E-09 65.1 3.8 32 110-141 9-40 (196)
169 2ze6_A Isopentenyl transferase 97.1 0.00027 9.1E-09 68.1 4.3 32 112-143 3-34 (253)
170 1e6c_A Shikimate kinase; phosp 97.1 0.00024 8.2E-09 63.6 3.7 30 111-140 3-32 (173)
171 2pez_A Bifunctional 3'-phospho 97.1 0.00034 1.2E-08 63.2 4.6 37 109-145 4-43 (179)
172 3bh0_A DNAB-like replicative h 97.1 0.0024 8.3E-08 63.4 11.2 38 106-143 64-104 (315)
173 3lw7_A Adenylate kinase relate 97.1 0.00022 7.6E-09 63.5 3.2 29 112-141 3-31 (179)
174 2vli_A Antibiotic resistance p 97.1 0.00024 8.3E-09 64.2 3.4 30 110-139 5-34 (183)
175 1aky_A Adenylate kinase; ATP:A 97.1 0.00034 1.2E-08 65.5 4.5 32 110-141 4-35 (220)
176 3jvv_A Twitching mobility prot 97.1 0.001 3.5E-08 67.3 8.2 95 112-223 125-233 (356)
177 1g5t_A COB(I)alamin adenosyltr 97.1 0.003 1E-07 58.0 10.5 115 112-240 30-177 (196)
178 3cm0_A Adenylate kinase; ATP-b 97.1 0.00028 9.6E-09 64.0 3.6 30 111-140 5-34 (186)
179 1zd8_A GTP:AMP phosphotransfer 97.1 0.00028 9.6E-09 66.5 3.6 33 109-141 6-38 (227)
180 3be4_A Adenylate kinase; malar 97.1 0.00024 8.2E-09 66.5 3.2 31 111-141 6-36 (217)
181 2bwj_A Adenylate kinase 5; pho 97.1 0.00028 9.6E-09 64.6 3.5 32 110-141 12-43 (199)
182 2ius_A DNA translocase FTSK; n 97.0 0.0019 6.4E-08 68.3 10.0 75 170-253 297-374 (512)
183 1ukz_A Uridylate kinase; trans 97.0 0.00035 1.2E-08 64.4 4.0 33 109-141 14-46 (203)
184 3tlx_A Adenylate kinase 2; str 97.0 0.00031 1.1E-08 67.1 3.8 33 109-141 28-60 (243)
185 3dl0_A Adenylate kinase; phosp 97.0 0.00033 1.1E-08 65.3 3.8 30 112-141 2-31 (216)
186 2iut_A DNA translocase FTSK; n 97.0 0.0021 7.2E-08 68.5 10.3 74 171-253 345-420 (574)
187 3kl4_A SRP54, signal recogniti 97.0 0.0026 8.9E-08 65.8 10.6 73 109-181 96-191 (433)
188 2pt5_A Shikimate kinase, SK; a 97.0 0.00036 1.2E-08 62.1 3.6 29 112-140 2-30 (168)
189 2i3b_A HCR-ntpase, human cance 97.0 0.00094 3.2E-08 61.3 6.4 23 112-134 3-25 (189)
190 3fb4_A Adenylate kinase; psych 97.0 0.00036 1.2E-08 65.0 3.7 30 112-141 2-31 (216)
191 1kht_A Adenylate kinase; phosp 97.0 0.00038 1.3E-08 63.2 3.7 25 111-135 4-28 (192)
192 3umf_A Adenylate kinase; rossm 97.0 0.00046 1.6E-08 64.8 4.2 39 108-148 27-65 (217)
193 1ak2_A Adenylate kinase isoenz 97.0 0.00053 1.8E-08 64.9 4.7 32 110-141 16-47 (233)
194 4eun_A Thermoresistant glucoki 97.0 0.00057 1.9E-08 63.0 4.5 32 109-140 28-59 (200)
195 1zak_A Adenylate kinase; ATP:A 96.9 0.00042 1.4E-08 65.0 3.6 32 109-140 4-35 (222)
196 1knq_A Gluconate kinase; ALFA/ 96.9 0.00061 2.1E-08 61.1 4.4 30 111-140 9-38 (175)
197 2px0_A Flagellar biosynthesis 96.9 0.0074 2.5E-07 59.3 12.1 37 109-145 104-144 (296)
198 1ex7_A Guanylate kinase; subst 96.9 0.00095 3.3E-08 61.1 5.2 24 111-134 2-25 (186)
199 3cmw_A Protein RECA, recombina 96.8 0.0028 9.5E-08 75.6 10.1 111 108-218 1427-1565(1706)
200 3sr0_A Adenylate kinase; phosp 96.8 0.00069 2.4E-08 63.1 4.0 34 112-147 2-35 (206)
201 1e4v_A Adenylate kinase; trans 96.8 0.00062 2.1E-08 63.5 3.6 30 112-141 2-31 (214)
202 4gp7_A Metallophosphoesterase; 96.8 0.0013 4.4E-08 59.1 5.5 20 110-129 9-28 (171)
203 2eyu_A Twitching motility prot 96.8 0.0012 4E-08 63.9 5.4 69 111-179 26-108 (261)
204 3uie_A Adenylyl-sulfate kinase 96.8 0.001 3.6E-08 61.2 4.9 37 109-145 24-63 (200)
205 2pbr_A DTMP kinase, thymidylat 96.8 0.001 3.6E-08 60.4 4.7 31 112-142 2-35 (195)
206 2ga8_A Hypothetical 39.9 kDa p 96.8 0.0004 1.4E-08 69.8 2.0 29 112-140 26-54 (359)
207 2v54_A DTMP kinase, thymidylat 96.7 0.0011 3.7E-08 60.9 4.6 34 110-143 4-38 (204)
208 2pt7_A CAG-ALFA; ATPase, prote 96.7 0.00094 3.2E-08 66.9 4.5 70 111-180 172-251 (330)
209 1cke_A CK, MSSA, protein (cyti 96.7 0.00098 3.3E-08 62.4 4.3 30 111-140 6-35 (227)
210 1tf7_A KAIC; homohexamer, hexa 96.7 0.01 3.5E-07 63.3 12.6 108 108-221 279-417 (525)
211 3bgw_A DNAB-like replicative h 96.7 0.006 2E-07 63.6 10.4 39 106-144 193-234 (444)
212 1q57_A DNA primase/helicase; d 96.7 0.0064 2.2E-07 64.4 10.7 39 106-144 238-280 (503)
213 1vt4_I APAF-1 related killer D 96.7 0.0075 2.6E-07 68.5 11.5 43 80-133 131-173 (1221)
214 2if2_A Dephospho-COA kinase; a 96.7 0.00081 2.8E-08 62.0 3.2 29 112-141 3-31 (204)
215 2jaq_A Deoxyguanosine kinase; 96.7 0.00099 3.4E-08 61.1 3.8 29 112-140 2-30 (205)
216 3ake_A Cytidylate kinase; CMP 96.7 0.0014 4.7E-08 60.4 4.7 30 112-141 4-33 (208)
217 2xb4_A Adenylate kinase; ATP-b 96.6 0.0011 3.7E-08 62.4 4.0 29 112-140 2-30 (223)
218 1nks_A Adenylate kinase; therm 96.6 0.00067 2.3E-08 61.6 2.4 34 112-145 3-39 (194)
219 2z0h_A DTMP kinase, thymidylat 96.6 0.0014 4.9E-08 59.7 4.6 31 113-143 3-36 (197)
220 1uf9_A TT1252 protein; P-loop, 96.6 0.0012 4.2E-08 60.5 4.1 30 110-140 8-37 (203)
221 3r20_A Cytidylate kinase; stru 96.6 0.0013 4.5E-08 62.3 4.4 31 110-140 9-39 (233)
222 2ewv_A Twitching motility prot 96.6 0.002 6.7E-08 65.7 5.9 72 108-179 134-219 (372)
223 1uj2_A Uridine-cytidine kinase 96.6 0.0018 6E-08 62.1 5.0 40 109-148 21-68 (252)
224 1jjv_A Dephospho-COA kinase; P 96.6 0.0014 4.7E-08 60.5 4.1 28 112-140 4-31 (206)
225 3rlf_A Maltose/maltodextrin im 96.5 0.0036 1.2E-07 63.7 7.1 24 111-134 30-53 (381)
226 3foz_A TRNA delta(2)-isopenten 96.5 0.0016 5.4E-08 64.2 4.3 38 109-146 9-46 (316)
227 3nwj_A ATSK2; P loop, shikimat 96.5 0.0016 5.4E-08 62.5 4.1 31 111-141 49-79 (250)
228 3a8t_A Adenylate isopentenyltr 96.5 0.0015 5E-08 65.3 4.0 36 110-145 40-75 (339)
229 2bbw_A Adenylate kinase 4, AK4 96.5 0.0018 6.1E-08 61.7 4.5 31 110-140 27-57 (246)
230 4g1u_C Hemin import ATP-bindin 96.5 0.0084 2.9E-07 58.0 9.2 24 111-134 38-61 (266)
231 2grj_A Dephospho-COA kinase; T 96.5 0.0014 4.7E-08 60.3 3.3 35 112-148 14-48 (192)
232 2wwf_A Thymidilate kinase, put 96.5 0.00084 2.9E-08 62.1 1.8 29 109-137 9-37 (212)
233 1w36_D RECD, exodeoxyribonucle 96.5 0.0067 2.3E-07 65.9 9.2 23 111-133 165-187 (608)
234 2plr_A DTMP kinase, probable t 96.4 0.0018 6.1E-08 59.7 4.0 32 110-141 4-37 (213)
235 2qor_A Guanylate kinase; phosp 96.4 0.0023 7.7E-08 59.1 4.7 27 109-135 11-37 (204)
236 1nn5_A Similar to deoxythymidy 96.4 0.001 3.4E-08 61.7 2.0 27 109-135 8-34 (215)
237 4a1f_A DNAB helicase, replicat 96.4 0.0023 8E-08 64.1 4.7 38 106-143 42-82 (338)
238 1w4r_A Thymidine kinase; type 96.4 0.006 2E-07 55.9 7.0 69 111-181 21-103 (195)
239 3gfo_A Cobalt import ATP-bindi 96.4 0.0064 2.2E-07 59.1 7.7 24 111-134 35-58 (275)
240 3fvq_A Fe(3+) IONS import ATP- 96.4 0.0074 2.5E-07 60.9 8.3 24 111-134 31-54 (359)
241 3b6e_A Interferon-induced heli 96.3 0.011 3.7E-07 54.3 8.7 23 111-133 49-71 (216)
242 2yvu_A Probable adenylyl-sulfa 96.3 0.0032 1.1E-07 57.1 4.9 36 109-144 12-50 (186)
243 1tf7_A KAIC; homohexamer, hexa 96.3 0.015 5E-07 62.0 10.6 111 109-224 38-188 (525)
244 1vht_A Dephospho-COA kinase; s 96.3 0.0029 1E-07 58.9 4.6 31 110-141 4-34 (218)
245 1ltq_A Polynucleotide kinase; 96.3 0.0022 7.4E-08 63.0 3.7 30 110-139 2-32 (301)
246 2h92_A Cytidylate kinase; ross 96.3 0.0028 9.7E-08 59.0 4.3 32 110-141 3-34 (219)
247 2qt1_A Nicotinamide riboside k 96.3 0.0021 7.2E-08 59.4 3.4 31 110-140 21-52 (207)
248 3zvl_A Bifunctional polynucleo 96.3 0.0039 1.3E-07 64.5 5.7 32 109-140 257-288 (416)
249 1kgd_A CASK, peripheral plasma 96.3 0.0028 9.6E-08 57.3 4.1 25 111-135 6-30 (180)
250 1m7g_A Adenylylsulfate kinase; 96.2 0.0028 9.4E-08 58.9 4.0 38 109-146 24-65 (211)
251 4e22_A Cytidylate kinase; P-lo 96.2 0.0031 1.1E-07 60.5 4.5 30 111-140 28-57 (252)
252 1q3t_A Cytidylate kinase; nucl 96.2 0.0035 1.2E-07 59.3 4.7 32 109-140 15-46 (236)
253 1v43_A Sugar-binding transport 96.2 0.0093 3.2E-07 60.5 7.8 24 111-134 38-61 (372)
254 2f6r_A COA synthase, bifunctio 96.2 0.0025 8.6E-08 62.2 3.5 30 110-140 75-104 (281)
255 1z47_A CYSA, putative ABC-tran 96.2 0.0088 3E-07 60.3 7.5 24 111-134 42-65 (355)
256 2yyz_A Sugar ABC transporter, 96.2 0.014 4.9E-07 58.8 9.0 24 111-134 30-53 (359)
257 3exa_A TRNA delta(2)-isopenten 96.1 0.0031 1.1E-07 62.2 4.0 34 111-144 4-37 (322)
258 2it1_A 362AA long hypothetical 96.1 0.013 4.5E-07 59.2 8.7 24 111-134 30-53 (362)
259 3d3q_A TRNA delta(2)-isopenten 96.1 0.0032 1.1E-07 63.0 4.0 33 111-143 8-40 (340)
260 3tui_C Methionine import ATP-b 96.1 0.015 5.2E-07 58.7 8.9 24 111-134 55-78 (366)
261 1xx6_A Thymidine kinase; NESG, 96.1 0.0057 1.9E-07 56.1 5.3 70 111-181 9-93 (191)
262 1x6v_B Bifunctional 3'-phospho 96.1 0.01 3.5E-07 64.1 8.0 38 109-146 51-91 (630)
263 2j41_A Guanylate kinase; GMP, 96.1 0.0036 1.2E-07 57.5 3.9 26 109-134 5-30 (207)
264 1t6n_A Probable ATP-dependent 96.1 0.076 2.6E-06 49.0 13.2 58 74-133 14-74 (220)
265 3tau_A Guanylate kinase, GMP k 96.1 0.0036 1.2E-07 58.0 3.9 26 110-135 8-33 (208)
266 3llm_A ATP-dependent RNA helic 96.1 0.026 8.9E-07 53.1 10.0 21 111-131 77-97 (235)
267 1rz3_A Hypothetical protein rb 96.0 0.012 4.1E-07 54.1 7.2 37 109-145 21-60 (201)
268 2qmh_A HPR kinase/phosphorylas 96.0 0.0027 9.1E-08 58.4 2.6 32 110-142 34-65 (205)
269 2bdt_A BH3686; alpha-beta prot 96.0 0.0043 1.5E-07 56.3 4.1 33 112-145 4-36 (189)
270 2v3c_C SRP54, signal recogniti 96.0 0.021 7.2E-07 59.2 9.6 36 109-144 98-136 (432)
271 3fdi_A Uncharacterized protein 96.0 0.0046 1.6E-07 57.1 4.1 29 112-140 8-36 (201)
272 3e70_C DPA, signal recognition 96.0 0.034 1.2E-06 55.4 10.7 27 108-134 127-153 (328)
273 2axn_A 6-phosphofructo-2-kinas 96.0 0.014 4.9E-07 62.0 8.4 39 109-147 34-75 (520)
274 3c8u_A Fructokinase; YP_612366 95.9 0.0075 2.6E-07 55.8 5.3 27 109-135 21-47 (208)
275 3a00_A Guanylate kinase, GMP k 95.9 0.0047 1.6E-07 56.1 3.6 24 111-134 2-25 (186)
276 3asz_A Uridine kinase; cytidin 95.8 0.0048 1.6E-07 57.0 3.4 30 110-139 6-37 (211)
277 2yhs_A FTSY, cell division pro 95.8 0.035 1.2E-06 58.2 10.1 28 107-134 290-317 (503)
278 3eph_A TRNA isopentenyltransfe 95.8 0.0054 1.8E-07 62.6 3.9 34 110-143 2-35 (409)
279 3tr0_A Guanylate kinase, GMP k 95.8 0.0061 2.1E-07 55.8 4.0 24 111-134 8-31 (205)
280 1zu4_A FTSY; GTPase, signal re 95.7 0.03 1E-06 55.6 9.1 39 107-145 102-143 (320)
281 3thx_B DNA mismatch repair pro 95.7 0.021 7.2E-07 64.5 8.8 23 110-132 673-695 (918)
282 1ls1_A Signal recognition part 95.7 0.061 2.1E-06 52.7 11.1 35 109-143 97-134 (295)
283 1c9k_A COBU, adenosylcobinamid 95.7 0.0075 2.6E-07 54.6 4.2 32 113-145 2-33 (180)
284 1p9r_A General secretion pathw 95.6 0.029 9.8E-07 57.9 8.8 94 73-179 143-246 (418)
285 2gxq_A Heat resistant RNA depe 95.6 0.051 1.8E-06 49.5 9.8 18 111-128 39-56 (207)
286 2xxa_A Signal recognition part 95.6 0.12 3.9E-06 53.6 13.4 72 108-179 98-193 (433)
287 3ney_A 55 kDa erythrocyte memb 95.6 0.011 3.8E-07 54.4 5.0 27 109-135 18-44 (197)
288 1lvg_A Guanylate kinase, GMP k 95.6 0.0063 2.2E-07 55.9 3.3 25 110-134 4-28 (198)
289 2j37_W Signal recognition part 95.6 0.068 2.3E-06 56.3 11.6 36 108-143 99-137 (504)
290 1hv8_A Putative ATP-dependent 95.5 0.067 2.3E-06 53.1 11.0 68 74-143 6-82 (367)
291 2j9r_A Thymidine kinase; TK1, 95.5 0.016 5.5E-07 53.8 5.7 31 112-142 30-63 (214)
292 1j8m_F SRP54, signal recogniti 95.4 0.054 1.9E-06 53.1 9.4 36 110-145 98-136 (297)
293 3b9q_A Chloroplast SRP recepto 95.4 0.02 7E-07 56.3 6.3 28 107-134 97-124 (302)
294 1z6g_A Guanylate kinase; struc 95.3 0.0098 3.4E-07 55.6 3.7 25 110-134 23-47 (218)
295 4b3f_X DNA-binding protein smu 95.3 0.084 2.9E-06 57.6 11.6 34 112-145 207-243 (646)
296 2xau_A PRE-mRNA-splicing facto 95.3 0.047 1.6E-06 60.8 9.6 23 111-133 110-132 (773)
297 3gmt_A Adenylate kinase; ssgci 95.3 0.012 4.1E-07 55.4 4.1 29 112-140 10-38 (230)
298 3vkw_A Replicase large subunit 95.3 0.045 1.5E-06 56.5 8.7 24 110-133 161-184 (446)
299 1qde_A EIF4A, translation init 95.3 0.079 2.7E-06 49.0 9.8 53 72-126 12-67 (224)
300 2oap_1 GSPE-2, type II secreti 95.2 0.012 4E-07 62.4 4.4 69 111-179 261-343 (511)
301 3tqf_A HPR(Ser) kinase; transf 95.2 0.013 4.5E-07 52.5 4.0 28 111-139 17-44 (181)
302 3hdt_A Putative kinase; struct 95.2 0.011 3.6E-07 55.7 3.6 29 112-140 16-44 (223)
303 3tqc_A Pantothenate kinase; bi 95.2 0.038 1.3E-06 54.9 7.7 28 108-135 90-117 (321)
304 1htw_A HI0065; nucleotide-bind 95.2 0.013 4.5E-07 51.9 4.0 24 111-134 34-57 (158)
305 1odf_A YGR205W, hypothetical 3 95.2 0.0082 2.8E-07 58.8 2.9 28 108-135 29-56 (290)
306 2pl3_A Probable ATP-dependent 95.2 0.088 3E-06 49.2 10.0 53 73-127 24-79 (236)
307 4a82_A Cystic fibrosis transme 95.1 0.069 2.4E-06 57.5 10.0 26 109-134 366-391 (578)
308 3thx_A DNA mismatch repair pro 95.1 0.047 1.6E-06 61.9 8.8 22 111-132 663-684 (934)
309 2og2_A Putative signal recogni 95.0 0.028 9.4E-07 56.7 6.2 28 107-134 154-181 (359)
310 1gtv_A TMK, thymidylate kinase 95.0 0.0065 2.2E-07 56.1 1.5 24 112-135 2-25 (214)
311 1znw_A Guanylate kinase, GMP k 95.0 0.014 4.9E-07 53.8 3.8 25 111-135 21-45 (207)
312 2jeo_A Uridine-cytidine kinase 95.0 0.014 4.9E-07 55.4 3.8 27 111-137 26-52 (245)
313 1s96_A Guanylate kinase, GMP k 95.0 0.015 5.2E-07 54.4 3.9 26 110-135 16-41 (219)
314 1a7j_A Phosphoribulokinase; tr 95.0 0.0097 3.3E-07 58.3 2.6 37 111-147 6-45 (290)
315 3p32_A Probable GTPase RV1496/ 95.0 0.1 3.6E-06 52.4 10.3 33 110-142 79-114 (355)
316 2v9p_A Replication protein E1; 94.9 0.016 5.5E-07 57.1 4.1 32 107-138 123-154 (305)
317 3lnc_A Guanylate kinase, GMP k 94.9 0.01 3.6E-07 55.7 2.6 25 110-134 27-52 (231)
318 1m8p_A Sulfate adenylyltransfe 94.9 0.015 5.2E-07 62.5 4.1 38 109-146 395-436 (573)
319 4eaq_A DTMP kinase, thymidylat 94.9 0.018 6E-07 54.3 4.0 32 110-141 26-59 (229)
320 3qf4_B Uncharacterized ABC tra 94.8 0.11 3.7E-06 56.2 10.5 27 108-134 379-405 (598)
321 2ffh_A Protein (FFH); SRP54, s 94.8 0.38 1.3E-05 49.5 14.0 36 109-144 97-135 (425)
322 1xti_A Probable ATP-dependent 94.8 0.41 1.4E-05 47.9 14.2 57 74-132 8-67 (391)
323 1np6_A Molybdopterin-guanine d 94.8 0.019 6.6E-07 51.7 3.8 25 110-134 6-30 (174)
324 4f4c_A Multidrug resistance pr 94.7 0.053 1.8E-06 64.1 8.4 27 108-134 442-468 (1321)
325 2orv_A Thymidine kinase; TP4A 94.7 0.12 4E-06 48.6 9.1 91 111-220 20-125 (234)
326 3ozx_A RNAse L inhibitor; ATP 94.7 0.072 2.5E-06 56.7 8.7 24 111-134 295-318 (538)
327 1wb9_A DNA mismatch repair pro 94.7 0.12 4.2E-06 57.6 10.9 24 110-133 607-630 (800)
328 3bor_A Human initiation factor 94.6 0.11 3.8E-06 48.7 9.0 55 72-128 28-85 (237)
329 1rj9_A FTSY, signal recognitio 94.4 0.026 8.7E-07 55.7 4.1 26 109-134 101-126 (304)
330 1vec_A ATP-dependent RNA helic 94.4 0.18 6.3E-06 45.7 9.7 18 111-128 41-58 (206)
331 3fe2_A Probable ATP-dependent 94.4 0.2 6.8E-06 47.0 10.2 18 111-128 67-84 (242)
332 2fwr_A DNA repair protein RAD2 94.4 0.1 3.4E-06 54.3 8.9 33 112-144 110-142 (472)
333 1bif_A 6-phosphofructo-2-kinas 94.3 0.09 3.1E-06 55.0 8.3 35 109-143 38-75 (469)
334 2ocp_A DGK, deoxyguanosine kin 94.3 0.028 9.7E-07 53.1 4.0 26 110-135 2-27 (241)
335 1sq5_A Pantothenate kinase; P- 94.3 0.025 8.7E-07 55.7 3.7 27 109-135 79-105 (308)
336 2ged_A SR-beta, signal recogni 94.2 0.047 1.6E-06 49.1 5.2 25 110-134 48-72 (193)
337 1p5z_B DCK, deoxycytidine kina 94.2 0.014 4.8E-07 56.1 1.7 27 109-135 23-49 (263)
338 3aez_A Pantothenate kinase; tr 94.2 0.03 1E-06 55.4 4.0 27 108-134 88-114 (312)
339 1xjc_A MOBB protein homolog; s 94.2 0.029 1E-06 50.2 3.6 32 111-142 5-39 (169)
340 4f4c_A Multidrug resistance pr 94.2 0.05 1.7E-06 64.3 6.6 25 110-134 1105-1129(1321)
341 1wp9_A ATP-dependent RNA helic 94.2 0.17 5.8E-06 51.9 10.1 33 112-144 25-61 (494)
342 3cr8_A Sulfate adenylyltranfer 94.2 0.066 2.3E-06 57.1 6.9 38 110-147 369-410 (552)
343 1q0u_A Bstdead; DEAD protein, 94.2 0.17 5.7E-06 46.7 9.0 18 111-128 42-59 (219)
344 3qf4_A ABC transporter, ATP-bi 94.2 0.18 6.1E-06 54.3 10.4 27 108-134 367-393 (587)
345 1s2m_A Putative ATP-dependent 94.1 0.31 1E-05 49.1 11.6 57 73-131 20-79 (400)
346 2z0m_A 337AA long hypothetical 93.9 0.12 4E-06 50.7 7.7 33 111-143 32-64 (337)
347 3lxw_A GTPase IMAP family memb 93.9 0.12 4E-06 49.1 7.4 24 110-133 21-44 (247)
348 2p6r_A Afuhel308 helicase; pro 93.8 0.14 4.9E-06 56.3 9.1 33 111-143 41-76 (702)
349 3tif_A Uncharacterized ABC tra 93.8 0.023 8E-07 53.7 2.4 26 110-135 31-56 (235)
350 1ewq_A DNA mismatch repair pro 93.8 0.13 4.4E-06 57.1 8.5 23 111-133 577-599 (765)
351 3pey_A ATP-dependent RNA helic 93.8 0.35 1.2E-05 48.3 11.2 21 110-130 44-64 (395)
352 2onk_A Molybdate/tungstate ABC 93.7 0.031 1E-06 53.1 2.9 24 111-134 25-48 (240)
353 4i1u_A Dephospho-COA kinase; s 93.7 0.038 1.3E-06 51.3 3.5 29 112-141 11-39 (210)
354 2cbz_A Multidrug resistance-as 93.7 0.026 8.7E-07 53.5 2.4 26 109-134 30-55 (237)
355 3kta_A Chromosome segregation 93.7 0.042 1.5E-06 49.1 3.8 24 112-135 28-51 (182)
356 2pcj_A ABC transporter, lipopr 93.7 0.026 8.7E-07 53.0 2.3 24 111-134 31-54 (224)
357 1g8f_A Sulfate adenylyltransfe 93.7 0.042 1.4E-06 58.0 4.2 27 110-136 395-421 (511)
358 2qm8_A GTPase/ATPase; G protei 93.7 0.14 5E-06 51.0 8.0 25 110-134 55-79 (337)
359 1sky_E F1-ATPase, F1-ATP synth 93.6 0.086 2.9E-06 54.8 6.3 23 112-134 153-175 (473)
360 3b85_A Phosphate starvation-in 93.6 0.026 8.9E-07 52.3 2.2 22 112-133 24-45 (208)
361 3sop_A Neuronal-specific septi 93.6 0.038 1.3E-06 53.5 3.3 23 112-134 4-26 (270)
362 3eiq_A Eukaryotic initiation f 93.6 0.5 1.7E-05 47.6 12.1 55 73-129 39-96 (414)
363 4edh_A DTMP kinase, thymidylat 93.6 0.062 2.1E-06 50.0 4.7 32 111-142 7-41 (213)
364 3lxx_A GTPase IMAP family memb 93.5 0.15 5.1E-06 47.8 7.5 23 111-133 30-52 (239)
365 3ice_A Transcription terminati 93.4 0.14 4.9E-06 51.8 7.4 24 111-134 175-198 (422)
366 3iuy_A Probable ATP-dependent 93.4 0.38 1.3E-05 44.5 10.0 18 111-128 58-75 (228)
367 3ly5_A ATP-dependent RNA helic 93.4 0.18 6.2E-06 48.1 7.9 18 111-128 92-109 (262)
368 3fmp_B ATP-dependent RNA helic 93.4 0.6 2E-05 48.5 12.6 53 73-127 91-148 (479)
369 2f1r_A Molybdopterin-guanine d 93.4 0.029 1E-06 50.3 2.1 24 112-135 4-27 (171)
370 3tbk_A RIG-I helicase domain; 93.4 0.63 2.2E-05 48.8 12.9 34 111-144 20-61 (555)
371 1sgw_A Putative ABC transporte 93.3 0.033 1.1E-06 51.9 2.4 24 111-134 36-59 (214)
372 1oix_A RAS-related protein RAB 93.3 0.043 1.5E-06 49.6 3.2 23 112-134 31-53 (191)
373 3v9p_A DTMP kinase, thymidylat 93.3 0.051 1.7E-06 51.1 3.6 32 111-142 26-64 (227)
374 2zj8_A DNA helicase, putative 93.3 0.31 1.1E-05 53.7 10.6 19 110-128 39-57 (720)
375 3ber_A Probable ATP-dependent 93.3 0.36 1.2E-05 45.6 9.7 55 72-128 41-98 (249)
376 2f9l_A RAB11B, member RAS onco 93.3 0.046 1.6E-06 49.6 3.3 22 112-133 7-28 (199)
377 1b0u_A Histidine permease; ABC 93.3 0.042 1.4E-06 52.9 3.1 24 111-134 33-56 (262)
378 1mv5_A LMRA, multidrug resista 93.2 0.032 1.1E-06 53.0 2.2 25 110-134 28-52 (243)
379 2va8_A SSO2462, SKI2-type heli 93.2 0.32 1.1E-05 53.5 10.6 21 110-130 46-66 (715)
380 3fht_A ATP-dependent RNA helic 93.2 0.51 1.7E-05 47.5 11.4 54 72-127 23-81 (412)
381 4a2p_A RIG-I, retinoic acid in 93.2 0.46 1.6E-05 50.1 11.4 34 111-144 23-64 (556)
382 3tmk_A Thymidylate kinase; pho 93.2 0.094 3.2E-06 48.9 5.3 30 111-140 6-35 (216)
383 1g6h_A High-affinity branched- 93.1 0.036 1.2E-06 53.1 2.4 25 111-135 34-58 (257)
384 1z2a_A RAS-related protein RAB 93.1 0.049 1.7E-06 47.3 3.1 23 111-133 6-28 (168)
385 2d2e_A SUFC protein; ABC-ATPas 93.1 0.044 1.5E-06 52.3 3.0 23 111-133 30-52 (250)
386 1nrj_B SR-beta, signal recogni 93.1 0.063 2.1E-06 49.3 4.0 24 111-134 13-36 (218)
387 1fuu_A Yeast initiation factor 93.1 0.29 9.9E-06 49.0 9.2 54 72-127 19-75 (394)
388 2ghi_A Transport protein; mult 93.1 0.047 1.6E-06 52.4 3.1 26 109-134 45-70 (260)
389 2ff7_A Alpha-hemolysin translo 93.1 0.038 1.3E-06 52.7 2.4 24 111-134 36-59 (247)
390 2zu0_C Probable ATP-dependent 93.0 0.055 1.9E-06 52.2 3.6 25 109-133 45-69 (267)
391 2olj_A Amino acid ABC transpor 93.0 0.037 1.3E-06 53.3 2.4 25 110-134 50-74 (263)
392 1ji0_A ABC transporter; ATP bi 93.0 0.039 1.3E-06 52.3 2.4 24 111-134 33-56 (240)
393 2p67_A LAO/AO transport system 93.0 0.24 8.1E-06 49.4 8.3 26 109-134 55-80 (341)
394 2ixe_A Antigen peptide transpo 93.0 0.038 1.3E-06 53.4 2.4 27 109-135 44-70 (271)
395 2pze_A Cystic fibrosis transme 93.0 0.04 1.4E-06 51.9 2.4 24 111-134 35-58 (229)
396 1lw7_A Transcriptional regulat 92.9 0.052 1.8E-06 54.8 3.3 28 110-137 170-197 (365)
397 2dyk_A GTP-binding protein; GT 92.9 0.059 2E-06 46.5 3.3 22 112-133 3-24 (161)
398 3h1t_A Type I site-specific re 92.9 0.19 6.6E-06 53.9 8.0 23 111-133 199-221 (590)
399 2gza_A Type IV secretion syste 92.9 0.054 1.9E-06 54.7 3.4 25 111-135 176-200 (361)
400 2o8b_B DNA mismatch repair pro 92.9 0.34 1.2E-05 55.5 10.3 22 110-131 789-810 (1022)
401 2qi9_C Vitamin B12 import ATP- 92.8 0.043 1.5E-06 52.4 2.4 25 111-135 27-51 (249)
402 2j0s_A ATP-dependent RNA helic 92.8 0.28 9.7E-06 49.6 8.8 56 73-130 36-94 (410)
403 1vpl_A ABC transporter, ATP-bi 92.7 0.055 1.9E-06 51.9 3.1 25 110-134 41-65 (256)
404 3lv8_A DTMP kinase, thymidylat 92.7 0.069 2.4E-06 50.5 3.7 25 110-134 27-51 (236)
405 2ihy_A ABC transporter, ATP-bi 92.7 0.045 1.5E-06 53.2 2.4 25 111-135 48-72 (279)
406 2yz2_A Putative ABC transporte 92.7 0.056 1.9E-06 52.1 3.1 25 110-134 33-57 (266)
407 3ld9_A DTMP kinase, thymidylat 92.7 0.073 2.5E-06 49.9 3.8 28 109-136 20-47 (223)
408 1g29_1 MALK, maltose transport 92.7 0.053 1.8E-06 55.0 3.0 24 111-134 30-53 (372)
409 2gks_A Bifunctional SAT/APS ki 92.6 0.085 2.9E-06 56.3 4.7 37 110-146 372-411 (546)
410 1svi_A GTP-binding protein YSX 92.6 0.057 2E-06 48.5 2.9 24 110-133 23-46 (195)
411 2wji_A Ferrous iron transport 92.6 0.056 1.9E-06 47.4 2.8 22 112-133 5-26 (165)
412 3g5u_A MCG1178, multidrug resi 92.6 0.31 1.1E-05 57.4 9.8 27 108-134 414-440 (1284)
413 3d31_A Sulfate/molybdate ABC t 92.6 0.043 1.5E-06 55.1 2.1 24 111-134 27-50 (348)
414 2nq2_C Hypothetical ABC transp 92.6 0.048 1.7E-06 52.1 2.4 24 111-134 32-55 (253)
415 2zej_A Dardarin, leucine-rich 92.5 0.048 1.6E-06 48.8 2.2 21 112-132 4-24 (184)
416 2ce2_X GTPase HRAS; signaling 92.5 0.068 2.3E-06 46.1 3.2 23 112-134 5-27 (166)
417 1kao_A RAP2A; GTP-binding prot 92.5 0.07 2.4E-06 46.1 3.3 22 112-133 5-26 (167)
418 2wsm_A Hydrogenase expression/ 92.4 0.12 4E-06 47.6 4.9 25 111-135 31-55 (221)
419 2qu8_A Putative nucleolar GTP- 92.4 0.58 2E-05 43.2 9.7 23 111-133 30-52 (228)
420 2pjz_A Hypothetical protein ST 92.4 0.053 1.8E-06 52.2 2.4 25 110-134 30-54 (263)
421 2gk6_A Regulator of nonsense t 92.4 0.066 2.3E-06 58.2 3.5 33 112-144 197-233 (624)
422 2vp4_A Deoxynucleoside kinase; 92.3 0.089 3.1E-06 49.2 3.9 30 110-140 20-49 (230)
423 1ek0_A Protein (GTP-binding pr 92.3 0.078 2.7E-06 46.1 3.3 23 112-134 5-27 (170)
424 1u8z_A RAS-related protein RAL 92.3 0.078 2.7E-06 45.9 3.3 23 111-133 5-27 (168)
425 3gd7_A Fusion complex of cysti 92.2 0.063 2.2E-06 54.7 2.9 24 110-133 47-70 (390)
426 1z0j_A RAB-22, RAS-related pro 92.2 0.08 2.7E-06 46.0 3.3 23 112-134 8-30 (170)
427 1g16_A RAS-related protein SEC 92.2 0.079 2.7E-06 46.1 3.2 22 112-133 5-26 (170)
428 1ko7_A HPR kinase/phosphatase; 92.2 0.096 3.3E-06 51.6 4.0 28 111-139 145-172 (314)
429 2nzj_A GTP-binding protein REM 92.1 0.078 2.7E-06 46.4 3.1 22 112-133 6-27 (175)
430 2lkc_A Translation initiation 92.1 0.093 3.2E-06 46.1 3.6 24 110-133 8-31 (178)
431 1z08_A RAS-related protein RAB 92.1 0.083 2.8E-06 46.0 3.3 23 111-133 7-29 (170)
432 1wms_A RAB-9, RAB9, RAS-relate 92.1 0.082 2.8E-06 46.5 3.3 23 111-133 8-30 (177)
433 3oiy_A Reverse gyrase helicase 92.1 0.14 4.6E-06 52.3 5.4 20 111-130 37-56 (414)
434 1oxx_K GLCV, glucose, ABC tran 92.1 0.045 1.5E-06 55.1 1.6 24 111-134 32-55 (353)
435 3ch4_B Pmkase, phosphomevalona 92.0 0.17 5.7E-06 46.6 5.2 41 106-146 7-48 (202)
436 2wjg_A FEOB, ferrous iron tran 92.0 0.078 2.7E-06 47.2 3.0 23 111-133 8-30 (188)
437 1ky3_A GTP-binding protein YPT 92.0 0.084 2.9E-06 46.5 3.1 23 111-133 9-31 (182)
438 2erx_A GTP-binding protein DI- 92.0 0.08 2.7E-06 46.1 2.9 22 112-133 5-26 (172)
439 1c1y_A RAS-related protein RAP 91.9 0.091 3.1E-06 45.5 3.3 22 112-133 5-26 (167)
440 2gj8_A MNME, tRNA modification 91.9 0.084 2.9E-06 46.7 3.1 23 111-133 5-27 (172)
441 2atv_A RERG, RAS-like estrogen 91.9 0.1 3.4E-06 47.1 3.6 24 110-133 28-51 (196)
442 1r2q_A RAS-related protein RAB 91.9 0.092 3.1E-06 45.6 3.3 22 112-133 8-29 (170)
443 3e2i_A Thymidine kinase; Zn-bi 91.9 0.23 7.7E-06 46.1 6.0 30 112-141 30-62 (219)
444 3q72_A GTP-binding protein RAD 91.9 0.081 2.8E-06 45.9 2.9 21 112-132 4-24 (166)
445 1upt_A ARL1, ADP-ribosylation 91.9 0.11 3.7E-06 45.3 3.7 23 111-133 8-30 (171)
446 2hxs_A RAB-26, RAS-related pro 91.9 0.092 3.2E-06 46.2 3.2 23 111-133 7-29 (178)
447 1r8s_A ADP-ribosylation factor 91.8 0.096 3.3E-06 45.4 3.3 22 112-133 2-23 (164)
448 3q85_A GTP-binding protein REM 91.8 0.09 3.1E-06 45.8 3.1 21 112-132 4-24 (169)
449 4tmk_A Protein (thymidylate ki 91.8 0.089 3E-06 48.9 3.1 24 111-134 4-27 (213)
450 2bbs_A Cystic fibrosis transme 91.8 0.082 2.8E-06 51.6 3.0 25 110-134 64-88 (290)
451 1yrb_A ATP(GTP)binding protein 91.7 0.18 6.3E-06 47.7 5.5 34 109-142 13-48 (262)
452 3bc1_A RAS-related protein RAB 91.7 0.097 3.3E-06 46.6 3.3 23 111-133 12-34 (195)
453 3g5u_A MCG1178, multidrug resi 91.7 0.27 9.3E-06 57.9 7.8 24 110-133 1059-1082(1284)
454 2v6i_A RNA helicase; membrane, 91.6 0.5 1.7E-05 48.7 9.0 17 111-127 3-19 (431)
455 2y8e_A RAB-protein 6, GH09086P 91.6 0.099 3.4E-06 45.9 3.2 22 112-133 16-37 (179)
456 2b6h_A ADP-ribosylation factor 91.6 0.13 4.4E-06 46.4 4.0 23 110-132 29-51 (192)
457 1m7b_A RND3/RHOE small GTP-bin 91.6 0.1 3.4E-06 46.5 3.2 23 111-133 8-30 (184)
458 1z0f_A RAB14, member RAS oncog 91.5 0.11 3.7E-06 45.6 3.3 24 111-134 16-39 (179)
459 2npi_A Protein CLP1; CLP1-PCF1 91.5 0.091 3.1E-06 54.8 3.2 25 110-134 138-162 (460)
460 2p5s_A RAS and EF-hand domain 91.5 0.11 3.9E-06 46.9 3.5 24 110-133 28-51 (199)
461 3nh6_A ATP-binding cassette SU 91.5 0.058 2E-06 53.1 1.6 27 108-134 78-104 (306)
462 3dkp_A Probable ATP-dependent 91.5 0.88 3E-05 42.4 9.9 17 111-127 67-83 (245)
463 3con_A GTPase NRAS; structural 91.5 0.11 3.7E-06 46.4 3.3 24 111-134 22-45 (190)
464 4dsu_A GTPase KRAS, isoform 2B 91.5 0.11 3.7E-06 46.2 3.3 23 112-134 6-28 (189)
465 1f2t_A RAD50 ABC-ATPase; DNA d 91.4 0.11 3.8E-06 45.2 3.3 23 112-134 25-47 (149)
466 2fn4_A P23, RAS-related protei 91.4 0.11 3.6E-06 45.8 3.2 23 111-133 10-32 (181)
467 1knx_A Probable HPR(Ser) kinas 91.4 0.092 3.2E-06 51.6 3.0 29 110-139 147-175 (312)
468 3clv_A RAB5 protein, putative; 91.4 0.14 4.7E-06 45.9 4.0 24 110-133 7-30 (208)
469 2oil_A CATX-8, RAS-related pro 91.4 0.11 3.7E-06 46.6 3.3 23 111-133 26-48 (193)
470 1wrb_A DJVLGB; RNA helicase, D 91.4 0.64 2.2E-05 43.7 8.9 18 111-128 61-78 (253)
471 4a2q_A RIG-I, retinoic acid in 91.4 0.98 3.4E-05 50.3 11.7 33 111-143 264-304 (797)
472 2f7s_A C25KG, RAS-related prot 91.4 0.56 1.9E-05 42.7 8.2 22 112-133 27-48 (217)
473 1nij_A Hypothetical protein YJ 91.4 0.15 5.3E-06 50.3 4.6 23 112-134 6-28 (318)
474 1tq4_A IIGP1, interferon-induc 91.4 0.14 4.9E-06 52.5 4.4 22 112-133 71-92 (413)
475 3fho_A ATP-dependent RNA helic 91.4 0.78 2.7E-05 48.2 10.3 19 110-128 158-176 (508)
476 2bme_A RAB4A, RAS-related prot 91.3 0.11 3.7E-06 46.1 3.2 23 111-133 11-33 (186)
477 2efe_B Small GTP-binding prote 91.3 0.11 3.9E-06 45.7 3.3 23 111-133 13-35 (181)
478 2a9k_A RAS-related protein RAL 91.3 0.11 3.9E-06 45.8 3.3 23 111-133 19-41 (187)
479 3tw8_B RAS-related protein RAB 91.3 0.1 3.6E-06 45.8 2.9 22 111-132 10-31 (181)
480 3sqw_A ATP-dependent RNA helic 91.2 0.31 1E-05 52.2 7.1 17 110-126 60-76 (579)
481 3t1o_A Gliding protein MGLA; G 91.2 0.12 4.1E-06 46.2 3.3 24 111-134 15-38 (198)
482 3cph_A RAS-related protein SEC 91.2 0.13 4.3E-06 46.9 3.5 23 111-133 21-43 (213)
483 2hf9_A Probable hydrogenase ni 91.1 0.14 4.7E-06 47.3 3.8 24 111-134 39-62 (226)
484 4hlc_A DTMP kinase, thymidylat 91.1 0.19 6.4E-06 46.3 4.6 30 113-142 5-36 (205)
485 1dek_A Deoxynucleoside monopho 91.1 0.1 3.5E-06 49.5 2.8 27 112-138 3-29 (241)
486 2cxx_A Probable GTP-binding pr 91.1 0.099 3.4E-06 46.5 2.6 22 112-133 3-24 (190)
487 2wjy_A Regulator of nonsense t 91.0 0.1 3.5E-06 58.2 3.2 32 112-143 373-408 (800)
488 2oca_A DAR protein, ATP-depend 91.0 0.48 1.6E-05 49.6 8.3 33 111-143 129-165 (510)
489 2e87_A Hypothetical protein PH 91.0 0.73 2.5E-05 46.1 9.3 24 110-133 167-190 (357)
490 1moz_A ARL1, ADP-ribosylation 91.0 0.12 4E-06 45.7 3.1 24 109-132 17-40 (183)
491 3kkq_A RAS-related protein M-R 91.0 0.13 4.4E-06 45.6 3.3 23 111-133 19-41 (183)
492 4ag6_A VIRB4 ATPase, type IV s 91.0 0.21 7.2E-06 50.7 5.3 24 110-133 35-58 (392)
493 2g6b_A RAS-related protein RAB 91.0 0.13 4.4E-06 45.3 3.3 23 111-133 11-33 (180)
494 1zj6_A ADP-ribosylation factor 91.0 0.21 7.2E-06 44.5 4.7 22 111-132 17-38 (187)
495 3bwd_D RAC-like GTP-binding pr 91.0 0.16 5.4E-06 44.8 3.8 24 110-133 8-31 (182)
496 3i5x_A ATP-dependent RNA helic 90.9 0.71 2.4E-05 49.0 9.6 17 110-126 111-127 (563)
497 1m2o_B GTP-binding protein SAR 90.9 0.14 4.7E-06 46.1 3.4 22 112-133 25-46 (190)
498 1oyw_A RECQ helicase, ATP-depe 90.9 0.3 1E-05 51.8 6.6 32 111-142 41-72 (523)
499 2gf9_A RAS-related protein RAB 90.9 0.13 4.5E-06 46.0 3.3 23 112-134 24-46 (189)
500 1mh1_A RAC1; GTP-binding, GTPa 90.9 0.13 4.5E-06 45.4 3.3 22 112-133 7-28 (186)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=1.9e-83 Score=678.20 Aligned_cols=429 Identities=54% Similarity=0.885 Sum_probs=380.6
Q ss_pred CCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhh
Q 009974 71 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 150 (521)
Q Consensus 71 ~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 150 (521)
.+..+|+||+|++++++++++++.+++++..|..+|.++|+|+||+||||||||++|+++|++++.||+.++++++...+
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 55679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC----CcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCc
Q 009974 151 VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDP 226 (521)
Q Consensus 151 ~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~----~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~ 226 (521)
.|.+..+++.+|..+....||||||||+|.++.+++.. .....+++++|+..|+++..+.+++||++||+++.+|+
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~ 169 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDP 169 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCG
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhch
Confidence 99999999999999999999999999999998876532 23346789999999998887889999999999999999
Q ss_pred cccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 009974 227 ALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATEL 306 (521)
Q Consensus 227 al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~ 306 (521)
+++|||||++.+.+++|+.++|.+|++.+++..++..++++..++..++|++++||.++|++|+..|.+++...|+.+|+
T Consensus 170 allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl 249 (476)
T 2ce7_A 170 ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDF 249 (476)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred hhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHH
Confidence 99999999999999999999999999999998888888899999999999999999999999999999999899999999
Q ss_pred HHHHHHHhcCccccccccchHHHHHHHHHHhhhHHHhhhcCCCCCcceEEEeeCC-CCCcceeecCCCccchhcHHHHHH
Q 009974 307 EFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRG-SALGMVTQLPSSDETSVSQKQLLA 385 (521)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~~~a~heaghavv~~~~~~~~~v~~v~i~~r~-~~~g~~~~~~~~~~~~~t~~~l~~ 385 (521)
..|+++++++..++...+++++++.+|+||+|||++++.+++.+++++++|.||| .++||+++.|.++...+||.+|++
T Consensus 250 ~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~~~p~~~~~~~~~~~l~~ 329 (476)
T 2ce7_A 250 EEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNELLD 329 (476)
T ss_dssp HHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------CCSCBHHHHHH
T ss_pred HHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecCcccccceEEEcCcccccccCHHHHHH
Confidence 9999999998877777889999999999999999999999999999999999999 899999999998888999999999
Q ss_pred HHHHHhhHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHHHhcCCCCCCCccccCC---------------CCChHHHHH
Q 009974 386 RLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD---------------RPSSEMQSR 450 (521)
Q Consensus 386 ~i~~~LaGraAE~~~~G~~~~~~g~~~Dl~~At~la~~mv~~~Gm~~~~g~~~~~~---------------~~~~~~~~~ 450 (521)
+|+++|||||||+++||+ +||||++||++||+||+.||++||||+.+|++.+.. ..|+++...
