BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009975
(521 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 601 bits (1550), Expect = e-172, Method: Compositional matrix adjust.
Identities = 296/515 (57%), Positives = 384/515 (74%), Gaps = 4/515 (0%)
Query: 1 MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
+AE+LG F VGG E+ H LLPPLE+L TVEET VRDKAVESL I + SDL +
Sbjct: 62 LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 121
Query: 61 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
+PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD PMVRR+AAS
Sbjct: 122 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 181
Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
LG+FA +E ++K++I+ +F +L D+QDSVRLLAVE C + +LL +D A ++P +
Sbjct: 182 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 241
Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
++DKSWRVRYMVA++ EL +AVGPE T+ DLVPA+ L++D EAEVR AA+ KV +
Sbjct: 242 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 301
Query: 241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
FC L+ + + + ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+
Sbjct: 302 FCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 361
Query: 297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY+P
Sbjct: 362 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 421
Query: 357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA I P+VL
Sbjct: 422 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 481
Query: 417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++FNVAK LQ +
Sbjct: 482 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 541
Query: 477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
PI+D S ++ ++P L +LT+D DVDV++FA +A+
Sbjct: 542 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 576
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 84/402 (20%), Positives = 157/402 (39%), Gaps = 44/402 (10%)
Query: 2 AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYI 61
A +LG F + ++P L + E+ VR AVE+ I + + DL +
Sbjct: 179 ASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVM 238
Query: 62 PLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
P +++ A + + R F + P+I KT+L + L +D VR +A+
Sbjct: 239 PTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHK 298
Query: 121 LGKFAATVEP-----------------------AHLKTDIMSIFEDLT------------ 145
+ +F + H+K+ + S+ L+
Sbjct: 299 VKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHL 358
Query: 146 --------QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVAN 197
+D+ VRL + + +++ + +LP IV ++D WRVR +
Sbjct: 359 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIE 418
Query: 198 QLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 257
+ L +G E L + L D+ +R AA + K E A I+P
Sbjct: 419 YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 478
Query: 258 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 317
V +S D + R I ++ + G+D T + +LP L + D +VR N+ L
Sbjct: 479 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 538
Query: 318 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 359
++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 539 KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 580
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/432 (20%), Positives = 159/432 (36%), Gaps = 47/432 (10%)
Query: 87 YPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ 146
YP A +L ELR+ QL R ++ L A + +++++ D T
Sbjct: 4 YPIA--VLIDELRNEDVQL--------RLNSIKKLSTIALALGVERTRSELLPFLTD-TI 52
Query: 147 DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 206
D+D V L E L+ + V +LP + + + + VR L +
Sbjct: 53 YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEH 112
Query: 207 GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 266
P VP RL + R +A G + C + + L SD +
Sbjct: 113 SPSDLEAHFVPLVKRLAGGDWFTSRTSACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDT 171
Query: 267 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 326
VR A AS + A +L D +++P+F +L DE VRL + + Q++ +
Sbjct: 172 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 231
Query: 327 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 386
L ++P + + AED+ WRVR + + L +G L ++D +
Sbjct: 232 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 291
Query: 387 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 446
R AA++ +K E + +
Sbjct: 292 RAAASHKVKEFCENLSAD-----------------------------------CRENVIM 316
Query: 447 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 506
S++LP + D ++K +A V+ L PI+ + + + P + +D +VR
Sbjct: 317 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLN 376
Query: 507 ATQAIQSIDHVM 518
+ ++ V+
Sbjct: 377 IISNLDCVNEVI 388
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 601 bits (1550), Expect = e-172, Method: Compositional matrix adjust.
