Query 009975
Match_columns 521
No_of_seqs 243 out of 2131
Neff 11.2
Searched_HMMs 46136
Date Thu Mar 28 19:33:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0211 Protein phosphatase 2A 100.0 1.2E-47 2.5E-52 374.1 41.5 519 1-519 140-667 (759)
2 KOG0211 Protein phosphatase 2A 100.0 2.2E-33 4.8E-38 274.4 31.1 497 22-519 84-628 (759)
3 KOG2023 Nuclear transport rece 100.0 9.6E-31 2.1E-35 241.6 34.4 502 13-519 121-735 (885)
4 KOG2171 Karyopherin (importin) 100.0 6.5E-28 1.4E-32 237.9 47.2 487 21-516 6-549 (1075)
5 KOG2171 Karyopherin (importin) 100.0 3.5E-25 7.5E-30 218.8 48.4 471 23-494 83-613 (1075)
6 KOG2023 Nuclear transport rece 100.0 9.5E-26 2.1E-30 208.8 28.8 495 15-520 9-595 (885)
7 KOG1241 Karyopherin (importin) 99.9 2.3E-23 5E-28 196.3 39.6 497 18-516 127-711 (859)
8 KOG0213 Splicing factor 3b, su 99.9 3.2E-21 7E-26 181.0 38.7 472 30-515 486-1064(1172)
9 KOG1241 Karyopherin (importin) 99.9 1.6E-19 3.5E-24 170.7 41.6 492 22-520 4-588 (859)
10 KOG0213 Splicing factor 3b, su 99.9 8.5E-20 1.8E-24 171.6 38.7 486 16-514 549-1140(1172)
11 PF01602 Adaptin_N: Adaptin N 99.9 2.1E-20 4.6E-25 187.7 34.8 473 20-515 42-523 (526)
12 COG5181 HSH155 U2 snRNP splice 99.9 1.3E-19 2.9E-24 167.1 33.8 473 30-515 291-869 (975)
13 KOG1242 Protein containing ada 99.9 5.7E-19 1.2E-23 164.9 38.0 482 22-509 19-516 (569)
14 KOG1824 TATA-binding protein-i 99.9 2.5E-18 5.3E-23 166.0 43.2 501 16-518 43-724 (1233)
15 PLN03200 cellulose synthase-in 99.9 1.1E-18 2.5E-23 186.6 42.6 493 21-518 190-766 (2102)
16 KOG1242 Protein containing ada 99.9 7.1E-19 1.5E-23 164.3 34.7 413 101-519 21-447 (569)
17 PRK13800 putative oxidoreducta 99.9 3E-20 6.4E-25 194.3 26.8 275 176-513 622-896 (897)
18 PRK09687 putative lyase; Provi 99.9 5.4E-20 1.2E-24 164.4 23.2 254 215-513 24-279 (280)
19 PLN03200 cellulose synthase-in 99.9 6.7E-18 1.5E-22 180.8 40.1 472 34-516 297-811 (2102)
20 COG5215 KAP95 Karyopherin (imp 99.9 4E-17 8.6E-22 149.7 38.6 513 3-517 116-712 (858)
21 PF01602 Adaptin_N: Adaptin N 99.9 1.6E-18 3.4E-23 174.2 32.1 441 18-477 77-524 (526)
22 COG5181 HSH155 U2 snRNP splice 99.9 1.8E-17 3.9E-22 153.2 35.6 480 16-512 354-943 (975)
23 PRK13800 putative oxidoreducta 99.8 7.9E-19 1.7E-23 183.6 28.0 274 138-474 623-896 (897)
24 PRK09687 putative lyase; Provi 99.8 6.5E-19 1.4E-23 157.4 23.5 255 175-474 23-279 (280)
25 KOG0212 Uncharacterized conser 99.8 7.3E-17 1.6E-21 147.9 29.6 396 102-498 5-427 (675)
26 PTZ00429 beta-adaptin; Provisi 99.8 4.5E-15 9.7E-20 148.5 43.9 462 22-511 70-541 (746)
27 KOG1824 TATA-binding protein-i 99.8 2.9E-15 6.2E-20 145.2 40.0 429 90-519 40-602 (1233)
28 KOG0212 Uncharacterized conser 99.8 4.3E-15 9.4E-20 136.4 37.0 444 27-475 7-478 (675)
29 COG5215 KAP95 Karyopherin (imp 99.8 1.4E-14 3E-19 133.3 39.8 468 25-518 10-531 (858)
30 KOG0915 Uncharacterized conser 99.8 4.9E-15 1.1E-19 150.5 38.1 497 18-520 816-1431(1702)
31 KOG1240 Protein kinase contain 99.8 9.9E-17 2.1E-21 159.0 25.0 298 150-457 437-744 (1431)
32 KOG0915 Uncharacterized conser 99.8 1.8E-15 3.8E-20 153.7 31.5 336 175-512 956-1340(1702)
33 PTZ00429 beta-adaptin; Provisi 99.8 1.1E-13 2.5E-18 138.5 43.0 366 95-479 66-435 (746)
34 KOG0166 Karyopherin (importin) 99.7 1.3E-13 2.7E-18 128.9 30.7 338 139-478 69-437 (514)
35 KOG1240 Protein kinase contain 99.7 1.9E-15 4E-20 150.1 18.9 257 228-484 437-732 (1431)
36 KOG0166 Karyopherin (importin) 99.7 4.9E-14 1.1E-18 131.6 25.8 341 177-517 68-437 (514)
37 KOG1943 Beta-tubulin folding c 99.6 4.7E-10 1E-14 111.7 44.9 423 94-519 338-840 (1133)
38 KOG4224 Armadillo repeat prote 99.6 8.5E-13 1.8E-17 115.3 22.0 382 96-516 84-493 (550)
39 PF10508 Proteasom_PSMB: Prote 99.6 5.2E-11 1.1E-15 116.7 36.7 376 141-516 43-462 (503)
40 KOG1060 Vesicle coat complex A 99.6 3.6E-11 7.8E-16 115.3 33.4 455 25-508 40-563 (968)
41 PF10508 Proteasom_PSMB: Prote 99.5 2.3E-10 5E-15 112.3 37.9 391 62-476 41-461 (503)
42 KOG1060 Vesicle coat complex A 99.5 3.5E-10 7.5E-15 108.7 32.1 384 66-478 42-459 (968)
43 KOG1943 Beta-tubulin folding c 99.5 3.2E-09 7E-14 105.9 39.5 461 16-478 337-882 (1133)
44 COG5240 SEC21 Vesicle coat com 99.5 7.8E-10 1.7E-14 102.7 32.8 472 21-515 66-554 (898)
45 KOG4224 Armadillo repeat prote 99.5 2.1E-11 4.6E-16 106.7 20.8 371 67-439 93-494 (550)
46 COG5240 SEC21 Vesicle coat com 99.4 6.5E-10 1.4E-14 103.2 28.8 422 32-476 114-554 (898)
47 KOG1061 Vesicle coat complex A 99.4 1.2E-09 2.5E-14 105.7 29.9 467 21-508 14-520 (734)
48 KOG1248 Uncharacterized conser 99.4 2E-07 4.3E-12 94.6 46.5 345 172-519 515-901 (1176)
49 COG1413 FOG: HEAT repeat [Ener 99.4 3.6E-10 7.7E-15 106.4 25.3 278 175-514 43-333 (335)
50 COG5064 SRP1 Karyopherin (impo 99.3 7.7E-11 1.7E-15 102.3 16.2 304 213-516 113-443 (526)
51 KOG1062 Vesicle coat complex A 99.3 3.5E-08 7.5E-13 95.7 35.0 399 75-509 123-574 (866)
52 COG1413 FOG: HEAT repeat [Ener 99.3 6.5E-10 1.4E-14 104.7 23.1 249 214-516 43-304 (335)
53 COG5064 SRP1 Karyopherin (impo 99.3 1.2E-09 2.6E-14 95.1 22.3 303 176-478 115-444 (526)
54 KOG1020 Sister chromatid cohes 99.3 1.4E-07 2.9E-12 97.7 40.1 491 23-517 819-1406(1692)
55 KOG2259 Uncharacterized conser 99.3 1.6E-09 3.4E-14 102.4 23.1 301 186-500 169-500 (823)
56 PF12348 CLASP_N: CLASP N term 99.3 4.3E-10 9.4E-15 99.5 18.6 187 330-519 6-209 (228)
57 KOG1243 Protein kinase [Genera 99.3 1.2E-10 2.6E-15 111.3 15.6 253 264-518 265-517 (690)
58 TIGR02270 conserved hypothetic 99.3 1.8E-09 4E-14 101.5 23.1 241 175-476 54-295 (410)
59 KOG1062 Vesicle coat complex A 99.2 1.8E-07 3.9E-12 91.0 34.6 250 215-475 314-579 (866)
60 KOG2259 Uncharacterized conser 99.2 1.5E-08 3.2E-13 96.0 26.6 238 151-396 173-472 (823)
61 TIGR02270 conserved hypothetic 99.2 5E-09 1.1E-13 98.6 22.9 242 135-437 53-295 (410)
62 KOG1078 Vesicle coat complex C 99.2 6.1E-08 1.3E-12 93.8 30.0 288 173-476 243-531 (865)
63 KOG1991 Nuclear transport rece 99.2 9.7E-06 2.1E-10 81.2 45.3 418 31-460 15-559 (1010)
64 KOG1059 Vesicle coat complex A 99.2 6.5E-06 1.4E-10 79.4 40.6 219 131-360 139-365 (877)
65 PF12348 CLASP_N: CLASP N term 99.1 4.4E-09 9.6E-14 93.0 18.2 188 292-482 7-211 (228)
66 KOG1061 Vesicle coat complex A 99.1 6.6E-08 1.4E-12 93.9 25.2 431 24-476 90-527 (734)
67 KOG1059 Vesicle coat complex A 99.1 8.6E-07 1.9E-11 85.2 32.1 400 58-475 143-575 (877)
68 KOG1991 Nuclear transport rece 99.1 1.2E-05 2.7E-10 80.5 40.2 407 97-516 5-532 (1010)
69 KOG1078 Vesicle coat complex C 99.1 8.2E-07 1.8E-11 86.2 31.2 460 21-515 65-531 (865)
70 KOG1243 Protein kinase [Genera 99.1 4.5E-09 9.7E-14 100.8 15.3 254 225-480 265-518 (690)
71 KOG1020 Sister chromatid cohes 99.0 4.8E-06 1E-10 86.7 36.5 406 96-504 815-1281(1692)
72 COG5096 Vesicle coat complex, 99.0 8E-06 1.7E-10 81.3 36.3 143 95-244 53-196 (757)
73 KOG1248 Uncharacterized conser 99.0 5.4E-05 1.2E-09 77.6 44.2 456 22-485 393-906 (1176)
74 KOG1820 Microtubule-associated 99.0 2.4E-07 5.3E-12 93.4 23.9 193 289-485 250-451 (815)
75 KOG1820 Microtubule-associated 99.0 6.3E-08 1.4E-12 97.6 19.7 359 136-520 63-447 (815)
76 KOG1077 Vesicle coat complex A 98.9 1.7E-05 3.8E-10 76.3 33.5 242 108-365 159-438 (938)
77 PF12460 MMS19_C: RNAPII trans 98.9 1.5E-05 3.4E-10 76.9 33.7 304 188-494 56-413 (415)
78 COG5096 Vesicle coat complex, 98.9 4E-06 8.6E-11 83.4 27.4 168 145-322 28-196 (757)
79 PF12460 MMS19_C: RNAPII trans 98.8 1.4E-05 3E-10 77.2 30.7 278 111-416 111-413 (415)
80 KOG0413 Uncharacterized conser 98.8 2.1E-05 4.6E-10 78.3 30.9 478 20-516 472-1073(1529)
81 KOG2137 Protein kinase [Signal 98.8 5.4E-07 1.2E-11 87.3 19.6 236 265-503 285-524 (700)
82 KOG2032 Uncharacterized conser 98.8 6E-05 1.3E-09 70.0 31.5 258 252-516 257-531 (533)
83 KOG1992 Nuclear export recepto 98.8 0.0001 2.3E-09 72.5 34.6 456 21-518 7-529 (960)
84 KOG1058 Vesicle coat complex C 98.8 0.00011 2.4E-09 71.6 33.6 354 139-515 102-462 (948)
85 PF12755 Vac14_Fab1_bd: Vacuol 98.8 1.1E-07 2.3E-12 69.7 10.1 83 426-508 3-89 (97)
86 KOG1058 Vesicle coat complex C 98.8 4.2E-05 9.1E-10 74.4 29.5 213 213-438 242-463 (948)
87 PF05804 KAP: Kinesin-associat 98.7 5E-05 1.1E-09 76.3 30.9 354 155-517 268-650 (708)
88 KOG4535 HEAT and armadillo rep 98.7 1.7E-05 3.7E-10 73.1 24.9 286 228-513 269-600 (728)
89 KOG2032 Uncharacterized conser 98.7 9.5E-05 2.1E-09 68.7 28.7 254 135-398 257-530 (533)
90 KOG0567 HEAT repeat-containing 98.7 8.2E-06 1.8E-10 69.3 19.7 221 255-515 38-279 (289)
91 PF05804 KAP: Kinesin-associat 98.6 7.4E-05 1.6E-09 75.2 28.9 360 109-478 262-650 (708)
92 KOG2137 Protein kinase [Signal 98.6 4.6E-06 9.9E-11 81.0 19.2 234 228-464 287-524 (700)
93 PF12755 Vac14_Fab1_bd: Vacuol 98.6 4.9E-07 1.1E-11 66.2 9.8 89 230-319 2-94 (97)
94 KOG1992 Nuclear export recepto 98.6 0.00043 9.4E-09 68.4 32.0 461 19-481 87-672 (960)
95 KOG0168 Putative ubiquitin fus 98.6 0.00036 7.7E-09 69.2 30.4 398 96-498 167-654 (1051)
96 PF13646 HEAT_2: HEAT repeats; 98.6 9.3E-07 2E-11 64.9 10.3 84 256-355 2-87 (88)
97 PF13646 HEAT_2: HEAT repeats; 98.5 5.9E-07 1.3E-11 65.9 8.8 85 217-317 2-88 (88)
98 KOG1077 Vesicle coat complex A 98.5 0.0003 6.5E-09 68.2 28.2 294 139-442 114-437 (938)
99 KOG2062 26S proteasome regulat 98.5 0.00016 3.5E-09 70.3 26.3 252 109-386 426-681 (929)
100 PF12717 Cnd1: non-SMC mitotic 98.5 2.1E-05 4.5E-10 66.1 17.9 109 150-261 2-110 (178)
101 KOG0414 Chromosome condensatio 98.5 0.0022 4.8E-08 66.2 34.4 159 352-516 898-1064(1251)
102 KOG1293 Proteins containing ar 98.5 0.0016 3.5E-08 63.0 31.6 399 77-477 71-533 (678)
103 KOG4535 HEAT and armadillo rep 98.5 2.5E-05 5.5E-10 71.9 18.8 409 29-441 116-606 (728)
104 cd00020 ARM Armadillo/beta-cat 98.5 1.1E-06 2.3E-11 69.0 9.0 108 408-515 6-119 (120)
105 KOG1293 Proteins containing ar 98.5 0.0017 3.7E-08 62.8 32.2 415 99-514 53-531 (678)
106 PF12717 Cnd1: non-SMC mitotic 98.5 1.2E-05 2.6E-10 67.5 15.7 113 33-147 1-113 (178)
107 PF04826 Arm_2: Armadillo-like 98.5 9.6E-06 2.1E-10 71.4 15.6 190 97-286 13-209 (254)
108 KOG0567 HEAT repeat-containing 98.4 0.0001 2.2E-09 62.9 20.1 219 101-359 40-279 (289)
109 KOG2025 Chromosome condensatio 98.4 0.00018 3.8E-09 69.8 24.1 227 268-513 61-291 (892)
110 KOG2025 Chromosome condensatio 98.4 0.0001 2.2E-09 71.5 22.5 105 172-278 82-189 (892)
111 cd00020 ARM Armadillo/beta-cat 98.4 2.4E-06 5.2E-11 67.0 10.2 107 370-476 7-119 (120)
112 KOG2062 26S proteasome regulat 98.4 4.5E-05 9.8E-10 74.0 20.1 131 293-437 520-652 (929)
113 PF13001 Ecm29: Proteasome sta 98.4 0.00018 3.9E-09 71.0 25.0 408 18-439 21-489 (501)
114 PF13001 Ecm29: Proteasome sta 98.4 0.00031 6.7E-09 69.4 26.4 406 95-513 21-485 (501)
115 PF05918 API5: Apoptosis inhib 98.4 0.00065 1.4E-08 66.0 27.2 287 217-512 26-337 (556)
116 PF04826 Arm_2: Armadillo-like 98.4 6.5E-05 1.4E-09 66.2 18.9 189 214-402 12-208 (254)
117 KOG2274 Predicted importin 9 [ 98.4 0.0037 7.9E-08 62.8 38.1 490 20-518 5-604 (1005)
118 KOG4413 26S proteasome regulat 98.4 0.00062 1.4E-08 60.0 24.1 317 156-477 63-439 (524)
119 KOG4413 26S proteasome regulat 98.4 0.0014 3.1E-08 57.8 28.1 333 81-438 65-439 (524)
120 PF05918 API5: Apoptosis inhib 98.4 0.0014 3.1E-08 63.7 28.8 283 149-439 35-346 (556)
121 KOG2956 CLIP-associating prote 98.4 5.4E-05 1.2E-09 69.8 18.1 187 95-285 285-480 (516)
122 PLN03076 ARF guanine nucleotid 98.3 0.00077 1.7E-08 74.8 29.2 289 114-403 1109-1493(1780)
123 KOG1967 DNA repair/transcripti 98.3 0.0049 1.1E-07 62.1 31.1 150 326-475 862-1022(1030)
124 KOG0168 Putative ubiquitin fus 98.3 0.0026 5.7E-08 63.3 28.7 197 21-224 169-390 (1051)
125 KOG2274 Predicted importin 9 [ 98.3 0.0062 1.3E-07 61.3 41.9 212 304-516 462-689 (1005)
126 KOG4653 Uncharacterized conser 98.2 0.0002 4.3E-09 71.1 20.3 178 259-442 733-922 (982)
127 KOG4653 Uncharacterized conser 98.2 0.00041 8.9E-09 68.9 21.7 221 294-519 729-967 (982)
128 KOG2956 CLIP-associating prote 98.2 0.00037 7.9E-09 64.5 20.0 181 301-485 296-485 (516)
129 PF05004 IFRD: Interferon-rela 98.2 0.0026 5.7E-08 58.3 24.8 204 296-499 47-285 (309)
130 KOG1949 Uncharacterized conser 98.1 0.0064 1.4E-07 59.4 26.5 182 139-320 133-330 (1005)
131 PF13513 HEAT_EZ: HEAT-like re 98.1 7.1E-06 1.5E-10 53.7 4.8 52 423-474 1-54 (55)
132 KOG1525 Sister chromatid cohes 98.1 0.0015 3.3E-08 69.8 23.9 325 27-361 57-406 (1266)
133 COG5218 YCG1 Chromosome conden 98.0 0.013 2.9E-07 56.1 29.5 221 43-279 30-263 (885)
134 PF05004 IFRD: Interferon-rela 98.0 0.0017 3.7E-08 59.5 21.2 181 339-519 51-260 (309)
135 PF13513 HEAT_EZ: HEAT-like re 98.0 2.4E-05 5.2E-10 51.1 6.4 53 267-319 1-55 (55)
136 KOG0413 Uncharacterized conser 98.0 0.028 6.2E-07 57.1 37.2 145 307-456 946-1091(1529)
137 PF14500 MMS19_N: Dos2-interac 98.0 0.0045 9.7E-08 55.2 21.7 226 262-492 8-252 (262)
138 KOG1822 Uncharacterized conser 97.9 0.055 1.2E-06 59.3 36.2 279 77-355 802-1122(2067)
139 KOG1851 Uncharacterized conser 97.9 0.037 8.1E-07 59.4 30.2 148 330-479 1525-1680(1710)
140 KOG1949 Uncharacterized conser 97.9 0.0038 8.3E-08 60.9 20.9 146 254-400 175-332 (1005)
141 KOG1967 DNA repair/transcripti 97.9 0.00028 6.1E-09 70.5 13.4 144 55-198 863-1018(1030)
142 PF08506 Cse1: Cse1; InterPro 97.9 0.0046 1E-07 58.1 20.9 126 383-511 224-370 (370)
143 KOG1525 Sister chromatid cohes 97.8 0.014 3E-07 62.7 26.3 326 183-516 58-405 (1266)
144 PF12719 Cnd3: Nuclear condens 97.8 0.008 1.7E-07 55.4 21.6 160 179-340 31-206 (298)
145 PF14500 MMS19_N: Dos2-interac 97.8 0.01 2.2E-07 52.9 21.4 222 25-250 4-244 (262)
146 PF02985 HEAT: HEAT repeat; I 97.8 4.3E-05 9.4E-10 42.7 4.0 29 371-399 1-29 (31)
147 PF01347 Vitellogenin_N: Lipop 97.8 0.0035 7.6E-08 64.6 20.8 163 331-512 431-618 (618)
148 PF02985 HEAT: HEAT repeat; I 97.8 4.1E-05 8.8E-10 42.9 3.4 28 450-477 2-29 (31)
149 COG5218 YCG1 Chromosome conden 97.7 0.052 1.1E-06 52.3 28.4 212 131-356 41-262 (885)
150 COG5116 RPN2 26S proteasome re 97.7 0.0014 3.1E-08 62.2 14.3 93 145-246 561-653 (926)
151 PLN03076 ARF guanine nucleotid 97.7 0.043 9.3E-07 61.7 27.7 245 96-341 1181-1512(1780)
152 KOG0414 Chromosome condensatio 97.6 0.11 2.5E-06 54.3 33.9 150 323-478 911-1065(1251)
153 COG5116 RPN2 26S proteasome re 97.6 0.0075 1.6E-07 57.5 18.0 248 110-383 424-675 (926)
154 PF12719 Cnd3: Nuclear condens 97.6 0.043 9.4E-07 50.5 23.2 214 299-515 34-284 (298)
155 PF01347 Vitellogenin_N: Lipop 97.6 0.017 3.8E-07 59.6 22.9 230 95-354 361-616 (618)
156 COG5098 Chromosome condensatio 97.6 0.093 2E-06 51.7 39.3 140 371-516 893-1037(1128)
157 smart00638 LPD_N Lipoprotein N 97.6 0.012 2.5E-07 60.2 20.8 215 267-511 340-573 (574)
158 KOG1517 Guanine nucleotide bin 97.4 0.0074 1.6E-07 61.7 15.4 207 308-515 486-731 (1387)
159 COG5656 SXM1 Importin, protein 97.4 0.19 4.2E-06 50.0 37.5 411 96-516 3-528 (970)
160 KOG1993 Nuclear transport rece 97.3 0.21 4.6E-06 50.1 36.5 181 328-510 485-679 (978)
161 KOG2933 Uncharacterized conser 97.3 0.012 2.6E-07 51.9 14.3 174 214-391 88-269 (334)
162 KOG1517 Guanine nucleotide bin 97.3 0.01 2.3E-07 60.7 15.6 209 270-478 487-733 (1387)
163 PF08506 Cse1: Cse1; InterPro 97.3 0.062 1.3E-06 50.7 19.8 127 344-472 224-370 (370)
164 smart00638 LPD_N Lipoprotein N 97.2 0.025 5.4E-07 57.7 18.4 137 370-514 393-543 (574)
165 PF11864 DUF3384: Domain of un 97.2 0.29 6.3E-06 48.2 30.9 303 34-364 4-335 (464)
166 KOG0889 Histone acetyltransfer 97.1 1 2.2E-05 53.3 36.6 282 213-496 983-1328(3550)
167 KOG0891 DNA-dependent protein 97.1 0.99 2.1E-05 52.5 35.8 493 17-519 525-1044(2341)
168 PF12530 DUF3730: Protein of u 97.0 0.2 4.3E-06 44.2 21.5 194 104-305 8-216 (234)
169 PF12530 DUF3730: Protein of u 97.0 0.13 2.8E-06 45.4 18.4 166 27-200 8-185 (234)
170 PF11864 DUF3384: Domain of un 97.0 0.41 9E-06 47.2 29.7 142 172-320 173-329 (464)
171 KOG0392 SNF2 family DNA-depend 97.0 0.028 6.2E-07 58.9 15.1 171 306-478 143-326 (1549)
172 KOG2933 Uncharacterized conser 96.9 0.05 1.1E-06 48.2 14.3 138 338-480 95-237 (334)
173 KOG0946 ER-Golgi vesicle-tethe 96.9 0.59 1.3E-05 47.1 32.7 357 95-472 20-432 (970)
174 PF10363 DUF2435: Protein of u 96.8 0.024 5.2E-07 41.1 9.5 83 99-186 5-88 (92)
175 KOG2011 Sister chromatid cohes 96.8 0.5 1.1E-05 49.8 22.2 130 376-510 293-429 (1048)
176 KOG2160 Armadillo/beta-catenin 96.7 0.18 3.9E-06 46.0 16.2 173 73-245 97-284 (342)
177 PF10274 ParcG: Parkin co-regu 96.6 0.066 1.4E-06 44.1 12.0 116 369-484 37-171 (183)
178 KOG1822 Uncharacterized conser 96.6 1.7 3.8E-05 48.5 36.3 284 35-319 799-1125(2067)
179 PF10363 DUF2435: Protein of u 96.5 0.048 1E-06 39.6 9.8 81 336-421 8-89 (92)
180 COG5098 Chromosome condensatio 96.5 1 2.2E-05 44.8 26.7 109 138-246 301-418 (1128)
181 KOG0392 SNF2 family DNA-depend 96.5 0.47 1E-05 50.4 19.6 169 231-402 750-928 (1549)
182 PF14664 RICTOR_N: Rapamycin-i 96.4 0.85 1.9E-05 43.2 21.0 230 17-246 22-272 (371)
183 PF03378 CAS_CSE1: CAS/CSE pro 96.4 0.79 1.7E-05 44.4 20.3 215 149-365 43-277 (435)
184 KOG2021 Nuclear mRNA export fa 96.4 1.3 2.8E-05 44.6 42.5 269 229-502 414-750 (980)
185 KOG2213 Apoptosis inhibitor 5/ 96.3 0.87 1.9E-05 42.0 19.7 66 76-146 41-106 (460)
186 PF13251 DUF4042: Domain of un 96.3 0.15 3.2E-06 42.4 12.5 126 374-516 44-174 (182)
187 COG5234 CIN1 Beta-tubulin fold 96.3 1.3 2.9E-05 44.1 20.3 147 94-242 243-415 (993)
188 cd00256 VATPase_H VATPase_H, r 96.2 1.2 2.6E-05 42.8 26.4 196 38-243 52-258 (429)
189 KOG2160 Armadillo/beta-catenin 96.2 0.6 1.3E-05 42.7 16.7 175 31-206 94-284 (342)
190 PF05536 Neurochondrin: Neuroc 96.2 1.6 3.6E-05 43.8 28.4 177 149-328 70-268 (543)
191 PF03224 V-ATPase_H_N: V-ATPas 96.2 0.98 2.1E-05 42.0 19.0 170 336-505 110-303 (312)
192 PF13251 DUF4042: Domain of un 96.1 0.094 2E-06 43.6 10.7 168 230-438 2-174 (182)
193 KOG1851 Uncharacterized conser 96.1 2.9 6.2E-05 46.0 34.5 152 366-518 1522-1680(1710)
194 COG5234 CIN1 Beta-tubulin fold 96.1 1.7 3.7E-05 43.4 23.1 196 1-204 266-491 (993)
195 cd00256 VATPase_H VATPase_H, r 96.1 1.4 3.1E-05 42.2 28.0 68 449-516 354-425 (429)
196 KOG2021 Nuclear mRNA export fa 96.0 2 4.4E-05 43.3 42.9 455 32-496 17-585 (980)
197 PF08713 DNA_alkylation: DNA a 96.0 0.93 2E-05 39.4 17.0 134 135-283 50-185 (213)
198 PF12074 DUF3554: Domain of un 95.9 0.87 1.9E-05 43.0 17.8 57 186-243 34-90 (339)
199 PF12074 DUF3554: Domain of un 95.9 1.2 2.5E-05 42.1 18.6 216 270-495 4-252 (339)
200 PF10274 ParcG: Parkin co-regu 95.9 0.19 4.2E-06 41.5 11.3 87 212-298 36-130 (183)
201 cd08050 TAF6 TATA Binding Prot 95.8 0.25 5.4E-06 46.3 13.4 132 299-437 185-339 (343)
202 COG5537 IRR1 Cohesin [Cell div 95.8 0.81 1.8E-05 44.7 16.2 145 371-518 276-424 (740)
203 PF01603 B56: Protein phosphat 95.7 2.1 4.6E-05 41.4 23.5 31 291-321 132-162 (409)
204 KOG0946 ER-Golgi vesicle-tethe 95.7 2.8 6E-05 42.7 32.8 157 27-204 30-195 (970)
205 COG5656 SXM1 Importin, protein 95.7 2.7 5.8E-05 42.5 40.2 422 31-462 14-556 (970)
206 KOG2213 Apoptosis inhibitor 5/ 95.7 1.8 3.8E-05 40.1 20.6 242 270-519 41-317 (460)
207 PF11865 DUF3385: Domain of un 95.7 0.1 2.3E-06 42.7 9.1 74 404-477 81-157 (160)
208 PF08161 NUC173: NUC173 domain 95.7 0.44 9.5E-06 40.5 13.0 162 349-514 18-197 (198)
209 cd08050 TAF6 TATA Binding Prot 95.7 0.34 7.3E-06 45.4 13.5 141 95-242 176-339 (343)
210 PF12054 DUF3535: Domain of un 95.6 2.6 5.6E-05 41.1 20.3 76 151-226 102-180 (441)
211 PF11701 UNC45-central: Myosin 95.5 0.062 1.3E-06 43.9 7.3 130 31-161 16-155 (157)
212 KOG0889 Histone acetyltransfer 95.5 7.9 0.00017 46.6 28.1 153 369-521 983-1160(3550)
213 KOG2011 Sister chromatid cohes 95.5 4.4 9.5E-05 43.2 23.2 129 341-474 297-432 (1048)
214 PF10521 DUF2454: Protein of u 95.4 0.51 1.1E-05 43.0 13.6 40 422-461 237-278 (282)
215 PF12231 Rif1_N: Rap1-interact 95.3 2.9 6.3E-05 39.9 25.7 171 95-284 131-305 (372)
216 PF11865 DUF3385: Domain of un 95.2 0.15 3.3E-06 41.8 8.5 147 369-519 9-160 (160)
217 KOG1848 Uncharacterized conser 95.2 1.3 2.9E-05 47.7 16.7 218 103-320 848-1131(1610)
218 PF14664 RICTOR_N: Rapamycin-i 95.1 3.2 6.9E-05 39.4 22.8 149 133-281 22-175 (371)
219 KOG2973 Uncharacterized conser 95.0 2.5 5.4E-05 37.9 19.1 101 101-204 7-111 (353)
220 KOG2973 Uncharacterized conser 95.0 2.6 5.6E-05 37.8 19.0 59 458-516 254-315 (353)
221 PF08569 Mo25: Mo25-like; Int 94.9 3.2 6.9E-05 38.7 25.9 205 289-499 73-313 (335)
222 PF08713 DNA_alkylation: DNA a 94.9 0.61 1.3E-05 40.6 12.2 145 58-221 50-196 (213)
223 PF04118 Dopey_N: Dopey, N-ter 94.9 3.1 6.7E-05 38.2 22.0 179 293-477 55-254 (307)
224 KOG2549 Transcription initiati 94.9 2 4.3E-05 41.7 15.7 134 298-438 213-370 (576)
225 PF14868 DUF4487: Domain of un 94.8 5 0.00011 40.1 24.7 62 113-175 244-305 (559)
226 PF01603 B56: Protein phosphat 94.7 4.4 9.5E-05 39.3 23.9 95 389-484 274-376 (409)
227 PF12054 DUF3535: Domain of un 94.6 4.9 0.00011 39.2 21.2 76 111-186 101-179 (441)
228 PF08167 RIX1: rRNA processing 94.6 1.7 3.7E-05 35.9 13.2 112 368-481 23-147 (165)
229 PF03378 CAS_CSE1: CAS/CSE pro 94.3 5.6 0.00012 38.7 21.9 192 94-288 68-278 (435)
230 PF08389 Xpo1: Exportin 1-like 94.3 1 2.2E-05 36.3 11.5 141 111-277 2-148 (148)
231 PF08767 CRM1_C: CRM1 C termin 94.3 4.6 9.9E-05 37.6 19.0 74 330-403 116-198 (319)
232 KOG3678 SARM protein (with ste 94.1 4.6 0.0001 38.4 16.0 143 23-166 183-337 (832)
233 KOG2149 Uncharacterized conser 94.1 1.2 2.6E-05 41.5 12.1 109 376-484 64-177 (393)
234 PF08767 CRM1_C: CRM1 C termin 94.0 5.1 0.00011 37.3 18.9 155 346-500 42-227 (319)
235 KOG2549 Transcription initiati 94.0 3.1 6.6E-05 40.5 15.0 142 95-243 205-370 (576)
236 cd03568 VHS_STAM VHS domain fa 93.9 0.7 1.5E-05 37.0 9.2 75 407-481 35-114 (144)
237 PF07571 DUF1546: Protein of u 93.9 0.3 6.5E-06 35.6 6.5 68 381-452 17-88 (92)
238 PF11701 UNC45-central: Myosin 93.8 0.41 9E-06 39.1 8.1 132 381-513 16-156 (157)
239 PF10521 DUF2454: Protein of u 93.8 5.3 0.00012 36.5 19.6 133 290-422 117-278 (282)
240 KOG2038 CAATT-binding transcri 93.7 9.2 0.0002 39.0 25.5 70 250-321 301-370 (988)
241 KOG2081 Nuclear transport regu 93.5 8 0.00017 37.9 36.6 387 94-516 60-495 (559)
242 PF08161 NUC173: NUC173 domain 93.5 1.7 3.8E-05 36.9 11.4 44 290-334 39-82 (198)
243 cd03569 VHS_Hrs_Vps27p VHS dom 93.4 1.9 4.2E-05 34.4 10.9 76 407-482 39-119 (142)
244 PF08167 RIX1: rRNA processing 93.3 4 8.7E-05 33.7 13.2 58 187-246 80-146 (165)
245 PF12830 Nipped-B_C: Sister ch 93.2 1.3 2.9E-05 37.4 10.5 71 407-479 6-76 (187)
246 COG5537 IRR1 Cohesin [Cell div 93.2 3.9 8.4E-05 40.3 14.2 209 19-243 209-422 (740)
247 cd03567 VHS_GGA VHS domain fam 93.2 2.7 5.8E-05 33.4 11.3 73 408-480 37-119 (139)
248 KOG1848 Uncharacterized conser 93.2 16 0.00034 40.2 19.9 107 293-399 998-1132(1610)
249 PF12830 Nipped-B_C: Sister ch 93.2 0.34 7.5E-06 41.0 6.8 71 446-518 6-76 (187)
250 KOG2005 26S proteasome regulat 93.0 11 0.00023 37.9 19.8 299 21-344 416-727 (878)
251 cd03568 VHS_STAM VHS domain fa 93.0 4 8.7E-05 32.7 12.6 87 135-221 36-127 (144)
252 KOG0803 Predicted E3 ubiquitin 92.9 13 0.00028 41.3 19.2 206 294-500 43-289 (1312)
253 COG5095 TAF6 Transcription ini 92.9 2.8 6.1E-05 37.3 11.8 131 378-515 206-358 (450)
254 PF03224 V-ATPase_H_N: V-ATPas 92.7 6 0.00013 36.8 15.0 143 374-516 109-269 (312)
255 PF04118 Dopey_N: Dopey, N-ter 92.6 8.2 0.00018 35.5 21.6 180 136-320 54-253 (307)
256 PF00514 Arm: Armadillo/beta-c 92.5 0.35 7.6E-06 28.9 4.4 30 486-515 11-40 (41)
257 cd03561 VHS VHS domain family; 92.4 2.2 4.9E-05 33.7 10.1 75 407-481 35-116 (133)
258 KOG2149 Uncharacterized conser 92.4 2.2 4.7E-05 39.9 11.0 111 99-209 60-175 (393)
259 PF08389 Xpo1: Exportin 1-like 92.3 5 0.00011 32.3 15.1 141 306-472 2-148 (148)
260 PF00514 Arm: Armadillo/beta-c 92.2 0.43 9.3E-06 28.5 4.5 30 447-476 11-40 (41)
261 PF07571 DUF1546: Protein of u 92.2 0.44 9.6E-06 34.7 5.4 69 420-492 17-89 (92)
262 PF12765 Cohesin_HEAT: HEAT re 92.1 0.18 3.8E-06 30.4 2.7 24 213-236 17-40 (42)
263 cd03569 VHS_Hrs_Vps27p VHS dom 92.1 5.2 0.00011 32.0 12.9 89 135-223 40-133 (142)
264 PF11698 V-ATPase_H_C: V-ATPas 91.9 1.1 2.5E-05 34.0 7.3 68 136-203 43-114 (119)
265 PF11698 V-ATPase_H_C: V-ATPas 91.7 1 2.2E-05 34.3 6.9 68 410-477 44-115 (119)
266 PF00790 VHS: VHS domain; Int 91.7 3 6.5E-05 33.3 10.2 75 407-481 40-122 (140)
267 PF08064 UME: UME (NUC010) dom 91.5 2.9 6.4E-05 31.5 9.3 63 421-485 27-91 (107)
268 KOG0803 Predicted E3 ubiquitin 91.4 28 0.0006 38.9 20.2 232 187-419 53-330 (1312)
269 smart00288 VHS Domain present 91.3 2.3 5.1E-05 33.5 9.1 75 407-481 35-115 (133)
270 KOG2005 26S proteasome regulat 91.3 18 0.00038 36.5 18.8 252 95-365 450-709 (878)
271 PF12765 Cohesin_HEAT: HEAT re 91.1 0.4 8.7E-06 28.8 3.5 25 369-393 17-41 (42)
272 cd03567 VHS_GGA VHS domain fam 90.9 4.9 0.00011 31.9 10.4 72 331-402 38-119 (139)
273 cd06561 AlkD_like A new struct 90.8 9.5 0.00021 32.5 15.0 64 139-205 108-171 (197)
274 KOG1048 Neural adherens juncti 90.8 22 0.00047 36.5 22.1 96 419-514 529-639 (717)
275 KOG2022 Nuclear transport rece 90.2 26 0.00056 36.6 38.7 361 151-517 439-868 (982)
276 KOG2122 Beta-catenin-binding p 90.1 36 0.00077 38.1 18.9 70 330-399 529-601 (2195)
277 PF08064 UME: UME (NUC010) dom 89.9 6.6 0.00014 29.6 9.9 16 306-321 29-44 (107)
278 PF00790 VHS: VHS domain; Int 89.9 8.8 0.00019 30.6 12.1 86 134-219 40-133 (140)
279 cd07064 AlkD_like_1 A new stru 89.9 12 0.00026 32.3 14.2 64 138-205 117-180 (208)
280 PF08623 TIP120: TATA-binding 89.9 1.1 2.4E-05 36.7 6.0 57 381-438 38-94 (169)
281 PF14225 MOR2-PAG1_C: Cell mor 89.6 15 0.00033 33.0 18.4 137 371-517 112-255 (262)
282 KOG0891 DNA-dependent protein 89.4 55 0.0012 39.2 37.1 207 301-515 490-718 (2341)
283 cd06561 AlkD_like A new struct 89.0 13 0.00029 31.6 16.3 64 217-283 108-171 (197)
284 PF08569 Mo25: Mo25-like; Int 88.9 20 0.00044 33.5 21.9 183 330-514 75-281 (335)
285 PF14222 MOR2-PAG1_N: Cell mor 88.4 31 0.00066 35.0 27.2 297 215-518 130-502 (552)
286 KOG3036 Protein involved in ce 88.3 17 0.00036 31.8 13.3 68 58-125 123-196 (293)
287 KOG2759 Vacuolar H+-ATPase V1 88.0 24 0.00053 33.4 27.1 69 448-516 366-438 (442)
288 KOG2122 Beta-catenin-binding p 87.9 51 0.0011 37.0 18.4 72 291-362 529-603 (2195)
289 COG5095 TAF6 Transcription ini 87.9 11 0.00024 33.7 11.1 131 301-438 207-359 (450)
290 cd00197 VHS_ENTH_ANTH VHS, ENT 87.9 9 0.0002 29.3 9.8 37 330-366 36-72 (115)
291 KOG2081 Nuclear transport regu 87.8 30 0.00065 34.1 32.4 313 97-440 153-497 (559)
292 cd03565 VHS_Tom1 VHS domain fa 87.8 8.8 0.00019 30.6 9.8 74 408-481 37-119 (141)
293 COG5101 CRM1 Importin beta-rel 87.6 33 0.00072 34.5 31.4 150 331-480 481-651 (1053)
294 KOG1993 Nuclear transport rece 87.5 38 0.00083 35.1 32.6 230 73-306 411-670 (978)
295 cd03572 ENTH_epsin_related ENT 86.8 13 0.00027 28.7 9.9 70 446-515 36-118 (122)
296 KOG4500 Rho/Rac GTPase guanine 86.7 30 0.00065 33.0 31.5 146 213-361 314-476 (604)
297 KOG2759 Vacuolar H+-ATPase V1 86.6 30 0.00065 32.9 30.4 153 39-202 65-227 (442)
298 PF05536 Neurochondrin: Neuroc 86.4 40 0.00086 34.2 32.7 151 136-287 98-266 (543)
299 KOG2229 Protein required for a 86.1 35 0.00076 33.2 27.8 330 172-513 17-378 (616)
300 KOG1048 Neural adherens juncti 86.1 45 0.00097 34.4 23.7 146 369-514 517-682 (717)
301 PF08623 TIP120: TATA-binding 86.0 13 0.00027 30.7 9.9 76 342-418 38-115 (169)
302 KOG4524 Uncharacterized conser 86.0 51 0.0011 35.0 25.8 90 331-420 803-900 (1014)
303 KOG2038 CAATT-binding transcri 85.9 46 0.00099 34.4 24.3 125 173-301 302-428 (988)
304 smart00802 UME Domain in UVSB 85.9 8 0.00017 29.1 8.1 72 411-484 13-90 (107)
305 cd03561 VHS VHS domain family; 85.8 16 0.00034 28.9 12.9 76 134-209 35-117 (133)
306 smart00288 VHS Domain present 85.6 16 0.00035 28.8 12.8 86 135-220 36-127 (133)
307 KOG4500 Rho/Rac GTPase guanine 85.5 34 0.00075 32.6 33.3 109 369-477 314-431 (604)
308 PF12231 Rif1_N: Rap1-interact 85.5 35 0.00076 32.7 30.6 71 445-515 271-351 (372)
309 PF09324 DUF1981: Domain of un 84.9 7.7 0.00017 27.8 7.4 68 445-512 14-84 (86)
310 KOG2022 Nuclear transport rece 84.6 57 0.0012 34.3 38.7 359 113-480 440-870 (982)
311 PF04078 Rcd1: Cell differenti 84.3 29 0.00063 30.8 12.4 90 154-243 68-168 (262)
312 PF09324 DUF1981: Domain of un 84.2 11 0.00023 27.1 7.8 68 94-161 14-84 (86)
313 PF11935 DUF3453: Domain of un 83.6 31 0.00068 30.5 13.7 49 448-498 114-164 (239)
314 cd03565 VHS_Tom1 VHS domain fa 82.7 23 0.0005 28.3 12.9 87 136-222 38-133 (141)
315 PF14868 DUF4487: Domain of un 82.3 60 0.0013 32.8 25.7 54 347-400 496-553 (559)
316 smart00567 EZ_HEAT E-Z type HE 82.0 2.1 4.6E-05 23.3 2.8 15 267-281 1-15 (30)
317 PF07539 DRIM: Down-regulated 81.7 11 0.00024 30.0 7.8 81 213-301 16-97 (141)
318 cd00197 VHS_ENTH_ANTH VHS, ENT 81.7 16 0.00035 27.9 8.7 37 408-444 36-72 (115)
319 COG5369 Uncharacterized conser 81.2 5.1 0.00011 38.9 6.6 109 369-477 430-545 (743)
320 PF14225 MOR2-PAG1_C: Cell mor 80.2 44 0.00096 30.0 14.2 128 293-425 112-244 (262)
321 smart00185 ARM Armadillo/beta- 79.6 2.6 5.6E-05 24.7 2.9 27 488-514 13-39 (41)
322 smart00802 UME Domain in UVSB 79.5 24 0.00052 26.5 9.2 55 308-364 31-87 (107)
323 KOG4646 Uncharacterized conser 79.1 29 0.00063 27.2 9.4 145 370-515 17-169 (173)
324 KOG1222 Kinesin associated pro 79.0 65 0.0014 31.3 28.0 345 156-517 283-664 (791)
325 COG5110 RPN1 26S proteasome re 78.8 72 0.0016 31.6 16.1 82 253-338 450-533 (881)
326 KOG0929 Guanine nucleotide exc 78.5 89 0.0019 35.5 15.4 253 146-403 1001-1302(1514)
327 PF14222 MOR2-PAG1_N: Cell mor 78.1 83 0.0018 32.0 30.1 52 425-479 451-502 (552)
328 smart00185 ARM Armadillo/beta- 77.9 3.6 7.8E-05 24.1 3.2 27 449-475 13-39 (41)
329 KOG1222 Kinesin associated pro 77.8 72 0.0016 31.0 25.0 94 134-227 302-399 (791)
330 PF12397 U3snoRNP10: U3 small 77.5 31 0.00066 26.6 10.8 33 330-362 5-38 (121)
331 KOG4524 Uncharacterized conser 76.8 1.1E+02 0.0024 32.7 33.0 91 409-499 803-901 (1014)
332 PF12612 TFCD_C: Tubulin foldi 76.2 23 0.00049 30.2 8.7 18 381-398 18-35 (193)
333 cd07064 AlkD_like_1 A new stru 75.7 52 0.0011 28.4 16.9 132 293-439 47-180 (208)
334 COG5101 CRM1 Importin beta-rel 75.6 96 0.0021 31.4 29.5 163 47-209 469-653 (1053)
335 KOG1932 TATA binding protein a 75.4 1.2E+02 0.0026 33.1 14.7 71 224-302 653-725 (1180)
336 KOG2199 Signal transducing ada 75.2 55 0.0012 30.8 10.9 89 133-221 42-135 (462)
337 PF03130 HEAT_PBS: PBS lyase H 74.6 4.9 0.00011 21.3 2.7 14 308-321 1-14 (27)
338 PF07539 DRIM: Down-regulated 74.4 23 0.00049 28.3 7.6 82 369-457 16-97 (141)
339 PF14668 RICTOR_V: Rapamycin-i 72.5 17 0.00036 25.1 5.5 53 426-478 4-59 (73)
340 KOG2199 Signal transducing ada 72.3 33 0.00072 32.1 8.9 97 340-442 21-122 (462)
341 PF12397 U3snoRNP10: U3 small 71.6 44 0.00096 25.7 12.3 72 133-206 3-76 (121)
342 KOG2753 Uncharacterized conser 71.0 87 0.0019 28.9 14.8 92 347-438 122-216 (378)
343 KOG3678 SARM protein (with ste 70.8 1.1E+02 0.0023 29.8 18.6 144 138-281 182-335 (832)
344 KOG1087 Cytosolic sorting prot 70.5 58 0.0013 32.0 10.7 99 377-481 12-116 (470)
345 PF06371 Drf_GBD: Diaphanous G 69.6 39 0.00084 28.4 8.7 56 421-476 128-186 (187)
346 PF14228 MOR2-PAG1_mid: Cell m 69.6 1.9E+02 0.0042 32.3 28.3 68 254-321 504-572 (1120)
347 KOG1087 Cytosolic sorting prot 66.1 52 0.0011 32.3 9.4 98 339-442 13-116 (470)
348 KOG1932 TATA binding protein a 66.0 1E+02 0.0022 33.6 11.8 126 146-281 653-802 (1180)
349 PF11935 DUF3453: Domain of un 65.8 97 0.0021 27.5 16.9 145 300-458 1-163 (239)
350 COG5369 Uncharacterized conser 64.3 18 0.00038 35.5 5.8 107 98-204 432-545 (743)
351 PF06371 Drf_GBD: Diaphanous G 63.1 51 0.0011 27.7 8.2 56 382-437 128-186 (187)
352 PF04078 Rcd1: Cell differenti 62.9 1.1E+02 0.0025 27.2 19.5 133 133-279 92-232 (262)
353 KOG3961 Uncharacterized conser 59.5 38 0.00083 28.9 6.2 87 135-223 113-201 (262)
354 KOG1926 Predicted regulator of 58.5 2.9E+02 0.0062 30.4 23.1 69 95-164 72-140 (1129)
355 PF14668 RICTOR_V: Rapamycin-i 57.5 42 0.0009 23.2 5.2 52 387-438 4-58 (73)
356 cd03572 ENTH_epsin_related ENT 55.8 94 0.002 24.1 10.2 34 369-402 37-70 (122)
357 KOG3036 Protein involved in ce 55.1 1.5E+02 0.0033 26.2 12.3 56 382-437 137-196 (293)
358 PF14676 FANCI_S2: FANCI solen 54.3 1.2E+02 0.0026 24.8 8.3 21 139-159 135-155 (158)
359 COG4912 Predicted DNA alkylati 54.0 1E+02 0.0022 26.6 8.0 70 173-245 116-185 (222)
360 KOG3961 Uncharacterized conser 53.9 1.1E+02 0.0023 26.4 7.9 67 410-476 115-183 (262)
361 PF11841 DUF3361: Domain of un 53.6 1.2E+02 0.0027 24.7 9.9 110 405-514 7-129 (160)
362 KOG4646 Uncharacterized conser 52.8 1.1E+02 0.0024 24.2 7.3 102 97-198 58-164 (173)
363 KOG1566 Conserved protein Mo25 52.1 1.9E+02 0.0042 26.6 19.2 137 375-511 171-328 (342)
364 COG4912 Predicted DNA alkylati 49.6 1.7E+02 0.0038 25.3 8.8 96 95-195 116-211 (222)
365 KOG4199 Uncharacterized conser 48.3 2.3E+02 0.0051 26.4 25.9 143 372-514 285-442 (461)
366 PF14663 RasGEF_N_2: Rapamycin 47.5 44 0.00096 25.5 4.6 29 410-438 9-37 (115)
367 PF12612 TFCD_C: Tubulin foldi 46.9 1.8E+02 0.0039 24.7 11.5 30 291-320 6-35 (193)
368 KOG1988 Uncharacterized conser 45.8 4E+02 0.0088 28.4 20.7 113 213-325 23-135 (970)
369 COG5231 VMA13 Vacuolar H+-ATPa 45.5 70 0.0015 29.3 6.0 49 116-164 376-427 (432)
370 KOG2229 Protein required for a 44.5 3.3E+02 0.0072 27.0 26.3 95 94-190 17-115 (616)
371 COG2733 Predicted membrane pro 43.2 3E+02 0.0066 26.2 24.8 24 417-440 309-332 (415)
372 KOG1410 Nuclear transport rece 42.9 4E+02 0.0087 27.6 20.5 234 24-264 10-312 (1082)
373 PF12783 Sec7_N: Guanine nucle 42.2 2E+02 0.0042 23.7 10.5 71 368-438 71-146 (168)
374 PF11841 DUF3361: Domain of un 41.7 2E+02 0.0042 23.6 13.6 61 383-443 73-136 (160)
375 PF14663 RasGEF_N_2: Rapamycin 41.2 65 0.0014 24.6 4.7 35 366-400 4-38 (115)
376 KOG1837 Uncharacterized conser 41.1 6.3E+02 0.014 29.3 34.8 74 448-521 1541-1616(1621)
377 PF12333 Ipi1_N: Rix1 complex 40.9 1.5E+02 0.0032 22.1 6.5 37 368-404 9-45 (102)
378 PF10304 DUF2411: Domain of un 40.2 57 0.0012 18.8 3.2 29 488-516 6-35 (36)
379 PF12726 SEN1_N: SEN1 N termin 39.1 5.1E+02 0.011 27.7 30.5 112 96-208 119-247 (727)
380 PF04388 Hamartin: Hamartin pr 39.1 4.9E+02 0.011 27.4 14.7 146 26-184 10-161 (668)
381 PF09450 DUF2019: Domain of un 38.6 55 0.0012 24.5 3.7 26 296-321 51-76 (106)
382 KOG1837 Uncharacterized conser 37.5 7.1E+02 0.015 28.9 30.7 92 388-481 1522-1615(1621)
383 PF04869 Uso1_p115_head: Uso1 37.4 1.9E+02 0.0041 26.9 7.9 168 305-478 51-232 (312)
384 KOG2753 Uncharacterized conser 37.2 3.5E+02 0.0075 25.2 16.5 157 28-204 55-216 (378)
385 COG5330 Uncharacterized protei 35.7 1.7E+02 0.0036 27.6 7.1 61 414-474 12-73 (364)
386 COG5110 RPN1 26S proteasome re 35.2 4.8E+02 0.01 26.3 23.8 75 399-477 631-705 (881)
387 PF12783 Sec7_N: Guanine nucle 34.9 2.6E+02 0.0056 23.0 9.7 72 407-478 71-147 (168)
388 KOG1789 Endocytosis protein RM 34.4 6.9E+02 0.015 27.8 22.3 151 153-304 1742-1910(2235)
389 PF12333 Ipi1_N: Rix1 complex 33.9 1.5E+02 0.0033 22.0 5.6 54 16-69 7-63 (102)
390 KOG3687 Tuberin - Rap/ran-GTPa 33.9 6.7E+02 0.015 27.5 18.4 446 62-518 30-504 (1697)
391 COG2733 Predicted membrane pro 33.3 4.4E+02 0.0095 25.2 22.9 89 151-243 126-214 (415)
392 KOG1086 Cytosolic sorting prot 33.0 3.8E+02 0.0083 25.9 8.9 64 341-404 15-79 (594)
393 COG1698 Uncharacterized protei 32.5 1.9E+02 0.0041 20.8 8.5 59 91-149 11-72 (93)
394 COG5330 Uncharacterized protei 31.5 2.2E+02 0.0048 26.9 7.2 66 449-514 8-74 (364)
395 PF04388 Hamartin: Hamartin pr 30.8 6.6E+02 0.014 26.5 13.1 69 409-479 70-142 (668)
396 COG5209 RCD1 Uncharacterized p 30.1 3.7E+02 0.0081 23.4 9.0 65 59-123 145-215 (315)
397 PF11707 Npa1: Ribosome 60S bi 28.4 5E+02 0.011 24.4 15.6 160 355-515 42-236 (330)
398 PF01465 GRIP: GRIP domain; I 27.2 1.2E+02 0.0027 18.6 3.4 30 369-398 6-35 (46)
399 PF11919 DUF3437: Domain of un 27.0 2.1E+02 0.0045 20.8 5.0 56 423-479 3-60 (90)
400 PF11919 DUF3437: Domain of un 26.7 2E+02 0.0043 20.9 4.9 53 112-165 4-58 (90)
401 COG1698 Uncharacterized protei 25.7 2.6E+02 0.0056 20.1 7.7 52 371-422 18-72 (93)
402 PF09268 Clathrin-link: Clathr 25.5 84 0.0018 16.2 2.0 17 410-426 4-20 (24)
403 cd03562 CID CID (CTD-Interacti 24.6 3.1E+02 0.0067 20.7 9.6 68 330-397 36-106 (114)
404 PF12922 Cnd1_N: non-SMC mitot 24.5 2.4E+02 0.0051 23.4 5.8 57 424-480 96-165 (171)
405 KOG1988 Uncharacterized conser 24.3 9.2E+02 0.02 26.0 19.4 114 134-247 22-135 (970)
406 KOG1823 DRIM (Down-regulated i 24.0 1.1E+03 0.025 27.0 31.4 164 292-460 1002-1181(1364)
407 KOG4337 Microsomal triglycerid 22.5 8.8E+02 0.019 25.2 11.2 55 107-161 504-558 (896)
408 PF04510 DUF577: Family of unk 22.4 4.6E+02 0.0099 21.8 11.5 147 371-519 4-164 (174)
409 cd03562 CID CID (CTD-Interacti 22.0 3.5E+02 0.0076 20.4 7.2 68 407-474 35-105 (114)
410 cd07920 Pumilio Pumilio-family 21.8 6.4E+02 0.014 23.3 25.5 9 295-303 190-198 (322)
411 KOG0267 Microtubule severing p 20.8 3.8E+02 0.0082 27.9 7.0 70 333-403 678-747 (825)
412 PF08324 PUL: PUL domain; Int 20.5 5.9E+02 0.013 22.8 8.1 110 133-242 107-230 (268)
413 PF13925 Katanin_con80: con80 20.1 5E+02 0.011 21.4 7.0 73 291-364 28-102 (164)
No 1
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-47 Score=374.10 Aligned_cols=519 Identities=52% Similarity=0.798 Sum_probs=490.5
Q ss_pred ChhhhhccccCCCcchhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhh
Q 009975 1 MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSAC 80 (521)
Q Consensus 1 ~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~ 80 (521)
+|.++|.+.+++||++|.+.+++.+++++.+.+..+|+.+++.+..++...+.+..+.++.|.+..+..+++++.|..+|
T Consensus 140 ~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sac 219 (759)
T KOG0211|consen 140 LAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSAC 219 (759)
T ss_pred HHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhh
Confidence 47899999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred hhhhhhcCCCC-hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHH
Q 009975 81 GLFHIAYPSAP-DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEG 159 (521)
Q Consensus 81 ~~~~~~~~~~~-~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~ 159 (521)
++++..+...+ +.++.++.+...++++|.++.||..++..++.+++.++.......++|.+.++..|+.+.||..|...