T Consensus 330 ~i~~~l~Gr~ae~~~~g~--~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 407 (476)
T 2ce7_A 330 KLTALLGGRAAEEVVFGD--VTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASK 407 (476)
T ss_dssp HHHHHTHHHHHHHHHHSS--CCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCSCHHHHHH
T ss_pred HHHHHHhHHHHHhhhcCC--CCcccHHHHHHHHHHHHHHHHHhCCCCcCCceeecCCCccccccccccccccccHHHHHH
Confidence 999999999999999994 899999999999999999999999999999988753 246788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhcc
Q 009974 451 IDAEVVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLP 501 (521)
Q Consensus 451 id~ev~~~l~~~~~~a~~iL~~~r~~l~~la~~Lle~e~l~~~ei~~il~~ 501 (521)
||.||+++|+++|++|+++|++||+.|++||++|+++|+|+++||++|+..
T Consensus 408 ~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~ 458 (476)
T 2ce7_A 408 IDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSE 458 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999986
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-79 Score=652.50 Aligned_cols=429 Identities=52% Similarity=0.843 Sum_probs=400.0
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhh
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 151 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~ 151 (521)
+..+|+||+|+++++.++++++.++.++..|..++.+.|+|++|+||||||||++|+++|++++.++++++++++...+.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC----CcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCcc
Q 009974 152 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPA 227 (521)
Q Consensus 152 g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~----~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~a 227 (521)
+...+.++.+|+.+....|||+||||+|.++..++.. .....+++++++..|++...+..++++++||+|+.+|++
T Consensus 106 g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~a 185 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 185 (499)
T ss_dssp THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTT
T ss_pred hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcc
Confidence 8888899999999988889999999999998765431 223457889999999998888889999999999999999
Q ss_pred ccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 009974 228 LTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 307 (521)
Q Consensus 228 l~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~ 307 (521)
++|+|||++.+.+++|+.++|.+|++.+++...+.+++++..++..++|++++||+++|++|+..|.+++...|+.+|+.
T Consensus 186 Llr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~ 265 (499)
T 2dhr_A 186 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLE 265 (499)
T ss_dssp TSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHH
T ss_pred cccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Confidence 99999999999999999999999999999888888889999999999999999999999999999988888899999999
Q ss_pred HHHHHHhcCccccccccchHHHHHHHHHHhhhHHHhhhcCCCCCcceEEEeeCCCCCcceeecCC-CccchhcHHHHHHH
Q 009974 308 FAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPS-SDETSVSQKQLLAR 386 (521)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~~~a~heaghavv~~~~~~~~~v~~v~i~~r~~~~g~~~~~~~-~~~~~~t~~~l~~~ 386 (521)
+|++++.++..++...+++++++.+++||+||||+++++++.++|++++|.||++++||+. |. ++.+..|+.+++++
T Consensus 266 ~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr~~~~g~~~--p~q~~~~~~t~~~l~~~ 343 (499)
T 2dhr_A 266 EAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGRALGFMM--PRREDMLHWSRKRLLDQ 343 (499)
T ss_dssp HHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCSSCTTCSSH--HHHTTCCCCCHHHHHHH
T ss_pred HHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeecCCCcCcccc--cchhhhhccCHHHHHHH
Confidence 9999999998777778899999999999999999999999999999999999999999988 55 67778899999999
Q ss_pred HHHHhhHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHHHhcCCCCCCCccccCC------------CCChHHHHHHHHH
Q 009974 387 LDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD------------RPSSEMQSRIDAE 454 (521)
Q Consensus 387 i~~~LaGraAE~~~~G~~~~~~g~~~Dl~~At~la~~mv~~~Gm~~~~g~~~~~~------------~~~~~~~~~id~e 454 (521)
|+++|||||||+++||+ +||||++||++||+||+.||++||||+.+|++.+.. .+|+++...||.|
T Consensus 344 i~~~lgGr~ae~~~~g~--~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 421 (499)
T 2dhr_A 344 IAVALAGRAAEEIVFDD--VTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVREDTYLGGYDVRQYSEETAKRIDEA 421 (499)
T ss_dssp HHHHHHHHHHHHHHSCS--CCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCCCSSCCCCCCCCCHHHHHHHHHH
T ss_pred HHHHhhhHhHHHhhhcc--cCcccHHHHHHHHHHHHHHHHHhCCCCCCCceeecCCCccccccccccccCHHHHHHHHHH
Confidence 99999999999999994 899999999999999999999999999999987743 2478899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhccCCC
Q 009974 455 VVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLPYRE 504 (521)
Q Consensus 455 v~~~l~~~~~~a~~iL~~~r~~l~~la~~Lle~e~l~~~ei~~il~~~~~ 504 (521)
|+++|+++|++|+++|++||+.|++||++|+++|||+++||++|+...+.
T Consensus 422 v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~~~ 471 (499)
T 2dhr_A 422 VRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGLPL 471 (499)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999987644
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-51 Score=422.99 Aligned_cols=249 Identities=38% Similarity=0.632 Sum_probs=236.1
Q ss_pred CCCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009974 69 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 147 (521)
Q Consensus 69 ~~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 147 (521)
.+.|.++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence 355778999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCC----cccHHHHHHHHHhhhcCccCCceEEEeecCCCCC
Q 009974 148 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 223 (521)
Q Consensus 148 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~----~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ 223 (521)
++|+|++++.++.+|..|+..+||||||||+|++++++.... ....+++++||.+||++....+|+||+|||+|+.
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI 299 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh
Confidence 999999999999999999999999999999999998875433 2346789999999999999999999999999999
Q ss_pred CCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 009974 224 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 303 (521)
Q Consensus 224 ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~ 303 (521)
||+|++||||||++|+|++|+.++|.+||+.|+++.++..++|+..+|..|+||||+||.++|++|++.|.++++..|+.
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~ 379 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQ 379 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCH
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCc
Q 009974 304 TELEFAKDRILMGT 317 (521)
Q Consensus 304 ~~~~~a~~~~~~~~ 317 (521)
+||..|+++++...
T Consensus 380 ~Df~~Al~~v~~~~ 393 (405)
T 4b4t_J 380 EDFELAVGKVMNKN 393 (405)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc
Confidence 99999999987643
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-50 Score=413.69 Aligned_cols=249 Identities=36% Similarity=0.639 Sum_probs=236.1
Q ss_pred CCCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009974 69 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 147 (521)
Q Consensus 69 ~~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 147 (521)
.+.+.++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 456788999999999999999999988 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCC----cccHHHHHHHHHhhhcCccCCceEEEeecCCCCC
Q 009974 148 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 223 (521)
Q Consensus 148 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~----~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ 223 (521)
+.|+|++++.++.+|..|+..+||||||||+|.++..|.... .....+++++|.++|++....+|+||+|||+|+.
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~ 333 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET 333 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTT
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhh
Confidence 999999999999999999999999999999999998875432 2346789999999999999999999999999999
Q ss_pred CCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 009974 224 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 303 (521)
Q Consensus 224 ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~ 303 (521)
||+|++||||||++|+|++|+.++|.+||+.|+++.++..++|+..+|..|+||||+||.++|++|++.|.+++...|+.
T Consensus 334 LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~ 413 (437)
T 4b4t_I 334 LDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTA 413 (437)
T ss_dssp CCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCH
T ss_pred cCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCc
Q 009974 304 TELEFAKDRILMGT 317 (521)
Q Consensus 304 ~~~~~a~~~~~~~~ 317 (521)
+||..|++++..+.
T Consensus 414 eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 414 EDFKQAKERVMKNK 427 (437)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999987653
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-49 Score=412.93 Aligned_cols=250 Identities=40% Similarity=0.646 Sum_probs=237.0
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
+.|.++|+||+|++++|++|++.+.+ +.+|+.|..+|.++|+|+|||||||||||++|+|+|++++.+|+.++++++.+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 56778999999999999999999887 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCC----cccHHHHHHHHHhhhcCccCCceEEEeecCCCCCC
Q 009974 149 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 224 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~----~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~l 224 (521)
.|+|++++.++.+|..|+..+||||||||+|.++.+|.... .....+++++|.+|+++....+|+||+|||+|+.|
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~L 361 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL 361 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSB
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccC
Confidence 99999999999999999999999999999999998875432 23467889999999999999999999999999999
Q ss_pred CccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 009974 225 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTAT 304 (521)
Q Consensus 225 d~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~ 304 (521)
|++++||||||++|+|++|+.++|.+||+.|+++.++..++++..+|+.|.||||+||+++|++|++.|.++++..|+.+
T Consensus 362 DpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~ 441 (467)
T 4b4t_H 362 DPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEK 441 (467)
T ss_dssp CHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHH
T ss_pred ChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHH
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccc
Q 009974 305 ELEFAKDRILMGTER 319 (521)
Q Consensus 305 ~~~~a~~~~~~~~~~ 319 (521)
||..|+++++.+.++
T Consensus 442 Df~~Al~kV~~g~~k 456 (467)
T 4b4t_H 442 DFLKAVDKVISGYKK 456 (467)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCccc
Confidence 999999999887654
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-49 Score=412.11 Aligned_cols=248 Identities=39% Similarity=0.623 Sum_probs=233.9
Q ss_pred CCCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009974 69 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 147 (521)
Q Consensus 69 ~~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 147 (521)
.+.+.++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 356788999999999999999998776 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCc----ccHHHHHHHHHhhhcCccCCceEEEeecCCCCC
Q 009974 148 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG----HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 223 (521)
Q Consensus 148 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~----~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ 223 (521)
+.|+|.+++.++.+|..|+..+||||||||+|.++++|..... ....++++||..|+++....+|+||+|||+|+.
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~ 332 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh
Confidence 9999999999999999999999999999999999988754332 345688999999999999999999999999999
Q ss_pred CCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 009974 224 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 303 (521)
Q Consensus 224 ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~ 303 (521)
||+|++||||||++|+|++|+.++|.+||+.|+++.++..++++..+|+.|.||||+||.++|++|++.|.+++...|+.
T Consensus 333 LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~ 412 (434)
T 4b4t_M 333 LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKH 412 (434)
T ss_dssp CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCH
T ss_pred cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 009974 304 TELEFAKDRILMG 316 (521)
Q Consensus 304 ~~~~~a~~~~~~~ 316 (521)
+||..|++++.+.
T Consensus 413 ~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 413 EDFVEGISEVQAR 425 (434)
T ss_dssp HHHHHHHHSCSSS
T ss_pred HHHHHHHHHHhCC
Confidence 9999999987654
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-49 Score=409.75 Aligned_cols=247 Identities=40% Similarity=0.657 Sum_probs=234.3
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
+.+.++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++.+|+.++++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 46778999999999999999999988 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCC----cccHHHHHHHHHhhhcCccCCceEEEeecCCCCCC
Q 009974 149 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 224 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~----~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~l 224 (521)
.|.|.+++.++.+|..|+..+||||||||+|.++.++.... .....++++||.+||++....+|+||+|||+|+.|
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 99999999999999999999999999999999998875432 23467889999999999999999999999999999
Q ss_pred CccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 009974 225 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTAT 304 (521)
Q Consensus 225 d~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~ 304 (521)
|++++||||||++|+|++|+.++|.+||+.|+++.+...++|+..+|..|.||||+||.++|++|++.|.+++...|+.+
T Consensus 334 DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~ 413 (437)
T 4b4t_L 334 DPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPD 413 (437)
T ss_dssp CTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 99999999999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 009974 305 ELEFAKDRILMG 316 (521)
Q Consensus 305 ~~~~a~~~~~~~ 316 (521)
||..|++++...
T Consensus 414 d~~~Al~~v~~~ 425 (437)
T 4b4t_L 414 DLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999988654
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-48 Score=403.04 Aligned_cols=246 Identities=37% Similarity=0.588 Sum_probs=232.4
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
+.+.++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++.+|+.++++++.+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 45678999999999999999998886 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC----CcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCC
Q 009974 149 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 224 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~----~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~l 224 (521)
.|.|.+++.++.+|..|+..+||||||||+|.++..+... +....+++++||.+||++....+|+||+|||+|+.|
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~L 324 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTL 324 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSC
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhc
Confidence 9999999999999999999999999999999999887432 223467899999999999999999999999999999
Q ss_pred CccccCCCccceEEecC-CCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 009974 225 DPALTRPGRFDRHIVVP-NPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 303 (521)
Q Consensus 225 d~al~r~gRf~~~i~~~-~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~ 303 (521)
|++++||||||+.|+|| +|+.++|..||+.|+++.++..++|+..+|..|.||||+||.++|++|++.|.++++..|+.
T Consensus 325 D~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~ 404 (428)
T 4b4t_K 325 DPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQ 404 (428)
T ss_dssp CHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred ChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
Confidence 99999999999999996 89999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 009974 304 TELEFAKDRILM 315 (521)
Q Consensus 304 ~~~~~a~~~~~~ 315 (521)
+||.+|+.+++.
T Consensus 405 ~d~~~A~~~~~~ 416 (428)
T 4b4t_K 405 SDLEEAYATQVK 416 (428)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHhhC
Confidence 999999987653
No 9
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=2.4e-48 Score=370.53 Aligned_cols=189 Identities=40% Similarity=0.657 Sum_probs=156.5
Q ss_pred cCccccccccchHHHHHHHHHHhhhHHHhhhcCCCCCcceEEEeeCCCCCcceeecCCCccchhcHHHHHHHHHHHhhHH
Q 009974 315 MGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQLLARLDVCMGGR 394 (521)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~a~heaghavv~~~~~~~~~v~~v~i~~r~~~~g~~~~~~~~~~~~~t~~~l~~~i~~~LaGr 394 (521)
+|+++++..+++++++++||||||||||++++++.+||++|||+|||+++||+.+.|.++...+||.+|+++|+++||||
T Consensus 2 ~G~ekk~~~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG~alG~t~~~P~ed~~~~tk~~l~~~i~v~LgGR 81 (238)
T 2di4_A 2 QGPLGSHMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDLYNKILVLLGGR 81 (238)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC----------------CCCCBHHHHHHHHHHHHHHH
T ss_pred CCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeecCCcceEEEeCCcccccccCHHHHHHHHHHHHhHH
Confidence 57777778899999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred HHHHHHhCCCCCCcchhhHHHHHHHHHHHHHHhcCCCCCCCccccCC-------------CCChHHHHHHHHHHHHHHHH
Q 009974 395 VAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD-------------RPSSEMQSRIDAEVVKLLRE 461 (521)
Q Consensus 395 aAE~~~~G~~~~~~g~~~Dl~~At~la~~mv~~~Gm~~~~g~~~~~~-------------~~~~~~~~~id~ev~~~l~~ 461 (521)
|||+++||.+.+||||++||++||+||+.||++||||+.+|++.+.. .+|++++..||.||+++|++
T Consensus 82 aAEelifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~iD~Ev~~il~~ 161 (238)
T 2di4_A 82 AAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDEEVKRIITE 161 (238)
T ss_dssp HHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCccccccccccccccCHHHHHHHHHHHHHHHHH
Confidence 99999996556899999999999999999999999999999998752 35788899999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhccCC
Q 009974 462 AYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLPYR 503 (521)
Q Consensus 462 ~~~~a~~iL~~~r~~l~~la~~Lle~e~l~~~ei~~il~~~~ 503 (521)
+|++|++||++||+.|++||++|+++|||+++||++|+..++
T Consensus 162 ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~~ 203 (238)
T 2di4_A 162 QYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLYG 203 (238)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccCC
Confidence 999999999999999999999999999999999999997753
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1e-43 Score=393.77 Aligned_cols=228 Identities=41% Similarity=0.724 Sum_probs=186.9
Q ss_pred CCCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009974 69 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 147 (521)
Q Consensus 69 ~~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 147 (521)
+..+.++|+|+.|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 469 ~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~ 548 (806)
T 3cf2_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhh
Confidence 455678999999999999999999988 7899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC----CcccHHHHHHHHHhhhcCccCCceEEEeecCCCCC
Q 009974 148 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 223 (521)
Q Consensus 148 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~----~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ 223 (521)
++|+|++++.++.+|..|+..+||||||||||++++.|+.. .+..++++++||.+||++....+|+||+|||+|+.
T Consensus 549 s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~ 628 (806)
T 3cf2_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSS
T ss_pred ccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchh
Confidence 99999999999999999999999999999999999887532 23456899999999999999999999999999999
Q ss_pred CCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 009974 224 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 296 (521)
Q Consensus 224 ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~ 296 (521)
||++++||||||++|+|++|+.++|.+||+.++++.++..++|+..+|+.|+||||+||.++|++|++.|.++
T Consensus 629 lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~ 701 (806)
T 3cf2_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701 (806)
T ss_dssp SCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHH
T ss_pred CCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998889999999999999999999999999999999876
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.5e-41 Score=374.60 Aligned_cols=246 Identities=41% Similarity=0.649 Sum_probs=228.4
Q ss_pred CCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhh
Q 009974 71 KNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 149 (521)
Q Consensus 71 ~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 149 (521)
.+.++|+||.|+++++++|++++.+ +++|+.|..+|.++|+|||||||||||||++|+++|++++.+|+.++++++.+.
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 4567999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCC-cccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccc
Q 009974 150 FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPAL 228 (521)
Q Consensus 150 ~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~-~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al 228 (521)
|.|.+++.++.+|..|+.++||||||||+|.++++++... ....+++++|+.+|+++..+.+|+||+|||+++.||+++
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~AL 357 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 357 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTT
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHH
Confidence 9999999999999999999999999999999998876544 345778999999999999899999999999999999999
Q ss_pred cCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC----------
Q 009974 229 TRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGG---------- 298 (521)
Q Consensus 229 ~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~---------- 298 (521)
+|||||++.|+++.|+.++|.+||+.++++..+..++++..+|..|.||+++||.++|++|+..|.++..
T Consensus 358 rR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~ 437 (806)
T 3cf2_A 358 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 437 (806)
T ss_dssp TSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCC
T ss_pred hCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 9999999999999999999999999999998888999999999999999999999999999998876531
Q ss_pred -------CccCHHHHHHHHHHHhcC
Q 009974 299 -------EKLTATELEFAKDRILMG 316 (521)
Q Consensus 299 -------~~it~~~~~~a~~~~~~~ 316 (521)
..++.+|+..|+..+.+.
T Consensus 438 ~~e~~~~~~v~~~Df~~Al~~~~ps 462 (806)
T 3cf2_A 438 DAEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp SHHHHHHCEECTTHHHHHHSSSSCC
T ss_pred chhhhccceeeHHHHHHHHHhCCCc
Confidence 247788999998876553
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=5.4e-38 Score=308.01 Aligned_cols=249 Identities=63% Similarity=1.020 Sum_probs=223.5
Q ss_pred CCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 69 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 69 ~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
+..+..+|+||+|++++++++.+++.++..+..|...+...|++++|+||||||||++|+++|++++.|++.++++++..
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC----CcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCC
Q 009974 149 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 224 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~----~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~l 224 (521)
.+.+...+.++.+|..+....|+++||||+|.+...++.. .......++.++..++++..+.+++||++||.++.+
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 8888888999999999999899999999999998765432 122346788999999988888889999999999999
Q ss_pred CccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 009974 225 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTAT 304 (521)
Q Consensus 225 d~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~ 304 (521)
|+++.|+|||++.+.+++|+.++|.+|++.+++..++.++.++..++..+.|||++||.++|++|...|..++...|+.+
T Consensus 164 ~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~ 243 (257)
T 1lv7_A 164 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMV 243 (257)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHH
Confidence 99999999999999999999999999999999888887888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCc
Q 009974 305 ELEFAKDRILMGT 317 (521)
Q Consensus 305 ~~~~a~~~~~~~~ 317 (521)
|+..|++++..|.
T Consensus 244 ~~~~a~~~~~~~~ 256 (257)
T 1lv7_A 244 EFEKAKDKIMMGL 256 (257)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCC
Confidence 9999999987664
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=1.5e-37 Score=312.13 Aligned_cols=245 Identities=39% Similarity=0.672 Sum_probs=219.9
Q ss_pred CCCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009974 69 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 147 (521)
Q Consensus 69 ~~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 147 (521)
.+.+..+|+||+|++++++.|++.+.+ +.+++.|..+|..+++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 86 (301)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHH
Confidence 345668999999999999999999987 8899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC----CcccHHHHHHHHHhhhcCccCCceEEEeecCCCCC
Q 009974 148 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 223 (521)
Q Consensus 148 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~----~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ 223 (521)
..+.|...+.++.+|..+....|+||||||+|.+...++.. .+.....+++++..++++....+++||+|||+++.
T Consensus 87 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 87 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 166 (301)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGG
T ss_pred hhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccc
Confidence 99999999999999999999999999999999997654321 23446788899999998877888999999999999
Q ss_pred CCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC------
Q 009974 224 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG------ 297 (521)
Q Consensus 224 ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~------ 297 (521)
+|++++|+|||+..+++++|+.++|.+|++++++..++..++++..++..+.||+|+||.++|++|...|.++.
T Consensus 167 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~ 246 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIR 246 (301)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999998887788899999999999999999999999998876542
Q ss_pred -------------------CCccCHHHHHHHHHHH
Q 009974 298 -------------------GEKLTATELEFAKDRI 313 (521)
Q Consensus 298 -------------------~~~it~~~~~~a~~~~ 313 (521)
...|+.+||..|+.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 281 (301)
T 3cf0_A 247 RERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFA 281 (301)
T ss_dssp -------------------CCCBCHHHHHHHHTTC
T ss_pred hhhhcccccccccccccccCCccCHHHHHHHHHHc
Confidence 1357888888888754
No 14
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=304.52 Aligned_cols=251 Identities=50% Similarity=0.809 Sum_probs=203.1
Q ss_pred cCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhh
Q 009974 73 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVG 152 (521)
Q Consensus 73 ~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g 152 (521)
..+|++|+|++++++.+++++..+..+..|...|...|+++||+||||||||++|+++|++++.+++.++++++...+.+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGG 81 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC-----CcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCcc
Q 009974 153 VGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPA 227 (521)
Q Consensus 153 ~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~-----~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~a 227 (521)
.....++.+|..+....|+||||||+|.+...+... .......++.++..+++.....++++|++||.++.+|++
T Consensus 82 ~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~ 161 (262)
T 2qz4_A 82 LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGA 161 (262)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSG
T ss_pred hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHH
Confidence 888899999999999899999999999997665431 223456788899999987777889999999999999999
Q ss_pred ccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCccc--HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHH
Q 009974 228 LTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVD--VKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATE 305 (521)
Q Consensus 228 l~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~--l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~ 305 (521)
++|+|||+..+++++|+.++|.+|+++++...+...+.+ ...++..+.|+++++|.+++++|...|.+++...|+.+|
T Consensus 162 l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d 241 (262)
T 2qz4_A 162 LMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLN 241 (262)
T ss_dssp GGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCC
T ss_pred HhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 999999999999999999999999999998876654443 478999999999999999999999999988889999999
Q ss_pred HHHHHHHHhcCccccccc
Q 009974 306 LEFAKDRILMGTERKTMF 323 (521)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~ 323 (521)
+..|+.++.++..++...
T Consensus 242 ~~~a~~~~~~~~~~~~~~ 259 (262)
T 2qz4_A 242 FEYAVERVLAGTAKKSKI 259 (262)
T ss_dssp HHHHHHHHHHHHHCC---
T ss_pred HHHHHHHhccChhhhhHh
Confidence 999999988776554433
No 15
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.3e-37 Score=305.21 Aligned_cols=244 Identities=41% Similarity=0.670 Sum_probs=206.5
Q ss_pred CcCCcccccCcHHHHHHHHHHHH-HhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhh
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVE-YLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 150 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~-~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 150 (521)
+.++|+||+|.+++|++|++.+. .+.++..|...+..+|+|++|+||||||||++++++|++++.+++.+++.++...+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 45799999999999999998654 58899999999999999999999999999999999999999999999999998888
Q ss_pred hhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC-CcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCcccc
Q 009974 151 VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALT 229 (521)
Q Consensus 151 ~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~-~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~ 229 (521)
.+...+.++.+|..++...|+++|+||+|.++..+... .......+++++..|++...+..++++++||+|+.||++++
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~ 164 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAIL 164 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhc
Confidence 88888999999999988899999999999987654321 11234577899999999888888999999999999999999
Q ss_pred CCCccceEEecCCCCHHHHHHHHHHHhcc---CCCCCcccHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHh--------
Q 009974 230 RPGRFDRHIVVPNPDVRGRQEILELYLQD---KPLADDVDVKAIARGTP--GFNGADLANLVNIAAIKAAVD-------- 296 (521)
Q Consensus 230 r~gRf~~~i~~~~P~~~~r~~il~~~l~~---~~~~~~~~l~~la~~~~--g~s~~dl~~lv~~A~~~a~~~-------- 296 (521)
||||||+.+++++|+.++|.+||+.+++. .....++++..++..+. ||||+||.++|++|+..|.++
T Consensus 165 r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~ 244 (274)
T 2x8a_A 165 RPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSG 244 (274)
T ss_dssp STTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC------
T ss_pred CcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999854 34557889999999754 999999999999999988765
Q ss_pred ---CCCccCHHHHHHHHHHHhc
Q 009974 297 ---GGEKLTATELEFAKDRILM 315 (521)
Q Consensus 297 ---~~~~it~~~~~~a~~~~~~ 315 (521)
+...|+.+||..|++++.+
T Consensus 245 ~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 245 NEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp -----CCBCHHHHHHHHTTCCC
T ss_pred ccccCCeecHHHHHHHHHHhcC
Confidence 2336999999999987654
No 16
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.2e-36 Score=300.83 Aligned_cols=247 Identities=45% Similarity=0.717 Sum_probs=226.4
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
..+..+|++|+|+++++++|.+.+.. +..++.|..+|...++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 44567899999999999999998876 78889999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC----CcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCC
Q 009974 149 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 224 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~----~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~l 224 (521)
.+.|.....++.+|..+....|+||||||+|.+..++... .......+..++..++++....+++||+|||.++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 9999999999999999999999999999999998765432 223467788888888888778899999999999999
Q ss_pred CccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 009974 225 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTAT 304 (521)
Q Consensus 225 d~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~ 304 (521)
|++++|++||+..+.++.|+.++|.+|++.+++......+.++..++..+.|+++++|.++|+.|...|..++...|+.+
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~ 249 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMD 249 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHH
Confidence 99999999999999999999999999999999888887888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 009974 305 ELEFAKDRILMG 316 (521)
Q Consensus 305 ~~~~a~~~~~~~ 316 (521)
|+..|+.++...
T Consensus 250 d~~~al~~~~~~ 261 (285)
T 3h4m_A 250 DFRKAVEKIMEK 261 (285)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999988653
No 17
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=301.15 Aligned_cols=224 Identities=37% Similarity=0.617 Sum_probs=200.5
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-CCCEEEEeCchhh
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-GVPFFYRAGSEFE 147 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~-~~~~~~i~~~~~~ 147 (521)
+.+.++|+||+|++++|+.|++.+.+ +++++.|.. +..+|+++|||||||||||++|+++|+++ +.+|+.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 45668999999999999999998876 778877763 35677999999999999999999999999 8999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCC-cccHHHHHHHHHhhhcCc-cCCceEEEeecCCCCCCC
Q 009974 148 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFE-QNEGIILMAATNLPDILD 225 (521)
Q Consensus 148 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~-~~~~~~l~~ll~~l~~~~-~~~~vivI~ttn~~~~ld 225 (521)
..|.|...+.++.+|..++..+|+||||||+|.+.+.+.... ......+++++..++++. ...+++||+|||+|+.+|
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld 163 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLD 163 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCC
Confidence 999999999999999999999999999999999988765432 335678899999999875 467899999999999999
Q ss_pred ccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 009974 226 PALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 296 (521)
Q Consensus 226 ~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~ 296 (521)
++++| ||+..+++++|+.++|.+|++.++...+.. .+.++..+++.+.|||++||.++|++|+..|.++
T Consensus 164 ~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 164 SAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp HHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred HHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999999999999876553 6778999999999999999999999999888765
No 18
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=8.3e-36 Score=302.34 Aligned_cols=226 Identities=36% Similarity=0.615 Sum_probs=199.8
Q ss_pred cCCCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009974 68 MPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 146 (521)
Q Consensus 68 ~~~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 146 (521)
..+.+..+|+||+|++++++.|++.+.+ +..+..|.. +..+++++|||||||||||++|+++|++++.+|+.++++++
T Consensus 9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l 87 (322)
T 3eie_A 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 87 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred eecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHH
Confidence 3456778999999999999999998876 667766655 56778899999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC-CcccHHHHHHHHHhhhcCc-cCCceEEEeecCCCCCC
Q 009974 147 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFE-QNEGIILMAATNLPDIL 224 (521)
Q Consensus 147 ~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~-~~~~~~~l~~ll~~l~~~~-~~~~vivI~ttn~~~~l 224 (521)
...+.|...+.++.+|..++...|+||||||+|.+...+... ........++++..+++.. ...+++||+|||+|+.|
T Consensus 88 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~l 167 (322)
T 3eie_A 88 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQL 167 (322)
T ss_dssp HTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGS
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhC
Confidence 999999999999999999999999999999999998766432 3345778889999999874 56789999999999999
Q ss_pred CccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 009974 225 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 296 (521)
Q Consensus 225 d~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~ 296 (521)
|++++| ||+..+++++|+.++|.+|++.++...+.. .+.++..++..+.|||++||.++|++|...|.++
T Consensus 168 d~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~ 238 (322)
T 3eie_A 168 DSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238 (322)
T ss_dssp CHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHH
T ss_pred CHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999 999999999999999999999999877644 6778999999999999999999999999888775
No 19
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=6.2e-35 Score=285.72 Aligned_cols=242 Identities=60% Similarity=0.972 Sum_probs=216.3
Q ss_pred CCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 69 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 69 ~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
+..+..+|+|++|.++++.+++++...+..+..+...+...|+|++|+||||||||++++++++.++.+++.+++.++..
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence 45667899999999999999999998888888888999999999999999999999999999999999999999998887
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcC----CCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCC
Q 009974 149 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQ----WEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 224 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~----~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~l 224 (521)
.+.+...+.+..+|+.+....|+++|+||+|.++..+.. ........+++++..+++......++++++||.|+.+
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~l 167 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 167 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhC
Confidence 777777788899999998778999999999999765532 1223456788999999988777789999999999999
Q ss_pred CccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 009974 225 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTAT 304 (521)
Q Consensus 225 d~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~ 304 (521)
|++++|++||++.+.++.|+.++|.+|++.+++...+..+.++..++..+.|++++||.++|++|...|.+++...||.+
T Consensus 168 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~ 247 (254)
T 1ixz_A 168 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMK 247 (254)
T ss_dssp CGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHH
Confidence 99999999999999999999999999999999887777888899999999999999999999999999999888899999
Q ss_pred HHHHHH
Q 009974 305 ELEFAK 310 (521)
Q Consensus 305 ~~~~a~ 310 (521)
|+++|+
T Consensus 248 dl~~a~ 253 (254)
T 1ixz_A 248 DLEEAA 253 (254)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998874
No 20
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=7.1e-35 Score=299.27 Aligned_cols=228 Identities=36% Similarity=0.613 Sum_probs=192.2
Q ss_pred cccCCCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCc
Q 009974 66 EVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 144 (521)
Q Consensus 66 ~~~~~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~ 144 (521)
.+....+..+|+||+|++++++.|++.+.+ +..+..|.. +..+++++|||||||||||++|+++|++++.+|+.++++
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~ 118 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 118 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHH
Confidence 344566778999999999999999998876 677877765 567889999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC-CcccHHHHHHHHHhhhcCcc-CCceEEEeecCCCC
Q 009974 145 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFEQ-NEGIILMAATNLPD 222 (521)
Q Consensus 145 ~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~-~~~~~~~l~~ll~~l~~~~~-~~~vivI~ttn~~~ 222 (521)
++...+.|...+.++.+|..++...|+||||||+|.+...+... ......+.++++..++++.. ..+++||++||+++
T Consensus 119 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 119 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 198 (355)
T ss_dssp HHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG
T ss_pred HHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc
Confidence 99999999999999999999999999999999999998765432 23346678899999998754 56799999999999
Q ss_pred CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 009974 223 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 296 (521)
Q Consensus 223 ~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~ 296 (521)
.+|++++| ||+..+++++|+.++|.+||+.++...+.. .+.++..|++.+.||+++||.++|++|...|.++
T Consensus 199 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 199 QLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp GSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999876543 6778999999999999999999999999988875
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=1.1e-34 Score=308.44 Aligned_cols=242 Identities=42% Similarity=0.688 Sum_probs=220.3
Q ss_pred CcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhh
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 150 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 150 (521)
...+|++|+|.++++++|++.+.. +.+++.|..+|..+|+++||+||||||||++|+++|++++.+|+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 346899999999999999999887 7899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCc-ccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCcccc
Q 009974 151 VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG-HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALT 229 (521)
Q Consensus 151 ~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~-~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~ 229 (521)
.|.....++.+|..+..+.|++|||||||.+..+++...+ ....+++.|+..|++.....+++||+|||+++.||++++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~ 358 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR 358 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHh
Confidence 9999999999999999999999999999999887654332 345788899999998888889999999999999999999
Q ss_pred CCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCC----------
Q 009974 230 RPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGE---------- 299 (521)
Q Consensus 230 r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~---------- 299 (521)
|+|||+..+++++|+.++|.+||+.+++...+..+.++..++..+.|++++||.++|++|+..|.++...
T Consensus 359 r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~ 438 (489)
T 3hu3_A 359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETID 438 (489)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCC
T ss_pred CCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 9999999999999999999999999999888888889999999999999999999999999999887644
Q ss_pred -------ccCHHHHHHHHHHH
Q 009974 300 -------KLTATELEFAKDRI 313 (521)
Q Consensus 300 -------~it~~~~~~a~~~~ 313 (521)
.|+.+|+..|+..+
T Consensus 439 ~~~~~~~~vt~edf~~Al~~~ 459 (489)
T 3hu3_A 439 AEVMNSLAVTMDDFRWALSQS 459 (489)
T ss_dssp HHHHHHCCBCHHHHHHHHTSH
T ss_pred hhhcccCcCCHHHHHHHHHhC
Confidence 36777777776644
No 22
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=5.8e-34 Score=282.77 Aligned_cols=243 Identities=59% Similarity=0.971 Sum_probs=216.7
Q ss_pred cCCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009974 68 MPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 147 (521)
Q Consensus 68 ~~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 147 (521)
....+..+|+|++|.++++.+++++...+..+..+...+...|+|++|+||||||||++++++++.++.+++.+++.++.
T Consensus 31 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~ 110 (278)
T 1iy2_A 31 LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110 (278)
T ss_dssp BCCCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence 34457789999999999999999999988888888889999999999999999999999999999999999999999888
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC----CcccHHHHHHHHHhhhcCccCCceEEEeecCCCCC
Q 009974 148 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 223 (521)
Q Consensus 148 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~----~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ 223 (521)
..+.+...+.+..+|+.+....|+++|+||+|.++..+... .......+++++..+++......++++++||.|+.
T Consensus 111 ~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp HSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTS
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchh
Confidence 77777777888999999988889999999999987654321 22345678889999998777777999999999999
Q ss_pred CCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 009974 224 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 303 (521)
Q Consensus 224 ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~ 303 (521)
+|++++|++||++.+.+++|+.++|.+||+.+++...+..++++..++..+.|++++||+++|++|...|..++...|+.
T Consensus 191 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~ 270 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITM 270 (278)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCH
T ss_pred CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCH
Confidence 99999999999999999999999999999999988777788889999999999999999999999999999888889999
Q ss_pred HHHHHHH
Q 009974 304 TELEFAK 310 (521)
Q Consensus 304 ~~~~~a~ 310 (521)
+|+++|+
T Consensus 271 ~dl~~a~ 277 (278)
T 1iy2_A 271 KDLEEAA 277 (278)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998874
No 23
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=8.2e-37 Score=301.28 Aligned_cols=248 Identities=54% Similarity=0.879 Sum_probs=216.5
Q ss_pred CCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 69 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 69 ~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
++.+..+|++|+|++++++.+.+++..+..++.|...+...|+++||+||||||||++|+++|++++.|++.++++++..
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC-----CcccHHHHHHHHHhhhcCcc-CCceEEEeecCCCC
Q 009974 149 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-----EGHTKKTLHQLLVEMDGFEQ-NEGIILMAATNLPD 222 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~-----~~~~~~~l~~ll~~l~~~~~-~~~vivI~ttn~~~ 222 (521)
.+.|.+...++.+|..+....|+||||||+|.+...+... .......++.++..+++... ..+++||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 8888877778889999998899999999999997654211 12223456778888887654 34599999999999
Q ss_pred CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccC
Q 009974 223 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 302 (521)
Q Consensus 223 ~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it 302 (521)
.+|++++|+|||+..+.+++|+.++|.++|+.+++...+..+.++..++..+.|++++||.++|++|...|..++...|+
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~ 242 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVR 242 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCC
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcC
Confidence 99999999999999999999999999999999998887777888899999999999999999999999998887888999
Q ss_pred HHHHHHHHHHHhcC
Q 009974 303 ATELEFAKDRILMG 316 (521)
Q Consensus 303 ~~~~~~a~~~~~~~ 316 (521)
.+++..|+.++.+.
T Consensus 243 ~~~~~~a~~~~~~~ 256 (268)
T 2r62_A 243 QQHLKEAVERGIAG 256 (268)
T ss_dssp HHHHHTSCTTCCCC
T ss_pred HHHHHHHHHHHhhc
Confidence 99999888765544
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=1.8e-33 Score=297.12 Aligned_cols=228 Identities=36% Similarity=0.605 Sum_probs=192.3
Q ss_pred cccCCCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-CCCEEEEeC
Q 009974 66 EVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-GVPFFYRAG 143 (521)
Q Consensus 66 ~~~~~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~-~~~~~~i~~ 143 (521)
.+....+..+|+||+|++++++.|.+.+.+ +..+..|.. +..+|+++||+||||||||++|+++|+++ +.+|+.+++
T Consensus 123 ~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~ 201 (444)
T 2zan_A 123 AIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 201 (444)
T ss_dssp -CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECC
T ss_pred ceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeH
Confidence 344566778999999999999999998865 677776653 35677999999999999999999999999 899999999
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC-CcccHHHHHHHHHhhhcCc-cCCceEEEeecCCC
Q 009974 144 SEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFE-QNEGIILMAATNLP 221 (521)
Q Consensus 144 ~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~-~~~~~~~l~~ll~~l~~~~-~~~~vivI~ttn~~ 221 (521)
+++...|.|.....++.+|..++...|+||||||+|.+.+.+... .......+++++..++++. ...+++||+|||+|
T Consensus 202 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~ 281 (444)
T 2zan_A 202 SDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP 281 (444)
T ss_dssp C---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCG
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCc
Confidence 999999999999999999999999999999999999998766543 3345778899999999875 36789999999999
Q ss_pred CCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 009974 222 DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 296 (521)
Q Consensus 222 ~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~ 296 (521)
+.+|++++| ||+..+.+++|+.++|..|++.++...+.. .+.++..++..+.|||++||.++|++|+..|.++
T Consensus 282 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 282 WVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp GGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999876542 5778999999999999999999999999988765
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-31 Score=275.12 Aligned_cols=247 Identities=31% Similarity=0.527 Sum_probs=210.1
Q ss_pred ccCCCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCch
Q 009974 67 VMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 145 (521)
Q Consensus 67 ~~~~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~ 145 (521)
+....+..+|++|+|++++++.|.+.+.. +..+..|...+ ..++++||+||||||||++|+++|++++.+|+.+++++
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~ 152 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASS 152 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGG
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHH
Confidence 34455678999999999999999998876 67777766554 67889999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC-CcccHHHHHHHHHhhhcCc--cCCceEEEeecCCCC
Q 009974 146 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFE--QNEGIILMAATNLPD 222 (521)
Q Consensus 146 ~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~-~~~~~~~l~~ll~~l~~~~--~~~~vivI~ttn~~~ 222 (521)
+...+.|.....++.+|..+....|+||||||+|.+...+... .......++.++..+++.. ...+++||+|||.++
T Consensus 153 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 153 LTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp GCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 9999999999999999999999999999999999998765432 2334577888999998764 346799999999999
Q ss_pred CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC----
Q 009974 223 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG---- 297 (521)
Q Consensus 223 ~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~---- 297 (521)
.++++++| ||+..+++++|+.++|.++++.++...... .+.++..++..+.||+++||..+|+.|+..+.++-
T Consensus 233 ~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~ 310 (357)
T 3d8b_A 233 EIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTAD 310 (357)
T ss_dssp GBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC--
T ss_pred hCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999 999999999999999999999998765433 45678999999999999999999999998887742
Q ss_pred --------CCccCHHHHHHHHHHHhcC
Q 009974 298 --------GEKLTATELEFAKDRILMG 316 (521)
Q Consensus 298 --------~~~it~~~~~~a~~~~~~~ 316 (521)
...|+.+|+..|+.++.+.
T Consensus 311 ~~~~~~~~~~~i~~~d~~~al~~~~ps 337 (357)
T 3d8b_A 311 IATITPDQVRPIAYIDFENAFRTVRPS 337 (357)
T ss_dssp --------CCCBCHHHHHHHHHHHGGG
T ss_pred hccccccccCCcCHHHHHHHHHhcCCC
Confidence 3579999999999987653
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.98 E-value=7.3e-32 Score=269.83 Aligned_cols=242 Identities=36% Similarity=0.538 Sum_probs=205.1
Q ss_pred CCCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009974 69 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 147 (521)
Q Consensus 69 ~~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 147 (521)
...+..+|++++|++++++.|.+.+.. +.+++.|...+ .+++++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 13 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 91 (297)
T 3b9p_A 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT 91 (297)
T ss_dssp CCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh
Confidence 455667999999999999999998876 56676666554 4578999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC-CcccHHHHHHHHHhhhcCccC---CceEEEeecCCCCC
Q 009974 148 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFEQN---EGIILMAATNLPDI 223 (521)
Q Consensus 148 ~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~-~~~~~~~l~~ll~~l~~~~~~---~~vivI~ttn~~~~ 223 (521)
..+.+.....++.+|..+....|+||||||+|.+...+... ........+.++..+++.... .+++||++||+++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~ 171 (297)
T 3b9p_A 92 SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQE 171 (297)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGG
T ss_pred hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhh
Confidence 88888888999999999999999999999999998765432 223466778888888876543 57999999999999
Q ss_pred CCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC-----
Q 009974 224 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG----- 297 (521)
Q Consensus 224 ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~----- 297 (521)
++++++| ||+..+++++|+.++|..|++.++...+.. ++.++..++..+.|+++++|.++|+.|+..+.++.
T Consensus 172 l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~ 249 (297)
T 3b9p_A 172 LDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQV 249 (297)
T ss_dssp BCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC----
T ss_pred CCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999 999999999999999999999998765432 45668899999999999999999999999888764
Q ss_pred -------CCccCHHHHHHHHHHH
Q 009974 298 -------GEKLTATELEFAKDRI 313 (521)
Q Consensus 298 -------~~~it~~~~~~a~~~~ 313 (521)
...|+.+|+..|+.++
T Consensus 250 ~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 250 KCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp ----CCCCCCCCHHHHHHHTTSC
T ss_pred ccccccccCCcCHHHHHHHHHHc
Confidence 2579999999887654
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=5.8e-31 Score=273.61 Aligned_cols=245 Identities=32% Similarity=0.530 Sum_probs=199.2
Q ss_pred ccCCCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCch
Q 009974 67 VMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 145 (521)
Q Consensus 67 ~~~~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~ 145 (521)
+....+..+|++|+|++.+++.|.+.+.. +..+..|...+ .+++++||+||||||||++|+++|++++.+|+.++|++
T Consensus 105 ~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~ 183 (389)
T 3vfd_A 105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS 183 (389)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC
T ss_pred hhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH
Confidence 34455677899999999999999998876 55666666555 45789999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCC-CcccHHHHHHHHHhhhcCcc--CCceEEEeecCCCC
Q 009974 146 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFEQ--NEGIILMAATNLPD 222 (521)
Q Consensus 146 ~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~-~~~~~~~l~~ll~~l~~~~~--~~~vivI~ttn~~~ 222 (521)
+...+.|.....++.+|..+....|+||||||||.+...+... .......++.++..+++... ..+++||+|||+++
T Consensus 184 l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~ 263 (389)
T 3vfd_A 184 LTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQ 263 (389)
T ss_dssp C-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGG
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCch
Confidence 9999999999999999999999999999999999997765432 22356777888988887654 46799999999999
Q ss_pred CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh-----
Q 009974 223 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD----- 296 (521)
Q Consensus 223 ~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~----- 296 (521)
.++++++| ||+..++++.|+.++|.+|++.++...... .+.++..++..+.|+++++|..+++.|+..+.++
T Consensus 264 ~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~ 341 (389)
T 3vfd_A 264 ELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQ 341 (389)
T ss_dssp GCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC-
T ss_pred hcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999 999999999999999999999999775433 4557889999999999999999999999988876
Q ss_pred -------CCCccCHHHHHHHHHHHh
Q 009974 297 -------GGEKLTATELEFAKDRIL 314 (521)
Q Consensus 297 -------~~~~it~~~~~~a~~~~~ 314 (521)
....|+.+|+..++.++.
T Consensus 342 ~~~~~~~~~~~i~~~d~~~al~~~~ 366 (389)
T 3vfd_A 342 VKNMSASEMRNIRLSDFTESLKKIK 366 (389)
T ss_dssp --CCSSSCCCCCCHHHHHHHHHHCC
T ss_pred hhccchhhcCCcCHHHHHHHHHHcC
Confidence 345799999999988653
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=3.8e-33 Score=313.95 Aligned_cols=228 Identities=41% Similarity=0.724 Sum_probs=201.5
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
..+..+|++++|++++|+.|.+.+.+ +.++..|..++..++.++||+||||||||++|+++|++++.+++.++++++..
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh
Confidence 44567899999999999999998876 67788888888899999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCC----cccHHHHHHHHHhhhcCccCCceEEEeecCCCCCC
Q 009974 149 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 224 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~----~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~l 224 (521)
.|.|...+.++.+|+.++...||||||||+|.++..+.... ....+++++|+..|+++....+++||+|||+++.|
T Consensus 550 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~l 629 (806)
T 1ypw_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp CCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGG
T ss_pred hhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccC
Confidence 99999999999999999999999999999999988775432 23567889999999998888899999999999999
Q ss_pred CccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC
Q 009974 225 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG 297 (521)
Q Consensus 225 d~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~ 297 (521)
|++++|||||+..+++++|+.++|..||+.++++.++..++++..+++.+.|||++||.++|++|...|.++.
T Consensus 630 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp SCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred CHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888888899999999999999999999999999997765
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.97 E-value=1.7e-31 Score=266.97 Aligned_cols=225 Identities=18% Similarity=0.238 Sum_probs=159.9
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhhhhhHHHHHHHHHH----HhcCCcEEEEccccc
Q 009974 105 LGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAA----KKKAPCIIFIDEIDA 180 (521)
Q Consensus 105 ~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a----~~~~p~Il~IDEiD~ 180 (521)
.+.+.|+++|||||||||||++|+++|++++.+|+.++++++.+.+.|.....++.+|..+ +...||||||||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 3677899999999999999999999999999999999999999999999999999999998 567899999999999
Q ss_pred cccCCcCCCc---ccHHHHHHHHHhhhcCc-----------cCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHH
Q 009974 181 VGSTRKQWEG---HTKKTLHQLLVEMDGFE-----------QNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVR 246 (521)
Q Consensus 181 l~~~~~~~~~---~~~~~l~~ll~~l~~~~-----------~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~ 246 (521)
+++.++.... ....+.+.|+..+|+.. ...+++||+|||+++.+|++++|+|||++.+. .|+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~ 188 (293)
T 3t15_A 111 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 188 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHH
T ss_pred hcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHH
Confidence 9875443221 33456678888887432 45679999999999999999999999999887 47999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHH-------HHHHHHHHH-hCCCccCHHHHHHHHHHHhcCcc
Q 009974 247 GRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLV-------NIAAIKAAV-DGGEKLTATELEFAKDRILMGTE 318 (521)
Q Consensus 247 ~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv-------~~A~~~a~~-~~~~~it~~~~~~a~~~~~~~~~ 318 (521)
+|.+|++.++... +++...++..+.||++++|..+- ..+.....+ .+-+.+.. +++....
T Consensus 189 ~r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~~g~~~~~~--------~~~~~~~ 256 (293)
T 3t15_A 189 DRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGD--------KLLNSFD 256 (293)
T ss_dssp HHHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHTCSTTCHH--------HHTSCSS
T ss_pred HHHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH--------HHHcCCC
Confidence 9999999988753 45678888888899998886431 111111111 11112211 1222211
Q ss_pred ccccccchHHHHHHHHHHhhhHHHhh
Q 009974 319 RKTMFISEESKKLTAYHESGHAIVAF 344 (521)
Q Consensus 319 ~~~~~~~~~~~~~~a~heaghavv~~ 344 (521)
....+++......++||+||+++..