Identities = 296/515 (57%), Positives = 384/515 (74%), Gaps = 4/515 (0%)
Query: 1 MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
+AE+LG F VGG E+ H LLPPLE+L TVEET VRDKAVESL I + SDL +
Sbjct: 60 LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 119
Query: 61 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
+PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD PMVRR+AAS
Sbjct: 120 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 179
Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
LG+FA +E ++K++I+ +F +L D+QDSVRLLAVE C + +LL +D A ++P +
Sbjct: 180 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 239
Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
++DKSWRVRYMVA++ EL +AVGPE T+ DLVPA+ L++D EAEVR AA+ KV +
Sbjct: 240 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 299
Query: 241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
FC L+ + + + ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+
Sbjct: 300 FCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 359
Query: 297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY+P
Sbjct: 360 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 419
Query: 357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA I P+VL
Sbjct: 420 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 479
Query: 417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++FNVAK LQ +
Sbjct: 480 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 539
Query: 477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
PI+D S ++ ++P L +LT+D DVDV++FA +A+
Sbjct: 540 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 574
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 84/402 (20%), Positives = 157/402 (39%), Gaps = 44/402 (10%)
Query: 2 AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYI 61
A +LG F + ++P L + E+ VR AVE+ I + + DL +
Sbjct: 177 ASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVM 236
Query: 62 PLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
P +++ A + + R F + P+I KT+L + L +D VR +A+
Sbjct: 237 PTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHK 296
Query: 121 LGKFAATVEP-----------------------AHLKTDIMSIFEDLT------------ 145
+ +F + H+K+ + S+ L+
Sbjct: 297 VKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHL 356
Query: 146 --------QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVAN 197
+D+ VRL + + +++ + +LP IV ++D WRVR +
Sbjct: 357 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIE 416
Query: 198 QLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 257
+ L +G E L + L D+ +R AA + K E A I+P
Sbjct: 417 YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 476
Query: 258 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 317
V +S D + R I ++ + G+D T + +LP L + D +VR N+ L
Sbjct: 477 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 536
Query: 318 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 359
++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 537 KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 578
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/432 (20%), Positives = 159/432 (36%), Gaps = 47/432 (10%)
Query: 87 YPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ 146
YP A +L ELR+ QL R ++ L A + +++++ D T
Sbjct: 2 YPIA--VLIDELRNEDVQL--------RLNSIKKLSTIALALGVERTRSELLPFLTD-TI 50
Query: 147 DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 206
D+D V L E L+ + V +LP + + + + VR L +
Sbjct: 51 YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEH 110
Query: 207 GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 266
P VP RL + R +A G + C + + L SD +
Sbjct: 111 SPSDLEAHFVPLVKRLAGGDWFTSRTSACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDT 169
Query: 267 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 326
VR A AS + A +L D +++P+F +L DE VRL + + Q++ +
Sbjct: 170 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 229
Query: 327 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 386
L ++P + + AED+ WRVR + + L +G L ++D +
Sbjct: 230 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 289
Query: 387 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 446
R AA++ +K E + +
Sbjct: 290 RAAASHKVKEFCENLSAD-----------------------------------CRENVIM 314
Query: 447 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 506
S++LP + D ++K +A V+ L PI+ + + + P + +D +VR
Sbjct: 315 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLN 374
Query: 507 ATQAIQSIDHVM 518
+ ++ V+
Sbjct: 375 IISNLDCVNEVI 386
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 601 bits (1550), Expect = e-172, Method: Compositional matrix adjust.
Identities = 296/515 (57%), Positives = 384/515 (74%), Gaps = 4/515 (0%)
Query: 1 MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
+AE+LG F VGG E+ H LLPPLE+L TVEET VRDKAVESL I + SDL +
Sbjct: 68 LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 127
Query: 61 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
+PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD PMVRR+AAS
Sbjct: 128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 187
Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
LG+FA +E ++K++I+ +F +L D+QDSVRLLAVE C + +LL +D A ++P +
Sbjct: 188 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 247
Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
++DKSWRVRYMVA++ EL +AVGPE T+ DLVPA+ L++D EAEVR AA+ KV +
Sbjct: 248 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 307
Query: 241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
FC L+ + + + ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+
Sbjct: 308 FCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 367
Query: 297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY+P
Sbjct: 368 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 427
Query: 357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA I P+VL