T Consensus 220 glf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~ 299 (759)
T KOG0211|consen 220 GLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVES 299 (759)
T ss_pred hhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHH
Confidence 99999999888 44899999999999999999999999999999999999888899999999999999999999999999
Q ss_pred HHHHhhhcChh-hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhH
Q 009975 160 CAALGKLLEPQ-DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 238 (521)
Q Consensus 160 l~~l~~~~~~~-~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 238 (521)
+..+.+.+..+ +..+.+.+.+.+..+|.+|.+|...+..+..+...++++.......+.+...++|+.+++|.++..-.
T Consensus 300 ~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~ 379 (759)
T KOG0211|consen 300 LVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKV 379 (759)
T ss_pred HHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcch
Confidence 99999999887 78888999999999999999999999999999999999888889999999999999999999999999
Q ss_pred HHHHhhhC----HHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHH-
Q 009975 239 TKFCRILN----PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNII- 313 (521)
Q Consensus 239 ~~l~~~~~----~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~- 313 (521)
..+....+ ++...+.++|.+..+..|.+..||.+.+..+..+.+.+|++...+.+.|.+...++|..++||....
T Consensus 380 ~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~ 459 (759)
T KOG0211|consen 380 QKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLID 459 (759)
T ss_pred HHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHH
Confidence 99988887 4455667889999999999999999999999999999999988999999999999999999999999
Q ss_pred --HHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHH
Q 009975 314 --SKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAA 391 (521)
Q Consensus 314 --~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~ 391 (521)
..+..+....|.+.+.+..+|.+..+..|.+|++|.++++.+..++...|..++.+.+.+.+..++.|....+|.+|.
T Consensus 460 ~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa 539 (759)
T KOG0211|consen 460 KLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAA 539 (759)
T ss_pred HHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHH
Confidence 555556677888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHH
Q 009975 392 NNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKV 471 (521)
Q Consensus 392 ~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~ 471 (521)
..+..++..+|.+|....++|.+..+..+++|..|.+.+.++..++..+|.+.+.++++|.+..+..|++++||.++++.
T Consensus 540 ~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~ 619 (759)
T KOG0211|consen 540 RNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKH 619 (759)
T ss_pred HHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHH
Confidence 99999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975 472 LQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 519 (521)
Q Consensus 472 l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~ 519 (521)
+..+.+.+......+.++|.+..+..|++.|||..|..|++.+.....
T Consensus 620 L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~ 667 (759)
T KOG0211|consen 620 LPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSRL 667 (759)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998876554
No 2
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-33 Score=274.43 Aligned_cols=497 Identities=19% Similarity=0.243 Sum_probs=401.4
Q ss_pred hhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCC-hHHHHHHHH
Q 009975 22 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP-DILKTELRS 100 (521)
Q Consensus 22 ~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~l~~ 100 (521)
+..+.+.....|-.-|..+.+.+..+.-..+.+..+..++|++.+.. ++..++...+..-++.+.+... +.+...+.+
T Consensus 84 ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~ 162 (759)
T KOG0211|consen 84 IAVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLP 162 (759)
T ss_pred HHHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccchhHHHHhhH
Confidence 44455666777888899999999999999998888899999998888 5555666666555555554332 235677888
Q ss_pred HHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHH
Q 009975 101 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180 (521)
Q Consensus 101 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l 180 (521)
.+..++.+..+.||+++++.+..++...+++.....+.|++..+..++....|..++..++......+++..+..+.|..
T Consensus 163 ~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~ 242 (759)
T KOG0211|consen 163 PLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIV 242 (759)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHH
Confidence 99999999999999999999999999988877789999999999998878889999999999999888778899999999
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH-HHHHhhhHHHH
Q 009975 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-LAIQHILPCVK 259 (521)
Q Consensus 181 ~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~ 259 (521)
.++++|..++||.++++.++.+++.++.+...+.++|.+.++..|+...||.+|...+..+...+... ...+.+.+.+.
T Consensus 243 ~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~ 322 (759)
T KOG0211|consen 243 QSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLV 322 (759)
T ss_pred HhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHH
Confidence 99999999999999999999999999998888999999999999999999999999999999998776 77778899999
Q ss_pred HhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc----hhhHhhhHHHH
Q 009975 260 ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG----IDLLSQSLLPA 335 (521)
Q Consensus 260 ~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~----~~~~~~~~~~~ 335 (521)
+..+|++|++|......+..+...+|.+.......+.+..+++|...++|.++......+..... ++...+.++|.
T Consensus 323 ~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~ 402 (759)
T KOG0211|consen 323 QAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPE 402 (759)
T ss_pred HHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHH
Confidence 99999999999999999999998888866666778888888888888888888877777766655 33333556677
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHhhhChh------------------------------------------hhHHHHHH
Q 009975 336 IVELAEDRHWRVRLAIIEYIPLLASQLGVG------------------------------------------FFDDKLGA 373 (521)
Q Consensus 336 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~------------------------------------------~~~~~l~~ 373 (521)
+..+..|.+..+|.+.+..+..+...+|.+ .+.+..+|
T Consensus 403 ~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp 482 (759)
T KOG0211|consen 403 VQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLP 482 (759)
T ss_pred HHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhh
Confidence 777777777777776665555544444433 23344555
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHH
Q 009975 374 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV 453 (521)
Q Consensus 374 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l 453 (521)
.+..+..|..|.+|.+..+.+..++...|..++.+.+-+.+...+.|..+.+|.++...+..++..+|.++....++|.+
T Consensus 483 ~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~ 562 (759)
T KOG0211|consen 483 AIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKL 562 (759)
T ss_pred hhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHH
Confidence 66666666666666666666666666666555555555555556666667777777777777777777655666777777
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975 454 INASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 519 (521)
Q Consensus 454 ~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~ 519 (521)
+....++++.+|.+.+.++..+++.+|.+.+.++++|.+.++..|++++||.++++.+..+.+.+-
T Consensus 563 L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~ 628 (759)
T KOG0211|consen 563 LAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLD 628 (759)
T ss_pred HHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcc
Confidence 777777788888888888888888889999999999999999999999999999999999988764
No 3
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.6e-31 Score=241.57 Aligned_cols=502 Identities=20% Similarity=0.199 Sum_probs=370.5
Q ss_pred CcchhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcCh-------hHHHHhHHHHHHHhhcCCCCcchhhhhhhhhh
Q 009975 13 GGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-------SDLVDWYIPLVKRLAAGEWFTARVSACGLFHI 85 (521)
Q Consensus 13 ~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~-------~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~ 85 (521)
||-++++.++|.|.++++++|.+....|..+|.+||+.... ++..+.++|.+.++.++.+...|.-|+..+..
T Consensus 121 ~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq 200 (885)
T KOG2023|consen 121 GGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQ 200 (885)
T ss_pred cccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhh
Confidence 45678999999999999999999999999999999997432 23346889999999998888999988887776
Q ss_pred hcCCCChH---HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch--hhHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 009975 86 AYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGC 160 (521)
Q Consensus 86 ~~~~~~~~---~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l 160 (521)
+...-+.. ..+.++..+..+..|++|+||+..+.++..+.+.-+.. .....++..+.+..+|.+++|...|++.+
T Consensus 201 ~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFw 280 (885)
T KOG2023|consen 201 FIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFW 280 (885)
T ss_pred eeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHH
Confidence 65444433 46778888899999999999999999999988765532 25567888888899999999999999999
Q ss_pred HHHhhhc-Chh---hhhhhhHHHHHHh----------cC------------------------------------C----
Q 009975 161 AALGKLL-EPQ---DCVAHILPVIVNF----------SQ------------------------------------D---- 186 (521)
Q Consensus 161 ~~l~~~~-~~~---~~~~~l~~~l~~~----------~~------------------------------------d---- 186 (521)
..+++.- .++ .+...++|.+... ++ |
T Consensus 281 la~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~ 360 (885)
T KOG2023|consen 281 LALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDED 360 (885)
T ss_pred HHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccc
Confidence 9998863 222 2334466655431 11 0
Q ss_pred ------CChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC--HHHHHHhhhHHH
Q 009975 187 ------KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PELAIQHILPCV 258 (521)
Q Consensus 187 ------~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l 258 (521)
.+|..|+..+.++.-++..++++.. +.++|.+.+.+..++|-||++++-++|.+++..- --...+.++|++
T Consensus 361 DDdD~~~dWNLRkCSAAaLDVLanvf~~elL-~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l 439 (885)
T KOG2023|consen 361 DDDDAFSDWNLRKCSAAALDVLANVFGDELL-PILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFL 439 (885)
T ss_pred ccccccccccHhhccHHHHHHHHHhhHHHHH-HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHH
Confidence 1389999999999999998887764 7799999999999999999999999999999752 224466789999
Q ss_pred HHhccCCcHHHHHHHHHHHHccccccChH---HHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhH--hhhHH
Q 009975 259 KELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLL 333 (521)
Q Consensus 259 ~~~~~d~~~~vr~~~~~~l~~i~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~--~~~~~ 333 (521)
..++.|+.+-||+..++.+++++...-.+ .+...++..+.+.+-|.+..|+++|+.++..+-+..|.+.+ .+.++
T Consensus 440 ~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL 519 (885)
T KOG2023|consen 440 LSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYIL 519 (885)
T ss_pred HHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 99999999999999999999998776433 33344555556666799999999999999999887774432 11222
Q ss_pred HHHHHHh---cCCChHHHHHHHHHhHHHHhhhC----hhhhHHHHHHHHH---HHcCCCcHHHHHHHHHHHHHHHHHhCH
Q 009975 334 PAIVELA---EDRHWRVRLAIIEYIPLLASQLG----VGFFDDKLGALCM---QWLQDKVYSIRDAAANNLKRLAEEFGP 403 (521)
Q Consensus 334 ~~l~~~~---~~~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~l~~~~~~ 403 (521)
..+...+ +.+|-.+ ...+++.++..+| +..|.+.++|.++ +.++|.++++ --.++|+..++..+|.
T Consensus 520 ~~l~~af~kYQ~KNLlI---LYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~ 595 (885)
T KOG2023|consen 520 DQLVFAFGKYQKKNLLI---LYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGV 595 (885)
T ss_pred HHHHHHHHHHhhcceeh---HHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhc
Confidence 2222222 2233333 4455666666554 4566777777664 4588888876 4467888888888875
Q ss_pred HHH--Hhh-------h----HHHHHhhhcC-----cchHHHHHHHHHHHHhhcccChH----HHhhcHHHHHHhhcCCCC
Q 009975 404 EWA--MQH-------I----TPQVLEMINN-----PHYLYRMTILRAISLLAPVMGSE----ITCSRLLPVVINASKDRV 461 (521)
Q Consensus 404 ~~~--~~~-------l----~~~l~~~l~~-----~~~~~r~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~l~d~~ 461 (521)
.+. ... + ...+...-.+ ++...-..++..++.+++.+|.. .....++..+++++.|+.
T Consensus 596 gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~ 675 (885)
T KOG2023|consen 596 GFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEV 675 (885)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCC
Confidence 431 111 1 1122222222 23344467888999999877753 245679999999999999
Q ss_pred chHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975 462 PNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 519 (521)
Q Consensus 462 ~~VR~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~ 519 (521)
++||+.+...||-+....... .....++|.+-.-++-....|-.+|.||++.++..|+
T Consensus 676 peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g 735 (885)
T KOG2023|consen 676 PEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMG 735 (885)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhc
Confidence 999999999999998875322 1234555665544455577889999999999998876
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.5e-28 Score=237.88 Aligned_cols=487 Identities=14% Similarity=0.183 Sum_probs=374.6
Q ss_pred hhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhc-CCCCcchhhhhhh----hhhhcCCCChHHH
Q 009975 21 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA-GEWFTARVSACGL----FHIAYPSAPDILK 95 (521)
Q Consensus 21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~-~~~~~~r~~~~~~----~~~~~~~~~~~~~ 95 (521)
+.+++.++.+ +|..+|+.|.+++..+...- .++|.+..... .++..+|..+..+ +...|+.++.+++
T Consensus 6 l~qLl~~l~s-pDn~vr~~Ae~~l~~~~~~~-------~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~ 77 (1075)
T KOG2171|consen 6 LEQLLQQLLS-PDNEVRRQAEEALETLAKTE-------PLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQ 77 (1075)
T ss_pred HHHHHHHhcC-CCchHHHHHHHHHHHhhccc-------chHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHH
Confidence 4556666665 66678999999999887753 26777766655 5577888776644 4456788888888
Q ss_pred HHHHHHHHH-hcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh--hh
Q 009975 96 TELRSIYTQ-LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DC 172 (521)
Q Consensus 96 ~~l~~~l~~-l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~ 172 (521)
..+...+.. ..+.+.+.||++.+..+..+++...++ -|+++++.+.+..+++++..|..|..++..+...++.. .+
T Consensus 78 ~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~ 156 (1075)
T KOG2171|consen 78 QSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH 156 (1075)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh
Confidence 888886665 455678999999999999999988877 89999999999999999999999999999999988764 24
Q ss_pred hhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcc--------ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhh
Q 009975 173 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--------RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 244 (521)
Q Consensus 173 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~--------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 244 (521)
...+.+++.+.+.|++..||..++++++.++.....+.. .+.++..+.+.+.+++...-..++++|..+++.
T Consensus 157 ~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~ 236 (1075)
T KOG2171|consen 157 LDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLES 236 (1075)
T ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhh
Confidence 567999999999998888999999999999988752211 123444455566777777778888888888887
Q ss_pred hCHH--HHHHhhhHHHHHhccC--CcHHHHHHHHHHHHccccccCh-----HHHHHhHHHHHHHhhcCCC----------
Q 009975 245 LNPE--LAIQHILPCVKELSSD--SSQHVRSALASVIMGMAPLLGK-----DATIEQLLPIFLSLLKDEF---------- 305 (521)
Q Consensus 245 ~~~~--~~~~~~~~~l~~~~~d--~~~~vr~~~~~~l~~i~~~~~~-----~~~~~~l~~~l~~~l~d~~---------- 305 (521)
.++- .....++....+...+ -+..+|..+++.+..+++.-+. ......++|.++.++.|..
T Consensus 237 ~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~ 316 (1075)
T KOG2171|consen 237 EPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDD 316 (1075)
T ss_pred chHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccc
Confidence 6542 3344455555555554 4678999999988887765211 1134567777777765321
Q ss_pred ------hHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhh--hHHHHHHHHHH
Q 009975 306 ------PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQ 377 (521)
Q Consensus 306 ------~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ 377 (521)
..-...|.+++..++..+|++.+...+++.+..++.+++|.-|.+++.+++.+++.+++.. -.+.++|.+++
T Consensus 317 ~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~ 396 (1075)
T KOG2171|consen 317 LDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLN 396 (1075)
T ss_pred cccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 1246678899999999999988889999999999999999999999999999999887743 34779999999
Q ss_pred HcCCCcHHHHHHHHHHHHHHHHHhCHHH---HHhhhHHHHHhhhcCc-chHHHHHHHHHHHHhhcccChHHH---hhcHH
Q 009975 378 WLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSEIT---CSRLL 450 (521)
Q Consensus 378 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~~~~---~~~il 450 (521)
.++|+++.||.+|+.++|.+...+.++. +.+.+.|.+...+.++ +.++...|+.++-.+...+..+.+ .+.++
T Consensus 397 ~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm 476 (1075)
T KOG2171|consen 397 GLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLM 476 (1075)
T ss_pred hcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 9999999999999999999999998764 3466777888877775 679999999999999988777654 34555
Q ss_pred H-HHHhhcCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCC----CCccHHHHHHHHHHHHHH
Q 009975 451 P-VVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTED----PDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 451 ~-~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~D----~~~~vr~~a~~al~~l~~ 516 (521)
. .+..++..+.+.||..++.+++.++...+.. .+.+.++|.|.+.+.. .....|....+++..+..
T Consensus 477 ~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~ 549 (1075)
T KOG2171|consen 477 EKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIAR 549 (1075)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHH
Confidence 5 4555677889999999999999999887654 3447889999885433 234444444444444443
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.5e-25 Score=218.81 Aligned_cols=471 Identities=17% Similarity=0.221 Sum_probs=368.7
Q ss_pred hHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChH---HHHHHH
Q 009975 23 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELR 99 (521)
Q Consensus 23 ~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~---~~~~l~ 99 (521)
.+|....+.+.+.||+..++.+..+++...++ -|.+++|++.+..++++...|.++..++..+....+.. ....+.
T Consensus 83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~ 161 (1075)
T KOG2171|consen 83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL 161 (1075)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH
Confidence 33556778889999999999999999998888 79999999999999999999999988877655443332 467899
Q ss_pred HHHHHhcCCCChHHHHHHHHhHHHHHHhhCc--hh--hHHHHHH----HHHHhhcCCChhHHHHHHHHHHHHhhhcCh--
Q 009975 100 SIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AH--LKTDIMS----IFEDLTQDDQDSVRLLAVEGCAALGKLLEP-- 169 (521)
Q Consensus 100 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~--~~--~~~~l~~----~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-- 169 (521)
+++.+.+.|++..||..++++++.++..... .. ....++| .+....++.+......+.+++..+++..++
T Consensus 162 ~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l 241 (1075)
T KOG2171|consen 162 RLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL 241 (1075)
T ss_pred HHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH
Confidence 9999999998777999999999999988852 11 2233444 444555666777788888889888887654
Q ss_pred hhhhhhhHHHHHHhcCC--CChHHHHHHHHHHHHHHHHhC-----CCccccchHHHHHHhcC----CCh-----------
Q 009975 170 QDCVAHILPVIVNFSQD--KSWRVRYMVANQLYELCEAVG-----PEPTRMDLVPAYVRLLR----DNE----------- 227 (521)
Q Consensus 170 ~~~~~~l~~~l~~~~~d--~~~~vR~~~~~~l~~i~~~~~-----~~~~~~~l~~~l~~~l~----d~~----------- 227 (521)
......++.+..+.+.+ -+..+|..+.+.+..+++..+ .......+++.+..++. |++
T Consensus 242 ~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~ 321 (1075)
T KOG2171|consen 242 RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDD 321 (1075)
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccccc
Confidence 22344566666666655 467899999999988887632 11234567777777653 211
Q ss_pred -HHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHH--HHHhHHHHHHHhhcCC
Q 009975 228 -AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDE 304 (521)
Q Consensus 228 -~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~ 304 (521)
..-...|..++..++..+|++.+.+.+++.+..++.+++|+-|++++.+++.+++..++.. ..+.+++.+++.++|+
T Consensus 322 ~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dp 401 (1075)
T KOG2171|consen 322 EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDP 401 (1075)
T ss_pred ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC
Confidence 1246788999999999999999899999999999999999999999999999998877633 3568899999999999
Q ss_pred ChHHHHHHHHHHHHhhhhhchhh---HhhhHHHHHHHHhcC-CChHHHHHHHHHhHHHHhhhChhhhHHH---HHH-HHH
Q 009975 305 FPDVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDK---LGA-LCM 376 (521)
Q Consensus 305 ~~~vr~~a~~~l~~~~~~~~~~~---~~~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~~---l~~-~l~ 376 (521)
+|.||.+|+.+++.+...++++. ..+.+.|.+.....+ .+.+|...++.++-.+...+.++.+.++ ++. .+.
T Consensus 402 hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~ 481 (1075)
T KOG2171|consen 402 HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLL 481 (1075)
T ss_pred CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888653 335667777777666 5679999999999999988888655444 444 555
Q ss_pred HHcCCCcHHHHHHHHHHHHHHHHHhCHHHH--HhhhHHHHHhhhcCc----chHHHHHHHHHHHHhhcccChHHHhh---
Q 009975 377 QWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNP----HYLYRMTILRAISLLAPVMGSEITCS--- 447 (521)
Q Consensus 377 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~~~----~~~~r~~a~~~l~~l~~~~~~~~~~~--- 447 (521)
.+++.+.+.||+.+..+++.++...+..+. .+.++|.|...+... ...+|-...++++.++...|.+.|.+
T Consensus 482 ~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~ 561 (1075)
T KOG2171|consen 482 LLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAE 561 (1075)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHH
Confidence 667889999999999999999998887653 478899998877553 36688888999999999999877654
Q ss_pred cHHHHHHhh---cCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHH
Q 009975 448 RLLPVVINA---SKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVE 494 (521)
Q Consensus 448 ~il~~l~~~---l~d~~~~VR~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~ 494 (521)
.++..+..+ ..|.+...|......++.++..+|++ .+.+.++|.+.+
T Consensus 562 eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ 613 (1075)
T KOG2171|consen 562 ELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLK 613 (1075)
T ss_pred HHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHH
Confidence 456666666 45557778999999999999999986 455777776665
No 6
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.5e-26 Score=208.81 Aligned_cols=495 Identities=17% Similarity=0.183 Sum_probs=363.2
Q ss_pred chhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhh----hhhcCCC
Q 009975 15 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLF----HIAYPSA 90 (521)
Q Consensus 15 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~----~~~~~~~ 90 (521)
++++..+.++|++-. ++|+.+|..+...+..+-. ++ ++.++++-.+.+...++. ..|..+-.++ ...++..
T Consensus 9 e~~l~ql~~lLk~s~-Spn~~~~~~~~~~leq~~~-~p--dfnnYL~~IL~~~~~~d~-~~Rs~aGLlLKNnvr~~~~~~ 83 (885)
T KOG2023|consen 9 EQGLQQLAQLLKNSQ-SPNSETRNNVQEKLEQFNL-FP--DFNNYLIYILIRAKSEDV-PTRSLAGLLLKNNVRGHYNSI 83 (885)
T ss_pred HHHHHHHHHHHHhcc-CCChHHHHHHHHHHHHHhc-cc--chhceeeEEEecccccch-hHHHHhhhhHhccccccccCC
Confidence 456667777776655 5888999999988877655 22 344565544444444333 3465543333 2334455
Q ss_pred ChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh
Q 009975 91 PDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ 170 (521)
Q Consensus 91 ~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~ 170 (521)
+.+....+...+.+.+.|.++.||....-.+.+++...+ -..|++++|.+.+++.+++.+..+.|..+|..+++-....
T Consensus 84 ~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~-~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~ 162 (885)
T KOG2023|consen 84 PSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGG-LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQF 162 (885)
T ss_pred ChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccc-cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHH
Confidence 666777888888888999999999888888888776654 4568999999999999999999999999999988754321
Q ss_pred -------hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCChHHHHHHHHHhHHHH
Q 009975 171 -------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 241 (521)
Q Consensus 171 -------~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 241 (521)
.-.+.++|-+.++.+++++.+|..++.++.++.-....... -+.++..+..+..|++++||+..+.+|.-+
T Consensus 163 lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~L 242 (885)
T KOG2023|consen 163 LDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFL 242 (885)
T ss_pred HhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 12345889999999999999999999998877643332221 246777788888999999999999999998
Q ss_pred HhhhCHH--HHHHhhhHHHHHhccCCcHHHHHHHHHHHHcccccc-ChHH---HHHhHHHHHHHhh----------c-C-
Q 009975 242 CRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL-GKDA---TIEQLLPIFLSLL----------K-D- 303 (521)
Q Consensus 242 ~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~-~~~~---~~~~l~~~l~~~l----------~-d- 303 (521)
.+..+.. .....++.++.+..+|.+..|-..|++....+++.- .++. +..+++|.+++.+ + +
T Consensus 243 levr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~e 322 (885)
T KOG2023|consen 243 LEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNE 322 (885)
T ss_pred HHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCcc
Confidence 8875443 234567888888889999999999999888887643 2222 3456677765433 2 0
Q ss_pred --------------------------------------------CChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHH
Q 009975 304 --------------------------------------------EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 339 (521)
Q Consensus 304 --------------------------------------------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~ 339 (521)
.++..|+..+.+++-+...+|.+.+ +.++|.+.+.
T Consensus 323 eD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL-~~l~PlLk~~ 401 (885)
T KOG2023|consen 323 EDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELL-PILLPLLKEH 401 (885)
T ss_pred ccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHH-HHHHHHHHHH
Confidence 0146799999999999999997766 8999999999
Q ss_pred hcCCChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHH---HHHhhhHHHH
Q 009975 340 AEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQV 414 (521)
Q Consensus 340 ~~~~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l 414 (521)
+.+..|.+|++.+-+++.+++.+-.- .+.+.++|.++.++.|..+-||.-++.+|+++.+..-.+ .+...++.-+
T Consensus 402 L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~l 481 (885)
T KOG2023|consen 402 LSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGL 481 (885)
T ss_pred cCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHH
Confidence 99999999999999999999887443 345678999999999999999999999999988765322 2334455555
Q ss_pred HhhhcCcchHHHHHHHHHHHHhhcccChHH--HhhcHHHHHHhhcC---CCCchHHHHHHHHHHHHHhhh----chHHHH
Q 009975 415 LEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASK---DRVPNIKFNVAKVLQSLIPIV----DQSMVE 485 (521)
Q Consensus 415 ~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~---d~~~~VR~~a~~~l~~~~~~~----~~~~~~ 485 (521)
...+-|+|.+++++|+.++..+-+..|.+- |.++++..+...++ .++-.+=. .+++.++... ....+.
T Consensus 482 l~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILY---DAIgtlAdsvg~~Ln~~~Yi 558 (885)
T KOG2023|consen 482 LRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILY---DAIGTLADSVGHALNKPAYI 558 (885)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHH---HHHHHHHHHHHHhcCcHHHH
Confidence 667789999999999999999988777653 45666666555443 33333333 3444444443 344555
Q ss_pred hhHHHHHH-H--hcCCCCccHHHHHHHHHHHHHHhhcc
Q 009975 486 KTIRPCLV-E--LTEDPDVDVRFFATQAIQSIDHVMMS 520 (521)
Q Consensus 486 ~~~~~~l~-~--l~~D~~~~vr~~a~~al~~l~~~~~~ 520 (521)
+.++|.|. + +++|+|+++ +-..+++.++..-+++
T Consensus 559 qiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~ 595 (885)
T KOG2023|consen 559 QILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGV 595 (885)
T ss_pred HHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhc
Confidence 66666555 3 789999997 7778888888877665
No 7
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.3e-23 Score=196.27 Aligned_cols=497 Identities=15% Similarity=0.180 Sum_probs=365.2
Q ss_pred HHhhhhHHhhhhcCchhH-HHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhc-----CCCCcchhhhhhhhhhhc----
Q 009975 18 AHVLLPPLETLCTVEETC-VRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA-----GEWFTARVSACGLFHIAY---- 87 (521)
Q Consensus 18 ~~~l~~~l~~l~~~~~~~-vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~-----~~~~~~r~~~~~~~~~~~---- 87 (521)
|+.++..+.....++.+. +++.+++++|-+|++++|+.+.+..-..+...++ +.+..+|.++.+.+....
T Consensus 127 wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~ 206 (859)
T KOG1241|consen 127 WPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTK 206 (859)
T ss_pred CHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHH
Confidence 677888887776666664 9999999999999999998655433333323222 446678888776543322
Q ss_pred -CCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc---hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 009975 88 -PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAAL 163 (521)
Q Consensus 88 -~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l 163 (521)
....+..++.+++..++..+.++.+||.+|..+|..++....+ ....+.+.++-...+.++++.|...+++.|..+
T Consensus 207 ~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsti 286 (859)
T KOG1241|consen 207 ANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTI 286 (859)
T ss_pred HhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 1223446888999999999999999999999999999876542 223344666666677889999999999999988
Q ss_pred hhhcCh---------h------------hhhhhhHHHHHHhcC-------CCChHHHHHHHHHHHHHHHHhCCCccccch
Q 009975 164 GKLLEP---------Q------------DCVAHILPVIVNFSQ-------DKSWRVRYMVANQLYELCEAVGPEPTRMDL 215 (521)
Q Consensus 164 ~~~~~~---------~------------~~~~~l~~~l~~~~~-------d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l 215 (521)
++.--+ + ...++++|.+.+++. |++|..-+++..+|.-++...+++.. +++
T Consensus 287 ceEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv-~~V 365 (859)
T KOG1241|consen 287 CEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIV-PHV 365 (859)
T ss_pred HHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccch-hhh
Confidence 754111 0 112368888877552 46799999999999999988888776 589
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh----HH
Q 009975 216 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----DA 288 (521)
Q Consensus 216 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~----~~ 288 (521)
+|++.+.++.++|.-|.+|+.+++.+.....+. ......+|.+..+..|++-.||..++++++++++.++. ..
T Consensus 366 l~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~ 445 (859)
T KOG1241|consen 366 LPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQE 445 (859)
T ss_pred HHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHh
Confidence 999999999999999999999999998865554 34456788889999999999999999999999987754 33
Q ss_pred HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch---h--------hHhhhHHHHHHHHhc--C-CChHHHHHHHHH
Q 009975 289 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---D--------LLSQSLLPAIVELAE--D-RHWRVRLAIIEY 354 (521)
Q Consensus 289 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~--------~~~~~~~~~l~~~~~--~-~~~~vr~~~~~~ 354 (521)
....+++.+...++|. |.|-.++++++..+.+.... + .+.+.++..+..... | ..-..|.++.++
T Consensus 446 ~l~~~l~~l~~gL~De-Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeA 524 (859)
T KOG1241|consen 446 LLQSKLSALLEGLNDE-PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEA 524 (859)
T ss_pred hhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHH
Confidence 3445677777777776 89999999999988765421 1 122334444443322 2 346789999999
Q ss_pred hHHHHhhhChhhhH--HHHHHHHHH----HcC---------CCcHHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhh
Q 009975 355 IPLLASQLGVGFFD--DKLGALCMQ----WLQ---------DKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEM 417 (521)
Q Consensus 355 l~~l~~~~~~~~~~--~~l~~~l~~----~l~---------d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~ 417 (521)
|..+.+..+++.+. ..+.+.++. .++ +...+++...+.+|+.+...++.+. ..+.++..+..+
T Consensus 525 LmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri 604 (859)
T KOG1241|consen 525 LMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRI 604 (859)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHH
Confidence 99999998876432 222222222 222 1224456667778888888777642 457788888888
Q ss_pred hcC-cchHHHHHHHHHHHHhhcccChHH--HhhcHHHHHHhhc-CCCCchHHHHHHHHHHHHHhhhchHH--HHhhHHHH
Q 009975 418 INN-PHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQSM--VEKTIRPC 491 (521)
Q Consensus 418 l~~-~~~~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l-~d~~~~VR~~a~~~l~~~~~~~~~~~--~~~~~~~~ 491 (521)
+++ ++..+.+.+..+++.++..+|..+ +.+.|.|++...+ +-....|=.+|...++.++..++.+. +...+...
T Consensus 605 ~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~ 684 (859)
T KOG1241|consen 605 FESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTV 684 (859)
T ss_pred HcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 888 456688999999999999999876 6789999999999 55677888899999999999887763 44666666
Q ss_pred HHHhcCC--CCccHHHHHHHHHHHHHH
Q 009975 492 LVELTED--PDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 492 l~~l~~D--~~~~vr~~a~~al~~l~~ 516 (521)
|.+.++. .+.+|+-...++++.|.-
T Consensus 685 Lvq~Lss~~~hR~vKP~IlS~FgDIAl 711 (859)
T KOG1241|consen 685 LVQCLSSPNLHRNVKPAILSVFGDIAL 711 (859)
T ss_pred HHHHccCccccccccchHHHHHHHHHH
Confidence 6665444 377888888888887754
No 8
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.92 E-value=3.2e-21 Score=181.03 Aligned_cols=472 Identities=19% Similarity=0.286 Sum_probs=342.4
Q ss_pred cCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCC-CCcchhhhhhhhhhhcC--CC--ChHHHHHHHHHHHH
Q 009975 30 TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYP--SA--PDILKTELRSIYTQ 104 (521)
Q Consensus 30 ~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~-~~~~r~~~~~~~~~~~~--~~--~~~~~~~l~~~l~~ 104 (521)
.+.|+-||....++++.++.+++- +.++|++...+.+. ++..|..++...-.++. ++ -+ ....++..+.+
T Consensus 486 dn~deYVRnttarafavvasalgi----p~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlp-hl~~lv~ii~~ 560 (1172)
T KOG0213|consen 486 DNKDEYVRNTTARAFAVVASALGI----PALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLP-HLKPLVKIIEH 560 (1172)
T ss_pred ccccHHHHHHHHHHHHHHHHHhCc----HHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhh-hhHHHHHHHHH
Confidence 467889999999999999999873 47899999999876 66777666544333221 11 12 36778889999
Q ss_pred hcCCCChHHHHHHHHhHHHHHHhhCc---hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh---hhhhhhHH
Q 009975 105 LCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILP 178 (521)
Q Consensus 105 l~~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~ 178 (521)
.+.|.+..||.-++.++..+++..++ +.+...+.|++....+ .....-.+.+++++.+......+ -+..+++-
T Consensus 561 gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~-hrgk~laafLkAigyliplmd~eya~yyTrevml 639 (1172)
T KOG0213|consen 561 GLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQ-HRGKELAAFLKAIGYLIPLMDAEYASYYTREVML 639 (1172)
T ss_pred hhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH-ccChHHHHHHHHHhhccccccHHHHHHhHHHHHH
Confidence 99999999999999999999988776 3344455555444332 22222333455555555444332 12233455
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcc--ccc---------------------------------------hHH
Q 009975 179 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMD---------------------------------------LVP 217 (521)
Q Consensus 179 ~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~--~~~---------------------------------------l~~ 217 (521)
++..=.+.++.+.++.+.+.+.+.+..-|-+.. ..+ ++.
T Consensus 640 il~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~ 719 (1172)
T KOG0213|consen 640 ILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVS 719 (1172)
T ss_pred HHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHH
Confidence 555555666666666666666666554332211 111 233
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHhhhCH--------------------------------------------HHHHHh
Q 009975 218 AYVRLLRDNEAEVRIAAAGKVTKFCRILNP--------------------------------------------ELAIQH 253 (521)
Q Consensus 218 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------------------------------------------~~~~~~ 253 (521)
-.+.-++|+.+..|+..+++...+...+|. ..+.+.
T Consensus 720 R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpq 799 (1172)
T KOG0213|consen 720 RVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQ 799 (1172)
T ss_pred HHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHH
Confidence 333345677777777777777666655542 112333
Q ss_pred hhHHHHHhccCCcHHHHHHHHHHHHccccc---cChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhH--
Q 009975 254 ILPCVKELSSDSSQHVRSALASVIMGMAPL---LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL-- 328 (521)
Q Consensus 254 ~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~---~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~-- 328 (521)
++..+...++++++.||..++..++.++.. ++++....++--++...+..+.++|-...+.++..+...+|....
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~p 879 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP 879 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence 455556678899999999999999988765 466666667777788889999999999999999999988875443
Q ss_pred -hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHH---HHHcCCCcHHHHHHHHHHHHHHHHHhCHH
Q 009975 329 -SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC---MQWLQDKVYSIRDAAANNLKRLAEEFGPE 404 (521)
Q Consensus 329 -~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l---~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 404 (521)
...++|.+.-.+++....|....+..++.++...+.-.-...++.++ +.+|+.-+.++|.+|...+|.+++..|+.
T Consensus 880 Pi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq 959 (1172)
T KOG0213|consen 880 PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ 959 (1172)
T ss_pred ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH
Confidence 25778888888899999999999999999997755432233444444 45567789999999999999999999964
Q ss_pred HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--
Q 009975 405 WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-- 482 (521)
Q Consensus 405 ~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~-- 482 (521)
.++..|.+.++....+.|.+..-+++-+++.+|+- .++|.++.-..-|..+|++..+++++.+.+..|..
T Consensus 960 ----dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF----tVLPalmneYrtPe~nVQnGVLkalsf~Feyigemsk 1031 (1172)
T KOG0213|consen 960 ----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF----TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSK 1031 (1172)
T ss_pred ----HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch----hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhh
Confidence 56778888888888888888888888888877743 47889998899999999999999999999988753
Q ss_pred HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 009975 483 MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 515 (521)
Q Consensus 483 ~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~ 515 (521)
.+.-.+.|.|...+.|.|...|..|..++..+.
T Consensus 1032 dYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1032 DYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred hHHHHhhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 556789999999999999999999999998764
No 9
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.6e-19 Score=170.67 Aligned_cols=492 Identities=18% Similarity=0.175 Sum_probs=343.4
Q ss_pred hhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCC-CCcchhhh-hhhhhhhc------------
Q 009975 22 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSA-CGLFHIAY------------ 87 (521)
Q Consensus 22 ~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~-~~~~r~~~-~~~~~~~~------------ 87 (521)
+..|.+ .-++|+++|..|.+.|...+..- +..++.-....+.+++ ....|..+ +.+-..+.
T Consensus 4 ~~~le~-tlSpD~n~~~~Ae~~l~~~~~~n----f~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~q 78 (859)
T KOG1241|consen 4 LELLEK-TLSPDQNVRKRAEKQLEQAQSQN----FPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQ 78 (859)
T ss_pred HHHHHH-HcCCCcchHHHHHHHHHHHHhcc----HHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHH
Confidence 455666 44689999999999998887742 2222222233444443 34555444 33322222
Q ss_pred --CCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChh-HHHHHHHHHHHHh
Q 009975 88 --PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS-VRLLAVEGCAALG 164 (521)
Q Consensus 88 --~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~-vr~~a~~~l~~l~ 164 (521)
-.++.++++.+...+...+..+.|..+..|..+++.++..--+...|+.+++.+..-..++.+. +|..+++++|.++
T Consensus 79 RWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyic 158 (859)
T KOG1241|consen 79 RWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYIC 158 (859)
T ss_pred HHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 2345567888888899989999999999999999999988777788999999999888877664 9999999999999
Q ss_pred hhcChhhhh---hhhHHHHHH-hc-CCCChHHHHHHHHHHHHHHHH----hCCCccccchHHHHHHhcCCChHHHHHHHH
Q 009975 165 KLLEPQDCV---AHILPVIVN-FS-QDKSWRVRYMVANQLYELCEA----VGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 235 (521)
Q Consensus 165 ~~~~~~~~~---~~l~~~l~~-~~-~d~~~~vR~~~~~~l~~i~~~----~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~ 235 (521)
+.+.++... +.++-.+.. .. ..++..||.++..+|..-... +..+...+.++....+..+.++.++|.+|+
T Consensus 159 e~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~ 238 (859)
T KOG1241|consen 159 EDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAF 238 (859)
T ss_pred ccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHH
Confidence 999887433 334443333 32 357889999999987654443 334444466777777788899999999999
Q ss_pred HhHHHHHhhhCH--HHHH-HhhhHHHHHhccCCcHHHHHHHHHHHHcccccc-------Ch------H--------HHHH
Q 009975 236 GKVTKFCRILNP--ELAI-QHILPCVKELSSDSSQHVRSALASVIMGMAPLL-------GK------D--------ATIE 291 (521)
Q Consensus 236 ~~l~~l~~~~~~--~~~~-~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~-------~~------~--------~~~~ 291 (521)
.+|..+....=. +.+. +.+++.-.....+.++.|...+++..+.++..- |+ . ....
T Consensus 239 ~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~ 318 (859)
T KOG1241|consen 239 QCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQ 318 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHh
Confidence 999998886421 1111 224444455566888889999988888665311 10 0 0134
Q ss_pred hHHHHHHHhhc-------CCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh
Q 009975 292 QLLPIFLSLLK-------DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 364 (521)
Q Consensus 292 ~l~~~l~~~l~-------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~ 364 (521)
.++|.+++++. |+++..-++|-.+|.-+++..|.+.+ +.++|.+.+-++.++|+-|.+++-+++.+.....+
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~ 397 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP 397 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch
Confidence 78999988874 23567889999999999998886655 78999999999999999999999999999877655
Q ss_pred hh---hHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH----HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 009975 365 GF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP----EWAMQHITPQVLEMINNPHYLYRMTILRAISLLA 437 (521)
Q Consensus 365 ~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~ 437 (521)
.. .....+|.+..++.|+.-.||.++..+++.+++.+.. ......+++.+..-++| .+++-..+++++..++
T Consensus 398 ~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~La 476 (859)
T KOG1241|consen 398 DKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLA 476 (859)
T ss_pred hhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHH
Confidence 43 3455788999999999999999999999999987643 22334455555655555 5788889999999988
Q ss_pred cccCh-----------HHHhhcHHHHHHhhcC--C-CCchHHHHHHHHHHHHHhhhchHHHH------hhHHHHHHHhc-
Q 009975 438 PVMGS-----------EITCSRLLPVVINASK--D-RVPNIKFNVAKVLQSLIPIVDQSMVE------KTIRPCLVELT- 496 (521)
Q Consensus 438 ~~~~~-----------~~~~~~il~~l~~~l~--d-~~~~VR~~a~~~l~~~~~~~~~~~~~------~~~~~~l~~l~- 496 (521)
+++.. ..+.+.++..++..-+ | ...+.|.+|..+|..+++..+.+.+. ..++.-|....
T Consensus 477 ea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~ 556 (859)
T KOG1241|consen 477 EAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTIS 556 (859)
T ss_pred HHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64321 1133444444544432 2 35679999999999999876654331 12222222111
Q ss_pred --------CCCCccHHHHHHHHHHHHHHhhcc
Q 009975 497 --------EDPDVDVRFFATQAIQSIDHVMMS 520 (521)
Q Consensus 497 --------~D~~~~vr~~a~~al~~l~~~~~~ 520 (521)
.+.-.++....+.+++++-.++++
T Consensus 557 ~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~ 588 (859)
T KOG1241|consen 557 SQILSLADRAQLNELQSLLCNTLQSIIRKVGS 588 (859)
T ss_pred HHhccHhhHHHHHHHHHHHHHHHHHHHHHccc
Confidence 122446677777888888777765
No 10
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.90 E-value=8.5e-20 Score=171.63 Aligned_cols=486 Identities=15% Similarity=0.134 Sum_probs=350.4
Q ss_pred hhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcCh---hHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCCh
Q 009975 16 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE---SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD 92 (521)
Q Consensus 16 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~---~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 92 (521)
.|+..++..+...+.|+...||--+..++..+++..+| +.+.+.+-|+.....++-. ..-.+.+..++-+.+-..+
T Consensus 549 phl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrg-k~laafLkAigyliplmd~ 627 (1172)
T KOG0213|consen 549 PHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRG-KELAAFLKAIGYLIPLMDA 627 (1172)
T ss_pred hhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccC-hHHHHHHHHHhhccccccH
Confidence 57777899999999999999999999999999998776 4444455555543333211 1223334555666655544
Q ss_pred H----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch--hhHHHHHH---------------------------
Q 009975 93 I----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMS--------------------------- 139 (521)
Q Consensus 93 ~----~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~--------------------------- 139 (521)
+ ...+++-.+..-..++|.+.++.+.+.+..++...+-+ ....+++|
T Consensus 628 eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ 707 (1172)
T KOG0213|consen 628 EYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVE 707 (1172)
T ss_pred HHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHH
Confidence 4 22333333444345667777777777777766554321 11111111
Q ss_pred ------------HHHHhhcCCChhHHHHHHHHHHHHhhhcCh--------------------------------------
Q 009975 140 ------------IFEDLTQDDQDSVRLLAVEGCAALGKLLEP-------------------------------------- 169 (521)
Q Consensus 140 ------------~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-------------------------------------- 169 (521)
-+..-+.|+.+..|....++...+...++.
T Consensus 708 ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~ 787 (1172)
T KOG0213|consen 708 IAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVN 787 (1172)
T ss_pred HHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHH
Confidence 111123566677777777777666554431
Q ss_pred ------hhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCc---cccchHHHHHHhcCCChHHHHHHHHHhHHH
Q 009975 170 ------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLRDNEAEVRIAAAGKVTK 240 (521)
Q Consensus 170 ------~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 240 (521)
+.+.+.|...++..++++++.||..++..++.++..++... ...++-.++.+.+..+.++|--..+.++..