T Consensus 257 -~~~~~~~~~~~~~~l~~~g~~~~~e 281 (293)
T 3t15_A 257 -GPPTFEQPKMTIEKLLEYGNMLVQE 281 (293)
T ss_dssp -CSCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred -CCCCCCCccccHHHHHHHHHHHHHH
Confidence 1223444566778999999999875
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=9.3e-28 Score=270.17 Aligned_cols=243 Identities=42% Similarity=0.681 Sum_probs=218.1
Q ss_pred CcCCcccccCcHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhh
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 150 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 150 (521)
+..+|+||+|+++++++|.+++.. +.+++.|..++..++.++||+||||||||++|+++|++++.+++.+++.++...+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 457899999999999999999987 8999999999999999999999999999999999999999999999999999989
Q ss_pred hhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCc-ccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCcccc
Q 009974 151 VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG-HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALT 229 (521)
Q Consensus 151 ~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~-~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~ 229 (521)
.+.....++.+|..+....|+++||||+|.+..++..... .....+++++..+++...+..+++|++||+++.+|+++.
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~ 358 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR 358 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTT
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHh
Confidence 9999999999999999999999999999999887654332 346677889999999888889999999999999999999
Q ss_pred CCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCC----------
Q 009974 230 RPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGE---------- 299 (521)
Q Consensus 230 r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~---------- 299 (521)
+++||++.+.++.|+.++|.+|++.++....+..+.++..++..+.|++++++..++++|+..+.++...
T Consensus 359 r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~ 438 (806)
T 1ypw_A 359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETID 438 (806)
T ss_dssp STTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCC
T ss_pred cccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhccc
Confidence 9999999999999999999999999999888888889999999999999999999999999888765433
Q ss_pred -------ccCHHHHHHHHHHHh
Q 009974 300 -------KLTATELEFAKDRIL 314 (521)
Q Consensus 300 -------~it~~~~~~a~~~~~ 314 (521)
.++.+++..++....
T Consensus 439 ~~~~~~~~v~~~d~~~al~~~~ 460 (806)
T 1ypw_A 439 AEVMNSLAVTMDDFRWALSQSN 460 (806)
T ss_dssp HHHHTTCCCCTTHHHHHHHHSC
T ss_pred hhhhhhhhhhhhhhhccccccC
Confidence 345566666666543
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.91 E-value=2.9e-26 Score=242.96 Aligned_cols=199 Identities=25% Similarity=0.304 Sum_probs=143.6
Q ss_pred cCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEEeCchhhhhh
Q 009974 73 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSEFEEMF 150 (521)
Q Consensus 73 ~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~--~~~~~i~~~~~~~~~ 150 (521)
...|++++|++++++.+..++..++. +..+|+++||+||||||||++|+++|++++ .+|+.++++++...+
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~ 105 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTE 105 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSS
T ss_pred hhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHh
Confidence 35699999999999999998876543 455678999999999999999999999999 999999999999999
Q ss_pred hhhhhHHHHHHHHHH---HhcCCcEEEEccccccccCCcCCCccc-H-------------------HHHHHHHHhhh--c
Q 009974 151 VGVGARRVRSLFQAA---KKKAPCIIFIDEIDAVGSTRKQWEGHT-K-------------------KTLHQLLVEMD--G 205 (521)
Q Consensus 151 ~g~~~~~i~~~f~~a---~~~~p~Il~IDEiD~l~~~~~~~~~~~-~-------------------~~l~~ll~~l~--~ 205 (521)
.|..+. ++..|..+ +...||||||||+|.+++++....... . ...+.++..++ +
T Consensus 106 ~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~ 184 (456)
T 2c9o_A 106 IKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKER 184 (456)
T ss_dssp SCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTT
T ss_pred hhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhcc
Confidence 998887 89999999 778899999999999988765431100 0 11233555554 3
Q ss_pred CccCCceEEEeecCCCCCCCccccCCCccce--EEecCCC--CHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHH
Q 009974 206 FEQNEGIILMAATNLPDILDPALTRPGRFDR--HIVVPNP--DVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGAD 281 (521)
Q Consensus 206 ~~~~~~vivI~ttn~~~~ld~al~r~gRf~~--~i~~~~P--~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~d 281 (521)
......++|++|||+++.+|+++.|+||||+ .+.++.| +.++|.+|++.+.. .++..++..+.| |+|
T Consensus 185 ~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--gad 255 (456)
T 2c9o_A 185 VEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQD 255 (456)
T ss_dssp CCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC----------
T ss_pred CCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hhH
Confidence 3344456667999999999999999999999 5666777 45778888765542 268889999999 999
Q ss_pred HHHHHHH
Q 009974 282 LANLVNI 288 (521)
Q Consensus 282 l~~lv~~ 288 (521)
+.++|+.
T Consensus 256 l~~l~~~ 262 (456)
T 2c9o_A 256 ILSMMGQ 262 (456)
T ss_dssp -------
T ss_pred HHHHHhh
Confidence 9999964
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.90 E-value=4e-23 Score=207.26 Aligned_cols=225 Identities=20% Similarity=0.254 Sum_probs=171.5
Q ss_pred Ccc-cccCcHHHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEEeC
Q 009974 75 TFK-DVKGCDDAKQELVEVVEYLKNPSKFTRLGG---KLPKGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRAG 143 (521)
Q Consensus 75 ~f~-di~G~~~~k~~L~~~v~~l~~~~~~~~~g~---~~p~~vLL~GppGtGKT~la~alA~~~-------~~~~~~i~~ 143 (521)
.++ +|+|++++++.+.+++..+..+..+...|. ..+.++||+||||||||++|+++|+.+ ..+++.+++
T Consensus 28 ~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 28 ELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 455 799999999999999987655555555443 345679999999999999999999987 348999999
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCC-
Q 009974 144 SEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD- 222 (521)
Q Consensus 144 ~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~- 222 (521)
+++...+.|.....+..+|..+ .++||||||+|.+...++. .......++.|+..++. ...++++|++||.+.
T Consensus 108 ~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~-~~~~~~~~~~Ll~~l~~--~~~~~~~i~~~~~~~~ 181 (309)
T 3syl_A 108 DDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE-RDYGQEAIEILLQVMEN--NRDDLVVILAGYADRM 181 (309)
T ss_dssp GGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC----CCTHHHHHHHHHHHHH--CTTTCEEEEEECHHHH
T ss_pred HHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc-ccccHHHHHHHHHHHhc--CCCCEEEEEeCChHHH
Confidence 9998888888888888888887 3579999999999765432 23456788888888885 345678888888653
Q ss_pred ----CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCC-cccHHHHHhc-------CCCCCHHHHHHHHHHHH
Q 009974 223 ----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-DVDVKAIARG-------TPGFNGADLANLVNIAA 290 (521)
Q Consensus 223 ----~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~-~~~l~~la~~-------~~g~s~~dl~~lv~~A~ 290 (521)
.+++++++ ||+.++.|++|+.+++..|++.++......- +..+..++.. ....+++++.++++.|.
T Consensus 182 ~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~ 259 (309)
T 3syl_A 182 ENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRAR 259 (309)
T ss_dssp HHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHH
Confidence 35789998 9999999999999999999999998765432 2234555553 33346899999999988
Q ss_pred HHHHHh----CCCccCHHHHH
Q 009974 291 IKAAVD----GGEKLTATELE 307 (521)
Q Consensus 291 ~~a~~~----~~~~it~~~~~ 307 (521)
..+..+ ....++.+++.
T Consensus 260 ~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 260 LRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHhccCCCCCHHHHh
Confidence 766544 44566666654
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.90 E-value=7.5e-23 Score=210.40 Aligned_cols=220 Identities=20% Similarity=0.274 Sum_probs=166.1
Q ss_pred cCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEEeCchhhhhh
Q 009974 73 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSEFEEMF 150 (521)
Q Consensus 73 ~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~--~~~~i~~~~~~~~~ 150 (521)
..+|++++|++.+++.+..+...+.. +..+++++||+||||||||++|+++|+.++. |++.+++..+...+
T Consensus 40 ~~~~~~ivG~~~~~~~l~~l~~~~~~-------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 112 (368)
T 3uk6_A 40 RQASQGMVGQLAARRAAGVVLEMIRE-------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLE 112 (368)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSS
T ss_pred CcchhhccChHHHHHHHHHHHHHHHc-------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcc
Confidence 34599999999999998888776553 3334579999999999999999999999874 88888876632211
Q ss_pred -------------------------------------------------hhhhhHHHHHHHHHHHh-----c----CCcE
Q 009974 151 -------------------------------------------------VGVGARRVRSLFQAAKK-----K----APCI 172 (521)
Q Consensus 151 -------------------------------------------------~g~~~~~i~~~f~~a~~-----~----~p~I 172 (521)
.|.....++..|..+.. + .|+|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~v 192 (368)
T 3uk6_A 113 MSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGV 192 (368)
T ss_dssp SCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCE
T ss_pred cchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCce
Confidence 11223445555554432 1 2689
Q ss_pred EEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeec-----------CCCCCCCccccCCCccceEEecC
Q 009974 173 IFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT-----------NLPDILDPALTRPGRFDRHIVVP 241 (521)
Q Consensus 173 l~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~tt-----------n~~~~ld~al~r~gRf~~~i~~~ 241 (521)
|||||+|.+. ...++.|+..++.. ...++++++. |.+..+++++++ ||.. +.|+
T Consensus 193 l~IDEi~~l~----------~~~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~ 257 (368)
T 3uk6_A 193 LFIDEVHMLD----------IESFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTT 257 (368)
T ss_dssp EEEESGGGSB----------HHHHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEEC
T ss_pred EEEhhccccC----------hHHHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEec
Confidence 9999999983 45666777777643 2345555443 357789999999 9965 8999
Q ss_pred CCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 009974 242 NPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRIL 314 (521)
Q Consensus 242 ~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~~ 314 (521)
+|+.+++.+|++.++...+.. ++..+..+++.+.+.+++++.++++.|...|..++...||.+++.+++...+
T Consensus 258 ~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 258 PYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSB
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 999999999999998765443 3445778888887569999999999999999999999999999999987543
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.89 E-value=1.1e-21 Score=199.35 Aligned_cols=217 Identities=20% Similarity=0.201 Sum_probs=168.9
Q ss_pred CCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 69 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 69 ~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
....+.+|++++|.+++++.+...+..... ....+.++||+||||||||++|+++|++++.+|+.+++..+..
T Consensus 21 ~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~ 93 (338)
T 3pfi_A 21 TSLRPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK 93 (338)
T ss_dssp --CCCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS
T ss_pred hccCCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc
Confidence 344556899999999999999998876432 1234568999999999999999999999999999999977642
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc----------------cCCce
Q 009974 149 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE----------------QNEGI 212 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~----------------~~~~v 212 (521)
...+...+.. ...+++|||||+|.+. ....+.|+..++... ...++
T Consensus 94 ------~~~~~~~~~~--~~~~~vl~lDEi~~l~----------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 94 ------SGDLAAILTN--LSEGDILFIDEIHRLS----------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp ------HHHHHHHHHT--CCTTCEEEEETGGGCC----------HHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred ------hhHHHHHHHh--ccCCCEEEEechhhcC----------HHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 2233333332 2456899999999983 344555666555422 01248
Q ss_pred EEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHH
Q 009974 213 ILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAI 291 (521)
Q Consensus 213 ivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~ 291 (521)
++|++||....+++++++ ||+..+.+++|+.+++..+++.++...... ++..+..++..+.| +++++.++++.+..
T Consensus 156 ~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRD 232 (338)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHH
Confidence 999999999999999998 999999999999999999999998766543 33446778886654 78999999999988
Q ss_pred HHHHhCCCccCHHHHHHHHHHH
Q 009974 292 KAAVDGGEKLTATELEFAKDRI 313 (521)
Q Consensus 292 ~a~~~~~~~it~~~~~~a~~~~ 313 (521)
.+...+...|+.+++..++...
T Consensus 233 ~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 233 FADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHhhcCCccCHHHHHHHHHHh
Confidence 8888888899999999888764
No 35
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.86 E-value=8.1e-21 Score=191.63 Aligned_cols=215 Identities=24% Similarity=0.246 Sum_probs=163.1
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhh
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 151 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~ 151 (521)
.+.+|++++|.+++++.+...+...... ...+.++||+||||||||++|+++++.++.+++.++++.+...
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~-- 77 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP-- 77 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH--
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh--
Confidence 3458999999999999999888754311 2345689999999999999999999999999999998876431
Q ss_pred hhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc----------------cCCceEEE
Q 009974 152 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE----------------QNEGIILM 215 (521)
Q Consensus 152 g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~----------------~~~~vivI 215 (521)
..+...|..+ ...+++|||||+|.+. ......++..++... ...++++|
T Consensus 78 ----~~l~~~l~~~-~~~~~~l~lDEi~~l~----------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 78 ----GDLAAILANS-LEEGDILFIDEIHRLS----------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp ----HHHHHHHTTT-CCTTCEEEETTTTSCC----------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred ----HHHHHHHHHh-ccCCCEEEEECCcccc----------cchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 1222222221 1457899999999983 223344454444321 11358899
Q ss_pred eecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 009974 216 AATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAA 294 (521)
Q Consensus 216 ~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~ 294 (521)
++||.+..+++++.+ ||+..+.+++|+.+++..+++.++...+.. ++..+..++..+.| +++++.++++.+...+.
T Consensus 143 ~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 143 GATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTTST
T ss_pred EeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 999999999999998 998899999999999999999998765443 33447788888865 78999999998877776
Q ss_pred HhCCCccCHHHHHHHHHHH
Q 009974 295 VDGGEKLTATELEFAKDRI 313 (521)
Q Consensus 295 ~~~~~~it~~~~~~a~~~~ 313 (521)
..+...|+.+++..++...
T Consensus 220 ~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 220 VAGEEVITRERALEALAAL 238 (324)
T ss_dssp TTSCSCCCHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHh
Confidence 6677789999998887754
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.84 E-value=1.3e-20 Score=188.70 Aligned_cols=234 Identities=22% Similarity=0.277 Sum_probs=161.1
Q ss_pred ccccCcHHHHHHHHHHHHH-hcCchhhhh-cCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh-hhhhh
Q 009974 77 KDVKGCDDAKQELVEVVEY-LKNPSKFTR-LGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-MFVGV 153 (521)
Q Consensus 77 ~di~G~~~~k~~L~~~v~~-l~~~~~~~~-~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~-~~~g~ 153 (521)
++|+|++++++.+...+.. +........ .....|.++||+||||||||++|+++|+.++.+++.++++.+.. .|.|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 3589999999999987764 222111110 01245679999999999999999999999999999999998865 45543
Q ss_pred h-hHHHHHHHHHH-----HhcCCcEEEEccccccccCCcCCCcc--cHHHHHHHHHhhhcCc--------cCCceEEEee
Q 009974 154 G-ARRVRSLFQAA-----KKKAPCIIFIDEIDAVGSTRKQWEGH--TKKTLHQLLVEMDGFE--------QNEGIILMAA 217 (521)
Q Consensus 154 ~-~~~i~~~f~~a-----~~~~p~Il~IDEiD~l~~~~~~~~~~--~~~~l~~ll~~l~~~~--------~~~~vivI~t 217 (521)
. ...++.++..+ ....++||||||+|.+.......... ...+.+.|+..+++.. ...++++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 2 34456655532 11235799999999997655322111 1234667777777531 2346788888
Q ss_pred ----cCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHh-----------ccCCC---CCcccHHHHHhcCC----
Q 009974 218 ----TNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYL-----------QDKPL---ADDVDVKAIARGTP---- 275 (521)
Q Consensus 218 ----tn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l-----------~~~~~---~~~~~l~~la~~~~---- 275 (521)
++.+..+++++.+ ||+..+.|++|+.+++.+|++..+ ..... -++..++.++..+.
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 252 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNE 252 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcc
Confidence 4577889999998 999899999999999999998311 11221 13334666776652
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHhC-----CC-ccCHHHHHHHHHH
Q 009974 276 ---GFNGADLANLVNIAAIKAAVDG-----GE-KLTATELEFAKDR 312 (521)
Q Consensus 276 ---g~s~~dl~~lv~~A~~~a~~~~-----~~-~it~~~~~~a~~~ 312 (521)
+.+.+++.++++.+...+.... .. .|+.+++.+++..
T Consensus 253 ~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 253 KTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred cccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 4688999999988775544322 11 4999999888764
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.84 E-value=1.5e-20 Score=185.36 Aligned_cols=223 Identities=20% Similarity=0.246 Sum_probs=151.1
Q ss_pred cccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh-hhhhhhh
Q 009974 76 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE-EMFVGVG 154 (521)
Q Consensus 76 f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~-~~~~g~~ 154 (521)
.+.++|.++..+.+......+.. .....+...++++||+||||||||++|+++|+..+.+|+.+++++.. ....+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~--~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQ--QTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHH--HHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHH--HHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 45678888876666663222111 11122355678999999999999999999999999999999887532 2122233
Q ss_pred hHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc-cCCceEEEeecCCCCCCCc-cccCCC
Q 009974 155 ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-QNEGIILMAATNLPDILDP-ALTRPG 232 (521)
Q Consensus 155 ~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~-~~~~vivI~ttn~~~~ld~-al~r~g 232 (521)
...++.+|..+....+++|||||+|.+.+.+..........++.|...+++.. ...+++||+|||.++.+++ .+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~-- 187 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN-- 187 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT--
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc--
Confidence 45678889988878889999999999976654333345566677777777654 3456889999999988887 4555
Q ss_pred ccceEEecCCCCH-HHHHHHHHHHhccCCCCCcccHHHHHhcCCCC----CHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 009974 233 RFDRHIVVPNPDV-RGRQEILELYLQDKPLADDVDVKAIARGTPGF----NGADLANLVNIAAIKAAVDGGEKLTATELE 307 (521)
Q Consensus 233 Rf~~~i~~~~P~~-~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~----s~~dl~~lv~~A~~~a~~~~~~~it~~~~~ 307 (521)
||+..+.+|+++. ++...++.. ...+ ++.++..+++.+.|+ +.+++.++++.|... ......+++.
T Consensus 188 rf~~~i~~p~l~~r~~i~~i~~~---~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~-----~~~~~~~~~~ 258 (272)
T 1d2n_A 188 AFSTTIHVPNIATGEQLLEALEL---LGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQM-----DPEYRVRKFL 258 (272)
T ss_dssp TSSEEEECCCEEEHHHHHHHHHH---HTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTS-----CGGGHHHHHH
T ss_pred ccceEEcCCCccHHHHHHHHHHh---cCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhh-----chHHHHHHHH
Confidence 9999988876655 444444443 2233 456688889888886 567777777654332 2334444554
Q ss_pred HHHH
Q 009974 308 FAKD 311 (521)
Q Consensus 308 ~a~~ 311 (521)
.++.
T Consensus 259 ~~l~ 262 (272)
T 1d2n_A 259 ALLR 262 (272)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 38
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.82 E-value=2.9e-20 Score=200.69 Aligned_cols=222 Identities=23% Similarity=0.241 Sum_probs=149.0
Q ss_pred CcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh------
Q 009974 75 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE------ 148 (521)
Q Consensus 75 ~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~------ 148 (521)
-++|++|+++++..+.+.+..-.... .. .+..++|+||||||||++|+++|+.++.++..+++..+..
T Consensus 79 l~~di~G~~~vk~~i~~~~~l~~~~~-----~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 79 LDEEHHGLEKVKERILEYLAVQKLTK-----SL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHHHHSS-----SC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhcc-----cC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 46779999999999987665321110 11 3458999999999999999999999999999999877543
Q ss_pred ---hhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCcc-------------CCce
Q 009974 149 ---MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ-------------NEGI 212 (521)
Q Consensus 149 ---~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~-------------~~~v 212 (521)
.|.|.....+...|..+....| |+||||+|.+...... ...+.|+..++.... ..++
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v 225 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG------DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKV 225 (543)
T ss_dssp -----------CHHHHHHTTCSSSE-EEEEEESSSCC---------------CCGGGTCTTTTTBCCCSSSCCCCBCSSC
T ss_pred HHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc------CHHHHHHHHHhhhhcceeecccCCeeecccce
Confidence 4566666667777887766665 9999999999664321 234566666653221 1568
Q ss_pred EEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhc-----cCCCC------CcccHHHHHh-cCCCCCHH
Q 009974 213 ILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ-----DKPLA------DDVDVKAIAR-GTPGFNGA 280 (521)
Q Consensus 213 ivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~-----~~~~~------~~~~l~~la~-~~~g~s~~ 280 (521)
+||+|||.++.++++|++ ||+ .+.++.|+.+++..|++.++. ...+. ++..+..++. .+...+.+
T Consensus 226 ~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR 302 (543)
T 3m6a_A 226 LFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVR 302 (543)
T ss_dssp EEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSH
T ss_pred EEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchh
Confidence 999999999999999999 995 799999999999999998872 22221 1233555554 34334566
Q ss_pred HHHHHHHHHHHHHHHh------CCCccCHHHHHHHHHH
Q 009974 281 DLANLVNIAAIKAAVD------GGEKLTATELEFAKDR 312 (521)
Q Consensus 281 dl~~lv~~A~~~a~~~------~~~~it~~~~~~a~~~ 312 (521)
++++.+..+...+... +...|+.+++.+++..
T Consensus 303 ~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 303 SLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 6666655555444332 3347899999888753
No 39
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.81 E-value=2.8e-19 Score=188.19 Aligned_cols=220 Identities=18% Similarity=0.250 Sum_probs=153.8
Q ss_pred CcCCccccc-CcHH--HHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeC
Q 009974 72 NVKTFKDVK-GCDD--AKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAG 143 (521)
Q Consensus 72 ~~~~f~di~-G~~~--~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~-----~~~~~~i~~ 143 (521)
+..+|++++ |... +...+..+. ..+ .. +.+++||||||||||++|+++++.+ +.+++++++
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a---~~~-------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVA---KHP-------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHH---HST-------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCCChhhcCCCCchHHHHHHHHHHH---hCC-------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 345899988 5433 333333322 222 12 5689999999999999999999988 889999999
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCC
Q 009974 144 SEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 223 (521)
Q Consensus 144 ~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ 223 (521)
..+...+.+.........|.......|+||||||+|.+..+ ......++..++........+|+++.+.+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~--------~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 169 EKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK--------TGVQTELFHTFNELHDSGKQIVICSDREPQK 240 (440)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC--------HHHHHHHHHHHHHHHTTTCEEEEEESSCGGG
T ss_pred HHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC--------hHHHHHHHHHHHHHHHCCCeEEEEECCCHHH
Confidence 88866554433222222343333336789999999999542 1233344444444334445566666555554
Q ss_pred ---CCccccCCCccc--eEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC
Q 009974 224 ---LDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG 297 (521)
Q Consensus 224 ---ld~al~r~gRf~--~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~ 297 (521)
+++++++ ||. ..+.+++|+.++|..|++.++...++. ++..+..++..+.| +.+++.++++.+...|...+
T Consensus 241 l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~~ 317 (440)
T 2z4s_A 241 LSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTG 317 (440)
T ss_dssp CSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhC
Confidence 7888988 886 789999999999999999988654332 23347788888875 89999999999988876655
Q ss_pred CCccCHHHHHHHHHHHh
Q 009974 298 GEKLTATELEFAKDRIL 314 (521)
Q Consensus 298 ~~~it~~~~~~a~~~~~ 314 (521)
..||.+++.+++....
T Consensus 318 -~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 318 -KEVDLKEAILLLKDFI 333 (440)
T ss_dssp -SCCCHHHHHHHTSTTT
T ss_pred -CCCCHHHHHHHHHHHh
Confidence 5799999998887543
No 40
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.81 E-value=7.8e-19 Score=165.94 Aligned_cols=202 Identities=21% Similarity=0.187 Sum_probs=147.2
Q ss_pred CCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeCch
Q 009974 71 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSE 145 (521)
Q Consensus 71 ~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~-----~~~~~~i~~~~ 145 (521)
..+.+|++++|.++.++.+.+.+.. .. +.+++|+||||||||++++++++++ ..+++.++++.
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVER-----------KN-IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHT-----------TC-CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhC-----------CC-CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 4456899999999999888887752 11 2259999999999999999999875 46688888765
Q ss_pred hhhhhhhhhhHHHHHHHHHHH------hcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecC
Q 009974 146 FEEMFVGVGARRVRSLFQAAK------KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 219 (521)
Q Consensus 146 ~~~~~~g~~~~~i~~~f~~a~------~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn 219 (521)
.... ..+...+.... ...+++|+|||+|.+.. ...+.++..++. ...++.+|++||
T Consensus 79 ~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----------~~~~~l~~~l~~--~~~~~~~i~~~~ 140 (226)
T 2chg_A 79 ERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA----------DAQAALRRTMEM--YSKSCRFILSCN 140 (226)
T ss_dssp TTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH----------HHHHHHHHHHHH--TTTTEEEEEEES
T ss_pred ccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH----------HHHHHHHHHHHh--cCCCCeEEEEeC
Confidence 4332 11222222221 24578999999999832 334455555554 245678888999
Q ss_pred CCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 009974 220 LPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGG 298 (521)
Q Consensus 220 ~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~ 298 (521)
.+..+++++.+ ||. .+.+++|+.++..++++.++...+.. ++..+..++..+.| +++.+.++++.+...+
T Consensus 141 ~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~----- 211 (226)
T 2chg_A 141 YVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG----- 211 (226)
T ss_dssp CGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC-----
T ss_pred ChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC-----
Confidence 99999999988 887 89999999999999999988654433 33446777776655 7888888877665443
Q ss_pred CccCHHHHHHHHH
Q 009974 299 EKLTATELEFAKD 311 (521)
Q Consensus 299 ~~it~~~~~~a~~ 311 (521)
+.||.+++++++.
T Consensus 212 ~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 EVVDADTIYQITA 224 (226)
T ss_dssp SCBCHHHHHHHHH
T ss_pred ceecHHHHHHHhc
Confidence 6899999998865
No 41
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.81 E-value=7.7e-19 Score=180.87 Aligned_cols=223 Identities=21% Similarity=0.250 Sum_probs=160.5
Q ss_pred CcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCch
Q 009974 75 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSE 145 (521)
Q Consensus 75 ~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---------~~~~~~i~~~~ 145 (521)
.+++++|.++..+.+...+.... ....+.+++|+||||||||++++++++.+ +.++++++|..
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~--------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPAL--------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGT--------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH--------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 45789999998888877664321 12345689999999999999999999988 88999999875
Q ss_pred hhhhh----------------hhhhh-HHHHHHHHHHHh-cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc
Q 009974 146 FEEMF----------------VGVGA-RRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 207 (521)
Q Consensus 146 ~~~~~----------------~g~~~-~~i~~~f~~a~~-~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~ 207 (521)
....+ .+... .....++..... +.|++|||||+|.+...+ .....+..++..++...
T Consensus 89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~-----~~~~~l~~l~~~~~~~~ 163 (387)
T 2v1u_A 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP-----GGQDLLYRITRINQELG 163 (387)
T ss_dssp SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST-----THHHHHHHHHHGGGCC-
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC-----CCChHHHhHhhchhhcC
Confidence 43211 01111 223444444433 347899999999995431 13456777777665433
Q ss_pred cCCceEEEeecCCC---CCCCccccCCCccce-EEecCCCCHHHHHHHHHHHhcc--CC-CCCcccHHHHHhcCC---CC
Q 009974 208 QNEGIILMAATNLP---DILDPALTRPGRFDR-HIVVPNPDVRGRQEILELYLQD--KP-LADDVDVKAIARGTP---GF 277 (521)
Q Consensus 208 ~~~~vivI~ttn~~---~~ld~al~r~gRf~~-~i~~~~P~~~~r~~il~~~l~~--~~-~~~~~~l~~la~~~~---g~ 277 (521)
...++.+|++||.+ ..+++.+.+ ||.. .+.+++|+.+++.++++.++.. .. ..++..+..+++.+. |
T Consensus 164 ~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G- 240 (387)
T 2v1u_A 164 DRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHG- 240 (387)
T ss_dssp ----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSC-
T ss_pred CCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcc-
Confidence 25678899999987 678888888 8875 8999999999999999998764 11 122334666666665 5
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 009974 278 NGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 313 (521)
Q Consensus 278 s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~ 313 (521)
+++.+.++++.|...|..++...|+.+++..++...
T Consensus 241 ~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 241 DARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 788999999999988888888999999999998875
No 42
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.80 E-value=2.9e-19 Score=180.56 Aligned_cols=206 Identities=20% Similarity=0.256 Sum_probs=141.9
Q ss_pred ccCCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009974 67 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 146 (521)
Q Consensus 67 ~~~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 146 (521)
+.....+.+|++++|++++++.+.+++. ....|+.+|++||||||||++|+++|++++.+++++++++.
T Consensus 16 ~~~k~rP~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~ 84 (324)
T 3u61_B 16 LEQKYRPSTIDECILPAFDKETFKSITS-----------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC 84 (324)
T ss_dssp HHHHSCCCSTTTSCCCHHHHHHHHHHHH-----------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC
T ss_pred HHHhhCCCCHHHHhCcHHHHHHHHHHHH-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc
Confidence 3445566799999999999998888876 24566688999999999999999999999999999998774
Q ss_pred hhhhhhhhhHHHHHHHHHHHhc-----CCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCC
Q 009974 147 EEMFVGVGARRVRSLFQAAKKK-----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 221 (521)
Q Consensus 147 ~~~~~g~~~~~i~~~f~~a~~~-----~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~ 221 (521)
. ...++..+...... .+.||||||+|.+.+ ....+.|+..++.. ..++.+|++||.+
T Consensus 85 ~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~---------~~~~~~L~~~le~~--~~~~~iI~~~n~~ 146 (324)
T 3u61_B 85 K-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL---------AESQRHLRSFMEAY--SSNCSIIITANNI 146 (324)
T ss_dssp C-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG---------HHHHHHHHHHHHHH--GGGCEEEEEESSG
T ss_pred C-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc---------HHHHHHHHHHHHhC--CCCcEEEEEeCCc
Confidence 3 22334433332222 568999999999941 23455666666642 3567888899999
Q ss_pred CCCCccccCCCccceEEecCCCCHHHHHHHHHHHh-------ccCCCC-Cc-ccHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 009974 222 DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYL-------QDKPLA-DD-VDVKAIARGTPGFNGADLANLVNIAAIK 292 (521)
Q Consensus 222 ~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l-------~~~~~~-~~-~~l~~la~~~~g~s~~dl~~lv~~A~~~ 292 (521)
..+++++++ ||. .+.|++|+.+++.+|++.++ ...+.. ++ ..+..++..+.| +.+++.+.++.+.
T Consensus 147 ~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~~~~-- 220 (324)
T 3u61_B 147 DGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGELDSYS-- 220 (324)
T ss_dssp GGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHHHHHG--
T ss_pred cccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHHHHHh--
Confidence 999999998 994 79999999999876655543 222322 23 457778887654 4555555555443
Q ss_pred HHHhCCCccCHHHHHHHHH
Q 009974 293 AAVDGGEKLTATELEFAKD 311 (521)
Q Consensus 293 a~~~~~~~it~~~~~~a~~ 311 (521)
....||.+++..+..
T Consensus 221 ----~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 221 ----SKGVLDAGILSLVTN 235 (324)
T ss_dssp ----GGTCBCC--------
T ss_pred ----ccCCCCHHHHHHHhC
Confidence 335688888876654
No 43
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.80 E-value=2.1e-20 Score=194.64 Aligned_cols=171 Identities=22% Similarity=0.225 Sum_probs=81.7
Q ss_pred Ccc-cccCcHHHHHHHHHHHHH-hcCchhhhhcCC-CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh-hh
Q 009974 75 TFK-DVKGCDDAKQELVEVVEY-LKNPSKFTRLGG-KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-MF 150 (521)
Q Consensus 75 ~f~-di~G~~~~k~~L~~~v~~-l~~~~~~~~~g~-~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~-~~ 150 (521)
.|+ +|+|++++|+.|...+.. ++++..+..+.. .+|+++||+||||||||++|+++|+.++.+|+.++++.+.+ .|
T Consensus 12 ~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~ 91 (444)
T 1g41_A 12 ELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY 91 (444)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccce
Confidence 444 789999999999887754 344333333333 35789999999999999999999999999999999999887 58
Q ss_pred hhh-hhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEee-cCCCCCCCccc
Q 009974 151 VGV-GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAA-TNLPDILDPAL 228 (521)
Q Consensus 151 ~g~-~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~t-tn~~~~ld~al 228 (521)
.|. ....++.+|..+... +++||++.+.... ......+++++|+..||++.....+ +++ ||+++.||++|
T Consensus 92 vG~d~e~~lr~lf~~a~~~----~~~De~d~~~~~~--~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL 163 (444)
T 1g41_A 92 VGKEVDSIIRDLTDSAMKL----VRQQEIAKNRARA--EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKL 163 (444)
T ss_dssp CCCCTHHHHHHHHHHHHHH----HHHHHHHSCC-----------------------------------------------
T ss_pred eeccHHHHHHHHHHHHHhc----chhhhhhhhhccc--hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHH
Confidence 885 788899999998764 4589998875432 2334578899999999998766554 444 99999999999
Q ss_pred cCCCccceEEecCCCCHH-HHHHHHH
Q 009974 229 TRPGRFDRHIVVPNPDVR-GRQEILE 253 (521)
Q Consensus 229 ~r~gRf~~~i~~~~P~~~-~r~~il~ 253 (521)
+|+||||+.|++++|+.. .|.+|+.
T Consensus 164 ~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 164 REGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp --------------------------
T ss_pred HcCCCcceEEEEcCCCCccchhhhhc
Confidence 999999999999999987 7777764
No 44
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.80 E-value=3.5e-19 Score=187.40 Aligned_cols=205 Identities=24% Similarity=0.301 Sum_probs=149.1
Q ss_pred CcCCcccccCcHHHH---HHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 72 NVKTFKDVKGCDDAK---QELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 72 ~~~~f~di~G~~~~k---~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
.+.+|++++|++.++ ..|...+.. ... .++||+||||||||++|+++++.++.+|+.+++....
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~-----------~~~-~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~- 87 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEA-----------GHL-HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG- 87 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHH-----------TCC-CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC-
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHc-----------CCC-cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC-
Confidence 346899999999998 566666542 112 4899999999999999999999999999999875432
Q ss_pred hhhhhhhHHHHHHHHHHH----hcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeec--CCCC
Q 009974 149 MFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT--NLPD 222 (521)
Q Consensus 149 ~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~tt--n~~~ 222 (521)
.+.++.+|..+. ...++||||||+|.+... ..+.|+..++. ..+++|++| |...
T Consensus 88 ------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~----------~q~~LL~~le~----~~v~lI~att~n~~~ 147 (447)
T 3pvs_A 88 ------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKS----------QQDAFLPHIED----GTITFIGATTENPSF 147 (447)
T ss_dssp ------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC----------------CCHHHHHT----TSCEEEEEESSCGGG
T ss_pred ------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH----------HHHHHHHHHhc----CceEEEecCCCCccc
Confidence 234555555544 346789999999999432 23456666663 456777666 4445
Q ss_pred CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCC-------C-CCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 009974 223 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP-------L-ADDVDVKAIARGTPGFNGADLANLVNIAAIKAA 294 (521)
Q Consensus 223 ~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~-------~-~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~ 294 (521)
.+++++++ |+. ++.+++|+.+++..+++.++.... . -++..+..++..+.| +.+++.++++.+...+.
T Consensus 148 ~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~a~ 223 (447)
T 3pvs_A 148 ELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADMAE 223 (447)
T ss_dssp SSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHSC
T ss_pred ccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcc
Confidence 78999998 885 788999999999999999987521 1 133347778887654 78999999988877653
Q ss_pred Hh--CCCccCHHHHHHHHHHH
Q 009974 295 VD--GGEKLTATELEFAKDRI 313 (521)
Q Consensus 295 ~~--~~~~it~~~~~~a~~~~ 313 (521)
.. +...||.+++.+++.+.
T Consensus 224 ~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 224 VDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp BCTTSCEECCHHHHHHHHTCC
T ss_pred cccCCCCccCHHHHHHHHhhh
Confidence 22 44689999999887643
No 45
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.80 E-value=7.2e-19 Score=180.68 Aligned_cols=216 Identities=23% Similarity=0.280 Sum_probs=146.6
Q ss_pred ccCcHHHHHHHHHHHHHhcCchhhh---hcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhh-hhhhh
Q 009974 79 VKGCDDAKQELVEVVEYLKNPSKFT---RLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FVGVG 154 (521)
Q Consensus 79 i~G~~~~k~~L~~~v~~l~~~~~~~---~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~-~~g~~ 154 (521)
|+|++++++.+...+.......... .....++.++||+||||||||++|+++|+.++.||+.++|+++... |.|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 6999999999998875321111100 0112356799999999999999999999999999999999988743 77765
Q ss_pred -hHHHHHHHHHH----HhcCCcEEEEccccccccCCcCCCcc----cHHHHHHHHHhhhcCc------------------
Q 009974 155 -ARRVRSLFQAA----KKKAPCIIFIDEIDAVGSTRKQWEGH----TKKTLHQLLVEMDGFE------------------ 207 (521)
Q Consensus 155 -~~~i~~~f~~a----~~~~p~Il~IDEiD~l~~~~~~~~~~----~~~~l~~ll~~l~~~~------------------ 207 (521)
...++.+|..+ ....++||||||+|.+...+...... ...+++.|+..|++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 55667777765 33456899999999998765432211 2337888888888421
Q ss_pred -cCCceEEEeecCCC----------CC-----------------------------------CCccccCCCccceEEecC
Q 009974 208 -QNEGIILMAATNLP----------DI-----------------------------------LDPALTRPGRFDRHIVVP 241 (521)
Q Consensus 208 -~~~~vivI~ttn~~----------~~-----------------------------------ld~al~r~gRf~~~i~~~ 241 (521)
...++++|+++|.. .. +.++|.. ||+..+.++
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~ 254 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLN 254 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecC
Confidence 12234455554432 11 6777776 999999999
Q ss_pred CCCHHHHHHHHHH----Hhc-------cCCCC---CcccHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHh
Q 009974 242 NPDVRGRQEILEL----YLQ-------DKPLA---DDVDVKAIAR--GTPGFNGADLANLVNIAAIKAAVD 296 (521)
Q Consensus 242 ~P~~~~r~~il~~----~l~-------~~~~~---~~~~l~~la~--~~~g~s~~dl~~lv~~A~~~a~~~ 296 (521)
+|+.+++.+|+.. ++. ..... ++..++.++. ....+..++|+++++++...+..+
T Consensus 255 pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 255 ELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 9999999999886 221 11211 2223555664 334456788999888887766554
No 46
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.79 E-value=1.9e-18 Score=174.72 Aligned_cols=196 Identities=21% Similarity=0.303 Sum_probs=135.9
Q ss_pred cCCccccc-C--cHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchh
Q 009974 73 VKTFKDVK-G--CDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 146 (521)
Q Consensus 73 ~~~f~di~-G--~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~ 146 (521)
..+|++++ | +..+...+..++. .+ ...+.+++|+||||||||++|+++++.+ +.+++++++.++
T Consensus 7 ~~~f~~fv~g~~~~~a~~~~~~~~~---~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 7 KYTLENFIVGEGNRLAYEVVKEALE---NL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp TCCSSSCCCCTTTHHHHHHHHHHHH---TT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcccCCCCCcHHHHHHHHHHHHh---Cc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 45899997 4 3344444444443 21 1235689999999999999999999988 899999999888
Q ss_pred hhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCC---C
Q 009974 147 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD---I 223 (521)
Q Consensus 147 ~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~---~ 223 (521)
...+.+.........|.... ..+++|||||+|.+..++ .....++..++........+|+++++.+. .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~--------~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~ 147 (324)
T 1l8q_A 77 AQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE--------RTQIEFFHIFNTLYLLEKQIILASDRHPQKLDG 147 (324)
T ss_dssp HHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH--------HHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTT
T ss_pred HHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh--------HHHHHHHHHHHHHHHCCCeEEEEecCChHHHHH
Confidence 76655443322222333332 237899999999985421 22333444443333344567777777766 6
Q ss_pred CCccccCCCccc--eEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 009974 224 LDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIK 292 (521)
Q Consensus 224 ld~al~r~gRf~--~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~ 292 (521)
+++++.+ ||. ..+.+++ +.+++..|++.++...+.. ++..+..++..+ .+.+++.++++.+...
T Consensus 148 l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 148 VSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp SCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHH
T ss_pred hhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHc
Confidence 7899988 886 6889999 9999999999998765443 334477888888 4789999998876654
No 47
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.79 E-value=6.1e-19 Score=189.52 Aligned_cols=229 Identities=17% Similarity=0.220 Sum_probs=148.8
Q ss_pred ccccCCCCcCCcccccCcHHHHHHHHHHHHHhcC--chhhhhcCC---CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 009974 65 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKN--PSKFTRLGG---KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF 139 (521)
Q Consensus 65 ~~~~~~~~~~~f~di~G~~~~k~~L~~~v~~l~~--~~~~~~~g~---~~p~~vLL~GppGtGKT~la~alA~~~~~~~~ 139 (521)
..+.....+.+|++++|++++++.|.+++..... +..|...|. ..++++||+||||||||++|+++|++++.+++
T Consensus 27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i 106 (516)
T 1sxj_A 27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL 106 (516)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 3445566677999999999999999988875221 122222232 35689999999999999999999999999999
Q ss_pred EEeCchhhhhhhhhhh-------HHHHHHHHHH-----HhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc
Q 009974 140 YRAGSEFEEMFVGVGA-------RRVRSLFQAA-----KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 207 (521)
Q Consensus 140 ~i~~~~~~~~~~g~~~-------~~i~~~f~~a-----~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~ 207 (521)
.++++++......... ..+..+|..+ ....++||||||+|.+..... ..++.++..++.
T Consensus 107 ~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~-------~~l~~L~~~l~~-- 177 (516)
T 1sxj_A 107 EQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR-------GGVGQLAQFCRK-- 177 (516)
T ss_dssp EECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST-------THHHHHHHHHHH--
T ss_pred EEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH-------HHHHHHHHHHHh--
Confidence 9999887554321110 0122333333 235678999999999965321 234455555543
Q ss_pred cCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHH
Q 009974 208 QNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLV 286 (521)
Q Consensus 208 ~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv 286 (521)
.+..+++++++.....+++ +. |+...+.|++|+.+++.+++...+...+.. ++..+..+++.+.| +.+.+.+++
T Consensus 178 ~~~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G-diR~~i~~L 252 (516)
T 1sxj_A 178 TSTPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG-DIRQVINLL 252 (516)
T ss_dssp CSSCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT-CHHHHHHHH
T ss_pred cCCCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHH
Confidence 2334555555444344443 43 455699999999999999998877553322 33347888887754 445555554
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHHHH
Q 009974 287 NIAAIKAAVDGGEKLTATELEFAKDR 312 (521)
Q Consensus 287 ~~A~~~a~~~~~~~it~~~~~~a~~~ 312 (521)
+.+ +. +...|+.+++..++..
T Consensus 253 ~~~---~~--~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 253 STI---ST--TTKTINHENINEISKA 273 (516)
T ss_dssp THH---HH--HSSCCCTTHHHHHHHH
T ss_pred HHH---Hh--cCCCCchHHHHHHHHh
Confidence 432 22 4467888888776653
No 48
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.79 E-value=1.5e-17 Score=168.99 Aligned_cols=215 Identities=20% Similarity=0.279 Sum_probs=159.7
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhh
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 151 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~ 151 (521)
.+.+|++++|.+.+++.+...+..-+. ...++.+++|+|||||||||+++++|+.++.++...++..+...
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~-- 90 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKM-------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ-- 90 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHH-------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH--
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH--
Confidence 345899999999988888776653211 12345689999999999999999999999999888776554321
Q ss_pred hhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc--------c--------CCceEEE
Q 009974 152 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--------Q--------NEGIILM 215 (521)
Q Consensus 152 g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~--------~--------~~~vivI 215 (521)
..+..++.. ...++|+||||++.+.. ...+.++..++... . -..+.++
T Consensus 91 ----~~l~~~~~~--~~~~~v~~iDE~~~l~~----------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 91 ----GDMAAILTS--LERGDVLFIDEIHRLNK----------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp ----HHHHHHHHH--CCTTCEEEEETGGGCCH----------HHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred ----HHHHHHHHH--ccCCCEEEEcchhhcCH----------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 123333322 23457999999999842 12222333332211 0 1246778
Q ss_pred eecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 009974 216 AATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAA 294 (521)
Q Consensus 216 ~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~ 294 (521)
++|+++..|++.+++ ||...+.+++|+.+++.++++......+.. ++..+..++..+.| +++.+.++++.+...|.
T Consensus 155 ~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a~ 231 (334)
T 1in4_A 155 GATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDMLT 231 (334)
T ss_dssp EEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHH
T ss_pred EecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence 899999999999998 998899999999999999999988655443 23347788888876 78999999999988888
Q ss_pred HhCCCccCHHHHHHHHHHHh
Q 009974 295 VDGGEKLTATELEFAKDRIL 314 (521)
Q Consensus 295 ~~~~~~it~~~~~~a~~~~~ 314 (521)
..+...||.+++.++++...
T Consensus 232 ~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 232 VVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHTCSSBCHHHHHHHHHHHT
T ss_pred HcCCCCcCHHHHHHHHHHhC
Confidence 88888999999999998754
No 49
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.78 E-value=4.2e-18 Score=162.87 Aligned_cols=204 Identities=20% Similarity=0.306 Sum_probs=148.7
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 137 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~------------ 137 (521)
...+..|++++|.++.++.|...+.. ...|+.++|+||||||||++++++++.++..
T Consensus 16 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
T 1njg_A 16 KWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 84 (250)
T ss_dssp HTCCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred ccCCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 34456899999999999988887753 2234579999999999999999999877432
Q ss_pred ------------EEEEeCchhhhhhhhhhhHHHHHHHHHHH----hcCCcEEEEccccccccCCcCCCcccHHHHHHHHH
Q 009974 138 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 201 (521)
Q Consensus 138 ------------~~~i~~~~~~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~ 201 (521)
++.++... ......++.++..+. ...|.+|+|||+|.+. ...++.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~----------~~~~~~l~~ 148 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS----------RHSFNALLK 148 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC----------HHHHHHHHH
T ss_pred HHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc----------HHHHHHHHH
Confidence 22222211 011233455555432 2357899999999982 345666777
Q ss_pred hhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHH
Q 009974 202 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGA 280 (521)
Q Consensus 202 ~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~ 280 (521)
.++.. ..++.+|++||.+..+++.+.+ |+ ..+.+++|+.++..++++.++...+.. ++..+..+++.+.| +++
T Consensus 149 ~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~ 222 (250)
T 1njg_A 149 TLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLR 222 (250)
T ss_dssp HHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHH
T ss_pred HHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHH
Confidence 77642 4568888899998889988887 75 689999999999999999998765433 33447788888876 899
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009974 281 DLANLVNIAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 281 dl~~lv~~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
.+.++++.|... +...||.+++++++
T Consensus 223 ~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 223 DALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred HHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 999999877533 34589999998764
No 50
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.78 E-value=1.7e-18 Score=175.45 Aligned_cols=214 Identities=21% Similarity=0.142 Sum_probs=150.7
Q ss_pred CcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh--hhhhh
Q 009974 75 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE--EMFVG 152 (521)
Q Consensus 75 ~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~--~~~~g 152 (521)
.+++++|++++++.+...+.. +.++||+||||||||++|+++|+.++.+++.+++.... ....|
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred hccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 578899999998877765542 13799999999999999999999999999998874211 11111
Q ss_pred hhhHH-HHHHHHHHHhcC---CcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcC---------ccCCceEEEeecC
Q 009974 153 VGARR-VRSLFQAAKKKA---PCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF---------EQNEGIILMAATN 219 (521)
Q Consensus 153 ~~~~~-i~~~f~~a~~~~---p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~---------~~~~~vivI~ttn 219 (521)
..... ....|. .... .+||||||+|.+. ....+.|+..++.. ..+.++++|+|+|
T Consensus 91 ~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~----------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~n 158 (331)
T 2r44_A 91 TMIYNQHKGNFE--VKKGPVFSNFILADEVNRSP----------AKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQN 158 (331)
T ss_dssp EEEEETTTTEEE--EEECTTCSSEEEEETGGGSC----------HHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEEC
T ss_pred ceeecCCCCceE--eccCcccccEEEEEccccCC----------HHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecC
Confidence 10000 000000 0011 2699999999872 34555566655532 1244678888888
Q ss_pred CCC-----CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-----------------------CcccHHHHH
Q 009974 220 LPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-----------------------DDVDVKAIA 271 (521)
Q Consensus 220 ~~~-----~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-----------------------~~~~l~~la 271 (521)
..+ .+++++++ ||+.++.++.|+.+++.+|++.++...... ++..+..++
T Consensus 159 p~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~ 236 (331)
T 2r44_A 159 PVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYII 236 (331)
T ss_dssp TTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHH
T ss_pred CCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 543 38999999 999899999999999999999987653210 111133333
Q ss_pred hc-------------------CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcC
Q 009974 272 RG-------------------TPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMG 316 (521)
Q Consensus 272 ~~-------------------~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~~~~ 316 (521)
.. ..|.|++.+..+++.|...|..+++..|+.+|+.+++..++..