Sbjct: 428 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 487
Query: 417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++FNVAK LQ +
Sbjct: 488 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 547
Query: 477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
PI+D S ++ ++P L +LT+D DVDV++FA +A+
Sbjct: 548 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 582
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 84/402 (20%), Positives = 157/402 (39%), Gaps = 44/402 (10%)
Query: 2 AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYI 61
A +LG F + ++P L + E+ VR AVE+ I + + DL +
Sbjct: 185 ASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVM 244
Query: 62 PLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
P +++ A + + R F + P+I KT+L + L +D VR +A+
Sbjct: 245 PTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHK 304
Query: 121 LGKFAATVEP-----------------------AHLKTDIMSIFEDLT------------ 145
+ +F + H+K+ + S+ L+
Sbjct: 305 VKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHL 364
Query: 146 --------QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVAN 197
+D+ VRL + + +++ + +LP IV ++D WRVR +
Sbjct: 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIE 424
Query: 198 QLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 257
+ L +G E L + L D+ +R AA + K E A I+P
Sbjct: 425 YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 484
Query: 258 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 317
V +S D + R I ++ + G+D T + +LP L + D +VR N+ L
Sbjct: 485 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 544
Query: 318 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 359
++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 545 KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/432 (20%), Positives = 159/432 (36%), Gaps = 47/432 (10%)
Query: 87 YPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ 146
YP A +L ELR+ QL R ++ L A + +++++ D T
Sbjct: 10 YPIA--VLIDELRNEDVQL--------RLNSIKKLSTIALALGVERTRSELLPFLTD-TI 58
Query: 147 DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 206
D+D V L E L+ + V +LP + + + + VR L +
Sbjct: 59 YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEH 118
Query: 207 GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 266
P VP RL + R +A G + C + + L SD +
Sbjct: 119 SPSDLEAHFVPLVKRLAGGDWFTSRTSACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDT 177
Query: 267 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 326
VR A AS + A +L D +++P+F +L DE VRL + + Q++ +
Sbjct: 178 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 237
Query: 327 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 386
L ++P + + AED+ WRVR + + L +G L ++D +
Sbjct: 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297
Query: 387 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 446
R AA++ +K E + +
Sbjct: 298 RAAASHKVKEFCENLSAD-----------------------------------CRENVIM 322
Query: 447 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 506
S++LP + D ++K +A V+ L PI+ + + + P + +D +VR
Sbjct: 323 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLN 382
Query: 507 ATQAIQSIDHVM 518
+ ++ V+
Sbjct: 383 IISNLDCVNEVI 394
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 601 bits (1550), Expect = e-172, Method: Compositional matrix adjust.
Identities = 296/515 (57%), Positives = 384/515 (74%), Gaps = 4/515 (0%)
Query: 1 MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
+AE+LG F VGG E+ H LLPPLE+L TVEET VRDKAVESL I + SDL +
Sbjct: 69 LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 128
Query: 61 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
+PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD PMVRR+AAS
Sbjct: 129 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 188
Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
LG+FA +E ++K++I+ +F +L D+QDSVRLLAVE C + +LL +D A ++P +
Sbjct: 189 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 248
Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
++DKSWRVRYMVA++ EL +AVGPE T+ DLVPA+ L++D EAEVR AA+ KV +
Sbjct: 249 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 308
Query: 241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
FC L+ + + + ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+
Sbjct: 309 FCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 368
Query: 297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY+P
Sbjct: 369 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 428
Query: 357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA I P+VL
Sbjct: 429 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 488
Query: 417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++FNVAK LQ +
Sbjct: 489 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 548
Query: 477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
PI+D S ++ ++P L +LT+D DVDV++FA +A+
Sbjct: 549 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 84/402 (20%), Positives = 157/402 (39%), Gaps = 44/402 (10%)
Query: 2 AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYI 61
A +LG F + ++P L + E+ VR AVE+ I + + DL +
Sbjct: 186 ASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVM 245
Query: 62 PLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
P +++ A + + R F + P+I KT+L + L +D VR +A+
Sbjct: 246 PTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHK 305
Query: 121 LGKFAATVEP-----------------------AHLKTDIMSIFEDLT------------ 145
+ +F + H+K+ + S+ L+
Sbjct: 306 VKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHL 365
Query: 146 --------QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVAN 197
+D+ VRL + + +++ + +LP IV ++D WRVR +
Sbjct: 366 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIE 425
Query: 198 QLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 257
+ L +G E L + L D+ +R AA + K E A I+P