T Consensus 788 ~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAika 867 (1172)
T KOG0213|consen 788 ALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKA 867 (1172)
T ss_pred HHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHH
Confidence 01122344455667889999999999999999998776432 234566778888889999999988888888
Q ss_pred HHhhhCHHH---HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHH---HHHhhcCCChHHHHHHHH
Q 009975 241 FCRILNPEL---AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI---FLSLLKDEFPDVRLNIIS 314 (521)
Q Consensus 241 l~~~~~~~~---~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~---l~~~l~d~~~~vr~~a~~ 314 (521)
+...+|... -...++|.+...+.+++.+|...++..++.|+..-++.....+++.+ ++.+++..+.++|++|.+
T Consensus 868 I~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~n 947 (1172)
T KOG0213|consen 868 IVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVN 947 (1172)
T ss_pred HHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888875431 13457788888889999999999999999998655443333344444 345677889999999999
Q ss_pred HHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 009975 315 KLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNL 394 (521)
Q Consensus 315 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 394 (521)
+++.+++.+|+.. ++..+.+-++....+.|....-+++.+++.+|+- .++|.+++-..-++..|+...++++
T Consensus 948 TfG~IakaIGPqd----VLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF----tVLPalmneYrtPe~nVQnGVLkal 1019 (1172)
T KOG0213|consen 948 TFGYIAKAIGPQD----VLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF----TVLPALMNEYRTPEANVQNGVLKAL 1019 (1172)
T ss_pred hhhHHHHhcCHHH----HHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch----hhhHHHHhhccCchhHHHHhHHHHH
Confidence 9999999999854 5667777666667777777777788888888764 3788888888889999999999999
Q ss_pred HHHHHHhCHH--HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhc---ccChHHHhhcHHHHHHhhcCCCCchHHHHHH
Q 009975 395 KRLAEEFGPE--WAMQHITPQVLEMINNPHYLYRMTILRAISLLAP---VMGSEITCSRLLPVVINASKDRVPNIKFNVA 469 (521)
Q Consensus 395 ~~l~~~~~~~--~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~---~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~ 469 (521)
.-+.+..|.. .+...+.|.|.+.+.|.+.-.|+.+..++.+++- ..|.+...-++++.++.-.-+++|.|.++..
T Consensus 1020 sf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~ 1099 (1172)
T KOG0213|consen 1020 SFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFD 1099 (1172)
T ss_pred HHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHH
Confidence 9999887753 2345688999999999999999999999999985 4566777788999999999999999999999
Q ss_pred HHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 009975 470 KVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 514 (521)
Q Consensus 470 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l 514 (521)
.++..+...+|+..+..+++..| =.|...||..-+..+.++
T Consensus 1100 e~~eg~r~~Lg~~~~~~Y~~QGL----FHParkVR~~yw~vyn~m 1140 (1172)
T KOG0213|consen 1100 EAMEGLRVALGPQAMLKYCLQGL----FHPARKVRKRYWTVYNSM 1140 (1172)
T ss_pred HHHHHHHHHhchHHHHHHHHHhc----cCcHHHHHHHHHHHHHhH
Confidence 99999999999877666655443 346778888777776655
No 11
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.90 E-value=2.1e-20 Score=187.74 Aligned_cols=473 Identities=14% Similarity=0.131 Sum_probs=353.8
Q ss_pred hhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHH
Q 009975 20 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELR 99 (521)
Q Consensus 20 ~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~ 99 (521)
.+++.+.+++.++|...|+.+--.+..+...-+ + ..-.....+.+=..+++..+|..|+..++.+. .++..+.+.
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~-~-~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~ 116 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDP-E-LLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLI 116 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSH-H-HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcch-h-HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHH
Confidence 455566677778899999988877777776533 2 23345555655566777889999998888766 566788899
Q ss_pred HHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh---hhhhhh
Q 009975 100 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHI 176 (521)
Q Consensus 100 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l 176 (521)
+.+.+++.|++|.||+.|+.++..+.+..+...... +.+.+.+++.|+++.|+..|+.++..+ ...++ ...+.+
T Consensus 117 ~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~ 193 (526)
T PF01602_consen 117 PDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKL 193 (526)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHH
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHH
Confidence 999999999999999999999999998755322222 789999999999999999999999998 22222 233445
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccc--cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhh
Q 009975 177 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR--MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 254 (521)
Q Consensus 177 ~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 254 (521)
.+.+.+.+.+.++-.+..+++.+..++..- .... ..+++.+..++++.++.|...++.++..+... ......+
T Consensus 194 ~~~L~~~l~~~~~~~q~~il~~l~~~~~~~--~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~---~~~~~~~ 268 (526)
T PF01602_consen 194 IRILCQLLSDPDPWLQIKILRLLRRYAPME--PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS---PELLQKA 268 (526)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHTTSTSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---HHHHHHH
T ss_pred HHHhhhcccccchHHHHHHHHHHHhcccCC--hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc---hHHHHhh
Confidence 555566668888888888888777554211 1112 35888888888888899999888888765442 2355678
Q ss_pred hHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHH
Q 009975 255 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 334 (521)
Q Consensus 255 ~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 334 (521)
++.+..++.++++.+|..++.++..++...++... .....+..+..+++..+|..++..+..++..-.. ..+++
T Consensus 269 ~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~----~~Il~ 342 (526)
T PF01602_consen 269 INPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANESNV----KEILD 342 (526)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHH----HHHHH
T ss_pred HHHHHHHhhcccchhehhHHHHHHHhhcccchhhh--hhhhhhheecCCCChhHHHHHHHHHhhcccccch----hhHHH
Confidence 88899999999999999999999999876633322 3333444555688999999999999998864332 55777
Q ss_pred HHHHHhcC-CChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHH
Q 009975 335 AIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 413 (521)
Q Consensus 335 ~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 413 (521)
.+.+.+.+ .+..+|..++..++.++...++. .++.++.+++++......+...+...+..+...... ....++..
T Consensus 343 eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~--~~~~~l~~ 418 (526)
T PF01602_consen 343 ELLKYLSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPE--LREKILKK 418 (526)
T ss_dssp HHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT--THHHHHHH
T ss_pred HHHHHHHhccchhhhhhHHHHHHHHHhccCch--HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChh--hhHHHHHH
Confidence 77777744 47789999999999999888554 466778888888888888888888888887765432 13446677
Q ss_pred HHhhhcC-cchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHH
Q 009975 414 VLEMINN-PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCL 492 (521)
Q Consensus 414 l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l 492 (521)
+.+.+.+ .+...+..+++.+|..+...........++..+.....+..+.||...+.++.++....+.+...+.+...+
T Consensus 419 L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~ 498 (526)
T PF01602_consen 419 LIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFL 498 (526)
T ss_dssp HHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHH
Confidence 7776655 567889999999999998776511456778888888888889999999999999998876655566888888
Q ss_pred HHhcC--CCCccHHHHHHHHHHHHH
Q 009975 493 VELTE--DPDVDVRFFATQAIQSID 515 (521)
Q Consensus 493 ~~l~~--D~~~~vr~~a~~al~~l~ 515 (521)
.++.+ +.+.+||..|..-+.-+.
T Consensus 499 ~~~~~~~s~~~evr~Ra~~y~~ll~ 523 (526)
T PF01602_consen 499 LSLATEDSSDPEVRDRAREYLRLLN 523 (526)
T ss_dssp HCHHHHS-SSHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHc
Confidence 88877 889999999998776554
No 12
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.89 E-value=1.3e-19 Score=167.05 Aligned_cols=473 Identities=17% Similarity=0.220 Sum_probs=334.4
Q ss_pred cCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCC-CCcchhhhhhhhhhhcCCCC---hHHHHHHHHHHHHh
Q 009975 30 TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAP---DILKTELRSIYTQL 105 (521)
Q Consensus 30 ~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~-~~~~r~~~~~~~~~~~~~~~---~~~~~~l~~~l~~l 105 (521)
.+.|+-||...-++.+.++++++- ++++|++..++.+. ++..|..++...-.+...+. -.....++..+-++
T Consensus 291 ~~~deYVRnvt~ra~~vva~algv----~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~ 366 (975)
T COG5181 291 TSKDEYVRNVTGRAVGVVADALGV----EELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKL 366 (975)
T ss_pred ccccHHHHHHHHHHHHHHHHhhCc----HHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHH
Confidence 467889999999999999999884 57899999998865 66777766655443332111 11356788889999
Q ss_pred cCCCChHHHHHHHHhHHHHHHhhCc---hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhh---hhhhhHHH
Q 009975 106 CQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD---CVAHILPV 179 (521)
Q Consensus 106 ~~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~ 179 (521)
+.|.+..||-.++.++..+++..++ +.+...+.|++....+. ....-.+.+++.+.+...+.++- .......+
T Consensus 367 l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~h-rgk~l~sfLkA~g~iiplm~peYa~h~tre~m~i 445 (975)
T COG5181 367 LKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQH-RGKELVSFLKAMGFIIPLMSPEYACHDTREHMEI 445 (975)
T ss_pred hhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhc-CCchHHHHHHHhccccccCChHhhhhhHHHHHHH
Confidence 9999999999999999999998876 34445555655544332 22222233344444444333321 11223333
Q ss_pred HHHhcCCCC----------------------hHHHHHHHH-HHHHHHHH--hCC----------------CccccchHHH
Q 009975 180 IVNFSQDKS----------------------WRVRYMVAN-QLYELCEA--VGP----------------EPTRMDLVPA 218 (521)
Q Consensus 180 l~~~~~d~~----------------------~~vR~~~~~-~l~~i~~~--~~~----------------~~~~~~l~~~ 218 (521)
+...+++++ |..|..+.- .+..+-.. .++ ....+.+..-
T Consensus 446 v~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~k 525 (975)
T COG5181 446 VFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRK 525 (975)
T ss_pred HHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHH
Confidence 333333333 333333221 11111110 000 0011345666
Q ss_pred HHHhcCCChHHHHHHHHHhHHHHHhhhCHH--------------------------------------------HHHHhh
Q 009975 219 YVRLLRDNEAEVRIAAAGKVTKFCRILNPE--------------------------------------------LAIQHI 254 (521)
Q Consensus 219 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--------------------------------------------~~~~~~ 254 (521)
+.+..+|+....|..++.+...+...+|.. .+...+
T Consensus 526 il~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~i 605 (975)
T COG5181 526 ILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMI 605 (975)
T ss_pred HHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHH
Confidence 677778887778888887777666655421 122335
Q ss_pred hHHHHHhccCCcHHHHHHHHHHHHccccc---cChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhH---
Q 009975 255 LPCVKELSSDSSQHVRSALASVIMGMAPL---LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--- 328 (521)
Q Consensus 255 ~~~l~~~~~d~~~~vr~~~~~~l~~i~~~---~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~--- 328 (521)
+..+..++.++.+.+|..++..++.++.. +|+.....++-.++...+....++|-...+.++..+....+....
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpP 685 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPP 685 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCc
Confidence 55667778899999999999998887654 466666677778888889999999999999999988877664422
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHH---HHcCCCcHHHHHHHHHHHHHHHHHhCHHH
Q 009975 329 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM---QWLQDKVYSIRDAAANNLKRLAEEFGPEW 405 (521)
Q Consensus 329 ~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 405 (521)
...++|.+...+.++...+....+..++.++...+...-...++.+++ ..|+.-+.++|.+|...+|.+.+..|+
T Consensus 686 i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP-- 763 (975)
T COG5181 686 ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP-- 763 (975)
T ss_pred hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH--
Confidence 257788888888899999999999999999877654322333444443 456778999999999999999999996
Q ss_pred HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--H
Q 009975 406 AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--M 483 (521)
Q Consensus 406 ~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~--~ 483 (521)
+.++..|.+.++....+.|.+..-+++-+++.+|+- .++|.+..-...|..+|++..++++..+.+..|.. .
T Consensus 764 --qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~d 837 (975)
T COG5181 764 --QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLD 837 (975)
T ss_pred --HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888988888899898888853 47889999899999999999999999999988865 4
Q ss_pred HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 009975 484 VEKTIRPCLVELTEDPDVDVRFFATQAIQSID 515 (521)
Q Consensus 484 ~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~ 515 (521)
+.-.+.|.|...+.|.|+..|..|...+..+.
T Consensus 838 Yvy~itPlleDAltDrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 838 YVYSITPLLEDALTDRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred HHHHhhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence 55789999999999999999999999988664
No 13
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=5.7e-19 Score=164.93 Aligned_cols=482 Identities=15% Similarity=0.087 Sum_probs=350.2
Q ss_pred hhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCC-CCcchhhhhhhhhhhcCCCChH--HHHHH
Q 009975 22 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI--LKTEL 98 (521)
Q Consensus 22 ~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~-~~~~r~~~~~~~~~~~~~~~~~--~~~~l 98 (521)
++.+-.-..|+.+.+|..-.++.......-+.+.+ ..+.|...+..+.. +...|..-..+.+....++... ....+
T Consensus 19 ~~~~~~~g~d~~~~v~~~ml~a~~~~~~~~~~~~v-~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~ 97 (569)
T KOG1242|consen 19 LLFLVSAGEDRRIDVRGNMLEAGEAAINQHGDQNV-LNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISI 97 (569)
T ss_pred ceeecccCCCcchhhHHhHHHHHHHHHHhhhHHHH-HHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHH
Confidence 34443334688889999888888887777776655 57788887766643 4455655566666665554322 24456
Q ss_pred HHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhh-hhhhhH
Q 009975 99 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD-CVAHIL 177 (521)
Q Consensus 99 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~ 177 (521)
+..+.+....+++.+|++...++..+...... .....+++.+.+++......-|..+...+..+....+-+. ....++
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l 176 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKG-LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFL 176 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhc-cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHH
Confidence 66677777788999999999999988765543 3456677788888887777778888777777766654332 344578
Q ss_pred HHHHHhcCCCChHHHH-HHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhh
Q 009975 178 PVIVNFSQDKSWRVRY-MVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 254 (521)
Q Consensus 178 ~~l~~~~~d~~~~vR~-~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 254 (521)
..+.+...|.....|+ .+..++......+|... ..-.++|.+.....|....||.+|..+...+...++.......+
T Consensus 177 ~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~ll 256 (569)
T KOG1242|consen 177 DNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLL 256 (569)
T ss_pred HHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhh
Confidence 8888888886665444 46666666666666432 22456777777788999999999999999999988776654434
Q ss_pred hHHHHHhccCCcHHHHHHHHHHHHccccccChH--HHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhH
Q 009975 255 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 332 (521)
Q Consensus 255 ~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 332 (521)
.+.+..+. +..|+.+.++++.++.++.+-+.. .....++|.+...+.|..++||.++..++..++..+....+ ..+
T Consensus 257 psll~~l~-~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI-~~~ 334 (569)
T KOG1242|consen 257 PSLLGSLL-EAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI-QKI 334 (569)
T ss_pred hhhHHHHH-HHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH-HHH
Confidence 44444444 449999999999999888777663 35678999999999999999999999999999998886665 788
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhH-HHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHH----HHH
Q 009975 333 LPAIVELAEDRHWRVRLAIIEYIP-LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE----WAM 407 (521)
Q Consensus 333 ~~~l~~~~~~~~~~vr~~~~~~l~-~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~ 407 (521)
+|.+.+.+.|+...+..+.-.... .++..+.. ...+.++|++.+.+.+.+...++.++..++.++.-.... .+.
T Consensus 335 ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl 413 (569)
T KOG1242|consen 335 IPTLLDALADPSCYTPECLDSLGATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL 413 (569)
T ss_pred HHHHHHHhcCcccchHHHHHhhcceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH
Confidence 999999999998665543221111 12222222 335779999999999999999999999999999877322 345
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchH-HHHHHHHHHHHHhhhchHHHHh
Q 009975 408 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNI-KFNVAKVLQSLIPIVDQSMVEK 486 (521)
Q Consensus 408 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~V-R~~a~~~l~~~~~~~~~~~~~~ 486 (521)
..++|.+...+.++.+.+|..+..+++.+.+..|...+ ....|.+...+.+....+ |..++..++.+...++.+.+..
T Consensus 414 ~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~ 492 (569)
T KOG1242|consen 414 PSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVED 492 (569)
T ss_pred HHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHH
Confidence 77888888889999999999999999999999888776 788899988887765444 8899999999998887776644
Q ss_pred hHHHHHHHhcC-CCCccHHHHHHH
Q 009975 487 TIRPCLVELTE-DPDVDVRFFATQ 509 (521)
Q Consensus 487 ~~~~~l~~l~~-D~~~~vr~~a~~ 509 (521)
.+-..+....+ ..++.+|....+
T Consensus 493 ~~~~~~a~~~~~~~~~~~~dg~~~ 516 (569)
T KOG1242|consen 493 ILPEILANASSVLIDERIRDGVIW 516 (569)
T ss_pred HHHHHHHHHhhccchhhhccCeee
Confidence 44333333333 334445544333
No 14
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.89 E-value=2.5e-18 Score=166.02 Aligned_cols=501 Identities=16% Similarity=0.202 Sum_probs=326.8
Q ss_pred hhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhc---C----
Q 009975 16 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAY---P---- 88 (521)
Q Consensus 16 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~---~---- 88 (521)
+..+.+...+.++++|.++.|+..|+++++-+...++.++++..+-.+...+..+.....-.+++.+...+. +
T Consensus 43 dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~ 122 (1233)
T KOG1824|consen 43 DSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSS 122 (1233)
T ss_pred cchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccc
Confidence 344567888889999999999999999999999999988887666666666555544333345555443333 2
Q ss_pred CCChHHHHHHHHHHHHhcC--CCChHHHHHHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 009975 89 SAPDILKTELRSIYTQLCQ--DDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG 164 (521)
Q Consensus 89 ~~~~~~~~~l~~~l~~l~~--~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~ 164 (521)
.....+.+.+.|.+..... .+..-++-.++..++.+...+|. ..++..++..+...+..+...||+.++.+++.++
T Consensus 123 ~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la 202 (1233)
T KOG1824|consen 123 FLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLA 202 (1233)
T ss_pred ccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHH
Confidence 1223366777777766543 33445888888888888888775 3477778888888888889999999999999999
Q ss_pred hhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhc---CCChHHHHHHHHHhHH
Q 009975 165 KLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLL---RDNEAEVRIAAAGKVT 239 (521)
Q Consensus 165 ~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~--~~~l~~~l~~~l---~d~~~~vr~~a~~~l~ 239 (521)
...+.+.+..-+-.++..+.+..+...-+..+++++.+++..|.... .+.++|.+.+++ +.++++.|+.++++++
T Consensus 203 ~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale 282 (1233)
T KOG1824|consen 203 SSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALE 282 (1233)
T ss_pred HhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHH
Confidence 99887755555555555666666766677788999999999887543 367899999988 6677899999999999
Q ss_pred HHHhhhCHHH--HHHhhhHHHHHhc----------------------------------cCCcHHHHHHHHHHHHccccc
Q 009975 240 KFCRILNPEL--AIQHILPCVKELS----------------------------------SDSSQHVRSALASVIMGMAPL 283 (521)
Q Consensus 240 ~l~~~~~~~~--~~~~~~~~l~~~~----------------------------------~d~~~~vr~~~~~~l~~i~~~ 283 (521)
.+....+.+. +.+.+...+.+.+ +|-+|.||+++++++..+...
T Consensus 283 ~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS 362 (1233)
T KOG1824|consen 283 SFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS 362 (1233)
T ss_pred HHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc
Confidence 9999877652 1222222222111 122599999999999876532
Q ss_pred cCh--HHHHHhHHHHHHHhhcCCChHH-----------------------------------------------------
Q 009975 284 LGK--DATIEQLLPIFLSLLKDEFPDV----------------------------------------------------- 308 (521)
Q Consensus 284 ~~~--~~~~~~l~~~l~~~l~d~~~~v----------------------------------------------------- 308 (521)
..+ ..+...+-|.+..-+++.++.|
T Consensus 363 R~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~ 442 (1233)
T KOG1824|consen 363 RLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQK 442 (1233)
T ss_pred cHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHH
Confidence 211 0011112222222222222222
Q ss_pred ---------HHHHHHHHHHhhhhh-------------------------------------------chhhH---hhhHH
Q 009975 309 ---------RLNIISKLDQVNQVI-------------------------------------------GIDLL---SQSLL 333 (521)
Q Consensus 309 ---------r~~a~~~l~~~~~~~-------------------------------------------~~~~~---~~~~~ 333 (521)
|.++...+..++..+ +++.+ ...+.
T Consensus 443 qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls 522 (1233)
T KOG1824|consen 443 QLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALS 522 (1233)
T ss_pred HHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhh
Confidence 222222222221110 01111 11223
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---------hhhHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHhC
Q 009975 334 PAIVELAEDRHWRVRLAIIEYIPLLASQLGV---------GFFDDKLGALCMQWL--QDKVYSIRDAAANNLKRLAEEFG 402 (521)
Q Consensus 334 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~ 402 (521)
|.+.....++.+++-..++-.+..+++.+.+ ..+...+....++.+ +|.+.+||+.|+.+++.++..+|
T Consensus 523 ~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg 602 (1233)
T KOG1824|consen 523 PPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG 602 (1233)
T ss_pred hHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh
Confidence 3333344666666666666666666655422 223333444444443 47888999999999999998888
Q ss_pred HHH--HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhc---ccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975 403 PEW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAP---VMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 403 ~~~--~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~---~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~ 477 (521)
... .....+|.+.+.++ |.-.|.+|+.++..++. .+.......++++.+...+.-.....|.....++..+.+
T Consensus 603 D~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~ 680 (1233)
T KOG1824|consen 603 DFLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVK 680 (1233)
T ss_pred hhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 421 12345555555554 45678889999888875 233334457788888888877777888899999988888
Q ss_pred hhch---HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 009975 478 IVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 518 (521)
Q Consensus 478 ~~~~---~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~ 518 (521)
.++. ....+.++..+..|.+++|-.|-..|...+.++...-
T Consensus 681 ~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ 724 (1233)
T KOG1824|consen 681 NYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQ 724 (1233)
T ss_pred HHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 7753 2334566666677888999888888888888776543
No 15
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.88 E-value=1.1e-18 Score=186.57 Aligned_cols=493 Identities=13% Similarity=0.098 Sum_probs=345.2
Q ss_pred hhhHHhhhhcCchhHHHHHHHHHHHHHHhhcCh---hHHHHhHHHHHHHhhcC-CCCcchhhhhhhhhhhcCCCChH---
Q 009975 21 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRE---SDLVDWYIPLVKRLAAG-EWFTARVSACGLFHIAYPSAPDI--- 93 (521)
Q Consensus 21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~---~~~~~~l~p~i~~~~~~-~~~~~r~~~~~~~~~~~~~~~~~--- 93 (521)
..|.+..+++++++.++..|+..+..++...+. .-+....+|.+.+++.+ ++..+|..+...+..+..+.++.
T Consensus 190 aVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~ 269 (2102)
T PLN03200 190 GVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQA 269 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHH
Confidence 677788888889999999999988888765432 22456778888888864 45578888887787777654433
Q ss_pred -HHHHHHHHHHHhcCCCC---------hHHHHHHHHhHHHHHHhhCc-----------h-hhH---H--H----------
Q 009975 94 -LKTELRSIYTQLCQDDM---------PMVRRSAASNLGKFAATVEP-----------A-HLK---T--D---------- 136 (521)
Q Consensus 94 -~~~~l~~~l~~l~~~~~---------~~vr~~a~~~l~~l~~~~~~-----------~-~~~---~--~---------- 136 (521)
....-++.+.+++..++ +..++.+..+|++++..... . ... . .
T Consensus 270 Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d 349 (2102)
T PLN03200 270 IADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFD 349 (2102)
T ss_pred HHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcC
Confidence 11223456665554333 45689999999998864211 0 000 0 0
Q ss_pred -------------HHHHHHHhhcCCChh-HHHHHHHHHHHHhhhcCh--hhhhhhhHHHHHHhcCCCChHHHHHHHHHHH
Q 009975 137 -------------IMSIFEDLTQDDQDS-VRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLY 200 (521)
Q Consensus 137 -------------l~~~l~~l~~d~~~~-vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~ 200 (521)
+.+.+.+++...++. +...+.++|..+..+..- -.......+.+..++...+.+++..++.++.
T Consensus 350 ~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~ 429 (2102)
T PLN03200 350 SSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALS 429 (2102)
T ss_pred CchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHH
Confidence 012222222222221 122223333221111100 0011234455666666677889999999988
Q ss_pred HHHHHhC---CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhhhHHHHHhccCCcHHHHHHHH
Q 009975 201 ELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALA 274 (521)
Q Consensus 201 ~i~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~ 274 (521)
.++..-. ........+|.+++++.+++..+|..|+..++.++..-... ......+|.+.+++..++..+|..++
T Consensus 430 ~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAa 509 (2102)
T PLN03200 430 SLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSA 509 (2102)
T ss_pred HHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 7763211 11223457899999999999999999999999987633221 12245789999999999999999999
Q ss_pred HHHHccccccCh-H-HH-HHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHH
Q 009975 275 SVIMGMAPLLGK-D-AT-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAI 351 (521)
Q Consensus 275 ~~l~~i~~~~~~-~-~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~ 351 (521)
+++++++..-.. . .. ....+|.++.++++.+++++..|+.++..+...-. +..++.+..++..++..++..+
T Consensus 510 wAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d-----~~~I~~Lv~LLlsdd~~~~~~a 584 (2102)
T PLN03200 510 TVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD-----AATISQLTALLLGDLPESKVHV 584 (2102)
T ss_pred HHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHhcCCChhHHHHH
Confidence 999999863211 1 11 23578999999999999999999999999976432 3345667788888888888889
Q ss_pred HHHhHHHHhhhChhhhH------HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcc
Q 009975 352 IEYIPLLASQLGVGFFD------DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPH 422 (521)
Q Consensus 352 ~~~l~~l~~~~~~~~~~------~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~ 422 (521)
++.++.+......+... ...+|.+..+++.++..+++.|+.++..++..-.. .......+|.+..++.+.+
T Consensus 585 L~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~ 664 (2102)
T PLN03200 585 LDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNT 664 (2102)
T ss_pred HHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC
Confidence 99888887655443211 24689999999999999999999999999863221 2234678899999999999
Q ss_pred hHHHHHHHHHHHHhhcccChHH----HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhc
Q 009975 423 YLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELT 496 (521)
Q Consensus 423 ~~~r~~a~~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~ 496 (521)
..++..++++++.++.....+. .....+|.+.+++++++..++..++.+|..++...... ......+|.|.+++
T Consensus 665 ~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lL 744 (2102)
T PLN03200 665 EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVL 744 (2102)
T ss_pred hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHH
Confidence 9999999999999997433332 23568889999999999999999999999999865332 34466789999999
Q ss_pred CCCCccHHHHHHHHHHHHHHhh
Q 009975 497 EDPDVDVRFFATQAIQSIDHVM 518 (521)
Q Consensus 497 ~D~~~~vr~~a~~al~~l~~~~ 518 (521)
.+...++|.+|++++..|++..
T Consensus 745 r~G~~~~k~~Aa~AL~~L~~~~ 766 (2102)
T PLN03200 745 REGTLEGKRNAARALAQLLKHF 766 (2102)
T ss_pred HhCChHHHHHHHHHHHHHHhCC
Confidence 9999999999999999888654
No 16
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=7.1e-19 Score=164.29 Aligned_cols=413 Identities=17% Similarity=0.173 Sum_probs=311.0
Q ss_pred HHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhc-CCChhHHHHHHHHHHHHhhhcChhh-hhhhhHH
Q 009975 101 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQD-CVAHILP 178 (521)
Q Consensus 101 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~ 178 (521)
++...-.|+.+.||....++........+.+ ....+.|...+.++ +.++.+|...+-..+.++.+....+ ....++.
T Consensus 21 ~~~~~g~d~~~~v~~~ml~a~~~~~~~~~~~-~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~ 99 (569)
T KOG1242|consen 21 FLVSAGEDRRIDVRGNMLEAGEAAINQHGDQ-NVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIE 99 (569)
T ss_pred eecccCCCcchhhHHhHHHHHHHHHHhhhHH-HHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHH
Confidence 3333347788889999888888777666643 34456666666554 4477889998888888888865432 3344666
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHH-HhhhHH
Q 009975 179 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI-QHILPC 257 (521)
Q Consensus 179 ~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~~ 257 (521)
.+..-...+++.+|++...++..+........ ...+.+.+.+++......-|..+...+..+....+-+.+. ..++..
T Consensus 100 ~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~-~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~ 178 (569)
T KOG1242|consen 100 ILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS-GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDN 178 (569)
T ss_pred HHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC-HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHH
Confidence 77777888999999999999988876554333 4567888888888777788888888888777766554433 346677
Q ss_pred HHHhccCCcHHH-HHHHHHHHHccccccCh--HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHH
Q 009975 258 VKELSSDSSQHV-RSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 334 (521)
Q Consensus 258 l~~~~~d~~~~v-r~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 334 (521)
+.....|++... |+.+..++......+|. +.+.-.++|.++..+.|..+.||.+|..+...+...+....+ +.++|
T Consensus 179 l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV-K~llp 257 (569)
T KOG1242|consen 179 LSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV-KLLLP 257 (569)
T ss_pred HHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh-hHhhh
Confidence 777778876654 44455555555555554 223446788888889999999999999999999988887766 56666
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHH
Q 009975 335 AIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 412 (521)
Q Consensus 335 ~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 412 (521)
.+..-+.+..|+.+.++++.++.++...+.. ...+.++|.+.+.+.|..+.||.++.+++..+.....+.. .+.++|
T Consensus 258 sll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~ip 336 (569)
T KOG1242|consen 258 SLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKIIP 336 (569)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHHH
Confidence 6655444559999999999999998887664 5568899999999999999999999999999998887665 467999
Q ss_pred HHHhhhcCcchHHHHHHHHHHHH--hhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc-hH---HHHh
Q 009975 413 QVLEMINNPHYLYRMTILRAISL--LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD-QS---MVEK 486 (521)
Q Consensus 413 ~l~~~l~~~~~~~r~~a~~~l~~--l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~-~~---~~~~ 486 (521)
.+.+.+.|++..+..+ +..++. +..... ..-..-+.|.+.+.+.+.+...+..++..++.++.-.. +. .+.+
T Consensus 337 ~Lld~l~dp~~~~~e~-~~~L~~ttFV~~V~-~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~ 414 (569)
T KOG1242|consen 337 TLLDALADPSCYTPEC-LDSLGATTFVAEVD-APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP 414 (569)
T ss_pred HHHHHhcCcccchHHH-HHhhcceeeeeeec-chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH
Confidence 9999999998655432 222222 111111 12346788999999999999999999999999998873 32 4568
Q ss_pred hHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975 487 TIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 519 (521)
Q Consensus 487 ~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~ 519 (521)
.++|.+.+...|++++||..+++|++.+.+-++
T Consensus 415 ~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 415 SLLPGLKENLDDAVPEVRAVAARALGALLERLG 447 (569)
T ss_pred HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999887665
No 17
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.87 E-value=3e-20 Score=194.29 Aligned_cols=275 Identities=22% Similarity=0.268 Sum_probs=220.7
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhh
Q 009975 176 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL 255 (521)
Q Consensus 176 l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 255 (521)
-++.+...++|+++.||..+++.|+.+. .+..++.+.+.++|+++.||..|+.+|..+.+..+. .
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~ 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------A 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------h
Confidence 3456777889999999999999999764 356789999999999999999999999988654332 2
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHH
Q 009975 256 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 335 (521)
Q Consensus 256 ~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 335 (521)
+.+...+.++++.||..++.+++.+.. +. .+.+...++|+++.||..|+.+|+.+.. .+.
T Consensus 687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~--~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~ 746 (897)
T PRK13800 687 PALRDHLGSPDPVVRAAALDVLRALRA--GD-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VES 746 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc--CC-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHH
Confidence 345566788999999999999988642 11 2356778999999999999999998632 134
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHH
Q 009975 336 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 415 (521)
Q Consensus 336 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 415 (521)
+...++|+++.||..++..|+.+...- ....+.+..+++|+++.||.+|+.+|+.+.. ...+.+.+.
T Consensus 747 l~~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~-------~~~~~~~l~ 813 (897)
T PRK13800 747 VAGAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGC-------PPDDVAAAT 813 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC-------cchhHHHHH
Confidence 567789999999999999998775431 1235677899999999999999999987632 123445677
Q ss_pred hhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHh
Q 009975 416 EMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 495 (521)
Q Consensus 416 ~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l 495 (521)
..+.|++|.+|..|+.+|+.+.. +..++.+..+++|+++.||..|+.+|+.+. + .+...+.|.+.
T Consensus 814 ~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----~~~a~~~L~~a 878 (897)
T PRK13800 814 AALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWP---G----DPAARDALTTA 878 (897)
T ss_pred HHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C----CHHHHHHHHHH
Confidence 88999999999999999988752 345688999999999999999999999862 1 24567888888
Q ss_pred cCCCCccHHHHHHHHHHH
Q 009975 496 TEDPDVDVRFFATQAIQS 513 (521)
Q Consensus 496 ~~D~~~~vr~~a~~al~~ 513 (521)
++|+|.+||..|.++|..
T Consensus 879 l~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 879 LTDSDADVRAYARRALAH 896 (897)
T ss_pred HhCCCHHHHHHHHHHHhh
Confidence 999999999999999864
No 18
>PRK09687 putative lyase; Provisional
Probab=99.87 E-value=5.4e-20 Score=164.36 Aligned_cols=254 Identities=20% Similarity=0.186 Sum_probs=191.0
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHH
Q 009975 215 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 294 (521)
Q Consensus 215 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~ 294 (521)
-.+.+...+.|++..||..++.+|..+.. +.+++.+..++.++++.+|..++++++.+...-.. ....+
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~ 92 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNVF 92 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHH
Confidence 35666677788888888888888876543 33556667777888888888888888887532110 23456
Q ss_pred HHHHHh-hcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHH
Q 009975 295 PIFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 373 (521)
Q Consensus 295 ~~l~~~-l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 373 (521)
|.+..+ ++|+++.||..|+.+|+.+...-. ......++.+.....|++|.||..++.+|+.+. .+..++
T Consensus 93 ~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--------~~~ai~ 162 (280)
T PRK09687 93 NILNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN--------DEAAIP 162 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC--------CHHHHH
Confidence 777665 788888999999988888753211 011345666777778889999999988886442 234678
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHH
Q 009975 374 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV 453 (521)
Q Consensus 374 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l 453 (521)
.+..+++|+++.||..|+.+|+.+. .+ .+...+.|...+.|+++.+|..|+.+++.+.. +..+|.+
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~~--~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~L 228 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSNK--YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSVL 228 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCC--CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHHH
Confidence 8889999999999999999998871 11 23577788888899999999999999988643 4678889
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcC-CCCccHHHHHHHHHHH
Q 009975 454 INASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTE-DPDVDVRFFATQAIQS 513 (521)
Q Consensus 454 ~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~-D~~~~vr~~a~~al~~ 513 (521)
++.++|+. +|..++.+|+.+.. +..+|.|.++++ ++|..|+..|.+++.+
T Consensus 229 i~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 229 IKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 99998866 78889999988875 467888888775 8899999999988864
No 19
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.86 E-value=6.7e-18 Score=180.77 Aligned_cols=472 Identities=13% Similarity=0.144 Sum_probs=339.8
Q ss_pred hHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCC-CCcchhhhhhhhhhh---cCCCChHHH----HHHHHHHHHh
Q 009975 34 TCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIA---YPSAPDILK----TELRSIYTQL 105 (521)
Q Consensus 34 ~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~-~~~~r~~~~~~~~~~---~~~~~~~~~----~~l~~~l~~l 105 (521)
...++.|+-+|+.+|... ..++|++.+..++. +......++..+..+ .....+... ..+.+.+.++
T Consensus 297 ~~Lqe~AvwALsNIcgg~------~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~L 370 (2102)
T PLN03200 297 QALQENAMGALANICGGM------SALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKL 370 (2102)
T ss_pred hHHHHHHHHHHHHHhCCc------hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHH
Confidence 345788888999998764 46788887776643 222222333333333 222222111 1234678888
Q ss_pred cCCCChH-HHHHHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh---hhhhhhhHHH
Q 009975 106 CQDDMPM-VRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPV 179 (521)
Q Consensus 106 ~~~~~~~-vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~ 179 (521)
+.++++. ++..+..+|..+...... -.......+.+..++...+..++..++..+..++..-.. .......+|.
T Consensus 371 lr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~ 450 (2102)
T PLN03200 371 LKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQL 450 (2102)
T ss_pred hCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHH
Confidence 8887666 477888887654332211 112345567788888888889999999999999865221 1123347899
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH-HHHH--Hh
Q 009975 180 IVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-ELAI--QH 253 (521)
Q Consensus 180 l~~~~~d~~~~vR~~~~~~l~~i~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~--~~ 253 (521)
+.+++.+++..+|..++..++.++..-. ........+|.+.+++..++..+|+.|+.+++.++..-.. .... ..
T Consensus 451 LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aG 530 (2102)
T PLN03200 451 LISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAG 530 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCC
Confidence 9999999999999999999998874211 1122367899999999999999999999999999874211 1112 24
Q ss_pred hhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhH-----
Q 009975 254 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----- 328 (521)
Q Consensus 254 ~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~----- 328 (521)
.+|.+.+++.+.++++|..+++++..+...-.. ..++.+..++..+++.++..++..++.+......+..
T Consensus 531 AIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-----~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~ 605 (2102)
T PLN03200 531 AVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-----ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGS 605 (2102)
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-----hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhh
Confidence 788889999999999999999999998654322 2346677888888899999999999888664443221
Q ss_pred -hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHH
Q 009975 329 -SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 404 (521)
Q Consensus 329 -~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 404 (521)
....+|.+.+++++++..+++.++..+..++..-.. .......+|.+..++++.+.+++..++.+|+.+......+
T Consensus 606 ~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~ 685 (2102)
T PLN03200 606 AANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKEN 685 (2102)
T ss_pred hccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHH
Confidence 245789999999999999999999999888864322 2334557888889999999999999999999998633222
Q ss_pred ----HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh--HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 009975 405 ----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 478 (521)
Q Consensus 405 ----~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~ 478 (521)
......+|.|.+++++++..++..++.++..++..-.. +......++.+...+++.++.+|..|+.+|..++..
T Consensus 686 q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~ 765 (2102)
T PLN03200 686 RKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKH 765 (2102)
T ss_pred HHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhC
Confidence 12356899999999999999999999999999974322 223467789999999999999999999999999988
Q ss_pred hchHH-H-----HhhHHHHHHHhcCCCCccHHHH--HHHHHHHHHH
Q 009975 479 VDQSM-V-----EKTIRPCLVELTEDPDVDVRFF--ATQAIQSIDH 516 (521)
Q Consensus 479 ~~~~~-~-----~~~~~~~l~~l~~D~~~~vr~~--a~~al~~l~~ 516 (521)
...+. + .......|..+++-.|.++-.. |..++..+.+
T Consensus 766 ~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~ 811 (2102)
T PLN03200 766 FPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLAR 811 (2102)
T ss_pred CChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHh
Confidence 76443 2 2334455555556555555554 8888877766
No 20
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.86 E-value=4e-17 Score=149.74 Aligned_cols=513 Identities=13% Similarity=0.082 Sum_probs=349.3
Q ss_pred hhhhccccCCCcchhHHhhhhHHhhhhcCchh-HHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHh-----hcCCCCcch
Q 009975 3 EELGVFIPYVGGVEHAHVLLPPLETLCTVEET-CVRDKAVESLCRIGSQMRESDLVDWYIPLVKRL-----AAGEWFTAR 76 (521)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~-~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~-----~~~~~~~~r 76 (521)
..++.++.+=-..-.++.++..+.....++.| +....++..++.+|+.-.|+.+...--..+... .+++...+|
T Consensus 116 ql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avR 195 (858)
T COG5215 116 QLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVR 195 (858)
T ss_pred HHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHH
Confidence 33444544422223467778887777777766 788899999999999999965543222222222 224456778
Q ss_pred hhhhhhhhhhc-----CCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhC---chhhHHHHHHHHHHhhcCC
Q 009975 77 VSACGLFHIAY-----PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE---PAHLKTDIMSIFEDLTQDD 148 (521)
Q Consensus 77 ~~~~~~~~~~~-----~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~l~~d~ 148 (521)
.+++..+.... ...-+..++.+++..++..+.++.+++.++.-++..++.... +...++.+..+..+.+.+.
T Consensus 196 LaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~ 275 (858)
T COG5215 196 LAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQ 275 (858)
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 77776543311 122344688899999999999999999999999999886533 2344556666777788999
Q ss_pred ChhHHHHHHHHHHHHhhhcCh-h------------------hhhhhhHHHHHHhcC-------CCChHHHHHHHHHHHHH
Q 009975 149 QDSVRLLAVEGCAALGKLLEP-Q------------------DCVAHILPVIVNFSQ-------DKSWRVRYMVANQLYEL 202 (521)
Q Consensus 149 ~~~vr~~a~~~l~~l~~~~~~-~------------------~~~~~l~~~l~~~~~-------d~~~~vR~~~~~~l~~i 202 (521)
++.|...+++.+..+++.-.+ + ....+++|-++.++. +++|.+..++..++.-+
T Consensus 276 nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlf 355 (858)
T COG5215 276 NDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLF 355 (858)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHH
Confidence 999999999999888764211 0 112346777776553 46899999999999988
Q ss_pred HHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhhhHHHHHhccCCcHHHHHHHHHHHHc
Q 009975 203 CEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMG 279 (521)
Q Consensus 203 ~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~ 279 (521)
+...|+.... .++.++.+.++.++|.-|.+|+.+++.+...-... .+.++.+|.+.....|+.-.|+..++++++.
T Consensus 356 aq~~gd~i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~ 434 (858)
T COG5215 356 AQLKGDKIMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGA 434 (858)
T ss_pred HHHhhhHhHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHH
Confidence 8877766543 48888899999999999999999999988744332 3456678888888899999999999999999
Q ss_pred cccccChHHHH-HhHHHHHH---HhhcCCChHHHHHHHHHHHHhhhhhchhh------H---hhhHHHHHHHHh--cCCC
Q 009975 280 MAPLLGKDATI-EQLLPIFL---SLLKDEFPDVRLNIISKLDQVNQVIGIDL------L---SQSLLPAIVELA--EDRH 344 (521)
Q Consensus 280 i~~~~~~~~~~-~~l~~~l~---~~l~d~~~~vr~~a~~~l~~~~~~~~~~~------~---~~~~~~~l~~~~--~~~~ 344 (521)
+++........ .++.+... ..+.|. |.+-.++.+....+..++.+-. + -..++..+.... .+..
T Consensus 435 iad~va~~i~p~~Hl~~~vsa~liGl~D~-p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne 513 (858)
T COG5215 435 IADHVAMIISPCGHLVLEVSASLIGLMDC-PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNE 513 (858)
T ss_pred HHHHHHHhcCccccccHHHHHHHhhhhcc-chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccc
Confidence 98766443221 12333322 234443 6666677777777666655321 1 122333332211 3455
Q ss_pred hHHHHHHHHHhHHHHhhhChhh------hHHHHHHHHHHHc---------CC--CcHHHHHHHHHHHHHHHHHhCH--HH
Q 009975 345 WRVRLAIIEYIPLLASQLGVGF------FDDKLGALCMQWL---------QD--KVYSIRDAAANNLKRLAEEFGP--EW 405 (521)
Q Consensus 345 ~~vr~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l---------~d--~~~~vr~~a~~~l~~l~~~~~~--~~ 405 (521)
...|.+..++++.+...++... +.+++..-+.+.+ +| ...++....+..+..++...+. +.
T Consensus 514 ~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~ 593 (858)
T COG5215 514 SNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIED 593 (858)
T ss_pred hhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 6789999999999988776531 1122222221111 12 2345666777777777777766 34
Q ss_pred HHhhhHHHHHhhhcCcch-HHHHHHHHHHHHhhcccCh--HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH
Q 009975 406 AMQHITPQVLEMINNPHY-LYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 482 (521)
Q Consensus 406 ~~~~l~~~l~~~l~~~~~-~~r~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~ 482 (521)
..++++..+...++..++ .+-.-...+++.+...++. +.+.+.+.|++.+.++..+..|-..+...++.++..++.+
T Consensus 594 v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~d 673 (858)
T COG5215 594 VEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTD 673 (858)
T ss_pred HHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhh
Confidence 556788888888877643 3445566677777765554 4477899999999999999999999999999999998876
Q ss_pred H--HHhhHHHHHHHhcCC--CCccHHHHHHHHHHHHHHh
Q 009975 483 M--VEKTIRPCLVELTED--PDVDVRFFATQAIQSIDHV 517 (521)
Q Consensus 483 ~--~~~~~~~~l~~l~~D--~~~~vr~~a~~al~~l~~~ 517 (521)
. +...+...|.+.++. .+.+++-...++++.+.--
T Consensus 674 f~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAla 712 (858)
T COG5215 674 FNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALA 712 (858)
T ss_pred HHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHH
Confidence 4 345666666665443 4778888888888877643
No 21
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.85 E-value=1.6e-18 Score=174.25 Aligned_cols=441 Identities=18% Similarity=0.193 Sum_probs=326.7
Q ss_pred HHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHH
Q 009975 18 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE 97 (521)
Q Consensus 18 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 97 (521)
.......+.+=+.++++.+|-.|+++++.++. ..+.+.+.|.+.++..++++.+|..|+..+..++...++.....
T Consensus 77 ~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~----~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~ 152 (526)
T PF01602_consen 77 LILIINSLQKDLNSPNPYIRGLALRTLSNIRT----PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE 152 (526)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S----HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc----cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH
Confidence 34456667776778999999999999999873 34557888999999998888999998888888876655443222
Q ss_pred HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch--hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhh
Q 009975 98 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH 175 (521)
Q Consensus 98 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 175 (521)
+.+.+.+++.|+++.|+.+|+..+..+ +..+.. ...+.+...+.+++.+.++..+...++++..++..-........
T Consensus 153 ~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~ 231 (526)
T PF01602_consen 153 LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNR 231 (526)
T ss_dssp HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHH
T ss_pred HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHH
Confidence 899999999999999999999999998 222212 34455566666666888888888888888876654322211156
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhh
Q 009975 176 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL 255 (521)
Q Consensus 176 l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 255 (521)
+++.+...+++.++.|...++..+..+.. .......+++.+.+++.++++++|..++.++..++...++... ...
T Consensus 232 ~i~~l~~~l~s~~~~V~~e~~~~i~~l~~---~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--~~~ 306 (526)
T PF01602_consen 232 IIEPLLNLLQSSSPSVVYEAIRLIIKLSP---SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF--NQS 306 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG--THH
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhhc---chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh--hhh
Confidence 78888888888889999988888765432 1223467889999999999999999999999998886522221 222
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCC-ChHHHHHHHHHHHHhhhhhchhhHhhhHHH
Q 009975 256 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQSLLP 334 (521)
Q Consensus 256 ~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 334 (521)
..+..+..+++..+|..++..+..++. +...+.+++.+...+.+. ++++|..++..++.++....... +..++
T Consensus 307 ~~~~~l~~~~d~~Ir~~~l~lL~~l~~----~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~--~~~v~ 380 (526)
T PF01602_consen 307 LILFFLLYDDDPSIRKKALDLLYKLAN----ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDA--EWYVD 380 (526)
T ss_dssp HHHHHHHCSSSHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSH--HHHHH
T ss_pred hhhheecCCCChhHHHHHHHHHhhccc----ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchH--HHHHH
Confidence 222333457888899999998888874 223456777788888444 78899999999999998775432 66788
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHhCH-HHHHhhhHH
Q 009975 335 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGP-EWAMQHITP 412 (521)
Q Consensus 335 ~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~ 412 (521)
.+.+++...+..+...++..+..+....+.. ....+..+...+.+ .++.++..++..+|+....... . ....++.
T Consensus 381 ~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~--~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~ 457 (526)
T PF01602_consen 381 TLLKLLEISGDYVSNEIINVIRDLLSNNPEL--REKILKKLIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILR 457 (526)
T ss_dssp HHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT--HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHH
T ss_pred HHHHhhhhccccccchHHHHHHHHhhcChhh--hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHH
Confidence 8888888877788888888887777654332 34567777777766 6778999999999999877754 2 3456677
Q ss_pred HHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcC--CCCchHHHHHHHHHHHHHh
Q 009975 413 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK--DRVPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 413 ~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~--d~~~~VR~~a~~~l~~~~~ 477 (521)
.+.+...+.+..+|...+.++.++....+.....+.+.+.+.+... +.+++||..|...+..+-.
T Consensus 458 ~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~~ 524 (526)
T PF01602_consen 458 SLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLLNS 524 (526)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcc
Confidence 7777777788899999999999999877654445688889988888 8899999999988876543
No 22
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.85 E-value=1.8e-17 Score=153.21 Aligned_cols=480 Identities=14% Similarity=0.107 Sum_probs=332.0
Q ss_pred hhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChh---HHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCCh
Q 009975 16 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD 92 (521)
Q Consensus 16 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~---~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 92 (521)
.|+..++..+.+++.|+...||..+..++..+++..+|- ++.+.+-|+.....++- -..-.+.+..++.+.+-.++
T Consensus 354 ~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hr-gk~l~sfLkA~g~iiplm~p 432 (975)
T COG5181 354 SHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHR-GKELVSFLKAMGFIIPLMSP 432 (975)
T ss_pred hhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcC-CchHHHHHHHhccccccCCh
Confidence 566778999999999999999999999999999987764 43344445443333221 11223334445555554443
Q ss_pred H----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHH--------------------------------------------
Q 009975 93 I----LKTELRSIYTQLCQDDMPMVRRSAASNLGKF-------------------------------------------- 124 (521)
Q Consensus 93 ~----~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l-------------------------------------------- 124 (521)
+ ...+...++.....+++.+.++.........
T Consensus 433 eYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvi 512 (975)
T COG5181 433 EYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVI 512 (975)
T ss_pred HhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHH
Confidence 2 2233444444443333333222221111111
Q ss_pred -HHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh----------------------------------
Q 009975 125 -AATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---------------------------------- 169 (521)
Q Consensus 125 -~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---------------------------------- 169 (521)
++..+. +.+..-+.+-..|+.+..|..++.+...+...++.