T Consensus 237 ~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 237 ELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp HHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred HHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 21 1256999999999999999999999999999999999887754
No 51
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.78 E-value=3.7e-18 Score=173.87 Aligned_cols=218 Identities=21% Similarity=0.228 Sum_probs=141.5
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-------C-------
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-------P------- 137 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~-------~------- 137 (521)
+..+|++++|.+++++.+.... + .+ .+.++||+||||||||++|+++++.++. +
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~--~-~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 86 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTA--V-DP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVE 86 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH--H-CG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGG
T ss_pred CCCCchhccChHHHHHHHHHHh--h-CC---------CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccc
Confidence 4568999999999776543222 1 11 1236999999999999999999998862 2
Q ss_pred -------------------EEEEeCchhhhhhhhhhhHHHHHHHHHH---------HhcCCcEEEEccccccccCCcCCC
Q 009974 138 -------------------FFYRAGSEFEEMFVGVGARRVRSLFQAA---------KKKAPCIIFIDEIDAVGSTRKQWE 189 (521)
Q Consensus 138 -------------------~~~i~~~~~~~~~~g~~~~~i~~~f~~a---------~~~~p~Il~IDEiD~l~~~~~~~~ 189 (521)
++.+..........|.. .+...+... ....+++|||||+|.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~------- 157 (350)
T 1g8p_A 87 MIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLE------- 157 (350)
T ss_dssp GSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC-------
T ss_pred cccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCC-------
Confidence 22222111111111110 011112111 01135799999999983
Q ss_pred cccHHHHHHHHHhhhcC-----------ccCCceEEEeecCCCC-CCCccccCCCccceEEecCCC-CHHHHHHHHHHHh
Q 009974 190 GHTKKTLHQLLVEMDGF-----------EQNEGIILMAATNLPD-ILDPALTRPGRFDRHIVVPNP-DVRGRQEILELYL 256 (521)
Q Consensus 190 ~~~~~~l~~ll~~l~~~-----------~~~~~vivI~ttn~~~-~ld~al~r~gRf~~~i~~~~P-~~~~r~~il~~~l 256 (521)
...++.|+..++.- ....++++|+|||..+ .+++++++ ||+.++.+++| +.+++.+|+++++
T Consensus 158 ---~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 158 ---DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp ---HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHH
Confidence 33455666555431 0123689999999754 89999999 99999999999 6777778886632
Q ss_pred c-------------------------------cCCCCCcccHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHhCCCccC
Q 009974 257 Q-------------------------------DKPLADDVDVKAIARGTPG---FNGADLANLVNIAAIKAAVDGGEKLT 302 (521)
Q Consensus 257 ~-------------------------------~~~~~~~~~l~~la~~~~g---~s~~dl~~lv~~A~~~a~~~~~~~it 302 (521)
. ...+ ++..+..++....+ -+.+.+.++++.|...|..+++..|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-s~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~ 311 (350)
T 1g8p_A 233 TYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEA-PNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVG 311 (350)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBC-CHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCC
T ss_pred hcccCchhhccccccchHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCC
Confidence 1 1122 23334445443332 26799999999999999888988999
Q ss_pred HHHHHHHHHHHhcC
Q 009974 303 ATELEFAKDRILMG 316 (521)
Q Consensus 303 ~~~~~~a~~~~~~~ 316 (521)
.+|+.+|+..++..
T Consensus 312 ~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 312 RDHLKRVATMALSH 325 (350)
T ss_dssp HHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887654
No 52
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.77 E-value=2.9e-18 Score=174.76 Aligned_cols=216 Identities=19% Similarity=0.210 Sum_probs=151.0
Q ss_pred ccccCCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC------CCE
Q 009974 65 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG------VPF 138 (521)
Q Consensus 65 ~~~~~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~------~~~ 138 (521)
.++.....+.+|++++|++++++.+...+. ....+ ++||+||||||||++|+++++.++ ..+
T Consensus 25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~-----------~~~~~-~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~ 92 (353)
T 1sxj_D 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLK-----------SANLP-HMLFYGPPGTGKTSTILALTKELYGPDLMKSRI 92 (353)
T ss_dssp -CHHHHTCCSSTTTCCSCCTTHHHHHHHTT-----------CTTCC-CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSE
T ss_pred ccHHHhcCCCCHHHhhCCHHHHHHHHHHHh-----------cCCCC-EEEEECCCCCCHHHHHHHHHHHhCCCcccccce
Confidence 344455667799999999998887776653 12223 499999999999999999999854 468
Q ss_pred EEEeCchhhhhhhhhhhHHHHHHHHHH-------------HhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhc
Q 009974 139 FYRAGSEFEEMFVGVGARRVRSLFQAA-------------KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG 205 (521)
Q Consensus 139 ~~i~~~~~~~~~~g~~~~~i~~~f~~a-------------~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~ 205 (521)
+.+++++.... +.....+.. |... ....+.||||||+|.+. ....+.|+..++.
T Consensus 93 ~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~----------~~~~~~Ll~~le~ 159 (353)
T 1sxj_D 93 LELNASDERGI--SIVREKVKN-FARLTVSKPSKHDLENYPCPPYKIIILDEADSMT----------ADAQSALRRTMET 159 (353)
T ss_dssp EEECSSSCCCH--HHHTTHHHH-HHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC----------HHHHHHHHHHHHH
T ss_pred EEEccccccch--HHHHHHHHH-HhhhcccccchhhcccCCCCCceEEEEECCCccC----------HHHHHHHHHHHHh
Confidence 88888764221 000111111 1110 01235699999999983 2344566666664
Q ss_pred CccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHH
Q 009974 206 FEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLAN 284 (521)
Q Consensus 206 ~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~ 284 (521)
.. ....+|.+||.+..+++++++ |+. .+.+++|+.++...+++..+...+.. ++..+..++..+.| +.+.+.+
T Consensus 160 ~~--~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~ 233 (353)
T 1sxj_D 160 YS--GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRGIT 233 (353)
T ss_dssp TT--TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHHH
T ss_pred cC--CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 32 345666788999999999988 885 88999999999999999988655432 34457888888876 6888888
Q ss_pred HHHHHHHHHHHhCCC-ccCHHHHHHHHH
Q 009974 285 LVNIAAIKAAVDGGE-KLTATELEFAKD 311 (521)
Q Consensus 285 lv~~A~~~a~~~~~~-~it~~~~~~a~~ 311 (521)
+++.+...+.+.+.+ .||.+++..++.
T Consensus 234 ~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 234 LLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 888777666554433 799999987654
No 53
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.77 E-value=1e-17 Score=160.78 Aligned_cols=205 Identities=16% Similarity=0.121 Sum_probs=140.9
Q ss_pred cCCcccccCc---HHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchh
Q 009974 73 VKTFKDVKGC---DDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 146 (521)
Q Consensus 73 ~~~f~di~G~---~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~ 146 (521)
..+|++++|. ..+.+.+..++. . ..+++++|+||||||||++++++++++ +.+++++++.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~---~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAAS---G---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHH---T---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 3689999973 344544444443 1 134689999999999999999999876 478899998877
Q ss_pred hhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCce-EEEeecCCCC---
Q 009974 147 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGI-ILMAATNLPD--- 222 (521)
Q Consensus 147 ~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~v-ivI~ttn~~~--- 222 (521)
...+... +.. ...+.+|+|||+|.+... ......++..++.......+ +|+++++.+.
T Consensus 92 ~~~~~~~--------~~~--~~~~~vliiDe~~~~~~~--------~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 92 ASISTAL--------LEG--LEQFDLICIDDVDAVAGH--------PLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp GGSCGGG--------GTT--GGGSSEEEEETGGGGTTC--------HHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred HHHHHHH--------HHh--ccCCCEEEEeccccccCC--------HHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 6543211 111 134679999999998432 11123344444333233334 5554544444
Q ss_pred CCCccccCCCccc--eEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 009974 223 ILDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGE 299 (521)
Q Consensus 223 ~ld~al~r~gRf~--~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~ 299 (521)
.+++.+.+ ||. ..+.+++|+.+++.++++.++...+.. ++..+..++..+.| +.+++.++++.+...|..++ +
T Consensus 154 ~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~~-~ 229 (242)
T 3bos_A 154 FVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVHQ-R 229 (242)
T ss_dssp CCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHT-C
T ss_pred Hhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhC-C
Confidence 34577777 786 899999999999999999998765443 33446778888765 89999999998888775554 5
Q ss_pred ccCHHHHHHHHH
Q 009974 300 KLTATELEFAKD 311 (521)
Q Consensus 300 ~it~~~~~~a~~ 311 (521)
.||.+++++++.
T Consensus 230 ~It~~~v~~~l~ 241 (242)
T 3bos_A 230 KLTIPFVKEMLR 241 (242)
T ss_dssp CCCHHHHHHHHT
T ss_pred CCcHHHHHHHhh
Confidence 799999988763
No 54
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.76 E-value=9.1e-18 Score=173.10 Aligned_cols=213 Identities=23% Similarity=0.269 Sum_probs=153.4
Q ss_pred cccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-----------CCCEEEEeCc
Q 009974 76 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----------GVPFFYRAGS 144 (521)
Q Consensus 76 f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~-----------~~~~~~i~~~ 144 (521)
.++++|.++..+.+...+..... ...|++++|+||||||||++|+++++++ +.++++++|.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 47899999999999887765322 2345689999999999999999999987 8999999987
Q ss_pred hhh-hhh------h-----------hhh-hHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHH-HHHHHHhhh
Q 009974 145 EFE-EMF------V-----------GVG-ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKT-LHQLLVEMD 204 (521)
Q Consensus 145 ~~~-~~~------~-----------g~~-~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~-l~~ll~~l~ 204 (521)
... ..+ . +.. ...+..++..+.... +||||||+|.+.... .... +..++...
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~------~~~~~l~~l~~~~- 162 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRR------GGDIVLYQLLRSD- 162 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHST------TSHHHHHHHHTSS-
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCC------CCceeHHHHhcCC-
Confidence 643 110 0 111 122344444444443 399999999995432 1233 44444332
Q ss_pred cCccCCceEEEeecCCC---CCCCccccCCCccceEEecCCCCHHHHHHHHHHHhcc----CCCCCcccHHHHHhcCC--
Q 009974 205 GFEQNEGIILMAATNLP---DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD----KPLADDVDVKAIARGTP-- 275 (521)
Q Consensus 205 ~~~~~~~vivI~ttn~~---~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~----~~~~~~~~l~~la~~~~-- 275 (521)
.++.+|++||.+ +.+++.+.+ ||...+.+++|+.++..++++.++.. ..+ ++..+..+++.+.
T Consensus 163 -----~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~i~~~~~~~ 234 (384)
T 2qby_B 163 -----ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY-DDEILSYIAAISAKE 234 (384)
T ss_dssp -----SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC-CSHHHHHHHHHHHTT
T ss_pred -----cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc-CHHHHHHHHHHHHhc
Confidence 678899999987 678888887 88779999999999999999998763 222 3334666776655
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 009974 276 GFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRIL 314 (521)
Q Consensus 276 g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~~ 314 (521)
..+++.+.++++.|...|. +...|+.+++..++....
T Consensus 235 ~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 235 HGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp CCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 1367788888888877765 567899999999988753
No 55
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.75 E-value=6.1e-18 Score=179.46 Aligned_cols=205 Identities=22% Similarity=0.293 Sum_probs=139.0
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEE
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYR 141 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~----------~~~~~~i 141 (521)
.+.+|++|+|.++.++.+.+++.. ..+.++||+||||||||++|+++|+.+ +.+++.+
T Consensus 175 r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 175 KEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 455899999999988877776642 223589999999999999999999986 7889999
Q ss_pred eCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCC
Q 009974 142 AGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 221 (521)
Q Consensus 142 ~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~ 221 (521)
+++ ..|.|.....++.+|..+....|+||||| + .....+.|+..++ +..+.+|++||.+
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~---------~~~a~~~L~~~L~----~g~v~vI~at~~~ 301 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A---------AIDASNILKPSLA----RGELQCIGATTLD 301 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C-----------------CCCTT----SSSCEEEEECCTT
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C---------chhHHHHHHHhhc----CCCEEEEecCCHH
Confidence 887 66778778889999999998889999999 1 1123334444443 5678999999998
Q ss_pred C-----CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccC----CCC-CcccHHHHHhcCC-----CCCHHHHHHHH
Q 009974 222 D-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK----PLA-DDVDVKAIARGTP-----GFNGADLANLV 286 (521)
Q Consensus 222 ~-----~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~----~~~-~~~~l~~la~~~~-----g~s~~dl~~lv 286 (521)
+ .+|+++.| ||. .+.|+.|+.+++..|++.++... +.. .+..+..++..+. .+.+.....++
T Consensus 302 e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll 378 (468)
T 3pxg_A 302 EYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLI 378 (468)
T ss_dssp TTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHH
T ss_pred HHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHH
Confidence 7 68999999 997 59999999999999999887652 221 2333444444322 34466777787
Q ss_pred HHHHHHHHHhCC-CccCHHHHHHHHHH
Q 009974 287 NIAAIKAAVDGG-EKLTATELEFAKDR 312 (521)
Q Consensus 287 ~~A~~~a~~~~~-~~it~~~~~~a~~~ 312 (521)
+.|...+..+.. ..-....++..+.+
T Consensus 379 ~~a~~~~~~~~~~~p~~i~~l~~~i~~ 405 (468)
T 3pxg_A 379 DEAGSKVRLRSFTTPPNLKELEQKLDE 405 (468)
T ss_dssp HHHHHHHHHHTTSCCSSTHHHHHHHHH
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 777766555443 23344455444443
No 56
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.75 E-value=8.9e-18 Score=188.82 Aligned_cols=223 Identities=17% Similarity=0.254 Sum_probs=161.6
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEE
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYR 141 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~----------~~~~~~i 141 (521)
...+|++++|.++..+++.+++. . ..+.++||+||||||||++|+++|+.+ +.+++.+
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l~---~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVLC---R---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred hcCCCCCccCCHHHHHHHHHHHh---c---------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 34589999999998777666543 1 234689999999999999999999976 6668888
Q ss_pred eCchhh--hhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecC
Q 009974 142 AGSEFE--EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 219 (521)
Q Consensus 142 ~~~~~~--~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn 219 (521)
++..+. ..+.|...+.++.+|..+....++||||||+|.+.+...... ......+.|. .+-.+..+.+|++||
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~-~~~~~~~~L~----~~l~~~~~~~I~at~ 323 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG-GQVDAANLIK----PLLSSGKIRVIGSTT 323 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSS-CHHHHHHHHS----SCSSSCCCEEEEEEC
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCc-chHHHHHHHH----HHHhCCCeEEEEEeC
Confidence 877765 356777888999999999887889999999999976543311 1222233332 233456788999998
Q ss_pred CCC-----CCCccccCCCccceEEecCCCCHHHHHHHHHHHhcc----CCC-CCcccHHHHHhcC-----CCCCHHHHHH
Q 009974 220 LPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD----KPL-ADDVDVKAIARGT-----PGFNGADLAN 284 (521)
Q Consensus 220 ~~~-----~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~----~~~-~~~~~l~~la~~~-----~g~s~~dl~~ 284 (521)
.++ .+|+++.| ||+ .+.++.|+.+++.+|++.++.. ... -.+..+..++..+ ..+.+..+..
T Consensus 324 ~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~ 400 (758)
T 1r6b_X 324 YQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_dssp HHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHH
T ss_pred chHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHH
Confidence 753 57899998 997 7999999999999999887653 121 1233345555433 3356778889
Q ss_pred HHHHHHHHHHH----hCCCccCHHHHHHHHHHHh
Q 009974 285 LVNIAAIKAAV----DGGEKLTATELEFAKDRIL 314 (521)
Q Consensus 285 lv~~A~~~a~~----~~~~~it~~~~~~a~~~~~ 314 (521)
++++|...+.. .....|+.+++..++.+..
T Consensus 401 lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 401 VIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 99888766555 2456899999999998764
No 57
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.75 E-value=4.8e-18 Score=156.69 Aligned_cols=159 Identities=23% Similarity=0.366 Sum_probs=116.4
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEE
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYR 141 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~----------~~~~~~i 141 (521)
.+.+|++++|.++..+++.+.+. . ..+.+++|+||||||||++++++++.+ +.+++.+
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQ---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hhccccccccchHHHHHHHHHHh---c---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 34579999999997776666543 1 235689999999999999999999986 7889999
Q ss_pred eCchhh--hhhhhhhhHHHHHHHHHHH-hcCCcEEEEccccccccCCcCC-CcccHHHHHHHHHhhhcCccCCceEEEee
Q 009974 142 AGSEFE--EMFVGVGARRVRSLFQAAK-KKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFEQNEGIILMAA 217 (521)
Q Consensus 142 ~~~~~~--~~~~g~~~~~i~~~f~~a~-~~~p~Il~IDEiD~l~~~~~~~-~~~~~~~l~~ll~~l~~~~~~~~vivI~t 217 (521)
++..+. ..+.+.....+..++..+. ...|+||+|||+|.+...+... .......+..++ + ..++.+|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~---~----~~~~~~i~~ 157 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL---A----RGELHCVGA 157 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH---H----TTSCCEEEE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh---c----cCCeEEEEe
Confidence 988765 3345555667777777664 3557899999999996543211 122233333333 2 356788888
Q ss_pred cCCCC-----CCCccccCCCccceEEecCCCCHHHHHHHH
Q 009974 218 TNLPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEIL 252 (521)
Q Consensus 218 tn~~~-----~ld~al~r~gRf~~~i~~~~P~~~~r~~il 252 (521)
||.+. .+++++.+ ||+ .+.+++|+.+++.+|+
T Consensus 158 ~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 158 TTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 88876 78999998 997 6999999999998875
No 58
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.74 E-value=1.9e-17 Score=166.08 Aligned_cols=208 Identities=21% Similarity=0.223 Sum_probs=145.9
Q ss_pred cCCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEe
Q 009974 68 MPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRA 142 (521)
Q Consensus 68 ~~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~-----~~~~~~i~ 142 (521)
.....+.+|++++|++++++.+.+.+.. ...| ++||+||||||||++|+++++.+ +.+++.++
T Consensus 8 ~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 75 (319)
T 2chq_A 8 VEKYRPRTLDEVVGQDEVIQRLKGYVER-----------KNIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (319)
T ss_dssp TTTTSCSSGGGSCSCHHHHHHHHTTTTT-----------TCCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE
T ss_pred HHhcCCCCHHHHhCCHHHHHHHHHHHhC-----------CCCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe
Confidence 3455567899999999988877765531 2334 49999999999999999999986 34678888
Q ss_pred CchhhhhhhhhhhHHHHHHHHHH-H-hcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCC
Q 009974 143 GSEFEEMFVGVGARRVRSLFQAA-K-KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 220 (521)
Q Consensus 143 ~~~~~~~~~g~~~~~i~~~f~~a-~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~ 220 (521)
+++.... ......+..+.... . ...+.||+|||+|.+. ....+.|+..++. ...++++|++||.
T Consensus 76 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~----------~~~~~~L~~~le~--~~~~~~~i~~~~~ 141 (319)
T 2chq_A 76 ASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT----------ADAQAALRRTMEM--YSKSCRFILSCNY 141 (319)
T ss_dssp TTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC----------HHHHHTTGGGTSS--SSSSEEEEEEESC
T ss_pred CccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC----------HHHHHHHHHHHHh--cCCCCeEEEEeCC
Confidence 8764321 11111222221110 0 1447899999999983 2345566666764 3456788889999
Q ss_pred CCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 009974 221 PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGE 299 (521)
Q Consensus 221 ~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~ 299 (521)
+..+++++.+ |+. .+.+++|+.+++..++..++...+.. ++..+..++..+.| +.+.+.++++.+.. ...
T Consensus 142 ~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~-----~~~ 212 (319)
T 2chq_A 142 VSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAA-----IGE 212 (319)
T ss_dssp GGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHH-----SSS
T ss_pred hhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH-----cCC
Confidence 9999999988 885 89999999999999999998766543 33446777776654 66777676665432 245
Q ss_pred ccCHHHHHHHH
Q 009974 300 KLTATELEFAK 310 (521)
Q Consensus 300 ~it~~~~~~a~ 310 (521)
.||.+++..++
T Consensus 213 ~i~~~~v~~~~ 223 (319)
T 2chq_A 213 VVDADTIYQIT 223 (319)
T ss_dssp CBCHHHHHHHT
T ss_pred CCCHHHHHHHH
Confidence 79988887653
No 59
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.74 E-value=8.6e-18 Score=168.40 Aligned_cols=203 Identities=19% Similarity=0.266 Sum_probs=138.8
Q ss_pred cccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhh---
Q 009974 76 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM--- 149 (521)
Q Consensus 76 f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~--- 149 (521)
.++++|++.+++.+...+........ ...+++.++||+||||||||++|+++|+.+ +.+++.++|+.+...
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~~~~~---~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTCS---CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcCCC---CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 34678999999999988876421100 012233579999999999999999999987 567999999876432
Q ss_pred --hhhhhh-----HHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCcc---------CCceE
Q 009974 150 --FVGVGA-----RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ---------NEGII 213 (521)
Q Consensus 150 --~~g~~~-----~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~---------~~~vi 213 (521)
+.|... .....+........++||||||+|.+ ....++.|+..++.... -.+++
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l----------~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 162 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA----------HPDVFNILLQMLDDGRLTDSHGRTVDFRNTV 162 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS----------CHHHHHHHHHHHHHSEEECTTSCEEECTTEE
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc----------CHHHHHHHHHHHhcCEEEcCCCCEEECCCcE
Confidence 111100 00012222333344589999999998 23566677776664221 13577
Q ss_pred EEeecCC--------------------------CCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccC-------C
Q 009974 214 LMAATNL--------------------------PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK-------P 260 (521)
Q Consensus 214 vI~ttn~--------------------------~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~-------~ 260 (521)
+|+|||. ...+++++.+ ||+..+.+++|+.+++..|+++++... .
T Consensus 163 iI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~ 240 (311)
T 4fcw_A 163 IIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKR 240 (311)
T ss_dssp EEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTT
T ss_pred EEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999998 4467888887 999999999999999999999988642 1
Q ss_pred CC---CcccHHHHHhcCC--CCCHHHHHHHHHHHHHHH
Q 009974 261 LA---DDVDVKAIARGTP--GFNGADLANLVNIAAIKA 293 (521)
Q Consensus 261 ~~---~~~~l~~la~~~~--g~s~~dl~~lv~~A~~~a 293 (521)
.. ++..+..++.... ..+.++|+++++++...+
T Consensus 241 ~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~ 278 (311)
T 4fcw_A 241 ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETP 278 (311)
T ss_dssp CEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHH
T ss_pred cEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHH
Confidence 11 2334666776554 567888988888776544
No 60
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.73 E-value=6.7e-17 Score=166.10 Aligned_cols=224 Identities=21% Similarity=0.251 Sum_probs=157.2
Q ss_pred CCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc------CCCEEEEeCchhh
Q 009974 74 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA------GVPFFYRAGSEFE 147 (521)
Q Consensus 74 ~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~------~~~~~~i~~~~~~ 147 (521)
..+++++|.++..+.|.+.+.... ....+..++|+||||||||++++++++.+ +.++++++|....
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~--------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLY--------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGG--------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHH--------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 345889999998877776554321 12345689999999999999999999988 8899999986432
Q ss_pred hhh----------------hhh-hhHHHHHHHHHHHhc-CCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccC
Q 009974 148 EMF----------------VGV-GARRVRSLFQAAKKK-APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQN 209 (521)
Q Consensus 148 ~~~----------------~g~-~~~~i~~~f~~a~~~-~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~ 209 (521)
... .+. .......++...... .|++|+|||+|.+..... ...+..++..++.. ..
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~------~~~l~~l~~~~~~~-~~ 161 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN------DDILYKLSRINSEV-NK 161 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC------STHHHHHHHHHHSC-CC
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc------CHHHHHHhhchhhc-CC
Confidence 110 011 122234444444433 389999999999964321 23566666666543 34
Q ss_pred CceEEEeecCCC---CCCCccccCCCccc-eEEecCCCCHHHHHHHHHHHhccC---CCCCcccHHHHHhcCC--CCCHH
Q 009974 210 EGIILMAATNLP---DILDPALTRPGRFD-RHIVVPNPDVRGRQEILELYLQDK---PLADDVDVKAIARGTP--GFNGA 280 (521)
Q Consensus 210 ~~vivI~ttn~~---~~ld~al~r~gRf~-~~i~~~~P~~~~r~~il~~~l~~~---~~~~~~~l~~la~~~~--g~s~~ 280 (521)
.++.+|++||.+ ..+++.+.+ ||. +.+.+++|+.++..++++.++... ....+..+..++..+. +.+++
T Consensus 162 ~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r 239 (386)
T 2qby_A 162 SKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDAR 239 (386)
T ss_dssp --EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHH
T ss_pred CeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHH
Confidence 578888898877 467777777 675 589999999999999999877531 1112333556666554 13688
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 009974 281 DLANLVNIAAIKAAVDGGEKLTATELEFAKDRIL 314 (521)
Q Consensus 281 dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~~ 314 (521)
.+.++++.|...+..++...|+.+++..|+....
T Consensus 240 ~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 240 RALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 8888999998888888888999999999988754
No 61
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.73 E-value=2.6e-17 Score=169.83 Aligned_cols=230 Identities=21% Similarity=0.242 Sum_probs=143.5
Q ss_pred cccCcHHHHHHHHHHHHH-hcCchhh-----------------hhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 009974 78 DVKGCDDAKQELVEVVEY-LKNPSKF-----------------TRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF 139 (521)
Q Consensus 78 di~G~~~~k~~L~~~v~~-l~~~~~~-----------------~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~ 139 (521)
+|+|++++|+.|...+.. ++..... .......+.++||+||||||||++|+++|+.++.||+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 489999999999987732 1111100 0012345668999999999999999999999999999
Q ss_pred EEeCchhh-hhhhhhh-hHHHHHHHHHHH----hcCCcEEEEccccccccCCcCCC----cccHHHHHHHHHhhhcCc--
Q 009974 140 YRAGSEFE-EMFVGVG-ARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFE-- 207 (521)
Q Consensus 140 ~i~~~~~~-~~~~g~~-~~~i~~~f~~a~----~~~p~Il~IDEiD~l~~~~~~~~----~~~~~~l~~ll~~l~~~~-- 207 (521)
.+++..+. ..+.|.. ...+..++..+. ...++||||||+|.+...+.... ......++.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3444443 334555554432 23568999999999976533211 112336777888887531
Q ss_pred -----------------cCCceEEEeecCCC-----------------------------------------CCCCcccc
Q 009974 208 -----------------QNEGIILMAATNLP-----------------------------------------DILDPALT 229 (521)
Q Consensus 208 -----------------~~~~vivI~ttn~~-----------------------------------------~~ld~al~ 229 (521)
...++++|+++|.. ..+.+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 12456778777621 12445666
Q ss_pred CCCccceEEecCCCCHHHHHHHHHH----Hhc-------cCCCC---CcccHHHHHhcCC--CCCHHHHHHHHHHHHHHH
Q 009974 230 RPGRFDRHIVVPNPDVRGRQEILEL----YLQ-------DKPLA---DDVDVKAIARGTP--GFNGADLANLVNIAAIKA 293 (521)
Q Consensus 230 r~gRf~~~i~~~~P~~~~r~~il~~----~l~-------~~~~~---~~~~l~~la~~~~--g~s~~dl~~lv~~A~~~a 293 (521)
+ ||+..+.|++++.++...|+.. ++. ..... ++..+..++.... ..+.+++.++++.+...+
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~ 339 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDI 339 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 6 8988999999999999998862 211 11111 2333566666533 356899999998888766
Q ss_pred HHhCC------CccCHHHHHHH
Q 009974 294 AVDGG------EKLTATELEFA 309 (521)
Q Consensus 294 ~~~~~------~~it~~~~~~a 309 (521)
..+.. ..||.+++..+
T Consensus 340 ~~~~~~~~~~~~~i~~~~v~~~ 361 (376)
T 1um8_A 340 MFDLPKLKGSEVRITKDCVLKQ 361 (376)
T ss_dssp HHTGGGGTTSEEEECHHHHTTS
T ss_pred HhhccCCCCCEEEEeHHHhcCC
Confidence 55422 15788877543
No 62
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.73 E-value=7e-18 Score=168.83 Aligned_cols=159 Identities=13% Similarity=0.111 Sum_probs=115.6
Q ss_pred ccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEEeCchhhh
Q 009974 79 VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYRAGSEFEE 148 (521)
Q Consensus 79 i~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~----------~~~~~~i~~~~~~~ 148 (521)
|.|.++..+++...+... .....|.+++|+||||||||++++++++++ ...++++||..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~--------i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDS--------LMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHH--------hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 566666666666555432 123456799999999999999999999988 35688999876433
Q ss_pred h----------hh------hhhhHHHHHHHHHH--HhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCC
Q 009974 149 M----------FV------GVGARRVRSLFQAA--KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNE 210 (521)
Q Consensus 149 ~----------~~------g~~~~~i~~~f~~a--~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~ 210 (521)
. .. +.....+..+|... ....++||+|||+|.+. .+..+..++.... ....
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~---------~q~~L~~l~~~~~--~~~s 162 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL---------SEKILQYFEKWIS--SKNS 162 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC---------CTHHHHHHHHHHH--CSSC
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh---------cchHHHHHHhccc--ccCC
Confidence 2 11 22345677788764 34567899999999995 2356777776543 2456
Q ss_pred ceEEEeecCCCCC----CCccccCCCccc-eEEecCCCCHHHHHHHHHHHhcc
Q 009974 211 GIILMAATNLPDI----LDPALTRPGRFD-RHIVVPNPDVRGRQEILELYLQD 258 (521)
Q Consensus 211 ~vivI~ttn~~~~----ld~al~r~gRf~-~~i~~~~P~~~~r~~il~~~l~~ 258 (521)
++++|+++|..+. +++++++ ||. ..|.|++++.++..+|++..+..
T Consensus 163 ~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 163 KLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred cEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 7899999998764 3455555 886 68999999999999999998865
No 63
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.73 E-value=5.6e-17 Score=162.88 Aligned_cols=204 Identities=16% Similarity=0.170 Sum_probs=147.3
Q ss_pred CCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeC
Q 009974 69 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAG 143 (521)
Q Consensus 69 ~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~-----~~~~~~i~~ 143 (521)
+...+.+|++++|++++++.|.+.+.. ...|. ++|+||||+|||++|+++++.+ +.+++.+++
T Consensus 13 ~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 80 (323)
T 1sxj_B 13 EKYRPQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA 80 (323)
T ss_dssp HHTCCSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred HhcCCCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC
Confidence 344556899999999999988887651 23454 9999999999999999999986 356888887
Q ss_pred chhhhhhhhhhhHHHHHHHHHHH-------hcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEe
Q 009974 144 SEFEEMFVGVGARRVRSLFQAAK-------KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMA 216 (521)
Q Consensus 144 ~~~~~~~~g~~~~~i~~~f~~a~-------~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ 216 (521)
++... ...++..+.... .+.+.||+|||+|.+.. ...+.|+..++. ...++++|.
T Consensus 81 ~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~----------~~~~~L~~~le~--~~~~~~~il 142 (323)
T 1sxj_B 81 SDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA----------GAQQALRRTMEL--YSNSTRFAF 142 (323)
T ss_dssp TSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH----------HHHHTTHHHHHH--TTTTEEEEE
T ss_pred ccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH----------HHHHHHHHHHhc--cCCCceEEE
Confidence 65322 233444444443 23478999999999832 345556666664 235577788
Q ss_pred ecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 009974 217 ATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAV 295 (521)
Q Consensus 217 ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~ 295 (521)
+||.+..+++.+.+ |+. .+.+++|+.++..++++.++...+.. ++..+..++..+.| +++.+.++++.+...
T Consensus 143 ~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~~~--- 215 (323)
T 1sxj_B 143 ACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTVAG--- 215 (323)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHH---
T ss_pred EeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc---
Confidence 88999999999988 775 89999999999999999988654433 33446777877755 677777777655422
Q ss_pred hCCCccCHHHHHHHHH
Q 009974 296 DGGEKLTATELEFAKD 311 (521)
Q Consensus 296 ~~~~~it~~~~~~a~~ 311 (521)
.+.|+.+++..++.
T Consensus 216 --~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 216 --HGLVNADNVFKIVD 229 (323)
T ss_dssp --HSSBCHHHHHHHHT
T ss_pred --CCCcCHHHHHHHHC
Confidence 25789988877653
No 64
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.73 E-value=1.6e-16 Score=163.73 Aligned_cols=220 Identities=15% Similarity=0.137 Sum_probs=159.2
Q ss_pred CcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCc--eEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCchhhh
Q 009974 75 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPK--GILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEE 148 (521)
Q Consensus 75 ~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~--~vLL~GppGtGKT~la~alA~~~----~~~~~~i~~~~~~~ 148 (521)
.+++++|.++..+.+...+..... ...+. +++|+||||||||++++++++.+ +.++++++|.....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLR--------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHH--------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 347899999998888887765321 12233 89999999999999999999988 67889999765432
Q ss_pred h---h---h----------hhhh-HHHHHHHHHHH-hcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCcc--
Q 009974 149 M---F---V----------GVGA-RRVRSLFQAAK-KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ-- 208 (521)
Q Consensus 149 ~---~---~----------g~~~-~~i~~~f~~a~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~-- 208 (521)
. + . +... .....+..... ...|.||+|||+|.+ ....++.|+..++....
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l----------~~~~~~~L~~~~~~~~~~~ 156 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL----------APDILSTFIRLGQEADKLG 156 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS----------CHHHHHHHHHHTTCHHHHS
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc----------chHHHHHHHHHHHhCCCCC
Confidence 1 0 0 1111 11222222222 245889999999998 24566677777654332
Q ss_pred CCceEEEeecCCC---CCCCccccCCCccce-EEecCCCCHHHHHHHHHHHhcc---CCCCCcccHHHHHhcCC------
Q 009974 209 NEGIILMAATNLP---DILDPALTRPGRFDR-HIVVPNPDVRGRQEILELYLQD---KPLADDVDVKAIARGTP------ 275 (521)
Q Consensus 209 ~~~vivI~ttn~~---~~ld~al~r~gRf~~-~i~~~~P~~~~r~~il~~~l~~---~~~~~~~~l~~la~~~~------ 275 (521)
..++.+|++||.+ ..+++.+.+ ||.. .+.+++++.++..++++..+.. ....++..+..++..+.
T Consensus 157 ~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 234 (389)
T 1fnn_A 157 AFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLD 234 (389)
T ss_dssp SCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTC
T ss_pred cCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCC
Confidence 2578888999987 567888777 8875 8999999999999999988764 12223445677777773
Q ss_pred --CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 009974 276 --GFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRIL 314 (521)
Q Consensus 276 --g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~~ 314 (521)
+.+++.+.++++.|...|..++...|+.+++..++....
T Consensus 235 ~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 235 TNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 237899999999999888888889999999999988764
No 65
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.72 E-value=9.8e-17 Score=161.43 Aligned_cols=209 Identities=20% Similarity=0.244 Sum_probs=145.7
Q ss_pred ccCCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC-----CCEEEE
Q 009974 67 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG-----VPFFYR 141 (521)
Q Consensus 67 ~~~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~-----~~~~~i 141 (521)
+.....+.+|++++|++++++.+...+.. ...| ++||+||||||||++|+++++.+. .+++.+
T Consensus 15 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~ 82 (327)
T 1iqp_A 15 WVEKYRPQRLDDIVGQEHIVKRLKHYVKT-----------GSMP-HLLFAGPPGVGKTTAALALARELFGENWRHNFLEL 82 (327)
T ss_dssp HHHHTCCCSTTTCCSCHHHHHHHHHHHHH-----------TCCC-EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEE
T ss_pred hhhccCCCCHHHhhCCHHHHHHHHHHHHc-----------CCCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEe
Confidence 33455667899999999999998887752 2233 599999999999999999999863 347788
Q ss_pred eCchhhhhhhhhhhHHHHHHHHHH--HhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecC
Q 009974 142 AGSEFEEMFVGVGARRVRSLFQAA--KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 219 (521)
Q Consensus 142 ~~~~~~~~~~g~~~~~i~~~f~~a--~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn 219 (521)
++++.... ......+....... ....+.+|+|||+|.+. ....+.|+..++. ...++.+|.+||
T Consensus 83 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~----------~~~~~~L~~~le~--~~~~~~~i~~~~ 148 (327)
T 1iqp_A 83 NASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALT----------QDAQQALRRTMEM--FSSNVRFILSCN 148 (327)
T ss_dssp ETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC----------HHHHHHHHHHHHH--TTTTEEEEEEES
T ss_pred eccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC----------HHHHHHHHHHHHh--cCCCCeEEEEeC
Confidence 87654321 11111122211100 11447899999999983 2445667766764 245677888899
Q ss_pred CCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 009974 220 LPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGG 298 (521)
Q Consensus 220 ~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~ 298 (521)
.+..+++.+.+ |+. .+.+++|+.++...+++.++...+.. ++..+..++..+.| +++.+.++++.+.. ..
T Consensus 149 ~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~-----~~ 219 (327)
T 1iqp_A 149 YSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAA-----LD 219 (327)
T ss_dssp CGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHT-----TC
T ss_pred CccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHh-----cC
Confidence 99999999887 885 88999999999999999988765543 33346777777655 67777777765442 23
Q ss_pred CccCHHHHHHHH
Q 009974 299 EKLTATELEFAK 310 (521)
Q Consensus 299 ~~it~~~~~~a~ 310 (521)
..||.+++..+.
T Consensus 220 ~~i~~~~v~~~~ 231 (327)
T 1iqp_A 220 KKITDENVFMVA 231 (327)
T ss_dssp SEECHHHHHHHT
T ss_pred CCCCHHHHHHHH
Confidence 478888876553
No 66
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.71 E-value=1.4e-16 Score=163.51 Aligned_cols=204 Identities=20% Similarity=0.304 Sum_probs=149.3
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 137 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~------------ 137 (521)
...+.+|++++|++++++.|...+.. .+.|+.++|+||||||||++|+++++.+++.
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 77 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 34456899999999999988887752 2345679999999999999999999987542
Q ss_pred ------------EEEEeCchhhhhhhhhhhHHHHHHHHHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHH
Q 009974 138 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 201 (521)
Q Consensus 138 ------------~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~ 201 (521)
++.++... ......++.++..+.. +.+.||+|||+|.+. ....+.|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~----------~~~~~~Ll~ 141 (373)
T 1jr3_A 78 NCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS----------RHSFNALLK 141 (373)
T ss_dssp HHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC----------HHHHHHHHH
T ss_pred HHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc----------HHHHHHHHH
Confidence 22222211 0112335566665542 346799999999982 345677777
Q ss_pred hhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHH
Q 009974 202 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGA 280 (521)
Q Consensus 202 ~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~ 280 (521)
.++. ...++++|.+|+.+..+.+.+.+ |+ ..+.+++|+.++...+++.++...+.. ++..+..++..+.| +++
T Consensus 142 ~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r 215 (373)
T 1jr3_A 142 TLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLR 215 (373)
T ss_dssp HHHS--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHH
T ss_pred HHhc--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHH
Confidence 7774 34567888888888889988887 77 689999999999999999988765443 23346778888866 889
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009974 281 DLANLVNIAAIKAAVDGGEKLTATELEFAK 310 (521)
Q Consensus 281 dl~~lv~~A~~~a~~~~~~~it~~~~~~a~ 310 (521)
++.++++.+... +...||.+++..++
T Consensus 216 ~~~~~l~~~~~~----~~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 216 DALSLTDQAIAS----GDGQVSTQAVSAML 241 (373)
T ss_dssp HHHHHHHHHHHH----TTTCBCHHHHHHHT
T ss_pred HHHHHHHHHHHh----cCCcccHHHHHHHh
Confidence 999988876543 34679999887654
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.71 E-value=6.4e-17 Score=181.72 Aligned_cols=190 Identities=22% Similarity=0.311 Sum_probs=135.7
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEE
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYR 141 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~----------~~~~~~i 141 (521)
...+|++++|.++.++++.+++.. ..+.++||+||||||||++|+++|+.+ +.+++.+
T Consensus 175 ~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 175 KEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 445799999999988887776641 234589999999999999999999986 7888888
Q ss_pred eCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCC
Q 009974 142 AGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 221 (521)
Q Consensus 142 ~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~ 221 (521)
++ ...|.|....+++.+|..+....|+||||| + .....+.|+..++ +..+.+|++||..
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~---------~~~~~~~L~~~l~----~~~v~~I~at~~~ 301 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A---------AIDASNILKPSLA----RGELQCIGATTLD 301 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C-----------------CCCTT----SSSCEEEEECCTT
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C---------chhHHHHHHHHHh----cCCEEEEeCCChH
Confidence 87 556788888899999999999889999999 1 1123334444444 5678999999998
Q ss_pred C-----CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCC----CC-CcccHHHHHhc-----CCCCCHHHHHHHH
Q 009974 222 D-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP----LA-DDVDVKAIARG-----TPGFNGADLANLV 286 (521)
Q Consensus 222 ~-----~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~----~~-~~~~l~~la~~-----~~g~s~~dl~~lv 286 (521)
+ .+|+++.| || ..+.|+.|+.+++.+|++.++.... .. .+..+..++.. ..++.+.....++
T Consensus 302 ~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll 378 (758)
T 3pxi_A 302 EYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLI 378 (758)
T ss_dssp TTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHH
T ss_pred HHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHH
Confidence 8 79999999 99 5699999999999999998776532 11 22234444432 3466788888888
Q ss_pred HHHHHHHHHhC
Q 009974 287 NIAAIKAAVDG 297 (521)
Q Consensus 287 ~~A~~~a~~~~ 297 (521)
..|...+....
T Consensus 379 ~~a~~~~~~~~ 389 (758)
T 3pxi_A 379 DEAGSKVRLRS 389 (758)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhhc
Confidence 88877665554
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.70 E-value=9.9e-17 Score=180.20 Aligned_cols=197 Identities=20% Similarity=0.244 Sum_probs=138.6
Q ss_pred cccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhhh
Q 009974 76 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVG 152 (521)
Q Consensus 76 f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~g 152 (521)
.++++|++++++.+.+.+...+..... ..++..++||+||||||||++|+++|+.+ +.+|+.++|+++.+.+..
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~~---~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLKD---PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCSC---TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccCC---CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 357999999999999988764422110 11222369999999999999999999987 789999999998876544
Q ss_pred hhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc---------cCCceEEEeecCCCCC
Q 009974 153 VGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGIILMAATNLPDI 223 (521)
Q Consensus 153 ~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~---------~~~~vivI~ttn~~~~ 223 (521)
. ...++...+...++||||||||.+ ...+++.|+..++... ...++++|+|||.+..
T Consensus 567 ~----~~~l~~~~~~~~~~vl~lDEi~~~----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~ 632 (758)
T 3pxi_A 567 S----GGQLTEKVRRKPYSVVLLDAIEKA----------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGAS 632 (758)
T ss_dssp C-------CHHHHHHCSSSEEEEECGGGS----------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTT
T ss_pred c----cchhhHHHHhCCCeEEEEeCcccc----------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChh
Confidence 3 122333444556789999999988 3456677777776421 2346799999997654
Q ss_pred ------------CCccccCCCccceEEecCCCCHHHHHHHHHHHhccC-------CCC---CcccHHHHHh--cCCCCCH
Q 009974 224 ------------LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK-------PLA---DDVDVKAIAR--GTPGFNG 279 (521)
Q Consensus 224 ------------ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~-------~~~---~~~~l~~la~--~~~g~s~ 279 (521)
++|++++ ||+..+.|++|+.+++..|++.++... ... ++..+..++. ....++.
T Consensus 633 ~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 710 (758)
T 3pxi_A 633 EKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGA 710 (758)
T ss_dssp CCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTT
T ss_pred hHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCC
Confidence 6788887 999999999999999999999887542 111 2233556655 3445667
Q ss_pred HHHHHHHHHHHH
Q 009974 280 ADLANLVNIAAI 291 (521)
Q Consensus 280 ~dl~~lv~~A~~ 291 (521)
++|+++++++..
T Consensus 711 R~L~~~i~~~v~ 722 (758)
T 3pxi_A 711 RPLRRAIQKHVE 722 (758)
T ss_dssp TTHHHHHHHHTH
T ss_pred hHHHHHHHHHHH
Confidence 788888776543
No 69
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.69 E-value=1.5e-16 Score=180.80 Aligned_cols=204 Identities=23% Similarity=0.296 Sum_probs=135.6
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEE
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYR 141 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~----------~~~~~~i 141 (521)
.+.+|++++|.++..+++.+++. . ..+++++|+||||||||++|+++|+.+ +.+++.+
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~---~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILL---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHH---C---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred hcCCCcccCCcHHHHHHHHHHHh---c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 35689999999987766666553 1 234579999999999999999999987 8899999
Q ss_pred eCchhh--hhhhhhhhHHHHHHHHHHHhc-CCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeec
Q 009974 142 AGSEFE--EMFVGVGARRVRSLFQAAKKK-APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT 218 (521)
Q Consensus 142 ~~~~~~--~~~~g~~~~~i~~~f~~a~~~-~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~tt 218 (521)
+++.+. ..+.|.....++.+|..+... .|+||||||+|.+.+...... .....+.+...++ +..+.+|++|
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g--~~~~~~~L~~~l~----~~~i~~I~at 306 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG--AVDAGNMLKPALA----RGELRLIGAT 306 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC---------------------HHHHH----TTCCCEEEEE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc--hHHHHHHHHHHHh----CCCeEEEEec
Confidence 998886 457788888999999998875 689999999999965433211 1223333333343 4567889999
Q ss_pred CCCC----CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccC----CCC-CcccHHHHHhc-----CCCCCHHHHHH
Q 009974 219 NLPD----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK----PLA-DDVDVKAIARG-----TPGFNGADLAN 284 (521)
Q Consensus 219 n~~~----~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~----~~~-~~~~l~~la~~-----~~g~s~~dl~~ 284 (521)
|.++ .+++++.| ||+. +.++.|+.+++.+|++.++... ... .+..+..++.. ...+.+.....
T Consensus 307 ~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~ 383 (854)
T 1qvr_A 307 TLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAID 383 (854)
T ss_dssp CHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHH
T ss_pred CchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHH
Confidence 8774 47999999 9985 9999999999999998776532 111 22334444442 34567888888
Q ss_pred HHHHHHHHHHHh
Q 009974 285 LVNIAAIKAAVD 296 (521)
Q Consensus 285 lv~~A~~~a~~~ 296 (521)
++.+|...+..+
T Consensus 384 lldea~a~~~~~ 395 (854)
T 1qvr_A 384 LIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 888887766554
No 70
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.69 E-value=2.5e-17 Score=151.45 Aligned_cols=152 Identities=23% Similarity=0.339 Sum_probs=109.0
Q ss_pred cCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCCEEEEe
Q 009974 73 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYRA 142 (521)
Q Consensus 73 ~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~----------~~~~~~i~ 142 (521)
+.+|++++|.++..+.+.+.+. . ..+.+++|+||||||||++|+++++.+ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILS---R---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchHHHHHHHHHHh---C---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 4589999999987666665442 1 234589999999999999999999987 78888888
Q ss_pred Cchhhhh--hhhhhhHHHHHHHHHHHhc-CCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecC
Q 009974 143 GSEFEEM--FVGVGARRVRSLFQAAKKK-APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 219 (521)
Q Consensus 143 ~~~~~~~--~~g~~~~~i~~~f~~a~~~-~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn 219 (521)
+..+... +.+.....+..++..+... .|++|||||+|.+...+.... ......+.+...++ ..++++|++||
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-~~~~~~~~l~~~~~----~~~~~ii~~~~ 160 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAE-GALDAGNILKPMLA----RGELRCIGATT 160 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCT-TSCCTHHHHHHHHH----TTCSCEEEEEC
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccc-cchHHHHHHHHHHh----cCCeeEEEecC
Confidence 8776532 4455556677777776654 678999999999975433111 01122233333333 35678899998
Q ss_pred CCC-----CCCccccCCCccceEEecCCCC
Q 009974 220 LPD-----ILDPALTRPGRFDRHIVVPNPD 244 (521)
Q Consensus 220 ~~~-----~ld~al~r~gRf~~~i~~~~P~ 244 (521)
.+. .+++++.+ ||+ .+.++.|+
T Consensus 161 ~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 161 VSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp HHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred HHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 775 68999999 998 49999886
No 71
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.69 E-value=1.1e-16 Score=157.00 Aligned_cols=205 Identities=20% Similarity=0.208 Sum_probs=125.5
Q ss_pred CCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEEeCchhhhhh
Q 009974 74 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAGSEFEEMF 150 (521)
Q Consensus 74 ~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~---~~~~~i~~~~~~~~~ 150 (521)
.+|++++|.++..+.+.+.+..+.. .+.++||+||||||||++|+++++.+. .||++++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 4799999999998888887765432 234799999999999999999999874 789999998874321
Q ss_pred h-----hhhhHH-------HHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcC---------ccC
Q 009974 151 V-----GVGARR-------VRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF---------EQN 209 (521)
Q Consensus 151 ~-----g~~~~~-------i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~---------~~~ 209 (521)
. |..... ....|..+ .+++|||||+|.+.. .....|+..++.. ...