Sbjct: 426 YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 485
Query: 258 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 317
V +S D + R I ++ + G+D T + +LP L + D +VR N+ L
Sbjct: 486 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 545
Query: 318 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 359
++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 546 KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 587
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/432 (20%), Positives = 159/432 (36%), Gaps = 47/432 (10%)
Query: 87 YPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ 146
YP A +L ELR+ QL R ++ L A + +++++ D T
Sbjct: 11 YPIA--VLIDELRNEDVQL--------RLNSIKKLSTIALALGVERTRSELLPFLTD-TI 59
Query: 147 DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 206
D+D V L E L+ + V +LP + + + + VR L +
Sbjct: 60 YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEH 119
Query: 207 GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 266
P VP RL + R +A G + C + + L SD +
Sbjct: 120 SPSDLEAHFVPLVKRLAGGDWFTSRTSACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDT 178
Query: 267 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 326
VR A AS + A +L D +++P+F +L DE VRL + + Q++ +
Sbjct: 179 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 238
Query: 327 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 386
L ++P + + AED+ WRVR + + L +G L ++D +
Sbjct: 239 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 298
Query: 387 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 446
R AA++ +K E + +
Sbjct: 299 RAAASHKVKEFCENLSAD-----------------------------------CRENVIM 323
Query: 447 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 506
S++LP + D ++K +A V+ L PI+ + + + P + +D +VR
Sbjct: 324 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLN 383
Query: 507 ATQAIQSIDHVM 518
+ ++ V+
Sbjct: 384 IISNLDCVNEVI 395
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 601 bits (1550), Expect = e-172, Method: Compositional matrix adjust.
Identities = 296/515 (57%), Positives = 384/515 (74%), Gaps = 4/515 (0%)
Query: 1 MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
+AE+LG F VGG E+ H LLPPLE+L TVEET VRDKAVESL I + SDL +
Sbjct: 68 LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 127
Query: 61 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
+PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD PMVRR+AAS
Sbjct: 128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 187
Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
LG+FA +E ++K++I+ +F +L D+QDSVRLLAVE C + +LL +D A ++P +
Sbjct: 188 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 247
Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
++DKSWRVRYMVA++ EL +AVGPE T+ DLVPA+ L++D EAEVR AA+ KV +
Sbjct: 248 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 307
Query: 241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
FC L+ + + + ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+
Sbjct: 308 FCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 367
Query: 297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY+P
Sbjct: 368 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 427
Query: 357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA I P+VL
Sbjct: 428 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 487
Query: 417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++FNVAK LQ +
Sbjct: 488 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 547
Query: 477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
PI+D S ++ ++P L +LT+D DVDV++FA +A+
Sbjct: 548 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 582
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/402 (21%), Positives = 156/402 (38%), Gaps = 44/402 (10%)
Query: 2 AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYI 61
A +LG F + ++P L + E+ VR AVE+ I + + DL +
Sbjct: 185 ASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVM 244
Query: 62 PLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
P +++ A + + R F + P+I KT+L + L +D VR +A+
Sbjct: 245 PTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHK 304
Query: 121 LGKF----AATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI 176
+ +F +A + T I+ ++L D V+ L +L + + H+
Sbjct: 305 VKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHL 364
Query: 177 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIA--- 233
LP+ + +D+ VR + + L + E +G L+PA V L D + VR+A
Sbjct: 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIE 424
Query: 234 ------------------------------------AAGKVTKFCRILNPELAIQHILPC 257
A + K E A I+P
Sbjct: 425 YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 484
Query: 258 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 317
V +S D + R I ++ + G+D T + +LP L + D +VR N+ L
Sbjct: 485 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 544
Query: 318 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 359
++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 545 KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 2/225 (0%)
Query: 294 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 353
+ + + L++E +RLN I KL + +G++ LLP + + D V LA+ E
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 70
Query: 354 YIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 413
+ + +G + L + +RD A +L+ ++ E P H P
Sbjct: 71 QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 130
Query: 414 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 473
V + + R + S+ P + S + + L N D P ++ A L
Sbjct: 131 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLG 189
Query: 474 SLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 518
+++ V+ I P L D VR A +A +I ++
Sbjct: 190 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 601 bits (1550), Expect = e-172, Method: Compositional matrix adjust.