T Consensus 513 lAk~~g~----~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~ 588 (975)
T COG5181 513 LAKMGGD----PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFS 588 (975)
T ss_pred HHHHcCC----hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEeccc
Confidence 111111 12233334445666666677666655555443321
Q ss_pred ----------hhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcCCChHHHHHHHHH
Q 009975 170 ----------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAG 236 (521)
Q Consensus 170 ----------~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~ 236 (521)
+.....++..++..++++.+.||..++..++.++..++.. .....+-.++.+.+..+.++|--..+.
T Consensus 589 tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~ 668 (975)
T COG5181 589 TVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILK 668 (975)
T ss_pred ceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHH
Confidence 0111224555677888999999999999999998876532 223456677788888888999888888
Q ss_pred hHHHHHhhhCHH---HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHH---HHHhhcCCChHHHH
Q 009975 237 KVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI---FLSLLKDEFPDVRL 310 (521)
Q Consensus 237 ~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~---l~~~l~d~~~~vr~ 310 (521)
++..+....+-. .-...++|.+...+.+++.+|....+..++.++..-+......+++.+ +..+++..+.++|+
T Consensus 669 Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR 748 (975)
T COG5181 669 AICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRR 748 (975)
T ss_pred HHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 887777665432 113457888888889999999999999999988665443333444444 34567889999999
Q ss_pred HHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHH
Q 009975 311 NIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAA 390 (521)
Q Consensus 311 ~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a 390 (521)
+|.++++.+.+.+|+. .++..+.+-++....+.|....-+++.+++.+|+- .++|.++.-...++..|+...
T Consensus 749 ~A~~tfG~Is~aiGPq----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGv 820 (975)
T COG5181 749 NATETFGCISRAIGPQ----DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGV 820 (975)
T ss_pred hhhhhhhhHHhhcCHH----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhH
Confidence 9999999999999985 45677777777777777877777888889988874 378888888888999999999
Q ss_pred HHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcc---cChHHHhhcHHHHHHhhcCCCCchHH
Q 009975 391 ANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---MGSEITCSRLLPVVINASKDRVPNIK 465 (521)
Q Consensus 391 ~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~---~~~~~~~~~il~~l~~~l~d~~~~VR 465 (521)
++++.-+.+..|... +...+.|.+.+.+.|.++-.|+.+...+.++.-. .|.+...=++++.++.-.-++.|.|.
T Consensus 821 Lkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi 900 (975)
T COG5181 821 LKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVI 900 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHH
Confidence 999999998887642 3466889999999999999999999999999853 44555566788999999999999999
Q ss_pred HHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHH
Q 009975 466 FNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQ 512 (521)
Q Consensus 466 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~ 512 (521)
++..+++..+.+.+|...+-.++... +=.|..+||..-...+.
T Consensus 901 ~~~~Eg~e~~~~~lg~g~~m~Yv~qG----LFHPs~~VRk~ywtvyn 943 (975)
T COG5181 901 QSFDEGMESFATVLGSGAMMKYVQQG----LFHPSSTVRKRYWTVYN 943 (975)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHh----ccCchHHHHHHHHHHHh
Confidence 99999999999999876665554433 44677788765554444
No 23
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.84 E-value=7.9e-19 Score=183.64 Aligned_cols=274 Identities=20% Similarity=0.185 Sum_probs=213.1
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHH
Q 009975 138 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVP 217 (521)
Q Consensus 138 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~ 217 (521)
++.+...+.|+++.||..|+..|+.+.. +..++.+...++|+++.||..++..+..+....+ -.+
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-------~~~ 687 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-------PAP 687 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-------chH
Confidence 4566667789999999999999987642 3467778888899999999999999988754221 135
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHH
Q 009975 218 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF 297 (521)
Q Consensus 218 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l 297 (521)
.+...++|+++.||.+|+.+|+.+.. +. ...+...+.|+++.||..++.+++.+.. .+.+
T Consensus 688 ~L~~~L~~~d~~VR~~A~~aL~~~~~--~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~l 747 (897)
T PRK13800 688 ALRDHLGSPDPVVRAAALDVLRALRA--GD-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VESV 747 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhcc--CC-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHHH
Confidence 66777888999999999999988642 11 1234567799999999999999988631 1345
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHH
Q 009975 298 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ 377 (521)
Q Consensus 298 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ 377 (521)
..++.|++++||..++.+|+.+...- ...++.+..+++|+++.||..++..|+.+... +.+.+.+..
T Consensus 748 ~~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~~ 814 (897)
T PRK13800 748 AGAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAATA 814 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHHH
Confidence 67899999999999999999886521 22367788889999999999999988766321 123345678
Q ss_pred HcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhc
Q 009975 378 WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS 457 (521)
Q Consensus 378 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l 457 (521)
.++|+++.||.+|+.+|+.+. .+..++.|...++|+++.+|..++.+|+.+. + .+...+.+...+
T Consensus 815 aL~d~d~~VR~~Aa~aL~~l~--------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----~~~a~~~L~~al 879 (897)
T PRK13800 815 ALRASAWQVRQGAARALAGAA--------ADVAVPALVEALTDPHLDVRKAAVLALTRWP---G----DPAARDALTTAL 879 (897)
T ss_pred HhcCCChHHHHHHHHHHHhcc--------ccchHHHHHHHhcCCCHHHHHHHHHHHhccC---C----CHHHHHHHHHHH
Confidence 889999999999999998653 2346688888999999999999999999982 1 234567788999
Q ss_pred CCCCchHHHHHHHHHHH
Q 009975 458 KDRVPNIKFNVAKVLQS 474 (521)
Q Consensus 458 ~d~~~~VR~~a~~~l~~ 474 (521)
+|+++.||..|.++|..
T Consensus 880 ~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 880 TDSDADVRAYARRALAH 896 (897)
T ss_pred hCCCHHHHHHHHHHHhh
Confidence 99999999999999863
No 24
>PRK09687 putative lyase; Provisional
Probab=99.84 E-value=6.5e-19 Score=157.44 Aligned_cols=255 Identities=15% Similarity=0.073 Sum_probs=196.9
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhh
Q 009975 175 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 254 (521)
Q Consensus 175 ~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 254 (521)
.-.+.+...+.|++..||..++..|+.+. .+.+++.+.++++|+++.+|..++.+|+.+...-.. ....
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~--------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a 91 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRG--------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNV 91 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcC--------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHH
Confidence 34455666778999999999999888653 356788888899999999999999999997652111 2345
Q ss_pred hHHHHHh-ccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHH
Q 009975 255 LPCVKEL-SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 333 (521)
Q Consensus 255 ~~~l~~~-~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 333 (521)
++.+..+ .+|+++.||..++.++|.+...-. .....+++.+...+.|+++.||..++.+|+.+.. +..+
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~ai 161 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--------EAAI 161 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--------HHHH
Confidence 6777665 688999999999999998753211 1123456667778889999999999999987653 5678
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHH
Q 009975 334 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 413 (521)
Q Consensus 334 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 413 (521)
+.+..+++|++|.||..++.+|+.+.. + .+...+.+...+.|.++.||..|+.+|+.+- ....+|.
T Consensus 162 ~~L~~~L~d~~~~VR~~A~~aLg~~~~--~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~--------~~~av~~ 227 (280)
T PRK09687 162 PLLINLLKDPNGDVRNWAAFALNSNKY--D----NPDIREAFVAMLQDKNEEIRIEAIIGLALRK--------DKRVLSV 227 (280)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcCCC--C----CHHHHHHHHHHhcCCChHHHHHHHHHHHccC--------ChhHHHH
Confidence 889999999999999999999988721 1 2357788888899999999999999998753 2467888
Q ss_pred HHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcC-CCCchHHHHHHHHHHH
Q 009975 414 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK-DRVPNIKFNVAKVLQS 474 (521)
Q Consensus 414 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~-d~~~~VR~~a~~~l~~ 474 (521)
|.+.+++++ +|..++.++|.+.. +..+|.+.++++ +++..|+..+.+++..
T Consensus 228 Li~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 228 LIKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 888888877 46678888888864 467888988886 8899999999888764
No 25
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=7.3e-17 Score=147.86 Aligned_cols=396 Identities=17% Similarity=0.188 Sum_probs=300.5
Q ss_pred HHHhcCCCChHHHHHHHHhHHHHHHhhCchhhH----HHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh--hhhhh
Q 009975 102 YTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK----TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAH 175 (521)
Q Consensus 102 l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~----~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ 175 (521)
+..-++|+-.+.|++|+..+..+++.+-...-. ..+-.+..+...+.+.+.|+.+.-.+...+-.++.+ .+...
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 345567888999999999999999876543322 223335566667777777888777777776666654 35677
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HH
Q 009975 176 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LA 250 (521)
Q Consensus 176 l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~ 250 (521)
++|.+...+.|++..||..+|+.+..+++...++.. .+++...+-++..|.+..||.+ .+.+..+.+.+..+ .+
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte~~~tF 163 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTESASTF 163 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhcccccccc
Confidence 888888999999999999999999999998887654 3678899999999999999865 46666666655322 22
Q ss_pred -HHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHH--HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch--
Q 009975 251 -IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-- 325 (521)
Q Consensus 251 -~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-- 325 (521)
.+.++|.+...+.+.++..|...+.++..+-..-+-+. +...+++.+++++.|++++||.-+-.+++.+...+..
T Consensus 164 sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P 243 (675)
T KOG0212|consen 164 SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP 243 (675)
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 46789999999999999999999999987654433332 3567899999999999999999999989888776542
Q ss_pred hh-HhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhh--hHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHHHHHh
Q 009975 326 DL-LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVY-SIRDAAANNLKRLAEEF 401 (521)
Q Consensus 326 ~~-~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~ 401 (521)
.. -...+++.+..-..++++.++..++.++..+.+..|.+. +.+.++..++.++.|++. ..+..+...-+.+...+
T Consensus 244 ~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 244 SSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV 323 (675)
T ss_pred cccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence 22 125677777777788999999999999999999988874 346677777788888766 57777666655555555
Q ss_pred CHHHH-----HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH--HhhcHHHHHHhhcCCCCchHHHHHHHHHHH
Q 009975 402 GPEWA-----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQS 474 (521)
Q Consensus 402 ~~~~~-----~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~VR~~a~~~l~~ 474 (521)
+.+.. ...++..+...+.+.....|.+++.++..+....+.+. +...+.+.+++.++|++..|-..++..+..
T Consensus 324 s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~ 403 (675)
T KOG0212|consen 324 SSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLAS 403 (675)
T ss_pred hhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence 43322 24677888889999999999999999999998777765 347789999999999999999999999999
Q ss_pred HHhhhchHHHHhhHHHHHHHhcCC
Q 009975 475 LIPIVDQSMVEKTIRPCLVELTED 498 (521)
Q Consensus 475 ~~~~~~~~~~~~~~~~~l~~l~~D 498 (521)
++..-....+.+.+...|..+..|
T Consensus 404 i~~s~~~~~~~~fl~sLL~~f~e~ 427 (675)
T KOG0212|consen 404 ICSSSNSPNLRKFLLSLLEMFKED 427 (675)
T ss_pred HhcCcccccHHHHHHHHHHHHhhh
Confidence 987643333334444444444444
No 26
>PTZ00429 beta-adaptin; Provisional
Probab=99.81 E-value=4.5e-15 Score=148.48 Aligned_cols=462 Identities=12% Similarity=0.072 Sum_probs=284.9
Q ss_pred hhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHH
Q 009975 22 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSI 101 (521)
Q Consensus 22 ~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~ 101 (521)
++-+.++..++|..+|+...-.+...++.-+ + ..-..++.+.+=+++++..+|..|++.++.+- .+.....+.+.
T Consensus 70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~p-e-lalLaINtl~KDl~d~Np~IRaLALRtLs~Ir---~~~i~e~l~~~ 144 (746)
T PTZ00429 70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQP-E-KALLAVNTFLQDTTNSSPVVRALAVRTMMCIR---VSSVLEYTLEP 144 (746)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccCh-H-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---cHHHHHHHHHH
Confidence 3333344445555566555555554444322 1 11133444444444556667777766665533 23346667777
Q ss_pred HHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh--hhhhhhHHH
Q 009975 102 YTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPV 179 (521)
Q Consensus 102 l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~ 179 (521)
+.+.+.|.+|-||+.|+-++..+....+.......+.+.+.+++.|.++.|...|+.++..+.+.-+.. .....+..
T Consensus 145 lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~- 223 (746)
T PTZ00429 145 LRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNR- 223 (746)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHH-
Confidence 777777777888888877777776654432223445666667777777777777777777776543321 01111212
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH---HHHhhh
Q 009975 180 IVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL---AIQHIL 255 (521)
Q Consensus 180 l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~ 255 (521)
+...+.+-++--+..+.+.+. ...+.+ .....++..+...++..++.|...|++++-.+....+++. ....+.
T Consensus 224 Ll~~L~e~~EW~Qi~IL~lL~---~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~ 300 (746)
T PTZ00429 224 LVYHLPECNEWGQLYILELLA---AQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVN 300 (746)
T ss_pred HHHHhhcCChHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 222222222223334444442 221111 1123577777777888888999999998888776544332 122333
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHH
Q 009975 256 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 335 (521)
Q Consensus 256 ~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 335 (521)
+.+..+. ..++.+|..++..+..+....+. .+..+ +..|.-..+|+. .||...+..+..++..-. . ..++..
T Consensus 301 ~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P~-lf~~~-~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane~N---v-~~IL~E 372 (746)
T PTZ00429 301 TALLTLS-RRDAETQYIVCKNIHALLVIFPN-LLRTN-LDSFYVRYSDPP-FVKLEKLRLLLKLVTPSV---A-PEILKE 372 (746)
T ss_pred HHHHHhh-CCCccHHHHHHHHHHHHHHHCHH-HHHHH-HHhhhcccCCcH-HHHHHHHHHHHHHcCccc---H-HHHHHH
Confidence 5555553 45667899998888777654432 22222 455556667775 589999888888876422 2 567788
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHH
Q 009975 336 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 415 (521)
Q Consensus 336 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 415 (521)
|.++..+.+..++..++.+++.++..++. ..+..+..++.++++...-+ ..++..+..+...+... .+++.+.
T Consensus 373 L~eYa~d~D~ef~r~aIrAIg~lA~k~~~--~a~~cV~~Ll~ll~~~~~~v-~e~i~vik~IlrkyP~~----~il~~L~ 445 (746)
T PTZ00429 373 LAEYASGVDMVFVVEVVRAIASLAIKVDS--VAPDCANLLLQIVDRRPELL-PQVVTAAKDIVRKYPEL----LMLDTLV 445 (746)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHCccH----HHHHHHH
Confidence 88888899999999999999999977654 35677888888887755433 45677777777665432 2445555
Q ss_pred hhh---cCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHH
Q 009975 416 EMI---NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCL 492 (521)
Q Consensus 416 ~~l---~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l 492 (521)
..+ .-.+...|.+.+|.+|..+..+.. .+.++..++.-+.+..+.||.+.+.+..++.-..+.+ ....+...|
T Consensus 446 ~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~-~~~~l~~vL 521 (746)
T PTZ00429 446 TDYGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQG-MEPQLNRVL 521 (746)
T ss_pred HhhcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHH-HHHHHHHHH
Confidence 432 224678899999999999876543 2456655566667778899999999988887764432 344556666
Q ss_pred HHhcC-CCCccHHHHHHHHH
Q 009975 493 VELTE-DPDVDVRFFATQAI 511 (521)
Q Consensus 493 ~~l~~-D~~~~vr~~a~~al 511 (521)
..+.+ |.+++||..|.--+
T Consensus 522 ~~~t~~~~d~DVRDRA~~Y~ 541 (746)
T PTZ00429 522 ETVTTHSDDPDVRDRAFAYW 541 (746)
T ss_pred HHHHhcCCChhHHHHHHHHH
Confidence 66644 57889999987543
No 27
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.80 E-value=2.9e-15 Score=145.23 Aligned_cols=429 Identities=16% Similarity=0.213 Sum_probs=283.1
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh
Q 009975 90 APDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 169 (521)
Q Consensus 90 ~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 169 (521)
++++....+...+.++++|.+++|+..|++++|-+++.+++.......-.+...++.+ .+..|..+.-.|......+++
T Consensus 40 Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~-keq~rdissi~Lktvi~nl~P 118 (1233)
T KOG1824|consen 40 LDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSG-KEQLRDISSIGLKTVIANLPP 118 (1233)
T ss_pred ccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccc-hhhhccHHHHHHHHHHhcCCC
Confidence 3444466788899999999999999999999999999888766555555555554443 344465555555555555554
Q ss_pred h-------hhhhhhHHHHHHhc--CCCChHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCChHHHHHHHHHhH
Q 009975 170 Q-------DCVAHILPVIVNFS--QDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKV 238 (521)
Q Consensus 170 ~-------~~~~~l~~~l~~~~--~d~~~~vR~~~~~~l~~i~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l 238 (521)
. ...+.+.|.+.... +.+...+|..++..++.+...+|.-.. -..++..+.--+..+...||+.|+.++
T Consensus 119 ~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l 198 (1233)
T KOG1824|consen 119 SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITAL 198 (1233)
T ss_pred ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence 1 23344666666543 345666999999999888887774332 234556666667778889999999999
Q ss_pred HHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHH--HHHhHHHHHHHhh---cCCChHHHHHHH
Q 009975 239 TKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLL---KDEFPDVRLNII 313 (521)
Q Consensus 239 ~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l---~d~~~~vr~~a~ 313 (521)
+.++...+.+.+...+-..+..+.+..+...-+..+++++.++...|... ..+.++|.+.+.+ +..+++.|+.++
T Consensus 199 ~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~l 278 (1233)
T KOG1824|consen 199 GHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCL 278 (1233)
T ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHH
Confidence 99999988877655555555666665665555667788888887777644 2457889888888 778899999999
Q ss_pred HHHHHhhhhhchhhH--hhhHHHHHHHHh----------------------------------cCCChHHHHHHHHHhHH
Q 009975 314 SKLDQVNQVIGIDLL--SQSLLPAIVELA----------------------------------EDRHWRVRLAIIEYIPL 357 (521)
Q Consensus 314 ~~l~~~~~~~~~~~~--~~~~~~~l~~~~----------------------------------~~~~~~vr~~~~~~l~~ 357 (521)
++++.+......+.. .+.++....+.+ +|-+|.||.++++++..
T Consensus 279 Qale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a 358 (1233)
T KOG1824|consen 279 QALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEA 358 (1233)
T ss_pred HHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHH
Confidence 999999876554321 123333332222 23379999999999987
Q ss_pred HHhhhCh--hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH--------------------------------
Q 009975 358 LASQLGV--GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-------------------------------- 403 (521)
Q Consensus 358 l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-------------------------------- 403 (521)
+...-.+ ..+.+.+-|.+...+++.+..|+.-.+.++-.+....+.
T Consensus 359 ~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVk 438 (1233)
T KOG1824|consen 359 VISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVK 438 (1233)
T ss_pred HHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHH
Confidence 7644322 123445556666666666666665555554444332210
Q ss_pred --------------------------------HHHHhhhHHHHHhhhcCcc--hHHHHHHHHHHHHhhcccChHHHh---
Q 009975 404 --------------------------------EWAMQHITPQVLEMINNPH--YLYRMTILRAISLLAPVMGSEITC--- 446 (521)
Q Consensus 404 --------------------------------~~~~~~l~~~l~~~l~~~~--~~~r~~a~~~l~~l~~~~~~~~~~--- 446 (521)
......++|.+...++|.+ ...+..++.++..+....+++.|.
T Consensus 439 ai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~ 518 (1233)
T KOG1824|consen 439 AIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHL 518 (1233)
T ss_pred HHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccch
Confidence 0011224444444444432 455666666666666656666654
Q ss_pred hcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc---------h-HHHHhhHHHHHHHh-cCCCCccHHHHHHHHHHHHH
Q 009975 447 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD---------Q-SMVEKTIRPCLVEL-TEDPDVDVRFFATQAIQSID 515 (521)
Q Consensus 447 ~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~---------~-~~~~~~~~~~l~~l-~~D~~~~vr~~a~~al~~l~ 515 (521)
+.+.|.+.....|+-+.|-..|+.+...++..+. . +++...+--.+.++ .+|.|.+||..|..+++.+.
T Consensus 519 ~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i 598 (1233)
T KOG1824|consen 519 SALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQII 598 (1233)
T ss_pred hhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 3456777888899999998888888888776542 1 22323333344454 68999999999999999877
Q ss_pred Hhhc
Q 009975 516 HVMM 519 (521)
Q Consensus 516 ~~~~ 519 (521)
-.+|
T Consensus 599 ~~fg 602 (1233)
T KOG1824|consen 599 ANFG 602 (1233)
T ss_pred HHHh
Confidence 6654
No 28
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=4.3e-15 Score=136.41 Aligned_cols=444 Identities=15% Similarity=0.132 Sum_probs=311.9
Q ss_pred hhhcCchhHHHHHHHHHHHHHHhhcCh----hHHHHhHHHHHHHhhcCCCCcchhhhh-hhhhhhcCCC--ChHHHHHHH
Q 009975 27 TLCTVEETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLVKRLAAGEWFTARVSAC-GLFHIAYPSA--PDILKTELR 99 (521)
Q Consensus 27 ~l~~~~~~~vR~~a~~~l~~i~~~~~~----~~~~~~l~p~i~~~~~~~~~~~r~~~~-~~~~~~~~~~--~~~~~~~l~ 99 (521)
+-++|+--+-|.+|.-.+..+.+.+-. +++.+.+-....+.....+...|..+. ++......-. .......++
T Consensus 7 r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv 86 (675)
T KOG0212|consen 7 RGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIV 86 (675)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhh
Confidence 344566667799988888888887643 344433333445555544433343332 2222211111 112577888
Q ss_pred HHHHHhcCCCChHHHHHHHHhHHHHHHhhCchh--hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhh----hh
Q 009975 100 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH--LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD----CV 173 (521)
Q Consensus 100 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~ 173 (521)
+.+..+.+|.+-.||..|++.+.++++....+. +.+.+...+-++..|.+.+||.+| +.+..+.+.+..+. ..
T Consensus 87 ~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tFsL 165 (675)
T KOG0212|consen 87 PPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTFSL 165 (675)
T ss_pred HHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccccccCH
Confidence 888899999999999999999999998877653 678888999999999999998766 66666665544332 34
Q ss_pred hhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--H
Q 009975 174 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--L 249 (521)
Q Consensus 174 ~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~ 249 (521)
+.++|++.+-+.+.++.+|...+.++.-+-..-+-+. ..+.+++.+.++++|+..+||..+-.+++.+...+..+ .
T Consensus 166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s 245 (675)
T KOG0212|consen 166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS 245 (675)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence 6699999999999999999999999875533222121 23679999999999999999999999898888876432 2
Q ss_pred -HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHH--HHhHHHHHHHhhcCCCh-HHHHHHHHHHHHhhhhhch
Q 009975 250 -AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT--IEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGI 325 (521)
Q Consensus 250 -~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~--~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~ 325 (521)
-.+.+++.+......+++.++..++.++..+.+..|++.. ...++..++.++.|.++ .++..+...-+.+.+..+.
T Consensus 246 ~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~ 325 (675)
T KOG0212|consen 246 MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSS 325 (675)
T ss_pred cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhh
Confidence 2355778888888999999999999999999999988653 34566667777777766 3555555444444443332
Q ss_pred hhH-----hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhh--HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 009975 326 DLL-----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLA 398 (521)
Q Consensus 326 ~~~-----~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 398 (521)
+.. ...++..+.+.+.+.....|.++++++..+....+.+.+ .+.+.+.++.-+.|++.+|-..++..++.++
T Consensus 326 ~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~ 405 (675)
T KOG0212|consen 326 ERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASIC 405 (675)
T ss_pred hhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHh
Confidence 221 147888899999999999999999999999988888744 4678888899999999999999999999988
Q ss_pred HHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHH
Q 009975 399 EEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 475 (521)
Q Consensus 399 ~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~ 475 (521)
..-..... .+.+..+.+++....--++..+.-.+..++..+..+.+...+-..+.. .++-+--.....+|..+
T Consensus 406 ~s~~~~~~-~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~---e~nl~FAstMV~~Ln~i 478 (675)
T KOG0212|consen 406 SSSNSPNL-RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILER---EENLKFASTMVQALNTI 478 (675)
T ss_pred cCcccccH-HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhc---cccchHHHHHHHHHHhh
Confidence 65432222 234445555666666666677777788888777777665554444433 23333344444555444
No 29
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.79 E-value=1.4e-14 Score=133.30 Aligned_cols=468 Identities=14% Similarity=0.129 Sum_probs=291.3
Q ss_pred HhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCC-CCcchhhhhhhh---------------hhhcC
Q 009975 25 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLF---------------HIAYP 88 (521)
Q Consensus 25 l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~-~~~~r~~~~~~~---------------~~~~~ 88 (521)
.++-.-++|+++|..|...+.++... ++.+++.=..+.+++++ ....|..+-..+ ...+.
T Consensus 10 ~~n~vLspD~n~rl~aE~ql~~l~~~----dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~ 85 (858)
T COG5215 10 GKNHVLSPDPNARLRAEAQLLELQSG----DFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWL 85 (858)
T ss_pred HhcccCCCCCCccccHHHHHHHhccc----cHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhc
Confidence 34434468999999999988877653 22222222223344433 334454332222 12233
Q ss_pred CCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCCh-hHHHHHHHHHHHHhhhc
Q 009975 89 SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQD-SVRLLAVEGCAALGKLL 167 (521)
Q Consensus 89 ~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~-~vr~~a~~~l~~l~~~~ 167 (521)
..+.+.++.+.......+.++.|..-..|...++.++..--+...|+.++..+.....++.+ .+++.++.+++.+++..
T Consensus 86 ~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~ 165 (858)
T COG5215 86 GMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE 165 (858)
T ss_pred cCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc
Confidence 35666788888888888999999999999999999998776677899999999888888766 78999999999999988
Q ss_pred Chhhhhh---h-hHHHHHHhc-CCCChHHHHHHHHHHHHHHH----HhCCCccccchHHHHHHhcCCChHHHHHHHHHhH
Q 009975 168 EPQDCVA---H-ILPVIVNFS-QDKSWRVRYMVANQLYELCE----AVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 238 (521)
Q Consensus 168 ~~~~~~~---~-l~~~l~~~~-~d~~~~vR~~~~~~l~~i~~----~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 238 (521)
.++.... . ++.+..... +.++..||.++..++..-.- .+..+...+.++....+..+.++.+++.+|..+|
T Consensus 166 ~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl 245 (858)
T COG5215 166 APEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCL 245 (858)
T ss_pred CHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHH
Confidence 7753322 2 344444433 45788899999998866222 2223333456777777788889999999999999
Q ss_pred HHHHhhhCH--HHHHHh-hhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHH
Q 009975 239 TKFCRILNP--ELAIQH-ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 315 (521)
Q Consensus 239 ~~l~~~~~~--~~~~~~-~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 315 (521)
..+....-. ..+.+. +..+..+.+.+++..|...+++..+.++..--+-.....-+| +.|.-..
T Consensus 246 ~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~p--------e~p~qn~----- 312 (858)
T COG5215 246 NKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLP--------EVPAQNH----- 312 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcc--------cCchhhc-----
Confidence 988775311 112222 223334456777888888887777666521100000000011 0000000
Q ss_pred HHHhhhhhchhhHhhhHHHHHHHHhc-------CCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHH
Q 009975 316 LDQVNQVIGIDLLSQSLLPAIVELAE-------DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRD 388 (521)
Q Consensus 316 l~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~ 388 (521)
.++. . -...++|.+.+++. +.+|.+-.++..++..+++..|.....+ ++..+.+.+..++|.-|+
T Consensus 313 --~fa~----a-av~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~p-Vl~FvEqni~~~~w~nre 384 (858)
T COG5215 313 --GFAR----A-AVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRP-VLGFVEQNIRSESWANRE 384 (858)
T ss_pred --chHH----H-HHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHH-HHHHHHHhccCchhhhHH
Confidence 0000 0 01345666655542 3468888888888888888877765444 666667778888888888
Q ss_pred HHHHHHHHHHHHhCHH---HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh----HHHhhcHHHHHHhhcCCCC
Q 009975 389 AAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS----EITCSRLLPVVINASKDRV 461 (521)
Q Consensus 389 ~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~il~~l~~~l~d~~ 461 (521)
++..++|.+.+.-..+ .+..+.+|.+.....|+...++.++.++++.++++... ..............+.| .
T Consensus 385 aavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~ 463 (858)
T COG5215 385 AAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-C 463 (858)
T ss_pred HHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-c
Confidence 8888888876532221 23456677777777788888888888888888875432 22222333344445555 4
Q ss_pred chHHHHHHHHHHHHHhhhchHH---------HHhhHHHHHHHh--cCCCCccHHHHHHHHHHHHHHhh
Q 009975 462 PNIKFNVAKVLQSLIPIVDQSM---------VEKTIRPCLVEL--TEDPDVDVRFFATQAIQSIDHVM 518 (521)
Q Consensus 462 ~~VR~~a~~~l~~~~~~~~~~~---------~~~~~~~~l~~l--~~D~~~~vr~~a~~al~~l~~~~ 518 (521)
+.+-.+..+....+..++.+.. +...++..|.+. ..+.+.+.|..+-+|++++..+.
T Consensus 464 p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~ 531 (858)
T COG5215 464 PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILIC 531 (858)
T ss_pred chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhc
Confidence 5566666677767666654321 123333444332 23667788888888888776654
No 30
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=4.9e-15 Score=150.52 Aligned_cols=497 Identities=19% Similarity=0.205 Sum_probs=328.6
Q ss_pred HHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhH-H---HHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCC---
Q 009975 18 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD-L---VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA--- 90 (521)
Q Consensus 18 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~-~---~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~--- 90 (521)
...+...+..++.+++++.|++++-=+-.+.+.++... + .+++...+..+..|++.-.+-.|..-++..|+-.
T Consensus 816 ~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~ 895 (1702)
T KOG0915|consen 816 ETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS 895 (1702)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch
Confidence 34577888899999999999999988888887776221 1 1233333333333332212211111111111100
Q ss_pred -------------------------------------Ch-----HHHHHHH------------HHHHHhcCC-CChHHHH
Q 009975 91 -------------------------------------PD-----ILKTELR------------SIYTQLCQD-DMPMVRR 115 (521)
Q Consensus 91 -------------------------------------~~-----~~~~~l~------------~~l~~l~~~-~~~~vr~ 115 (521)
++ .+.+++. --+.++..+ ..|.=|+
T Consensus 896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~ 975 (1702)
T KOG0915|consen 896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKK 975 (1702)
T ss_pred hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhccc
Confidence 00 0233333 334444444 3678899
Q ss_pred HHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcC--hhhhhhhhHHHHHHhcCCCChHH
Q 009975 116 SAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE--PQDCVAHILPVIVNFSQDKSWRV 191 (521)
Q Consensus 116 ~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~~~d~~~~v 191 (521)
.|+..++.+++..++ +.+...++|-+.+.--|++..|+.+-..+|+.+..--. -+.+.++|+.-+...+.+.-|+|
T Consensus 976 GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRV 1055 (1702)
T KOG0915|consen 976 GAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRV 1055 (1702)
T ss_pred chhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 999999999988765 34677889999999999999999999999998875421 14567788888888999999999
Q ss_pred HHHHHHHHHHHHHHhCCCccc---cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh----------CHHHHHHhhhHHH
Q 009975 192 RYMVANQLYELCEAVGPEPTR---MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL----------NPELAIQHILPCV 258 (521)
Q Consensus 192 R~~~~~~l~~i~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----------~~~~~~~~~~~~l 258 (521)
|.++|-++..+.+.-+.+... ++++-.+.+...|-.+.||.+|-.+...+++.+ ....+...++|++
T Consensus 1056 ReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfL 1135 (1702)
T KOG0915|consen 1056 REASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFL 1135 (1702)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHH
Confidence 999999999998765544333 345555666677778899999877776666654 1234566788887
Q ss_pred HHh-ccCCcHHHHHHHHHHHHccccccChHH--HHHhHHHHHHHhhcCCChHH-------------------HHHHH---
Q 009975 259 KEL-SSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDV-------------------RLNII--- 313 (521)
Q Consensus 259 ~~~-~~d~~~~vr~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~~~~v-------------------r~~a~--- 313 (521)
..- .-.+-..||..++..+..+++..|... ...+++|.+......-++.| |..++
T Consensus 1136 l~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~akss 1215 (1702)
T KOG0915|consen 1136 LDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSS 1215 (1702)
T ss_pred hccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCC
Confidence 532 236667899999999999988888743 34578888888777665554 22222
Q ss_pred ---HHHHHhhhhhchhhHhhhHHHHHHHHhcC-CChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCcHHHH
Q 009975 314 ---SKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIR 387 (521)
Q Consensus 314 ---~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr 387 (521)
++++.....+....+ +.++|.+.++... -.-..|..++..+..++..+|.+ ++..+++..++..++|.++.+|
T Consensus 1216 pmmeTi~~ci~~iD~~vL-eelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~ 1294 (1702)
T KOG0915|consen 1216 PMMETINKCINYIDISVL-EELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVR 1294 (1702)
T ss_pred cHHHHHHHHHHhhhHHHH-HHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHH
Confidence 223333444444444 7888988887644 45667888899999999999876 5778899999999999999999
Q ss_pred HHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh--HHHhhcHHHHHHhhcCCCCchHH
Q 009975 388 DAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDRVPNIK 465 (521)
Q Consensus 388 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~l~d~~~~VR 465 (521)
.+...+++.++..-.++....-+-..+..++.+... .+..++..+..++..... +.+...++|.++-...+..
T Consensus 1295 kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es-~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~---- 1369 (1702)
T KOG0915|consen 1295 KAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDES-LKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEE---- 1369 (1702)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCC-ccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHH----
Confidence 999999999998776655443333344444443222 124445555544443222 2356789999887766651
Q ss_pred HHHHHHHHHHHhhh-----ch-H-HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 009975 466 FNVAKVLQSLIPIV-----DQ-S-MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 520 (521)
Q Consensus 466 ~~a~~~l~~~~~~~-----~~-~-~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~~ 520 (521)
.+-......+...+ |. + ...+.+.+...+..++..+.+|..+++++..++....+
T Consensus 1370 Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~ss 1431 (1702)
T KOG0915|consen 1370 KANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSS 1431 (1702)
T ss_pred HHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccc
Confidence 12223333333222 11 2 23355667777778888999999999999888765544
No 31
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.78 E-value=9.9e-17 Score=159.00 Aligned_cols=298 Identities=20% Similarity=0.219 Sum_probs=212.3
Q ss_pred hhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCC------CccccchHHHHHHhc
Q 009975 150 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP------EPTRMDLVPAYVRLL 223 (521)
Q Consensus 150 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~------~~~~~~l~~~l~~~l 223 (521)
...|..|++.+..++.++.++...+.++|.+..+..|+...||..|+..+.++...+.+ ..+++.++|.+..++
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~ 516 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLL 516 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhh
Confidence 45577777777777777777777777777777777777777777777777776665542 233456777777777
Q ss_pred CC-ChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHH--HhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHh
Q 009975 224 RD-NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK--ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 300 (521)
Q Consensus 224 ~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~--~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~ 300 (521)
.| ....||.+-+.+|+.++..... |.+.. ..+. .+.++++.. ..+.-...-+.....+.+-..+..+
T Consensus 517 ~d~~~~~vRiayAsnla~LA~tA~r--Fle~~-q~~~~~g~~n~~nse-------t~~~~~~~~~~~~L~~~V~~~v~sL 586 (1431)
T KOG1240|consen 517 NDSSAQIVRIAYASNLAQLAKTAYR--FLELT-QELRQAGMLNDPNSE-------TAPEQNYNTELQALHHTVEQMVSSL 586 (1431)
T ss_pred ccCccceehhhHHhhHHHHHHHHHH--HHHHH-HHHHhcccccCcccc-------cccccccchHHHHHHHHHHHHHHHH
Confidence 77 5567777777777777764321 11100 0010 112333221 0000000001111223344566788
Q ss_pred hcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcC
Q 009975 301 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ 380 (521)
Q Consensus 301 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 380 (521)
+.|+.+.||++.++++..++..+|.+.-.+.+++++..+++|++|..|.++.+.+..++-.+|.....++++|++.+.+.
T Consensus 587 lsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~lt 666 (1431)
T KOG1240|consen 587 LSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLT 666 (1431)
T ss_pred HcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhcc
Confidence 99999999999999999999999988877889999999999999999999999999999999998889999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCH-HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhc
Q 009975 381 DKVYSIRDAAANNLKRLAEEFGP-EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS 457 (521)
Q Consensus 381 d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l 457 (521)
|.++.|-..|+.++..+++.--- .....+++.....++-.||..+|.+++..+..+...++.-+..-.++|.+-..+
T Consensus 667 D~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl 744 (1431)
T KOG1240|consen 667 DGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFL 744 (1431)
T ss_pred CcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhh
Confidence 99999999999999998864211 122345666666788899999999999999999998887655444444444333
No 32
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1.8e-15 Score=153.66 Aligned_cols=336 Identities=17% Similarity=0.159 Sum_probs=240.7
Q ss_pred hhHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC--HHH
Q 009975 175 HILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PEL 249 (521)
Q Consensus 175 ~l~~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~ 249 (521)
+++--+.++.++ ..|.-|+.++-.++.++...+... ....++|-+.++-.|++..|+.+....+..+...-. -+.
T Consensus 956 dLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~ 1035 (1702)
T KOG0915|consen 956 DLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDE 1035 (1702)
T ss_pred HHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHH
Confidence 344445555554 689999999999999998776543 346899999999999999999999988888765321 124
Q ss_pred HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHH---HHHhhcCCChHHHHHHHHH---HHHhhhhh
Q 009975 250 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI---FLSLLKDEFPDVRLNIISK---LDQVNQVI 323 (521)
Q Consensus 250 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~---l~~~l~d~~~~vr~~a~~~---l~~~~~~~ 323 (521)
+.+.++.-+...+.++.|+||++.+-++..+.+.-+.+...+++..+ ++..+.|-.+.||.++-.+ +++++-.+
T Consensus 1036 y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~ 1115 (1702)
T KOG0915|consen 1036 YLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRI 1115 (1702)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566666677778999999999999999998877766665555444 4455567677888776544 44443322
Q ss_pred c-------hhhHhhhHHHHHHH-HhcCCChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCcHHH-------
Q 009975 324 G-------IDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSI------- 386 (521)
Q Consensus 324 ~-------~~~~~~~~~~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~v------- 386 (521)
+ .......++|.+.+ -.-+.-..||...+..+..+++..|.. .+.++++|.+++....-++.|
T Consensus 1116 ~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r 1195 (1702)
T KOG0915|consen 1116 CDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLR 1195 (1702)
T ss_pred cccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHh
Confidence 2 12234778888876 233777899999999999999999875 556788888888776544433
Q ss_pred ------------HHHHH------HHHHHHHHHhCHHHHHhhhHHHHHhhhcCc-chHHHHHHHHHHHHhhcccChHH--H
Q 009975 387 ------------RDAAA------NNLKRLAEEFGPEWAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSEI--T 445 (521)
Q Consensus 387 ------------r~~a~------~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~~~--~ 445 (521)
|..++ +++..++.+... ...++++|.+.+.+..+ .-..|..+..++..+...+|.+. +
T Consensus 1196 ~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~-~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~ 1274 (1702)
T KOG0915|consen 1196 LINIETEALDTLRASAAKSSPMMETINKCINYIDI-SVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY 1274 (1702)
T ss_pred hhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhH-HHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc
Confidence 22222 223333322221 23577889888877654 56778899999999998888654 6
Q ss_pred hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHH
Q 009975 446 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQ 512 (521)
Q Consensus 446 ~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~ 512 (521)
...++..++.+++|.++.||.+.+.+.+.++..-.++..+..+...+..+..+.++.- ..++.++-
T Consensus 1275 sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~-siscatis 1340 (1702)
T KOG0915|consen 1275 SGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLK-SISCATIS 1340 (1702)
T ss_pred hhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCcc-chhHHHHH
Confidence 6789999999999999999999999999999987777777777777776665554432 34444433
No 33
>PTZ00429 beta-adaptin; Provisional
Probab=99.75 E-value=1.1e-13 Score=138.51 Aligned_cols=366 Identities=15% Similarity=0.100 Sum_probs=232.9
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhh
Q 009975 95 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 174 (521)
Q Consensus 95 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 174 (521)
...+++-+..+++.++..+|+-+--.+...++..+ +..-..+..+.+=++|+++.+|..|+++++.+.. ....+
T Consensus 66 vS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~p--elalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~----~~i~e 139 (746)
T PTZ00429 66 VSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQP--EKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV----SSVLE 139 (746)
T ss_pred chHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCh--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc----HHHHH
Confidence 45677777777788888888888777776654322 1222335556666678888999998888876542 33566
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH-HHHHh
Q 009975 175 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-LAIQH 253 (521)
Q Consensus 175 ~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~ 253 (521)
.+.+.+.+.+.|+++.||+.|+-++.++....++......+++.+.+++.|.++.|...|+.+|..+.+..+.. .....
T Consensus 140 ~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~ 219 (746)
T PTZ00429 140 YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNE 219 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHH
Confidence 77788888889999999999999888886644433334567888888889999999999999888887654321 11222
Q ss_pred hhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHh---h
Q 009975 254 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS---Q 330 (521)
Q Consensus 254 ~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~---~ 330 (521)
.+..+...+.+-+++-+...++.+....+. .+.....++..+...++..++.|...|+..+-.+.....++... .
T Consensus 220 ~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~--~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~ 297 (746)
T PTZ00429 220 WVNRLVYHLPECNEWGQLYILELLAAQRPS--DKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV 297 (746)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 333344444555566666777666543221 12224567777788888888889888888888776544333221 1
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhh
Q 009975 331 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI 410 (521)
Q Consensus 331 ~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 410 (521)
.+.+.+..+ .+.++.+|..++..+..+.... +..+.++ +..++...+|+.. ||...++.+-.++..-. .+.+
T Consensus 298 rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~-P~lf~~~-~~~Ff~~~~Dp~y-IK~~KLeIL~~Lane~N----v~~I 369 (746)
T PTZ00429 298 RVNTALLTL-SRRDAETQYIVCKNIHALLVIF-PNLLRTN-LDSFYVRYSDPPF-VKLEKLRLLLKLVTPSV----APEI 369 (746)
T ss_pred HHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC-HHHHHHH-HHhhhcccCCcHH-HHHHHHHHHHHHcCccc----HHHH
Confidence 233344444 3456778888888887777654 3334333 4555556667665 77777777766654322 2446
Q ss_pred HHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh
Q 009975 411 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 479 (521)
Q Consensus 411 ~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~ 479 (521)
+..|.++..+.+...+..++.++|.++..+.. ..+.++..+.+++++....+ ..++.++..+...+
T Consensus 370 L~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~--~a~~cV~~Ll~ll~~~~~~v-~e~i~vik~Ilrky 435 (746)
T PTZ00429 370 LKELAEYASGVDMVFVVEVVRAIASLAIKVDS--VAPDCANLLLQIVDRRPELL-PQVVTAAKDIVRKY 435 (746)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHC
Confidence 66667777777777778888888887765432 34556666666665543322 24455555554443
No 34
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.3e-13 Score=128.85 Aligned_cols=338 Identities=14% Similarity=0.133 Sum_probs=246.9
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhhhcCh----hhhhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHh---CCCc
Q 009975 139 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAV---GPEP 210 (521)
Q Consensus 139 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~---~~~~ 210 (521)
+.+.....+++...+..+...+..+.+.-.. +....-++|.+..++. +.++.++..++.++..|+..- ....
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 3333344444444466666666555544221 1233457777777664 778999999999999998632 2344
Q ss_pred cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhhhHHHHHhccCCcH-HHHHHHHHHHHccccccCh
Q 009975 211 TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQ-HVRSALASVIMGMAPLLGK 286 (521)
Q Consensus 211 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~-~vr~~~~~~l~~i~~~~~~ 286 (521)
.....+|.|.+++.+++..|++-|+.+|+.++...+.. .....+++.+..++..+.. ...+.+.+++.+++....+
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P 228 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP 228 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence 55788999999999999999999999999988764332 1223355666666655544 6777889999999876632
Q ss_pred ---HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch---hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHh
Q 009975 287 ---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 360 (521)
Q Consensus 287 ---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~ 360 (521)
-.....++|.+..++.+.+++|...|++++..+...... ..+...+.|.+.+++.+.+..++..++.+++.++.
T Consensus 229 ~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt 308 (514)
T KOG0166|consen 229 SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT 308 (514)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee
Confidence 234568999999999999999999999999988754321 12335778999999999999999999999998765
Q ss_pred hhChh---hhHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHhCHH-----HHHhhhHHHHHhhhcCcchHHHHHHHH
Q 009975 361 QLGVG---FFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPE-----WAMQHITPQVLEMINNPHYLYRMTILR 431 (521)
Q Consensus 361 ~~~~~---~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~l~~~l~~~l~~~~~~~r~~a~~ 431 (521)
.-+.. ......+|.+..++. .+...+|+.|+..++.+.. |.. .+...++|.|...+...+++.|..|++
T Consensus 309 G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAaw 386 (514)
T KOG0166|consen 309 GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAW 386 (514)
T ss_pred ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHH
Confidence 43332 223457888888888 5666799999999999976 332 234679999999999999999999999
Q ss_pred HHHHhhcccChHHH----hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 009975 432 AISLLAPVMGSEIT----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 478 (521)
Q Consensus 432 ~l~~l~~~~~~~~~----~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~ 478 (521)
+++.+......+.. ...+++.+..+|.-++..+-..++.++..+.+.
T Consensus 387 aIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 387 AISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred HHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 99999986555442 245777788888666666666788888877654
No 35
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.68 E-value=1.9e-15 Score=150.13 Aligned_cols=257 Identities=18% Similarity=0.218 Sum_probs=189.2
Q ss_pred HHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHcccccc------ChHHHHHhHHHHHHHhh
Q 009975 228 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL------GKDATIEQLLPIFLSLL 301 (521)
Q Consensus 228 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~------~~~~~~~~l~~~l~~~l 301 (521)
...|.+|++.|..++..+..+...+.++|++..++.|+...||..|+.++..+.... ....+.++++|.+..++
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~ 516 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLL 516 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhh
Confidence 345566666666666666666666666666666666666666666666666554322 12334566666666666
Q ss_pred cC-CChHHHHHHHHHHHHhhhhhc-------------------------------hhhHhhhHHHHHHHHhcCCChHHHH
Q 009975 302 KD-EFPDVRLNIISKLDQVNQVIG-------------------------------IDLLSQSLLPAIVELAEDRHWRVRL 349 (521)
Q Consensus 302 ~d-~~~~vr~~a~~~l~~~~~~~~-------------------------------~~~~~~~~~~~l~~~~~~~~~~vr~ 349 (521)
.| ....||.+.+.+++.++.... ...+.+.+-.....++.|+.+-||.
T Consensus 517 ~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr 596 (1431)
T KOG1240|consen 517 NDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKR 596 (1431)
T ss_pred ccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 66 455566666666665543310 1123334445556678899999999
Q ss_pred HHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHH
Q 009975 350 AIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTI 429 (521)
Q Consensus 350 ~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a 429 (521)
+.++.+..++..+|++.-.+.+++.+..+|+|.+|.+|.+-++.+..++-..|.....+.++|.|.+.+.|+...|-..|
T Consensus 597 ~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~a 676 (1431)
T KOG1240|consen 597 ALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSA 676 (1431)
T ss_pred HHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHH
Confidence 99999999999999998889999999999999999999999988887776667665678899999999999999999999
Q ss_pred HHHHHHhhcc-cChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHH
Q 009975 430 LRAISLLAPV-MGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV 484 (521)
Q Consensus 430 ~~~l~~l~~~-~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~ 484 (521)
+.++..+++. +=.+...-.++..+..+|..|+..||.+++..+..+...++....
T Consensus 677 L~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~adv 732 (1431)
T KOG1240|consen 677 LGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADV 732 (1431)
T ss_pred HHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhh
Confidence 9999999872 222334566777888889999999999999999999888766543
No 36
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=4.9e-14 Score=131.57 Aligned_cols=341 Identities=16% Similarity=0.139 Sum_probs=253.4
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHhCC----CccccchHHHHHHhcC-CChHHHHHHHHHhHHHHHhhhCHH---
Q 009975 177 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPE--- 248 (521)
Q Consensus 177 ~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~----~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~--- 248 (521)
.+.+.....+.++..+..+...+..+...-.. ......++|.+++++. +.++.++..|+.+|..++......
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 45555555555666677777776666543222 1123578999999996 777999999999999998854332
Q ss_pred HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh---HHHHHhHHHHHHHhhcCCCh-HHHHHHHHHHHHhhhhhc
Q 009975 249 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIG 324 (521)
Q Consensus 249 ~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~ 324 (521)
......+|.+..++.+++..|++.++++++.++-.-.. -.....+++.++.++..+.. ...+.+.+++..++..-.
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 22334789999999999999999999999999843321 11223456777777776655 678889999999987653
Q ss_pred h--h-hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh---hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 009975 325 I--D-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 398 (521)
Q Consensus 325 ~--~-~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 398 (521)
+ . .....++|.+..++.+.+..|...++.+++.+.....+. .....++|.+..+|..++..|+..|+.++|.++
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence 2 1 233788999999999999999999999999998775543 233557899999999999999999999999976
Q ss_pred HHhCHH---HHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhhcccC---hHHHhhcHHHHHHhhcCCCCchHHHHHHHH
Q 009975 399 EEFGPE---WAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMG---SEITCSRLLPVVINASKDRVPNIKFNVAKV 471 (521)
Q Consensus 399 ~~~~~~---~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~il~~l~~~l~d~~~~VR~~a~~~ 471 (521)
...+.. .+....+|.+..++. ++...+|..|+++++.+...-. ...+...++|.++.+++......|..|+++
T Consensus 308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa 387 (514)
T KOG0166|consen 308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA 387 (514)
T ss_pred eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence 433221 234567889998877 6677799999999999987211 123456899999999999999999999999
Q ss_pred HHHHHhhhchHHH----HhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 009975 472 LQSLIPIVDQSMV----EKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 517 (521)
Q Consensus 472 l~~~~~~~~~~~~----~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~ 517 (521)
++.+.....++.. ..-+++.+-.++.-+|.++-..+..+++.+.+.
T Consensus 388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 9998876554432 244666777777777888878888888877654
No 37
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=4.7e-10 Score=111.72 Aligned_cols=423 Identities=19% Similarity=0.171 Sum_probs=265.1
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhc-CCChhHHHHHHHHHHHHhhh-cChhh
Q 009975 94 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKL-LEPQD 171 (521)
Q Consensus 94 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~-~~~~~ 171 (521)
..+.++..+.+.++|.+..||..|++.++.+....+.+ ..++.+.....+.+ -+++..-..|+-+++.++.. +-...