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~----------~~q~~Ll~~l~~~~~~~~g~~~~~~ 139 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM----------MVQEKLLRVIEYGELERVGGSQPLQ 139 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCH----------HHHHHHHHHHHHCEECCCCC--CEE
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCH----------HHHHHHHHHHHhCCeecCCCccccc
Confidence 1 110000 01123222 346999999999832 3445555555531 113
Q ss_pred CceEEEeecCCC-------CCCCccccCCCccce-EEecCCCCH--HHHHHHHHHHhcc----CCC-----CCcccHHHH
Q 009974 210 EGIILMAATNLP-------DILDPALTRPGRFDR-HIVVPNPDV--RGRQEILELYLQD----KPL-----ADDVDVKAI 270 (521)
Q Consensus 210 ~~vivI~ttn~~-------~~ld~al~r~gRf~~-~i~~~~P~~--~~r~~il~~~l~~----~~~-----~~~~~l~~l 270 (521)
.++.+|+|||.+ ..+++.+.+ ||.. .+.+|+.+. ++...++++++.. .+. -++..+..+
T Consensus 140 ~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L 217 (265)
T 2bjv_A 140 VNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETL 217 (265)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHH
T ss_pred CCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHH
Confidence 457899999975 246777777 8853 455554433 3445565555432 222 123335566
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 009974 271 ARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATEL 306 (521)
Q Consensus 271 a~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~ 306 (521)
.......+.+++.++++.+...+ .+..|+.+|+
T Consensus 218 ~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 218 LNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 66654457889999998877654 4567777665
No 72
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.68 E-value=7.5e-17 Score=171.25 Aligned_cols=210 Identities=18% Similarity=0.152 Sum_probs=134.4
Q ss_pred ccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEEeCch-hhhhhhhh
Q 009974 77 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSE-FEEMFVGV 153 (521)
Q Consensus 77 ~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~--~~~~~i~~~~-~~~~~~g~ 153 (521)
..++|.+++++.+...+.. ..++||+||||||||++|+++|+.++ .+|..+++.- ..+...|.
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 3478999988776655431 13799999999999999999999884 4666666532 11122221
Q ss_pred -h-hH-HHHHHHHHHHhc---CCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc--------cCCceEEEeecC
Q 009974 154 -G-AR-RVRSLFQAAKKK---APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--------QNEGIILMAATN 219 (521)
Q Consensus 154 -~-~~-~i~~~f~~a~~~---~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~--------~~~~vivI~ttn 219 (521)
. .. .-...|..+..+ .++|||||||+.+ ...+.+.|+..|+... ..+..++|+|||
T Consensus 88 ~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~----------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN 157 (500)
T 3nbx_X 88 LSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKA----------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASN 157 (500)
T ss_dssp BC----------CBCCTTSGGGCSEEEEESGGGC----------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEES
T ss_pred ccHHHHhhchhHHhhhccCCCcceeeeHHhHhhh----------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccc
Confidence 0 00 011223222222 4679999999876 3456667777775311 111224577777
Q ss_pred CCCC---CCccccCCCccceEEecCCCCH-HHHHHHHHHHhccC-------------------------CCCCcccHHHH
Q 009974 220 LPDI---LDPALTRPGRFDRHIVVPNPDV-RGRQEILELYLQDK-------------------------PLADDVDVKAI 270 (521)
Q Consensus 220 ~~~~---ld~al~r~gRf~~~i~~~~P~~-~~r~~il~~~l~~~-------------------------~~~~~~~l~~l 270 (521)
.+.. ..+++++ ||...+.+++|+. +++..|++.+.... .+. +.-.+.+
T Consensus 158 ~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~-d~v~e~i 234 (500)
T 3nbx_X 158 ELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLP-DHVFELI 234 (500)
T ss_dssp SCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCC-HHHHHHH
T ss_pred cCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCc-hHHHHHH
Confidence 5322 3358888 9999999999987 77888888765311 111 1112333
Q ss_pred Hhc---------CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 009974 271 ARG---------TPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRIL 314 (521)
Q Consensus 271 a~~---------~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~~ 314 (521)
+.. ..|.|++.+..+++.|...|..++++.|+.+|+. +...++
T Consensus 235 ~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL 286 (500)
T 3nbx_X 235 FMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCL 286 (500)
T ss_dssp HHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTS
T ss_pred HHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhh
Confidence 322 3588999999999999999999999999999998 544443
No 73
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.66 E-value=3.9e-16 Score=175.44 Aligned_cols=198 Identities=20% Similarity=0.263 Sum_probs=136.9
Q ss_pred ccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhh-------
Q 009974 77 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM------- 149 (521)
Q Consensus 77 ~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~------- 149 (521)
++++|++++++.+...+........ ...++..++||+||||||||++|+++|+.++.+++.++++++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~---~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~ 534 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLG---HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCS---CTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSC
T ss_pred hhccCHHHHHHHHHHHHHHHhcccC---CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhc
Confidence 4689999999998887765331100 011233479999999999999999999999999999999987543
Q ss_pred -----hhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCcc---------CCceEEE
Q 009974 150 -----FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ---------NEGIILM 215 (521)
Q Consensus 150 -----~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~---------~~~vivI 215 (521)
|+|.... ..+....+...++||||||+|.+ ...+++.|++.|+...- -.+++||
T Consensus 535 g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~----------~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI 602 (758)
T 1r6b_X 535 GAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA----------HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLV 602 (758)
T ss_dssp CCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS----------CHHHHHHHHHHHHHSEEEETTTEEEECTTEEEE
T ss_pred CCCCCCcCcccc--chHHHHHHhCCCcEEEEeCcccc----------CHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEE
Confidence 4443221 12333444455789999999987 34577777777774211 1458899
Q ss_pred eecCCCC-------------------------CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccC-------CC--
Q 009974 216 AATNLPD-------------------------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK-------PL-- 261 (521)
Q Consensus 216 ~ttn~~~-------------------------~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~-------~~-- 261 (521)
+|||.+. .+++++++ ||+..+.|++|+.+++..|++.++... ..
T Consensus 603 ~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~ 680 (758)
T 1r6b_X 603 MTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSL 680 (758)
T ss_dssp EEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred EecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEE
Confidence 9999854 56788887 999999999999999999999988632 10
Q ss_pred -CCcccHHHHHhcC--CCCCHHHHHHHHHHHHH
Q 009974 262 -ADDVDVKAIARGT--PGFNGADLANLVNIAAI 291 (521)
Q Consensus 262 -~~~~~l~~la~~~--~g~s~~dl~~lv~~A~~ 291 (521)
-++..+..++... ..++.+++.++++.+..
T Consensus 681 ~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 681 EVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp EECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred EeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 0222244455432 23446677776665543
No 74
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.66 E-value=3e-16 Score=157.11 Aligned_cols=202 Identities=21% Similarity=0.283 Sum_probs=130.3
Q ss_pred ccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhh--
Q 009974 77 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV-- 151 (521)
Q Consensus 77 ~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~-- 151 (521)
++++|.++..+.+.+.+..... .+.++||+||||||||++|+++++.. +.||+.++|+.+.....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----------SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----------TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----------CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 3689999998888888876432 24479999999999999999999965 68999999987654321
Q ss_pred ---hhh----h---HHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc---------cCCce
Q 009974 152 ---GVG----A---RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGI 212 (521)
Q Consensus 152 ---g~~----~---~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~---------~~~~v 212 (521)
|.. . ......|..+. +++|||||||.+.. .....|+..++... ...++
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~----------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ 138 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISP----------LMQVRLLRAIQEREVQRVGSNQTISVDV 138 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCH----------HHHHHHHHHHHSSBCCBTTBCCCCBCCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCH----------HHHHHHHHHHhcCEeeecCCcccccCCe
Confidence 110 0 01223455544 35999999999832 34455666665321 13458
Q ss_pred EEEeecCCC-------CCCCccccCCCccceEEecCCCCHH----HHHHHHHHHhcc----CC----CCCcccHHHHHhc
Q 009974 213 ILMAATNLP-------DILDPALTRPGRFDRHIVVPNPDVR----GRQEILELYLQD----KP----LADDVDVKAIARG 273 (521)
Q Consensus 213 ivI~ttn~~-------~~ld~al~r~gRf~~~i~~~~P~~~----~r~~il~~~l~~----~~----~~~~~~l~~la~~ 273 (521)
.||+|||.+ ..+++.+.. ||. .+.+..|+.+ +...++++++.. .+ .-++..+..+...
T Consensus 139 riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~ 215 (304)
T 1ojl_A 139 RLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHY 215 (304)
T ss_dssp EEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC
T ss_pred EEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcC
Confidence 899999976 234555555 664 4444444444 445567666543 11 1123346667777
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 009974 274 TPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 307 (521)
Q Consensus 274 ~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~ 307 (521)
....+.+++.++++.+...+ ....|+.+|+.
T Consensus 216 ~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l~ 246 (304)
T 1ojl_A 216 DWPGNIRELENAIERAVVLL---TGEYISERELP 246 (304)
T ss_dssp CCSSHHHHHHHHHHHHHHHC---CSSSBCGGGSC
T ss_pred CCCCCHHHHHHHHHHHHHhC---CCCcccHHhhh
Confidence 64457889999998877644 45678877763
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=6.7e-16 Score=157.05 Aligned_cols=211 Identities=19% Similarity=0.210 Sum_probs=141.1
Q ss_pred cccCCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-----CEEE
Q 009974 66 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-----PFFY 140 (521)
Q Consensus 66 ~~~~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~-----~~~~ 140 (521)
++.....+.+|++++|++.+++.|...+. ..+.|. ++|+||||||||++++++|+.+.. .+..
T Consensus 14 ~~~~k~rp~~~~~~~g~~~~~~~L~~~i~-----------~g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 81 (340)
T 1sxj_C 14 PWVEKYRPETLDEVYGQNEVITTVRKFVD-----------EGKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE 81 (340)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHH-----------TTCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred chHHHhCCCcHHHhcCcHHHHHHHHHHHh-----------cCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence 34445566799999999999988887775 234454 999999999999999999998643 3666
Q ss_pred EeCchhhhhhhhhhhHHHHHHHHHHHh------cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEE
Q 009974 141 RAGSEFEEMFVGVGARRVRSLFQAAKK------KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIL 214 (521)
Q Consensus 141 i~~~~~~~~~~g~~~~~i~~~f~~a~~------~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~viv 214 (521)
+++++... ...++..+..... ..+.|++|||+|.+. ....+.|+..++.. .....+
T Consensus 82 ~~~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~----------~~~~~~L~~~le~~--~~~~~~ 143 (340)
T 1sxj_C 82 LNASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT----------NAAQNALRRVIERY--TKNTRF 143 (340)
T ss_dssp ECTTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC----------HHHHHHHHHHHHHT--TTTEEE
T ss_pred EcCccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC----------HHHHHHHHHHHhcC--CCCeEE
Confidence 77655321 1223333332221 236799999999983 23456677777743 345567
Q ss_pred EeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 009974 215 MAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKA 293 (521)
Q Consensus 215 I~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a 293 (521)
|.+||.+..+.+++++ |+. .+.+++++.++..+++...+....+. ++.....++..+.| +.+.+.++++.+...+
T Consensus 144 il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l~~~~~~~ 219 (340)
T 1sxj_C 144 CVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVLQSCKATL 219 (340)
T ss_dssp EEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHTTTTTTTT
T ss_pred EEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc
Confidence 7788999999999998 885 78999999999999999888544332 23345666665543 4555555554333222
Q ss_pred HHhCCCccCHHHHHHHH
Q 009974 294 AVDGGEKLTATELEFAK 310 (521)
Q Consensus 294 ~~~~~~~it~~~~~~a~ 310 (521)
...+...||.+++..++
T Consensus 220 ~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 220 DNPDEDEISDDVIYECC 236 (340)
T ss_dssp CSSSCCCBCHHHHHHHT
T ss_pred CCcccccccHHHHHHHh
Confidence 11122368888876653
No 76
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=8.3e-16 Score=156.84 Aligned_cols=193 Identities=17% Similarity=0.202 Sum_probs=131.6
Q ss_pred cCCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-----------
Q 009974 68 MPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV----------- 136 (521)
Q Consensus 68 ~~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~----------- 136 (521)
.....+.+|++++|++++++.++..+. . ..+.|. ++|+||||||||++++++++++..
T Consensus 5 ~~kyrP~~~~~~vg~~~~~~~l~~~~~--~--------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 5 VDKYRPKSLNALSHNEELTNFLKSLSD--Q--------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp TTTTCCCSGGGCCSCHHHHHHHHTTTT--C--------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred hhccCCCCHHHhcCCHHHHHHHHHHHh--h--------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 344556789999999998877766541 1 234455 999999999999999999996421
Q ss_pred ------------------CEEEEeCchhhhhhhhhhhHHHHHHHHHHH--------------hcCCcEEEEccccccccC
Q 009974 137 ------------------PFFYRAGSEFEEMFVGVGARRVRSLFQAAK--------------KKAPCIIFIDEIDAVGST 184 (521)
Q Consensus 137 ------------------~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~--------------~~~p~Il~IDEiD~l~~~ 184 (521)
+++.++.++.... ....++..+..+. ...|.|++|||++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L--- 146 (354)
T 1sxj_E 74 QFVTASNRKLELNVVSSPYHLEITPSDMGNN----DRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL--- 146 (354)
T ss_dssp ------------CCEECSSEEEECCC----C----CHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS---
T ss_pred eecccccccceeeeecccceEEecHhhcCCc----chHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc---
Confidence 1233333221100 0012344444332 235779999999987
Q ss_pred CcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-C
Q 009974 185 RKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-D 263 (521)
Q Consensus 185 ~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~ 263 (521)
.....+.++..++.. ..+..+|.+||.++.+.+.+++ |+ ..+.|++|+.++...+++..+...+.. +
T Consensus 147 -------~~~~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (354)
T 1sxj_E 147 -------TKDAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLE 214 (354)
T ss_dssp -------CHHHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEEC
T ss_pred -------CHHHHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCC
Confidence 234556677767653 3357788888999999999988 88 789999999999999999988765443 2
Q ss_pred -cccHHHHHhcCCCCCHHHHHHHHHHHHH
Q 009974 264 -DVDVKAIARGTPGFNGADLANLVNIAAI 291 (521)
Q Consensus 264 -~~~l~~la~~~~g~s~~dl~~lv~~A~~ 291 (521)
+..+..++..+.| +.+++.++++.+..
T Consensus 215 ~~~~l~~i~~~~~G-~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 215 TKDILKRIAQASNG-NLRVSLLMLESMAL 242 (354)
T ss_dssp CSHHHHHHHHHHTT-CHHHHHHHHTHHHH
T ss_pred cHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 4457778877755 77777777775544
No 77
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.63 E-value=1.6e-16 Score=173.00 Aligned_cols=219 Identities=20% Similarity=0.153 Sum_probs=139.3
Q ss_pred ccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE----eCchhhhh---
Q 009974 77 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR----AGSEFEEM--- 149 (521)
Q Consensus 77 ~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i----~~~~~~~~--- 149 (521)
..|+|++++|+.+...+..- .+........+...++||+||||||||++|+++|+.++.+++.. ++..+...
T Consensus 295 ~~I~G~e~vk~al~~~l~~g-~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG-VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC-CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhCC-CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 45789988876653222100 00000011122234799999999999999999999987665542 22222111
Q ss_pred --hhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc-----------cCCceEEEe
Q 009974 150 --FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-----------QNEGIILMA 216 (521)
Q Consensus 150 --~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~-----------~~~~vivI~ 216 (521)
+.|... .....+..|. .+|+||||||.+.. ...+.|+..|+.-. .+.++.||+
T Consensus 374 ~~~~g~~~-~~~G~l~~A~---~gil~IDEid~l~~----------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIa 439 (595)
T 3f9v_A 374 EKGTGEYY-LEAGALVLAD---GGIAVIDEIDKMRD----------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIA 439 (595)
T ss_dssp GGGTSSCS-EEECHHHHHS---SSEECCTTTTCCCS----------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEE
T ss_pred cccccccc-ccCCeeEecC---CCcEEeehhhhCCH----------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEE
Confidence 111100 0011233332 35999999999832 34455666665321 134688999
Q ss_pred ecCCCC-------------CCCccccCCCccce-EEecCCCCHHHHHHHHHHHhccCCC---------------------
Q 009974 217 ATNLPD-------------ILDPALTRPGRFDR-HIVVPNPDVRGRQEILELYLQDKPL--------------------- 261 (521)
Q Consensus 217 ttn~~~-------------~ld~al~r~gRf~~-~i~~~~P~~~~r~~il~~~l~~~~~--------------------- 261 (521)
|||.+. .+++++++ |||. .+..+.|+.+ ...|.++.+.....
T Consensus 440 atNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~ 516 (595)
T 3f9v_A 440 AGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARK 516 (595)
T ss_dssp EECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHH
T ss_pred EcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHH
Confidence 999886 89999999 9985 5566777777 88888877754220
Q ss_pred -----CCcccHHHHHhc--------------CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 009974 262 -----ADDVDVKAIARG--------------TPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 313 (521)
Q Consensus 262 -----~~~~~l~~la~~--------------~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~ 313 (521)
-++...+.+... ..+.|++.+.++++.|...|..++++.|+.+|+.+|+.-+
T Consensus 517 ~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 517 YVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp HHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 111122233322 3578999999999999999999999999999999998744
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.59 E-value=3.5e-15 Score=169.58 Aligned_cols=202 Identities=20% Similarity=0.263 Sum_probs=137.6
Q ss_pred cccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhh--
Q 009974 76 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF-- 150 (521)
Q Consensus 76 f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~-- 150 (521)
+++|+|++++++.+...+...+.... ...++..++||+||||||||++|+++++.+ +.+|+.++|+.+....
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~---~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCS---CSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccC---CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 46789999999999988876432100 011233489999999999999999999988 7899999998775431
Q ss_pred ---hhhh-----hHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc---------cCCceE
Q 009974 151 ---VGVG-----ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGII 213 (521)
Q Consensus 151 ---~g~~-----~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~---------~~~~vi 213 (521)
.|.. ......+....+...++||||||+|.+ ...+++.|+..++... .-.+++
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l----------~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~i 703 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA----------HPDVFNILLQILDDGRLTDSHGRTVDFRNTV 703 (854)
T ss_dssp GGC--------------CHHHHHHHCSSEEEEESSGGGS----------CHHHHHHHHHHHTTTEECCSSSCCEECTTEE
T ss_pred HHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccccc----------CHHHHHHHHHHhccCceECCCCCEeccCCeE
Confidence 1110 111123333444455689999999987 3467778888877431 113578
Q ss_pred EEeecCCC--------------------------CCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccC-------C
Q 009974 214 LMAATNLP--------------------------DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK-------P 260 (521)
Q Consensus 214 vI~ttn~~--------------------------~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~-------~ 260 (521)
||+|||.+ ..+.+.|+. ||+..+.+.+|+.+++..|+++++... .
T Consensus 704 iI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~ 781 (854)
T 1qvr_A 704 IILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKR 781 (854)
T ss_dssp EEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999972 235666776 999999999999999999999887631 1
Q ss_pred C---CCcccHHHHHhcCC--CCCHHHHHHHHHHHHHH
Q 009974 261 L---ADDVDVKAIARGTP--GFNGADLANLVNIAAIK 292 (521)
Q Consensus 261 ~---~~~~~l~~la~~~~--g~s~~dl~~lv~~A~~~ 292 (521)
. -++..+..++.... .++.++|+++++++...
T Consensus 782 ~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~ 818 (854)
T 1qvr_A 782 ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELET 818 (854)
T ss_dssp CEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHH
T ss_pred ceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHH
Confidence 1 12233556666544 46778888888766544
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.55 E-value=1.7e-13 Score=142.20 Aligned_cols=227 Identities=16% Similarity=0.162 Sum_probs=151.2
Q ss_pred CcccccCcHHHHHHHHHHH-HHhcCchhhhhcCCCCCceEEE--EcCCCCcHHHHHHHHHHhc---------CCCEEEEe
Q 009974 75 TFKDVKGCDDAKQELVEVV-EYLKNPSKFTRLGGKLPKGILL--TGAPGTGKTLLAKAIAGEA---------GVPFFYRA 142 (521)
Q Consensus 75 ~f~di~G~~~~k~~L~~~v-~~l~~~~~~~~~g~~~p~~vLL--~GppGtGKT~la~alA~~~---------~~~~~~i~ 142 (521)
..++++|.++..+.|.+.+ ...... ....+..++| +||||+|||++++++++.+ +.++++++
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSG------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTS------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcC------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 3477899999888888877 543211 0023558999 9999999999999999876 56778888
Q ss_pred Cchhh------hhh---h-------hhhh-HHHHHHHHHHH-hcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhh
Q 009974 143 GSEFE------EMF---V-------GVGA-RRVRSLFQAAK-KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMD 204 (521)
Q Consensus 143 ~~~~~------~~~---~-------g~~~-~~i~~~f~~a~-~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~ 204 (521)
|.... ... . +... .....+..... ...|.+|+|||+|.+..... .....+..++..+.
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~----~~~~~l~~l~~~~~ 169 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR----IAAEDLYTLLRVHE 169 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT----SCHHHHHHHHTHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC----cchHHHHHHHHHHH
Confidence 74321 110 0 1111 11222222222 35588999999999854211 12455666666655
Q ss_pred cCcc-C--CceEEEeecCCCC---CCC---ccccCCCccceEEecCCCCHHHHHHHHHHHhccC---CCCCcccHHHHHh
Q 009974 205 GFEQ-N--EGIILMAATNLPD---ILD---PALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK---PLADDVDVKAIAR 272 (521)
Q Consensus 205 ~~~~-~--~~vivI~ttn~~~---~ld---~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~---~~~~~~~l~~la~ 272 (521)
.... . .++.+|++||.++ .++ +.+.+ +|...+.+++++.++..++++.++... ...++..+..++.
T Consensus 170 ~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 247 (412)
T 1w5s_A 170 EIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISD 247 (412)
T ss_dssp HSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHH
T ss_pred hcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 4321 2 6788888887664 233 45555 566669999999999999998776421 1123344667777
Q ss_pred cCC------CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 009974 273 GTP------GFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRIL 314 (521)
Q Consensus 273 ~~~------g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~~ 314 (521)
.+. | +++.+.++++.|...+..++...++.+++..++....
T Consensus 248 ~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 248 VYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 777 6 6889999999888888888888999999988887643
No 80
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.52 E-value=3.4e-14 Score=126.27 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=81.6
Q ss_pred cccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhhhhh
Q 009974 78 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVG 154 (521)
Q Consensus 78 di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~g~~ 154 (521)
+++|.++..+++.+.+..+.. .+.++||+||||||||++|+++++.. +.||+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 678999998888887775432 23479999999999999999999986 78999 999876553
Q ss_pred hHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCC
Q 009974 155 ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 221 (521)
Q Consensus 155 ~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~ 221 (521)
......|..+.. ++|||||+|.+. ......|+..+.. ...++.+|+|||.+
T Consensus 66 -~~~~~~~~~a~~---g~l~ldei~~l~----------~~~q~~Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 -PQLNDFIALAQG---GTLVLSHPEHLT----------REQQYHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp -SCHHHHHHHHTT---SCEEEECGGGSC----------HHHHHHHHHHHHS--SSCSSCEEEEESSC
T ss_pred -hhhhcHHHHcCC---cEEEEcChHHCC----------HHHHHHHHHHHhh--cCCCEEEEEECCcC
Confidence 223455666543 599999999983 2344556666643 34457788899875
No 81
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.51 E-value=1.5e-14 Score=128.34 Aligned_cols=112 Identities=18% Similarity=0.223 Sum_probs=81.2
Q ss_pred cccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhhhhhHH
Q 009974 78 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARR 157 (521)
Q Consensus 78 di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~ 157 (521)
+++|.++..+++.+.+..+.. .+.++||+||||||||++|+++++..+ ||+.++|+.+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 578999999988888875432 234799999999999999999999888 99999999876543
Q ss_pred HHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCC
Q 009974 158 VRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 221 (521)
Q Consensus 158 i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~ 221 (521)
....|..+. +++|||||+|.+.. .....++..++.. .+.++.+|+|||.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~----------~~q~~Ll~~l~~~-~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSR----------NIQTGITFIIGKA-ERCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCH----------HHHHHHHHHHHHH-TTTTCEEEEEEEEC
T ss_pred hhhHHHhCC---CCeEEEeChHHCCH----------HHHHHHHHHHHhC-CCCCEEEEEecCCC
Confidence 345566554 45999999999832 3344455555532 24567888888865
No 82
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.51 E-value=3.2e-13 Score=136.87 Aligned_cols=160 Identities=16% Similarity=0.192 Sum_probs=115.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCC------------------------EEEEeCchhhhhhhhhhhHHHHHHH
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------------------FFYRAGSEFEEMFVGVGARRVRSLF 162 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~~~~------------------------~~~i~~~~~~~~~~g~~~~~i~~~f 162 (521)
.+.|+++||+||||+|||++|+++|+.+.++ ++.++..+- -...+...++.++
T Consensus 21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~---~~~~~i~~ir~l~ 97 (334)
T 1a5t_A 21 GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG---KNTLGVDAVREVT 97 (334)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT---CSSBCHHHHHHHH
T ss_pred CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc---CCCCCHHHHHHHH
Confidence 4567789999999999999999999987543 233332100 0012234567777
Q ss_pred HHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEE
Q 009974 163 QAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHI 238 (521)
Q Consensus 163 ~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i 238 (521)
+.+.. +.+.|++|||+|.+. ....+.|+..++. +..++++|.+||.++.+.+.+++ |+ ..+
T Consensus 98 ~~~~~~~~~~~~kvviIdead~l~----------~~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~ 162 (334)
T 1a5t_A 98 EKLNEHARLGGAKVVWVTDAALLT----------DAAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RC-RLH 162 (334)
T ss_dssp HHTTSCCTTSSCEEEEESCGGGBC----------HHHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TS-EEE
T ss_pred HHHhhccccCCcEEEEECchhhcC----------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cc-eee
Confidence 66543 346799999999993 3567788888884 45567888889999999999998 87 479
Q ss_pred ecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHH
Q 009974 239 VVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIA 289 (521)
Q Consensus 239 ~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A 289 (521)
.|++|+.++..++++..+ .. ++..+..++..+.| +++.+.++++.+
T Consensus 163 ~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~~~ 208 (334)
T 1a5t_A 163 YLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQGD 208 (334)
T ss_dssp ECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTSSH
T ss_pred eCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhccc
Confidence 999999999999998876 22 34445677776655 677766666543
No 83
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.50 E-value=2.6e-13 Score=148.35 Aligned_cols=217 Identities=24% Similarity=0.304 Sum_probs=135.8
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCC---EEEEeCchh
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP---FFYRAGSEF 146 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~---~~~i~~~~~ 146 (521)
..++.+|++++|++.+++.+...+.. ..+++|+||||||||++|+++++.+... .+.+.+...
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE 99 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred cccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence 34456899999999998777766641 1379999999999999999999987432 122211110
Q ss_pred h--------------hhhh------------------------------------------hhhhHHHHHHHHH------
Q 009974 147 E--------------EMFV------------------------------------------GVGARRVRSLFQA------ 164 (521)
Q Consensus 147 ~--------------~~~~------------------------------------------g~~~~~i~~~f~~------ 164 (521)
. .... .........+|..
T Consensus 100 ~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~ 179 (604)
T 3k1j_A 100 DENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPF 179 (604)
T ss_dssp CTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC
T ss_pred cccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechh
Confidence 0 0000 0000001111110
Q ss_pred -----------------HHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcC-------------------cc
Q 009974 165 -----------------AKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF-------------------EQ 208 (521)
Q Consensus 165 -----------------a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~-------------------~~ 208 (521)
.....+.+|||||+|.+. ....+.|+..|+.- ..
T Consensus 180 ~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~----------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~ 249 (604)
T 3k1j_A 180 QSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLS----------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPV 249 (604)
T ss_dssp ----CCCCGGGGEECCHHHHTTTSEEEETTGGGSC----------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCE
T ss_pred hcCCccccccccccCceeeecCCCEEEEechhhCC----------HHHHHHHHHHHHcCcEEecccccccccccCCCCcc
Confidence 011235699999999982 23445555555421 11
Q ss_pred CCceEEEeecCCC--CCCCccccCCCccc---eEEecCCC---CHHHHHHHHHHHhccC------CCCCcccHHHHHhc-
Q 009974 209 NEGIILMAATNLP--DILDPALTRPGRFD---RHIVVPNP---DVRGRQEILELYLQDK------PLADDVDVKAIARG- 273 (521)
Q Consensus 209 ~~~vivI~ttn~~--~~ld~al~r~gRf~---~~i~~~~P---~~~~r~~il~~~l~~~------~~~~~~~l~~la~~- 273 (521)
..++.||++||+. ..++++|++ ||+ ..+.++.. ..+....+++.+.+.. ...++..+..+.+.
T Consensus 250 p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~ 327 (604)
T 3k1j_A 250 PCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREA 327 (604)
T ss_dssp ECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHH
T ss_pred ceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHH
Confidence 2467899999986 679999998 996 45666532 3444555555444321 11123334555443
Q ss_pred --CCCC------CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 009974 274 --TPGF------NGADLANLVNIAAIKAAVDGGEKLTATELEFAKDR 312 (521)
Q Consensus 274 --~~g~------s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~ 312 (521)
..|- +.+++.++++.|...|..++.+.|+.+|+.+|+..
T Consensus 328 ~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 328 QKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 2453 79999999999999998899999999999999864
No 84
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=1.8e-12 Score=129.52 Aligned_cols=142 Identities=12% Similarity=0.158 Sum_probs=105.4
Q ss_pred CcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc------CCCEEEEeCchhhhhhhhhh
Q 009974 81 GCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA------GVPFFYRAGSEFEEMFVGVG 154 (521)
Q Consensus 81 G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~------~~~~~~i~~~~~~~~~~g~~ 154 (521)
|++++.+.|+..+.. .+ +..+|||||||+|||++|+++|+.+ ...++.+++++- ..+
T Consensus 1 g~~~~~~~L~~~i~~-----------~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------SE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIG 63 (305)
T ss_dssp ---CHHHHHHHHHHT-----------CS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBC
T ss_pred ChHHHHHHHHHHHHC-----------CC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCC
Confidence 566677777776641 22 3489999999999999999999864 346777776421 123
Q ss_pred hHHHHHHHHHHHhc----CCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccC
Q 009974 155 ARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTR 230 (521)
Q Consensus 155 ~~~i~~~f~~a~~~----~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r 230 (521)
...++.+++.+... ...|+||||+|.+ .....|.|+..++. +...+++|.+||.++.+.+.+++
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~l----------t~~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~tI~S 131 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERM----------TQQAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTIKS 131 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGB----------CHHHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHh----------CHHHHHHHHHHHhC--CCCCeEEEEEECChHhChHHHHc
Confidence 34577777777532 2469999999999 34567889998884 44567777788889999999998
Q ss_pred CCccceEEecCCCCHHHHHHHHHHHh
Q 009974 231 PGRFDRHIVVPNPDVRGRQEILELYL 256 (521)
Q Consensus 231 ~gRf~~~i~~~~P~~~~r~~il~~~l 256 (521)
| .+.|++|+.++..+.++..+
T Consensus 132 --R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 132 --R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp --T---SEEEECCCCHHHHHHHHHHH
T ss_pred --e---eEeCCCCCHHHHHHHHHHHh
Confidence 7 88999999999999998877
No 85
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.37 E-value=1.6e-12 Score=134.36 Aligned_cols=204 Identities=20% Similarity=0.244 Sum_probs=128.7
Q ss_pred cccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhh-
Q 009974 76 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV- 151 (521)
Q Consensus 76 f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~- 151 (521)
+++++|.++..+++.+.+..+... ..+++|+|++|||||++|+++.... +.||+.++|+.+.....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~----------~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCA----------ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTC----------CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCC----------CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 567888888777777777664432 2368999999999999999998865 47999999988654321
Q ss_pred ----h--------hhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcC-----c----cCC
Q 009974 152 ----G--------VGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF-----E----QNE 210 (521)
Q Consensus 152 ----g--------~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~-----~----~~~ 210 (521)
| ... .....|..|.. .+||||||+.+. ...+..|+..++.- . ...
T Consensus 206 ~elfg~~~g~~tga~~-~~~g~~~~a~~---gtlfldei~~l~----------~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 271 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVS-SKEGFFELADG---GTLFLDEIGELS----------LEAQAKLLRVIESGKFYRLGGRKEIEV 271 (387)
T ss_dssp HHHHCBCTTSSTTCCS-CBCCHHHHTTT---SEEEEESGGGCC----------HHHHHHHHHHHHHSEECCBTCCSBEEC
T ss_pred HHhcCCCCCCCCCccc-ccCCceeeCCC---cEEEEcChhhCC----------HHHHHHHHHHHhcCcEEeCCCCceeec
Confidence 1 110 12245555554 499999999992 33444555554421 1 123
Q ss_pred ceEEEeecCCCCCCCccccCCCccce-------EEecCCCCHHHH----HHHHHHHhcc----CCCC----CcccHHHHH
Q 009974 211 GIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGR----QEILELYLQD----KPLA----DDVDVKAIA 271 (521)
Q Consensus 211 ~vivI~ttn~~~~ld~al~r~gRf~~-------~i~~~~P~~~~r----~~il~~~l~~----~~~~----~~~~l~~la 271 (521)
++.+|+|||..- . .+.+.|+|.. .+.+..|...+| ..++++++.. .+.. ++..+..+.
T Consensus 272 ~~rii~at~~~l--~-~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~ 348 (387)
T 1ny5_A 272 NVRILAATNRNI--K-ELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLL 348 (387)
T ss_dssp CCEEEEEESSCH--H-HHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHH
T ss_pred cEEEEEeCCCCH--H-HHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 578999999642 1 2222344432 344556666555 3455665532 2211 223355666
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 009974 272 RGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFA 309 (521)
Q Consensus 272 ~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a 309 (521)
.+..-.+.++|++++++|...+ .+..|+.+|+...
T Consensus 349 ~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~ 383 (387)
T 1ny5_A 349 SYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCL 383 (387)
T ss_dssp HSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHh
Confidence 6655457889999999887654 4568999888643
No 86
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.36 E-value=8.2e-13 Score=155.98 Aligned_cols=151 Identities=17% Similarity=0.244 Sum_probs=107.5
Q ss_pred CCCcCCcccccCcHHHHHHHHHHHHH-hcC----------chhhhh------cC----------CCCCce--EEEEcCCC
Q 009974 70 EKNVKTFKDVKGCDDAKQELVEVVEY-LKN----------PSKFTR------LG----------GKLPKG--ILLTGAPG 120 (521)
Q Consensus 70 ~~~~~~f~di~G~~~~k~~L~~~v~~-l~~----------~~~~~~------~g----------~~~p~~--vLL~GppG 120 (521)
.....+|+|+.|.+++|+.+.+.+.+ +.. ++.|.. .| +-+|+| +|+|||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 34447999999999999999998877 422 445544 22 225666 99999999
Q ss_pred CcHHHHHHHHHHhc---CCCEEEEeCchhh------------hhhhhh----hhHHHHHHHHHHHhcCCcEEEEcccccc
Q 009974 121 TGKTLLAKAIAGEA---GVPFFYRAGSEFE------------EMFVGV----GARRVRSLFQAAKKKAPCIIFIDEIDAV 181 (521)
Q Consensus 121 tGKT~la~alA~~~---~~~~~~i~~~~~~------------~~~~g~----~~~~i~~~f~~a~~~~p~Il~IDEiD~l 181 (521)
||||+||++++.+. +.|.++++..+.. +.|.++ +++.++.+|..|+...||++|+|++|+|
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhc
Confidence 99999999999876 5677777766533 345556 7889999999999999999999999999
Q ss_pred ccCCc---CC----CcccHHHHHHHHHhhhcCccCCceEEEeecCCC
Q 009974 182 GSTRK---QW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 221 (521)
Q Consensus 182 ~~~~~---~~----~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~ 221 (521)
.+.+. .. .+-..+.+++++..+++.....+|+|| +||+.
T Consensus 1173 ~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1173 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred CcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 88742 11 123356799999999988777888888 66654
No 87
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.31 E-value=6.8e-12 Score=98.98 Aligned_cols=75 Identities=23% Similarity=0.419 Sum_probs=71.5
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhc
Q 009974 241 PNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILM 315 (521)
Q Consensus 241 ~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~~~ 315 (521)
|+|+.++|.+||+.|+++.++..++|+..+|..|+||||+||.++|++|+..|.+++...|+.+||..|++++..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 689999999999999999888889999999999999999999999999999999999999999999999998764
No 88
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.29 E-value=8.8e-12 Score=100.03 Aligned_cols=78 Identities=21% Similarity=0.359 Sum_probs=73.0
Q ss_pred ecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcC
Q 009974 239 VVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMG 316 (521)
Q Consensus 239 ~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~~~~ 316 (521)
.-.+||.++|.+||+.++++.++..++|+..||+.|.||||+||.++|++|++.|.++....|+.+||..|++++.++
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 346899999999999999998888899999999999999999999999999999999999999999999999998764
No 89
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.25 E-value=4.4e-11 Score=147.17 Aligned_cols=137 Identities=23% Similarity=0.326 Sum_probs=94.2
Q ss_pred ceEEEEcCCCCcHHHHH-HHHHHhcCCCEEEEeCchhhhhhhhhhhHHHHHHHHHHH---------------hcCCcEEE
Q 009974 111 KGILLTGAPGTGKTLLA-KAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAK---------------KKAPCIIF 174 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la-~alA~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~---------------~~~p~Il~ 174 (521)
+++||+||||||||++| +++++..+.+++.++++...+. ..+...+.... .++++|+|
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlF 1341 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLF 1341 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceEEEE
Confidence 58999999999999999 5555555778888888765432 23333343321 23357999
Q ss_pred EccccccccCCcCCCcccHHHHHHHHHhhhcCccC--------CceEEEeecCCCC-----CCCccccCCCccceEEecC
Q 009974 175 IDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQN--------EGIILMAATNLPD-----ILDPALTRPGRFDRHIVVP 241 (521)
Q Consensus 175 IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~--------~~vivI~ttn~~~-----~ld~al~r~gRf~~~i~~~ 241 (521)
|||+|.....+- +.......+.+++. ..++... .++.+|||||+|. .|+++++| || ..+.++
T Consensus 1342 iDEinmp~~d~y-g~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~i~ 1416 (2695)
T 4akg_A 1342 CDEINLPKLDKY-GSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AILYLG 1416 (2695)
T ss_dssp EETTTCSCCCSS-SCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEECC
T ss_pred eccccccccccc-CchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEEEeC
Confidence 999997433221 11223344444442 2222211 3589999999994 79999999 99 789999
Q ss_pred CCCHHHHHHHHHHHhcc
Q 009974 242 NPDVRGRQEILELYLQD 258 (521)
Q Consensus 242 ~P~~~~r~~il~~~l~~ 258 (521)
.|+.+++..|+..++..
T Consensus 1417 ~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1417 YPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp CCTTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988754
No 90
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.24 E-value=2.4e-11 Score=98.11 Aligned_cols=78 Identities=21% Similarity=0.305 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcCccccc
Q 009974 244 DVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMGTERKT 321 (521)
Q Consensus 244 ~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~~~~~~~~~ 321 (521)
|.++|.+||+.++++.++..++|+..||..|+||||+||.++|++|++.|.+++...|+.+||..|++++.+|..++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~ 79 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFS 79 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCccccc
Confidence 567999999999999998899999999999999999999999999999999999999999999999999998876554
No 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.19 E-value=4.3e-11 Score=109.79 Aligned_cols=133 Identities=13% Similarity=0.180 Sum_probs=75.7
Q ss_pred cCCcccccCcH-HHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCchhh
Q 009974 73 VKTFKDVKGCD-DAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFE 147 (521)
Q Consensus 73 ~~~f~di~G~~-~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~----~~~~~~i~~~~~~ 147 (521)
..+|+++++.. ..++.+..+..++.+- ....+.+++|+||||||||++++++++.+ |..++++++.++.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~ 79 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHNF------NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLI 79 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHSC------CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHhc------cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 45899988743 2333333333333221 12224689999999999999999999876 6677788877765
Q ss_pred hhhhhhhhHH-HHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCC
Q 009974 148 EMFVGVGARR-VRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 222 (521)
Q Consensus 148 ~~~~g~~~~~-i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~ 222 (521)
..+....... ...++... ..|.+|+|||++.... +......+..++.... . .+..+|.|||.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~~-----~~~~~~~l~~ll~~~~---~-~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 80 FRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSERL-----SDWQRELISYIITYRY---N-NLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSCC-----CHHHHHHHHHHHHHHH---H-TTCEEEEECCCCS
T ss_pred HHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCcC-----CHHHHHHHHHHHHHHH---H-cCCCEEEEcCCCh
Confidence 5432211100 01122222 2578999999985421 1223344444444332 1 2345666777653
No 92
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.14 E-value=1.2e-10 Score=119.37 Aligned_cols=190 Identities=20% Similarity=0.276 Sum_probs=116.0
Q ss_pred ccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEEeCchhhhhhh---
Q 009974 77 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSEFEEMFV--- 151 (521)
Q Consensus 77 ~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~--~~~~i~~~~~~~~~~--- 151 (521)
.+++|.+....++.+.+..+.... ..++++|++||||+++|+++....+. +|+.++|..+.....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~----------~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSK----------APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSC----------SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccc----------hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 457888888888877776554322 26999999999999999999987654 399999987643211
Q ss_pred --hhh-------hHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcC-----cc----CCceE
Q 009974 152 --GVG-------ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF-----EQ----NEGII 213 (521)
Q Consensus 152 --g~~-------~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~-----~~----~~~vi 213 (521)
|.. .+.....|+.|..+ +||||||+.+. ...+..|+..++.- .. ...+.
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~g---tlfldei~~l~----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~r 265 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQG---TLFLDEVGELD----------QRVQAKLLRVLETGSFTRLGGNQKIEVDIR 265 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTS---EEEEETGGGSC----------HHHHHHHHHHHHHSEECCBTCCCBEECCCE
T ss_pred hcCccccccCCcccccCChHhhcCCC---eEEecChhhCC----------HHHHHHHHHHHHhCCcccCCCCcceeeeeE
Confidence 110 01112345555544 99999999992 34445555555421 11 22578
Q ss_pred EEeecCCCCCCCccccCCCccce-------EEecCCCCHHH----HHHHHHHHhccC----CC----CCcccHHHHHhcC
Q 009974 214 LMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRG----RQEILELYLQDK----PL----ADDVDVKAIARGT 274 (521)
Q Consensus 214 vI~ttn~~~~ld~al~r~gRf~~-------~i~~~~P~~~~----r~~il~~~l~~~----~~----~~~~~l~~la~~~ 274 (521)
+|++||.. +.. ....|+|.. .+.+..|...+ ...++++++... +. -++..+..+..+.
T Consensus 266 ii~at~~~--l~~-~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 342 (368)
T 3dzd_A 266 VISATNKN--LEE-EIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQE 342 (368)
T ss_dssp EEEEESSC--HHH-HHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCC
T ss_pred EEEecCCC--HHH-HHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC
Confidence 99999953 222 222344433 33444455444 455666666431 11 1233356666666
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 009974 275 PGFNGADLANLVNIAAIK 292 (521)
Q Consensus 275 ~g~s~~dl~~lv~~A~~~ 292 (521)
..-+.+++++++++|...
T Consensus 343 wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 343 WKGNVRELKNLIERAVIL 360 (368)
T ss_dssp CTTHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHh
Confidence 445778888888877654
No 93
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.13 E-value=2.1e-10 Score=118.71 Aligned_cols=213 Identities=16% Similarity=0.167 Sum_probs=122.3
Q ss_pred cccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHH-HHhcCCCEEEEeCc--h---hhhhhh
Q 009974 78 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAI-AGEAGVPFFYRAGS--E---FEEMFV 151 (521)
Q Consensus 78 di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~al-A~~~~~~~~~i~~~--~---~~~~~~ 151 (521)
.|.|++.+|..|.-.+. ....+ .+-.-++||.|+||| ||++|+++ ++-+.... +++.. . +.....
T Consensus 214 pI~G~e~vK~aLll~L~--GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 214 PLPGAEEVGKMLALQLF--SCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLRRTELTDLTAVLK 284 (506)
T ss_dssp CSTTCHHHHHHHHHHHT--TCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGGGCCHHHHSEEEE
T ss_pred ccCCCHHHHHHHHHHHc--CCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCCCCCccCceEEEE
Confidence 37788777655544332 11000 111226999999999 99999999 76554322 22211 0 110000
Q ss_pred hh-hhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhc-------CccCCceEEEeecCCCC-
Q 009974 152 GV-GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG-------FEQNEGIILMAATNLPD- 222 (521)
Q Consensus 152 g~-~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~-------~~~~~~vivI~ttn~~~- 222 (521)
+. +...-...+..|.. .|+|||||+.+ ...++..|++.|+. ..-+.++.||||+|...
T Consensus 285 ~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~----------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~ 351 (506)
T 3f8t_A 285 EDRGWALRAGAAVLADG---GILAVDHLEGA----------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQ 351 (506)
T ss_dssp ESSSEEEEECHHHHTTT---SEEEEECCTTC----------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC-
T ss_pred cCCCcccCCCeeEEcCC---CeeehHhhhhC----------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccc
Confidence 00 00000122334433 39999999998 34556666666653 12245689999999865
Q ss_pred ----------CCCccccCCCccceEE-ecCCCCHHHH---------HHHHHH---Hhc-c--CCCCCcccHHHHH-----
Q 009974 223 ----------ILDPALTRPGRFDRHI-VVPNPDVRGR---------QEILEL---YLQ-D--KPLADDVDVKAIA----- 271 (521)
Q Consensus 223 ----------~ld~al~r~gRf~~~i-~~~~P~~~~r---------~~il~~---~l~-~--~~~~~~~~l~~la----- 271 (521)
.|++++++ |||..+ .++.|+.+.- .+.++. +.+ . .+.-++...+.+.
T Consensus 352 yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~ 429 (506)
T 3f8t_A 352 WPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYET 429 (506)
T ss_dssp -CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHH
T ss_pred cCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHH
Confidence 78889998 998754 4455654331 112222 222 1 1111111111111
Q ss_pred ------h------cCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 009974 272 ------R------GTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRIL 314 (521)
Q Consensus 272 ------~------~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~~ 314 (521)
. ...|.|++.+..+++.|...|..++++.++.+|+.+|+.-+.
T Consensus 430 tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 430 RREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVD 484 (506)
T ss_dssp HHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred HhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHH
Confidence 0 355889999999999999999999999999999999987543
No 94
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.12 E-value=2.7e-10 Score=106.38 Aligned_cols=104 Identities=24% Similarity=0.265 Sum_probs=63.7
Q ss_pred CcCCcccccCcHHHHH-HHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhh
Q 009974 72 NVKTFKDVKGCDDAKQ-ELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE 147 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~-~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~ 147 (521)
...+|+++++.+...+ .+..+..++..... ...|++++|+||||||||++|+++++.+ +.++++++++++.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 3458999998663222 23333333221110 1124689999999999999999999977 6789999988776
Q ss_pred hhhhhhh-hHHHHHHHHHHHhcCCcEEEEccccccc
Q 009974 148 EMFVGVG-ARRVRSLFQAAKKKAPCIIFIDEIDAVG 182 (521)
Q Consensus 148 ~~~~g~~-~~~i~~~f~~a~~~~p~Il~IDEiD~l~ 182 (521)
....... ...+..++..... +.+|+|||++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 95 RELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred HHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 5432211 0111223333332 3599999997753
No 95
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.04 E-value=4e-10 Score=89.84 Aligned_cols=73 Identities=18% Similarity=0.267 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcC
Q 009974 244 DVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMG 316 (521)
Q Consensus 244 ~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~~~~ 316 (521)
|.++|.+||+.++++.++..++|+..+|..|.||||+||.++|++|+..|.+++...|+.+||..|+.++.++
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccC
Confidence 6789999999999998888899999999999999999999999999999999998999999999999998664
No 96
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.00 E-value=2.8e-08 Score=100.24 Aligned_cols=185 Identities=17% Similarity=0.124 Sum_probs=112.5
Q ss_pred CcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh-------
Q 009974 75 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE------- 147 (521)
Q Consensus 75 ~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~------- 147 (521)
.-+.++|.++..+.|.+ +. . +.++|+||+|+|||++++.++++.+.+++++++....
T Consensus 11 ~~~~~~gR~~el~~L~~-l~---~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR---A------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISY 74 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC---S------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCH
T ss_pred CHHHhcChHHHHHHHHH-hc---C------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCH
Confidence 45677999887666655 32 1 2799999999999999999999988778888876430
Q ss_pred hhhhhh---------------------------------------hhHHHHHHHHHHHhc--CCcEEEEccccccccCCc
Q 009974 148 EMFVGV---------------------------------------GARRVRSLFQAAKKK--APCIIFIDEIDAVGSTRK 186 (521)
Q Consensus 148 ~~~~g~---------------------------------------~~~~i~~~f~~a~~~--~p~Il~IDEiD~l~~~~~ 186 (521)
..+... ....+..++...... .|.+|+|||++.+....