Identities = 296/515 (57%), Positives = 384/515 (74%), Gaps = 4/515 (0%)
Query: 1 MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
+AE+LG F VGG E+ H LLPPLE+L TVEET VRDKAVESL I + SDL +
Sbjct: 69 LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 128
Query: 61 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
+PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD PMVRR+AAS
Sbjct: 129 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASK 188
Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
LG+FA +E ++K++I+ +F +L D+QDSVRLLAVE C + +LL +D A ++P +
Sbjct: 189 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 248
Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
++DKSWRVRYMVA++ EL +AVGPE T+ DLVPA+ L++D EAEVR AA+ KV +
Sbjct: 249 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 308
Query: 241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
FC L+ + + + ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+
Sbjct: 309 FCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 368
Query: 297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY+P
Sbjct: 369 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMP 428
Query: 357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
LLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA I P+VL
Sbjct: 429 LLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 488
Query: 417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++FNVAK LQ +
Sbjct: 489 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 548
Query: 477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
PI+D S ++ ++P L +LT+D DVDV++FA +A+
Sbjct: 549 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/402 (21%), Positives = 156/402 (38%), Gaps = 44/402 (10%)
Query: 2 AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYI 61
A +LG F + ++P L + E+ VR AVE+ I + + DL +
Sbjct: 186 ASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVM 245
Query: 62 PLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
P +++ A + + R F + P+I KT+L + L +D VR +A+
Sbjct: 246 PTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHK 305
Query: 121 LGKF----AATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI 176
+ +F +A + T I+ ++L D V+ L +L + + H+
Sbjct: 306 VKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHL 365
Query: 177 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIA--- 233
LP+ + +D+ VR + + L + E +G L+PA V L D + VR+A
Sbjct: 366 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIE 425
Query: 234 ------------------------------------AAGKVTKFCRILNPELAIQHILPC 257
A + K E A I+P
Sbjct: 426 YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 485
Query: 258 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 317
V +S D + R I ++ + G+D T + +LP L + D +VR N+ L
Sbjct: 486 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 545
Query: 318 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 359
++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 546 KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 587
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 2/225 (0%)
Query: 294 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 353
+ + + L++E +RLN I KL + +G++ LLP + + D V LA+ E
Sbjct: 13 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 71
Query: 354 YIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 413
+ + +G + L + +RD A +L+ ++ E P H P
Sbjct: 72 QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 131
Query: 414 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 473
V + + R + S+ P + S + + L N D P ++ A L
Sbjct: 132 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLG 190
Query: 474 SLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 518
+++ V+ I P L D VR A +A +I ++
Sbjct: 191 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 235
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 582
Score = 581 bits (1497), Expect = e-166, Method: Compositional matrix adjust.
Identities = 290/515 (56%), Positives = 372/515 (72%), Gaps = 4/515 (0%)
Query: 1 MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY 60
+AE+LG F VGG E+ H LLPPLE+L TVEET VRDKAVESL I + SDL +
Sbjct: 62 LAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHF 121
Query: 61 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
+PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD P VRR+AAS
Sbjct: 122 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPXVRRAAASK 181
Query: 121 LGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180
LG+FA +E ++K++I+ F +L D+QDSVRLLAVE C + +LL +D A + P +
Sbjct: 182 LGEFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVXPTL 241
Query: 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240
++DKSWRVRY VA++ EL +AVGPE T+ DLVPA+ L +D EAEVR AA+ KV +
Sbjct: 242 RQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEVRAAASHKVKE 301
Query: 241 FCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296
FC L+ + + ILPC+KEL SD++QHV+SALASVI G++P+LGKD TIE LLP+
Sbjct: 302 FCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGKDNTIEHLLPL 361
Query: 297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356
FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY P
Sbjct: 362 FLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYXP 421
Query: 357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 416
LLA QLGV FFD+KL +LC WL D VY+IR+AA +NLK+L E+FG EWA I P+VL
Sbjct: 422 LLAGQLGVEFFDEKLNSLCXAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLA 481
Query: 417 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476
+P+YL+R T L I++L+ V G +IT LP V+ + D V N++FNVAK LQ +
Sbjct: 482 XSGDPNYLHRXTTLFCINVLSEVCGQDITTKHXLPTVLRXAGDPVANVRFNVAKSLQKIG 541
Query: 477 PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
PI+D S ++ ++P L +LT+D DVDV++FA +A+
Sbjct: 542 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 576
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/402 (20%), Positives = 152/402 (37%), Gaps = 44/402 (10%)
Query: 2 AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYI 61
A +LG F + ++P L + E+ VR AVE+ I + + DL
Sbjct: 179 ASKLGEFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVX 238
Query: 62 PLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASN 120
P +++ A + + R F + P+I KT+L + L +D VR +A+
Sbjct: 239 PTLRQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEVRAAASHK 298
Query: 121 LGKF----AATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI 176
+ +F +A + + I+ ++L D V+ L +L + + H+
Sbjct: 299 VKEFCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGKDNTIEHL 358
Query: 177 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIA--- 233
LP+ + +D+ VR + + L + E +G L+PA V L D + VR+A
Sbjct: 359 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIE 418
Query: 234 ------------------------------------AAGKVTKFCRILNPELAIQHILPC 257
A + K E A I+P
Sbjct: 419 YXPLLAGQLGVEFFDEKLNSLCXAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 478
Query: 258 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 317
V S D + R I ++ + G+D T + LP L D +VR N+ L
Sbjct: 479 VLAXSGDPNYLHRXTTLFCINVLSEVCGQDITTKHXLPTVLRXAGDPVANVRFNVAKSLQ 538
Query: 318 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 359
++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 539 KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 580
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/385 (20%), Positives = 150/385 (38%), Gaps = 6/385 (1%)
Query: 138 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVAN 197
+++ D +++ +RL +++ + + L + + +LP + + D+ V +A
Sbjct: 6 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 64
Query: 198 QLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 257
QL VG L+P L E VR A + +P H +P
Sbjct: 65 QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 124
Query: 258 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 317
VK L+ R++ + P + A +L F +L D+ P VR SKL
Sbjct: 125 VKRLAGGDWFTSRTSACGLFSVCYPRVSS-AVKAELRQYFRNLCSDDTPXVRRAAASKLG 183
Query: 318 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ 377
+ +V+ +D + ++P LA D VRL +E +A L + + Q
Sbjct: 184 EFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVXPTLRQ 243
Query: 378 WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLA 437
+DK + +R A+ L + GPE + P + + R +
Sbjct: 244 AAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEVRAAASHKVKEFC 303
Query: 438 PVMGSE----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLV 493
+ ++ + S++LP + D ++K +A V+ L PI+ + + + P +
Sbjct: 304 ENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGKDNTIEHLLPLFL 363
Query: 494 ELTEDPDVDVRFFATQAIQSIDHVM 518
+D +VR + ++ V+
Sbjct: 364 AQLKDECPEVRLNIISNLDCVNEVI 388
>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 232
Score = 241 bits (615), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 116/218 (53%), Positives = 159/218 (72%)
Query: 294 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 353
+ + + L++E +RLN I KL + +G++ LSQSLLPAIVELAED WRVRLAIIE
Sbjct: 9 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLAIIE 68
Query: 354 YIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 413
Y+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA I P+
Sbjct: 69 YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 128
Query: 414 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 473
VL M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++FNVAK LQ
Sbjct: 129 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 188
Query: 474 SLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511
+ PI+D S ++ ++P L +LT+D DVDV++FA +A+
Sbjct: 189 KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 226
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 101/229 (44%)
Query: 131 AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWR 190
+H+ +++ D +++ +RL +++ + + L + +LP IV ++D WR
Sbjct: 2 SHMSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWR 61
Query: 191 VRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA 250
VR + + L +G E L + L D+ +R AA + K E A
Sbjct: 62 VRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 121
Query: 251 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRL 310
I+P V +S D + R I ++ + G+D T + +LP L + D +VR
Sbjct: 122 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 181