T Consensus 338 ivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 338 IVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 45677888888899999999999999999999998843 33444444444333 33567788999999999865 32334
Q ss_pred hhhhhHHHHHHhcC--------CCChHHHHHHHHHHHHHHHHhCCCcccc---chHH-HHHHhcCCChHHHHHHHHHhHH
Q 009975 172 CVAHILPVIVNFSQ--------DKSWRVRYMVANQLYELCEAVGPEPTRM---DLVP-AYVRLLRDNEAEVRIAAAGKVT 239 (521)
Q Consensus 172 ~~~~l~~~l~~~~~--------d~~~~vR~~~~~~l~~i~~~~~~~~~~~---~l~~-~l~~~l~d~~~~vr~~a~~~l~ 239 (521)
...+++|++.+.+. .....||.+++-.+-.+++...+....+ .+.+ .+...+-|++-++|.+|..++.
T Consensus 417 ~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlq 496 (1133)
T KOG1943|consen 417 LLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQ 496 (1133)
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHH
Confidence 56788999887664 2345799999999999988776554332 1222 2334567999999999998886
Q ss_pred HHHhhhCH------------------------------HHHHHhhhHHHHHhccC----CcHHHHHHHHHHHHccccccC
Q 009975 240 KFCRILNP------------------------------ELAIQHILPCVKELSSD----SSQHVRSALASVIMGMAPLLG 285 (521)
Q Consensus 240 ~l~~~~~~------------------------------~~~~~~~~~~l~~~~~d----~~~~vr~~~~~~l~~i~~~~~ 285 (521)
+.....+. +.+....-|.+..+... =+..+|..++.++.++...-+
T Consensus 497 E~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~p 576 (1133)
T KOG1943|consen 497 ENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEP 576 (1133)
T ss_pred HHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhH
Confidence 54332111 01111223333333333 234689999999999775554
Q ss_pred hHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhh---c-------hhhH--hhhHHHHHHHHhcCC--ChHHHHHH
Q 009975 286 KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI---G-------IDLL--SQSLLPAIVELAEDR--HWRVRLAI 351 (521)
Q Consensus 286 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~---~-------~~~~--~~~~~~~l~~~~~~~--~~~vr~~~ 351 (521)
+.. ....+|.++...-..+...|.++..+.+.+...+ + ...+ ...++|.+....-.+ ....|.+.
T Consensus 577 k~~-a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~ 655 (1133)
T KOG1943|consen 577 KYL-ADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQAT 655 (1133)
T ss_pred Hhh-cccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHH
Confidence 433 4456777777777778888888887777765432 1 0000 011233332211111 13445555
Q ss_pred HHHhHHHHhhh---ChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh--CHHHHHhhhHHHHHhhhc-CcchHH
Q 009975 352 IEYIPLLASQL---GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF--GPEWAMQHITPQVLEMIN-NPHYLY 425 (521)
Q Consensus 352 ~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~-~~~~~~ 425 (521)
+..+..+...- -.+.+.+...-++.+.+.+++ .+|.+|..+++.++..+ +.+.....++......+. +.+.+.
T Consensus 656 ~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~ 734 (1133)
T KOG1943|consen 656 LKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERI 734 (1133)
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHH
Confidence 54444443221 123444555566667777777 89999999999998765 222222335444444444 447888
Q ss_pred HHHHHHHHHHhhcccChHHHhhcHHHHHHhhc-CCCCchHHHHHHHHHHHHHhhhc-------hHHHHhhHHHHHHHhcC
Q 009975 426 RMTILRAISLLAPVMGSEITCSRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVD-------QSMVEKTIRPCLVELTE 497 (521)
Q Consensus 426 r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l-~d~~~~VR~~a~~~l~~~~~~~~-------~~~~~~~~~~~l~~l~~ 497 (521)
|.....+++.+-..+-.-...+.+...++... .|..+.-|...+.++..++...+ .+.+.+.++.++.+...
T Consensus 735 r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYtt 814 (1133)
T KOG1943|consen 735 RRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTT 814 (1133)
T ss_pred HHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhccc
Confidence 88888777776532211222334444444433 33367789999999999888766 13455778888888888
Q ss_pred CCCccH----HHHHHHHHHHHHHhhc
Q 009975 498 DPDVDV----RFFATQAIQSIDHVMM 519 (521)
Q Consensus 498 D~~~~v----r~~a~~al~~l~~~~~ 519 (521)
|...|| |..|.+++.++...+.
T Consensus 815 d~rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 815 DSRGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred ccCccHHHHHHHHHHHHHHhhhhhhc
Confidence 877774 6777777777766554
No 38
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=8.5e-13 Score=115.26 Aligned_cols=382 Identities=17% Similarity=0.172 Sum_probs=235.7
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhh---HHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhh-
Q 009975 96 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL---KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD- 171 (521)
Q Consensus 96 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~- 171 (521)
.+....++.++++.++.++.++..++|+++-..+.... ...+-+++.+++.|. -.+|+.++.++..++.+-....
T Consensus 84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~d~nk~k 162 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATFDSNKVK 162 (550)
T ss_pred hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhccccchhh
Confidence 44555666777888999999999999999877665332 233445666666654 4568888999999888722211
Q ss_pred --hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH
Q 009975 172 --CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 247 (521)
Q Consensus 172 --~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 247 (521)
....+.|+ .++.+.++..+|..+..++..+...... ......-+|+++.+++..+..||..+..+++.++-.-..
T Consensus 163 iA~sGaL~pl-trLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~ 241 (550)
T KOG4224|consen 163 IARSGALEPL-TRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRA 241 (550)
T ss_pred hhhccchhhh-HhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHH
Confidence 11124444 4488888889999998888877654432 233356678999999988899999998888887653211
Q ss_pred H----HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhh
Q 009975 248 E----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 323 (521)
Q Consensus 248 ~----~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 323 (521)
. ..-++++|.+.++..|.+++++..+.-+++.++..-..
T Consensus 242 Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y------------------------------------- 284 (550)
T KOG4224|consen 242 RKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY------------------------------------- 284 (550)
T ss_pred HHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh-------------------------------------
Confidence 1 11123555666666666666666555555555421110
Q ss_pred chhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhh--hHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHH
Q 009975 324 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEE 400 (521)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~ 400 (521)
..+.....-+|.+.++++++.-..-.+-+.++..++-+-+.+. ....++..+..++.- ++.+++-.|...+-.++..
T Consensus 285 q~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAas 364 (550)
T KOG4224|consen 285 QREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS 364 (550)
T ss_pred hhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh
Confidence 0111112335555555555443333333334433333322221 112233334444443 4555788888888777653
Q ss_pred hCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhh--cccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHH
Q 009975 401 FGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLA--PVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 475 (521)
Q Consensus 401 ~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~--~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~ 475 (521)
... .++....+|.+.+++.|..-.+|...-.++..++ +..........++|.++.+..+.+.+||-+++.+|..+
T Consensus 365 se~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nl 444 (550)
T KOG4224|consen 365 SEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINL 444 (550)
T ss_pred hhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhh
Confidence 322 2334567889999888887666665555555544 33333333456889999999999999999999999998
Q ss_pred HhhhchH-----HH---HhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975 476 IPIVDQS-----MV---EKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 476 ~~~~~~~-----~~---~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~ 516 (521)
+.....- .+ .+-+...|.++....+.-+|..+.|++..+.+
T Consensus 445 ss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle 493 (550)
T KOG4224|consen 445 SSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLE 493 (550)
T ss_pred hhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 7654320 00 14455666777777788888899998887754
No 39
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.57 E-value=5.2e-11 Score=116.74 Aligned_cols=376 Identities=17% Similarity=0.178 Sum_probs=256.9
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCC---CccccchHH
Q 009975 141 FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVP 217 (521)
Q Consensus 141 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~---~~~~~~l~~ 217 (521)
+...+++.+...-..++.+|..+.+........+.+.+.+...+.++++.||..++..+++++..-.. -.....+++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 44555555555557888899999888777767788999999999999999999999998887653221 123468999
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHhhhCHH-H-HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChH---HHHHh
Q 009975 218 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-L-AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQ 292 (521)
Q Consensus 218 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~-~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~---~~~~~ 292 (521)
.+..++.|++.+|...|+.+|..++..-..- . +.+...+.+..++..++..+|..+.+.+..++..-... .....
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sg 202 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSG 202 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence 9999999999999999999999998753221 1 12334777888887778888888888888886544331 12235
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhhhhh-chhh-HhhhHHHHHHHHhcCC--Ch---HHH-HHHHHHhHHHHhhhCh
Q 009975 293 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDL-LSQSLLPAIVELAEDR--HW---RVR-LAIIEYIPLLASQLGV 364 (521)
Q Consensus 293 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~~-~~~~~~~~l~~~~~~~--~~---~vr-~~~~~~l~~l~~~~~~ 364 (521)
+++.+...++++|.-++.++++.+..++..- |.+. ....+++.+.+.+.+. ++ .+. ...++.++.++..-+.
T Consensus 203 ll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~ 282 (503)
T PF10508_consen 203 LLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ 282 (503)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH
Confidence 8899999999999999999999999998732 2221 2245677777665332 22 111 2233555555554222
Q ss_pred hhh--HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh-CHHHH-------HhhhHHHHHhhhcCcchHHHHHHHHHHH
Q 009975 365 GFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF-GPEWA-------MQHITPQVLEMINNPHYLYRMTILRAIS 434 (521)
Q Consensus 365 ~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~~-------~~~l~~~l~~~l~~~~~~~r~~a~~~l~ 434 (521)
... .+.++..+...+...+...+..|+.++|.++... |.... .+.++..+.....+....+|.+++.+++
T Consensus 283 ~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~ 362 (503)
T PF10508_consen 283 EVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALA 362 (503)
T ss_pred HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 211 2456666677788899999999999999997544 22222 1234444555556667789999999999
Q ss_pred HhhcccCh-----------HHHh---hcHHH-HHHhhcCCCCchHHHHHHHHHHHHHhhh-chHHHH--hhHHHHHHHhc
Q 009975 435 LLAPVMGS-----------EITC---SRLLP-VVINASKDRVPNIKFNVAKVLQSLIPIV-DQSMVE--KTIRPCLVELT 496 (521)
Q Consensus 435 ~l~~~~~~-----------~~~~---~~il~-~l~~~l~d~~~~VR~~a~~~l~~~~~~~-~~~~~~--~~~~~~l~~l~ 496 (521)
.+...... .+|. +.-.. .+...++.|-+++|.++...+..++.+- |...+. +.++..+..-.
T Consensus 363 ~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~ 442 (503)
T PF10508_consen 363 SILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRS 442 (503)
T ss_pred HHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCC
Confidence 99653322 1111 11222 7888899999999999999999998653 111111 34455555555
Q ss_pred CCCCccHHHHHHHHHHHHHH
Q 009975 497 EDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 497 ~D~~~~vr~~a~~al~~l~~ 516 (521)
.+++++.+.+=...++.|.+
T Consensus 443 ~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 443 TETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 66777777777777776664
No 40
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=3.6e-11 Score=115.29 Aligned_cols=455 Identities=17% Similarity=0.157 Sum_probs=294.5
Q ss_pred HhhhhcCchhHHHHHHH-HHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHHH
Q 009975 25 LETLCTVEETCVRDKAV-ESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYT 103 (521)
Q Consensus 25 l~~l~~~~~~~vR~~a~-~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~ 103 (521)
|.+++++........|+ +.++.+++.-+ .+.+-|.+.+.+..++.++|.....-+...++.-++- --.=+..++
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G~d----vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdL-ALLSIntfQ 114 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKGKD----VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDL-ALLSINTFQ 114 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcCCc----HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCc-eeeeHHHHH
Confidence 45555544444444455 44555555443 2455555555555556666654443333444443332 111256888
Q ss_pred HhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHh
Q 009975 104 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNF 183 (521)
Q Consensus 104 ~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 183 (521)
+.++|+++.+|-.|...|..+-- ..+.+.++-.+.+...|..+.||..|+.++..+...-+. ...++...+..+
T Consensus 115 k~L~DpN~LiRasALRvlSsIRv----p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e--~k~qL~e~I~~L 188 (968)
T KOG1060|consen 115 KALKDPNQLIRASALRVLSSIRV----PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE--QKDQLEEVIKKL 188 (968)
T ss_pred hhhcCCcHHHHHHHHHHHHhcch----hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh--hHHHHHHHHHHH
Confidence 99999999999999988877532 345677777888899999999999999999988765332 345899999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhCCCccccchHHH---HHHhcCCChHHHHHHHHHhHHHHHhhh--CH-----------
Q 009975 184 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA---YVRLLRDNEAEVRIAAAGKVTKFCRIL--NP----------- 247 (521)
Q Consensus 184 ~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~---l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~----------- 247 (521)
+.|.++.|--+++.++..++..- .+-+-+. +-+++.|-+..=+...++.|...+.+. .+
T Consensus 189 LaD~splVvgsAv~AF~evCPer-----ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~ 263 (968)
T KOG1060|consen 189 LADRSPLVVGSAVMAFEEVCPER-----LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNG 263 (968)
T ss_pred hcCCCCcchhHHHHHHHHhchhH-----HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCc
Confidence 99999999999999988776421 1122222 334555666555666777777666542 11
Q ss_pred ------------------HHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHH
Q 009975 248 ------------------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVR 309 (521)
Q Consensus 248 ------------------~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr 309 (521)
+.-...++...+.++...++.|-.++++.+..+++.- -...+...++.++... .+++
T Consensus 264 ~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~----~~~~i~kaLvrLLrs~-~~vq 338 (968)
T KOG1060|consen 264 RSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN----QVTKIAKALVRLLRSN-REVQ 338 (968)
T ss_pred ccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH----HHHHHHHHHHHHHhcC-Ccch
Confidence 0111224455566677888889889988888887533 2345566667766644 5677
Q ss_pred HHHHHHHHHhhhhhc--------------------------------hhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHH
Q 009975 310 LNIISKLDQVNQVIG--------------------------------IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 357 (521)
Q Consensus 310 ~~a~~~l~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~ 357 (521)
...+.++..+...-. .+.-...+++.|..++.+.+.++-..++++++.
T Consensus 339 yvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGr 418 (968)
T KOG1060|consen 339 YVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGR 418 (968)
T ss_pred hhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 666666666543210 011124667777778888777888888888888
Q ss_pred HHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCc-chHHHHHHHHHHHHh
Q 009975 358 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP-HYLYRMTILRAISLL 436 (521)
Q Consensus 358 l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~~a~~~l~~l 436 (521)
.+...+. ..+..+.-++.+++..+.-|-..+...+..+.+.-... ...++..|...+..- -+.-|.+.+|.+|..
T Consensus 419 CA~~~~s--v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~--h~~ii~~La~lldti~vp~ARA~IiWLige~ 494 (968)
T KOG1060|consen 419 CASRIGS--VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE--HLEILFQLARLLDTILVPAARAGIIWLIGEY 494 (968)
T ss_pred HHHhhCc--hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHH--HHHHHHHHHHHhhhhhhhhhhceeeeeehhh
Confidence 8877664 24556677778888888888888888888887654322 223555666665332 356788888888887
Q ss_pred hcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHh-cCCCCccHHHHHH
Q 009975 437 APVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL-TEDPDVDVRFFAT 508 (521)
Q Consensus 437 ~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l-~~D~~~~vr~~a~ 508 (521)
+.... .+.+.++..+.+-+.|+.+.||...++.-..+...-.. .+ +.+.-.+..+ --|...++|..+.
T Consensus 495 ~e~vp--ri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~-~~-kll~~Yv~~L~~yD~sYDiRDRaR 563 (968)
T KOG1060|consen 495 CEIVP--RIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNID-QT-KLLVQYVFELARYDLSYDIRDRAR 563 (968)
T ss_pred hhhcc--hhchHHHHHHHHhhccccchhhHHHHHhhhhheEechh-hH-HHHHHHHHHHhccCCCcchhHHHH
Confidence 76422 24567777888889999999999998888776543221 12 2222222333 3588888887653
No 41
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.54 E-value=2.3e-10 Score=112.26 Aligned_cols=391 Identities=15% Similarity=0.167 Sum_probs=246.7
Q ss_pred HHHHHhhcCCCCcchhhhhhhhhhhcCCCChH-HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc---hhhHHHH
Q 009975 62 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDI 137 (521)
Q Consensus 62 p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l 137 (521)
+.+....++.+.+.-..++..+..+.....+. ....+.+.+...+.++++.||..++..++.++..... -.....+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l 120 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNEL 120 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccH
Confidence 33444444443333345566666666555444 5788889999999999999999999999988754332 1244678
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh--hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCC---Cccc
Q 009975 138 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTR 212 (521)
Q Consensus 138 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~---~~~~ 212 (521)
++.+..++.+++..|...|+.++..+++.-..- .....+.+.+..+....+..+|..+.+.+..++..-.. ....
T Consensus 121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~ 200 (503)
T PF10508_consen 121 LPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVN 200 (503)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 999999999999999999999999999763221 11233477778888777888999999988888753221 1123
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHH--HhhhHHHHHhc----cCC-cHHH-HHHHHHHHHcccccc
Q 009975 213 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI--QHILPCVKELS----SDS-SQHV-RSALASVIMGMAPLL 284 (521)
Q Consensus 213 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~~~~l~~~~----~d~-~~~v-r~~~~~~l~~i~~~~ 284 (521)
..+++.+.+.++++|.-+|..+++.+..++..-....+. ..+++.+..++ .|+ ...+ --..+..++.++..-
T Consensus 201 sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~ 280 (503)
T PF10508_consen 201 SGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVS 280 (503)
T ss_pred ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcC
Confidence 568999999999999999999999999998843222221 22455555554 334 1111 123335555555542
Q ss_pred ChHH--HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhh-chhhH-------hhhHHHHHHHHhcCCChHHHHHHHHH
Q 009975 285 GKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDLL-------SQSLLPAIVELAEDRHWRVRLAIIEY 354 (521)
Q Consensus 285 ~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~~~-------~~~~~~~l~~~~~~~~~~vr~~~~~~ 354 (521)
+... ....++..+..++.+.++..+..|..+++.++... |...+ ...++..+..........+|..++.+
T Consensus 281 ~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~a 360 (503)
T PF10508_consen 281 PQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHA 360 (503)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 2222 12455666677788899999999999999987643 22222 12233334444455566778888887
Q ss_pred hHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHH
Q 009975 355 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAIS 434 (521)
Q Consensus 355 l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~ 434 (521)
+..+........ .+.+. .....+...++...... .+..+++.|-+.+|.++...+.
T Consensus 361 l~~il~~~~~~~-~~~i~-------------------~~~~~w~~~~~~~~~~~----~l~~~~~qPF~elr~a~~~~l~ 416 (503)
T PF10508_consen 361 LASILTSGTDRQ-DNDIL-------------------SITESWYESLSGSPLSN----LLMSLLKQPFPELRCAAYRLLQ 416 (503)
T ss_pred HHHHHhcCCCCc-hHHHH-------------------HHHHHHHHHhcCCchHH----HHHHHhcCCchHHHHHHHHHHH
Confidence 777764332211 11111 22333444444322211 5666777777888888888888
Q ss_pred Hhhcc-cChHHH--hhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 009975 435 LLAPV-MGSEIT--CSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476 (521)
Q Consensus 435 ~l~~~-~~~~~~--~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~ 476 (521)
.++.+ .|...+ .+.++.+++.--.+++...+..=..++..+.
T Consensus 417 ~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 417 ALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred HHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 88763 222222 2456667766666666666665555555555
No 42
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=3.5e-10 Score=108.71 Aligned_cols=384 Identities=16% Similarity=0.146 Sum_probs=233.4
Q ss_pred HhhcCCCCcchhhhh-hhhhhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHh
Q 009975 66 RLAAGEWFTARVSAC-GLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL 144 (521)
Q Consensus 66 ~~~~~~~~~~r~~~~-~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l 144 (521)
++.+++....+..|+ .+++.++.+ .+ ...++|...+....++.+||+-+--.|-..++.-+.... -=+..+++-
T Consensus 42 ~lLdSnkd~~KleAmKRIia~iA~G-~d--vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL--LSIntfQk~ 116 (968)
T KOG1060|consen 42 QLLDSNKDSLKLEAMKRIIALIAKG-KD--VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL--LSINTFQKA 116 (968)
T ss_pred HHHhccccHHHHHHHHHHHHHHhcC-Cc--HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee--eeHHHHHhh
Confidence 444555545555565 444555543 33 678999988888889999999988888777765432211 114567788
Q ss_pred hcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC
Q 009975 145 TQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR 224 (521)
Q Consensus 145 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~ 224 (521)
+.|+|+-+|..|++++..+--. ...+-++-.+.++..|+++.||+.++.++.++-+ ++++.. +.+..++..++.
T Consensus 117 L~DpN~LiRasALRvlSsIRvp----~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k-~qL~e~I~~LLa 190 (968)
T KOG1060|consen 117 LKDPNQLIRASALRVLSSIRVP----MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQK-DQLEEVIKKLLA 190 (968)
T ss_pred hcCCcHHHHHHHHHHHHhcchh----hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhH-HHHHHHHHHHhc
Confidence 8999999999999998765322 1233444556678899999999999999987754 444443 489999999999
Q ss_pred CChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHcccccc--------------------
Q 009975 225 DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL-------------------- 284 (521)
Q Consensus 225 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~-------------------- 284 (521)
|.++-|--+|+.++..++-.- -.....-.--+.+++.|-+.+=+..++..+.+.++.-
T Consensus 191 D~splVvgsAv~AF~evCPer--ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~ 268 (968)
T KOG1060|consen 191 DRSPLVVGSAVMAFEEVCPER--LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNL 268 (968)
T ss_pred CCCCcchhHHHHHHHHhchhH--HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccc
Confidence 999999999998887765421 0111111222334444433333333333333332210
Q ss_pred --------Ch---HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHH
Q 009975 285 --------GK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 353 (521)
Q Consensus 285 --------~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~ 353 (521)
++ +.....++...-.++.+.++.|-.++++.+-.++..... ..+...+..++.. +..++...+.
T Consensus 269 ~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~----~~i~kaLvrLLrs-~~~vqyvvL~ 343 (968)
T KOG1060|consen 269 KDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV----TKIAKALVRLLRS-NREVQYVVLQ 343 (968)
T ss_pred cccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH----HHHHHHHHHHHhc-CCcchhhhHH
Confidence 00 111234556666778899999999999988888765422 3445555555433 4567777777
Q ss_pred HhHHHHhhhChhhhHHHHHHHHHHHc-CCC-cHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHH
Q 009975 354 YIPLLASQLGVGFFDDKLGALCMQWL-QDK-VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILR 431 (521)
Q Consensus 354 ~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~ 431 (521)
.+..++..-+ .. +.|.+.++. ... ...++.-=++.|..++..-. ...+++.+..+.++++.++-.+++.
T Consensus 344 nIa~~s~~~~-~l----F~P~lKsFfv~ssDp~~vk~lKleiLs~La~esn----i~~ILrE~q~YI~s~d~~faa~aV~ 414 (968)
T KOG1060|consen 344 NIATISIKRP-TL----FEPHLKSFFVRSSDPTQVKILKLEILSNLANESN----ISEILRELQTYIKSSDRSFAAAAVK 414 (968)
T ss_pred HHHHHHhcch-hh----hhhhhhceEeecCCHHHHHHHHHHHHHHHhhhcc----HHHHHHHHHHHHhcCchhHHHHHHH
Confidence 7777765422 22 223332221 111 12233333444444443222 3456666666666666667777777
Q ss_pred HHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 009975 432 AISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 478 (521)
Q Consensus 432 ~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~ 478 (521)
++|.++...+. +.+..+.-++.+++..+..|-..++..+..+.+.
T Consensus 415 AiGrCA~~~~s--v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~ 459 (968)
T KOG1060|consen 415 AIGRCASRIGS--VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK 459 (968)
T ss_pred HHHHHHHhhCc--hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 77777764442 3456666677777666666666666666666554
No 43
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.2e-09 Score=105.92 Aligned_cols=461 Identities=15% Similarity=0.103 Sum_probs=279.3
Q ss_pred hhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCC--CChH
Q 009975 16 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS--APDI 93 (521)
Q Consensus 16 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~--~~~~ 93 (521)
++++-++..|...++|.|..||-.|++.++.+...++.+-..+.+-..+.-+..-+....=..+|..++.++.. +.+.
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 45666777777888899999999999999999999996654333333332121122222233566666555432 3455
Q ss_pred HHHHHHHHHHHhcC--------CCChHHHHHHHHhHHHHHHhhCchhhHH----HHHHHHHHhhcCCChhHHHHHHHHHH
Q 009975 94 LKTELRSIYTQLCQ--------DDMPMVRRSAASNLGKFAATVEPAHLKT----DIMSIFEDLTQDDQDSVRLLAVEGCA 161 (521)
Q Consensus 94 ~~~~l~~~l~~l~~--------~~~~~vr~~a~~~l~~l~~~~~~~~~~~----~l~~~l~~l~~d~~~~vr~~a~~~l~ 161 (521)
....+.|++...+. .....||.+|+..+=.+.+...+....+ ....++...+-|.+-++|.+|..++.
T Consensus 417 ~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlq 496 (1133)
T KOG1943|consen 417 LLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQ 496 (1133)
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHH
Confidence 57778887776542 2356899999999999998877654444 23334455667888999999988887
Q ss_pred HHhhhcCh--------------------h----------hhhhhhHHHHHH----hcCCCChHHHHHHHHHHHHHHHHhC
Q 009975 162 ALGKLLEP--------------------Q----------DCVAHILPVIVN----FSQDKSWRVRYMVANQLYELCEAVG 207 (521)
Q Consensus 162 ~l~~~~~~--------------------~----------~~~~~l~~~l~~----~~~d~~~~vR~~~~~~l~~i~~~~~ 207 (521)
+.....+. + ....+.-|++.. -..+.+..+|..++.++.++....+
T Consensus 497 E~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~p 576 (1133)
T KOG1943|consen 497 ENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEP 576 (1133)
T ss_pred HHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhH
Confidence 76554221 0 011112233332 3556788999999999999776544
Q ss_pred CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH----------HHH--HHhhhHHHHHhccCCc--HHHHHHH
Q 009975 208 PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP----------ELA--IQHILPCVKELSSDSS--QHVRSAL 273 (521)
Q Consensus 208 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----------~~~--~~~~~~~l~~~~~d~~--~~vr~~~ 273 (521)
+.. ....+|.+.......+...|..+..+.+.+....-. ..+ ...++|.+...--++. ...|.+.
T Consensus 577 k~~-a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~ 655 (1133)
T KOG1943|consen 577 KYL-ADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQAT 655 (1133)
T ss_pred Hhh-cccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHH
Confidence 333 345666666666666778888877777766554311 000 1112222222111121 3456666
Q ss_pred HHHHHccccccC---hHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch--hhHhhhHHHHH-HHHhcCCChHH
Q 009975 274 ASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAI-VELAEDRHWRV 347 (521)
Q Consensus 274 ~~~l~~i~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~~~~~l-~~~~~~~~~~v 347 (521)
...+..+...-. .+...+.+.-.+.+.+.+++ .+|..|..+++.++...-. +.....++... ..+.+..+.++
T Consensus 656 ~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~ 734 (1133)
T KOG1943|consen 656 LKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERI 734 (1133)
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHH
Confidence 666666543322 23334445556666666666 8999999999998765421 11112233333 33334446778
Q ss_pred HHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHhCH-------HHHHhhhHHHHHhhhc
Q 009975 348 RLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGP-------EWAMQHITPQVLEMIN 419 (521)
Q Consensus 348 r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~-------~~~~~~l~~~l~~~l~ 419 (521)
|....-+++.+....=.-...+.+...++.... |..+.-|+..+.++..++...+. +.+.+.++..+.++..
T Consensus 735 r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYtt 814 (1133)
T KOG1943|consen 735 RRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTT 814 (1133)
T ss_pred HHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhccc
Confidence 877666665554332222334455555554433 44778899999999998887762 2234556666666655
Q ss_pred Ccc----hHHHHHHHHHHHHhhcccC-hHHHh----hcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 009975 420 NPH----YLYRMTILRAISLLAPVMG-SEITC----SRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 478 (521)
Q Consensus 420 ~~~----~~~r~~a~~~l~~l~~~~~-~~~~~----~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~ 478 (521)
|.+ ..+|++|+.++..+...+. ++.+. ..++-.+++--.++....|.-|+.++..+..+
T Consensus 815 d~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 815 DSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred ccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence 543 6799999999999887655 23222 33344444445566666788888888877654
No 44
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.47 E-value=7.8e-10 Score=102.70 Aligned_cols=472 Identities=12% Similarity=0.060 Sum_probs=264.4
Q ss_pred hhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHH
Q 009975 21 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRS 100 (521)
Q Consensus 21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~ 100 (521)
++-.+.++..+.|+..|+..-.++.++...-. ++.-..-..+...-..-...+|.-|++.+-. -+++.+.-.+-.
T Consensus 66 lff~i~KlFQhkd~~Lrq~VY~aIkelS~~te--dvlm~tssiMkD~~~g~~~~~kp~AiRsL~~---Vid~~tv~~~er 140 (898)
T COG5240 66 LFFAILKLFQHKDLYLRQCVYSAIKELSKLTE--DVLMGTSSIMKDLNGGVPDDVKPMAIRSLFS---VIDGETVYDFER 140 (898)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHhhcch--hhhHHHHHHHHhhccCCccccccHHHHHHHH---hcCcchhhhHHH
Confidence 55556677788899999987777776665321 1110111111222222233455555543322 234444555556
Q ss_pred HHHHhcCCCChHHHHHHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcC------------CChhHHHHHHHHHHHHhhh
Q 009975 101 IYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQD------------DQDSVRLLAVEGCAALGKL 166 (521)
Q Consensus 101 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d------------~~~~vr~~a~~~l~~l~~~ 166 (521)
++.+..-++.+.+|.+|.-.-..+...... ....++.......+.+. .++-...-|+..|..+-..
T Consensus 141 ~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~ 220 (898)
T COG5240 141 YLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRT 220 (898)
T ss_pred HhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcc
Confidence 667777777788887776444333321100 00111111111112111 1111222233222222111
Q ss_pred cChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh
Q 009975 167 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 245 (521)
Q Consensus 167 ~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 245 (521)
+... ...++..+..+.+-.-..+.+..+..+...+..+ .....+.|++-..++|.-..|...+++++..++..-
T Consensus 221 --dkma---~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n 295 (898)
T COG5240 221 --DKMA---QLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN 295 (898)
T ss_pred --cHHH---HHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc
Confidence 0001 1122222222221111111111222222222221 123457777888888877788888888888876654
Q ss_pred -CHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc
Q 009975 246 -NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 324 (521)
Q Consensus 246 -~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 324 (521)
++ ++....+..+..++..+....|-+|...+.+++...+... ...-+-+..++.|.+..+-..|+.+|-+- |
T Consensus 296 v~~-~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv--~vcN~evEsLIsd~Nr~IstyAITtLLKT----G 368 (898)
T COG5240 296 VGS-QFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV--SVCNKEVESLISDENRTISTYAITTLLKT----G 368 (898)
T ss_pred cCH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee--eecChhHHHHhhcccccchHHHHHHHHHc----C
Confidence 44 4456777888888888888889999999999886665432 22345566777887766655555444332 3
Q ss_pred hhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHHHHhCH
Q 009975 325 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ-WLQDKVYSIRDAAANNLKRLAEEFGP 403 (521)
Q Consensus 325 ~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~ 403 (521)
.+.-...++..+..+..|-+...+.-+++++..++-.++.+. ..++..+.. +++....+-+..+..++..+.+....
T Consensus 369 t~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~ 446 (898)
T COG5240 369 TEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--LSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPD 446 (898)
T ss_pred chhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--HHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCch
Confidence 233335566666666677666667777777777777766542 223333333 33456777888888888887765432
Q ss_pred HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHH
Q 009975 404 EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM 483 (521)
Q Consensus 404 ~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~ 483 (521)
..+..+..|..+..|..+. +.+++.++-+.+..+...-...++.+++.-+-=++..||.+|..+|..++-......
T Consensus 447 --skEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~ 522 (898)
T COG5240 447 --SKERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV 522 (898)
T ss_pred --HHHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc
Confidence 3566777788888776543 455666666665433221122233333333333567899999999999887766666
Q ss_pred HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 009975 484 VEKTIRPCLVELTEDPDVDVRFFATQAIQSID 515 (521)
Q Consensus 484 ~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~ 515 (521)
..+.+...|.++++|.|.+||..|.-++..+.
T Consensus 523 ~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 523 SPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 66788889999999999999999998887664
No 45
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=2.1e-11 Score=106.69 Aligned_cols=371 Identities=16% Similarity=0.149 Sum_probs=249.5
Q ss_pred hhcCCCCcchhhhhhhhhhhcCCCChH----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchh---hHHHHHH
Q 009975 67 LAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH---LKTDIMS 139 (521)
Q Consensus 67 ~~~~~~~~~r~~~~~~~~~~~~~~~~~----~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~ 139 (521)
+.++....+..+++..++.++-+.... ...-+-+++.++..| ..+||..+..++..++..-.... ....+.|
T Consensus 93 llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~p 171 (550)
T KOG4224|consen 93 LLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVKIARSGALEP 171 (550)
T ss_pred HHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhhhhhccchhh
Confidence 334444455566665555444332211 122244566676655 46889899999988886522211 1223444
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhhhcChh--hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCC----Ccccc
Q 009975 140 IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRM 213 (521)
Q Consensus 140 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~----~~~~~ 213 (521)
+ .++.++++..+|..+..+|.++...-... -...--+|.+..++...++.+|+.++.+++.|+-.... ....+
T Consensus 172 l-trLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep 250 (550)
T KOG4224|consen 172 L-TRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEP 250 (550)
T ss_pred h-HhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence 4 55888999999999999998876542211 11123579999999999999999999999988742110 11236
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC--HHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHH--
Q 009975 214 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT-- 289 (521)
Q Consensus 214 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~-- 289 (521)
.++|.++.++.|+++.|+..|-.+|..++.... .+....--+|.+.++++++.-..-.+-+.++..++-.-+.+..
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~ 330 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIA 330 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccccee
Confidence 799999999999999999999999998876431 1222233578899999888776666667777777654443321
Q ss_pred HHhHHHHHHHhhc-CCChHHHHHHHHHHHHhhhhhchh---hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhh--hC
Q 009975 290 IEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ--LG 363 (521)
Q Consensus 290 ~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~--~~ 363 (521)
..-++..+..++. .++++++..|...+-.++...... .+....+|.+.+++-|..-.+|..+-.++..++-. ..
T Consensus 331 dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k 410 (550)
T KOG4224|consen 331 DAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDK 410 (550)
T ss_pred cccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccH
Confidence 1224555566654 455679999999988876543322 22356789999999999888888877777666533 22
Q ss_pred hhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHH-H-------HhhhHHHHHhhhcCcchHHHHHHHHHHHH
Q 009975 364 VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW-A-------MQHITPQVLEMINNPHYLYRMTILRAISL 435 (521)
Q Consensus 364 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~-------~~~l~~~l~~~l~~~~~~~r~~a~~~l~~ 435 (521)
.......++|++..+..+.+.+||..++.++..+........ + .+.+-..+..++.+....+|..+.+++..
T Consensus 411 ~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~q 490 (550)
T KOG4224|consen 411 EALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQ 490 (550)
T ss_pred HHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 223345588999999999999999999999999886543210 0 13345566677778888888888888888
Q ss_pred hhcc
Q 009975 436 LAPV 439 (521)
Q Consensus 436 l~~~ 439 (521)
+.+.
T Consensus 491 Lle~ 494 (550)
T KOG4224|consen 491 LLED 494 (550)
T ss_pred HHHh
Confidence 8763
No 46
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.42 E-value=6.5e-10 Score=103.22 Aligned_cols=422 Identities=14% Similarity=0.124 Sum_probs=255.2
Q ss_pred chhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHH----HHHHHhcC
Q 009975 32 EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELR----SIYTQLCQ 107 (521)
Q Consensus 32 ~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~----~~l~~l~~ 107 (521)
.+..+|-.|+++|-.+.+.-..-.+. .++.+..-+....+|.+++..-.++++..... .+... .....+.+
T Consensus 114 ~~~~~kp~AiRsL~~Vid~~tv~~~e----r~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~-~~rw~ne~qeav~~l~q 188 (898)
T COG5240 114 VPDDVKPMAIRSLFSVIDGETVYDFE----RYLNQAFVSTSMARRSAALVVAYHLLPNNFNQ-TKRWLNETQEAVLDLKQ 188 (898)
T ss_pred CccccccHHHHHHHHhcCcchhhhHH----HHhhhhccccchhhhhhHHHHhhhhccccHHH-HHHHHHHHHHHHhhHhh
Confidence 34477888888877766642211111 11122222455566666655545555543322 22222 22222222
Q ss_pred C------------CChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh-hhhhh
Q 009975 108 D------------DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVA 174 (521)
Q Consensus 108 ~------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~ 174 (521)
. .++.-+..|...|.++-+. + .-..+.++..+..+..-.-..+.+.....+.+.+.. .....
T Consensus 189 ~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~---d--kma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~ 263 (898)
T COG5240 189 FPNQHGNEGYEPNGNPISQYHALGLLYQSKRT---D--KMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALL 263 (898)
T ss_pred CcCccCCcccCCCCChHHHHHHHHHHHHHhcc---c--HHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHH
Confidence 1 1233344443333332211 1 112233333333333222233333333444333322 23556
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHHHHHHHh-CCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHh
Q 009975 175 HILPVIVNFSQDKSWRVRYMVANQLYELCEAV-GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH 253 (521)
Q Consensus 175 ~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~-~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 253 (521)
++.|++...++|+-..|...+++.+..++..- +++. ....+..+..+++.+....|.+|+..|..++...+... ..
T Consensus 264 q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~-~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv--~v 340 (898)
T COG5240 264 QLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQF-VDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV--SV 340 (898)
T ss_pred HHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee--ee
Confidence 78899999999999999999999988877543 3333 35567788889999999999999999999998765432 12
Q ss_pred hhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHH
Q 009975 254 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 333 (521)
Q Consensus 254 ~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 333 (521)
.-+.+..++.|.|..+-..|+..+-.. |.+...+.++..+..++.|-++..+.-++.++..++-.+..++ ..++
T Consensus 341 cN~evEsLIsd~Nr~IstyAITtLLKT----Gt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~s~l 414 (898)
T COG5240 341 CNKEVESLISDENRTISTYAITTLLKT----GTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--LSYL 414 (898)
T ss_pred cChhHHHHhhcccccchHHHHHHHHHc----CchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--HHHH
Confidence 345567778888877666665555443 4455566777777888887777777777777777776666554 4566
Q ss_pred HHHHH-HhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHH
Q 009975 334 PAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 412 (521)
Q Consensus 334 ~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 412 (521)
..+.. +.+......+.++++++..+.+..+.. .+..+..+-.++.|.... +-+...|+-+.+.-....-....+-
T Consensus 415 ~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s--kEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvr 490 (898)
T COG5240 415 DFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS--KERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVR 490 (898)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhhCchH--HHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHH
Confidence 66666 345677889999999998888876543 344555566666665432 1122223322211100001122333
Q ss_pred HHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 009975 413 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476 (521)
Q Consensus 413 ~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~ 476 (521)
.+.+.+-=.|..+|.+|+.+++.++-........+.+...+-++++|.+..||..|..++..+-
T Consensus 491 hIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 491 HIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 3433333457889999999999999877777677888889999999999999999999988774
No 47
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.2e-09 Score=105.69 Aligned_cols=467 Identities=14% Similarity=0.146 Sum_probs=279.5
Q ss_pred hhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHH
Q 009975 21 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRS 100 (521)
Q Consensus 21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~ 100 (521)
..+.+..-..+.-+.-|..|++....-+. +| .++...+-.++..+..++ ......+.++...|....++..-...+
T Consensus 14 ei~elks~l~s~~~~kr~~a~kkvIa~Mt-~G-~DvSslF~dvvk~~~T~d--lelKKlvyLYl~nYa~~~P~~a~~avn 89 (734)
T KOG1061|consen 14 EIPELKSQLNSQSKEKRKDAVKKVIAYMT-VG-KDVSSLFPDVVKCMQTRD--LELKKLVYLYLMNYAKGKPDLAILAVN 89 (734)
T ss_pred hchHHHHHhhhhhhhhHHHHHHHHHhcCc-cC-cchHhhhHHHHhhcccCC--chHHHHHHHHHHHhhccCchHHHhhhh
Confidence 34444433344444566666654322111 12 333333333444333333 223345566666666666665566677
Q ss_pred HHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHH
Q 009975 101 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 180 (521)
Q Consensus 101 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l 180 (521)
.+..=+.|++|.+|..|...++.+- -+.+...+..-+....+|+++.+|..+.-+...+...-++-....-+++.+
T Consensus 90 t~~kD~~d~np~iR~lAlrtm~~l~----v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L 165 (734)
T KOG1061|consen 90 TFLKDCEDPNPLIRALALRTMGCLR----VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDAL 165 (734)
T ss_pred hhhccCCCCCHHHHHHHhhceeeEe----ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHH
Confidence 8888889999999999888776643 245677777888888999999999999887777654432223344588888
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHHhCCCccc---cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH-HHHhhhH
Q 009975 181 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTR---MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL-AIQHILP 256 (521)
Q Consensus 181 ~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~ 256 (521)
..+..|.++.|-..+..++..|...-...... ..++..+++.+..-+..-+.. .+..+....+++. -...++.
T Consensus 166 ~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~---IL~~l~~y~p~d~~ea~~i~~ 242 (734)
T KOG1061|consen 166 KDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIF---ILDCLAEYVPKDSREAEDICE 242 (734)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHH---HHHHHHhcCCCCchhHHHHHH
Confidence 99999999999999999998887654432211 233344444444333333333 3444444443321 1123444
Q ss_pred HHHHhccCCcHHHHHHHHHHHHccccccCh--HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch---------
Q 009975 257 CVKELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--------- 325 (521)
Q Consensus 257 ~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--------- 325 (521)
.+...+...+..|-..+.+.+-.....+.. +...+.+-|.+..++.... ++.--++..+..+......
T Consensus 243 r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~F 321 (734)
T KOG1061|consen 243 RLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVF 321 (734)
T ss_pred HhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHee
Confidence 444445555655555555555555544443 2334455555555554443 6666665555544332110
Q ss_pred -----------------------hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCC
Q 009975 326 -----------------------DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK 382 (521)
Q Consensus 326 -----------------------~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 382 (521)
+.....++..+.++..+.+...-..++++++.++-..... ...+..++.+++-.
T Consensus 322 f~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLell~~~ 398 (734)
T KOG1061|consen 322 FCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLELLETK 398 (734)
T ss_pred eeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHHHhhc
Confidence 0111346666667777777776677778888877665443 45677777777765
Q ss_pred cHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcC-cchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCC
Q 009975 383 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRV 461 (521)
Q Consensus 383 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~ 461 (521)
...|-+.+...+..+...+... .+.+++.+...+.+ .++..|.+.+|.+|.-++.+... .+++..+++...|+.
T Consensus 399 ~~yvvqE~~vvi~dilRkyP~~--~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a---~elL~~f~en~~dE~ 473 (734)
T KOG1061|consen 399 VDYVVQEAIVVIRDILRKYPNK--YESVVAILCENLDSLQEPEAKAALIWILGEYAERIENA---LELLESFLENFKDET 473 (734)
T ss_pred ccceeeehhHHHHhhhhcCCCc--hhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcH---HHHHHHHHhhcccch
Confidence 5556566666666666665433 24566666655444 56789999999999998877654 567888888899999
Q ss_pred chHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCC-CCccHHHHHH
Q 009975 462 PNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTED-PDVDVRFFAT 508 (521)
Q Consensus 462 ~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D-~~~~vr~~a~ 508 (521)
..|+...+.+.-.+.-..+. ..++.+...|.....| .++++|..+.
T Consensus 474 ~~Vql~LLta~ik~Fl~~p~-~tq~~l~~vL~~~~~d~~~~dlrDr~l 520 (734)
T KOG1061|consen 474 AEVQLELLTAAIKLFLKKPT-ETQELLQGVLPLATADTDNPDLRDRGL 520 (734)
T ss_pred HHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHhhhhccccChhhhhhHH
Confidence 88888777666555443332 2233344444444455 3568887664
No 48
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=2e-07 Score=94.63 Aligned_cols=345 Identities=12% Similarity=0.140 Sum_probs=225.7
Q ss_pred hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCC--C---------ccccchHHHHHHhcCCC------hHHHHHHH
Q 009975 172 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--E---------PTRMDLVPAYVRLLRDN------EAEVRIAA 234 (521)
Q Consensus 172 ~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~--~---------~~~~~l~~~l~~~l~d~------~~~vr~~a 234 (521)
....+.|++...+.-.. ..|..+|.+|..++..-.+ + .....++|.+.+..... ....|...
T Consensus 515 sF~~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~ 593 (1176)
T KOG1248|consen 515 SFTDLAPILGAALLKRP-ELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTV 593 (1176)
T ss_pred HHHHHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHH
Confidence 34557777776665443 8999999999888765310 0 01235677777765432 23344444
Q ss_pred HHhHH-HHHhhhCHHHHHHhhhHHHHHhccCCcHHH----HHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHH
Q 009975 235 AGKVT-KFCRILNPELAIQHILPCVKELSSDSSQHV----RSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVR 309 (521)
Q Consensus 235 ~~~l~-~l~~~~~~~~~~~~~~~~l~~~~~d~~~~v----r~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr 309 (521)
+.... ...+..+. +....+...+.....+.+..+ +...+..+..+++....... ..+..+.-..-+..+..++
T Consensus 594 L~~i~~~~~~~t~~-dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~v-s~l~~v~~~~e~~~~~~vQ 671 (1176)
T KOG1248|consen 594 LEIIRVDYFTVTPT-DVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQV-SKLFTVDPEFENSSSTKVQ 671 (1176)
T ss_pred HHHHHHHHhhcccH-HHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhH-HHHHHhhHHhhccccHHHH
Confidence 44443 22232232 333445555566666654433 34445555555555544432 2233333334445578999
Q ss_pred HHHHHHHHHhhhhhchhh----HhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhh--hHHHHHHHHHHHcCCCc
Q 009975 310 LNIISKLDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKV 383 (521)
Q Consensus 310 ~~a~~~l~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~ 383 (521)
+.+...|..++.....+. ....+...+.+-+++.....|...+.++..+.+.++.+. +....+|-++-.+++.+
T Consensus 672 kK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n 751 (1176)
T KOG1248|consen 672 KKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVN 751 (1176)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccccc
Confidence 999999999887622222 224555556666677777889999999999999998543 23344444444449999
Q ss_pred HHHHHHHHHHHHHHH--HHh---CHHH---HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcc---cChHHHhhcHHHH
Q 009975 384 YSIRDAAANNLKRLA--EEF---GPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---MGSEITCSRLLPV 452 (521)
Q Consensus 384 ~~vr~~a~~~l~~l~--~~~---~~~~---~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~---~~~~~~~~~il~~ 452 (521)
..-|+.++.+|..+. ... |.+. ..+..++.+...+-....+++...+-+++.+... +..+.+.+.++..
T Consensus 752 ~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~ 831 (1176)
T KOG1248|consen 752 VKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISM 831 (1176)
T ss_pred HHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 999999999998887 222 4332 3455566665554444455555546777777653 3345567888888
Q ss_pred HHhhcCCCCchHHHHHHHHHHHHHhhhchHHH---HhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975 453 VINASKDRVPNIKFNVAKVLQSLIPIVDQSMV---EKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 519 (521)
Q Consensus 453 l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~---~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~ 519 (521)
+..++....+.|+.+|+..+..++..++.... .+.++|.+..+++|....+|..+..-++.+.+.+|
T Consensus 832 V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg 901 (1176)
T KOG1248|consen 832 VCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFG 901 (1176)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 89999999999999999999999998877644 46789999999999999999999999998887765
No 49
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.37 E-value=3.6e-10 Score=106.45 Aligned_cols=278 Identities=24% Similarity=0.264 Sum_probs=188.5
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhh
Q 009975 175 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 254 (521)
Q Consensus 175 ~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 254 (521)
...+.+.+...++++.+|..++..++.+. ....+|.+.+++.|.++.||..|..+|+.+.. +..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~--------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a 106 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG--------SEEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA 106 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc--------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence 34556666777778888888887766543 24577888888888888888888887766543 122
Q ss_pred hHHHHHhcc-CCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCC------------hHHHHHHHHHHHHhhh
Q 009975 255 LPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF------------PDVRLNIISKLDQVNQ 321 (521)
Q Consensus 255 ~~~l~~~~~-d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~------------~~vr~~a~~~l~~~~~ 321 (521)
.+.+...++ |+++.||..++.+++.+.. +..+..+...++|.. ..+|..+...++.+..
T Consensus 107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~--------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~ 178 (335)
T COG1413 107 VPPLVELLENDENEGVRAAAARALGKLGD--------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD 178 (335)
T ss_pred HHHHHHHHHcCCcHhHHHHHHHHHHhcCc--------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence 344444444 7888888888888877752 222444445555543 2578888888877665
Q ss_pred hhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Q 009975 322 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 401 (521)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 401 (521)
+..++.+.+.+.+....+|..++..++.+.... ..+.+.+...+.|+++.||..++..++.+.
T Consensus 179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~--- 241 (335)
T COG1413 179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIG--- 241 (335)
T ss_pred --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccC---
Confidence 566777888888888899999988887776543 356677888889999999999888877653
Q ss_pred CHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch
Q 009975 402 GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 481 (521)
Q Consensus 402 ~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~ 481 (521)
.....+.+...+.+.++.++..+....+..- .......+...+.|....+|..+...+..+...
T Consensus 242 -----~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~--- 305 (335)
T COG1413 242 -----DEEAVDALAKALEDEDVILALLAAAALGALD--------LAEAALPLLLLLIDEANAVRLEAALALGQIGQE--- 305 (335)
T ss_pred -----cchhHHHHHHHHhccchHHHHHHHHHhcccC--------chhhHHHHHHHhhcchhhHHHHHHHHHHhhccc---
Confidence 2345566777777888877776666655111 123345566667788888999888888877653
Q ss_pred HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 009975 482 SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 514 (521)
Q Consensus 482 ~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l 514 (521)
...........+.+..+|..+......+
T Consensus 306 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 333 (335)
T COG1413 306 -----KAVAALLLALEDGDADVRKAALILLEGI 333 (335)
T ss_pred -----chHHHHHHHhcCCchhhHHHHHHHHHhh
Confidence 2233334455677777777777665543
No 50
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.33 E-value=7.7e-11 Score=102.31 Aligned_cols=304 Identities=15% Similarity=0.090 Sum_probs=210.2
Q ss_pred cchHHHHHHhcC-CChHHHHHHHHHhHHHHHhhhCHHH---HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccC-h-
Q 009975 213 MDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPEL---AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-K- 286 (521)
Q Consensus 213 ~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~-~- 286 (521)
..++|-|++++. .+....+..|..+|..++.-..... +-...+|.+.+++.+.+..||..+++++|+++--.. .