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~- 153 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR- 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT-
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC-
Confidence 000000 011234455444432 38899999999985421
Q ss_pred CCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCC---------CCCccccCCCccceEEecCCCCHHHHHHHHHHHhc
Q 009974 187 QWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD---------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ 257 (521)
Q Consensus 187 ~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~---------~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~ 257 (521)
.......+..+... ..++.+|.+++... .....+ .||+...+.+++.+.++..+++...+.
T Consensus 154 --~~~~~~~l~~~~~~------~~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 154 --GVNLLPALAYAYDN------LKRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp --TCCCHHHHHHHHHH------CTTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred --chhHHHHHHHHHHc------CCCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHHHHHHHHH
Confidence 11122333333322 12455555554321 111122 246667899999999999999988765
Q ss_pred cCCCCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 009974 258 DKPLADDVDVKAIARGTPGFNGADLANLVNI 288 (521)
Q Consensus 258 ~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~ 288 (521)
..+...+. ...+...+.| .|.-+..++..
T Consensus 224 ~~~~~~~~-~~~i~~~t~G-~P~~l~~~~~~ 252 (357)
T 2fna_A 224 EADIDFKD-YEVVYEKIGG-IPGWLTYFGFI 252 (357)
T ss_dssp HHTCCCCC-HHHHHHHHCS-CHHHHHHHHHH
T ss_pred HcCCCCCc-HHHHHHHhCC-CHHHHHHHHHH
Confidence 33322222 3677788877 46667666653
No 97
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.95 E-value=7.5e-08 Score=96.92 Aligned_cols=188 Identities=16% Similarity=0.141 Sum_probs=111.5
Q ss_pred CcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh-------
Q 009974 75 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE------- 147 (521)
Q Consensus 75 ~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~------- 147 (521)
.-+.++|.++..+.|.+.+.. + +.++|+||+|+|||++++.++++.+ ++++++....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHIT 73 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBC
T ss_pred ChHhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCC
Confidence 445679999988888776652 1 3799999999999999999999875 6777764331
Q ss_pred -----hhhh--------------------hhh----hHHHHHHHHH----HHhcCCcEEEEccccccccCCcCCCcccHH
Q 009974 148 -----EMFV--------------------GVG----ARRVRSLFQA----AKKKAPCIIFIDEIDAVGSTRKQWEGHTKK 194 (521)
Q Consensus 148 -----~~~~--------------------g~~----~~~i~~~f~~----a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~ 194 (521)
..+. +.. ...+..++.. +....|.+|+|||++.+..... .....
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~---~~~~~ 150 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS---RGGKE 150 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT---TTTHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc---cchhh
Confidence 0000 000 0112223322 2222489999999999843100 01122
Q ss_pred HHHHHHHhhhcCccCCceEEEeecCCCC---------CCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCC-Cc
Q 009974 195 TLHQLLVEMDGFEQNEGIILMAATNLPD---------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DD 264 (521)
Q Consensus 195 ~l~~ll~~l~~~~~~~~vivI~ttn~~~---------~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~-~~ 264 (521)
.+..+-..++.. .++.+|.|+.... .....+. ||+...+.+++.+.++..++++..+...+.. ++
T Consensus 151 ~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~ 225 (350)
T 2qen_A 151 LLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPE 225 (350)
T ss_dssp HHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCH
T ss_pred HHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 333332333321 3455555543321 1122222 4666789999999999999998877544332 33
Q ss_pred ccHHHHHhcCCCCCHHHHHHHHH
Q 009974 265 VDVKAIARGTPGFNGADLANLVN 287 (521)
Q Consensus 265 ~~l~~la~~~~g~s~~dl~~lv~ 287 (521)
.....+...+.| .|.-+..++.
T Consensus 226 ~~~~~i~~~tgG-~P~~l~~~~~ 247 (350)
T 2qen_A 226 NEIEEAVELLDG-IPGWLVVFGV 247 (350)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHH
Confidence 446677777777 4666666654
No 98
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.93 E-value=3.7e-10 Score=89.79 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcCc
Q 009974 246 RGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMGT 317 (521)
Q Consensus 246 ~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~~~~~ 317 (521)
++|.+||+.++++.++..++|+..+|..|+||||+||.++|++|+..|.+++...|+.+||..|+.++..+.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~ 72 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTD 72 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC--
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCc
Confidence 468999999999888878999999999999999999999999999999999999999999999999886553
No 99
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.92 E-value=7e-10 Score=98.74 Aligned_cols=102 Identities=19% Similarity=0.277 Sum_probs=65.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK 186 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~ 186 (521)
...++|+||+|+|||++++++++.+ |.+.+++++.++... +....|.+|+|||++.+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~-- 98 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE-- 98 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH--
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH--
Confidence 3579999999999999999999977 777888888776543 11235789999999886321
Q ss_pred CCCcccHHHHHHHHHhhhcCccCCce-EEEeecC-CCCCCC--ccccCCCccceEEe
Q 009974 187 QWEGHTKKTLHQLLVEMDGFEQNEGI-ILMAATN-LPDILD--PALTRPGRFDRHIV 239 (521)
Q Consensus 187 ~~~~~~~~~l~~ll~~l~~~~~~~~v-ivI~ttn-~~~~ld--~al~r~gRf~~~i~ 239 (521)
.+..+..++..+. .+... ++| ||| .|..+. +.+.+ |+..-..
T Consensus 99 -----~~~~l~~li~~~~---~~g~~~iii-ts~~~p~~l~~~~~L~S--Rl~~g~~ 144 (149)
T 2kjq_A 99 -----EQALLFSIFNRFR---NSGKGFLLL-GSEYTPQQLVIREDLRT--RMAYCLV 144 (149)
T ss_dssp -----HHHHHHHHHHHHH---HHTCCEEEE-EESSCTTTSSCCHHHHH--HGGGSEE
T ss_pred -----HHHHHHHHHHHHH---HcCCcEEEE-ECCCCHHHccccHHHHH--HHhcCee
Confidence 1333444444332 22233 444 555 455443 56665 6654333
No 100
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.91 E-value=5.6e-10 Score=110.75 Aligned_cols=116 Identities=20% Similarity=0.227 Sum_probs=70.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCC--EEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcC
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVP--FFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQ 187 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~--~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~ 187 (521)
.+.++|+||||||||+||.++|...+.+ |+.....+..+.+.......+..+++...... +|+||+++.+......
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~ 200 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGG 200 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-----
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccccccc
Confidence 3457999999999999999999875544 55542122222222233444455555555544 9999999998554322
Q ss_pred --CCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccc
Q 009974 188 --WEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPAL 228 (521)
Q Consensus 188 --~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al 228 (521)
..+...+.+.+++..|.++....++.+|.++| +...++++
T Consensus 201 ~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 201 NTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 11122355667777776655556778888888 55555554
No 101
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.86 E-value=4.9e-09 Score=104.78 Aligned_cols=101 Identities=21% Similarity=0.268 Sum_probs=60.3
Q ss_pred cCCcccccCcHHH-HHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCchhh
Q 009974 73 VKTFKDVKGCDDA-KQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFE 147 (521)
Q Consensus 73 ~~~f~di~G~~~~-k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~----~~~~~~i~~~~~~ 147 (521)
..+|+++.+.... ...+..+..++... +...+.+++|+||||||||++|+++|+++ +.++++++++++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 3589999975422 22222222332211 11124689999999999999999999855 4788888888776
Q ss_pred hhhhhhh-hHHHHHHHHHHHhcCCcEEEEcccccc
Q 009974 148 EMFVGVG-ARRVRSLFQAAKKKAPCIIFIDEIDAV 181 (521)
Q Consensus 148 ~~~~g~~-~~~i~~~f~~a~~~~p~Il~IDEiD~l 181 (521)
..+.... .......+.... .+.+|||||++..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 5433211 111112222222 3459999999765
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.83 E-value=3.3e-09 Score=99.03 Aligned_cols=129 Identities=19% Similarity=0.277 Sum_probs=82.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHh--------cC-CCEEEEeCchhhhhhh----------hh-----hhHHHHHHHHH
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGE--------AG-VPFFYRAGSEFEEMFV----------GV-----GARRVRSLFQA 164 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~--------~~-~~~~~i~~~~~~~~~~----------g~-----~~~~i~~~f~~ 164 (521)
.+.-.|++|+||||||++|.+++.. .| .+++..++.++..... .. ....+...+..
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 83 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK 83 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc
Confidence 3446899999999999999886433 35 7787777765532211 00 11222222211
Q ss_pred HHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCCCC
Q 009974 165 AKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPD 244 (521)
Q Consensus 165 a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~ 244 (521)
..+.++||+|||++.+.+.+....... .++..++. ....++-+|.+|+.+..|+.++++ |++.+++++.|.
T Consensus 84 -~~~~~~vliIDEAq~l~~~~~~~~e~~-----rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~ 154 (199)
T 2r2a_A 84 -PENIGSIVIVDEAQDVWPARSAGSKIP-----ENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNK 154 (199)
T ss_dssp -GGGTTCEEEETTGGGTSBCCCTTCCCC-----HHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECS
T ss_pred -cccCceEEEEEChhhhccCccccchhH-----HHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcc
Confidence 234578999999999966542211111 34444543 334566777888889999999887 999999988765
Q ss_pred HH
Q 009974 245 VR 246 (521)
Q Consensus 245 ~~ 246 (521)
..
T Consensus 155 ~~ 156 (199)
T 2r2a_A 155 MG 156 (199)
T ss_dssp SC
T ss_pred cC
Confidence 44
No 103
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.70 E-value=1.9e-07 Score=115.36 Aligned_cols=164 Identities=13% Similarity=0.129 Sum_probs=107.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG 190 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~ 190 (521)
.++++.||+|||||.+++++|+.+|.+++.++|++-.+. ..+..+|..+... ++.+++||++.+..
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~------~~lg~~~~g~~~~-Gaw~~~DE~nr~~~------- 711 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY------QVLSRLLVGITQI-GAWGCFDEFNRLDE------- 711 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH------HHHHHHHHHHHHH-TCEEEEETTTSSCH-------
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh------hHhhHHHHHHHhc-CCEeeehhhhhcCh-------
Confidence 479999999999999999999999999999999875442 3456667666543 36999999998722
Q ss_pred ccHHHHHHHHHh----hhc-----------CccCCceEEEeecCC----CCCCCccccCCCccceEEecCCCCHHHHHHH
Q 009974 191 HTKKTLHQLLVE----MDG-----------FEQNEGIILMAATNL----PDILDPALTRPGRFDRHIVVPNPDVRGRQEI 251 (521)
Q Consensus 191 ~~~~~l~~ll~~----l~~-----------~~~~~~vivI~ttn~----~~~ld~al~r~gRf~~~i~~~~P~~~~r~~i 251 (521)
.....+++.+.. +.. +.-+..+.|++|.|. ...|++++++ || +.+.+..||.+...+|
T Consensus 712 evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ei 788 (2695)
T 4akg_A 712 KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAEM 788 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHHH
Confidence 223333332222 211 122345678888884 3578999988 88 6899999999988887
Q ss_pred HHHHhccCCCCCcc-----c-HHHHHhc-----CCCCCHHHHHHHHHHHHHH
Q 009974 252 LELYLQDKPLADDV-----D-VKAIARG-----TPGFNGADLANLVNIAAIK 292 (521)
Q Consensus 252 l~~~l~~~~~~~~~-----~-l~~la~~-----~~g~s~~dl~~lv~~A~~~ 292 (521)
+-.-. ........ . +..+.+. ...|.-+.++.+++.|...
T Consensus 789 ~l~s~-Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~l 839 (2695)
T 4akg_A 789 ILQIM-GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPL 839 (2695)
T ss_dssp HHHHH-HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHhc-CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHh
Confidence 54322 11101010 0 1111111 2236789999988876543
No 104
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.60 E-value=4.4e-08 Score=100.20 Aligned_cols=120 Identities=15% Similarity=0.107 Sum_probs=77.7
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEcccccccc-
Q 009974 105 LGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGS- 183 (521)
Q Consensus 105 ~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~- 183 (521)
++.+.+..++|+||||+||||+++++++..+..++.+....-... ..+..+ ...+++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~------~~lg~~------~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLN------FELGVA------IDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHH------HHHGGG------TTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHH------HHHHHh------cchhHHHHHHHHHHHHH
Confidence 356677889999999999999999999988877665443321100 011111 2345789999998865
Q ss_pred CCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCC
Q 009974 184 TRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPN 242 (521)
Q Consensus 184 ~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~ 242 (521)
.+....+........+...+++ .+.|+.+||+++.+ +++.+|+|++..+....
T Consensus 232 ~r~l~~~~~~~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLPSGQGINNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCCCCSHHHHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HhhccccCcchHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 2211111111122334444553 35678889999999 79999999988776644
No 105
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.51 E-value=1.7e-07 Score=112.27 Aligned_cols=113 Identities=16% Similarity=0.224 Sum_probs=79.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhh----hhhh------------hhhHHHHHHHHHHH
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE----MFVG------------VGARRVRSLFQAAK 166 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~----~~~g------------~~~~~i~~~f~~a~ 166 (521)
|.+.+++++|+||||||||+||.+++.++ |....+++...... ...| ..++.++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 35677899999999999999999998765 55677777654321 1112 23456677777888
Q ss_pred hcCCcEEEEccccccccCCc---C-C-Ccc--cHHHHHHHHHhhhcCccCCceEEEeec
Q 009974 167 KKAPCIIFIDEIDAVGSTRK---Q-W-EGH--TKKTLHQLLVEMDGFEQNEGIILMAAT 218 (521)
Q Consensus 167 ~~~p~Il~IDEiD~l~~~~~---~-~-~~~--~~~~l~~ll~~l~~~~~~~~vivI~tt 218 (521)
..+|++||||+++.+.+... . . +.. ..+.+.+++..|.+.....++++|.+.
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 89999999999998876421 1 1 111 256778888888877667777776553
No 106
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.48 E-value=6.9e-07 Score=111.12 Aligned_cols=136 Identities=18% Similarity=0.232 Sum_probs=86.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH-hcCCCEEEEeCchhhhhhhhhhhHHHHHHHHHH----H------------hcCCcEE
Q 009974 111 KGILLTGAPGTGKTLLAKAIAG-EAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAA----K------------KKAPCII 173 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~-~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a----~------------~~~p~Il 173 (521)
+++||+||||||||++++.... ..+.+++.++++.-... ..+...++.. + .++..|+
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta------~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP------ELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH------HHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH------HHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 4699999999999987765544 44667788888764332 2233333321 0 1233699
Q ss_pred EEccccccccCCcCCCcccHHHHHHHHHhhhcCcc--------CCceEEEeecCCC-----CCCCccccCCCccceEEec
Q 009974 174 FIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ--------NEGIILMAATNLP-----DILDPALTRPGRFDRHIVV 240 (521)
Q Consensus 174 ~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~--------~~~vivI~ttn~~-----~~ld~al~r~gRf~~~i~~ 240 (521)
||||++.-.... .+....-..+.+++.. .++.. -.++.+|+|+|.| ..++++++| ||. .+.+
T Consensus 1379 FiDDiNmp~~D~-yGtQ~~ielLrqlld~-~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~-vi~i 1453 (3245)
T 3vkg_A 1379 FCDEINLPSTDK-YGTQRVITFIRQMVEK-GGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP-ILLV 1453 (3245)
T ss_dssp EETTTTCCCCCT-TSCCHHHHHHHHHHHH-SEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC-EEEC
T ss_pred EecccCCCCccc-cccccHHHHHHHHHHc-CCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce-EEEe
Confidence 999998642211 1111223344444432 11111 2458899999988 368999999 885 6999
Q ss_pred CCCCHHHHHHHHHHHhc
Q 009974 241 PNPDVRGRQEILELYLQ 257 (521)
Q Consensus 241 ~~P~~~~r~~il~~~l~ 257 (521)
+.|+.++...|+..++.
T Consensus 1454 ~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1454 DFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999876654
No 107
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.46 E-value=1.3e-06 Score=88.15 Aligned_cols=176 Identities=16% Similarity=0.108 Sum_probs=113.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CC-CEEEEeCchhhhhhhhhhhHHHHHHHHHHH----hcCCcEEEEccccc
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA---GV-PFFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDA 180 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~---~~-~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~----~~~p~Il~IDEiD~ 180 (521)
.+..+|||||+|+||++.++.+++.+ +. ++..+.... ...++.+++.+. .+...|++|||+|.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---------NTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---------TCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---------CCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 45589999999999999999998865 22 222221111 122344444443 23456999999998
Q ss_pred -cccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCC------CCCCccccCCCccceEEecCCCCHHHHHHHHH
Q 009974 181 -VGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP------DILDPALTRPGRFDRHIVVPNPDVRGRQEILE 253 (521)
Q Consensus 181 -l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~------~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~ 253 (521)
+.. ...+.|+..++.. ..++++|.+++.+ ..+.+++.+ |. ..+.+.+|+.++....++
T Consensus 88 kl~~----------~~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 88 GPNA----------AINEQLLTLTGLL--HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp CCCT----------THHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHHHH
T ss_pred CCCh----------HHHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHHH
Confidence 632 3456677777743 2344444444433 234556665 55 578899999999999999
Q ss_pred HHhccCCCC-CcccHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 009974 254 LYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDR 312 (521)
Q Consensus 254 ~~l~~~~~~-~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~ 312 (521)
..++..++. ++..+..++..+.| +.+++.+.++.....+ +...||.+++...+..
T Consensus 153 ~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 153 ARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhh
Confidence 998776654 23346677776654 6677777666554432 4568999999887654
No 108
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.45 E-value=2.8e-07 Score=85.41 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=25.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFF 139 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~ 139 (521)
++++||||||||||++|.++|+.+...++
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 58999999999999999999999865543
No 109
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.43 E-value=5.4e-07 Score=94.86 Aligned_cols=128 Identities=15% Similarity=0.202 Sum_probs=99.7
Q ss_pred CcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEee---------cC---CCCCCCccccCCCccceE
Q 009974 170 PCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAA---------TN---LPDILDPALTRPGRFDRH 237 (521)
Q Consensus 170 p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~t---------tn---~~~~ld~al~r~gRf~~~ 237 (521)
|.|+||||+|.| .....+.|+..|+.... .++++++ ++ .+..+++.+++ ||..
T Consensus 296 ~~VliIDEa~~l----------~~~a~~aLlk~lEe~~~--~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~- 360 (456)
T 2c9o_A 296 PGVLFVDEVHML----------DIECFTYLHRALESSIA--PIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI- 360 (456)
T ss_dssp ECEEEEESGGGC----------BHHHHHHHHHHTTSTTC--CEEEEEECCSEEECBTTSSCEEETTCCHHHHT--TEEE-
T ss_pred ceEEEEechhhc----------CHHHHHHHHHHhhccCC--CEEEEecCCccccccccccccccccCChhHHh--hcce-
Confidence 469999999999 35678889998885433 3555555 33 26788899998 9976
Q ss_pred EecCCCCHHHHHHHHHHHhccCCCC-CcccHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 009974 238 IVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGT-PGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 313 (521)
Q Consensus 238 i~~~~P~~~~r~~il~~~l~~~~~~-~~~~l~~la~~~-~g~s~~dl~~lv~~A~~~a~~~~~~~it~~~~~~a~~~~ 313 (521)
+.|++|+.++..++++..+...... ++..+..++... .| +++...++++.|...|..++...|+.+|+.+|+.-+
T Consensus 361 ~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 361 IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 6999999999999999887643332 333456677666 44 899999999999999999999999999999998653
No 110
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.21 E-value=2.5e-06 Score=82.51 Aligned_cols=27 Identities=41% Similarity=0.422 Sum_probs=23.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCC
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGV 136 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~ 136 (521)
.++++||||||||||++|+++|+....
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 358999999999999999999997643
No 111
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.19 E-value=6e-06 Score=75.40 Aligned_cols=28 Identities=43% Similarity=0.654 Sum_probs=23.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFF 139 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~ 139 (521)
.+.|.||+|+||||+++.+++..++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4789999999999999999998765443
No 112
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.17 E-value=7.7e-06 Score=101.97 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=88.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhhhhhhhhhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH 191 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~ 191 (521)
|..+.||+|||||.+++.+|+.+|.+++.++|++-.+. ..+..+|.-+... .+..++|||+.+- ..
T Consensus 606 gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl~-------~~ 671 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRLE-------ER 671 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSSC-------HH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcCC-------HH
Confidence 57899999999999999999999999999999875442 2345555554432 3689999999882 12
Q ss_pred cHHHHHHHHHhh-------------h-c--CccCCceEEEeecCC----CCCCCccccCCCccceEEecCCCCHHHHHHH
Q 009974 192 TKKTLHQLLVEM-------------D-G--FEQNEGIILMAATNL----PDILDPALTRPGRFDRHIVVPNPDVRGRQEI 251 (521)
Q Consensus 192 ~~~~l~~ll~~l-------------~-~--~~~~~~vivI~ttn~----~~~ld~al~r~gRf~~~i~~~~P~~~~r~~i 251 (521)
.-.++.+.+..+ . | +.-+..+.|+.|.|. ...|+++++. || +.+.+..||.+...+|
T Consensus 672 vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~ei 748 (3245)
T 3vkg_A 672 ILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIAQV 748 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHHHH
Confidence 222222222211 1 1 122445778888884 3578999998 88 6799999999888887
Q ss_pred HH
Q 009974 252 LE 253 (521)
Q Consensus 252 l~ 253 (521)
+-
T Consensus 749 ~L 750 (3245)
T 3vkg_A 749 ML 750 (3245)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 113
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.07 E-value=9.8e-05 Score=79.95 Aligned_cols=178 Identities=12% Similarity=0.117 Sum_probs=97.4
Q ss_pred cCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEEeCch
Q 009974 73 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRAGSE 145 (521)
Q Consensus 73 ~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~-------~~~~~~i~~~~ 145 (521)
+..-..++|.+...++|.+.+... ...++-+.|+||+|+|||++|+.+++.. ...++.++.+.
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred CCCCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 345567899999877777765421 1124579999999999999999997532 12244443322
Q ss_pred h-----hhhh------hh----------hhhHHHHHHHHHH-Hh-cCCcEEEEccccccccCCcCCCcccHHHHHHHHHh
Q 009974 146 F-----EEMF------VG----------VGARRVRSLFQAA-KK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 202 (521)
Q Consensus 146 ~-----~~~~------~g----------~~~~~i~~~f~~a-~~-~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~ 202 (521)
. ...+ .+ .....+...+... .. ..|.+|+||+++.. ..+..
T Consensus 190 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~----------------~~l~~ 253 (591)
T 1z6t_A 190 QDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----------------WVLKA 253 (591)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH----------------HHHHT
T ss_pred CchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH----------------HHHHH
Confidence 1 1111 00 0011122222222 22 26899999999753 11222
Q ss_pred hhcCccCCceEEEeecCCCCCCCccccCCCccceEEe-cCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHH
Q 009974 203 MDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIV-VPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGAD 281 (521)
Q Consensus 203 l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~-~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~d 281 (521)
+ ..+..||.||..+..... . . +.. ..+. .+..+.++-.+++..++.............+++.+.|. |--
T Consensus 254 ---l--~~~~~ilvTsR~~~~~~~-~-~-~~~-~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~-PLa 323 (591)
T 1z6t_A 254 ---F--DSQCQILLTTRDKSVTDS-V-M-GPK-YVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGS-PLV 323 (591)
T ss_dssp ---T--CSSCEEEEEESCGGGGTT-C-C-SCE-EEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTC-HHH
T ss_pred ---h--cCCCeEEEECCCcHHHHh-c-C-CCc-eEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCC-cHH
Confidence 2 234456667765432211 1 1 111 2222 24678889999998887542211233467888888875 555
Q ss_pred HHHHH
Q 009974 282 LANLV 286 (521)
Q Consensus 282 l~~lv 286 (521)
|..+.
T Consensus 324 l~~~a 328 (591)
T 1z6t_A 324 VSLIG 328 (591)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 114
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.04 E-value=1.7e-05 Score=74.05 Aligned_cols=39 Identities=21% Similarity=0.026 Sum_probs=31.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCch
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 145 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~ 145 (521)
.+...-++|+||||+|||++++.++...+.++++++...
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 344456899999999999999999986677888887654
No 115
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.01 E-value=1.7e-05 Score=74.72 Aligned_cols=35 Identities=37% Similarity=0.528 Sum_probs=27.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeC
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAG 143 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~ 143 (521)
....++|+||||+|||++++.++... +.++++++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 34568999999999999999998643 556666654
No 116
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.94 E-value=2.9e-05 Score=79.01 Aligned_cols=113 Identities=17% Similarity=0.213 Sum_probs=65.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhh----hhh-----------hhHHHHHHHHH-HHh
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF----VGV-----------GARRVRSLFQA-AKK 167 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~----~g~-----------~~~~i~~~f~~-a~~ 167 (521)
.+....++|+||||+|||+||..++..+ +.++++++...-.... .|. ....+....+. .+.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~ 150 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRS 150 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhc
Confidence 3444579999999999999999998754 6788888765422111 110 11222222222 234
Q ss_pred cCCcEEEEccccccccCCcCC-C-c-----ccHHHHHHHHHhhhcCccCCceEEEeecC
Q 009974 168 KAPCIIFIDEIDAVGSTRKQW-E-G-----HTKKTLHQLLVEMDGFEQNEGIILMAATN 219 (521)
Q Consensus 168 ~~p~Il~IDEiD~l~~~~~~~-~-~-----~~~~~l~~ll~~l~~~~~~~~vivI~ttn 219 (521)
..+.+|+||.+..+....... . + ...+.+.+++..|..+....++.||.+..
T Consensus 151 ~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 151 GAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp TCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred CCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 668899999999997422110 0 0 11234555666665444455666666533
No 117
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.91 E-value=3.7e-05 Score=80.85 Aligned_cols=131 Identities=21% Similarity=0.296 Sum_probs=68.2
Q ss_pred ccccCCCCcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc---CC-CEEE
Q 009974 65 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GV-PFFY 140 (521)
Q Consensus 65 ~~~~~~~~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~---~~-~~~~ 140 (521)
++++|...+.+|+++- ++.++.+..++..+.... ..++|.||||||||+++.+++..+ +. .++.
T Consensus 12 ~~~~~~~~p~~~~~Ln--~~Q~~av~~~~~~i~~~~----------~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~ 79 (459)
T 3upu_A 12 SGLVPRGSHMTFDDLT--EGQKNAFNIVMKAIKEKK----------HHVTINGPAGTGATTLTKFIIEALISTGETGIIL 79 (459)
T ss_dssp ---------CCSSCCC--HHHHHHHHHHHHHHHSSS----------CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCccccCCCccccCC--HHHHHHHHHHHHHHhcCC----------CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 3455667778898873 444555555555443321 279999999999999999998865 33 4555
Q ss_pred EeCchhhhh----hhhhhhHHHHHHHHHH----------------HhcCCcEEEEccccccccCCcCCCcccHHHHHHHH
Q 009974 141 RAGSEFEEM----FVGVGARRVRSLFQAA----------------KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 200 (521)
Q Consensus 141 i~~~~~~~~----~~g~~~~~i~~~f~~a----------------~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll 200 (521)
+....-... ..+.....+..++... ......+|+|||+..+. ...+..++
T Consensus 80 ~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~----------~~~~~~l~ 149 (459)
T 3upu_A 80 AAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYD----------RKLFKILL 149 (459)
T ss_dssp EESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCC----------HHHHHHHH
T ss_pred ecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCC----------HHHHHHHH
Confidence 443322111 1111112222333210 00124699999998762 33445555
Q ss_pred HhhhcCccCCceEEEeecCC
Q 009974 201 VEMDGFEQNEGIILMAATNL 220 (521)
Q Consensus 201 ~~l~~~~~~~~vivI~ttn~ 220 (521)
..+. ....+++++-.+.
T Consensus 150 ~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 150 STIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp HHSC---TTCEEEEEECTTS
T ss_pred Hhcc---CCCEEEEECCHHH
Confidence 5443 3556777775544
No 118
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.90 E-value=0.00019 Score=84.10 Aligned_cols=178 Identities=11% Similarity=0.114 Sum_probs=103.0
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEEeCc
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRAGS 144 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~-------~~~~~~i~~~ 144 (521)
.+..-.+++|.++..++|.+.+... ...++-+.|+|+.|+|||+||+.+++.. ...++.++.+
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~ 188 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKL----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG 188 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTT----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhc----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEEC
Confidence 3345567899999887777766421 1234568899999999999999998752 1223344433
Q ss_pred hh-----hhhh------hh----------hhhHHHHHHHHHHHhc--CCcEEEEccccccccCCcCCCcccHHHHHHHHH
Q 009974 145 EF-----EEMF------VG----------VGARRVRSLFQAAKKK--APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 201 (521)
Q Consensus 145 ~~-----~~~~------~g----------~~~~~i~~~f~~a~~~--~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~ 201 (521)
.. .... .+ .....+...+...... ++.+|+||+++.. .
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~----------------~--- 249 (1249)
T 3sfz_A 189 KQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----------------W--- 249 (1249)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH----------------H---
T ss_pred CcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH----------------H---
Confidence 21 0000 00 0112223333333233 3789999998754 1
Q ss_pred hhhcCccCCceEEEeecCCCCCCCccccCCCccceEEecCC-CCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHH
Q 009974 202 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPN-PDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGA 280 (521)
Q Consensus 202 ~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~-P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~ 280 (521)
.++.+ ..+..||.||..+....... .-...+.++. .+.++-.++|..+..............+++.+.|. |-
T Consensus 250 ~~~~~--~~~~~ilvTtR~~~~~~~~~----~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl-PL 322 (1249)
T 3sfz_A 250 VLKAF--DNQCQILLTTRDKSVTDSVM----GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS-PL 322 (1249)
T ss_dssp HHTTT--CSSCEEEEEESSTTTTTTCC----SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC-HH
T ss_pred HHHhh--cCCCEEEEEcCCHHHHHhhc----CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC-HH
Confidence 12222 23346666777654332111 1234677775 88888899998877544333333477899999875 54
Q ss_pred HHHHH
Q 009974 281 DLANL 285 (521)
Q Consensus 281 dl~~l 285 (521)
.|+.+
T Consensus 323 al~~~ 327 (1249)
T 3sfz_A 323 VVSLI 327 (1249)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 45544
No 119
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.88 E-value=2.8e-05 Score=73.84 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=59.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHh--c-------CCCEEEEeCchh--hh----h--hhhh---------------hh
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGE--A-------GVPFFYRAGSEF--EE----M--FVGV---------------GA 155 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~--~-------~~~~~~i~~~~~--~~----~--~~g~---------------~~ 155 (521)
+...-++|+||||+|||++++.++.. . +...++++.... .. . ..+. ..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 34456899999999999999999984 2 456777776541 00 0 0010 01
Q ss_pred ----HHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcc-c--HHHHHHHHHhhhcCccCCceEEEeecCCC
Q 009974 156 ----RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH-T--KKTLHQLLVEMDGFEQNEGIILMAATNLP 221 (521)
Q Consensus 156 ----~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~-~--~~~l~~ll~~l~~~~~~~~vivI~ttn~~ 221 (521)
..+..+........|.+|+|||+..+....-...+. . +..+..++..+..+....++.||.++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~ 174 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVV 174 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC---
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeee
Confidence 112223344445678999999999875432110000 1 11234444444333233455666665543
No 120
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.85 E-value=2.3e-05 Score=79.31 Aligned_cols=76 Identities=22% Similarity=0.194 Sum_probs=48.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhh----hhhh------------hhHHHHHHHHHHHhc
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM----FVGV------------GARRVRSLFQAAKKK 168 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~----~~g~------------~~~~i~~~f~~a~~~ 168 (521)
+...-++|+||||+|||+|+..++..+ +.++++++...-... ..|. ..+.+..+...++..
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSG 138 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcC
Confidence 344569999999999999999998654 567777776432111 1110 111122222233356
Q ss_pred CCcEEEEcccccccc
Q 009974 169 APCIIFIDEIDAVGS 183 (521)
Q Consensus 169 ~p~Il~IDEiD~l~~ 183 (521)
.|.+|+||++..+..
T Consensus 139 ~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 139 ALDIIVIDSVAALVP 153 (349)
T ss_dssp CCSEEEEECGGGCCC
T ss_pred CCCEEEEcChHhhcc
Confidence 789999999999864
No 121
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.83 E-value=5.6e-05 Score=76.48 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=64.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhh----hhh------------hhhHHHHHHHHHHHhc
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM----FVG------------VGARRVRSLFQAAKKK 168 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~----~~g------------~~~~~i~~~f~~a~~~ 168 (521)
+...-++|+||||+|||+|+..++..+ +.++++++....... ..| .....+..+-...+..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSG 138 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhc
Confidence 334568899999999999999998864 667878876542111 001 0112222222223346
Q ss_pred CCcEEEEccccccccCCc--CCCc-----ccHHHHHHHHHhhhcCccCCceEEEee
Q 009974 169 APCIIFIDEIDAVGSTRK--QWEG-----HTKKTLHQLLVEMDGFEQNEGIILMAA 217 (521)
Q Consensus 169 ~p~Il~IDEiD~l~~~~~--~~~~-----~~~~~l~~ll~~l~~~~~~~~vivI~t 217 (521)
.|.+++||.+..+.+... ...+ ...+.+.+++..+..+....++.||.+
T Consensus 139 ~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 139 VVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp CCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred CCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 789999999998865111 0001 123455666666655544555555554
No 122
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.82 E-value=0.00011 Score=70.02 Aligned_cols=112 Identities=24% Similarity=0.286 Sum_probs=61.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHH--Hh--cCCCEEEEeCchhhhhh------hhh------------------------
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIA--GE--AGVPFFYRAGSEFEEMF------VGV------------------------ 153 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA--~~--~~~~~~~i~~~~~~~~~------~g~------------------------ 153 (521)
+...-+.|.||+|+|||||+++++ .. .+...++++........ .+.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLP 107 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC---------
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccccc
Confidence 334568999999999999999998 32 34455555443211100 000
Q ss_pred ------------hhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCC
Q 009974 154 ------------GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 221 (521)
Q Consensus 154 ------------~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~ 221 (521)
.......+........|.+|+|||.-.+..... ........+..++..+. ..+..||.+|+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-d~~~~~~~l~~l~~~l~----~~g~tii~vtH~~ 182 (251)
T 2ehv_A 108 SEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-EERKIREVLLKLNTILL----EMGVTTILTTEAP 182 (251)
T ss_dssp ----------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-SGGGHHHHHHHHHHHHH----HHCCEEEEEECCC
T ss_pred cccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-CHHHHHHHHHHHHHHHH----HCCCeEEEEECCC
Confidence 011222333344457899999999987753211 11223444566666554 2345666677765
Q ss_pred CCC
Q 009974 222 DIL 224 (521)
Q Consensus 222 ~~l 224 (521)
+..
T Consensus 183 ~~~ 185 (251)
T 2ehv_A 183 DPQ 185 (251)
T ss_dssp ---
T ss_pred CCC
Confidence 544
No 123
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.77 E-value=2.7e-05 Score=78.02 Aligned_cols=112 Identities=15% Similarity=0.133 Sum_probs=65.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCchh--hhh---h---hhh----------------
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF--EEM---F---VGV---------------- 153 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~---------~~~~~~i~~~~~--~~~---~---~g~---------------- 153 (521)
.+...-++|+||||+|||+++..++..+ +.++++++...- ... + .|.
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 3444568999999999999999999865 556788876542 110 0 000
Q ss_pred hh---HHHHHHHHHHHh-cCCcEEEEccccccccCCcCCCc---ccHHHHHHHHHhhhcCccCCceEEEeec
Q 009974 154 GA---RRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEG---HTKKTLHQLLVEMDGFEQNEGIILMAAT 218 (521)
Q Consensus 154 ~~---~~i~~~f~~a~~-~~p~Il~IDEiD~l~~~~~~~~~---~~~~~l~~ll~~l~~~~~~~~vivI~tt 218 (521)
.. ..+..+....+. ..+.+|+||.+..+........+ .....+.+++..+..+....++.||.+.
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~n 255 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence 01 122233344445 67889999999988642111001 1123455666665554444455666553
No 124
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.77 E-value=1.9e-05 Score=71.30 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=32.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 147 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 147 (521)
|..|+|+|+||+||||+++.+++.++.+++.++...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~ 40 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLI 40 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHh
Confidence 45799999999999999999999999999887765543
No 125
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.74 E-value=5.4e-05 Score=76.76 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=50.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhh----hhhh-----------hhHHHHHHHHH-HHh
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM----FVGV-----------GARRVRSLFQA-AKK 167 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~----~~g~-----------~~~~i~~~f~~-a~~ 167 (521)
.+....++|+||||+|||++|..++..+ +.++++++...-... ..|. ....+..++.. .+.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 3445679999999999999999998754 668888877432111 0110 11223333332 234
Q ss_pred cCCcEEEEcccccccc
Q 009974 168 KAPCIIFIDEIDAVGS 183 (521)
Q Consensus 168 ~~p~Il~IDEiD~l~~ 183 (521)
..+.+|+||.+..+..
T Consensus 140 ~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 140 GAVDVIVVDSVAALTP 155 (356)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred cCCCEEEEcCHHHhcc
Confidence 6788999999999864
No 126
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.72 E-value=5.5e-05 Score=91.02 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=55.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhhhhh----------------hhHHHHHHHHHHH
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGV----------------GARRVRSLFQAAK 166 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~g~----------------~~~~i~~~f~~a~ 166 (521)
|.+.+.+++|+||||||||+||.+++.+. |.+.++++..+..+..... ++...+-.....+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 35566789999999999999999997654 7888888887654332210 1122222333344
Q ss_pred hcCCcEEEEccccccccC
Q 009974 167 KKAPCIIFIDEIDAVGST 184 (521)
Q Consensus 167 ~~~p~Il~IDEiD~l~~~ 184 (521)
..+|++|+||++..+.+.
T Consensus 1157 ~~~~dlvVIDsl~~L~~~ 1174 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTPK 1174 (2050)
T ss_dssp HTCCSEEEESCGGGCCCH
T ss_pred hCCCCEEEECCccccccc
Confidence 577999999999999543
No 127
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.67 E-value=8.8e-05 Score=74.89 Aligned_cols=112 Identities=15% Similarity=0.151 Sum_probs=63.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCchh-h-hh---h---hhh----------------h
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF-E-EM---F---VGV----------------G 154 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~---------~~~~~~i~~~~~-~-~~---~---~g~----------------~ 154 (521)
+...-++|+||||+|||+++..+|... +.++++++...- . .. + .|. .
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCH
Confidence 334458899999999999999999863 456777776542 1 10 0 000 0
Q ss_pred h---HHHHHHHHHHHh--cCCcEEEEccccccccCCcCCCcc---cHHHHHHHHHhhhcCccCCceEEEeecC
Q 009974 155 A---RRVRSLFQAAKK--KAPCIIFIDEIDAVGSTRKQWEGH---TKKTLHQLLVEMDGFEQNEGIILMAATN 219 (521)
Q Consensus 155 ~---~~i~~~f~~a~~--~~p~Il~IDEiD~l~~~~~~~~~~---~~~~l~~ll~~l~~~~~~~~vivI~ttn 219 (521)
. ..+..+...... ..+.+|+||.+..+....-...+. ....+.+++..+..+....++.||.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 1 112222334444 678899999999986431110011 1223555555555544445556665544
No 128
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.61 E-value=0.00054 Score=64.41 Aligned_cols=162 Identities=20% Similarity=0.288 Sum_probs=83.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCch--------hhhhhh----------hh--hhHHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE--------FEEMFV----------GV--GARRVRSLFQAAKK 167 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~--------~~~~~~----------g~--~~~~i~~~f~~a~~ 167 (521)
..+++.|+||+|||+++-.+|..+ |..++.++... +..... +. .+..+..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~---- 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK---- 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH----
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh----
Confidence 369999999999999999998764 66666554421 111100 00 1122233222
Q ss_pred cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCC------------------CCCCcccc
Q 009974 168 KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP------------------DILDPALT 229 (521)
Q Consensus 168 ~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~------------------~~ld~al~ 229 (521)
..|.+++|||+-........ ....-+.+..+ + ..++=+++|+|.. +.++..+.
T Consensus 83 ~~pdlvIVDElG~~~~~~~r-~~~~~qDV~~~---l-----~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~ 153 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSR-HTKRWQDIQEL---L-----AAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVL 153 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCS-SSBHHHHHHHH---H-----HTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHH
T ss_pred cCCCEEEEeCCCCCCcccch-hHHHHHHHHHH---H-----cCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHH
Confidence 46889999998764222111 11111112111 1 2344566677622 23444444
Q ss_pred CCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcccHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 009974 230 RPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAA 294 (521)
Q Consensus 230 r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~l~~la~~~~g~s~~dl~~lv~~A~~~a~ 294 (521)
+ +.+.+..++.|..+ +++.....+....+..-..+.. -|+...|..+-+-|...++
T Consensus 154 ~--~a~~v~lvD~~p~~----l~~rl~~g~vy~~~~~~~a~~~---~f~~~nl~~lrelal~~~a 209 (228)
T 2r8r_A 154 Q--EAFDLVLIDLPPRE----LLERLRDGKVYVPEQARAAIDA---FFTQTNLTALREMAMQTAA 209 (228)
T ss_dssp H--TCSEEEEBCCCHHH----HHHHHHTTCCCCTTCCHHHHHH---HCCHHHHHHHHHHHHHHHH
T ss_pred h--hCCeEEEecCCHHH----HHHHHHCCCccChhHHHHHHHh---hhchhhHHHHHHHHHHHHH
Confidence 4 45667777777655 3333333333222222222222 2677888777765665554
No 129
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.61 E-value=0.00021 Score=70.17 Aligned_cols=60 Identities=28% Similarity=0.355 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009974 83 DDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 146 (521)
Q Consensus 83 ~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 146 (521)
++....+.+++..+... ......|..++|+||||+||||+++.++.+++..++.+++..+
T Consensus 10 ~~~~~~~~~~~~~~l~~----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQG----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred HHHHHHHHHHHHHHhcc----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 44555555555543221 1233456789999999999999999999988656677777554
No 130
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.61 E-value=0.00019 Score=70.89 Aligned_cols=106 Identities=13% Similarity=0.241 Sum_probs=59.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeCchhhh-hh---hhh-----------hhHHH-HHHHHH---HHh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSEFEE-MF---VGV-----------GARRV-RSLFQA---AKK 167 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~-----~~~~~~i~~~~~~~-~~---~g~-----------~~~~i-~~~f~~---a~~ 167 (521)
-++++||||+|||+|+-.++..+ +..+++++...-.. .+ .|. ....+ -.+.+. .+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 57899999999999988876543 56788887754211 10 111 11122 222222 245
Q ss_pred cCCcEEEEccccccccCCcC---CC----c--ccHHHHHHHHHhhhcCccCCceEEEee
Q 009974 168 KAPCIIFIDEIDAVGSTRKQ---WE----G--HTKKTLHQLLVEMDGFEQNEGIILMAA 217 (521)
Q Consensus 168 ~~p~Il~IDEiD~l~~~~~~---~~----~--~~~~~l~~ll~~l~~~~~~~~vivI~t 217 (521)
.+|.+|+||-+..+.+...- .. + ...+.+++.|..+.++....++.+|.+
T Consensus 110 ~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~t 168 (333)
T 3io5_A 110 GEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAI 168 (333)
T ss_dssp TCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 67999999999999753211 00 0 123445555555544444455555554
No 131
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.59 E-value=0.0004 Score=65.78 Aligned_cols=38 Identities=34% Similarity=0.463 Sum_probs=28.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEEeCc
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAGS 144 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~---~~~~~~~i~~~ 144 (521)
.+....++|+||||+|||+++..++.. .+.++++++..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 334456899999999999999888764 35677776654
No 132
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.59 E-value=0.00058 Score=70.93 Aligned_cols=149 Identities=21% Similarity=0.262 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCCcEEEEccccccccCCcCCCcc--cHHHHHHHHHhhhcCc--------cCCceEEEeec----CCCCC
Q 009974 158 VRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH--TKKTLHQLLVEMDGFE--------QNEGIILMAAT----NLPDI 223 (521)
Q Consensus 158 i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~--~~~~l~~ll~~l~~~~--------~~~~vivI~tt----n~~~~ 223 (521)
.+.....+..+ .|+|+||||.++...+...+. ...+...||..+++.. ...+|++|+|. +.|..
T Consensus 241 ~~~ai~~ae~~--~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~d 318 (444)
T 1g41_A 241 KQKAIDAVEQN--GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSD 318 (444)
T ss_dssp HHHHHHHHHHH--CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGG
T ss_pred HHHHHHHhccC--CeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhh
Confidence 34445555333 399999999998764422222 2346678888888632 35678899887 23444
Q ss_pred CCccccCCCccceEEecCCCCHHHHHHHHH---H-----Hh---ccCCCC---CcccHHHHHh-------cCCCCCHHHH
Q 009974 224 LDPALTRPGRFDRHIVVPNPDVRGRQEILE---L-----YL---QDKPLA---DDVDVKAIAR-------GTPGFNGADL 282 (521)
Q Consensus 224 ld~al~r~gRf~~~i~~~~P~~~~r~~il~---~-----~l---~~~~~~---~~~~l~~la~-------~~~g~s~~dl 282 (521)
+-|.|+. ||..++.++.++.++..+|+. . +. ...+.. .+..+..+++ .+...-.+.|
T Consensus 319 lipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L 396 (444)
T 1g41_A 319 LIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRL 396 (444)
T ss_dssp SCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHH
T ss_pred cchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHH
Confidence 5577876 999999999999999999983 1 11 111111 2233555554 3444556666
Q ss_pred HHHHHHHHHHHHHhC----C--CccCHHHHHHHH
Q 009974 283 ANLVNIAAIKAAVDG----G--EKLTATELEFAK 310 (521)
Q Consensus 283 ~~lv~~A~~~a~~~~----~--~~it~~~~~~a~ 310 (521)
++++......+..+- . -.||.+.+...+
T Consensus 397 ~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l 430 (444)
T 1g41_A 397 HTVMERLMDKISFSASDMNGQTVNIDAAYVADAL 430 (444)
T ss_dssp HHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhc
Confidence 666665554443331 1 136666665543
No 133
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.56 E-value=4.3e-05 Score=69.53 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=29.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
++.|+|+|||||||||+++.+|+.++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45799999999999999999999999998864
No 134
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.56 E-value=9.3e-05 Score=69.50 Aligned_cols=26 Identities=31% Similarity=0.245 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
...-+.|.||+|+|||||++.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34468899999999999999999843
No 135
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.53 E-value=0.00024 Score=68.29 Aligned_cols=40 Identities=33% Similarity=0.439 Sum_probs=34.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 146 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 146 (521)
...|..++|.||||+||||+++.++..++.+++.++...+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4456789999999999999999999999877777777665
No 136
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.52 E-value=0.00017 Score=74.13 Aligned_cols=112 Identities=16% Similarity=0.164 Sum_probs=61.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCchh-hh-------hhhhh------------------
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF-EE-------MFVGV------------------ 153 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~---------~~~~~~i~~~~~-~~-------~~~g~------------------ 153 (521)
...-+.|+||||+|||+|++.++-.. +...++++.... .. ...|.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCChH
Confidence 34558899999999999999776432 234777776542 00 00010
Q ss_pred -hhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCc---ccHHHHHHHHHhhhcCccCCceEEEeecCC
Q 009974 154 -GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG---HTKKTLHQLLVEMDGFEQNEGIILMAATNL 220 (521)
Q Consensus 154 -~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~---~~~~~l~~ll~~l~~~~~~~~vivI~ttn~ 220 (521)
....+..+........|.+|+||++-.+....-...+ ..++.+..++..+..+....++.||.++..
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 0111222333344467899999999887643221111 123334555555555444445666666554
No 137
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.49 E-value=0.00019 Score=72.50 Aligned_cols=37 Identities=22% Similarity=0.173 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEeCch
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSE 145 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~---------~~~~~~i~~~~ 145 (521)
...-+.|+||||+|||+|++.++... +...++++..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 33458899999999999999999876 23557776643
No 138
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.47 E-value=0.0013 Score=70.60 Aligned_cols=170 Identities=13% Similarity=0.135 Sum_probs=92.7
Q ss_pred cCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHH----hcCCC---EEEEeCch-----hh
Q 009974 80 KGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAG----EAGVP---FFYRAGSE-----FE 147 (521)
Q Consensus 80 ~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~----~~~~~---~~~i~~~~-----~~ 147 (521)
+|.++.+++|.+.+..- +...++.+.|+|++|+|||+||+.+++ ..... .+.++.+. ..
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhcc---------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 49999888887776421 112245789999999999999999996 33222 12333322 11
Q ss_pred h---hh---hhhh-------------hHHHHHHHHHHHhcC-CcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCc
Q 009974 148 E---MF---VGVG-------------ARRVRSLFQAAKKKA-PCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 207 (521)
Q Consensus 148 ~---~~---~g~~-------------~~~i~~~f~~a~~~~-p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~ 207 (521)
. .. .+.. ...+...+...-..+ +.+|+||+++.. ... .+. .