Query: 311 NIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 359
N+ L ++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 182 NVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 230
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 20/180 (11%)
Query: 92 DILKTELRSI--YTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-- 146
DI + L+ I ++ +C ++M + + S A+ G+ + K + + LTQ
Sbjct: 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330
Query: 147 -DDQDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQL 199
++ C A G L D V H+LP I ++ W RY A +
Sbjct: 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYRDAAVM 388
Query: 200 YELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 254
C GPEP+++ +P + L++D VR AA V + C +L PE AI +
Sbjct: 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL-PEAAINDV 447
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 20/180 (11%)
Query: 92 DILKTELRSI--YTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-- 146
DI + L+ I ++ +C ++M + + S A+ G+ + K + + LTQ
Sbjct: 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330
Query: 147 -DDQDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQL 199
++ C A G L D V H+LP I ++ W RY A +
Sbjct: 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYRDAAVM 388
Query: 200 YELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 254
C GPEP+++ +P + L++D VR AA V + C +L PE AI +
Sbjct: 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL-PEAAINDV 447
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 171 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 225
D V H+LP I ++ W RY A + C GPEP+++ +P + L++D
Sbjct: 237 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 294
Query: 226 NEAEVRIAAAGKVTKFCRILNPELAIQHI 254
VR AA V + C +L PE AI +
Sbjct: 295 PSVVVRDTAAWTVGRICELL-PEAAINDV 322
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 171 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 225
D V H+LP I ++ W RY A + C GPEP+++ +P + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 226 NEAEVRIAAAGKVTKFCRILNPELAIQHI 254
VR AA V + C +L PE AI +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 171 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 225
D V H+LP I ++ W RY A + C GPEP+++ +P + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 226 NEAEVRIAAAGKVTKFCRILNPELAIQHI 254
VR AA V + C +L PE AI +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 171 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 225
D V H+LP I ++ WR R + E GPEP ++ +P + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILE--GPEPNQLKPLVIQAMPTLIELMKD 419
Query: 226 NEAEVRIAAAGKVTKFCRILNPELAIQHI 254
VR A V + C +L PE AI +
Sbjct: 420 PSVVVRDTTAWTVGRICELL-PEAAINDV 447
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 171 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 225
D V H+LP I ++ WR R + E GPEP ++ P + L +D
Sbjct: 368 DIVPHVLPFIKEHIKNPDWRYRDAAVXAFGSILE--GPEPNQLKPLVIQAXPTLIELXKD 425
Query: 226 NEAEVRIAAAGKVTKFCRILNPELAIQHI 254
VR A V + C +L PE AI +
Sbjct: 426 PSVVVRDTTAWTVGRICELL-PEAAINDV 453
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 19/171 (11%)
Query: 92 DILKTELRSI--YTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-- 146
DI + L+ I ++ +C ++M + + S A+ G+ + K + + LTQ
Sbjct: 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330
Query: 147 -DDQDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQL 199
++ C A G L D V H+LP I ++ W RY A +
Sbjct: 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYRDAAVM 388
Query: 200 YELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 245
C GPEP+++ +P + L++D VR AA V + C +L
Sbjct: 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439
>pdb|3LTJ|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 201
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 32/178 (17%)
Query: 101 IYTQLCQDDMPMVRRSAASNLGKFA--ATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVE 158
+Y + QDD VRR+AA LGK VEP + + L +D VR A +
Sbjct: 18 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEP---------LIKALKDEDA-WVRRAAAD 67
Query: 159 GCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA 218
ALG++ + + + P+I + W VR A L ++ + EP
Sbjct: 68 ---ALGQIGDER----AVEPLIKALKDEDGW-VRQSAAVALGQIGDERAVEP-------- 111
Query: 219 YVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASV 276
++ L+D + VRIAAA + + + E A++ ++ +K+ Q AL +
Sbjct: 112 LIKALKDEDWFVRIAAAFALGE----IGDERAVEPLIKALKDEDGWVRQSAADALGEI 165
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 15/105 (14%)
Query: 22 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG 81
+ PL E+ VR A +L +IG + PL+K L +WF +A
Sbjct: 78 VEPLIKALKDEDGWVRQSAAVALGQIGDERAVE-------PLIKALKDEDWFVRIAAAFA 130
Query: 82 LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAA 126
L I A + L + +D+ VR+SAA LG+
Sbjct: 131 LGEIGDERAVEPL--------IKALKDEDGWVRQSAADALGEIGG 167
>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
pdb|3LTM|B Chain B, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 211
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 32/178 (17%)
Query: 101 IYTQLCQDDMPMVRRSAASNLGKFA--ATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVE 158