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R 192 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR 192 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence 468888999884 4455667788888888877543221 112358999999999999999999999999873211 1
Q ss_pred HH-HHHhHHHHHHHhhcCCCh--HHHHHHHHHHHHhhhhhch--h-hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHh
Q 009975 287 DA-TIEQLLPIFLSLLKDEFP--DVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 360 (521)
Q Consensus 287 ~~-~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~ 360 (521)
+. ...-.+..++.++.++-. .+-+.+...|+.++..-.+ + ......+|.+.+++...++.+-.-++.+++.+..
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD 272 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD 272 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence 11 112345566666665544 5566788888888764332 2 1235779999999988899998888888888876
Q ss_pred hhChh---hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHH---HHHhhhHHHHHhhhcCcchHHHHHHHHHHH
Q 009975 361 QLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAIS 434 (521)
Q Consensus 361 ~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~ 434 (521)
.-... .....+.+-+.++|..++..+..-|+..+|.++...... .+.-..++.+..++.++..++|..+|++++
T Consensus 273 g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiS 352 (526)
T COG5064 273 GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTIS 352 (526)
T ss_pred CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeec
Confidence 53321 122234556788899999999999999999887533211 122346777888899999999999999999
Q ss_pred HhhcccCh---HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh-chHHHH-----hhHHHHHHHhcCCCCccHHH
Q 009975 435 LLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV-DQSMVE-----KTIRPCLVELTEDPDVDVRF 505 (521)
Q Consensus 435 ~l~~~~~~---~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~-~~~~~~-----~~~~~~l~~l~~D~~~~vr~ 505 (521)
.+...-.. ..+...++|.++.+++.....+|..||+++....... +.+... +-++..|..++.-.+..|-.
T Consensus 353 NITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiie 432 (526)
T COG5064 353 NITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIE 432 (526)
T ss_pred ccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchh
Confidence 98752211 2245678999999999999999999999998876542 111111 22334455566666666777
Q ss_pred HHHHHHHHHHH
Q 009975 506 FATQAIQSIDH 516 (521)
Q Consensus 506 ~a~~al~~l~~ 516 (521)
.+..++..+.+
T Consensus 433 v~LD~~eniLk 443 (526)
T COG5064 433 VALDAIENILK 443 (526)
T ss_pred hhHHHHHHHHh
Confidence 88888877654
No 51
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=3.5e-08 Score=95.75 Aligned_cols=399 Identities=13% Similarity=0.113 Sum_probs=208.4
Q ss_pred chhhhhhhhhhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHH
Q 009975 75 ARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRL 154 (521)
Q Consensus 75 ~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~ 154 (521)
+...|+..++. -.+++....+.|.+.+++++.++.||+.|+.+...+....+ ...+.+.+-..+++.+.+..|-.
T Consensus 123 vVglAL~alg~---i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P--~l~e~f~~~~~~lL~ek~hGVL~ 197 (866)
T KOG1062|consen 123 VVGLALCALGN---ICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP--DLVEHFVIAFRKLLCEKHHGVLI 197 (866)
T ss_pred ehHHHHHHhhc---cCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc--hHHHHhhHHHHHHHhhcCCceee
Confidence 33334444444 44677788999999999999999999999999999887665 34566677778888888888888
Q ss_pred HHHHHHHHHhhhcChh-----hhhhhhHHHHHHhcCC-----------CChHHHHHHHHHHHHHHHHhCCCccccchHHH
Q 009975 155 LAVEGCAALGKLLEPQ-----DCVAHILPVIVNFSQD-----------KSWRVRYMVANQLYELCEAVGPEPTRMDLVPA 218 (521)
Q Consensus 155 ~a~~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~d-----------~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~ 218 (521)
.++..+..+++.-++. +....++.++.++... ++|-.+..+.+.+.- +|
T Consensus 198 ~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLri----LG----------- 262 (866)
T KOG1062|consen 198 AGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRI----LG----------- 262 (866)
T ss_pred eHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHH----hc-----------
Confidence 8888888887764321 1222233333332221 223333333332221 11
Q ss_pred HHHhcCCChHHHHHHHHHhHHHHHhhhC------H----------------HHHHHhhhHHHHHhccCCcHHHHHHHHHH
Q 009975 219 YVRLLRDNEAEVRIAAAGKVTKFCRILN------P----------------ELAIQHILPCVKELSSDSSQHVRSALASV 276 (521)
Q Consensus 219 l~~~l~d~~~~vr~~a~~~l~~l~~~~~------~----------------~~~~~~~~~~l~~~~~d~~~~vr~~~~~~ 276 (521)
.+++..-......|+.++...+ . ......-+..+-+++.+++-.+|+.++..
T Consensus 263 ------q~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~ 336 (866)
T KOG1062|consen 263 ------QNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNM 336 (866)
T ss_pred ------CCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhh
Confidence 1122222222233333333221 1 11111112222222222223334444433
Q ss_pred HHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhH
Q 009975 277 IMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356 (521)
Q Consensus 277 l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~ 356 (521)
+....+.-+. ..+.=-..+..+++|++..+|+.|++-...+...-.. ..++..+.+++...+...|..++.-+.
T Consensus 337 L~r~V~~d~~--avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv----~~mv~eLl~fL~~~d~~~k~~~as~I~ 410 (866)
T KOG1062|consen 337 LLRVVQQDPT--AVQRHRSTILECLKDPDVSIKRRALELSYALVNESNV----RVMVKELLEFLESSDEDFKADIASKIA 410 (866)
T ss_pred HHhhhcCCcH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccH----HHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333322111 1222345677888899888988888888777664332 344555555556667778888888888
Q ss_pred HHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh-CHH--HHHhhhHHHHHh--hhcCcchHHHHHHHH
Q 009975 357 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF-GPE--WAMQHITPQVLE--MINNPHYLYRMTILR 431 (521)
Q Consensus 357 ~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~--~~~~~l~~~l~~--~l~~~~~~~r~~a~~ 431 (521)
.+++.+.++ ..+.+..+++.++..-.-|+.-+...+-.++..- +.. .....+...+.. ...-++...-+.+.|
T Consensus 411 ~laEkfaP~--k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W 488 (866)
T KOG1062|consen 411 ELAEKFAPD--KRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASW 488 (866)
T ss_pred HHHHhcCCc--chhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Confidence 888777765 2344444445444443444444444444433222 211 011112112211 111234455678888
Q ss_pred HHHHhhcccCh--------HHHhhcHHHHHHhhcCC--CCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCc
Q 009975 432 AISLLAPVMGS--------EITCSRLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDV 501 (521)
Q Consensus 432 ~l~~l~~~~~~--------~~~~~~il~~l~~~l~d--~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~ 501 (521)
++|.-.+.+-. ..-.+.++..+.+.+.. ....+|..++.++-++...+... .+.+...+..+...-+.
T Consensus 489 ~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~--~~ri~~lI~~~~~s~~~ 566 (866)
T KOG1062|consen 489 CIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS--SERIKQLISSYKSSLDT 566 (866)
T ss_pred HhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHhcccccH
Confidence 88887742211 11123344444443221 13667888888887777665432 34444555555555555
Q ss_pred cHHHHHHH
Q 009975 502 DVRFFATQ 509 (521)
Q Consensus 502 ~vr~~a~~ 509 (521)
+.+..|.+
T Consensus 567 elQQRa~E 574 (866)
T KOG1062|consen 567 ELQQRAVE 574 (866)
T ss_pred HHHHHHHH
Confidence 66555543
No 52
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.31 E-value=6.5e-10 Score=104.69 Aligned_cols=249 Identities=23% Similarity=0.269 Sum_probs=189.0
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhH
Q 009975 214 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL 293 (521)
Q Consensus 214 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l 293 (521)
...+.+.+.+.|+++.+|..+...++.+.. ...+|.+...+.|.++.+|..++.+++.+. .+..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------~~~a 106 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELG--------DPEA 106 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--------ChhH
Confidence 467888899999999999999988776544 356888999999999999999999888876 3456
Q ss_pred HHHHHHhhc-CCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCC------------hHHHHHHHHHhHHHHh
Q 009975 294 LPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH------------WRVRLAIIEYIPLLAS 360 (521)
Q Consensus 294 ~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~vr~~~~~~l~~l~~ 360 (521)
+|.+...+. |++..||..+..+++.+... ..++.+.+..++.. |.+|..++..++.+..
T Consensus 107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~ 178 (335)
T COG1413 107 VPPLVELLENDENEGVRAAAARALGKLGDE--------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD 178 (335)
T ss_pred HHHHHHHHHcCCcHhHHHHHHHHHHhcCch--------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence 777777777 79999999999999998763 22444444444433 4677777776655542
Q ss_pred hhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhccc
Q 009975 361 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM 440 (521)
Q Consensus 361 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~ 440 (521)
+...+.+...+.|++..||.++..+++.+.... ..+.+.+...+.++++.+|..++..++.+..
T Consensus 179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~-- 242 (335)
T COG1413 179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD-- 242 (335)
T ss_pred --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence 345677788889999999999999998876432 3466778888999999999999999988764
Q ss_pred ChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975 441 GSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 441 ~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~ 516 (521)
..-.+.+...+.+..+.++..+...++..- .....+.+.....|.+..+|..+..+++.+.+
T Consensus 243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 243 ------EEAVDALAKALEDEDVILALLAAAALGALD--------LAEAALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred ------chhHHHHHHHHhccchHHHHHHHHHhcccC--------chhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 345567788888888888888877776211 12233444556788899999999988887654
No 53
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.31 E-value=1.2e-09 Score=95.09 Aligned_cols=303 Identities=13% Similarity=0.116 Sum_probs=206.1
Q ss_pred hHHHHHHhc-CCCChHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--H
Q 009975 176 ILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--L 249 (521)
Q Consensus 176 l~~~l~~~~-~d~~~~vR~~~~~~l~~i~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~ 249 (521)
++|-+.+++ +......+..++.++..++..-... ......+|.|++++.+++..||..++.+|+.++...+.. .
T Consensus 115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~ 194 (526)
T COG5064 115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDY 194 (526)
T ss_pred ccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHH
Confidence 666677766 4455667778888888887643322 234678999999999999999999999999987643221 1
Q ss_pred HH-HhhhHHHHHhccCC--cHHHHHHHHHHHHccccccCh---HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhh
Q 009975 250 AI-QHILPCVKELSSDS--SQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 323 (521)
Q Consensus 250 ~~-~~~~~~l~~~~~d~--~~~vr~~~~~~l~~i~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 323 (521)
+. .-.+..+..++... +-..-+.+-+.+++++....+ .......+|++.+++...+++|--.|+.+++.+...-
T Consensus 195 vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~ 274 (526)
T COG5064 195 VLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGP 274 (526)
T ss_pred HHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCc
Confidence 11 11333344444332 234555677888888865533 2345678999999999999999999999999886532
Q ss_pred ch---hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh---hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 009975 324 GI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 397 (521)
Q Consensus 324 ~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 397 (521)
.. -.+...+.+.+.+++.+++..+..-++..++.+...-... ...-..++.+..+|+.+...+|..|+..+..+
T Consensus 275 ~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNI 354 (526)
T COG5064 275 NEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNI 354 (526)
T ss_pred HHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccc
Confidence 11 1122345667888888998888888888888776543322 12234577778889999999999999999887
Q ss_pred HHHhCHH---HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhccc-ChHHH-----hhcHHHHHHhhcCCCCchHHHHH
Q 009975 398 AEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM-GSEIT-----CSRLLPVVINASKDRVPNIKFNV 468 (521)
Q Consensus 398 ~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~-~~~~~-----~~~il~~l~~~l~d~~~~VR~~a 468 (521)
....... .+...++|.|..++...++.+|..||+++.....+. +.... .+-++..+..+|.-....|-+.+
T Consensus 355 TAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~ 434 (526)
T COG5064 355 TAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVA 434 (526)
T ss_pred ccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhh
Confidence 5432211 133568999999999999999999999999887632 22222 23344445555544333455566
Q ss_pred HHHHHHHHhh
Q 009975 469 AKVLQSLIPI 478 (521)
Q Consensus 469 ~~~l~~~~~~ 478 (521)
+.++..+.+.
T Consensus 435 LD~~eniLk~ 444 (526)
T COG5064 435 LDAIENILKV 444 (526)
T ss_pred HHHHHHHHhh
Confidence 7777766543
No 54
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.31 E-value=1.4e-07 Score=97.73 Aligned_cols=491 Identities=16% Similarity=0.152 Sum_probs=286.1
Q ss_pred hHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHH
Q 009975 23 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY 102 (521)
Q Consensus 23 ~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l 102 (521)
..+...+..+...+|..|++++..+.+.-+.-.....+...+-.-..|....+|.++..++|...-..++ ...+....+
T Consensus 819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e-~~~qyY~~i 897 (1692)
T KOG1020|consen 819 KLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE-LIFQYYDQI 897 (1692)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH-HHHHHHHHH
Confidence 3334445677889999999999999987544344455555555556677889999999999987754444 466777777
Q ss_pred HHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh-----hhhhhh-
Q 009975 103 TQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-----DCVAHI- 176 (521)
Q Consensus 103 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~l- 176 (521)
.+-+.|+.-.||+.+++.+..++...+.=....+++.-+..-.+|++.++...+.+++..+.=.-.++ .....+
T Consensus 898 ~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~ 977 (1692)
T KOG1020|consen 898 IERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKIS 977 (1692)
T ss_pred HhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhH
Confidence 77789999999999999999999877653344555555666678888889999999998875321111 111111
Q ss_pred --HHHHH---HhcCCCChHHHHHHHHHH--HHHHHHhCCC--ccccchHHHHHHhc------------CCChHHHHH-HH
Q 009975 177 --LPVIV---NFSQDKSWRVRYMVANQL--YELCEAVGPE--PTRMDLVPAYVRLL------------RDNEAEVRI-AA 234 (521)
Q Consensus 177 --~~~l~---~~~~d~~~~vR~~~~~~l--~~i~~~~~~~--~~~~~l~~~l~~~l------------~d~~~~vr~-~a 234 (521)
..... .+..+..+..=.....-- ........+. ....+.+..+..++ .+++.++|. +.
T Consensus 978 ~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~ 1057 (1692)
T KOG1020|consen 978 LEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAY 1057 (1692)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHH
Confidence 11111 111122111100000000 0000000000 00122223322222 223345554 44
Q ss_pred HHhHHHHHhhhCHH---HHHHhhhHHHHHhccC-CcHHHHHHHHHHHHccccccC--hHHHHHhHHHHHHHhhcCCChHH
Q 009975 235 AGKVTKFCRILNPE---LAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLG--KDATIEQLLPIFLSLLKDEFPDV 308 (521)
Q Consensus 235 ~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~i~~~~~--~~~~~~~l~~~l~~~l~d~~~~v 308 (521)
+.+|..++...+.- .+...+.|++..-++. ...++-...+..+..+.+... .+.+...+=..+.+++-..+..+
T Consensus 1058 lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~ 1137 (1692)
T KOG1020|consen 1058 LSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMAT 1137 (1692)
T ss_pred HHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHH
Confidence 55555555543221 2334567777655332 334555566666665555442 24444555555666665666677
Q ss_pred HHHHHHHHHHhhhhh--chhhHhhhHHHHHHHHh-------cCC----ChHHHHHHHHHhHHHHhhhC--------hh--
Q 009975 309 RLNIISKLDQVNQVI--GIDLLSQSLLPAIVELA-------EDR----HWRVRLAIIEYIPLLASQLG--------VG-- 365 (521)
Q Consensus 309 r~~a~~~l~~~~~~~--~~~~~~~~~~~~l~~~~-------~~~----~~~vr~~~~~~l~~l~~~~~--------~~-- 365 (521)
...|+.+++.+.... |.... ...+..+...+ .+. +...-...+.+++.++.++. +.
T Consensus 1138 V~~~vsCl~sl~~k~~~~~~~v-~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~ 1216 (1692)
T KOG1020|consen 1138 VVEAVSCLGSLATKRTDGAKVV-KACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFL 1216 (1692)
T ss_pred HHHHHHHHHHHHhhhccchHHH-HHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccch
Confidence 777888888887753 22222 23333322221 122 21222334567777777542 11
Q ss_pred ----hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchH--HHHHHHHHHHHhhc-
Q 009975 366 ----FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYL--YRMTILRAISLLAP- 438 (521)
Q Consensus 366 ----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~--~r~~a~~~l~~l~~- 438 (521)
...++++..+.-+.++.+..+|..|+.++|.++-.-..-+....+...+.+.+.+.+.. .+..++..+.....
T Consensus 1217 ~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~e 1296 (1692)
T KOG1020|consen 1217 QEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLE 1296 (1692)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 33456677777778888899999999999999865443333444555555555543321 12333322222221
Q ss_pred -----------------------------ccChH----HHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHH
Q 009975 439 -----------------------------VMGSE----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE 485 (521)
Q Consensus 439 -----------------------------~~~~~----~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~ 485 (521)
..|.. -+.+.+++.++..+-|.+..+|..|++.+..+....=.. -
T Consensus 1297 ee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVh--P 1374 (1692)
T KOG1020|consen 1297 EEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVH--P 1374 (1692)
T ss_pred HHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCC--c
Confidence 11111 134678888888888999999999999999887642111 1
Q ss_pred hhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 009975 486 KTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 517 (521)
Q Consensus 486 ~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~ 517 (521)
....|.|..+.+|+....|..|-.-+..+.+.
T Consensus 1375 ~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~k 1406 (1692)
T KOG1020|consen 1375 VHCVPTLIALETDPSQAIRHVADELLKEIDEK 1406 (1692)
T ss_pred cchhhhheeecCChHHHHHHHHHHHHHHHHHh
Confidence 35678899999999999999999888877653
No 55
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=1.6e-09 Score=102.36 Aligned_cols=301 Identities=15% Similarity=0.135 Sum_probs=190.4
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccC
Q 009975 186 DKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSD 264 (521)
Q Consensus 186 d~~~~vR~~~~~~l~~i~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d 264 (521)
+.+..+|..+......++..-.+- .....+...+..+..|.+..||..|++++-.+.+.. .....+.....+++.|
T Consensus 169 ~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~---kL~~~~Y~~A~~~lsD 245 (823)
T KOG2259|consen 169 ISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF---KLSKACYSRAVKHLSD 245 (823)
T ss_pred cccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc---cccHHHHHHHHHHhcc
Confidence 344445555544443333221111 112456666788889999999999999998888732 1234456677888899
Q ss_pred CcHHHHHHHHHHHHccccccC--h------HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHH
Q 009975 265 SSQHVRSALASVIMGMAPLLG--K------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI 336 (521)
Q Consensus 265 ~~~~vr~~~~~~l~~i~~~~~--~------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l 336 (521)
.+..||.+|++.+...++..+ . ....+..+.-+...+.|-+..||-.|.+.++.+...-. +.+...+
T Consensus 246 ~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe-----e~i~QTL 320 (823)
T KOG2259|consen 246 DYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE-----EIIQQTL 320 (823)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH-----HHHHHHH
Confidence 999999999888877766551 1 12234566777888899999999999999998865321 1112222
Q ss_pred HH-Hh-cCCChHHHHHHHHHh---HHHH--hhhChhhhH-------HHH-----HHHHHHHcCCCcHHHHHHHHHHHHHH
Q 009975 337 VE-LA-EDRHWRVRLAIIEYI---PLLA--SQLGVGFFD-------DKL-----GALCMQWLQDKVYSIRDAAANNLKRL 397 (521)
Q Consensus 337 ~~-~~-~~~~~~vr~~~~~~l---~~l~--~~~~~~~~~-------~~l-----~~~l~~~l~d~~~~vr~~a~~~l~~l 397 (521)
.+ +. .+.-|+......+.+ +.+. +..+.+.-. ..+ ...+...++|...+||.+|...+..+
T Consensus 321 dKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~L 400 (823)
T KOG2259|consen 321 DKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSL 400 (823)
T ss_pred HHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHH
Confidence 11 11 111122111111111 1000 001111000 112 23567788999999999999999988
Q ss_pred HHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975 398 AEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 398 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~ 477 (521)
+.. ...+...-+..|.++++|....+|.-|+.++..++.++. +.+..++.+...+.|.+.+||.+.-..|+..-
T Consensus 401 a~s--sP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~~~- 474 (823)
T KOG2259|consen 401 ATS--SPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKNAR- 474 (823)
T ss_pred HcC--CCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 743 223456788899999999999999999999999998733 45778999999999999999998888876532
Q ss_pred hhchHHH---HhhHHHHHHHhcCCCC
Q 009975 478 IVDQSMV---EKTIRPCLVELTEDPD 500 (521)
Q Consensus 478 ~~~~~~~---~~~~~~~l~~l~~D~~ 500 (521)
..+.+.+ ...++..|.+.-+|.|
T Consensus 475 ~~d~~~i~m~v~~lL~~L~kyPqDrd 500 (823)
T KOG2259|consen 475 VSDLECIDMCVAHLLKNLGKYPQDRD 500 (823)
T ss_pred CCcHHHHHHHHHHHHHHhhhCCCCcH
Confidence 1122222 2444444444555544
No 56
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.28 E-value=4.3e-10 Score=99.47 Aligned_cols=187 Identities=18% Similarity=0.252 Sum_probs=122.4
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh----hhhHHH---HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC
Q 009975 330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----GFFDDK---LGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 402 (521)
Q Consensus 330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~----~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 402 (521)
+.+...|.+.-.+.+|..|..++..+..+...... +.+.+. +.+.+...+.|....|-..|+.+++.++..+|
T Consensus 6 ~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~ 85 (228)
T PF12348_consen 6 EEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG 85 (228)
T ss_dssp GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 34444554445677888888888888887766511 122222 23566677778788888888888888888887
Q ss_pred HHH--HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcH-HHHHHhhcCCCCchHHHHHHHHHHHHHhhh
Q 009975 403 PEW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRL-LPVVINASKDRVPNIKFNVAKVLQSLIPIV 479 (521)
Q Consensus 403 ~~~--~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~i-l~~l~~~l~d~~~~VR~~a~~~l~~~~~~~ 479 (521)
..+ +.+.++|.|.+.+.+++..+|..+..++..+....+ +...+ .+.+..+..+.++.+|..++..+..+....
T Consensus 86 ~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 86 SHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS---YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp GGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred HhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC---cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 653 457788888888888888888888888888888766 12334 777788888888999999988888888776
Q ss_pred c--hH-----HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975 480 D--QS-----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 519 (521)
Q Consensus 480 ~--~~-----~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~ 519 (521)
+ .. ...+.+.+.+.++++|++++||..|..++..+.+..+
T Consensus 163 ~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 163 GSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp ----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred cchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 6 11 1225688888888899999999999998888877765
No 57
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=99.28 E-value=1.2e-10 Score=111.33 Aligned_cols=253 Identities=18% Similarity=0.216 Sum_probs=206.6
Q ss_pred CCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCC
Q 009975 264 DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR 343 (521)
Q Consensus 264 d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 343 (521)
-++..-|......+....+.++++.....++|.+...+.-.+ --...+.-+-.+.+.+..+.+...++|.+.++++.+
T Consensus 265 lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~ 342 (690)
T KOG1243|consen 265 LKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSP 342 (690)
T ss_pred cCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcCc
Confidence 345556677777777778888888888889998887765443 111122223333333443446678999999999999
Q ss_pred ChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcch
Q 009975 344 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY 423 (521)
Q Consensus 344 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~ 423 (521)
+..+|...+..+..+...+.++.+.+.+.|.+...+.|.++.+|+.+++++..++..++......+++..+...-.|.+.
T Consensus 343 Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~ 422 (690)
T KOG1243|consen 343 DRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHG 422 (690)
T ss_pred chHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccC
Confidence 99999999999999999999999999999999999999999999999999999999998887777888888887778999
Q ss_pred HHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccH
Q 009975 424 LYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDV 503 (521)
Q Consensus 424 ~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~v 503 (521)
.+|....-+++.++.++....-...+.....+.++|+-..-|.++...+....+.+........++|.+.-+.-|++..|
T Consensus 423 ~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~v 502 (690)
T KOG1243|consen 423 GIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTV 502 (690)
T ss_pred cccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccch
Confidence 99999999999999887665533333344455799999999999999999999988888889999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 009975 504 RFFATQAIQSIDHVM 518 (521)
Q Consensus 504 r~~a~~al~~l~~~~ 518 (521)
|..|.+++.......
T Consensus 503 r~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 503 RDTAEKAIRQFLEKL 517 (690)
T ss_pred hhHHHHHHHHHHhhh
Confidence 999999998765544
No 58
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.27 E-value=1.8e-09 Score=101.50 Aligned_cols=241 Identities=13% Similarity=0.060 Sum_probs=109.3
Q ss_pred hhHHHHHHhc-CCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHh
Q 009975 175 HILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH 253 (521)
Q Consensus 175 ~l~~~l~~~~-~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 253 (521)
...+.+...+ .+++..++..++..+... .....+..+.+.+.|.++.||.++.++|+.+.. ..
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--------~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------~~ 117 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ--------EDALDLRSVLAVLQAGPEGLCAGIQAALGWLGG--------RQ 117 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc--------CChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------hH
Confidence 3444444444 345555555444333211 112335555555555555566666555554322 12
Q ss_pred hhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHH
Q 009975 254 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 333 (521)
Q Consensus 254 ~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 333 (521)
..+.+..+++++++.||..++.+++... ..-.+.+...++|+++.||..|+.+++.+.. ....
T Consensus 118 a~~~L~~~L~~~~p~vR~aal~al~~r~---------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~ 180 (410)
T TIGR02270 118 AEPWLEPLLAASEPPGRAIGLAALGAHR---------HDPGPALEAALTHEDALVRAAALRALGELPR--------RLSE 180 (410)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhc---------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccch
Confidence 2344444445555556655554444421 1123344445555556666666655555443 2334
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHH
Q 009975 334 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 413 (521)
Q Consensus 334 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 413 (521)
|.+.....|.++.||..++..+..+. .. .-.+.+.....++...++..+...++.. |. ...++.
T Consensus 181 ~~L~~al~d~~~~VR~aA~~al~~lG----~~----~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~ 244 (410)
T TIGR02270 181 STLRLYLRDSDPEVRFAALEAGLLAG----SR----LAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAW 244 (410)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcC----CH----hHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHH
Confidence 44445555555555555555543321 11 1122333323333333333332222211 11 134444
Q ss_pred HHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 009975 414 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476 (521)
Q Consensus 414 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~ 476 (521)
|..++++++ +|..++.++|.+.. +..++.++..++|+. +|..|..++..|.
T Consensus 245 L~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 245 LRELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred HHHHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence 555555443 55555555555432 334455555555443 5555555555544
No 59
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.8e-07 Score=90.96 Aligned_cols=250 Identities=10% Similarity=0.105 Sum_probs=152.6
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHH
Q 009975 215 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 294 (521)
Q Consensus 215 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~ 294 (521)
-+.++-+++...+.++|..|+..|..+...-+.. .+.=-..+.+.++|++..+|+-+.+....+...-. ...++
T Consensus 314 ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~a--vqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N----v~~mv 387 (866)
T KOG1062|consen 314 AINILGKFLLNRDNNIRYVALNMLLRVVQQDPTA--VQRHRSTILECLKDPDVSIKRRALELSYALVNESN----VRVMV 387 (866)
T ss_pred HHHHHHHHhcCCccceeeeehhhHHhhhcCCcHH--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc----HHHHH
Confidence 4455555666666677877777777765543222 23334566777899999999999988887764433 23455
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhh-hChhhhHHHHHH
Q 009975 295 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ-LGVGFFDDKLGA 373 (521)
Q Consensus 295 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~-~~~~~~~~~l~~ 373 (521)
.-++..+...+++.+..++..+..+++.+.++. ...++.+...+.....-|+..+...+-.+... ++... ......
T Consensus 388 ~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k--~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~-~y~~~r 464 (866)
T KOG1062|consen 388 KELLEFLESSDEDFKADIASKIAELAEKFAPDK--RWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELH-EYAVLR 464 (866)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcc--hhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchh-hHHHHH
Confidence 555566666688999999999999998888765 23455555555444444444444444333333 23321 111111
Q ss_pred HHHHHcC-----CCcHHHHHHHHHHHHHHHHHh--CH---H---HHHhhhHHHHHhhhcC--cchHHHHHHHHHHHHhhc
Q 009975 374 LCMQWLQ-----DKVYSIRDAAANNLKRLAEEF--GP---E---WAMQHITPQVLEMINN--PHYLYRMTILRAISLLAP 438 (521)
Q Consensus 374 ~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~--~~---~---~~~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~l~~ 438 (521)
+...... -.....-+.+..++|+....+ |. + .-...++..+.+.+.. .+..++..++.++.++..
T Consensus 465 Ly~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSs 544 (866)
T KOG1062|consen 465 LYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSS 544 (866)
T ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 1111111 133445677888998877433 10 0 1124456666655433 358899999999999987
Q ss_pred ccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHH
Q 009975 439 VMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 475 (521)
Q Consensus 439 ~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~ 475 (521)
.+... .+.+-..+......-+..+++.|.+.=..+
T Consensus 545 r~~s~--~~ri~~lI~~~~~s~~~elQQRa~E~~~l~ 579 (866)
T KOG1062|consen 545 RFHSS--SERIKQLISSYKSSLDTELQQRAVEYNALF 579 (866)
T ss_pred hcccc--HHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 66654 456666777777777888998887754444
No 60
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=1.5e-08 Score=96.02 Aligned_cols=238 Identities=22% Similarity=0.218 Sum_probs=156.1
Q ss_pred hHHHHHHHHHHHHhhhcCh-hhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHH
Q 009975 151 SVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAE 229 (521)
Q Consensus 151 ~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~ 229 (521)
.+|..+......++..-.+ ......+..-+..++.|.++.||..|++++-.+...++ ..........+.++|++..
T Consensus 173 ~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k---L~~~~Y~~A~~~lsD~~e~ 249 (823)
T KOG2259|consen 173 GNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFK---LSKACYSRAVKHLSDDYED 249 (823)
T ss_pred cchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccccc---ccHHHHHHHHHHhcchHHH
Confidence 4455555554444433221 11223344446667777777788887777665554111 1234556666777777778
Q ss_pred HHHHHHHhHHHHHhhhC-H-------HHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccC--------hHHH----
Q 009975 230 VRIAAAGKVTKFCRILN-P-------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--------KDAT---- 289 (521)
Q Consensus 230 vr~~a~~~l~~l~~~~~-~-------~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~--------~~~~---- 289 (521)
||.+|++.+...++..+ + .......+..+.....|-+|.||-.+++.+|.+-..-. ++..
T Consensus 250 VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lR 329 (823)
T KOG2259|consen 250 VRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLR 329 (823)
T ss_pred HHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhh
Confidence 88888777766666551 1 12344556666677777777777777777776532110 0000
Q ss_pred ------------------------------------HHhHH-----HHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhH
Q 009975 290 ------------------------------------IEQLL-----PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 328 (521)
Q Consensus 290 ------------------------------------~~~l~-----~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 328 (521)
.+.++ ..+...+.|+.-+||.+|+.+++.++..-. .+
T Consensus 330 Rkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP--~F 407 (823)
T KOG2259|consen 330 RKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP--GF 407 (823)
T ss_pred hhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC--Cc
Confidence 01122 245566778888999999999999875322 23
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 009975 329 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKR 396 (521)
Q Consensus 329 ~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 396 (521)
....+..+.++++|+...||..++.++..++.++. ..+..++.+...+.|.+.++|++.-+.|+.
T Consensus 408 A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 408 AVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 36778899999999999999999999999998843 346678899999999999999987776654
No 61
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.21 E-value=5e-09 Score=98.61 Aligned_cols=242 Identities=15% Similarity=0.062 Sum_probs=168.7
Q ss_pred HHHHHHHHHhh-cCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcccc
Q 009975 135 TDIMSIFEDLT-QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM 213 (521)
Q Consensus 135 ~~l~~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~ 213 (521)
+...+.+...+ .+++..++..++..+.. ......+..+...+.|.++.||..++++|+.+- .+
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~--------~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--------~~ 116 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLA--------QEDALDLRSVLAVLQAGPEGLCAGIQAALGWLG--------GR 116 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhc--------cCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------ch
Confidence 56667666666 56677777665544431 123334788888888999999999999988643 35
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhH
Q 009975 214 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL 293 (521)
Q Consensus 214 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l 293 (521)
...+.+..+++++++.||.+++.+++.... .-.+.+...++|.++.||..++.+++.+. ....
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~~---------~~~~~L~~~L~d~d~~Vra~A~raLG~l~--------~~~a 179 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAHRH---------DPGPALEAALTHEDALVRAAALRALGELP--------RRLS 179 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc---------ChHHHHHHHhcCCCHHHHHHHHHHHHhhc--------cccc
Confidence 677888889999999999888877766221 12345666677999999999999998876 2345
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHH
Q 009975 294 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 373 (521)
Q Consensus 294 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 373 (521)
.|.+...+.|.++.||..|+.++..+.. ....+.+..+..++.+..+..+...+... |. +..++
T Consensus 180 ~~~L~~al~d~~~~VR~aA~~al~~lG~--------~~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~ 243 (410)
T TIGR02270 180 ESTLRLYLRDSDPEVRFAALEAGLLAGS--------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQA 243 (410)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHH
Confidence 6667778999999999999999977644 23345555544555555544444333222 22 25677
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 009975 374 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLA 437 (521)
Q Consensus 374 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~ 437 (521)
.+..+++|++ +|..++.+++.+. ....++.+...+.++. +|..|-+++..+.
T Consensus 244 ~L~~ll~d~~--vr~~a~~AlG~lg--------~p~av~~L~~~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 244 WLRELLQAAA--TRREALRAVGLVG--------DVEAAPWCLEAMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred HHHHHhcChh--hHHHHHHHHHHcC--------CcchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence 7788888866 8999888888653 2346677777777665 7777888888776
No 62
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=6.1e-08 Score=93.79 Aligned_cols=288 Identities=13% Similarity=0.151 Sum_probs=184.7
Q ss_pred hhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHH
Q 009975 173 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ 252 (521)
Q Consensus 173 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 252 (521)
...+++.+..++.+++..|-..++.++..+....+.+.. ..+..+.-+++.+....|.+|...|..++...+... .
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v--~ 318 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV--T 318 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc--c
Confidence 346788888899999999999999988766554443332 267778888999999999999999999998776542 1
Q ss_pred hhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhH
Q 009975 253 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 332 (521)
Q Consensus 253 ~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 332 (521)
..-.-+..++.|.|..+-..+...+-.. |.+...+.++..+.....|-+.+.+.-+..++..++..+...+ ..+
T Consensus 319 ~cN~elE~lItd~NrsIat~AITtLLKT----G~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~--~~~ 392 (865)
T KOG1078|consen 319 VCNLDLESLITDSNRSIATLAITTLLKT----GTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKH--TVM 392 (865)
T ss_pred ccchhHHhhhcccccchhHHHHHHHHHh----cchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHH--HHH
Confidence 1234456677888876665555544443 3444455666666666655555555555555555555544433 456
Q ss_pred HHHHHHHh-cCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhH
Q 009975 333 LPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT 411 (521)
Q Consensus 333 ~~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 411 (521)
++.+.+++ ++.....+.+.++++..+++..+.. ....+..+..++.|.... .-+...++.+........-....+
T Consensus 393 m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds--Ke~~L~~LCefIEDce~~--~i~~rILhlLG~EgP~a~~Pskyi 468 (865)
T KOG1078|consen 393 MNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS--KERGLEHLCEFIEDCEFT--QIAVRILHLLGKEGPKAPNPSKYI 468 (865)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch--hhHHHHHHHHHHHhccch--HHHHHHHHHHhccCCCCCCcchhh
Confidence 67776654 4566788888888888887754433 122333444444553322 222222322222110000112223
Q ss_pred HHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 009975 412 PQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476 (521)
Q Consensus 412 ~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~ 476 (521)
-.+.+..-=.|..+|.+|+.++..++ .+.+...+.+...+.+++.|.+..||.+|...+..+-
T Consensus 469 r~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 469 RFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 33333333357889999999999998 4555567788888999999999999999999988876
No 63
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=9.7e-06 Score=81.22 Aligned_cols=418 Identities=13% Similarity=0.118 Sum_probs=243.0
Q ss_pred CchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhh-cCC-CCcchhhh-hhhhhhh---cC-C--------CChHHH
Q 009975 31 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA-AGE-WFTARVSA-CGLFHIA---YP-S--------APDILK 95 (521)
Q Consensus 31 ~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~-~~~-~~~~r~~~-~~~~~~~---~~-~--------~~~~~~ 95 (521)
++|+..|..|...|..+-+.- .+++.+.+.+ +++ ...+|.+| +.+-..+ +. + .+++-+
T Consensus 15 d~d~~~R~~AE~~L~q~~K~p-------gFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk 87 (1010)
T KOG1991|consen 15 DSDAKERKAAEQQLNQLEKQP-------GFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDK 87 (1010)
T ss_pred CCChHHHHHHHHHHHHhhcCC-------cHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHH
Confidence 566999999999998877753 2333333333 333 44556554 3332222 21 1 334445
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcC--h-h--
Q 009975 96 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE--P-Q-- 170 (521)
Q Consensus 96 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~-~-- 170 (521)
..+..-+...+-.....+|..-..++..+...-- +..|+.+++.+..++++++...-..|+-++..+++... . +
T Consensus 88 ~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~-p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR 166 (1010)
T KOG1991|consen 88 AVIRENILETIVQVPELIRVQLTACLNTIIKADY-PEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEER 166 (1010)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCC-cccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhcccccc
Confidence 5566655554444467899888888888776533 36799999999999999999999999999999987653 1 1
Q ss_pred ----hhhhhhHHH----HHHhcCCCChH---HHHHHHHHHHHHHHH-hCCCccccchHHH----HHHhc----------C
Q 009975 171 ----DCVAHILPV----IVNFSQDKSWR---VRYMVANQLYELCEA-VGPEPTRMDLVPA----YVRLL----------R 224 (521)
Q Consensus 171 ----~~~~~l~~~----l~~~~~d~~~~---vR~~~~~~l~~i~~~-~~~~~~~~~l~~~----l~~~l----------~ 224 (521)
......+|. +..++.+++.. ..+.+++.+...+.. ++.....++.+.. +...+ -
T Consensus 167 ~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~ 246 (1010)
T KOG1991|consen 167 QPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSL 246 (1010)
T ss_pred ccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccC
Confidence 122234444 44455555433 333344443333321 2222222222222 22211 1
Q ss_pred C-------ChHHHHHHHHHhHHHHHhhhCHH------------HHHHhhhH----HHHHhcc---C---CcHHHHHHHHH
Q 009975 225 D-------NEAEVRIAAAGKVTKFCRILNPE------------LAIQHILP----CVKELSS---D---SSQHVRSALAS 275 (521)
Q Consensus 225 d-------~~~~vr~~a~~~l~~l~~~~~~~------------~~~~~~~~----~l~~~~~---d---~~~~vr~~~~~ 275 (521)
| +-|.+++.|++.+.++.+..|.. .+...+.+ .+.+.+. . -+++|-..+..
T Consensus 247 d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~ 326 (1010)
T KOG1991|consen 247 DPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLN 326 (1010)
T ss_pred ChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 2 23568899999999988877531 11111222 1111111 1 12344444443
Q ss_pred HHHccccccChHHHHHhHHHHHHHhh----------c---------CCChHHH-------------HHHHHHHHHhhhhh
Q 009975 276 VIMGMAPLLGKDATIEQLLPIFLSLL----------K---------DEFPDVR-------------LNIISKLDQVNQVI 323 (521)
Q Consensus 276 ~l~~i~~~~~~~~~~~~l~~~l~~~l----------~---------d~~~~vr-------------~~a~~~l~~~~~~~ 323 (521)
.+.+.. ....+...+-|.+..++ + |+.+.+| .+|...+..++..-
T Consensus 327 fl~~~V---s~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR 403 (1010)
T KOG1991|consen 327 FLEQCV---SHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKR 403 (1010)
T ss_pred HHHHhc---cHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhc
Confidence 333322 22222223333322221 2 2333444 45666677777777
Q ss_pred chhhHhhhHHHHHHHHhc--------CCChHHHHHHHHHhHHHHhhhChh-hh----HHHHHHHHHHHcCCCcHHHHHHH
Q 009975 324 GIDLLSQSLLPAIVELAE--------DRHWRVRLAIIEYIPLLASQLGVG-FF----DDKLGALCMQWLQDKVYSIRDAA 390 (521)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~--------~~~~~vr~~~~~~l~~l~~~~~~~-~~----~~~l~~~l~~~l~d~~~~vr~~a 390 (521)
|++.+ +.+++.+.+.++ ..+++-+..++..++.++..+.+. .+ ...+.+.++-.++++.--.|..|
T Consensus 404 ~ke~l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrara 482 (1010)
T KOG1991|consen 404 GKETL-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARA 482 (1010)
T ss_pred chhhh-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHH
Confidence 77766 677777777654 246777888999999998776543 22 23455666677789999999999
Q ss_pred HHHHHHHH-HHhCHHHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhhcccChH--HH---hhcHHHHHHhhcCCC
Q 009975 391 ANNLKRLA-EEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSE--IT---CSRLLPVVINASKDR 460 (521)
Q Consensus 391 ~~~l~~l~-~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~--~~---~~~il~~l~~~l~d~ 460 (521)
+..++.++ ..+..+.....++....+.+. |+...+|..|+-++..+....... .+ .+.++.-++++.++.
T Consensus 483 c~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~ 559 (1010)
T KOG1991|consen 483 CWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEV 559 (1010)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhc
Confidence 99999998 445544444556666666655 888999999999999998754422 12 334455555555554
No 64
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=6.5e-06 Score=79.42 Aligned_cols=219 Identities=15% Similarity=0.124 Sum_probs=144.6
Q ss_pred hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCc
Q 009975 131 AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP 210 (521)
Q Consensus 131 ~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~ 210 (521)
......+-+-+..+++...+.+|+.|+-++..+....++ ....-+|-+.+-++|+++.|..+|+..+.++++.-++..
T Consensus 139 pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe--Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 139 PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE--ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH--hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 445667778888889999999999999999888877644 344567778888999999999999999999988655543
Q ss_pred cccchHHHHHHhcC--CChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccc---cC
Q 009975 211 TRMDLVPAYVRLLR--DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL---LG 285 (521)
Q Consensus 211 ~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~---~~ 285 (521)
. .+-|.|.+++. +++|. -.-.++.++.+...-+ ..-..++|.+.+++...+.. ....+|+..+... .|
T Consensus 217 L--~LAP~ffkllttSsNNWm-LIKiiKLF~aLtplEP--RLgKKLieplt~li~sT~Am--SLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 217 L--QLAPLFYKLLVTSSNNWV-LIKLLKLFAALTPLEP--RLGKKLIEPITELMESTVAM--SLLYECVNTVVAVSMSSG 289 (877)
T ss_pred c--cccHHHHHHHhccCCCee-hHHHHHHHhhccccCc--hhhhhhhhHHHHHHHhhHHH--HHHHHHHHHheeehhccC
Confidence 2 57788888764 34454 3334444444433212 12355777777777654431 2222333322221 12
Q ss_pred --h-HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHh
Q 009975 286 --K-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 360 (521)
Q Consensus 286 --~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~ 360 (521)
+ .....-.+.-+..++.|+++..+.-.+-+++.+++.-... + ......+.+.+.|.+..+|..++..+..++.
T Consensus 290 ~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~-V-qa~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 290 MSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA-V-QAHKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred CCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH-H-HHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 1 2223344556667788999999999998888887753321 1 4556677788889999999888887766653
No 65
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.14 E-value=4.4e-09 Score=93.04 Aligned_cols=188 Identities=19% Similarity=0.179 Sum_probs=128.2
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhh-------hHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh
Q 009975 292 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ-------SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 364 (521)
Q Consensus 292 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~ 364 (521)
.+...+.+.-.+.+++.|..++..+..++..-.+....+ .+++.+...+.|....+-..++.++..++..+|.
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 344444444466778888888888877766441111112 2234444556677777888899999999999887
Q ss_pred h--hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhh-HHHHHhhhcCcchHHHHHHHHHHHHhhcccC
Q 009975 365 G--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI-TPQVLEMINNPHYLYRMTILRAISLLAPVMG 441 (521)
Q Consensus 365 ~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l-~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~ 441 (521)
. .+.+.++|.++..+.|.+..+|.+|..++..++...+ +...+ .+.+....+++++.+|..++.++..+....+
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS---YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC---cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 5 3567789999999999999999999999999998776 12234 7777888999999999999999999998877
Q ss_pred --hH-----HHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH
Q 009975 442 --SE-----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 482 (521)
Q Consensus 442 --~~-----~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~ 482 (521)
.. .+.+.+.+.+..++.|+++.||..|-+++..+...+|..
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 11 123678999999999999999999999999998887654
No 66
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=6.6e-08 Score=93.88 Aligned_cols=431 Identities=14% Similarity=0.115 Sum_probs=221.4
Q ss_pred HHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChH-HHHHHHHHH
Q 009975 24 PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIY 102 (521)
Q Consensus 24 ~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-~~~~l~~~l 102 (521)
.+.+=+.++++.+|..|++.++.+- .+.+.+++..-+.+..+++...+|..+......++...++. ....+.+.+
T Consensus 90 t~~kD~~d~np~iR~lAlrtm~~l~----v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L 165 (734)
T KOG1061|consen 90 TFLKDCEDPNPLIRALALRTMGCLR----VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDAL 165 (734)
T ss_pred hhhccCCCCCHHHHHHHhhceeeEe----ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHH
Confidence 3334445566666666665544321 12233333333334444444455544444433433222222 223455555
Q ss_pred HHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhh-hhhhhHHHHH
Q 009975 103 TQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD-CVAHILPVIV 181 (521)
Q Consensus 103 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~ 181 (521)
..++.|.+|.|-..|..+|..+.+.-..........+++..++..-++-.-..-+..+..++...+++. ....+...+.
T Consensus 166 ~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~ 245 (734)
T KOG1061|consen 166 KDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLT 245 (734)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhh
Confidence 566666666666666666666655433211111111111222211111112223344455555544432 2233445555
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHH
Q 009975 182 NFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK 259 (521)
Q Consensus 182 ~~~~d~~~~vR~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 259 (521)
..+++.+..|-..+.+.+-.....+.. +.....+-|.+..++..+. ++...++..+..+....+. .+...+.-++.
T Consensus 246 p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~-~~~~~~~~Ff~ 323 (734)
T KOG1061|consen 246 PRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE-ILKVEIKVFFC 323 (734)
T ss_pred hhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH-HHHhHhHeeee
Confidence 555555555555555555544443332 1112334444444444444 7777777777776665443 32222222221
Q ss_pred HhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHH
Q 009975 260 ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 339 (521)
Q Consensus 260 ~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~ 339 (521)
+. .|+- .|+..=.+++..++. .. ...++++-+.....+-+.+.-+.++.+++.++...... +..++.+.++
T Consensus 324 ky-nDPi-YvK~eKleil~~la~---~~-nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLel 394 (734)
T KOG1061|consen 324 KY-NDPI-YVKLEKLEILIELAN---DA-NLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLEL 394 (734)
T ss_pred ec-CCch-hhHHHHHHHHHHHhh---Hh-HHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHH
Confidence 11 2222 344444555554441 11 12346666777777888888889999999988765543 6688888888
Q ss_pred hcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhh
Q 009975 340 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI 418 (521)
Q Consensus 340 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l 418 (521)
++-+..-+...++..+..+...++... +.+++.+-..+.. .+++.|.+.+..+|.....+.. ...++..+.+..
T Consensus 395 l~~~~~yvvqE~~vvi~dilRkyP~~~--~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~---a~elL~~f~en~ 469 (734)
T KOG1061|consen 395 LETKVDYVVQEAIVVIRDILRKYPNKY--ESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN---ALELLESFLENF 469 (734)
T ss_pred HhhcccceeeehhHHHHhhhhcCCCch--hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc---HHHHHHHHHhhc
Confidence 774433333344445555555555432 4455555444433 5677888888888888776643 245666677777
Q ss_pred cCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHh-hcCCC-CchHHHHHHHHHHHHH
Q 009975 419 NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVIN-ASKDR-VPNIKFNVAKVLQSLI 476 (521)
Q Consensus 419 ~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~-~l~d~-~~~VR~~a~~~l~~~~ 476 (521)
.|....++...+.+.-+++-..+.+ .+..+..++. +..|. ++++|..++--...+.
T Consensus 470 ~dE~~~Vql~LLta~ik~Fl~~p~~--tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 470 KDETAEVQLELLTAAIKLFLKKPTE--TQELLQGVLPLATADTDNPDLRDRGLIYWRLLS 527 (734)
T ss_pred ccchHHHHHHHHHHHHHHHhcCCcc--HHHHHHHHHhhhhccccChhhhhhHHHHHHHhh
Confidence 7777777776666665555433321 2334444444 33443 6689998887665554
No 67
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=8.6e-07 Score=85.22 Aligned_cols=400 Identities=14% Similarity=0.084 Sum_probs=204.0
Q ss_pred HhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHH
Q 009975 58 DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDI 137 (521)
Q Consensus 58 ~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 137 (521)
..+-+-+..++....+.+|..++.++..++.+-|+. ...-+|-+.+-+.|+||.|..+|+..+..+++..++... .+
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA-lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL--~L 219 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA-LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL--QL 219 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc--cc
Confidence 456666666666666667777766666666555554 445566666667788888888888888888777664332 34
Q ss_pred HHHHHHhhcC-CChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHH-hCCC--ccc-
Q 009975 138 MSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA-VGPE--PTR- 212 (521)
Q Consensus 138 ~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~-~~~~--~~~- 212 (521)
-|.+.+++.+ .+-.+-...++.++.+...-+ ...+.+++.+..++.+.+. ..-..+++..++.. +... ...