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~-----------~~~--~~~-~----- 262 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE-----------ETI--RWA-Q----- 262 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH-----------HHH--HHH-H-----
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc-----------hhh--ccc-c-----
Confidence 1 00 0100 111233333333443 789999998764 111 111 1
Q ss_pred cCCceEEEeecCCCCCCCccccCCCccceEEecCCCCHHHHHHHHHHHhccCCCCCcc--cHHHHHhcCCCCCHHHHH
Q 009974 208 QNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDV--DVKAIARGTPGFNGADLA 283 (521)
Q Consensus 208 ~~~~vivI~ttn~~~~ld~al~r~gRf~~~i~~~~P~~~~r~~il~~~l~~~~~~~~~--~l~~la~~~~g~s~~dl~ 283 (521)
..+..||.||....... .. +.....+.++..+.++-.++|..+........+. ....+++.+.|. |-.|+
T Consensus 263 -~~gs~ilvTTR~~~v~~-~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl-PLAl~ 334 (549)
T 2a5y_B 263 -ELRLRCLVTTRDVEISN-AA---SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN-PATLM 334 (549)
T ss_dssp -HTTCEEEEEESBGGGGG-GC---CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC-HHHHH
T ss_pred -cCCCEEEEEcCCHHHHH-Hc---CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC-hHHHH
Confidence 13445666776533211 11 1133578999999999999998885433211111 245566667664 43333
No 139
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.46 E-value=9.3e-05 Score=67.55 Aligned_cols=33 Identities=39% Similarity=0.638 Sum_probs=29.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
..|.-|+|.|+||+||||+++.++..++.+++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 346679999999999999999999999988765
No 140
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.46 E-value=7.1e-05 Score=69.20 Aligned_cols=33 Identities=45% Similarity=0.539 Sum_probs=29.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
.++.++|.||||+||||+++.+|+.++.+++..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 345799999999999999999999999998754
No 141
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.44 E-value=0.00048 Score=67.14 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHh
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~ 133 (521)
...-++|+||||+|||+|++.++..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999864
No 142
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.43 E-value=0.00069 Score=64.22 Aligned_cols=38 Identities=32% Similarity=0.312 Sum_probs=28.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHh----cCCCEEEEeCc
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGE----AGVPFFYRAGS 144 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~----~~~~~~~i~~~ 144 (521)
.++..-++++|+||+|||++|..+|.. .+.++++++..
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 344456899999999999999887643 36778777653
No 143
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.42 E-value=0.00012 Score=73.09 Aligned_cols=110 Identities=12% Similarity=0.170 Sum_probs=62.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---------------C----CCEEEEeCchh--hhh---h---hhh-------
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEA---------------G----VPFFYRAGSEF--EEM---F---VGV------- 153 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~---------------~----~~~~~i~~~~~--~~~---~---~g~------- 153 (521)
+...-++|+||||+|||++|..+|... | .++++++...- ... + .|.
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLD 175 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhc
Confidence 344568999999999999999998753 2 56777776542 110 0 000
Q ss_pred --------hhH----HHHHHHHHHHh-cCCcEEEEccccccccCCcCCCc---ccHHHHHHHHHhhhcCccCCceEEEee
Q 009974 154 --------GAR----RVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEG---HTKKTLHQLLVEMDGFEQNEGIILMAA 217 (521)
Q Consensus 154 --------~~~----~i~~~f~~a~~-~~p~Il~IDEiD~l~~~~~~~~~---~~~~~l~~ll~~l~~~~~~~~vivI~t 217 (521)
... .+..+....+. ..+.+|+||.+..+........+ .....+.+++..+..+....++.||.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~ 255 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVT 255 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 001 12223333444 56789999999988542111001 112345566665555444455556554
No 144
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.39 E-value=0.00062 Score=71.34 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=30.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCc
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGS 144 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~----~~~~~~i~~~ 144 (521)
|..+..-++|.|+||+|||+|+..+|... |.++++++..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 44445568999999999999999998743 5688877653
No 145
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.39 E-value=0.00027 Score=66.65 Aligned_cols=69 Identities=16% Similarity=0.111 Sum_probs=43.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCch-------hhhhhhhhh-----hHHHHHHHHHHHh----cCCcE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE-------FEEMFVGVG-----ARRVRSLFQAAKK----KAPCI 172 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~-------~~~~~~g~~-----~~~i~~~f~~a~~----~~p~I 172 (521)
-++++||+|+||||++..++.++ +..++.++... +.+. .|.. .....++++.+.. ..+.+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 57788999999999998888765 55666664322 1110 1110 0112345655554 34789
Q ss_pred EEEcccccc
Q 009974 173 IFIDEIDAV 181 (521)
Q Consensus 173 l~IDEiD~l 181 (521)
|+|||+..+
T Consensus 93 ViIDEaQ~l 101 (223)
T 2b8t_A 93 IGIDEVQFF 101 (223)
T ss_dssp EEECSGGGS
T ss_pred EEEecCccC
Confidence 999999876
No 146
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.37 E-value=0.00025 Score=76.49 Aligned_cols=97 Identities=25% Similarity=0.341 Sum_probs=55.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhhh----hhhhhHHHHHHHHHH---------HhcCCcEEE
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF----VGVGARRVRSLFQAA---------KKKAPCIIF 174 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~----~g~~~~~i~~~f~~a---------~~~~p~Il~ 174 (521)
+.++++||||||||+++.+++..+ +.+++.+..+.-.... .+.....+..++... ......+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 468999999999999999998744 5666655443221111 111112222222110 011346999
Q ss_pred EccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCC
Q 009974 175 IDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 220 (521)
Q Consensus 175 IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~ 220 (521)
|||+..+ ....+..|+..+ .....+++++-.+.
T Consensus 285 IDEasml----------~~~~~~~Ll~~~---~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 285 VDEVSMM----------GDALMLSLLAAV---PPGARVLLVGDTDQ 317 (574)
T ss_dssp ECCGGGC----------CHHHHHHHHTTS---CTTCEEEEEECTTS
T ss_pred EcCccCC----------CHHHHHHHHHhC---cCCCEEEEEecccc
Confidence 9999877 233455555443 34566777776554
No 147
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.36 E-value=0.0001 Score=66.95 Aligned_cols=30 Identities=30% Similarity=0.586 Sum_probs=27.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
.|+|+|+||+||||+++.|++.++.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 599999999999999999999999998753
No 148
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.32 E-value=0.0001 Score=67.51 Aligned_cols=30 Identities=17% Similarity=-0.046 Sum_probs=22.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYR 141 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~---~~~~~~i 141 (521)
-++++||+|+|||+++..++..+ +.+++.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 57899999999999996666543 5555444
No 149
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.31 E-value=0.00014 Score=65.90 Aligned_cols=32 Identities=44% Similarity=0.734 Sum_probs=28.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
++.|+|+|+||+||||+++.++..++.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 45799999999999999999999999887753
No 150
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.31 E-value=0.00015 Score=64.83 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=27.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 142 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~ 142 (521)
-|+|.||||+||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5899999999999999999999998887644
No 151
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.31 E-value=0.0019 Score=66.89 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=49.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhh-------h------------h-hhhhHHHHHHHHHH
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-------F------------V-GVGARRVRSLFQAA 165 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~-------~------------~-g~~~~~i~~~f~~a 165 (521)
.|.-++++||+|+||||++..+|..+ |..+..+++..+... + . ......++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 47789999999999999999998754 566666665433110 0 0 11223445667777
Q ss_pred HhcCCcEEEEcccccc
Q 009974 166 KKKAPCIIFIDEIDAV 181 (521)
Q Consensus 166 ~~~~p~Il~IDEiD~l 181 (521)
....+.+++||....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7766789999987544
No 152
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.30 E-value=0.00018 Score=65.60 Aligned_cols=39 Identities=33% Similarity=0.494 Sum_probs=32.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 146 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 146 (521)
..+..+.|.||||+||||+++.+++..+.+.+.++..++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 344578999999999999999999988778787776554
No 153
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.30 E-value=0.00013 Score=66.55 Aligned_cols=31 Identities=48% Similarity=0.707 Sum_probs=27.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh-cCCCEEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGE-AGVPFFY 140 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~-~~~~~~~ 140 (521)
+..|+|+|+|||||||+++.++.. +|.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 457999999999999999999999 6877765
No 154
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.29 E-value=0.00017 Score=66.62 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=29.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
..|..|+|.|+||+||||+++.|+..++.+++..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3456799999999999999999999999887654
No 155
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.28 E-value=0.00015 Score=64.90 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=28.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
.+++|.|+|||||||+++.||..++.|++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4799999999999999999999999998763
No 156
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.27 E-value=0.00017 Score=64.62 Aligned_cols=31 Identities=26% Similarity=0.597 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
+..+.|+||||+||||+++.+|..++.+++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 3469999999999999999999999876653
No 157
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.26 E-value=0.00016 Score=65.10 Aligned_cols=29 Identities=34% Similarity=0.587 Sum_probs=26.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
.++|.||||+||||+++.||+.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999988775
No 158
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.25 E-value=0.00056 Score=66.01 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=31.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh---cCCCEEEEeCchhh
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAGSEFE 147 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~---~~~~~~~i~~~~~~ 147 (521)
+.-|+|+|+||+||||+++.++.. .|.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 446999999999999999999997 78888877765544
No 159
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.25 E-value=0.0011 Score=69.25 Aligned_cols=39 Identities=26% Similarity=0.142 Sum_probs=30.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCc
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGS 144 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~----~~~~~~i~~~ 144 (521)
|..+..-++|.|+||+|||+++..+|... +.++++++..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34444568999999999999999988643 5688887763
No 160
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.24 E-value=0.00017 Score=65.55 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=29.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
..|..|+|.|+||+||||+++.++..++.+++..
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 3456799999999999999999999998776653
No 161
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.24 E-value=0.0016 Score=61.91 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=28.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 144 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~ 144 (521)
.++++||+|+|||.++.+++...+.+.+.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 599999999999999999999888777776654
No 162
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.21 E-value=0.00063 Score=66.80 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=28.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeC
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAG 143 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~----~~~~~~i~~ 143 (521)
+.....-++|.||||+|||+|++.++... |.++++++.
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 33444568999999999999999998754 446666543
No 163
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.19 E-value=0.00032 Score=69.73 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=31.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCch
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 145 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~ 145 (521)
++.++|+||+|+|||++++.+|++++.+++..+...
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 457999999999999999999999998888776543
No 164
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.19 E-value=0.00018 Score=64.72 Aligned_cols=30 Identities=33% Similarity=0.499 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH-hcCCCEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAG-EAGVPFF 139 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~-~~~~~~~ 139 (521)
|.-|+|.||||+||||+++.+++ ..+.+++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 45789999999999999999998 4554433
No 165
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.19 E-value=0.0018 Score=64.08 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=30.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCch
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 145 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~ 145 (521)
...|.-+++.||+|+||||++..+|..+ +..+..+++..
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 3456779999999999999999999865 55666665543
No 166
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.17 E-value=0.00027 Score=65.29 Aligned_cols=31 Identities=39% Similarity=0.739 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
+.-|+|.|+||+||||+++.|++.++.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4579999999999999999999999887765
No 167
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.17 E-value=0.00019 Score=65.37 Aligned_cols=31 Identities=26% Similarity=0.462 Sum_probs=27.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
|.-|+|.|+||+||||+++.++..++.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 4579999999999999999999999887654
No 168
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.15 E-value=0.00023 Score=65.10 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
+.-|+|.|+||+||||+++.+++.++.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45799999999999999999999999876654
No 169
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.13 E-value=0.00027 Score=68.10 Aligned_cols=32 Identities=34% Similarity=0.332 Sum_probs=28.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 143 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~~ 143 (521)
-++|.|||||||||+|+.||+.++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 58899999999999999999999998887654
No 170
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.13 E-value=0.00024 Score=63.57 Aligned_cols=30 Identities=30% Similarity=0.515 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
+.|+|.|+||+||||+++.++..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999988765
No 171
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.12 E-value=0.00034 Score=63.22 Aligned_cols=37 Identities=30% Similarity=0.473 Sum_probs=31.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCch
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 145 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~ 145 (521)
.+..+.|.|++|+||||+++.++..+ |.|++.++...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 34568899999999999999999987 89998877543
No 172
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.11 E-value=0.0024 Score=63.40 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=29.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeC
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAG 143 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~ 143 (521)
|..+..-++|.|+||+|||+++..+|... +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 34445569999999999999999998654 467777765
No 173
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.11 E-value=0.00022 Score=63.53 Aligned_cols=29 Identities=41% Similarity=0.639 Sum_probs=25.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
-|+|+||||+||||+++.+ ...|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8888887764
No 174
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.10 E-value=0.00024 Score=64.18 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFF 139 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~ 139 (521)
|.-|+|.|+||+||||+++.+++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 457999999999999999999999999887
No 175
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.10 E-value=0.00034 Score=65.51 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
+..|+|.|+||+||||+++.||..++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 45799999999999999999999999876653
No 176
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.08 E-value=0.001 Score=67.26 Aligned_cols=95 Identities=19% Similarity=0.247 Sum_probs=56.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeC-chhh---------hhhhhhhhHHHHHHHHHHHhcCCcEEEEcc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAG-SEFE---------EMFVGVGARRVRSLFQAAKKKAPCIIFIDE 177 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~----~~~~~~i~~-~~~~---------~~~~g~~~~~i~~~f~~a~~~~p~Il~IDE 177 (521)
.+++.||+|+||||+.+++++.. +..++.+.. .++. ....+.....+...+..+-...|.+|++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 58899999999999999998865 233332211 1110 000111112344567777778999999999
Q ss_pred ccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCC
Q 009974 178 IDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 223 (521)
Q Consensus 178 iD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ 223 (521)
+-. ..+...++.... .+..|+.++...+.
T Consensus 205 p~d------------~e~~~~~~~~~~-----~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 205 MRD------------LETIRLALTAAE-----TGHLVFGTLHTTSA 233 (356)
T ss_dssp CCS------------HHHHHHHHHHHH-----TTCEEEEEESCSSH
T ss_pred CCC------------HHHHHHHHHHHh-----cCCEEEEEEccChH
Confidence 741 233333343322 24467778776554
No 177
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.08 E-value=0.003 Score=58.02 Aligned_cols=115 Identities=14% Similarity=0.081 Sum_probs=64.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCch---------hhhhhh-----------------hhhhHHHHHHH
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE---------FEEMFV-----------------GVGARRVRSLF 162 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~---------~~~~~~-----------------g~~~~~i~~~f 162 (521)
.|++|+++|.||||+|-.+|-++ |.++..+.... +...+. ..........+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 68999999999999999998765 77777663221 222220 00123345555
Q ss_pred HHHHh----cCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCCCccccCCCccceEE
Q 009974 163 QAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHI 238 (521)
Q Consensus 163 ~~a~~----~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~ld~al~r~gRf~~~i 238 (521)
..++. ....+|+|||+.....-.- -. ...++..+.. ...+.-||.|+|.+ ++.|.. .-|.+-
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~----l~---~~ev~~~l~~--Rp~~~~vIlTGr~a---p~~l~e--~AD~VT 175 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDY----LP---LEEVISALNA--RPGHQTVIITGRGC---HRDILD--LADTVS 175 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTS----SC---HHHHHHHHHT--SCTTCEEEEECSSC---CHHHHH--HCSEEE
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCC----CC---HHHHHHHHHh--CcCCCEEEEECCCC---cHHHHH--hCccee
Confidence 55544 4468999999966422110 01 1234444443 23445666677764 334443 444444
Q ss_pred ec
Q 009974 239 VV 240 (521)
Q Consensus 239 ~~ 240 (521)
++
T Consensus 176 em 177 (196)
T 1g5t_A 176 EL 177 (196)
T ss_dssp EC
T ss_pred ee
Confidence 43
No 178
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.07 E-value=0.00028 Score=63.98 Aligned_cols=30 Identities=30% Similarity=0.528 Sum_probs=26.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
..++|.|+||+||||+++.+++.++.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 468999999999999999999999876654
No 179
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.07 E-value=0.00028 Score=66.51 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
.|..|+|.||||+||||+++.|+..++.+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 345799999999999999999999998876653
No 180
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.07 E-value=0.00024 Score=66.55 Aligned_cols=31 Identities=32% Similarity=0.563 Sum_probs=27.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
..|+|.|+||+||||+++.||..++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999877654
No 181
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.06 E-value=0.00028 Score=64.63 Aligned_cols=32 Identities=25% Similarity=0.432 Sum_probs=27.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
|.-|+|.|+||+||||+++.+++.++.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 34699999999999999999999998766543
No 182
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.05 E-value=0.0019 Score=68.32 Aligned_cols=75 Identities=20% Similarity=0.361 Sum_probs=51.0
Q ss_pred Cc-EEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCC--CCCccccCCCccceEEecCCCCHH
Q 009974 170 PC-IIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD--ILDPALTRPGRFDRHIVVPNPDVR 246 (521)
Q Consensus 170 p~-Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~--~ld~al~r~gRf~~~i~~~~P~~~ 246 (521)
|. +|+|||+..+... ....+..++..+-......++.+|.+|.+|. .++..++. .|..+|.+...+..
T Consensus 297 P~ivlvIDE~~~ll~~-------~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~ 367 (512)
T 2ius_A 297 PYIVVLVDEFADLMMT-------VGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKI 367 (512)
T ss_dssp CEEEEEEETHHHHHHH-------HHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHH
T ss_pred CcEEEEEeCHHHHHhh-------hhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHH
Confidence 54 8899999877431 1112333333333223455788889999987 57777766 68888899999998
Q ss_pred HHHHHHH
Q 009974 247 GRQEILE 253 (521)
Q Consensus 247 ~r~~il~ 253 (521)
+...++.
T Consensus 368 dsr~ilg 374 (512)
T 2ius_A 368 DSRTILD 374 (512)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 8888774
No 183
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.04 E-value=0.00035 Score=64.39 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
.+.-|+|.|+||+||||+++.+++.++.+++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 345799999999999999999999998876654
No 184
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.04 E-value=0.00031 Score=67.14 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
.|..|+|.||||+||||+++.|++.++.+++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 466799999999999999999999998776653
No 185
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.03 E-value=0.00033 Score=65.31 Aligned_cols=30 Identities=30% Similarity=0.599 Sum_probs=26.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
.|+|.||||+||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999998887754
No 186
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.03 E-value=0.0021 Score=68.50 Aligned_cols=74 Identities=18% Similarity=0.298 Sum_probs=51.7
Q ss_pred cEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCC--CCCccccCCCccceEEecCCCCHHHH
Q 009974 171 CIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD--ILDPALTRPGRFDRHIVVPNPDVRGR 248 (521)
Q Consensus 171 ~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~--~ld~al~r~gRf~~~i~~~~P~~~~r 248 (521)
-+|+|||++.+..... . .+...+..+-......+|.+|.+|.+|. .++..++. -|..+|.+...+..+.
T Consensus 345 ivvVIDE~~~L~~~~~------~-~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Ds 415 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG------K-KVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDS 415 (574)
T ss_dssp EEEEESCCTTHHHHTC------H-HHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHH
T ss_pred EEEEEeCHHHHhhhhh------H-HHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHH
Confidence 4899999998854211 1 1223333333334567899999999997 78877776 6888889999998888
Q ss_pred HHHHH
Q 009974 249 QEILE 253 (521)
Q Consensus 249 ~~il~ 253 (521)
..|+.
T Consensus 416 r~ILd 420 (574)
T 2iut_A 416 RTILD 420 (574)
T ss_dssp HHHHS
T ss_pred HHhcC
Confidence 77764
No 187
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.01 E-value=0.0026 Score=65.85 Aligned_cols=73 Identities=26% Similarity=0.233 Sum_probs=46.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhh----------hhhh----------hhHHHHHHHHHH
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM----------FVGV----------GARRVRSLFQAA 165 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~----------~~g~----------~~~~i~~~f~~a 165 (521)
.|.-+++.||+|+||||++..+|..+ +..+..+++..+... ..+. ........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46789999999999999999998755 566665554422110 0000 112233445555
Q ss_pred HhcCCcEEEEcccccc
Q 009974 166 KKKAPCIIFIDEIDAV 181 (521)
Q Consensus 166 ~~~~p~Il~IDEiD~l 181 (521)
....+.+++||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5556789999987544
No 188
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.01 E-value=0.00036 Score=62.11 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
.|+|.|+||+||||+++.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48999999999999999999999988875
No 189
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.00 E-value=0.00094 Score=61.28 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~ 134 (521)
-+.|.||+|+||||+++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999865
No 190
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.00 E-value=0.00036 Score=65.03 Aligned_cols=30 Identities=33% Similarity=0.546 Sum_probs=26.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
.|+|.||||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999999887754
No 191
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.99 E-value=0.00038 Score=63.21 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=23.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~ 135 (521)
.-|+|.||||+||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 192
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.98 E-value=0.00046 Score=64.82 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=31.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
+.|+-|+|.||||+||+|.|+.|++.++.+.+ +..++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdllR 65 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDLLR 65 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHHHH
Confidence 44667899999999999999999999987654 4445443
No 193
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.98 E-value=0.00053 Score=64.94 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
+..|+|.|+||+||||+++.||+.++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 35799999999999999999999999876653
No 194
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.95 E-value=0.00057 Score=63.04 Aligned_cols=32 Identities=31% Similarity=0.598 Sum_probs=26.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
.+.-+.|.||||+||||+++.+++.+|..++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 34579999999999999999999998765543
No 195
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.94 E-value=0.00042 Score=64.98 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=27.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
.|..|+|.||||+||||+++.||..++.+++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 34579999999999999999999999875543
No 196
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.92 E-value=0.00061 Score=61.15 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=26.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
..+.|.||||+||||+++.++..+|.+++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 468999999999999999999988876554
No 197
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.87 E-value=0.0074 Score=59.34 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCch
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSE 145 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~----~~~~~~i~~~~ 145 (521)
.+..++|.||+|+||||++..+|..+ |..+..+++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 46689999999999999999998744 55666666543
No 198
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.87 E-value=0.00095 Score=61.05 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
+.|+|+||+|+||||+++.|..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 359999999999999999998765
No 199
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.83 E-value=0.0028 Score=75.62 Aligned_cols=111 Identities=17% Similarity=0.245 Sum_probs=73.9
Q ss_pred CCCce--EEEEcCCCCcHHHHHHHHHHh---cCCCEEEEeCchhhh----------------hhhhhhhHHHHHHHHHHH
Q 009974 108 KLPKG--ILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAGSEFEE----------------MFVGVGARRVRSLFQAAK 166 (521)
Q Consensus 108 ~~p~~--vLL~GppGtGKT~la~alA~~---~~~~~~~i~~~~~~~----------------~~~g~~~~~i~~~f~~a~ 166 (521)
-.|+| +.+|||+|||||++|-.++.+ .|....+++...-.. .+...+++.+..+...++
T Consensus 1427 G~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~ 1506 (1706)
T 3cmw_A 1427 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1506 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHH
Confidence 44544 999999999999999888654 367777777642111 123334677777888889
Q ss_pred hcCCcEEEEccccccccCCcCCC-------cccHHHHHHHHHhhhcCccCCceEEEeec
Q 009974 167 KKAPCIIFIDEIDAVGSTRKQWE-------GHTKKTLHQLLVEMDGFEQNEGIILMAAT 218 (521)
Q Consensus 167 ~~~p~Il~IDEiD~l~~~~~~~~-------~~~~~~l~~ll~~l~~~~~~~~vivI~tt 218 (521)
.++|++|+||.+.++.+..+... +-..+.+.+.|..+.+.-.+.++.+|.+.
T Consensus 1507 s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~ 1565 (1706)
T 3cmw_A 1507 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1565 (1706)
T ss_dssp HTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCcEEEEee
Confidence 99999999999999987654221 11234455556666555455566666553
No 200
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.83 E-value=0.00069 Score=63.07 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 147 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 147 (521)
.|+|.||||+||+|.|+.||+.++.+.+ +..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHH
Confidence 3789999999999999999999988765 444443
No 201
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.81 E-value=0.00062 Score=63.48 Aligned_cols=30 Identities=37% Similarity=0.500 Sum_probs=26.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
.|+|.||||+||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999999887654
No 202
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.80 E-value=0.0013 Score=59.12 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=17.6
Q ss_pred CceEEEEcCCCCcHHHHHHH
Q 009974 110 PKGILLTGAPGTGKTLLAKA 129 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~a 129 (521)
+.-+.|.||+|+||||++++
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 34588999999999999995
No 203
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.79 E-value=0.0012 Score=63.90 Aligned_cols=69 Identities=23% Similarity=0.366 Sum_probs=41.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCc-hh--------h-hhhhhhhhHHHHHHHHHHHhcCCcEEEEc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGS-EF--------E-EMFVGVGARRVRSLFQAAKKKAPCIIFID 176 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~----~~~~~~i~~~-~~--------~-~~~~g~~~~~i~~~f~~a~~~~p~Il~ID 176 (521)
..++|.||+|+||||+++++++.. ...++..... .+ . ....|.....++..+..+-...|.+|++|
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illlD 105 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVG 105 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEES
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeC
Confidence 358899999999999999999854 2222221100 00 0 00011111234556666666689999999
Q ss_pred ccc
Q 009974 177 EID 179 (521)
Q Consensus 177 EiD 179 (521)
|.-
T Consensus 106 Ep~ 108 (261)
T 2eyu_A 106 EMR 108 (261)
T ss_dssp CCC
T ss_pred CCC
Confidence 973
No 204
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.78 E-value=0.001 Score=61.23 Aligned_cols=37 Identities=30% Similarity=0.341 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCch
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 145 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~ 145 (521)
.+.-+.|.||+|+||||+++++++.+ |...++++...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 45578899999999999999999987 55444555433
No 205
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.77 E-value=0.001 Score=60.40 Aligned_cols=31 Identities=29% Similarity=0.223 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEe
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRA 142 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~---~~~~~~i~ 142 (521)
-|.|.|+||+||||+++.+++.+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999987 88888765
No 206
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.77 E-value=0.0004 Score=69.80 Aligned_cols=29 Identities=24% Similarity=0.547 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
+++|+||||+|||++++++|+.++.+|+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 69999999999999999999999888754
No 207
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.74 E-value=0.0011 Score=60.94 Aligned_cols=34 Identities=21% Similarity=0.127 Sum_probs=29.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc-CCCEEEEeC
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA-GVPFFYRAG 143 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~-~~~~~~i~~ 143 (521)
+.-|.|.|+||+||||+++.+++.+ |.+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 4569999999999999999999998 578876653
No 208
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.74 E-value=0.00094 Score=66.89 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=46.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC--CEEEEeCch-hh-----hh--hhhhhhHHHHHHHHHHHhcCCcEEEEccccc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSE-FE-----EM--FVGVGARRVRSLFQAAKKKAPCIIFIDEIDA 180 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~--~~~~i~~~~-~~-----~~--~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD~ 180 (521)
..++|.||+|+||||+++++++.... -.+.++... +. .. +...+....+..+..+-...|.+|++||.-.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 36999999999999999999987632 234443321 10 00 1100234556677777778899999999653
No 209
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.73 E-value=0.00098 Score=62.43 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=26.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
..+.|.||||+||||+++.+++.++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468999999999999999999999987764
No 210
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.72 E-value=0.01 Score=63.26 Aligned_cols=108 Identities=21% Similarity=0.125 Sum_probs=61.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhhhh--------------hh--------------hhhhH
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM--------------FV--------------GVGAR 156 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~--------------~~--------------g~~~~ 156 (521)
.....++|.||||+|||+|++.++... |.+.+++...+-... +. -.+..
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~ 358 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLED 358 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHH
Confidence 334468899999999999999998753 445655544321100 00 01234
Q ss_pred HHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCC
Q 009974 157 RVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 221 (521)
Q Consensus 157 ~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~ 221 (521)
..+.++..+....|.+|+||=+..+-.... .......+..++..+. . .++.+|.++...
T Consensus 359 ~q~~~~a~~l~~~p~llilDp~~~Ld~~~~--~~~~~~~i~~ll~~l~---~-~g~tvilvsh~~ 417 (525)
T 1tf7_A 359 HLQIIKSEINDFKPARIAIDSLSALARGVS--NNAFRQFVIGVTGYAK---Q-EEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHTTCCSEEEEECHHHHTSSSC--HHHHHHHHHHHHHHHH---H-TTCEEEEEEECS
T ss_pred HHHHHHHHHHhhCCCEEEEcChHHHHhhCC--hHHHHHHHHHHHHHHH---h-CCCEEEEEECcc
Confidence 556677777778899999996655532210 0113344445555544 2 244455555443
No 211
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.70 E-value=0.006 Score=63.59 Aligned_cols=39 Identities=23% Similarity=0.161 Sum_probs=30.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 144 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~ 144 (521)
|..+..-++|.|+||+|||+++..+|... |.++++++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 44444569999999999999999988754 6778877653
No 212
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.68 E-value=0.0064 Score=64.41 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=30.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCc
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGS 144 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~----~~~~~~i~~~ 144 (521)
|..+..-++|.|+||+|||+++..+|... +.++++++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 34444568999999999999999998754 5678877764
No 213
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.67 E-value=0.0075 Score=68.50 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=34.2
Q ss_pred cCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHh
Q 009974 80 KGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 80 ~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~ 133 (521)
+|.++..++|.+.+... ...+-+.|+||.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89999888888776521 11357899999999999999999863
No 214
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.67 E-value=0.00081 Score=61.96 Aligned_cols=29 Identities=31% Similarity=0.353 Sum_probs=25.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
.|.|.|++|+||||+++.+++ +|.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 588999999999999999999 88777654
No 215
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.66 E-value=0.00099 Score=61.06 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=26.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
.|.|.|+||+||||+++.+++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999987664
No 216
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.66 E-value=0.0014 Score=60.37 Aligned_cols=30 Identities=27% Similarity=0.582 Sum_probs=27.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
.+.|.|++|+||||+++.++..++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 688999999999999999999999888753
No 217
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.65 E-value=0.0011 Score=62.36 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=25.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
-|+|.||||+||||+++.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 48899999999999999999999876554
No 218
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.64 E-value=0.00067 Score=61.57 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC---CCEEEEeCch
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAGSE 145 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~---~~~~~i~~~~ 145 (521)
-|+|.|+||+||||+++.|++.++ .++..++..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 589999999999999999999875 3455554333
No 219
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.63 E-value=0.0014 Score=59.67 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=26.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeC
Q 009974 113 ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAG 143 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~~---~~~~~~i~~ 143 (521)
|.|.|++|+||||+++.+++.+ |.+++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7899999999999999999998 999886543
No 220
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.63 E-value=0.0012 Score=60.47 Aligned_cols=30 Identities=33% Similarity=0.457 Sum_probs=26.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
|..|.|.|++|+||||+++.|++. |.+++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 457999999999999999999998 877764
No 221
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.63 E-value=0.0013 Score=62.34 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
|..+.|.||||+||||+++.+++.++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4579999999999999999999999877654
No 222
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.61 E-value=0.002 Score=65.65 Aligned_cols=72 Identities=22% Similarity=0.342 Sum_probs=43.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC----CCEEEEeCc-hh--------hhh-hhhhhhHHHHHHHHHHHhcCCcEE
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEAG----VPFFYRAGS-EF--------EEM-FVGVGARRVRSLFQAAKKKAPCII 173 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~~----~~~~~i~~~-~~--------~~~-~~g~~~~~i~~~f~~a~~~~p~Il 173 (521)
.+...++|.||+|+||||+++++++... ..++.+... ++ ... ..|.....+...+..+-...|.+|
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 213 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEE
Confidence 3345689999999999999999998542 333332211 10 000 001111223455566666789999
Q ss_pred EEcccc
Q 009974 174 FIDEID 179 (521)
Q Consensus 174 ~IDEiD 179 (521)
++||+-
T Consensus 214 lldE~~ 219 (372)
T 2ewv_A 214 FVGEMR 219 (372)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999973
No 223
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.58 E-value=0.0018 Score=62.08 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=32.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCC--------EEEEeCchhhh
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAGVP--------FFYRAGSEFEE 148 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~~~--------~~~i~~~~~~~ 148 (521)
.|.-|.|.|+||+||||+++.|+..++.+ ++.++..++..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 45579999999999999999999999876 33566666543
No 224
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.58 E-value=0.0014 Score=60.54 Aligned_cols=28 Identities=39% Similarity=0.554 Sum_probs=25.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
.+.|.||+|+||||+++.++. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 588999999999999999998 8888764
No 225
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.53 E-value=0.0036 Score=63.70 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+.|.||+|+|||||.++|+.-.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 357899999999999999999843
No 226
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.53 E-value=0.0016 Score=64.19 Aligned_cols=38 Identities=32% Similarity=0.405 Sum_probs=31.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchh
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 146 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 146 (521)
.|+-++|.||+|+|||+++..+|+..+.+++..+.-.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 45678999999999999999999999887776655443
No 227
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.51 E-value=0.0016 Score=62.54 Aligned_cols=31 Identities=35% Similarity=0.585 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
..+.|.||+|+||||+++.+|+.++.+++..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 4699999999999999999999999987763
No 228
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.50 E-value=0.0015 Score=65.26 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=30.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCch
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 145 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~ 145 (521)
++.|+|.||+|+|||+|+..||+.++.+++..+.-.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 347999999999999999999999998887766543
No 229
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.50 E-value=0.0018 Score=61.74 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
|.-+.|.||||+||||+++.+++.+|...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 5679999999999999999999998876543
No 230
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.50 E-value=0.0084 Score=58.00 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+.|.||+|+|||||+++++...
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 458899999999999999998743
No 231
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.47 E-value=0.0014 Score=60.32 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCchhhh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 148 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 148 (521)
.|.|+|++||||||+++.++..+|.+++. +.++..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid--~D~~~~ 48 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN--VDRIGH 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE--HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE--CcHHHH
Confidence 58899999999999999999998988765 444433
No 232
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.46 E-value=0.00084 Score=62.12 Aligned_cols=29 Identities=21% Similarity=0.148 Sum_probs=24.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCC
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAGVP 137 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~~~ 137 (521)
.+.-|.|.|+||+||||+++.+++.++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35579999999999999999999987544
No 233
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.46 E-value=0.0067 Score=65.86 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
+.++++||||||||+++..+...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 46999999999999998877654
No 234
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.44 E-value=0.0018 Score=59.71 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCC--EEEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVP--FFYR 141 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~--~~~i 141 (521)
+.-|+|.|+||+||||+++.|++.++.. ++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 3468999999999999999999988763 5443
No 235
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.44 E-value=0.0023 Score=59.13 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~ 135 (521)
.++-++|+||||+||||+++.|+..++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456799999999999999999999874
No 236
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.41 E-value=0.001 Score=61.65 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~ 135 (521)
.|.-|+|.|+||+||||+++.++..++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356799999999999999999999764
No 237
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.40 E-value=0.0023 Score=64.08 Aligned_cols=38 Identities=18% Similarity=0.076 Sum_probs=29.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeC
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAG 143 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~ 143 (521)
|..+..-++|.|+||+|||+|+..+|..+ +.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34444568999999999999999998763 677777765
No 238
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.40 E-value=0.006 Score=55.92 Aligned_cols=69 Identities=20% Similarity=0.117 Sum_probs=41.5
Q ss_pred ceEEEEcCCCCcHH-HHHHHHHHh--cCCCEEEEeCc---hhhhhh---hhh-----hhHHHHHHHHHHHhcCCcEEEEc
Q 009974 111 KGILLTGAPGTGKT-LLAKAIAGE--AGVPFFYRAGS---EFEEMF---VGV-----GARRVRSLFQAAKKKAPCIIFID 176 (521)
Q Consensus 111 ~~vLL~GppGtGKT-~la~alA~~--~~~~~~~i~~~---~~~~~~---~g~-----~~~~i~~~f~~a~~~~p~Il~ID 176 (521)
+-.++|||.|+||| .|.+++.+. .+..++.+... .+.... .|. ......+++...+ ...+|+||
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlID 98 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGID 98 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEES
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEEE
Confidence 45788999999999 888888763 46777777633 111110 110 0011223333322 24699999
Q ss_pred ccccc
Q 009974 177 EIDAV 181 (521)
Q Consensus 177 EiD~l 181 (521)
|+.-+
T Consensus 99 EaQFf 103 (195)
T 1w4r_A 99 EGQFF 103 (195)
T ss_dssp SGGGC
T ss_pred chhhh
Confidence 99988
No 239
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.39 E-value=0.0064 Score=59.12 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+.|.||+|+|||||+++++...
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999998743
No 240
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.37 E-value=0.0074 Score=60.86 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+.|.||+|||||||.++|+.-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 357899999999999999999843
No 241
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.34 E-value=0.011 Score=54.33 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
+++++.+|+|+|||.++-..+..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999988877764
No 242
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.33 E-value=0.0032 Score=57.08 Aligned_cols=36 Identities=33% Similarity=0.392 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 144 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~ 144 (521)
.+..++|.|+||+||||+++.++..+ +.++..++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 34578999999999999999999876 4455555543
No 243
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.31 E-value=0.015 Score=61.99 Aligned_cols=111 Identities=20% Similarity=0.223 Sum_probs=61.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHH--HHhc--CCCEEEEeCchhhhh------hhhh-------------------------
Q 009974 109 LPKGILLTGAPGTGKTLLAKAI--AGEA--GVPFFYRAGSEFEEM------FVGV------------------------- 153 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~al--A~~~--~~~~~~i~~~~~~~~------~~g~------------------------- 153 (521)
....++|.||+|+|||||++.+ +... +...++++..+.... ..|.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~ 117 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEV 117 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhhh
Confidence 3456999999999999999994 4432 344555554331100 0000
Q ss_pred -----hhHHHHHHHHHHHhcCCcEEEEccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCCCCCC
Q 009974 154 -----GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 224 (521)
Q Consensus 154 -----~~~~i~~~f~~a~~~~p~Il~IDEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~~~~l 224 (521)
..............+.|.+|+|||.-.+.... ..+......+..++..+. . .++.+|.+|++.+.+
T Consensus 118 l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~-~lD~~~~~~l~~ll~~l~---~-~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 118 VGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY-DASSVVRRELFRLVARLK---Q-IGATTVMTTERIEEY 188 (525)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT-CCHHHHHHHHHHHHHHHH---H-HTCEEEEEEECSSSS
T ss_pred hcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhc-CCHHHHHHHHHHHHHHHH---H-CCCEEEEEecCCCCc
Confidence 01122333444455678899999987764321 111122334445555553 2 355677777776654
No 244
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.29 E-value=0.0029 Score=58.87 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=26.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
|.-|.|.|++|+||||+++.++. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 45689999999999999999998 78776653
No 245
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.29 E-value=0.0022 Score=62.99 Aligned_cols=30 Identities=33% Similarity=0.495 Sum_probs=24.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc-CCCEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA-GVPFF 139 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~-~~~~~ 139 (521)
|.-|+|.|+||+||||+++.++... +.+++
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 4568999999999999999999864 54444
No 246
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.28 E-value=0.0028 Score=58.95 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
|..+.|+|++|+|||++++.++..+|.+++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 34689999999999999999999999887653
No 247
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.28 E-value=0.0021 Score=59.36 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=25.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc-CCCEEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA-GVPFFY 140 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~-~~~~~~ 140 (521)
+.-+.|.||||+||||+++.+++.+ +++++.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 3458899999999999999999987 555544
No 248
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.27 E-value=0.0039 Score=64.46 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
.|.-|+|+|+||+||||+++.++..++..++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 45679999999999999999999998765543
No 249
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.26 E-value=0.0028 Score=57.30 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~ 135 (521)
+-+.|.||+|+||||+++.+++...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999998753
No 250
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.24 E-value=0.0028 Score=58.87 Aligned_cols=38 Identities=26% Similarity=0.317 Sum_probs=30.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCchh
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEF 146 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~----~~~~~~i~~~~~ 146 (521)
.+.-++|.|+||+||||+++.+++.+ |.+++.++...+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 34568999999999999999999865 466777775443
No 251
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.24 E-value=0.0031 Score=60.46 Aligned_cols=30 Identities=30% Similarity=0.380 Sum_probs=26.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
..+.|.||+|+||||+++.+|+.+|.+++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 368899999999999999999999987663
No 252
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.22 E-value=0.0035 Score=59.30 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
.+..+.|.|++|+||||+++.++..+|.+++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 34568999999999999999999999987764
No 253
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.18 E-value=0.0093 Score=60.51 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+.|.||+|+|||||.+++|.-.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 457899999999999999999843
No 254
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.17 E-value=0.0025 Score=62.21 Aligned_cols=30 Identities=27% Similarity=0.342 Sum_probs=25.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
|.-|.|+|+||+||||+++.++ .+|.+++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 4569999999999999999999 67877654
No 255
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.16 E-value=0.0088 Score=60.26 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+.|.||+|+|||||.++|+.-.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 357899999999999999999843
No 256
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.15 E-value=0.014 Score=58.83 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+.|.||+|+|||||.++++.-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 357899999999999999999843
No 257
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.15 E-value=0.0031 Score=62.18 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=28.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 144 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~ 144 (521)
+-++|.||+|+|||+++..+|...+..++..+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 3588999999999999999999988766655443
No 258
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.14 E-value=0.013 Score=59.16 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+.|.||+|+|||||.+++|.-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 357899999999999999999843
No 259
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.13 E-value=0.0032 Score=62.95 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=27.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 143 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~ 143 (521)
+-|+|.||+|+|||++++.||..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468999999999999999999999866655443
No 260
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.11 E-value=0.015 Score=58.67 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+-|.||+|+|||||.++++.-.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 458899999999999999998743
No 261
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.10 E-value=0.0057 Score=56.10 Aligned_cols=70 Identities=14% Similarity=0.041 Sum_probs=40.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchhh-------hhhhhhh-----hHHHHHHHHHHHhcCCcEEEE
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE-------EMFVGVG-----ARRVRSLFQAAKKKAPCIIFI 175 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~-------~~~~g~~-----~~~i~~~f~~a~~~~p~Il~I 175 (521)
+-.+++||+|+|||+.+-.++.++ +..++.+....-. ....|.. .....++++.+.. ...+|+|
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvViI 87 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIAI 87 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEEE
Confidence 457889999999999988888765 5665554321100 0011100 0111244444332 3469999
Q ss_pred cccccc
Q 009974 176 DEIDAV 181 (521)
Q Consensus 176 DEiD~l 181 (521)
||++.+
T Consensus 88 DEaqfl 93 (191)
T 1xx6_A 88 DEVQFF 93 (191)
T ss_dssp CSGGGS
T ss_pred ECCCCC
Confidence 999886
No 262
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.09 E-value=0.01 Score=64.15 Aligned_cols=38 Identities=29% Similarity=0.469 Sum_probs=32.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchh
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 146 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~ 146 (521)
.+..|+|+|+||+||||++++|++.+ |.+++.++...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 45679999999999999999999998 999998875444
No 263
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.08 E-value=0.0036 Score=57.47 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.+.-+.|.||+|+||||+++.++...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34568999999999999999999876
No 264
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.08 E-value=0.076 Score=48.99 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=33.4
Q ss_pred CCcccccCcHHHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEcCCCCcHHHHHHHHHHh
Q 009974 74 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGG---KLPKGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 74 ~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~---~~p~~vLL~GppGtGKT~la~alA~~ 133 (521)
.+|+++.-.+++.+.|.+. .+..+..++.... ...+.+++.+|+|+|||..+-..+-.
T Consensus 14 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 4688886666665555441 1222332221100 01246999999999999876655443
No 265
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.07 E-value=0.0036 Score=58.01 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~ 135 (521)
+.-+.|.||+|+||||+++.|+....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999998764
No 266
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.07 E-value=0.026 Score=53.12 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=17.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 009974 111 KGILLTGAPGTGKTLLAKAIA 131 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA 131 (521)
+.+++.||+|||||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 579999999999998766554
No 267
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.03 E-value=0.012 Score=54.07 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCch
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 145 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~ 145 (521)
.+.-+.|.||+|+||||+++.++..+ +.+++..+...
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 34568899999999999999999865 66666654443
No 268
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.01 E-value=0.0027 Score=58.43 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=26.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 142 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~ 142 (521)
.++++|.||||+|||++|..++++.+ +++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 35799999999999999999999876 555443
No 269
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.01 E-value=0.0043 Score=56.28 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=24.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCch
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 145 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~ 145 (521)
-+.|.||+|+||||+++.++...+. .+.++..+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~ 36 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDI 36 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccc
Confidence 4789999999999999999986543 23344433
No 270
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.00 E-value=0.021 Score=59.16 Aligned_cols=36 Identities=33% Similarity=0.331 Sum_probs=29.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 144 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~ 144 (521)
.|+.++++|+||+||||++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 46689999999999999999999865 4566666654
No 271
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.98 E-value=0.0046 Score=57.13 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=27.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
-|.|.||+|||||++++.+|+.+|.+|+-
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999884
No 272
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.97 E-value=0.034 Score=55.40 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=23.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
..|.-+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456779999999999999999999864
No 273
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.96 E-value=0.014 Score=61.97 Aligned_cols=39 Identities=28% Similarity=0.422 Sum_probs=29.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEEeCchhh
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAGSEFE 147 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~---~~~~~i~~~~~~ 147 (521)
.|.-|+|+|.||+||||+++.+++.++ .+...++..++.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r 75 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR 75 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH
Confidence 345789999999999999999999884 445555655443
No 274
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.91 E-value=0.0075 Score=55.75 Aligned_cols=27 Identities=33% Similarity=0.556 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~ 135 (521)
.+.-+.|.||+|+|||||++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999999774
No 275
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.87 E-value=0.0047 Score=56.06 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
+-+.|.||+|+||||+++.+++..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458899999999999999999865
No 276
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.80 E-value=0.0048 Score=57.00 Aligned_cols=30 Identities=40% Similarity=0.575 Sum_probs=25.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC--CCEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAG--VPFF 139 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~--~~~~ 139 (521)
+.-+.|.||+|+||||+++.+++.++ +.++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v 37 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGERVALL 37 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 44688999999999999999999877 4444
No 277
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.78 E-value=0.035 Score=58.20 Aligned_cols=28 Identities=39% Similarity=0.522 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
...+.-+.|.||+|+||||+++.|++.+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3455678899999999999999999865
No 278
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.77 E-value=0.0054 Score=62.61 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=28.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 143 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~ 143 (521)
++-++|.||+|+|||+++..+|..++..++..+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3468899999999999999999999877655443
No 279
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.76 E-value=0.0061 Score=55.81 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+.|.||+|+||||+++.+++..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 458899999999999999999975
No 280
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.74 E-value=0.03 Score=55.61 Aligned_cols=39 Identities=26% Similarity=0.265 Sum_probs=30.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCch
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 145 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~ 145 (521)
...++.++++||+|+||||++..+|..+ +..+..+++.-
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3556789999999999999999998754 56677666543
No 281
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.72 E-value=0.021 Score=64.53 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAG 132 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~ 132 (521)
..-+.|.||.|+||||+.|.++.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHH
Confidence 35689999999999999999874
No 282
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.69 E-value=0.061 Score=52.66 Aligned_cols=35 Identities=29% Similarity=0.183 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeC
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAG 143 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~ 143 (521)
.++.+.++||+|+||||++..+|..+ +..+..+++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 45678899999999999999998754 556665554
No 283
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.69 E-value=0.0075 Score=54.62 Aligned_cols=32 Identities=38% Similarity=0.583 Sum_probs=28.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCch
Q 009974 113 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 145 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~ 145 (521)
+|++|++|+|||++|..++.. +.|.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88888887654
No 284
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.64 E-value=0.029 Score=57.86 Aligned_cols=94 Identities=18% Similarity=0.228 Sum_probs=50.8
Q ss_pred cCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEEeCc-hhh-
Q 009974 73 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAGS-EFE- 147 (521)
Q Consensus 73 ~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~~~p~~vLL~GppGtGKT~la~alA~~~~---~~~~~i~~~-~~~- 147 (521)
..+++++.-....+..++.++ ..+ ...++|.||+|+||||+.+++++... ..++...-. ++.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~---~~~----------ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~ 209 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLI---KRP----------HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI 209 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHH---TSS----------SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC
T ss_pred CCCHHHcCCCHHHHHHHHHHH---Hhc----------CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhcc
Confidence 456777654444444444442 111 12478999999999999999998764 234433211 110
Q ss_pred h-----hhhhhhhHHHHHHHHHHHhcCCcEEEEcccc
Q 009974 148 E-----MFVGVGARRVRSLFQAAKKKAPCIIFIDEID 179 (521)
Q Consensus 148 ~-----~~~g~~~~~i~~~f~~a~~~~p~Il~IDEiD 179 (521)
. .......-.....+..+-...|.++++.|+.