+Y + QDD VRR+AA LGK VEP I ++ +D+ VR A +
Sbjct: 23 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEPL-----IKAL-----KDEDAWVRRAAAD 72
Query: 159 GCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA 218
ALG++ + + + P+I + W VR A L ++ + EP
Sbjct: 73 ---ALGQIGDER----AVEPLIKALKDEDGW-VRQSAAVALGQIGDERAVEP-------- 116
Query: 219 YVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASV 276
++ L+D + VRIAAA + + + E A++ ++ +K+ Q AL +
Sbjct: 117 LIKALKDEDWFVRIAAAFALGE----IGDERAVEPLIKALKDEDGWVRQSAADALGEI 170
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 15/105 (14%)
Query: 22 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG 81
+ PL E+ VR A +L +IG + PL+K L +WF +A
Sbjct: 83 VEPLIKALKDEDGWVRQSAAVALGQIGDERAVE-------PLIKALKDEDWFVRIAAAFA 135
Query: 82 LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAA 126
L I A + L + +D+ VR+SAA LG+
Sbjct: 136 LGEIGDERAVEPL--------IKALKDEDGWVRQSAADALGEIGG 172
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 33/167 (19%)
Query: 223 LRDNEAEVRIAAAGKVTKFCR---ILNPELAIQHILPCVKELSSDSSQHVRSALASVIMG 279
L D A VR A + C+ I +P++ Q + D S +VR A A I
Sbjct: 100 LNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF-----DKSTNVRRATAFAI-- 152
Query: 280 MAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 339
++ ATI P+ ++LLKD DVR N + +N+ D+ VE
Sbjct: 153 --SVINDKATI----PLLINLLKDPNGDVR-NWAAFAININKYDNSDIRD-----CFVEX 200
Query: 340 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDK--LGALCMQWLQDKVY 384
+D++ VR+ I +G+ + DK L LC + ++ VY
Sbjct: 201 LQDKNEEVRIEAI---------IGLSYRKDKRVLSVLCDELKKNTVY 238
>pdb|1B47|A Chain A, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
pdb|1B47|B Chain B, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
pdb|1B47|C Chain C, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
Length = 304
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 237 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 287
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 19 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 66
>pdb|2CBL|A Chain A, N-Terminal Domain Of Cbl In Complex With Its Binding Site
On Zap-70
Length = 305
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 237 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 287
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 19 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 66
>pdb|1YVH|A Chain A, Crystal Structure Of The C-Cbl Tkb Domain In Complex With
The Aps Ptyr-618 Phosphopeptide
pdb|3BUM|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Sprouty2
pdb|3BUN|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Sprouty4
pdb|3BUO|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Egf Receptor'
pdb|3BUO|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Egf Receptor'
pdb|3BUW|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Syk
pdb|3BUW|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Syk
pdb|3BUX|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In C-Met
pdb|3BUX|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In C-Met
pdb|3OB1|B Chain B, Crystal Structure Of C-Cbl Tkb Domain In Complex With
Double Phosphorylated Spry2 Peptide
pdb|3OB2|B Chain B, Crystal Structure Of C-Cbl Tkb Domain In Complex With
Double Phosphorylated Egfr Peptide
pdb|3PLF|B Chain B, Reverse Binding Mode Of Metrd Peptide Complexed With C-Cbl
Tkb Domain
pdb|3PLF|D Chain D, Reverse Binding Mode Of Metrd Peptide Complexed With C-Cbl
Tkb Domain
Length = 329
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 237 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 287
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 43 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 90
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 237 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 287
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 19 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 66
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 237 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 287
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 19 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 66
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 237 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 287
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 21 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 68
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 237 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 287
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 21 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,049,776
Number of Sequences: 62578
Number of extensions: 543180
Number of successful extensions: 1578
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1306
Number of HSP's gapped (non-prelim): 99
length of query: 521
length of database: 14,973,337
effective HSP length: 103
effective length of query: 418
effective length of database: 8,527,803
effective search space: 3564621654
effective search space used: 3564621654
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)