T Consensus 220 AP~ffkllttSsNNWmLIKiiKLF~aLtplEP--RLgKKLieplt~li~sT~A--mSLlYECvNTVVa~s~s~g~~d~~a 295 (877)
T KOG1059|consen 220 APLFYKLLVTSSNNWVLIKLLKLFAALTPLEP--RLGKKLIEPITELMESTVA--MSLLYECVNTVVAVSMSSGMSDHSA 295 (877)
T ss_pred cHHHHHHHhccCCCeehHHHHHHHhhccccCc--hhhhhhhhHHHHHHHhhHH--HHHHHHHHHHheeehhccCCCCcHH
Confidence 5555555543 233344445566665554421 2344566666666655442 12223333333221 1111 111
Q ss_pred --cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHH
Q 009975 213 --MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATI 290 (521)
Q Consensus 213 --~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~ 290 (521)
.--+.-+..++.|.+++.+..++-+++.++...+... ..--..+.+++.|.+..+|.-++..+..+. .++...
T Consensus 296 siqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V--qa~kdlIlrcL~DkD~SIRlrALdLl~gmV---skkNl~ 370 (877)
T KOG1059|consen 296 SIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV--QAHKDLILRCLDDKDESIRLRALDLLYGMV---SKKNLM 370 (877)
T ss_pred HHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH--HHhHHHHHHHhccCCchhHHHHHHHHHHHh---hhhhHH
Confidence 1223334456788889999999999998888655432 233455677788999999988888887775 233322
Q ss_pred HhHHHHHHHhhcCCC-hHHHHHHHHHHHHhhhhhchhhH--hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhh
Q 009975 291 EQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 367 (521)
Q Consensus 291 ~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~ 367 (521)
.++..++..+.+.+ ...|...+..+-.+|..-....+ ++..+..+.++..=+..+.-.-+.+.+..++-.+.. .
T Consensus 371 -eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~--i 447 (877)
T KOG1059|consen 371 -EIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPS--I 447 (877)
T ss_pred -HHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechh--h
Confidence 33444444333333 35555555544444432211100 144455555554333322222222222222211111 1
Q ss_pred HHHHHHHHHHHcCCC-----------cHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcC-cchHHHHHHHHHHHH
Q 009975 368 DDKLGALCMQWLQDK-----------VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN-PHYLYRMTILRAISL 435 (521)
Q Consensus 368 ~~~l~~~l~~~l~d~-----------~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~ 435 (521)
.+..+..+..++.|+ -.+|-.+|+.++|.+....... ..++..+.+--.+ -...+....+..+..
T Consensus 448 R~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~---~~~leamlrpr~~~lp~~iq~vyvqni~K 524 (877)
T KOG1059|consen 448 RPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENP---NDTLEAMLRPRSDLLPGHIQAVYVQNIVK 524 (877)
T ss_pred hHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCH---HHHHHHHhcCccccCchHHHHHHHHHHHH
Confidence 111222222222222 4567788999999988765432 2233333221111 012333333333333
Q ss_pred h----hcccCh-------HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHH
Q 009975 436 L----APVMGS-------EITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 475 (521)
Q Consensus 436 l----~~~~~~-------~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~ 475 (521)
+ +..... ....+.++..+-+.....+-+|+..|-.++..+
T Consensus 525 lfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~li 575 (877)
T KOG1059|consen 525 LFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLELI 575 (877)
T ss_pred HHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHH
Confidence 3 221111 112244555666666667778888866655544
No 68
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.2e-05 Score=80.50 Aligned_cols=407 Identities=17% Similarity=0.141 Sum_probs=238.9
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHH-hhcCCCh-hHHHHHHHHHHHHh-hhcChh---
Q 009975 97 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFED-LTQDDQD-SVRLLAVEGCAALG-KLLEPQ--- 170 (521)
Q Consensus 97 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-l~~d~~~-~vr~~a~~~l~~l~-~~~~~~--- 170 (521)
.+...+.. +-|.+|.+|++|-..|..+-+. +.+++.+.+ .+.|+.+ .||.+|.--+.+.. +..++.
T Consensus 5 ~l~~~~~~-T~d~d~~~R~~AE~~L~q~~K~-------pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~ 76 (1010)
T KOG1991|consen 5 SLLQIFRA-TIDSDAKERKAAEQQLNQLEKQ-------PGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAP 76 (1010)
T ss_pred HHHHHHHH-hcCCChHHHHHHHHHHHHhhcC-------CcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCC
Confidence 44444444 4566799999999999877543 223333333 3444443 67887766666553 333221
Q ss_pred --------hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHH
Q 009975 171 --------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFC 242 (521)
Q Consensus 171 --------~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 242 (521)
+.+..+..-+...+-....-+|-....++..|...--+ ..++.+++....+++.++...-..++-++..+.
T Consensus 77 g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~ 155 (1010)
T KOG1991|consen 77 GRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLF 155 (1010)
T ss_pred CCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHH
Confidence 12223444444444444556788777777666643222 346889999999999999888889999999888
Q ss_pred hhhC-----H--------HHHHHhhhHHHHHhccCCcHHH---HHHHHHHHHcccc-ccCh----HHHHHhHHHHHHHhh
Q 009975 243 RILN-----P--------ELAIQHILPCVKELSSDSSQHV---RSALASVIMGMAP-LLGK----DATIEQLLPIFLSLL 301 (521)
Q Consensus 243 ~~~~-----~--------~~~~~~~~~~l~~~~~d~~~~v---r~~~~~~l~~i~~-~~~~----~~~~~~l~~~l~~~l 301 (521)
+... . +.+.+.+...+..++.+.+... ....++.+...+. .++. ......++..+...+
T Consensus 156 k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~ 235 (1010)
T KOG1991|consen 156 KTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSIL 235 (1010)
T ss_pred HHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHH
Confidence 8763 0 1222334444455566655432 2223332222221 1222 223445566666666
Q ss_pred cCC--------Ch---------HHHHHHHHHHHHhhhhhchh------------hHhh----hHHHHHHHHhc---CC--
Q 009975 302 KDE--------FP---------DVRLNIISKLDQVNQVIGID------------LLSQ----SLLPAIVELAE---DR-- 343 (521)
Q Consensus 302 ~d~--------~~---------~vr~~a~~~l~~~~~~~~~~------------~~~~----~~~~~l~~~~~---~~-- 343 (521)
+-+ ++ .+++.|+..+.++.+..|.. .+.. .++..+.+.+. ..
T Consensus 236 ~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~y 315 (1010)
T KOG1991|consen 236 NRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLY 315 (1010)
T ss_pred cCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 532 22 35778888888887766521 1112 22222222221 12
Q ss_pred -ChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHH--------c-----------CCCcHHHHH-------------HH
Q 009975 344 -HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW--------L-----------QDKVYSIRD-------------AA 390 (521)
Q Consensus 344 -~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~--------l-----------~d~~~~vr~-------------~a 390 (521)
.+++-..++.. +...+....+...+-|.+... + .|+..-+|+ +|
T Consensus 316 ls~rvl~~~l~f---l~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa 392 (1010)
T KOG1991|consen 316 LSDRVLYYLLNF---LEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAA 392 (1010)
T ss_pred CCHHHHHHHHHH---HHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHH
Confidence 22333333333 333333332222232322111 1 244444553 46
Q ss_pred HHHHHHHHHHhCHHHHHhhhHHHHHhhhc--------CcchHHHHHHHHHHHHhhcccChH-----HHhhcHHHHHHhhc
Q 009975 391 ANNLKRLAEEFGPEWAMQHITPQVLEMIN--------NPHYLYRMTILRAISLLAPVMGSE-----ITCSRLLPVVINAS 457 (521)
Q Consensus 391 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--------~~~~~~r~~a~~~l~~l~~~~~~~-----~~~~~il~~l~~~l 457 (521)
...+-.++..-|.+.+ ..+++.+.+.++ ..+++.+..|+.++|.++..+..+ ....-+.++++..+
T Consensus 393 ~~~l~~~~~KR~ke~l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f 471 (1010)
T KOG1991|consen 393 LDFLTTLVSKRGKETL-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEF 471 (1010)
T ss_pred HHHHHHHHHhcchhhh-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhh
Confidence 6666666666555543 446666666554 246888999999999999765542 23345678888899
Q ss_pred CCCCchHHHHHHHHHHHHH-hhhchHHHHhhHHHHHHHh-cCCCCccHHHHHHHHHHHHHH
Q 009975 458 KDRVPNIKFNVAKVLQSLI-PIVDQSMVEKTIRPCLVEL-TEDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 458 ~d~~~~VR~~a~~~l~~~~-~~~~~~~~~~~~~~~l~~l-~~D~~~~vr~~a~~al~~l~~ 516 (521)
+++.-..|..||+.++.++ ..+..+.....++....++ .+|.+--||-.|+-|++.+..
T Consensus 472 ~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~ 532 (1010)
T KOG1991|consen 472 QSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFIS 532 (1010)
T ss_pred cCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHh
Confidence 9999999999999999998 4566555566777777765 459999999999999998754
No 69
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=8.2e-07 Score=86.25 Aligned_cols=460 Identities=14% Similarity=0.104 Sum_probs=262.4
Q ss_pred hhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHh---hcCCCCcchhhhhhhhhhhcCCCChHHHHH
Q 009975 21 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRL---AAGEWFTARVSACGLFHIAYPSAPDILKTE 97 (521)
Q Consensus 21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~---~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 97 (521)
++-.+.++..+.|...|+..--+++++...-. +.+-....+ .+......|..+++.+-.+. +......
T Consensus 65 ~ff~~tKlfQskd~~LRr~vYl~Ikels~ise------dviivtsslmkD~t~~~d~yr~~AiR~L~~I~---d~~m~~~ 135 (865)
T KOG1078|consen 65 LFFAITKLFQSKDVSLRRMVYLAIKELSKISE------DVIIVTSSLMKDMTGKEDLYRAAAIRALCSII---DGTMLQA 135 (865)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHhhccccch------hhhhhhHHHHhhccCCCcchhHHHHHHHHhhc---CcchhHH
Confidence 44445566666777777776666665554322 222222222 22334455666665554443 3334556
Q ss_pred HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhH
Q 009975 98 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL 177 (521)
Q Consensus 98 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 177 (521)
+-..+.+..-|+++.++.+|.-.=..+.... ................+.+..++.-|...+..+-++- .-.+-
T Consensus 136 iery~kqaivd~~~avSsaalvss~hll~~~--~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~d-----rla~s 208 (865)
T KOG1078|consen 136 IERYMKQAIVDKNPAVSSAALVSSYHLLPIS--FDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKND-----RLAVS 208 (865)
T ss_pred HHHHHHhHeeccccccchHHHHHHhhhhccc--HHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhh-----HHHHH
Confidence 6667777777888888776653322222211 1111222222233334444456666666666654431 11122
Q ss_pred HHHHHhcCC--CChHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhh
Q 009975 178 PVIVNFSQD--KSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 254 (521)
Q Consensus 178 ~~l~~~~~d--~~~~vR~~~~~~l~~i~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 254 (521)
.++..+... .++..+....+. .++.+..+ .....+.+.+..++......|-..|..++..+....+.+- ...
T Consensus 209 klv~~~~~~~~~~~~A~~~lir~---~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l--~pa 283 (865)
T KOG1078|consen 209 KLVQKFTRGSLKSPLAVCMLIRI---ASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSREL--APA 283 (865)
T ss_pred HHHHHHccccccchhHHHHHHHH---HHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhc--chH
Confidence 222222221 222222222221 22222222 2235688889999998888888888888877665444321 224
Q ss_pred hHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHH
Q 009975 255 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 334 (521)
Q Consensus 255 ~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 334 (521)
+..+.-+++.+....|.++...+.+++...+... ...-+-+..+..|.+-.+-.-|...+-+-...... +.++.
T Consensus 284 vs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v--~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv----~rLm~ 357 (865)
T KOG1078|consen 284 VSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV--TVCNLDLESLITDSNRSIATLAITTLLKTGTESSV----DRLMK 357 (865)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc--cccchhHHhhhcccccchhHHHHHHHHHhcchhHH----HHHHH
Confidence 5666777888999999999999999886665432 12233455667777766555555544443332222 44444
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHH
Q 009975 335 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 413 (521)
Q Consensus 335 ~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 413 (521)
.+..+..|-+...+..+++++..++..++.. ...+++.+...|. +...+-+.+...++-.++..... ..+..+..
T Consensus 358 qI~~fv~disDeFKivvvdai~sLc~~fp~k--~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pd--sKe~~L~~ 433 (865)
T KOG1078|consen 358 QISSFVSDISDEFKIVVVDAIRSLCLKFPRK--HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPD--SKERGLEH 433 (865)
T ss_pred HHHHHHHhccccceEEeHHHHHHHHhhccHH--HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcc--hhhHHHHH
Confidence 4445554444445555566666666655543 2234555555544 45667777888887777654322 24556667
Q ss_pred HHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHH
Q 009975 414 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLV 493 (521)
Q Consensus 414 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~ 493 (521)
|.+++.|.. .+.-+...+..++............+.++....-=.+..||.+|..++.++. .+.....+.+.-.+.
T Consensus 434 LCefIEDce--~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllk 509 (865)
T KOG1078|consen 434 LCEFIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLK 509 (865)
T ss_pred HHHHHHhcc--chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHH
Confidence 777766643 3345566666666544433223444455555444457889999999999988 455556678888999
Q ss_pred HhcCCCCccHHHHHHHHHHHHH
Q 009975 494 ELTEDPDVDVRFFATQAIQSID 515 (521)
Q Consensus 494 ~l~~D~~~~vr~~a~~al~~l~ 515 (521)
+++.|+|.+||..|.-++..+.
T Consensus 510 Rc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 510 RCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHhcCchHHHHHHHHHHHHHhh
Confidence 9999999999999999988776
No 70
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=99.06 E-value=4.5e-09 Score=100.83 Aligned_cols=254 Identities=13% Similarity=0.189 Sum_probs=204.1
Q ss_pred CChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCC
Q 009975 225 DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE 304 (521)
Q Consensus 225 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~ 304 (521)
-.+.+-|..-...|......++.+.....++|.+...+.-.+ . -...+..+-.+...+....+...++|.+.++++..
T Consensus 265 lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~-a-~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~ 342 (690)
T KOG1243|consen 265 LKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD-A-ASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSP 342 (690)
T ss_pred cCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc-c-chhhhhHHHHhhhhccccccccchhhhHHHHhcCc
Confidence 334455666666666666677777777788888876654322 0 11122222333444444556778999999999999
Q ss_pred ChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcH
Q 009975 305 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVY 384 (521)
Q Consensus 305 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~ 384 (521)
+..+|...+..+..+...+.++.+.+.++|.+..-+.|.+..+|...+.++..++..+++......++..+-.+-.|.+.
T Consensus 343 Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~ 422 (690)
T KOG1243|consen 343 DRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHG 422 (690)
T ss_pred chHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccC
Confidence 99999999999999999999999989999999999999999999999999999999999987788888888888889999
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchH
Q 009975 385 SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNI 464 (521)
Q Consensus 385 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~V 464 (521)
.+|....-|++.+...+........+...+...+.|+-..-|.+++..+....+.+....+...++|.+..+..|+...|
T Consensus 423 ~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~v 502 (690)
T KOG1243|consen 423 GIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTV 502 (690)
T ss_pred cccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccch
Confidence 99999999999988776544333444555555788888889999999999999988888888999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 009975 465 KFNVAKVLQSLIPIVD 480 (521)
Q Consensus 465 R~~a~~~l~~~~~~~~ 480 (521)
|..|..++........
T Consensus 503 r~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 503 RDTAEKAIRQFLEKLE 518 (690)
T ss_pred hhHHHHHHHHHHhhhh
Confidence 9999999988776543
No 71
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.04 E-value=4.8e-06 Score=86.73 Aligned_cols=406 Identities=15% Similarity=0.149 Sum_probs=227.5
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhh
Q 009975 96 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH 175 (521)
Q Consensus 96 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 175 (521)
+..+..|...+..+...+|..|.++|..+++.-+.-...+.+..-+..-+.|....||.+|++.+|...-.. ++...+
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~--~e~~~q 892 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI--PELIFQ 892 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc--HHHHHH
Confidence 445566677777888999999999999998754332344556666677778899999999999999876543 234556
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH-H---HH
Q 009975 176 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-L---AI 251 (521)
Q Consensus 176 l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~---~~ 251 (521)
....+.+...|+...||+.+.+.+..++...+.=....++..-+..-..|++..|+..+.+++..+.-.-.++ . -.
T Consensus 893 yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~ 972 (1692)
T KOG1020|consen 893 YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAK 972 (1692)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHH
Confidence 6777788889999999999999999998765432222344455555667888889999999988765432211 0 00
Q ss_pred HhhhHHH-------HHhccCCcHHHHHHHHHHHH--ccccccChHH--HHHhHHHHHHHhh------------cCCChHH
Q 009975 252 QHILPCV-------KELSSDSSQHVRSALASVIM--GMAPLLGKDA--TIEQLLPIFLSLL------------KDEFPDV 308 (521)
Q Consensus 252 ~~~~~~l-------~~~~~d~~~~vr~~~~~~l~--~i~~~~~~~~--~~~~l~~~l~~~l------------~d~~~~v 308 (521)
..-++.. ..+..+..+..-...+..-. .......+.. ..+..+..+..++ .+.+.++
T Consensus 973 ~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~ 1052 (1692)
T KOG1020|consen 973 ARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEV 1052 (1692)
T ss_pred HHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchh
Confidence 0001111 11222222211111110000 0000000000 0111122222111 2233344
Q ss_pred H-HHHHHHHHHhhhhhchhhH----hhhHHHHHHHHh-cCCChHHHHHHHHHhHHHHhhhCh--hhhHHHHHHHHHHHcC
Q 009975 309 R-LNIISKLDQVNQVIGIDLL----SQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQ 380 (521)
Q Consensus 309 r-~~a~~~l~~~~~~~~~~~~----~~~~~~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~ 380 (521)
| .+.+..|..+++.-+ ..+ ...+.|.+..-. .-...++-..++..+..+...+.. +.|...+-..++..+-
T Consensus 1053 ~~~~~lstL~~FskirP-~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~ 1131 (1692)
T KOG1020|consen 1053 RLLAYLSTLFVFSKIRP-QLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIV 1131 (1692)
T ss_pred HHHHHHHHHHHHHhcCc-hhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHH
Confidence 4 344555555554322 211 133444443321 112345556666666666555432 3444555555555554
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCHHH-HHhhhHHHHHhhh-------cCc----chHHHHHHHHHHHHhhcccC-------
Q 009975 381 DKVYSIRDAAANNLKRLAEEFGPEW-AMQHITPQVLEMI-------NNP----HYLYRMTILRAISLLAPVMG------- 441 (521)
Q Consensus 381 d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l-------~~~----~~~~r~~a~~~l~~l~~~~~------- 441 (521)
-..-..-..|..|++.++....... ....++..+...+ ++. +...-...+.++|.++.++.
T Consensus 1132 k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~ 1211 (1692)
T KOG1020|consen 1132 KMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSND 1211 (1692)
T ss_pred hcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCC
Confidence 4455555677888888887532211 1222222222211 122 33455677888888887432
Q ss_pred -h------HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHH
Q 009975 442 -S------EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVR 504 (521)
Q Consensus 442 -~------~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr 504 (521)
. +...+.++..+....++....+|..|+..+|.++-.-+.=.+.+.+...+...++|...++.
T Consensus 1212 g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~ 1281 (1692)
T KOG1020|consen 1212 GKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIK 1281 (1692)
T ss_pred CccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHH
Confidence 1 12345566666667788889999999999999987644444556677777765555544443
No 72
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=99.02 E-value=8e-06 Score=81.33 Aligned_cols=143 Identities=15% Similarity=0.103 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhh
Q 009975 95 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 174 (521)
Q Consensus 95 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 174 (521)
...+++-+.+.....|.++++-.-..+..+++..+. ..-..++.+.+=++|+++.+|..|++.++.+- ......
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~--~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~----~~el~~ 126 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPE--LALLAVNTIQKDLQDPNEEIRGFALRTLSLLR----VKELLG 126 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHhhccCCCHHHHHHHHHHHHhcC----hHHHHH
Confidence 455666555555566777777776666666655442 12233555666677888999999988887654 334667
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccc-hHHHHHHhcCCChHHHHHHHHHhHHHHHhh
Q 009975 175 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD-LVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 244 (521)
Q Consensus 175 ~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 244 (521)
.+++.+.++++|+++.||+.|+-++.++-+ .+++..... +...+..++.|+++.|...|+.++..+-..
T Consensus 127 ~~~~~ik~~l~d~~ayVRk~Aalav~kly~-ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 NIIDPIKKLLTDPHAYVRKTAALAVAKLYR-LDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHh-cCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 788888999999999999999998887765 333333333 778888888899999988888888776554
No 73
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=5.4e-05 Score=77.62 Aligned_cols=456 Identities=13% Similarity=0.121 Sum_probs=258.2
Q ss_pred hhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCC-hHHHHHHHH
Q 009975 22 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP-DILKTELRS 100 (521)
Q Consensus 22 ~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~l~~ 100 (521)
+..|..+..++|..-+..--.+++....++||+.+.. ++|+=. ..+.....|.=.+-++.....+.+ ....+.++|
T Consensus 393 L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~-~lpLnl--~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivp 469 (1176)
T KOG1248|consen 393 LEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLT-ILPLNL--HAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVP 469 (1176)
T ss_pred HHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHH-Hcchhc--cccccccchhHhHHHHHHhhccCcHHHHHHHHHH
Confidence 4444445557777778888889999999999987642 233221 112222222222222222111111 123455666
Q ss_pred HHHHhcC------CCChHHHHHHHHhHH-HHHHhhCc--------hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 009975 101 IYTQLCQ------DDMPMVRRSAASNLG-KFAATVEP--------AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK 165 (521)
Q Consensus 101 ~l~~l~~------~~~~~vr~~a~~~l~-~l~~~~~~--------~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 165 (521)
+...+.. +....++ ..+.|. ++...++. ......+-|.+...+.. .+..|...+..|..+.+
T Consensus 470 la~sl~~K~~~l~~~~~~~~--~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~-~~elr~~Ic~sL~~Lv~ 546 (1176)
T KOG1248|consen 470 LAMSLQLKAKKLKEAGSQVS--LYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLK-RPELRETICNSLRMLVE 546 (1176)
T ss_pred HHHHHHHHHHhhhhccCcHH--HHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhc-chHhHHHHHHHHHHHHH
Confidence 5554421 1111111 222222 23333321 11223444444443332 33778888888888776
Q ss_pred hcCh--------h---hhhhhhHHHHHHhcCCC------ChHHHHHHHHHHH-HHHHHhCCCccccchHHHHHHhcCCCh
Q 009975 166 LLEP--------Q---DCVAHILPVIVNFSQDK------SWRVRYMVANQLY-ELCEAVGPEPTRMDLVPAYVRLLRDNE 227 (521)
Q Consensus 166 ~~~~--------~---~~~~~l~~~l~~~~~d~------~~~vR~~~~~~l~-~i~~~~~~~~~~~~l~~~l~~~l~d~~ 227 (521)
.-.+ + ..-..++|.+...-..+ ....|....+.+. ..... .+......+...+.....|.+
T Consensus 547 ~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~-t~~dv~~~l~~s~~e~as~~~ 625 (1176)
T KOG1248|consen 547 QNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTV-TPTDVVGSLKDSAGELASDLD 625 (1176)
T ss_pred cCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhc-ccHHHHHHHHHHHHhHhccch
Confidence 6311 0 11123555555543322 2234444444333 11111 112222445555666666665
Q ss_pred HHHHHHH----HHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh----HHHHHhHHHHHHH
Q 009975 228 AEVRIAA----AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----DATIEQLLPIFLS 299 (521)
Q Consensus 228 ~~vr~~a----~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~----~~~~~~l~~~l~~ 299 (521)
..++.-- +..+..++...+...+. .+....-..-+..+..++.-+...+..+...-.- ....+++...+..
T Consensus 626 ~s~~~~~~~slLdl~~~~a~~~~e~~vs-~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~d 704 (1176)
T KOG1248|consen 626 ESVASFKTLSLLDLLIALAPVQTESQVS-KLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLD 704 (1176)
T ss_pred hhhhhHHHHHHHHHHHhhhccccchhHH-HHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHH
Confidence 5554322 22233333333333322 2222222223344677888888888887766211 1223456666677
Q ss_pred hhcCCChHHHHHHHHHHHHhhhhhchhh--HhhhHHHHHHHHhcCCChHHHHHHHHHhHHHH--hh---hChhh---hHH
Q 009975 300 LLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA--SQ---LGVGF---FDD 369 (521)
Q Consensus 300 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~--~~---~~~~~---~~~ 369 (521)
.+++.....|...+.++..+.+..+.+. +....+|.+.-..++.+..-|..+..+|..+. .. .|.+. ..+
T Consensus 705 s~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~ln 784 (1176)
T KOG1248|consen 705 SFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILN 784 (1176)
T ss_pred HHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHH
Confidence 7777888899999999999998888443 23444554444447778788888877777766 22 24333 234
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh---CHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH--
Q 009975 370 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEF---GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI-- 444 (521)
Q Consensus 370 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~-- 444 (521)
.+++.+...+-.....++...+-++..+...+ ..+.....++..+...+.+.+..++.+|+.++..+...++..-
T Consensus 785 efl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~ 864 (1176)
T KOG1248|consen 785 EFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLS 864 (1176)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHh
Confidence 45555555544444445444455555555444 2344566778888888999999999999999999998777643
Q ss_pred -HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHH
Q 009975 445 -TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE 485 (521)
Q Consensus 445 -~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~ 485 (521)
+.+.++|.++.+++|....+|..+-..+..++..+|.+.+.
T Consensus 865 ~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe 906 (1176)
T KOG1248|consen 865 PHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELE 906 (1176)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 45778999999999999999999999999999999987664
No 74
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.96 E-value=2.4e-07 Score=93.45 Aligned_cols=193 Identities=12% Similarity=0.140 Sum_probs=140.6
Q ss_pred HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc---hhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh
Q 009975 289 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 365 (521)
Q Consensus 289 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~ 365 (521)
....+-+.+...+.+.++.-|..|++.+-..++.-+ .......+...+.-...|.|-.+...++..|..+++.++..
T Consensus 250 i~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~ 329 (815)
T KOG1820|consen 250 ILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL 329 (815)
T ss_pred hhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh
Confidence 344555555666666666666666666655544332 11111233344444567778888888888888888887764
Q ss_pred --hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh-
Q 009975 366 --FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS- 442 (521)
Q Consensus 366 --~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~- 442 (521)
.+...+.|.++..++|....+|.++..++..++..+. ...+.+.+...+++.+++.|..+..++.......+.
T Consensus 330 ~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 330 FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 3345577888899999999999999999888887554 456777888889999999999999999998887772
Q ss_pred ---HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHH
Q 009975 443 ---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE 485 (521)
Q Consensus 443 ---~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~ 485 (521)
......+.|.++...+|....||.+|.++++.+...+|.+.+.
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~ 451 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFK 451 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 2234678899999999999999999999999999988876654
No 75
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.96 E-value=6.3e-08 Score=97.57 Aligned_cols=359 Identities=17% Similarity=0.193 Sum_probs=234.2
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccc-cc
Q 009975 136 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-MD 214 (521)
Q Consensus 136 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~-~~ 214 (521)
.+++....++......+|.....++..+... .........+..+..-..+..=..++.++..++...+..... ..
T Consensus 63 ~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~----~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~ 138 (815)
T KOG1820|consen 63 QLLSFGLKCLDSKRVNIRDTKTQSLLRIGKL----EDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKA 138 (815)
T ss_pred eeccchhhhcccccccccCcchhHHHHHHHh----hhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCcccc
Confidence 4556666666666666677666666666222 223445555566666666666666777777777776644332 23
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHH--HHHh
Q 009975 215 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQ 292 (521)
Q Consensus 215 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~--~~~~ 292 (521)
+++.+-++. +..||..+...+..+-...|... .+.+. +......++.+..+.|... +.+.
T Consensus 139 ~~~~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~-----~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~ 200 (815)
T KOG1820|consen 139 FIKHVGSLA---DKNVRSEASKLLVEIYRWTGDAS-----KPLLF----------KASAPGLMGKLGSYQGKSMMSFFNE 200 (815)
T ss_pred ccccCcccc---ccccchhhcccchhhhhhcCCCc-----Ccccc----------hhhhHHHHHHHHhhccccccccccc
Confidence 444444444 55799999999988887666432 11110 2222233333333222211 0001
Q ss_pred HHHHHHHhhc---CCChHHHHHHHHHHHHh-----------hhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHH
Q 009975 293 LLPIFLSLLK---DEFPDVRLNIISKLDQV-----------NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 358 (521)
Q Consensus 293 l~~~l~~~l~---d~~~~vr~~a~~~l~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l 358 (521)
--|...+... +++..-+...-...... ...+.+......+-+.+..-+.+++|.-|..+++.+...
T Consensus 201 ~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~ 280 (815)
T KOG1820|consen 201 KRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAI 280 (815)
T ss_pred cccccccccccccCCChhhcccccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHH
Confidence 1111111111 11111111110000000 011222334467777888888999999999999988887
Q ss_pred HhhhC---hhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCcchHHHHHHHHHH
Q 009975 359 ASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRAI 433 (521)
Q Consensus 359 ~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~~~~~~~r~~a~~~l 433 (521)
.+.-+ ...+...+...+-..+.|.|..|-..++.++..++..++..+ +...++|.+.+.+.+....+|.++..++
T Consensus 281 l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~ 360 (815)
T KOG1820|consen 281 LEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKAL 360 (815)
T ss_pred HhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHH
Confidence 76655 123345566666677899999999999999999999887654 4567899999999999999999999999
Q ss_pred HHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch----HHHHhhHHHHHHHhcCCCCccHHHHHHH
Q 009975 434 SLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ----SMVEKTIRPCLVELTEDPDVDVRFFATQ 509 (521)
Q Consensus 434 ~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~----~~~~~~~~~~l~~l~~D~~~~vr~~a~~ 509 (521)
..++... ....+.+.+...+++.++.+|......+.......++ ......+.|.+....+|.+.+||..|..
T Consensus 361 d~~~ns~----~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e 436 (815)
T KOG1820|consen 361 DAILNST----PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALE 436 (815)
T ss_pred HHHHhcc----cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHH
Confidence 8888733 3467888999999999999999999999988887773 2334778999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 009975 510 AIQSIDHVMMS 520 (521)
Q Consensus 510 al~~l~~~~~~ 520 (521)
++..+.+..|.
T Consensus 437 ~~~~v~k~~Ge 447 (815)
T KOG1820|consen 437 AVAAVMKVHGE 447 (815)
T ss_pred HHHHHHHHhhH
Confidence 99999988764
No 76
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=1.7e-05 Score=76.34 Aligned_cols=242 Identities=13% Similarity=0.110 Sum_probs=140.4
Q ss_pred CCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHH---------
Q 009975 108 DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP--------- 178 (521)
Q Consensus 108 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~--------- 178 (521)
+....||+.++-++-.+.+..+.-....+...-+.++++|.+-.|-.++...+..+++..+++ +...+.+
T Consensus 159 ~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~-yk~~~~~avs~L~riv 237 (938)
T KOG1077|consen 159 SSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPES-YKTCLPLAVSRLSRIV 237 (938)
T ss_pred cchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHH-HhhhHHHHHHHHHHHH
Confidence 344566766666666666665543333345555556666666666666666666666655442 1111111
Q ss_pred --------------------------HHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC-hHHHH
Q 009975 179 --------------------------VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN-EAEVR 231 (521)
Q Consensus 179 --------------------------~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr 231 (521)
++..+-...++.+|....+++.++.....+.... ++. ....+
T Consensus 238 ~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~-----------k~vq~~na~ 306 (938)
T KOG1077|consen 238 VVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKS-----------KKVQHSNAK 306 (938)
T ss_pred hhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccc-----------cchHhhhhH
Confidence 1111111223333444444433333211111000 010 11222
Q ss_pred HHHHHhHHHHHhhhCHH-HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhc-CCChHHH
Q 009975 232 IAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFPDVR 309 (521)
Q Consensus 232 ~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr 309 (521)
.+.+--.-.++.+++++ ......+..+-+++.+++..+|.-+.+.+..++..-.......+=...++..++ +.+-.+|
T Consensus 307 naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSir 386 (938)
T KOG1077|consen 307 NAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIR 386 (938)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHH
Confidence 33322223344444433 445667777888889999999999999998887653332223333666777777 8889999
Q ss_pred HHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh
Q 009975 310 LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 365 (521)
Q Consensus 310 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~ 365 (521)
+.|+.-|..++..-.. +.++..+.+++...++.+|+..+--..-+++.+..+
T Consensus 387 rravDLLY~mcD~~Na----k~IV~elLqYL~tAd~sireeivlKvAILaEKyAtD 438 (938)
T KOG1077|consen 387 RRAVDLLYAMCDVSNA----KQIVAELLQYLETADYSIREEIVLKVAILAEKYATD 438 (938)
T ss_pred HHHHHHHHHHhchhhH----HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999875443 566777788888889999998888888888777655
No 77
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.92 E-value=1.5e-05 Score=76.87 Aligned_cols=304 Identities=17% Similarity=0.197 Sum_probs=186.6
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCc---c-----ccchHHHHHHhcC-----CC--hHHHHHHHHHhHHHHHhhhCHHH---
Q 009975 188 SWRVRYMVANQLYELCEAVGPEP---T-----RMDLVPAYVRLLR-----DN--EAEVRIAAAGKVTKFCRILNPEL--- 249 (521)
Q Consensus 188 ~~~vR~~~~~~l~~i~~~~~~~~---~-----~~~l~~~l~~~l~-----d~--~~~vr~~a~~~l~~l~~~~~~~~--- 249 (521)
+...-..+++++..+......+. . ...++|.+.+... +. ++.+-..+...+..+...++.+.
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 55566667777777765543332 1 1126666666542 22 25666667777777777777653
Q ss_pred HHHhhhHHHHH------hccCCc--HHHHHHHHHHHHccccccChHHH---HHhHHHHHHHh-hcCCChHHHHHHHHHHH
Q 009975 250 AIQHILPCVKE------LSSDSS--QHVRSALASVIMGMAPLLGKDAT---IEQLLPIFLSL-LKDEFPDVRLNIISKLD 317 (521)
Q Consensus 250 ~~~~~~~~l~~------~~~d~~--~~vr~~~~~~l~~i~~~~~~~~~---~~~l~~~l~~~-l~d~~~~vr~~a~~~l~ 317 (521)
+.+.+...+.. +-.+.+ +.........+..+...+.++.. .+.++..+..+ .+..++..|..+++.++
T Consensus 136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la 215 (415)
T PF12460_consen 136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLA 215 (415)
T ss_pred HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 23333333320 000111 01111122222222222222221 22355555544 44456899999999999
Q ss_pred HhhhhhchhhHhhhHHHHHHHHh-cCCChHHHHHHHHHhHHHHhhh--ChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 009975 318 QVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLQDKVYSIRDAAANNL 394 (521)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 394 (521)
.+......+...+.++..+.... .......|...++.+..+.+.+ ..+.....+...+.+++.| +.+...+++++
T Consensus 216 ~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f 293 (415)
T PF12460_consen 216 SLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAF 293 (415)
T ss_pred HHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHH
Confidence 99888655443355555555544 4455566777777776666654 2223345567777788888 67788889998
Q ss_pred HHHHHHhCH---------------HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHh---hcHHHHHHhh
Q 009975 395 KRLAEEFGP---------------EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC---SRLLPVVINA 456 (521)
Q Consensus 395 ~~l~~~~~~---------------~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~---~~il~~l~~~ 456 (521)
+.+...... ..+...++|.+.+..++.+...|..++.++..+.++.+...+. +.++|.+++.
T Consensus 294 ~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqs 373 (415)
T PF12460_consen 294 GILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQS 373 (415)
T ss_pred hhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 888754211 1133567888888877777779999999999999988877653 6799999999
Q ss_pred cCCCCchHHHHHHHHHHHHHhhhchHHHH---hhHHHHHHH
Q 009975 457 SKDRVPNIKFNVAKVLQSLIPIVDQSMVE---KTIRPCLVE 494 (521)
Q Consensus 457 l~d~~~~VR~~a~~~l~~~~~~~~~~~~~---~~~~~~l~~ 494 (521)
++-+++.+|.++++++..+...- ++.+. +.+.|.|.+
T Consensus 374 L~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 374 LSLPDADVLLSSLETLKMILEEA-PELISEHLSSLIPRLLK 413 (415)
T ss_pred hCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHh
Confidence 99999999999999999998764 33333 344554443
No 78
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.85 E-value=4e-06 Score=83.42 Aligned_cols=168 Identities=18% Similarity=0.192 Sum_probs=126.1
Q ss_pred hcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC
Q 009975 145 TQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR 224 (521)
Q Consensus 145 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~ 224 (521)
+.+.++..|..|++-+-.... .......++|-+.+.....+.++|+-+.-.+..+++..+... -..++.+++-++
T Consensus 28 l~s~n~~~kidAmK~iIa~M~---~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--lLavNti~kDl~ 102 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMS---LGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--LLAVNTIQKDLQ 102 (757)
T ss_pred ccccChHHHHHHHHHHHHHHh---cCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHhhcc
Confidence 555666667666654433222 122356677777777778899999999888887776544222 235677888899
Q ss_pred CChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHh-HHHHHHHhhcC
Q 009975 225 DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ-LLPIFLSLLKD 303 (521)
Q Consensus 225 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~-l~~~l~~~l~d 303 (521)
|+++.+|..|+..++.+ +...+.+.+++.++++++|+++.||..|+-++..+.+. +++...+. ....+..++.|
T Consensus 103 d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g~~~~l~~l~~D 177 (757)
T COG5096 103 DPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELGLIDILKELVAD 177 (757)
T ss_pred CCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcccHHHHHHHHhhC
Confidence 99999999999988775 44566788999999999999999999999999887643 33333444 66777788899
Q ss_pred CChHHHHHHHHHHHHhhhh
Q 009975 304 EFPDVRLNIISKLDQVNQV 322 (521)
Q Consensus 304 ~~~~vr~~a~~~l~~~~~~ 322 (521)
++|.|..+|+.++..+...
T Consensus 178 ~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 178 SDPIVIANALASLAEIDPE 196 (757)
T ss_pred CCchHHHHHHHHHHHhchh
Confidence 9999999999999988765
No 79
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.85 E-value=1.4e-05 Score=77.23 Aligned_cols=278 Identities=13% Similarity=0.110 Sum_probs=165.8
Q ss_pred hHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhc----------CCC--hhHHHHHHHHHHHHhhhcChhhh---hhh
Q 009975 111 PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ----------DDQ--DSVRLLAVEGCAALGKLLEPQDC---VAH 175 (521)
Q Consensus 111 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~----------d~~--~~vr~~a~~~l~~l~~~~~~~~~---~~~ 175 (521)
+.+=..+...++.+++.++.+..... +..+..+.. +.. .......+-.+..+...++++.. ...
T Consensus 111 ~~~L~~~~~l~~~iv~~l~~~~q~~~-~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ 189 (415)
T PF12460_consen 111 DRVLELLSRLINLIVRSLSPEKQQEI-LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEE 189 (415)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHH
Confidence 56667777777777777775544333 333222221 111 01122233334444444444322 222
Q ss_pred hHHHHHHh-cCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc-CCChHHHHHHHHHhHHHHHhhh--CHHHHH
Q 009975 176 ILPVIVNF-SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRIL--NPELAI 251 (521)
Q Consensus 176 l~~~l~~~-~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~--~~~~~~ 251 (521)
++..+..+ ....++..|..+++.++.++..++.+.....++..+.... ...+...|..++..+..+.+.+ ......
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~ 269 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA 269 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence 44444443 4456688999999999988887655544445555555544 4455667777777777766654 111223
Q ss_pred HhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhh
Q 009975 252 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 331 (521)
Q Consensus 252 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 331 (521)
..+...+.+++.| +.+...++++++.+..-.+ ..... ... ...+.+-++.+...
T Consensus 270 ~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~--~~l~~----------~~~------------a~vklLykQR~F~~ 323 (415)
T PF12460_consen 270 TELLDKLLELLSS--PELGQQAAKAFGILLSDSD--DVLNK----------ENH------------ANVKLLYKQRFFTQ 323 (415)
T ss_pred HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcH--HhcCc----------ccc------------chhhhHHhHHHHHH
Confidence 3455666666666 5566777777766652211 00000 111 11222333455678
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhH---HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHH---
Q 009975 332 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--- 405 (521)
Q Consensus 332 ~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--- 405 (521)
++|.+.+..++.+...|...+.++..+.++++.+.+. +.++|++++.+.-++.+++.+++.++..+...- ++.
T Consensus 324 ~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~ 402 (415)
T PF12460_consen 324 VLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISE 402 (415)
T ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHH
Confidence 8888888777766668889999999999999887554 568999999999899999999999998888654 221
Q ss_pred HHhhhHHHHHh
Q 009975 406 AMQHITPQVLE 416 (521)
Q Consensus 406 ~~~~l~~~l~~ 416 (521)
..+.++|.+.+
T Consensus 403 hl~sLI~~LL~ 413 (415)
T PF12460_consen 403 HLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHh
Confidence 23455555543
No 80
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=98.83 E-value=2.1e-05 Score=78.30 Aligned_cols=478 Identities=15% Similarity=0.114 Sum_probs=243.1
Q ss_pred hhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChH-HHHHH
Q 009975 20 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTEL 98 (521)
Q Consensus 20 ~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-~~~~l 98 (521)
.+..++...+-|+-+.||..|+..+.++.+-.+...- ..++..+.+-..|+.+.++.+.-.++.....-++.+ ....+
T Consensus 472 ~~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~~-~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~ 550 (1529)
T KOG0413|consen 472 VLYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHREA-FSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDL 550 (1529)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccch-HHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhh
Confidence 4666777778899999999999999988887654322 234444444444566777766655554433222222 11111
Q ss_pred HHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhc-CCChhHHHHHHHHHHHHhhhcChhhhhhhhH
Q 009975 99 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQDCVAHIL 177 (521)
Q Consensus 99 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 177 (521)
+.--.+...|.. +.+... ++-.+...++..+.+-.+ |+...+|..|+..+.....+...+...+..+
T Consensus 551 l~~~~~ii~d~~-----------~~~~~~-ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L 618 (1529)
T KOG0413|consen 551 LLDEQQIIQDFK-----------LKLMNK-GETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVL 618 (1529)
T ss_pred cCcchhhhhhcc-----------hhhhhc-cccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHH
Confidence 111111222211 111111 122345566666666555 7778899999999988888776665566678
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCc-cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh-----CHHHHH
Q 009975 178 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-----NPELAI 251 (521)
Q Consensus 178 ~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-----~~~~~~ 251 (521)
-++..+|.|+-..||..++..++++...-+.-. ....-+-.++..+.|.+..|...|...+..+..-+ +-.++.
T Consensus 619 ~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p~~~~~~dlaW~L 698 (1529)
T KOG0413|consen 619 SILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTPLLENSSDLAWTL 698 (1529)
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhcccCCchHHHH
Confidence 888999999999999999999988764322111 01222344555666777777777766544433221 100100
Q ss_pred ------------------------H----hhhHHHHHh----ccCCcHHHHHHHHHHHHc--cccc-cC------hHH--
Q 009975 252 ------------------------Q----HILPCVKEL----SSDSSQHVRSALASVIMG--MAPL-LG------KDA-- 288 (521)
Q Consensus 252 ------------------------~----~~~~~l~~~----~~d~~~~vr~~~~~~l~~--i~~~-~~------~~~-- 288 (521)
+ .++....+. ..++.|.+-..++-...+ ++.. +. .+.
T Consensus 699 L~~i~~~~~~s~yl~~~~h~w~~~~k~~~t~~d~~~~hsG~E~~~~aWm~~s~~~~q~~~~d~S~~~~s~~~~s~~~N~~ 778 (1529)
T KOG0413|consen 699 LDTIESVTNHSQYLMSTLHDWVREKKVKRTVMDSMKQHSGSEKLDGAWMVFSQLCVQFEQVDFSIETFSRVDLSRESNLV 778 (1529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccCcccCcchHHHHHHHHhcccccceeeecccccccchhhhHH
Confidence 0 011111111 112335443322211111 0000 00 011
Q ss_pred -HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc----------------h-------------hhHh----hhHHH
Q 009975 289 -TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG----------------I-------------DLLS----QSLLP 334 (521)
Q Consensus 289 -~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~----------------~-------------~~~~----~~~~~ 334 (521)
+..+++..+-..-+|-....+.....++...++.-+ . +.+. ..+.+
T Consensus 779 ~~L~hI~~~i~~i~~~l~s~~vd~~~~a~K~~Ck~~~~~~s~e~~~~~~d~i~~~sl~~~e~~~~~iE~l~~~c~d~i~~ 858 (1529)
T KOG0413|consen 779 QYLIHIIENIKKIDDDLKSDLVDTLQGAFKDYCKHPSSRSSYECLGKLMDGIGDRSLHGKEFSDFGIETLLIKCFDTIVQ 858 (1529)
T ss_pred HHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHhhcccCchHHHhhHHHhccceehh
Confidence 111111111112112222233333333332222211 0 0000 01111
Q ss_pred HHHHHhcCCChHH------H---HHHHHHhHHHHhhhChhhhHHHHHHHHHHHc----CCC-------------------
Q 009975 335 AIVELAEDRHWRV------R---LAIIEYIPLLASQLGVGFFDDKLGALCMQWL----QDK------------------- 382 (521)
Q Consensus 335 ~l~~~~~~~~~~v------r---~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~d~------------------- 382 (521)
.+..+....-|.. | ....-.++.....++.. -..+.++++.+.. .|.
T Consensus 859 ~~~~~~~~~~~~~~s~~~~~~l~~~y~v~~~~~~ql~P~a-r~~K~~~lLv~s~~~gssDa~htp~tq~se~p~sqp~~~ 937 (1529)
T KOG0413|consen 859 SFEMFKDKDEWKRNSESQERLLCTAYNVAFSYSPQLVPHA-RLGKTLSLLVNSTENGSSDAPHTPPTQLSEVPSSQPSSK 937 (1529)
T ss_pred HHhhhhhhHHHhhcchhHHHHHHHHhhccccccceeccch-hccceeeeeeeeeccCCCCCCCCCccchhhCcccCCCcc
Confidence 1111111001110 0 00000011111111100 0112222222211 121
Q ss_pred ------cHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHh
Q 009975 383 ------VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVIN 455 (521)
Q Consensus 383 ------~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~ 455 (521)
.+.+|..+.-.++.++-.- +...+..+|.+.+-++ +..-.+|...+-+++.++..+.. ..+..+|.+-.
T Consensus 938 v~g~~~~~~vra~~vvTlakmcLah--~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa--m~d~YiP~I~~ 1013 (1529)
T KOG0413|consen 938 VEGAMFSDKVRAVGVVTLAKMCLAH--DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA--MTDRYIPMIAA 1013 (1529)
T ss_pred ccccccchHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH--HHHHhhHHHHH
Confidence 2346777777888877543 3356678888887554 45678888888888888764432 24678899999
Q ss_pred hcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975 456 ASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 456 ~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~ 516 (521)
.|.|+.+-||..++..|..+.+.--..+-...++.++.. +-|..++||..|.-.++.+.+
T Consensus 1014 ~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~-l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQFGIVKWNGELFIRFMLA-LLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHH-HcccCHHHHHHHHHHHHHHHh
Confidence 999999999999999999988752222333444455444 368899999999988887754
No 81
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.82 E-value=5.4e-07 Score=87.27 Aligned_cols=236 Identities=17% Similarity=0.285 Sum_probs=175.7
Q ss_pred CcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhc-CC
Q 009975 265 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DR 343 (521)
Q Consensus 265 ~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 343 (521)
++..-+....+.+..+.+.++.......++|.+...+.+. ...-..+-.+-.+.+......+...++|.+....+ ..
T Consensus 285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~ 362 (700)
T KOG2137|consen 285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD 362 (700)
T ss_pred cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccc--cccccccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence 3444567888889999999999998999999998888543 12122222223333434444455788888888766 56
Q ss_pred ChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhh-hcCcc
Q 009975 344 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM-INNPH 422 (521)
Q Consensus 344 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~~~~ 422 (521)
+.+++..+++.++.+.+....+.+.++++|++...++|.+..++..++..+..+.+.+...+..+.++|.+... ++..+
T Consensus 363 ~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~ 442 (700)
T KOG2137|consen 363 PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN 442 (700)
T ss_pred cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence 67788889999999999999999999999999999999999999999999999999988888889999999885 66778
Q ss_pred hHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh-c-hHHHHhhHHHHHHHhcCCCC
Q 009975 423 YLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV-D-QSMVEKTIRPCLVELTEDPD 500 (521)
Q Consensus 423 ~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~-~-~~~~~~~~~~~l~~l~~D~~ 500 (521)
..++..++-+++.+++.+....+.+.++|++.. .+-.++.+..........+.-.. + .+.....++|.+..+...+.
T Consensus 443 ~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~-~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 443 LYVKVNVLPCLAGLIQRLDKAAVLDELLPILKC-IKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 999999999999999877766666666665544 44445666666666665544322 2 35556788888887655444
Q ss_pred ccH
Q 009975 501 VDV 503 (521)
Q Consensus 501 ~~v 503 (521)
-++
T Consensus 522 L~~ 524 (700)
T KOG2137|consen 522 LNG 524 (700)
T ss_pred ccH
Confidence 333
No 82
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=6e-05 Score=69.98 Aligned_cols=258 Identities=16% Similarity=0.113 Sum_probs=161.5
Q ss_pred HhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHH--HHh-HHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhH
Q 009975 252 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT--IEQ-LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 328 (521)
Q Consensus 252 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~--~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 328 (521)
..++..+..-..|++..+|..++.+++..+...+.+.. ... +..++..++.+.+.+|...++.+|..+.+......+
T Consensus 257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l 336 (533)
T KOG2032|consen 257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL 336 (533)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence 33455556667899999999999999999987665432 223 344556667777899999999999998877655444
Q ss_pred hhhHHH---HHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hhhHHHHHH---HHHHHcCCCcHHHHHHHHHHHHHHHH
Q 009975 329 SQSLLP---AIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGA---LCMQWLQDKVYSIRDAAANNLKRLAE 399 (521)
Q Consensus 329 ~~~~~~---~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~---~l~~~l~d~~~~vr~~a~~~l~~l~~ 399 (521)
...+++ .+..+..+.+..+|.++...++.+++..|. +.|.+.+.. .+.-.++|+++.|-.++-.. ..