T Consensus 210 ~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 210 DGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp SSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred CCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 0 0000000112233444445678899998853
No 285
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.64 E-value=0.051 Score=49.50 Aligned_cols=18 Identities=39% Similarity=0.482 Sum_probs=15.3
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 009974 111 KGILLTGAPGTGKTLLAK 128 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~ 128 (521)
+.+++.+|+|+|||..+-
T Consensus 39 ~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 479999999999998643
No 286
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.62 E-value=0.12 Score=53.58 Aligned_cols=72 Identities=19% Similarity=0.245 Sum_probs=46.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCchhhhhh----------hh----------hhhHHHHHHHH
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEMF----------VG----------VGARRVRSLFQ 163 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~----~~~~~~i~~~~~~~~~----------~g----------~~~~~i~~~f~ 163 (521)
..|+.++++|++|+||||++-.+|..+ |..+..+++.-..... .+ .....+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 457789999999999999999998654 6777777765322110 00 01222355666
Q ss_pred HHHhcCCcEEEEcccc
Q 009974 164 AAKKKAPCIIFIDEID 179 (521)
Q Consensus 164 ~a~~~~p~Il~IDEiD 179 (521)
.++.....+++||=..
T Consensus 178 ~~~~~~~D~VIIDTpG 193 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAG 193 (433)
T ss_dssp HHHHTTCSEEEEECCC
T ss_pred HHHhCCCCEEEEECCC
Confidence 6664445699988743
No 287
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.61 E-value=0.011 Score=54.37 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~ 135 (521)
.++-+.|.||+|+|||||+++|++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345789999999999999999998764
No 288
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.59 E-value=0.0063 Score=55.94 Aligned_cols=25 Identities=36% Similarity=0.687 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
++.+.|.||+|+||||+++.+++..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3568999999999999999999865
No 289
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.57 E-value=0.068 Score=56.33 Aligned_cols=36 Identities=22% Similarity=0.200 Sum_probs=27.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeC
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAG 143 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~ 143 (521)
..|+.|+|+|+||+||||++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 346789999999999999999999655 566666665
No 290
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.54 E-value=0.067 Score=53.09 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=36.3
Q ss_pred CCcccccCcHHHHHHHHHHHHHhcCchhhhhcCC----CCCceEEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEeC
Q 009974 74 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGG----KLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAG 143 (521)
Q Consensus 74 ~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~----~~p~~vLL~GppGtGKT~la~alA~~~-----~~~~~~i~~ 143 (521)
.+|+++.-.+...+.|.+. .+..+..++.... ...+++++.+|+|+|||+.+-..+.+. +...+.+..
T Consensus 6 ~~f~~~~l~~~~~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P 82 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK--GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTP 82 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECS
T ss_pred CchhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcC
Confidence 3577765555555555432 1222222221100 112579999999999998766554432 344555443
No 291
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.49 E-value=0.016 Score=53.85 Aligned_cols=31 Identities=10% Similarity=-0.123 Sum_probs=23.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEe
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRA 142 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~---~~~~~~i~ 142 (521)
-.+++||.|+|||+.+-.++..+ +..++.+.
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 35589999999999888887654 66666654
No 292
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.37 E-value=0.054 Score=53.11 Aligned_cols=36 Identities=33% Similarity=0.306 Sum_probs=29.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCch
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 145 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~ 145 (521)
+..+++.||+|+||||++..+|..+ +..+..+++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 6678899999999999999999765 66777666643
No 293
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.37 E-value=0.02 Score=56.32 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
...+.-+.|.||+|+||||+++.+|..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456678899999999999999999865
No 294
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.32 E-value=0.0098 Score=55.55 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
..-+.|.||+|+||||+++.+++..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3458899999999999999999976
No 295
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.30 E-value=0.084 Score=57.60 Aligned_cols=34 Identities=35% Similarity=0.450 Sum_probs=23.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCch
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 145 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~ 145 (521)
-.|+.||||||||+++-.+...+ +.+++.+..+.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 47899999999997655554432 55666665543
No 296
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.27 E-value=0.047 Score=60.84 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
..+++.||+|+|||+++..+...
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999977777543
No 297
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.27 E-value=0.012 Score=55.44 Aligned_cols=29 Identities=38% Similarity=0.613 Sum_probs=26.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
-+-|.||||+||||+++.|+..++.+++.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is 38 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIS 38 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEC
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeee
Confidence 36789999999999999999999988764
No 298
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.26 E-value=0.045 Score=56.55 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=20.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~ 133 (521)
.+-.++.|+||||||++...++..
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc
Confidence 346789999999999999888754
No 299
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.26 E-value=0.079 Score=48.97 Aligned_cols=53 Identities=21% Similarity=0.198 Sum_probs=31.1
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcC---CCCCceEEEEcCCCCcHHHH
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLG---GKLPKGILLTGAPGTGKTLL 126 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g---~~~p~~vLL~GppGtGKT~l 126 (521)
...+|+++.-.+.+.+.+.+. .+..+..++... ....+.+++.+|+|+|||..
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHH
Confidence 345799886666665555442 122332222110 01125799999999999976
No 300
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.24 E-value=0.012 Score=62.42 Aligned_cols=69 Identities=20% Similarity=0.280 Sum_probs=43.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEEeCch-hhhh---h--------hhhhhHHHHHHHHHHHhcCCcEEEEc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSE-FEEM---F--------VGVGARRVRSLFQAAKKKAPCIIFID 176 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~--~~~~~i~~~~-~~~~---~--------~g~~~~~i~~~f~~a~~~~p~Il~ID 176 (521)
.+++|.||+|+||||+++++++... ...+.+.... +.-. + .+...-.+..++..+-...|.+++++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg 340 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG 340 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence 4699999999999999999998763 2344443321 1100 0 01111123445555556789999999
Q ss_pred ccc
Q 009974 177 EID 179 (521)
Q Consensus 177 EiD 179 (521)
|+-
T Consensus 341 Eir 343 (511)
T 2oap_1 341 EVR 343 (511)
T ss_dssp CCC
T ss_pred CcC
Confidence 974
No 301
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.24 E-value=0.013 Score=52.49 Aligned_cols=28 Identities=32% Similarity=0.563 Sum_probs=23.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFF 139 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~ 139 (521)
+++||.|+||+|||++|.++... |..++
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 58999999999999999999874 44443
No 302
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.23 E-value=0.011 Score=55.66 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=27.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
-|.|.|++|||||++++.||..+|.+++.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 68899999999999999999999999865
No 303
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.22 E-value=0.038 Score=54.85 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=24.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~~ 135 (521)
..|.-+.|.||+|+||||+++.++..++
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4456788999999999999999998764
No 304
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.22 E-value=0.013 Score=51.87 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+.|.||.|+|||||++++++..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358899999999999999999976
No 305
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.22 E-value=0.0082 Score=58.82 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=24.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~~ 135 (521)
..|.-|.|.||+|+||||+++.|+..++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456788999999999999999998774
No 306
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.19 E-value=0.088 Score=49.20 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=30.2
Q ss_pred cCCcccccCcHHHHHHHHHHHHHhcCchhhhhcC---CCCCceEEEEcCCCCcHHHHH
Q 009974 73 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLG---GKLPKGILLTGAPGTGKTLLA 127 (521)
Q Consensus 73 ~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g---~~~p~~vLL~GppGtGKT~la 127 (521)
..+|+++.-.+.+.+.|.+. .+..+..++... ....+.+++.+|+|+|||..+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 45788876666665555431 122222222110 011257999999999999854
No 307
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.10 E-value=0.069 Score=57.47 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
+..-+.|.||+|+||||+++.+++..
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34568899999999999999998754
No 308
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.06 E-value=0.047 Score=61.86 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 009974 111 KGILLTGAPGTGKTLLAKAIAG 132 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~ 132 (521)
.-++|.||.|+||||+.|.++.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999953
No 309
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.04 E-value=0.028 Score=56.74 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
...+.-+.|.||+|+||||+++.+|..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3456678999999999999999999865
No 310
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.03 E-value=0.0065 Score=56.06 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~ 135 (521)
-|.|.|++|+||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999874
No 311
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.02 E-value=0.014 Score=53.76 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~ 135 (521)
.-+.|.||+|+||||+++++++...
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999999764
No 312
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.00 E-value=0.014 Score=55.36 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVP 137 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~ 137 (521)
.-+-|.||+|+||||+++.++..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 357899999999999999999987644
No 313
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.00 E-value=0.015 Score=54.41 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~ 135 (521)
..-+.|.||+|+|||||+++++....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35688999999999999999998764
No 314
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.97 E-value=0.0097 Score=58.31 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEEeCchhh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAGSEFE 147 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~---~~~~~i~~~~~~ 147 (521)
.-|.|.||+|+||||+++.++..++ ..+..++..++.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 3588999999999999999998765 445556655543
No 315
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.95 E-value=0.1 Score=52.37 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=25.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEe
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRA 142 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~ 142 (521)
+..|.|+|+||+||||++..++..+ +..+..++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 3468999999999999999998764 44444433
No 316
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.95 E-value=0.016 Score=57.07 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=25.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCCE
Q 009974 107 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF 138 (521)
Q Consensus 107 ~~~p~~vLL~GppGtGKT~la~alA~~~~~~~ 138 (521)
.++...+.|+||+|+|||||++.|++.....+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 44445789999999999999999999874333
No 317
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.92 E-value=0.01 Score=55.67 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=15.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHH-Hhc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIA-GEA 134 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA-~~~ 134 (521)
..-+.|.||+|+||||+++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3468899999999999999999 764
No 318
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.91 E-value=0.015 Score=62.47 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=31.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC----CCEEEEeCchh
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAG----VPFFYRAGSEF 146 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~----~~~~~i~~~~~ 146 (521)
.+..|+|.|+||+||||+|++|++.++ .+++.++...+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 456789999999999999999999876 78888775443
No 319
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.88 E-value=0.018 Score=54.32 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=26.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC--CCEEEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAG--VPFFYR 141 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~--~~~~~i 141 (521)
+.-|.|.||||+||||+++.+++.++ .+++..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 34688999999999999999999886 465543
No 320
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.78 E-value=0.11 Score=56.21 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=22.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
++..-+.|.||+|+||||+++.+++..
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 344568899999999999999998754
No 321
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.78 E-value=0.38 Score=49.50 Aligned_cols=36 Identities=28% Similarity=0.183 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCc
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 144 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~ 144 (521)
.|..+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 56678899999999999999999765 5566655553
No 322
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.75 E-value=0.41 Score=47.92 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=31.1
Q ss_pred CCcccccCcHHHHHHHHHHHHHhcCchhhhhcC---CCCCceEEEEcCCCCcHHHHHHHHHH
Q 009974 74 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLG---GKLPKGILLTGAPGTGKTLLAKAIAG 132 (521)
Q Consensus 74 ~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g---~~~p~~vLL~GppGtGKT~la~alA~ 132 (521)
.+|+++.-.+.+.+.|.+. .+..+..++... ....+++++.+|+|+|||..+-..+-
T Consensus 8 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHH--SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHH
Confidence 3577775555555555431 122222222110 01125799999999999987644443
No 323
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.75 E-value=0.019 Score=51.66 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
..-+.|.||+|+||||+++.+...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3478999999999999999998764
No 324
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.72 E-value=0.053 Score=64.14 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
++..-+.|+||+|+||||+++.+.+..
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 444568999999999999999998865
No 325
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.70 E-value=0.12 Score=48.59 Aligned_cols=91 Identities=16% Similarity=0.039 Sum_probs=48.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCch-------hhhhhhhhh-----hHHHHHHHHHHHhcCCcEEEE
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE-------FEEMFVGVG-----ARRVRSLFQAAKKKAPCIIFI 175 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~-------~~~~~~g~~-----~~~i~~~f~~a~~~~p~Il~I 175 (521)
.-.+++||.|+|||+.+-..+..+ +..++.+.... +.+. .|.. .....++++.+ ....+|+|
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr-~G~~~~a~~i~~~~di~~~~--~~~dvViI 96 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTH-DRNTMEALPACLLRDVAQEA--LGVAVIGI 96 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhh-cCCeeEEEecCCHHHHHHHh--ccCCEEEE
Confidence 446789999999997666665433 55555443210 0000 0100 00012244444 33569999
Q ss_pred ccccccccCCcCCCcccHHHHHHHHHhhhcCccCCceEEEeecCC
Q 009974 176 DEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 220 (521)
Q Consensus 176 DEiD~l~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~vivI~ttn~ 220 (521)
||+.-+. . +.+++..++. .++.||++.-+
T Consensus 97 DEaQF~~----------~--v~el~~~l~~----~gi~VI~~GL~ 125 (234)
T 2orv_A 97 DEGQFFP----------D--IVEFCEAMAN----AGKTVIVAALD 125 (234)
T ss_dssp SSGGGCT----------T--HHHHHHHHHH----TTCEEEEECCS
T ss_pred Echhhhh----------h--HHHHHHHHHh----CCCEEEEEecc
Confidence 9998872 1 5566666653 34556666543
No 326
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.70 E-value=0.072 Score=56.74 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+-|.||+|+|||||+++++...
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999853
No 327
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.70 E-value=0.12 Score=57.57 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~ 133 (521)
..-+.|+||.|+||||+.|.++.-
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 346889999999999999999863
No 328
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=94.63 E-value=0.11 Score=48.66 Aligned_cols=55 Identities=18% Similarity=0.197 Sum_probs=31.3
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcC---CCCCceEEEEcCCCCcHHHHHH
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLG---GKLPKGILLTGAPGTGKTLLAK 128 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g---~~~p~~vLL~GppGtGKT~la~ 128 (521)
+..+|+++.-.+.+.+.|... .+..+..++... ....+.+++.+|+|+|||..+-
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAY--GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 346799986555555544431 133333322210 0112579999999999997643
No 329
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.43 E-value=0.026 Score=55.67 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.+.-+.|.||+|+||||+++.+|...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678899999999999999999865
No 330
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.41 E-value=0.18 Score=45.71 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=15.3
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 009974 111 KGILLTGAPGTGKTLLAK 128 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~ 128 (521)
+++++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997544
No 331
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.41 E-value=0.2 Score=47.04 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=15.4
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 009974 111 KGILLTGAPGTGKTLLAK 128 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~ 128 (521)
+.+++.+|+|+|||...-
T Consensus 67 ~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCEEEEECTTSCHHHHHH
T ss_pred CCEEEECCCcCHHHHHHH
Confidence 579999999999998643
No 332
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.40 E-value=0.1 Score=54.35 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=28.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeCc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 144 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~ 144 (521)
.+++++|+|+|||..+-.++...+.+.+.+...
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 599999999999999988888888887777655
No 333
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.34 E-value=0.09 Score=55.00 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC---CCEEEEeC
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAG 143 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~---~~~~~i~~ 143 (521)
.|..|+|.|.||+||||+++.+++.++ .+...++.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~ 75 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNV 75 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEec
Confidence 345799999999999999999999865 34444443
No 334
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.28 E-value=0.028 Score=53.06 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~ 135 (521)
|.-|.|.|++|+||||+++.+++.++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45689999999999999999999984
No 335
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.26 E-value=0.025 Score=55.74 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~ 135 (521)
.+.-+-|.||+|+||||+++.++..++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999999765
No 336
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.25 E-value=0.047 Score=49.06 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
...|++.|++|+|||+|+.++....
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4479999999999999999998754
No 337
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.23 E-value=0.014 Score=56.06 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~ 135 (521)
.+.-|.|.|++|+||||+++.|++.++
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345689999999999999999999983
No 338
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.20 E-value=0.03 Score=55.42 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
..+.-+.|.||+|+|||||++.|+..+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345568899999999999999999865
No 339
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.20 E-value=0.029 Score=50.18 Aligned_cols=32 Identities=22% Similarity=0.104 Sum_probs=25.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEe
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRA 142 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~ 142 (521)
+-+.|.|++|+||||++..++..+ +..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 368899999999999999998865 44544444
No 340
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.19 E-value=0.05 Score=64.30 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
..-+-|+||+|+||||+++.+.+-.
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCc
Confidence 3458899999999999999998743
No 341
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.19 E-value=0.17 Score=51.92 Aligned_cols=33 Identities=33% Similarity=0.343 Sum_probs=25.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGS 144 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~----~~~~~~i~~~ 144 (521)
++++..|+|+|||..+-.++... +.+++.+...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 68999999999999888886654 5666666553
No 342
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.17 E-value=0.066 Score=57.13 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=29.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC----CCEEEEeCchhh
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAG----VPFFYRAGSEFE 147 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~----~~~~~i~~~~~~ 147 (521)
+..+.|.|++|+||||++++|++.++ ..+..++...+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 45688999999999999999999874 355556665553
No 343
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.16 E-value=0.17 Score=46.70 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=15.3
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 009974 111 KGILLTGAPGTGKTLLAK 128 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~ 128 (521)
+.+++.+|+|+|||..+-
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 479999999999998643
No 344
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.15 E-value=0.18 Score=54.34 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=22.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
++..-+.|.||+|+||||+++.+++..
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 344568899999999999999998754
No 345
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.08 E-value=0.31 Score=49.11 Aligned_cols=57 Identities=23% Similarity=0.161 Sum_probs=31.5
Q ss_pred cCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEcCCCCcHHHHHHHHH
Q 009974 73 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGG---KLPKGILLTGAPGTGKTLLAKAIA 131 (521)
Q Consensus 73 ~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~---~~p~~vLL~GppGtGKT~la~alA 131 (521)
..+|+++.-.++..+.|.+. -+..+..++.... ...+++++.+|+|+|||..+-..+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEA--GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 45799987666655555431 1222222221100 012469999999999998654443
No 346
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=93.88 E-value=0.12 Score=50.71 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=25.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEeC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 143 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~ 143 (521)
+++++.+|+|+|||..+-..+-+.+...+.+..
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P 64 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTP 64 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeC
Confidence 369999999999999777766666666665554
No 347
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.88 E-value=0.12 Score=49.07 Aligned_cols=24 Identities=29% Similarity=0.653 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~ 133 (521)
+..|+|.|+||+|||+|..++.+.
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 356999999999999999999764
No 348
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=93.85 E-value=0.14 Score=56.27 Aligned_cols=33 Identities=39% Similarity=0.465 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-Hhc--CCCEEEEeC
Q 009974 111 KGILLTGAPGTGKTLLAKAIA-GEA--GVPFFYRAG 143 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA-~~~--~~~~~~i~~ 143 (521)
+++++.||+|+|||+.+-..+ ..+ +...+++..
T Consensus 41 ~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P 76 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVP 76 (702)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 479999999999999874332 221 445555443
No 349
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.84 E-value=0.023 Score=53.71 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~ 135 (521)
..-+.|.||+|+|||||.++++....
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34588999999999999999997653
No 350
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.78 E-value=0.13 Score=57.06 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
..+.|.||.|+||||+.|.++.-
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 45889999999999999999863
No 351
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.77 E-value=0.35 Score=48.29 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=17.2
Q ss_pred CceEEEEcCCCCcHHHHHHHH
Q 009974 110 PKGILLTGAPGTGKTLLAKAI 130 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~al 130 (521)
++++++.+|+|+|||..+-..
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 468999999999999865443
No 352
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.71 E-value=0.031 Score=53.11 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+.|.||+|+|||||.++++.-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999864
No 353
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.70 E-value=0.038 Score=51.28 Aligned_cols=29 Identities=38% Similarity=0.497 Sum_probs=26.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 141 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~~~i 141 (521)
.|-|+|..||||||+++.++. +|.|++..
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vida 39 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDT 39 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEEC
Confidence 688999999999999999998 89888753
No 354
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.70 E-value=0.026 Score=53.51 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
...-+.|.||+|+|||||++++++..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468899999999999999998854
No 355
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.70 E-value=0.042 Score=49.14 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~ 135 (521)
-.+|+||.|+|||+++++|+.-++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999988664
No 356
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.69 E-value=0.026 Score=53.01 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+.|.||+|+|||||.++++.-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999999764
No 357
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.68 E-value=0.042 Score=57.97 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCC
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGV 136 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~ 136 (521)
+..|.|.|.+||||||++++||+.++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 357999999999999999999999874
No 358
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.67 E-value=0.14 Score=50.97 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
..-+.|.||||+|||||.++++...
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3458899999999999999999754
No 359
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.64 E-value=0.086 Score=54.84 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~ 134 (521)
.++|+||||+|||+|++.++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 58999999999999999887653
No 360
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.62 E-value=0.026 Score=52.34 Aligned_cols=22 Identities=41% Similarity=0.434 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~ 133 (521)
-+.|.||+|+|||||+++++..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999974
No 361
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.57 E-value=0.038 Score=53.46 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~ 134 (521)
.+.|.||+|+|||||.++|++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999865
No 362
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.56 E-value=0.5 Score=47.64 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=30.4
Q ss_pred cCCcccccCcHHHHHHHHHHHHHhcCchhhhhcC---CCCCceEEEEcCCCCcHHHHHHH
Q 009974 73 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLG---GKLPKGILLTGAPGTGKTLLAKA 129 (521)
Q Consensus 73 ~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g---~~~p~~vLL~GppGtGKT~la~a 129 (521)
..+|+++.-.+...+.|.+. .+..+..++... ....+.+++.+|+|+|||+.+-.
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAY--GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHH
T ss_pred hcCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHH
Confidence 35688776666655555431 122222222110 00124699999999999987433
No 363
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.56 E-value=0.062 Score=49.97 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=25.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEe
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRA 142 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~ 142 (521)
.-|.|.||+|+||||+++.++..+ +.+++...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 357889999999999999999876 45665443
No 364
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.54 E-value=0.15 Score=47.81 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
..|+|.|++|+|||+|+.++.+.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 46999999999999999999874
No 365
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.44 E-value=0.14 Score=51.80 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
..++|.||||+|||++++.+++..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 459999999999999999998753
No 366
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.43 E-value=0.38 Score=44.46 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.3
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 009974 111 KGILLTGAPGTGKTLLAK 128 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~ 128 (521)
+.+++.+|+|+|||..+-
T Consensus 58 ~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999997543
No 367
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=93.41 E-value=0.18 Score=48.12 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.4
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 009974 111 KGILLTGAPGTGKTLLAK 128 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~ 128 (521)
+.+++.+|+|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 479999999999998644
No 368
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=93.41 E-value=0.6 Score=48.50 Aligned_cols=53 Identities=25% Similarity=0.362 Sum_probs=31.4
Q ss_pred cCCcccccCcHHHHHHHHHHHHHhcCchhhh-----hcCCCCCceEEEEcCCCCcHHHHH
Q 009974 73 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFT-----RLGGKLPKGILLTGAPGTGKTLLA 127 (521)
Q Consensus 73 ~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~-----~~g~~~p~~vLL~GppGtGKT~la 127 (521)
..+|+++.-.+...+.|... .+..+..++ ..-...++.+++.||+|+|||...
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~--g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 45788887666665555431 122222111 111123568999999999999764
No 369
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.39 E-value=0.029 Score=50.29 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~ 135 (521)
.+.|.||+|+||||+++.+++.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 688999999999999999998753
No 370
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=93.38 E-value=0.63 Score=48.85 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc--------CCCEEEEeCc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA--------GVPFFYRAGS 144 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~--------~~~~~~i~~~ 144 (521)
+++++.+|+|+|||..+-..+.+. +...+.+...
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 369999999999998866665433 5556655543
No 371
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.34 E-value=0.033 Score=51.92 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+.|.||+|+|||||.++++...
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998864
No 372
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.31 E-value=0.043 Score=49.59 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~ 134 (521)
-+.|.||+|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
No 373
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.28 E-value=0.051 Score=51.11 Aligned_cols=32 Identities=25% Similarity=0.244 Sum_probs=22.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-------CCCEEEEe
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRA 142 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~-------~~~~~~i~ 142 (521)
.-|.|.||+|+||||+++.++..+ +.+++...
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 358889999999999999999876 66665443
No 374
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=93.27 E-value=0.31 Score=53.68 Aligned_cols=19 Identities=37% Similarity=0.529 Sum_probs=16.6
Q ss_pred CceEEEEcCCCCcHHHHHH
Q 009974 110 PKGILLTGAPGTGKTLLAK 128 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~ 128 (521)
.++++++||+|+|||+.+.
T Consensus 39 ~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAE 57 (720)
T ss_dssp TCEEEEECCGGGCHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 4689999999999998873
No 375
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=93.26 E-value=0.36 Score=45.62 Aligned_cols=55 Identities=24% Similarity=0.210 Sum_probs=30.8
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcC---CCCCceEEEEcCCCCcHHHHHH
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLG---GKLPKGILLTGAPGTGKTLLAK 128 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g---~~~p~~vLL~GppGtGKT~la~ 128 (521)
...+|+++.-.+...+.|.+.- +..+..++... ....+.+++.+|+|+|||..+-
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g--~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLG--WTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTT--CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred ccCCHHHcCCCHHHHHHHHHcC--CCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence 4567999865555554443310 22222222110 0112579999999999998643
No 376
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.25 E-value=0.046 Score=49.61 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~ 133 (521)
-+.|.||+|+|||+|.+.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
No 377
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.25 E-value=0.042 Score=52.88 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+.|.||+|+|||||.++++.-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999999865
No 378
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.22 E-value=0.032 Score=53.02 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
..-+.|.||+|+|||||.++++...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999998754
No 379
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=93.20 E-value=0.32 Score=53.52 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=17.7
Q ss_pred CceEEEEcCCCCcHHHHHHHH
Q 009974 110 PKGILLTGAPGTGKTLLAKAI 130 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~al 130 (521)
.++++++||+|+|||+.+-..
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEcCCCCcHHHHHHHH
Confidence 468999999999999988433
No 380
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=93.18 E-value=0.51 Score=47.51 Aligned_cols=54 Identities=24% Similarity=0.377 Sum_probs=31.8
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhh-----cCCCCCceEEEEcCCCCcHHHHH
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTR-----LGGKLPKGILLTGAPGTGKTLLA 127 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~-----~g~~~p~~vLL~GppGtGKT~la 127 (521)
...+|+++.-.+...+.|.+. .+..+..++. .-...++.+++.+|+|+|||..+
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred ccCCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 345788876666655555441 1222222221 11113468999999999999875
No 381
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=93.18 E-value=0.46 Score=50.07 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc--------CCCEEEEeCc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA--------GVPFFYRAGS 144 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~--------~~~~~~i~~~ 144 (521)
+.+++.+|+|+|||..+-..+... +...+.+...
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 64 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATK 64 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCC
Confidence 369999999999998866655433 4555655543
No 382
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.18 E-value=0.094 Score=48.86 Aligned_cols=30 Identities=27% Similarity=0.194 Sum_probs=25.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
.-|.|.|++|+||||+++.++..++.+...
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~~ 35 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCKL 35 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccceE
Confidence 468899999999999999999999865433
No 383
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.12 E-value=0.036 Score=53.10 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~ 135 (521)
.-+.|.||+|+|||||.++++....
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3578999999999999999998653
No 384
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.12 E-value=0.049 Score=47.32 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
-.|++.|++|+|||+|++.+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 36999999999999999999874
No 385
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.11 E-value=0.044 Score=52.32 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
.-+.|.||+|+|||||.+.++..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999985
No 386
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.11 E-value=0.063 Score=49.35 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
..++|.|++|+|||+|+.++....
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999854
No 387
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=93.06 E-value=0.29 Score=49.04 Aligned_cols=54 Identities=20% Similarity=0.180 Sum_probs=30.5
Q ss_pred CcCCcccccCcHHHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEcCCCCcHHHHH
Q 009974 72 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGG---KLPKGILLTGAPGTGKTLLA 127 (521)
Q Consensus 72 ~~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g~---~~p~~vLL~GppGtGKT~la 127 (521)
...+|+++.-.+.+.+.+... -+..+..++.... ...+.+++.+|+|+|||..+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHH
Confidence 345788886666655555442 1222222221100 01246999999999999864
No 388
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.05 E-value=0.047 Score=52.45 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
...-+.|.||+|+|||||+++++...
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 33468899999999999999999865
No 389
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.05 E-value=0.038 Score=52.65 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+.|.||+|+|||||+++++...
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999998865
No 390
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.04 E-value=0.055 Score=52.17 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHh
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~ 133 (521)
...-+.|.||+|+|||||++.++..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3345889999999999999999986
No 391
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.03 E-value=0.037 Score=53.27 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
..-+.|.||+|+|||||+++++...
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3458899999999999999999865
No 392
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.03 E-value=0.039 Score=52.33 Aligned_cols=24 Identities=46% Similarity=0.540 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+.|.||+|+|||||.++++...
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999865
No 393
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.01 E-value=0.24 Score=49.44 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
....+.+.|+||+||||++++++..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999998754
No 394
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.00 E-value=0.038 Score=53.45 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~ 135 (521)
...-+.|.||+|+|||||+++++....
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 334588999999999999999998653
No 395
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.98 E-value=0.04 Score=51.86 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+.|.||+|+|||||.++++...
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999864
No 396
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.93 E-value=0.052 Score=54.81 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCC
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVP 137 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~ 137 (521)
..-+.|.||+|+|||||++.|++.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3468899999999999999999986543
No 397
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.92 E-value=0.059 Score=46.51 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~ 133 (521)
.+++.|++|+|||++++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 398
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=92.89 E-value=0.19 Score=53.93 Aligned_cols=23 Identities=48% Similarity=0.507 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
+.+++++|+|+|||..+-.++..
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~ 221 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWK 221 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHHHH
Confidence 46899999999999988777654
No 399
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.88 E-value=0.054 Score=54.65 Aligned_cols=25 Identities=40% Similarity=0.595 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~ 135 (521)
..++|.||+|+||||+++++++...
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4799999999999999999998653
No 400
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.87 E-value=0.34 Score=55.53 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=19.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q 009974 110 PKGILLTGAPGTGKTLLAKAIA 131 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA 131 (521)
...++|+||.|+||||+.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3578999999999999999994
No 401
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.80 E-value=0.043 Score=52.37 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~ 135 (521)
.-+.|.||+|+|||||.++++....
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4588999999999999999998653
No 402
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=92.79 E-value=0.28 Score=49.59 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=31.8
Q ss_pred cCCcccccCcHHHHHHHHHHHHHhcCchhhhhcC---CCCCceEEEEcCCCCcHHHHHHHH
Q 009974 73 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLG---GKLPKGILLTGAPGTGKTLLAKAI 130 (521)
Q Consensus 73 ~~~f~di~G~~~~k~~L~~~v~~l~~~~~~~~~g---~~~p~~vLL~GppGtGKT~la~al 130 (521)
..+|+++.-.+.+.+.|... -+..+..++... ....+.+++.+|+|+|||..+-..
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~ 94 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS 94 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHH
Confidence 45799876666665555432 122232222110 001257999999999999765543
No 403
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.74 E-value=0.055 Score=51.86 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
..-+.|.||+|+|||||.++++...
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999999864
No 404
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.73 E-value=0.069 Score=50.49 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
+.-|.|.|++|+||||+++.++..+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4468899999999999999999866
No 405
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.71 E-value=0.045 Score=53.20 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~ 135 (521)
.-+.|.||+|+|||||.++++....
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4588999999999999999998653
No 406
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.69 E-value=0.056 Score=52.06 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
..-+.|.||+|+|||||.++++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3458899999999999999999865
No 407
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.69 E-value=0.073 Score=49.86 Aligned_cols=28 Identities=25% Similarity=0.194 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCC
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEAGV 136 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~~~ 136 (521)
.+.-|.|.|++|+||||+++.+++.++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3456888999999999999999986543
No 408
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.67 E-value=0.053 Score=54.98 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+.|.||+|+|||||.++||.-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 357899999999999999999843
No 409
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.65 E-value=0.085 Score=56.30 Aligned_cols=37 Identities=27% Similarity=0.315 Sum_probs=29.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCCEEEEeCchh
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 146 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~ 146 (521)
+..|+|+|+||+||||+++.+++.+ |.++..++...+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 4568999999999999999999876 456766665443
No 410
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.64 E-value=0.057 Score=48.48 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~ 133 (521)
...+++.|++|+|||+|...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999764
No 411
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.63 E-value=0.056 Score=47.44 Aligned_cols=22 Identities=41% Similarity=0.712 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~ 133 (521)
-+.|.|+||+|||+|.+.+++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999863
No 412
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=92.61 E-value=0.31 Score=57.41 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=22.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
++..-+-|.||+|+||||+++.+++..
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568899999999999999998754
No 413
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.58 E-value=0.043 Score=55.10 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+.|.||+|+|||||.+++|.-.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 457899999999999999999854
No 414
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.56 E-value=0.048 Score=52.13 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+.|.||+|+|||||.++++...
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999865
No 415
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.53 E-value=0.048 Score=48.85 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 009974 112 GILLTGAPGTGKTLLAKAIAG 132 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~ 132 (521)
-++|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 416
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.53 E-value=0.068 Score=46.08 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~ 134 (521)
.+++.|++|+|||++++.+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 417
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.52 E-value=0.07 Score=46.13 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~ 133 (521)
.|++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999864
No 418
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.44 E-value=0.12 Score=47.60 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAG 135 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~ 135 (521)
..+++.|++|+|||+++..++....
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999998753
No 419
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.39 E-value=0.58 Score=43.22 Aligned_cols=23 Identities=35% Similarity=0.654 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
..|++.|++|+|||+|+.++...
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999764
No 420
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.37 E-value=0.053 Score=52.20 Aligned_cols=25 Identities=36% Similarity=0.622 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
..-+.|.||+|+|||||.++++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999875
No 421
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.37 E-value=0.066 Score=58.17 Aligned_cols=33 Identities=36% Similarity=0.446 Sum_probs=24.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeCc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGS 144 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~----~~~~~~i~~~ 144 (521)
..++.||||||||+++..++..+ +.+++.+..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t 233 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 233 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 57899999999999887776543 3455555443
No 422
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.33 E-value=0.089 Score=49.24 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 140 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~~ 140 (521)
+.-+.|.||.|+||||+++.++.. +..+..
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~ 49 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY-KNDICL 49 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG-TTTEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc-cCCeEE
Confidence 345789999999999999999987 444443
No 423
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.30 E-value=0.078 Score=46.05 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~ 134 (521)
.|++.|++|+|||+|++++....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999998643
No 424
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.29 E-value=0.078 Score=45.86 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
..|++.|++|+|||+|++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 425
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.21 E-value=0.063 Score=54.73 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~ 133 (521)
..-+.|.||+|||||||.++|+.-
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 346889999999999999999974
No 426
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.21 E-value=0.08 Score=46.03 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~ 134 (521)
.|++.|++|+|||+|++.+....
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 69999999999999999998754
No 427
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.19 E-value=0.079 Score=46.07 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~ 133 (521)
.|++.|++|+|||+|++.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 428
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.15 E-value=0.096 Score=51.59 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=23.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFF 139 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~ 139 (521)
++++|.|++|+|||++|.++... |..++
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 68999999999999999999875 44444
No 429
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.15 E-value=0.078 Score=46.44 Aligned_cols=22 Identities=50% Similarity=0.815 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~ 133 (521)
.|++.|+||+|||+|++.+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 6999999999999999999764
No 430
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.15 E-value=0.093 Score=46.15 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~ 133 (521)
+..|++.|++|+|||+|++.+...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999763
No 431
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.14 E-value=0.083 Score=46.01 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
-.|++.|++|+|||+|++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 432
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.14 E-value=0.082 Score=46.45 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
..|++.|++|+|||+|++.+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 433
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.14 E-value=0.14 Score=52.28 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=16.1
Q ss_pred ceEEEEcCCCCcHHHHHHHH
Q 009974 111 KGILLTGAPGTGKTLLAKAI 130 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~al 130 (521)
+.+++.+|+|+|||..+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 47999999999999854444
No 434
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.13 E-value=0.045 Score=55.09 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+.|.||+|+|||||.+++|.-.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 357899999999999999999843
No 435
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.05 E-value=0.17 Score=46.55 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=30.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-CEEEEeCchh
Q 009974 106 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-PFFYRAGSEF 146 (521)
Q Consensus 106 g~~~p~~vLL~GppGtGKT~la~alA~~~~~-~~~~i~~~~~ 146 (521)
+..|+.-|+|+|.||+||+++|+.+.+..+. .+..++.++-
T Consensus 7 ~~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~ 48 (202)
T 3ch4_B 7 GGAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGP 48 (202)
T ss_dssp BCCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHH
T ss_pred ccCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHH
Confidence 3446678999999999999999999887753 2444555553
No 436
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.98 E-value=0.078 Score=47.23 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
..+.|.|++|+|||+|.+.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999873
No 437
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.97 E-value=0.084 Score=46.49 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
..|++.|++|+|||+|++.+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999874
No 438
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.97 E-value=0.08 Score=46.08 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~ 133 (521)
.|++.|++|+|||+|++++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 439
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.95 E-value=0.091 Score=45.52 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~ 133 (521)
.+++.|++|+|||+|++++...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 440
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.94 E-value=0.084 Score=46.74 Aligned_cols=23 Identities=35% Similarity=0.693 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
.-+.|.|+||+|||+|.++++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999875
No 441
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.93 E-value=0.1 Score=47.11 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~ 133 (521)
...|++.|++|+|||+|++.+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999874
No 442
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.92 E-value=0.092 Score=45.58 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~ 133 (521)
.|++.|++|+|||+|++++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999863
No 443
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=91.89 E-value=0.23 Score=46.11 Aligned_cols=30 Identities=20% Similarity=0.064 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHH-HHHHHHH--hcCCCEEEE
Q 009974 112 GILLTGAPGTGKTL-LAKAIAG--EAGVPFFYR 141 (521)
Q Consensus 112 ~vLL~GppGtGKT~-la~alA~--~~~~~~~~i 141 (521)
-.+++||.|+|||+ +.+.+-+ ..+..++.+
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~ 62 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVF 62 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 46789999999999 5555433 235555544
No 444
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.88 E-value=0.081 Score=45.94 Aligned_cols=21 Identities=52% Similarity=0.926 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 009974 112 GILLTGAPGTGKTLLAKAIAG 132 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~ 132 (521)
.+++.|+||+|||+|++.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999964
No 445
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.88 E-value=0.11 Score=45.30 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
..|++.|++|+|||+|+..+...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999763
No 446
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.85 E-value=0.092 Score=46.16 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
-.|++.|++|+|||+|++.+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36999999999999999999753
No 447
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.83 E-value=0.096 Score=45.35 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~ 133 (521)
.+++.|++|+|||+|++.+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999764
No 448
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.83 E-value=0.09 Score=45.78 Aligned_cols=21 Identities=38% Similarity=0.737 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 009974 112 GILLTGAPGTGKTLLAKAIAG 132 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~ 132 (521)
.|++.|+||+|||+|++.+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999964
No 449
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.79 E-value=0.089 Score=48.90 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-|.|.|++|+||||.++.++..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 357889999999999999999876
No 450
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.76 E-value=0.082 Score=51.62 Aligned_cols=25 Identities=36% Similarity=0.503 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
..-+.|.||+|+|||||.+++++..
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3458899999999999999998754
No 451
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.75 E-value=0.18 Score=47.68 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=26.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc--CCCEEEEe
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAGEA--GVPFFYRA 142 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~~~--~~~~~~i~ 142 (521)
.+..+++.|++|+||||++..+|..+ +..+..++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 34578899999999999999998654 44554444
No 452
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.73 E-value=0.097 Score=46.59 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
..|++.|++|+|||+|++.+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999863
No 453
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.69 E-value=0.27 Score=57.92 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~ 133 (521)
..-+-|.||+|+||||+++.+++.
T Consensus 1059 Ge~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1059 GQTLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp SSEEEEECSSSTTHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999999874
No 454
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=91.64 E-value=0.5 Score=48.67 Aligned_cols=17 Identities=35% Similarity=0.386 Sum_probs=15.2
Q ss_pred ceEEEEcCCCCcHHHHH
Q 009974 111 KGILLTGAPGTGKTLLA 127 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la 127 (521)
+.+++.||+|+|||..+
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 47999999999999875
No 455
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.63 E-value=0.099 Score=45.87 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~ 133 (521)
.|++.|++|+|||+|++.+...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999863
No 456
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.62 E-value=0.13 Score=46.41 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAG 132 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~ 132 (521)
...|++.|++|+|||+|++.+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 44699999999999999999964
No 457
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.56 E-value=0.1 Score=46.55 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
..|++.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 458
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.52 E-value=0.11 Score=45.65 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
..|++.|++|+|||+|++.+....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 369999999999999999998743
No 459
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.50 E-value=0.091 Score=54.80 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
..-+.|.||+|+|||||+|.|++..
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3458999999999999999999854
No 460
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.48 E-value=0.11 Score=46.89 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~ 133 (521)
...|++.|++|+|||+|++.+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 347999999999999999999864
No 461
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.46 E-value=0.058 Score=53.10 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=22.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 108 KLPKGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 108 ~~p~~vLL~GppGtGKT~la~alA~~~ 134 (521)
++..-+.|.||+|+|||||++.+++..
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 344568999999999999999998865
No 462
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=91.46 E-value=0.88 Score=42.42 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=14.9
Q ss_pred ceEEEEcCCCCcHHHHH
Q 009974 111 KGILLTGAPGTGKTLLA 127 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la 127 (521)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 56999999999999863
No 463
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.46 E-value=0.11 Score=46.45 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
..|++.|++|+|||+|+..++...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 369999999999999999998753
No 464
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.45 E-value=0.11 Score=46.16 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~ 134 (521)
.|++.|++|+|||+|++++....
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 59999999999999999998743
No 465
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.45 E-value=0.11 Score=45.17 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~ 134 (521)
-.+|+||.|+|||++..|+.--+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997544
No 466
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.44 E-value=0.11 Score=45.78 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
..|++.|++|+|||+|++++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999875
No 467
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=91.43 E-value=0.092 Score=51.65 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGEAGVPFF 139 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~~~~~~~ 139 (521)
.+|+||.|+||+|||++|..+.. .|..++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 36899999999999999999875 355554
No 468
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.41 E-value=0.14 Score=45.87 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~ 133 (521)
+-.|++.|++|+|||+|++++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999875
No 469
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.41 E-value=0.11 Score=46.59 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
..|++.|++|+|||+|++.+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36999999999999999999874
No 470
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=91.40 E-value=0.64 Score=43.67 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=15.0
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 009974 111 KGILLTGAPGTGKTLLAK 128 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~ 128 (521)
+.+++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 469999999999997543
No 471
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=91.38 E-value=0.98 Score=50.35 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=24.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc--------CCCEEEEeC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA--------GVPFFYRAG 143 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~--------~~~~~~i~~ 143 (521)
+++++.+|+|+|||..+-..+... +.+.+.+..
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~P 304 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 479999999999998876665443 556666654
No 472
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.36 E-value=0.56 Score=42.69 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~ 133 (521)
.|+|.|++|+|||+|++.+...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999864
No 473
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.36 E-value=0.15 Score=50.29 Aligned_cols=23 Identities=48% Similarity=0.553 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~ 134 (521)
-++|.|+.|+||||+.+.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 57899999999999999999754
No 474
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.36 E-value=0.14 Score=52.46 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~ 133 (521)
.+.|.||+|+|||||.+++++.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999984
No 475
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=91.36 E-value=0.78 Score=48.23 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=16.2
Q ss_pred CceEEEEcCCCCcHHHHHH
Q 009974 110 PKGILLTGAPGTGKTLLAK 128 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~ 128 (521)
++.+++.+|+|+|||..+-
T Consensus 158 ~~~~ll~apTGsGKT~~~~ 176 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFA 176 (508)
T ss_dssp CCCEEEECCSSTTSHHHHH
T ss_pred CCCEEEECCCCccHHHHHH
Confidence 4689999999999998643
No 476
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.35 E-value=0.11 Score=46.10 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
..|++.|++|+|||+|++.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 477
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.33 E-value=0.11 Score=45.70 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
..|++.|++|+|||+|++.+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 478
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.31 E-value=0.11 Score=45.81 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
..|++.|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 36999999999999999999864
No 479
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.26 E-value=0.1 Score=45.81 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 009974 111 KGILLTGAPGTGKTLLAKAIAG 132 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~ 132 (521)
..|++.|++|+|||+|++++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999999965
No 480
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=91.21 E-value=0.31 Score=52.24 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=15.0
Q ss_pred CceEEEEcCCCCcHHHH
Q 009974 110 PKGILLTGAPGTGKTLL 126 (521)
Q Consensus 110 p~~vLL~GppGtGKT~l 126 (521)
.+.+++.+|+|+|||..
T Consensus 60 ~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 60 DHDVIARAKTGTGKTFA 76 (579)
T ss_dssp SEEEEEECCTTSCHHHH
T ss_pred CCeEEEEcCCCcHHHHH
Confidence 45899999999999984
No 481
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.20 E-value=0.12 Score=46.19 Aligned_cols=24 Identities=29% Similarity=0.166 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
..|++.|++|+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 359999999999999999887654
No 482
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.19 E-value=0.13 Score=46.88 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
..|++.|++|+|||+|+.++...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 483
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.15 E-value=0.14 Score=47.34 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~ 134 (521)
.-+++.|++|+|||+++..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999875
No 484
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.14 E-value=0.19 Score=46.31 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=24.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc--CCCEEEEe
Q 009974 113 ILLTGAPGTGKTLLAKAIAGEA--GVPFFYRA 142 (521)
Q Consensus 113 vLL~GppGtGKT~la~alA~~~--~~~~~~i~ 142 (521)
|.|.|+.|+||||.++.++..+ +.+++...
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~ 36 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR 36 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 6788999999999999999877 55666543
No 485
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=91.08 E-value=0.1 Score=49.46 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=24.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCCE
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEAGVPF 138 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~~~~~ 138 (521)
-+.|+|++|||||++++.+...+|.++
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 377999999999999999999888775
No 486
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.08 E-value=0.099 Score=46.50 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~ 133 (521)
.|++.|++|+|||+|++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999864
No 487
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=91.03 E-value=0.1 Score=58.25 Aligned_cols=32 Identities=34% Similarity=0.437 Sum_probs=23.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc----CCCEEEEeC
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAG 143 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~----~~~~~~i~~ 143 (521)
..++.||||||||+++..++..+ +.+++.+..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~ 408 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP 408 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEES
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcC
Confidence 47899999999999888776643 344554443
No 488
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=91.03 E-value=0.48 Score=49.63 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---C-CCEEEEeC
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEA---G-VPFFYRAG 143 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~---~-~~~~~i~~ 143 (521)
+.++++||+|+|||..+-.++... + .+++.+..
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P 165 (510)
T 2oca_A 129 RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVP 165 (510)
T ss_dssp SEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEES
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 368999999999999987766542 3 25555544
No 489
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=91.03 E-value=0.73 Score=46.06 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~ 133 (521)
+..+++.|+||+|||++..++++.
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999864
No 490
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.02 E-value=0.12 Score=45.73 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=20.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 009974 109 LPKGILLTGAPGTGKTLLAKAIAG 132 (521)
Q Consensus 109 ~p~~vLL~GppGtGKT~la~alA~ 132 (521)
.+..|++.|++|+|||+|...+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999874
No 491
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.02 E-value=0.13 Score=45.58 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
..|++.|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 492
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.01 E-value=0.21 Score=50.68 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~ 133 (521)
..++++.||+|+|||++++.++..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHH
Confidence 347999999999999999998764
No 493
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.00 E-value=0.13 Score=45.29 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~ 133 (521)
..|++.|++|+|||+|++.+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 494
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.98 E-value=0.21 Score=44.46 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 009974 111 KGILLTGAPGTGKTLLAKAIAG 132 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~ 132 (521)
..|++.|++|+|||+|.+.+..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999985
No 495
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.96 E-value=0.16 Score=44.79 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 009974 110 PKGILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 110 p~~vLL~GppGtGKT~la~alA~~ 133 (521)
...+++.|++|+|||+|++.+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999864
No 496
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=90.95 E-value=0.71 Score=49.01 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=15.1
Q ss_pred CceEEEEcCCCCcHHHH
Q 009974 110 PKGILLTGAPGTGKTLL 126 (521)
Q Consensus 110 p~~vLL~GppGtGKT~l 126 (521)
.+.+++.+|+|+|||..
T Consensus 111 ~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFA 127 (563)
T ss_dssp SEEEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCccHH
Confidence 46899999999999974
No 497
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.94 E-value=0.14 Score=46.12 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~ 133 (521)
.|++.|++|+|||++.+.+...
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999873
No 498
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=90.94 E-value=0.3 Score=51.78 Aligned_cols=32 Identities=19% Similarity=0.047 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCCEEEEe
Q 009974 111 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 142 (521)
Q Consensus 111 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i~ 142 (521)
+.+++.+|+|+|||.....-+-..+...+.++
T Consensus 41 ~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~ 72 (523)
T 1oyw_A 41 RDCLVVMPTGGGKSLCYQIPALLLNGLTVVVS 72 (523)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHSSSEEEEEC
T ss_pred CCEEEECCCCcHHHHHHHHHHHHhCCCEEEEC
Confidence 46999999999999865544433333334343
No 499
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.93 E-value=0.13 Score=45.96 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 009974 112 GILLTGAPGTGKTLLAKAIAGEA 134 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~~ 134 (521)
.|++.|++|+|||+|++.+...-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 69999999999999999998743
No 500
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.91 E-value=0.13 Score=45.42 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 009974 112 GILLTGAPGTGKTLLAKAIAGE 133 (521)
Q Consensus 112 ~vLL~GppGtGKT~la~alA~~ 133 (521)
.|++.|++|+|||+|++.+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
Done!