T Consensus 337 ~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~----~~ 412 (533)
T KOG2032|consen 337 ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSE----LR 412 (533)
T ss_pred hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHH----HH
Confidence 344444 445677899999999999999999988875 344443332 22334689999875543333 33
Q ss_pred HhCHHHHHhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 009975 400 EFGPEWAMQHITPQVLEMINNPH-YLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 478 (521)
Q Consensus 400 ~~~~~~~~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~ 478 (521)
..++....+.+-..+.+.+ +.. .+.+.-.-.++..+..... + ....+.......++..-+.||.++..--+....+
T Consensus 413 ~c~p~l~rke~~~~~q~~l-d~~~~~~q~Fyn~~c~~L~~i~~-d-~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~ 489 (533)
T KOG2032|consen 413 TCYPNLVRKELYHLFQESL-DTDMARFQAFYNQWCIQLNHIHP-D-ILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDS 489 (533)
T ss_pred hcCchhHHHHHHHHHhhhh-HHhHHHHHHHHHHHHHHHhhhCH-H-HHHHHHHhchhheecchHHHHHHHHHHHHHHHHH
Confidence 3343333333333333333 222 1222222222222222111 1 1222333334445555558888887777776666
Q ss_pred hchHH----HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975 479 VDQSM----VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 479 ~~~~~----~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~ 516 (521)
+.++. ....+...+..+..|+-++|+..+.+|++.+..
T Consensus 490 l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 490 LVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred hHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 55442 236677788889999999999999999998765
No 83
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=0.0001 Score=72.54 Aligned_cols=456 Identities=15% Similarity=0.133 Sum_probs=243.5
Q ss_pred hhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCC-CCcchhhhhhhhhhhcC-----------
Q 009975 21 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYP----------- 88 (521)
Q Consensus 21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~-~~~~r~~~~~~~~~~~~----------- 88 (521)
+...|.+-+ ++|+.+|..+.++|......-+ +-+.++.-..+++ +...|.+|...+....+
T Consensus 7 l~~~l~qTl-~pdps~rk~aEr~L~~~e~q~~------y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~ 79 (960)
T KOG1992|consen 7 LANYLLQTL-SPDPSVRKPAERALRSLEGQQN------YPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPI 79 (960)
T ss_pred HHHHHHhcC-CCCCccCchHHHHHHHhccCCC------chHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCcc
Confidence 344444433 4789999999999988766522 2222222222322 45677776655544332
Q ss_pred CCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcC
Q 009975 89 SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE 168 (521)
Q Consensus 89 ~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 168 (521)
.+.+..+..+...+..+.-+....++....+++.-+++. .-+..|+.++|.+..-.+..+..+-.+...+-..+.+.+.
T Consensus 80 ~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~-DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R 158 (960)
T KOG1992|consen 80 KIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKR-DFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYR 158 (960)
T ss_pred ccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcc-ccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcC
Confidence 122335677788888887777788999988888887753 2245789999998888887777666666666666666654
Q ss_pred hhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc--CCChHH-------HHHHHHHhHH
Q 009975 169 PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL--RDNEAE-------VRIAAAGKVT 239 (521)
Q Consensus 169 ~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l--~d~~~~-------vr~~a~~~l~ 239 (521)
.+-..+.+.--+.. ++..++..+ ..++....++. .+++.. +....++.+.
T Consensus 159 ~efrSdaL~~EIK~---------------vLd~f~~Pl------t~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfy 217 (960)
T KOG1992|consen 159 PEFRSDALWLEIKL---------------VLDRFAEPL------TDLFRKTMELIQRHANDAAALNILFGVLLLICKLFY 217 (960)
T ss_pred cccccHHHHHHHHH---------------HHHhhHhHH------HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Confidence 43111111111111 111111100 00111111111 011111 0011111111
Q ss_pred HHHhh-hCH--HHHHHhhhHHHHHhccCCc-------------HHHHHHHHHHHHccccccChHH--HHHhHHHHHHHhh
Q 009975 240 KFCRI-LNP--ELAIQHILPCVKELSSDSS-------------QHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLL 301 (521)
Q Consensus 240 ~l~~~-~~~--~~~~~~~~~~l~~~~~d~~-------------~~vr~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l 301 (521)
.+... +++ ++-.+..++.+.+++...+ ..+|...++.+.-.+....++. +..+++...-.++
T Consensus 218 sLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL 297 (960)
T KOG1992|consen 218 SLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLL 297 (960)
T ss_pred hhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHH
Confidence 11000 010 1123344555555443111 2567777777766655444432 1223333333445
Q ss_pred cCCCh-----HHHHHHHHHHHHhhhhhchhhH--hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHH
Q 009975 302 KDEFP-----DVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL 374 (521)
Q Consensus 302 ~d~~~-----~vr~~a~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 374 (521)
.+-.+ ....+|++.|..+++.-....+ .+.++..+.+..-=++...|..- .+.|.+.-+..
T Consensus 298 ~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eD------------eElFED~pleY 365 (960)
T KOG1992|consen 298 VSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREED------------EELFEDNPLEY 365 (960)
T ss_pred HhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhh------------HHHhccCHHHH
Confidence 44433 3345555666665543211100 12333333333333333333322 22233333444
Q ss_pred HHHHcCCCcHH-HHHHHHHHHHHHHHHhCHHH---HHhhhHHHHHhhhcC--cchHHHHHHHHHHHHhhccc-----C--
Q 009975 375 CMQWLQDKVYS-IRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVM-----G-- 441 (521)
Q Consensus 375 l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~-----~-- 441 (521)
+-+.++-.+-+ =|++|+..++.+++.+.... +...+-..+.++.++ .||..+..++..+.+++-.. |
T Consensus 366 iRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvt 445 (960)
T KOG1992|consen 366 IRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVT 445 (960)
T ss_pred HHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhccee
Confidence 44555544444 46788899999998874321 111111222233444 47999999999999988532 1
Q ss_pred --------hHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 009975 442 --------SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQS 513 (521)
Q Consensus 442 --------~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~ 513 (521)
.++|...++|.+.+--..+.|-+|-.+++-+..+-..++++.. -.++|.+.+.+.-+...|...|+.+++.
T Consensus 446 stn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~l-m~~~p~li~~L~a~s~vvhsYAA~aiEk 524 (960)
T KOG1992|consen 446 STNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHL-MALLPRLIRFLEAESRVVHSYAAIAIEK 524 (960)
T ss_pred eccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHH-HHHHHHHHHhccCcchHHHHHHHHHHHh
Confidence 2456677788777755567888888888877777677666554 5678888888888899999999999998
Q ss_pred HHHhh
Q 009975 514 IDHVM 518 (521)
Q Consensus 514 l~~~~ 518 (521)
+-...
T Consensus 525 il~vr 529 (960)
T KOG1992|consen 525 LLTVR 529 (960)
T ss_pred ccccc
Confidence 76543
No 84
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=0.00011 Score=71.56 Aligned_cols=354 Identities=11% Similarity=0.100 Sum_probs=206.4
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHH
Q 009975 139 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA 218 (521)
Q Consensus 139 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~ 218 (521)
..+.+=++.+++.+|....+.+..+- ..+....++|.+...+++.++.||+.|.-++..|-+.+..- .++.-..
T Consensus 102 na~RkDLQHPNEyiRG~TLRFLckLk----E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L--~pDapeL 175 (948)
T KOG1058|consen 102 NAYRKDLQHPNEYIRGSTLRFLCKLK----EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHL--IPDAPEL 175 (948)
T ss_pred HHHhhhccCchHhhcchhhhhhhhcC----cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhh--cCChHHH
Confidence 34445567789999998888777653 33466779999999999999999999999998887653221 1222233
Q ss_pred HHHhc-CCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHH
Q 009975 219 YVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF 297 (521)
Q Consensus 219 l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l 297 (521)
+..++ .+.++..+..|.-.|.. .+++...+++...+.+ ..+-+.......++.+...+..-+ ......+..+
T Consensus 176 i~~fL~~e~DpsCkRNAFi~L~~----~D~ErAl~Yl~~~idq-i~~~~~~LqlViVE~Irkv~~~~p--~~~~~~i~~i 248 (948)
T KOG1058|consen 176 IESFLLTEQDPSCKRNAFLMLFT----TDPERALNYLLSNIDQ-IPSFNDSLQLVIVELIRKVCLANP--AEKARYIRCI 248 (948)
T ss_pred HHHHHHhccCchhHHHHHHHHHh----cCHHHHHHHHHhhHhh-ccCccHHHHHHHHHHHHHHHhcCH--HHhhHHHHHH
Confidence 33332 45566777766654433 3444433333333322 223334455556666655543111 1234567788
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHh-cCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHH
Q 009975 298 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM 376 (521)
Q Consensus 298 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 376 (521)
..++...++.|+-.|+.++-.+... +..+ ...-..+.+++ +.++-.++.-.+.-+..+. . +.+...+.+.--++
T Consensus 249 ~~lL~stssaV~fEaa~tlv~lS~~--p~al-k~Aa~~~i~l~~kesdnnvklIvldrl~~l~-~-~~~~il~~l~mDvL 323 (948)
T KOG1058|consen 249 YNLLSSTSSAVIFEAAGTLVTLSND--PTAL-KAAASTYIDLLVKESDNNVKLIVLDRLSELK-A-LHEKILQGLIMDVL 323 (948)
T ss_pred HHHHhcCCchhhhhhcceEEEccCC--HHHH-HHHHHHHHHHHHhccCcchhhhhHHHHHHHh-h-hhHHHHHHHHHHHH
Confidence 8888888999988877776655432 1111 22233344433 2233344444444444444 1 22222333444556
Q ss_pred HHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhh---hcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHH
Q 009975 377 QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM---INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV 453 (521)
Q Consensus 377 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~---l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l 453 (521)
..+..++-+||..++...-.++..-..+.+...+-..+.+. -.+.+-..|+..+.++..++-.++. +...++|.+
T Consensus 324 rvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~l 401 (948)
T KOG1058|consen 324 RVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLL 401 (948)
T ss_pred HHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHH
Confidence 78899999999998887666655443332222222223222 1345667899999999888875553 457789999
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 009975 454 INASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 515 (521)
Q Consensus 454 ~~~l~d~~~~VR~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~ 515 (521)
+..+.|.++.--...+..+....+.++.= .....++.. +-.=+...+-+.|.|-+++-+
T Consensus 402 l~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~---~~~irS~ki~rgalwi~GeYc 462 (948)
T KOG1058|consen 402 LDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLET---FPQIRSSKICRGALWILGEYC 462 (948)
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHh---hhhhcccccchhHHHHHHHHH
Confidence 99999998876666666666666655421 111222222 223345555666666665433
No 85
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.77 E-value=1.1e-07 Score=69.68 Aligned_cols=83 Identities=22% Similarity=0.346 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhhcccChH--HHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHH--HhhHHHHHHHhcCCCCc
Q 009975 426 RMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV--EKTIRPCLVELTEDPDV 501 (521)
Q Consensus 426 r~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~--~~~~~~~l~~l~~D~~~ 501 (521)
|.+++.++..++..++.. .+.+.++|.++.++.|+++.||..|+++|..+.+....+.. ...+++.|.++..|+|+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 667777777777666654 35688899999999999999999999999999887765543 37788888899999999
Q ss_pred cHHHHHH
Q 009975 502 DVRFFAT 508 (521)
Q Consensus 502 ~vr~~a~ 508 (521)
+||..|.
T Consensus 83 ~Vr~~a~ 89 (97)
T PF12755_consen 83 NVRSAAE 89 (97)
T ss_pred hHHHHHH
Confidence 9988773
No 86
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=4.2e-05 Score=74.40 Aligned_cols=213 Identities=14% Similarity=0.140 Sum_probs=122.7
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccC-CcHHHHHHHHHHHHccccccChHHHHH
Q 009975 213 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLGKDATIE 291 (521)
Q Consensus 213 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~i~~~~~~~~~~~ 291 (521)
...+..+.+++...++.|+..|..++..+... +.. ....-..+.+++.+ ++-.++.....-+..+. -+.+...+
T Consensus 242 ~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~--p~a-lk~Aa~~~i~l~~kesdnnvklIvldrl~~l~--~~~~~il~ 316 (948)
T KOG1058|consen 242 ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND--PTA-LKAAASTYIDLLVKESDNNVKLIVLDRLSELK--ALHEKILQ 316 (948)
T ss_pred hHHHHHHHHHHhcCCchhhhhhcceEEEccCC--HHH-HHHHHHHHHHHHHhccCcchhhhhHHHHHHHh--hhhHHHHH
Confidence 34566666677666777776666555544331 221 12222222333221 22234444444444443 12233455
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHh-------cCCChHHHHHHHHHhHHHHhhhCh
Q 009975 292 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-------EDRHWRVRLAIIEYIPLLASQLGV 364 (521)
Q Consensus 292 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~vr~~~~~~l~~l~~~~~~ 364 (521)
.++--++..+..++-+||..++...-.+...-.. +.++..+..-+ .+.+...|...++.++..+-.++.
T Consensus 317 ~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNv----ediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~ 392 (948)
T KOG1058|consen 317 GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNV----EDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE 392 (948)
T ss_pred HHHHHHHHHcCcccccHHHHHHHHHHhhhhhccH----HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH
Confidence 5666677888999999999998877666654332 33444443311 345667899999999988877664
Q ss_pred hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhh-cCcchHHHHHHHHHHHHhhc
Q 009975 365 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NNPHYLYRMTILRAISLLAP 438 (521)
Q Consensus 365 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~~a~~~l~~l~~ 438 (521)
+...++|.++..+.|.++..-...+..+....+.+.. ....++..+.+.+ .-....+-..+++.+|.-+.
T Consensus 393 --~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~--Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 393 --VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN--LRASIIEKLLETFPQIRSSKICRGALWILGEYCE 463 (948)
T ss_pred --HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch--HHHHHHHHHHHhhhhhcccccchhHHHHHHHHHh
Confidence 3577999999999999998777777777777766542 2223333333322 11223333456666665554
No 87
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.73 E-value=5e-05 Score=76.34 Aligned_cols=354 Identities=15% Similarity=0.174 Sum_probs=215.8
Q ss_pred HHHHHHHHHhhhcChh--hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC--CCccccchHHHHHHhcCCChHHH
Q 009975 155 LAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRLLRDNEAEV 230 (521)
Q Consensus 155 ~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~--~~~~~~~l~~~l~~~l~d~~~~v 230 (521)
.+..+|.++++...-+ .....+++.+.+.++..+..+...++..+.+++-... .......+++.+.+++..++..+
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l 347 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDL 347 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHH
Confidence 5567788888775432 3456688999999998998888888888877763211 22334679999999999988899
Q ss_pred HHHHHHhHHHHHhhhCH--HHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh--HHHHHhHHHHHHHhhc-CCC
Q 009975 231 RIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLK-DEF 305 (521)
Q Consensus 231 r~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~~l~-d~~ 305 (521)
+..++..|..++..-.. ......++|.+..++.+++ .+..+...+..++..-.. .....+.+|.+.+++- .++
T Consensus 348 ~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~ 425 (708)
T PF05804_consen 348 VNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSE 425 (708)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCC
Confidence 99999999887664322 1233447888999998775 445566667766642111 1223456788777654 355
Q ss_pred hHHHHHHHHHHHHhhhhhch-hh-HhhhHHHHHHHH-hcCCChHHHHHHHHHhHHHHhhhCh--hhhHHHHHHHHHHHcC
Q 009975 306 PDVRLNIISKLDQVNQVIGI-DL-LSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQ 380 (521)
Q Consensus 306 ~~vr~~a~~~l~~~~~~~~~-~~-~~~~~~~~l~~~-~~~~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~ 380 (521)
+++...++..+-.++..-.. +. ....-++.+.+. .+..+ ...++.+..++.+-|+ ..|.+++.|++-....
T Consensus 426 ~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~ 501 (708)
T PF05804_consen 426 EEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD----PLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSS 501 (708)
T ss_pred ccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc----HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhc
Confidence 55655444443333221110 00 012234444443 22222 2234455555555433 2344555555443333
Q ss_pred CCcHHHHHHHHHHHHHHHHHh--CHHH---H-HhhhHHHHHhhhcCc--chHHHHHHHHHHHHhhcc--cChHHHhhcHH
Q 009975 381 DKVYSIRDAAANNLKRLAEEF--GPEW---A-MQHITPQVLEMINNP--HYLYRMTILRAISLLAPV--MGSEITCSRLL 450 (521)
Q Consensus 381 d~~~~vr~~a~~~l~~l~~~~--~~~~---~-~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~--~~~~~~~~~il 450 (521)
..+. ...++++|.+.... +.+| . ...++|.+.+.+..+ ...+...++.++|.++.. +..-.....++
T Consensus 502 ~~~e---e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli 578 (708)
T PF05804_consen 502 GDSE---EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLI 578 (708)
T ss_pred CCcH---HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChH
Confidence 3344 34566666665432 2222 1 247899999988654 346777888888887742 11222345678
Q ss_pred HHHHhhcCCC--CchHHHHHHHHHHHHHhhhchH-HH--HhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 009975 451 PVVINASKDR--VPNIKFNVAKVLQSLIPIVDQS-MV--EKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 517 (521)
Q Consensus 451 ~~l~~~l~d~--~~~VR~~a~~~l~~~~~~~~~~-~~--~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~ 517 (521)
+.++.+++.. +.+.-.+.+.++..+..+-... .+ ...+...|..+++|++..||..+-.++.-+.+.
T Consensus 579 ~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 579 PTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 8888877654 3455566667777766553222 11 155777888899999999999999999887753
No 88
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.73 E-value=1.7e-05 Score=73.06 Aligned_cols=286 Identities=14% Similarity=0.146 Sum_probs=169.4
Q ss_pred HHHHHHHHHhHHHHHhhhCHH-HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHH----HH-HhHH-HHHHHh
Q 009975 228 AEVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA----TI-EQLL-PIFLSL 300 (521)
Q Consensus 228 ~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~----~~-~~l~-~~l~~~ 300 (521)
..+|..+...|..++.+++.- ...-++.-.+.....+..+.++..++.++..+....+.+. .. +... |....+
T Consensus 269 s~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~ 348 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMM 348 (728)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHH
Confidence 357888888888888887653 2223344445555677888888888888877765544211 11 1111 111222
Q ss_pred h---------cCCChHHHHHHHHHHHHhhhhhc--hhhHhhhHHHHHHHHhcC-CChHHHHHHHHHhHHHHhhhChh---
Q 009975 301 L---------KDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVG--- 365 (521)
Q Consensus 301 l---------~d~~~~vr~~a~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~--- 365 (521)
+ ....+.....++.++.++...-. -..-.....+.|..-..| ++.-+|.+++..+..+.-+-+..
T Consensus 349 l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~ 428 (728)
T KOG4535|consen 349 LNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDV 428 (728)
T ss_pred ccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhH
Confidence 2 12234445666666666644211 111113456666655544 45567777777766554443322
Q ss_pred hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC-----HHHHHhh----hHHHHHhh--hcC-cchHHHHHHHHHH
Q 009975 366 FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG-----PEWAMQH----ITPQVLEM--INN-PHYLYRMTILRAI 433 (521)
Q Consensus 366 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-----~~~~~~~----l~~~l~~~--l~~-~~~~~r~~a~~~l 433 (521)
.|...-...+...+.|....+|..++.+++.+...+- .+.+.+. ++..+... ..+ .++++|..+++++
T Consensus 429 ~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraL 508 (728)
T KOG4535|consen 429 IFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRAL 508 (728)
T ss_pred HHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 2233344556677888889999999999999887661 1112222 22222221 122 4689999999999
Q ss_pred HHhhcccChHH--HhhcHHHH-----HHhhcCCCCchHHHHHHHHHHHHHhhh----chHHHHhhHHHHHHHhcCC-CCc
Q 009975 434 SLLAPVMGSEI--TCSRLLPV-----VINASKDRVPNIKFNVAKVLQSLIPIV----DQSMVEKTIRPCLVELTED-PDV 501 (521)
Q Consensus 434 ~~l~~~~~~~~--~~~~il~~-----l~~~l~d~~~~VR~~a~~~l~~~~~~~----~~~~~~~~~~~~l~~l~~D-~~~ 501 (521)
+.+.+.+..-. ....++.. +..-.......||.+++.+++++.++- ........++|.|..|..| .+-
T Consensus 509 gnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NF 588 (728)
T KOG4535|consen 509 GNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNF 588 (728)
T ss_pred hhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccc
Confidence 99987544211 11122222 222233446789999999999998752 2344568888988887655 788
Q ss_pred cHHHHHHHHHHH
Q 009975 502 DVRFFATQAIQS 513 (521)
Q Consensus 502 ~vr~~a~~al~~ 513 (521)
.||..|+.++..
T Consensus 589 KVRi~AA~aL~v 600 (728)
T KOG4535|consen 589 KVRIRAAAALSV 600 (728)
T ss_pred eEeehhhhhhcC
Confidence 999999998864
No 89
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=9.5e-05 Score=68.69 Aligned_cols=254 Identities=15% Similarity=0.073 Sum_probs=150.2
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhh--hhhh-hHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcc
Q 009975 135 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD--CVAH-ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT 211 (521)
Q Consensus 135 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~-l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~ 211 (521)
..++..+..-..|++..+|..|+..|++.++..+.+. ..+. +..++..+.++.+..|...++.++..+.........
T Consensus 257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l 336 (533)
T KOG2032|consen 257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL 336 (533)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence 3344444555678888999999999999999976652 2223 444556677778888999999998888776665554
Q ss_pred ccchHHH---HHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhhhHH---HHHhccCCcHHHHHHHHHHHHcccc
Q 009975 212 RMDLVPA---YVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPC---VKELSSDSSQHVRSALASVIMGMAP 282 (521)
Q Consensus 212 ~~~l~~~---l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~---l~~~~~d~~~~vr~~~~~~l~~i~~ 282 (521)
.+.++++ +.++..|+++.+|.++...++.++...|.. .+.+.+... +.-.+.|+++.+-.++-..+....+
T Consensus 337 ~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p 416 (533)
T KOG2032|consen 337 ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYP 416 (533)
T ss_pred hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCc
Confidence 4444444 455778999999999999999999987542 333333322 2234588999876655444444333
Q ss_pred ccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHH----HhcCCChHHHHHHHHHhHHH
Q 009975 283 LLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE----LAEDRHWRVRLAIIEYIPLL 358 (521)
Q Consensus 283 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~vr~~~~~~l~~l 358 (521)
.++ .+.+-..+.+.+ |.+-. |-.+ ....++..+.+.. ..+.-.+.. +++...+.+|.++...-+.+
T Consensus 417 ~l~----rke~~~~~q~~l-d~~~~-~~q~--Fyn~~c~~L~~i~--~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~ 486 (533)
T KOG2032|consen 417 NLV----RKELYHLFQESL-DTDMA-RFQA--FYNQWCIQLNHIH--PDILMLLLTEDQHIFSSSWEQVREAAVLKTTRS 486 (533)
T ss_pred hhH----HHHHHHHHhhhh-HHhHH-HHHH--HHHHHHHHHhhhC--HHHHHHHHHhchhheecchHHHHHHHHHHHHHH
Confidence 333 333333444333 22111 1111 1111122111110 111111111 22333337888777766666
Q ss_pred HhhhChhh----hHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 009975 359 ASQLGVGF----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 398 (521)
Q Consensus 359 ~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 398 (521)
..++.+.. ....+...+-.+..|+-++|+..+.++++.+.
T Consensus 487 vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 487 VDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 55554432 22345556667788999999999998887764
No 90
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.67 E-value=8.2e-06 Score=69.32 Aligned_cols=221 Identities=19% Similarity=0.200 Sum_probs=142.7
Q ss_pred hHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCC--ChHHHHHHHHHHHHhhhhhchhhHhhhH
Q 009975 255 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGIDLLSQSL 332 (521)
Q Consensus 255 ~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 332 (521)
+..+.+...|.+.-.+...+.++++.. .++-+|.+...+.|. .+.||..|..+|+.+.. +..
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~--------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--------~~~ 101 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQ--------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--------PES 101 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhc--------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--------hhh
Confidence 344455556666667777777777765 456677777777654 57889999999988763 567
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHHHHhhh--Ch----hhhHH-------H--HHHHHHHHcCCCcHH--HHHHHHHHHH
Q 009975 333 LPAIVELAEDRHWRVRLAIIEYIPLLASQL--GV----GFFDD-------K--LGALCMQWLQDKVYS--IRDAAANNLK 395 (521)
Q Consensus 333 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~--~~----~~~~~-------~--l~~~l~~~l~d~~~~--vr~~a~~~l~ 395 (521)
.+.+.++.+|+...||..+..++..+--.- +. ..+.+ . -++-+-..+.|.+.. -|..|+-.|.
T Consensus 102 ~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LR 181 (289)
T KOG0567|consen 102 LEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLR 181 (289)
T ss_pred HHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhh
Confidence 788888888888888887655554442111 11 01100 0 011111111221111 0111211111
Q ss_pred HHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCC--CchHHHHHHHHHH
Q 009975 396 RLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR--VPNIKFNVAKVLQ 473 (521)
Q Consensus 396 ~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~--~~~VR~~a~~~l~ 473 (521)
..| .+.-+..+.+.+.+++.-.|..+..++|.+-. +.-+|.+.+.|.|. ++-||-.|+++|+
T Consensus 182 ----n~g----~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALG 245 (289)
T KOG0567|consen 182 ----NIG----TEEAINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALG 245 (289)
T ss_pred ----ccC----cHHHHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 112 13455667777788888999999999988864 34566777776664 7889999999999
Q ss_pred HHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 009975 474 SLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 515 (521)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~ 515 (521)
.++. +..++.|+++++|+++-||..+.-++..+.
T Consensus 246 aIa~--------e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 246 AIAD--------EDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred hhcC--------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 9885 577889999999999999999998887654
No 91
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.64 E-value=7.4e-05 Score=75.18 Aligned_cols=360 Identities=15% Similarity=0.141 Sum_probs=208.3
Q ss_pred CChHHHHHHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh--hhhhhhhHHHHHHhc
Q 009975 109 DMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFS 184 (521)
Q Consensus 109 ~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~ 184 (521)
.+...| .+...|.+++....- .-....+++.+.++++.++..+...++.+|..++-+-.. ......+++.+.+++
T Consensus 262 QeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 262 QEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHh
Confidence 333344 444556666644322 224556788888888888888999898888888755322 223456889999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHh--CCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH-HH-HHhhhHHHHH
Q 009975 185 QDKSWRVRYMVANQLYELCEAV--GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-LA-IQHILPCVKE 260 (521)
Q Consensus 185 ~d~~~~vR~~~~~~l~~i~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~-~~~~~~~l~~ 260 (521)
..++...+..+...|..++..- ........++|.+..++.|++ .+..++..|..++..-... .+ ....+|.+.+
T Consensus 341 ~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~ 418 (708)
T PF05804_consen 341 PSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQ 418 (708)
T ss_pred cCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHH
Confidence 9999999999999888876321 123344678999999998864 5566777777665532111 11 1235666655
Q ss_pred hc-cCCcHHHHHHHHHHHHccccccChH-HH-HHhHHHHHHHh-hcCCChHHHHHHHHHHHHhhhhhchhh-HhhhHHHH
Q 009975 261 LS-SDSSQHVRSALASVIMGMAPLLGKD-AT-IEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDL-LSQSLLPA 335 (521)
Q Consensus 261 ~~-~d~~~~vr~~~~~~l~~i~~~~~~~-~~-~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~~~~~~~~~~-~~~~~~~~ 335 (521)
++ ..++..+...++..+.+++..-... .. ...-++.++.. ++..+ .+-. ..+-.+...-|+.. .....+..
T Consensus 419 ~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D-~lLl---KlIRNiS~h~~~~k~~f~~~i~~ 494 (708)
T PF05804_consen 419 MLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD-PLLL---KLIRNISQHDGPLKELFVDFIGD 494 (708)
T ss_pred HHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc-HHHH---HHHHHHHhcCchHHHHHHHHHHH
Confidence 44 4455666655555555554322111 11 11223433333 23222 2222 22233333322111 11222333
Q ss_pred HHHHhcC-CChHHHHHHHHHhHHHHhhhCh----hhhH--HHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHhC--HH
Q 009975 336 IVELAED-RHWRVRLAIIEYIPLLASQLGV----GFFD--DKLGALCMQWLQDK--VYSIRDAAANNLKRLAEEFG--PE 404 (521)
Q Consensus 336 l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~----~~~~--~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~--~~ 404 (521)
+...+.. .++. ..+++++.++..--+ ..+. ..++|.+...+... .+++...++..+|.++..-. .-
T Consensus 495 L~~~v~~~~~ee---~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~l 571 (708)
T PF05804_consen 495 LAKIVSSGDSEE---FVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPL 571 (708)
T ss_pred HHHHhhcCCcHH---HHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHH
Confidence 3333333 3443 455555555543211 1122 24788888888653 44677777777787764221 11
Q ss_pred HHHhhhHHHHHhhhcCc--chHHHHHHHHHHHHhhcccCh-HHH--hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 009975 405 WAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGS-EIT--CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 478 (521)
Q Consensus 405 ~~~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~~~~-~~~--~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~ 478 (521)
.....+++.+.++++.. +...-...+.++..+..+-.. +.+ ...+..+++.++.|+++.||..+-.+|..++..
T Consensus 572 L~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 572 LAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 22456788888877654 345555666777777654222 222 246788999999999999999999999998764
No 92
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.62 E-value=4.6e-06 Score=81.04 Aligned_cols=234 Identities=15% Similarity=0.217 Sum_probs=177.9
Q ss_pred HHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhc-CCCh
Q 009975 228 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFP 306 (521)
Q Consensus 228 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~-d~~~ 306 (521)
+.-+..-.+.|..+...++...+...++|.+...+.+.. ..-...-.+..|+.......+...++|.+...++ ....
T Consensus 287 n~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~ 364 (700)
T KOG2137|consen 287 NSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTK--MVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPK 364 (700)
T ss_pred cHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcccc--ccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCcc
Confidence 455566777788888888888888899999988774321 2222233334455555666667788999988887 5567
Q ss_pred HHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHH-cCCCcHH
Q 009975 307 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LQDKVYS 385 (521)
Q Consensus 307 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~ 385 (521)
+++...++.+..+.+.+.++.+.+.++|.+....++.+..++..++..++.+++.+......+.++|.+.++ ++..+..
T Consensus 365 ~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~ 444 (700)
T KOG2137|consen 365 QALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLY 444 (700)
T ss_pred cchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchH
Confidence 888889999999999999999999999999999999999999999999999999999888889999999765 6778999
Q ss_pred HHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhc--ccChHHHhhcHHHHHHhhcCCCCch
Q 009975 386 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP--VMGSEITCSRLLPVVINASKDRVPN 463 (521)
Q Consensus 386 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~--~~~~~~~~~~il~~l~~~l~d~~~~ 463 (521)
|+..++-|++.+++.+......+.+.|.+. ..+.+++.+-...+.+...+.- ..|.+...+.++|.++.+...+.-.
T Consensus 445 vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~-~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~ 523 (700)
T KOG2137|consen 445 VKVNVLPCLAGLIQRLDKAAVLDELLPILK-CIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLN 523 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccccc
Confidence 999999999999977755444555555444 4455666666666666666553 2233556688899988887766544
Q ss_pred H
Q 009975 464 I 464 (521)
Q Consensus 464 V 464 (521)
+
T Consensus 524 ~ 524 (700)
T KOG2137|consen 524 G 524 (700)
T ss_pred H
Confidence 3
No 93
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.62 E-value=4.9e-07 Score=66.22 Aligned_cols=89 Identities=17% Similarity=0.198 Sum_probs=66.9
Q ss_pred HHHHHHHhHHHHHhhhCHH--HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHH--HHHhHHHHHHHhhcCCC
Q 009975 230 VRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEF 305 (521)
Q Consensus 230 vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~~ 305 (521)
.|++++.+|..++..++.. .+.+.++|.+...+.|++|+||..+++++.++++..+.+. ..+++++.+.+++.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4677777887777777654 4567788888888888899999999888888887766544 25677888888888888
Q ss_pred hHHHHHHHHHHHHh
Q 009975 306 PDVRLNIISKLDQV 319 (521)
Q Consensus 306 ~~vr~~a~~~l~~~ 319 (521)
+.||.+| +.+.++
T Consensus 82 ~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 82 ENVRSAA-ELLDRL 94 (97)
T ss_pred hhHHHHH-HHHHHH
Confidence 8888776 444433
No 94
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=0.00043 Score=68.40 Aligned_cols=461 Identities=16% Similarity=0.138 Sum_probs=237.9
Q ss_pred HhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcch----hhhhhhhhhhcCCC-ChH
Q 009975 19 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTAR----VSACGLFHIAYPSA-PDI 93 (521)
Q Consensus 19 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r----~~~~~~~~~~~~~~-~~~ 93 (521)
..+-..+..++-+...++...--+++..+++.--|+. |..++|.+.......++.+- ..+-.++...-... ++.
T Consensus 87 e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~k-WptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSda 165 (960)
T KOG1992|consen 87 EQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDK-WPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDA 165 (960)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchh-hHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHH
Confidence 4455566666666667888888888888887654544 78888888666554443333 23333333322111 122
Q ss_pred HHHHHH-----------HHHH---Hhc--CCCChHHHHHHHHhHHHHHHhhC-------c---hhhHHHHHHHHHHhhcC
Q 009975 94 LKTELR-----------SIYT---QLC--QDDMPMVRRSAASNLGKFAATVE-------P---AHLKTDIMSIFEDLTQD 147 (521)
Q Consensus 94 ~~~~l~-----------~~l~---~l~--~~~~~~vr~~a~~~l~~l~~~~~-------~---~~~~~~l~~~l~~l~~d 147 (521)
...++. .++. +++ .+.+...-+.....+--+++.+. + +...+..++.+.+++.-
T Consensus 166 L~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~ 245 (960)
T KOG1992|consen 166 LWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTY 245 (960)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhc
Confidence 121211 1111 112 12222211112222222222221 1 22345566666666541
Q ss_pred C---------Ch----hHHHHHHHHHHHHhhhcChh--hhhhhhHHHHHHhcCCCChHHHH-----HHHHHHHHHHHHhC
Q 009975 148 D---------QD----SVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRY-----MVANQLYELCEAVG 207 (521)
Q Consensus 148 ~---------~~----~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~-----~~~~~l~~i~~~~~ 207 (521)
+ .. .+|...|+.+.--+.....+ ...++++.....++.+.++..|+ .+.+-+..+++...
T Consensus 246 ~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~ 325 (960)
T KOG1992|consen 246 DNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPH 325 (960)
T ss_pred cCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhh
Confidence 1 11 23555555555444443221 12233444444455443333332 23333443333211
Q ss_pred -----------------------------CCccccchHHHHHHhcCCCh-HHHHHHHHHhHHHHHhhhCHH---HHHHhh
Q 009975 208 -----------------------------PEPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNPE---LAIQHI 254 (521)
Q Consensus 208 -----------------------------~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~---~~~~~~ 254 (521)
.+...++-+..+.+-++-.| ..-|.+|+..+..+++..... .+...+
T Consensus 326 y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v 405 (960)
T KOG1992|consen 326 YAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEV 405 (960)
T ss_pred hHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 11112234444445454333 234678888888888877432 222233
Q ss_pred hHHHHHhccC--CcHHHHHHHHHHHHccccccC--------------h-HHHHHhHHHHHHHhhcCCChHHHHHHHHHHH
Q 009975 255 LPCVKELSSD--SSQHVRSALASVIMGMAPLLG--------------K-DATIEQLLPIFLSLLKDEFPDVRLNIISKLD 317 (521)
Q Consensus 255 ~~~l~~~~~d--~~~~vr~~~~~~l~~i~~~~~--------------~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 317 (521)
-..+.+...+ .+|+-+..++..+..++..-+ - +.+...++|.+.+--..+.|-++..++.-+.
T Consensus 406 ~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~ 485 (960)
T KOG1992|consen 406 QRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIY 485 (960)
T ss_pred HHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceee
Confidence 3334444445 468777777776666653211 1 2223445555544333556788888888888
Q ss_pred HhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhC--------hhhhHHHHHHHHHHHc---CCCcHHH
Q 009975 318 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--------VGFFDDKLGALCMQWL---QDKVYSI 386 (521)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~--------~~~~~~~l~~~l~~~l---~d~~~~v 386 (521)
.+-..+|++.+ -.++|.+...++.+...|...++.++..+....+ ++...+++.+.+.++. +-+...-
T Consensus 486 ~FR~ql~~~~l-m~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~E 564 (960)
T KOG1992|consen 486 TFRNQLGKEHL-MALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAE 564 (960)
T ss_pred eecccCChHHH-HHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccc
Confidence 88888888776 6788999999999999999999888887754433 3333344444444443 2221121
Q ss_pred HHHHHHHHHHHHHHhCHHH--HHhhhHHHH----HhhhcCc-chHHHHHHHHHHHHhhcccCh------HHHhhcHHHHH
Q 009975 387 RDAAANNLKRLAEEFGPEW--AMQHITPQV----LEMINNP-HYLYRMTILRAISLLAPVMGS------EITCSRLLPVV 453 (521)
Q Consensus 387 r~~a~~~l~~l~~~~~~~~--~~~~l~~~l----~~~l~~~-~~~~r~~a~~~l~~l~~~~~~------~~~~~~il~~l 453 (521)
-+-.++++-++........ +...+++.| ....+++ +++.-.-..+.++.+....+. ..+...++|.+
T Consensus 565 neylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~f 644 (960)
T KOG1992|consen 565 NEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVF 644 (960)
T ss_pred cHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 2223333333332221111 122333333 3344443 455555666666666653222 23567788888
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHhhhch
Q 009975 454 INASKDRVPNIKFNVAKVLQSLIPIVDQ 481 (521)
Q Consensus 454 ~~~l~d~~~~VR~~a~~~l~~~~~~~~~ 481 (521)
...+..+..+.--.+...++.+.+..++
T Consensus 645 q~Il~eDI~EfiPYvfQlla~lve~~~~ 672 (960)
T KOG1992|consen 645 QTILSEDIQEFIPYVFQLLAVLVEHSSG 672 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8878777777777888888888876544
No 95
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=0.00036 Score=69.17 Aligned_cols=398 Identities=14% Similarity=0.132 Sum_probs=231.3
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch----hhHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhcChh
Q 009975 96 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQ 170 (521)
Q Consensus 96 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~ 170 (521)
..+.+++..+....++..+..++..|..+.....++ .-.+.+.|.+..+++++ +..+...|++++.++++.++..
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 466677777777768888888877777766544333 24577899999998866 7899999999999999999874
Q ss_pred h---hhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC
Q 009975 171 D---CVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 246 (521)
Q Consensus 171 ~---~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 246 (521)
. ...+.+|.+.+-+. =.--+|-+.+.+++..|.+.-+.+.....-+..+..++.==...++..|+....+.+..+.
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2 23457787776443 3455688999999999988766555544444444444443345678888888889999887
Q ss_pred HHH--HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh--HH----HHHhHHHHHHHhhcCCC----hHHHHHHHH
Q 009975 247 PEL--AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DA----TIEQLLPIFLSLLKDEF----PDVRLNIIS 314 (521)
Q Consensus 247 ~~~--~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~--~~----~~~~l~~~l~~~l~d~~----~~vr~~a~~ 314 (521)
++. +.-..+|.+..+++..+.++-+.++-++..++..+.. +. ....++....+++.-.. ..+....+.
T Consensus 327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIr 406 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIR 406 (1051)
T ss_pred CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHH
Confidence 764 3456789999999888888888888888888876632 11 22345555555554321 122333333
Q ss_pred HHHHhhhhh--chh-hHhhhHHHHHHHHh----cCCChHH-----H--HHHHHHhHHHHhhhC---hhh-h---HHHH--
Q 009975 315 KLDQVNQVI--GID-LLSQSLLPAIVELA----EDRHWRV-----R--LAIIEYIPLLASQLG---VGF-F---DDKL-- 371 (521)
Q Consensus 315 ~l~~~~~~~--~~~-~~~~~~~~~l~~~~----~~~~~~v-----r--~~~~~~l~~l~~~~~---~~~-~---~~~l-- 371 (521)
-+..++... +.. .+...|...+..++ ...+..+ | ....+....+...+. .+. | ...+
T Consensus 407 mls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~ 486 (1051)
T KOG0168|consen 407 MLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYE 486 (1051)
T ss_pred HHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcc
Confidence 333333211 111 11122333333322 1111110 1 111222222222211 110 0 0000
Q ss_pred --------------------------HHHHHHHcCCC----------cHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHH
Q 009975 372 --------------------------GALCMQWLQDK----------VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 415 (521)
Q Consensus 372 --------------------------~~~l~~~l~d~----------~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 415 (521)
..++-+.-.|+ +..-|+..+..=..+... +...++|.|.
T Consensus 487 ~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~-----F~~~llpVLv 561 (1051)
T KOG0168|consen 487 IVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQS-----FGKDLLPVLV 561 (1051)
T ss_pred cccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHH-----HHHHHHHHHH
Confidence 00000000010 001122222211122222 3456889999
Q ss_pred hhhcC-cchHHHHHHHHHHHHhhcccChHHHh-----hcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH----HHH
Q 009975 416 EMINN-PHYLYRMTILRAISLLAPVMGSEITC-----SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----MVE 485 (521)
Q Consensus 416 ~~l~~-~~~~~r~~a~~~l~~l~~~~~~~~~~-----~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~----~~~ 485 (521)
+.+.+ .++.+|.-++.+|.++.-....+.+. ..+-.++-..+...+..|-..|+.....+++.+..- +..
T Consensus 562 eVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~R 641 (1051)
T KOG0168|consen 562 EVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRR 641 (1051)
T ss_pred HHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhh
Confidence 97665 58999999999999988655544332 223345555677777777778888888888776543 334
Q ss_pred hhHHHHHHHhcCC
Q 009975 486 KTIRPCLVELTED 498 (521)
Q Consensus 486 ~~~~~~l~~l~~D 498 (521)
+-++..+..|..|
T Consensus 642 EGV~~~v~~L~~~ 654 (1051)
T KOG0168|consen 642 EGVFHAVKQLSVD 654 (1051)
T ss_pred hhHHHHHHHHhcc
Confidence 5667777776553
No 96
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.56 E-value=9.3e-07 Score=64.86 Aligned_cols=84 Identities=29% Similarity=0.425 Sum_probs=55.6
Q ss_pred HHHHHhc-cCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHH
Q 009975 256 PCVKELS-SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 334 (521)
Q Consensus 256 ~~l~~~~-~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 334 (521)
|.+.+.+ +|+++.+|..++.+++.+. ....+|.+..+++|+++.||..|+.+++.+.. +..++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~~ 65 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG--------DPEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAIP 65 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHH
Confidence 4445544 6777777777777777553 34567777777777777788777777777642 45666
Q ss_pred HHHHHhcC-CChHHHHHHHHHh
Q 009975 335 AIVELAED-RHWRVRLAIIEYI 355 (521)
Q Consensus 335 ~l~~~~~~-~~~~vr~~~~~~l 355 (521)
.+.+.+.+ +++.+|..++.+|
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhc
Confidence 66665544 4455677766655
No 97
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.54 E-value=5.9e-07 Score=65.92 Aligned_cols=85 Identities=28% Similarity=0.398 Sum_probs=51.2
Q ss_pred HHHHHhc-CCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHH
Q 009975 217 PAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP 295 (521)
Q Consensus 217 ~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~ 295 (521)
|.+.+.+ +|+++.+|..++.+|+.+. . +..+|.+.++++|+++.||..++.+++.+. .+..++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~----~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------~~~~~~ 65 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG----D----PEAIPALIELLKDEDPMVRRAAARALGRIG--------DPEAIP 65 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT----H----HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------HHHTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC----C----HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CHHHHH
Confidence 4555555 6667777777776666332 1 234566666667777777777777777663 244566
Q ss_pred HHHHhhcCC-ChHHHHHHHHHHH
Q 009975 296 IFLSLLKDE-FPDVRLNIISKLD 317 (521)
Q Consensus 296 ~l~~~l~d~-~~~vr~~a~~~l~ 317 (521)
.+..++.++ +..||..|+.+|+
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhcC
Confidence 666666554 3445666666653
No 98
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.0003 Score=68.20 Aligned_cols=294 Identities=16% Similarity=0.141 Sum_probs=175.2
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHH
Q 009975 139 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA 218 (521)
Q Consensus 139 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~ 218 (521)
..+.+=+.+.++..-..|..+++++++.--.+....++..++.. .+....||+.++-++-.+.+..++-..+.+-..-
T Consensus 114 n~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS--~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~r 191 (938)
T KOG1077|consen 114 NSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVS--GSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQR 191 (938)
T ss_pred HHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhC--CcchHHHHHHHHHHHHHHHhcCccccChhhHHHH
Confidence 33333344567777888999999988764334444445444332 3445679999999988888875555555567778
Q ss_pred HHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhc-------cC---------CcHHHHHHHHHHHHcccc
Q 009975 219 YVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS-------SD---------SSQHVRSALASVIMGMAP 282 (521)
Q Consensus 219 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~-------~d---------~~~~vr~~~~~~l~~i~~ 282 (521)
+..++.|.+-.|-.++...+..++...+++ ++..+.+.+..+. .| ++++..--++..+... +
T Consensus 192 iv~LL~D~~~gv~ta~~sLi~~lvk~~p~~-yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-p 269 (938)
T KOG1077|consen 192 IVHLLDDQHMGVVTAATSLIEALVKKNPES-YKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-P 269 (938)
T ss_pred HHHHhCccccceeeehHHHHHHHHHcCCHH-HhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC-C
Confidence 889999998888888888887777765543 2333333332221 11 3444444444444443 2
Q ss_pred ccChHHHHHhHHHHHHHhh---cCC--ChHHHHHHH------HHHHHhhhhhch-hhHhhhHHHHHHHHhcCCChHHHHH
Q 009975 283 LLGKDATIEQLLPIFLSLL---KDE--FPDVRLNII------SKLDQVNQVIGI-DLLSQSLLPAIVELAEDRHWRVRLA 350 (521)
Q Consensus 283 ~~~~~~~~~~l~~~l~~~l---~d~--~~~vr~~a~------~~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~vr~~ 350 (521)
.-.+......+...+..++ +++ ...|...-+ +++. ++.++.. ..+.......+.+++.++...+|.-
T Consensus 270 ~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~-l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYL 348 (938)
T KOG1077|consen 270 TPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAIS-LAIHLDSEPELLSRAVNQLGQFLSHRETNIRYL 348 (938)
T ss_pred CCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHhhcccccchhh
Confidence 2222222333333333333 211 112221111 1111 1222221 2223455666777788888899999
Q ss_pred HHHHhHHHHhhhCh-hhhHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHH
Q 009975 351 IIEYIPLLASQLGV-GFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMT 428 (521)
Q Consensus 351 ~~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~ 428 (521)
+++.+..++..-.. +.+.. -...++..|+ +++..+|+.|...|-.++..-. .+.++..+.+.+...++.+|+.
T Consensus 349 aLEsm~~L~ss~~s~davK~-h~d~Ii~sLkterDvSirrravDLLY~mcD~~N----ak~IV~elLqYL~tAd~siree 423 (938)
T KOG1077|consen 349 ALESMCKLASSEFSIDAVKK-HQDTIINSLKTERDVSIRRRAVDLLYAMCDVSN----AKQIVAELLQYLETADYSIREE 423 (938)
T ss_pred hHHHHHHHHhccchHHHHHH-HHHHHHHHhccccchHHHHHHHHHHHHHhchhh----HHHHHHHHHHHHhhcchHHHHH
Confidence 99988888765222 22333 3666777777 8999999999999988886543 3456667777777788888887
Q ss_pred HHHHHHHhhcccCh
Q 009975 429 ILRAISLLAPVMGS 442 (521)
Q Consensus 429 a~~~l~~l~~~~~~ 442 (521)
.+--+.-+++.+..
T Consensus 424 ivlKvAILaEKyAt 437 (938)
T KOG1077|consen 424 IVLKVAILAEKYAT 437 (938)
T ss_pred HHHHHHHHHHHhcC
Confidence 77666666665543
No 99
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=0.00016 Score=70.34 Aligned_cols=252 Identities=17% Similarity=0.118 Sum_probs=141.7
Q ss_pred CChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCC-C
Q 009975 109 DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-K 187 (521)
Q Consensus 109 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~ 187 (521)
+++.||+.++-.||-..-.. ...++...+...+..++...-.+|.-.++-+.-.- ...+.+.-+.....+ .
T Consensus 426 ~~e~v~hG~cLGlGLa~mGS----a~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt----~~~eaiedm~~Ya~ETQ 497 (929)
T KOG2062|consen 426 ENEVVRHGACLGLGLAGMGS----ANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGT----ANQEAIEDMLTYAQETQ 497 (929)
T ss_pred cchhhhhhhhhhccchhccc----ccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCc----CcHHHHHHHHHHhhhhh
Confidence 46677777777666543211 12334444455444443333344444444333221 112233333343333 3
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcH
Q 009975 188 SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ 267 (521)
Q Consensus 188 ~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~ 267 (521)
..++.+...-.+.-+.- +. ..+.=|.+.+++.|.++..|...+.++..--.-.|.......+++. ..+|.|.
T Consensus 498 Heki~RGl~vGiaL~~y--gr---qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~---aVsD~nD 569 (929)
T KOG2062|consen 498 HEKIIRGLAVGIALVVY--GR---QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHV---AVSDVND 569 (929)
T ss_pred HHHHHHHHHHhHHHHHh--hh---hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcc---cccccch
Confidence 44555555554443332 21 1245577888888888888888776654322222333322223222 3578888
Q ss_pred HHHHHHHHHHHccccccChHHHHHhHHHHHHHhh-cCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChH
Q 009975 268 HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 346 (521)
Q Consensus 268 ~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 346 (521)
.||++|+.++|-++-.- ....|..+++| ++.|+.||.+++-+|+-.|...|. ...+..+..+..|+.--
T Consensus 570 DVrRaAVialGFVl~~d------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~----~eAi~lLepl~~D~~~f 639 (929)
T KOG2062|consen 570 DVRRAAVIALGFVLFRD------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL----KEAINLLEPLTSDPVDF 639 (929)
T ss_pred HHHHHHHHHheeeEecC------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc----HHHHHHHhhhhcChHHH
Confidence 99999988888765211 12344444444 456889999999999888877664 34566666777888888
Q ss_pred HHHHHHHHhHHHHhhhChhhh--HHHHHHHHHHHcCCCcHHH
Q 009975 347 VRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSI 386 (521)
Q Consensus 347 vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~v 386 (521)
||+.++-++..+.-+..+... ...+...+.+.+.|.+.+.
T Consensus 640 VRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 640 VRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred HHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHH
Confidence 898888888777666544311 2335555566666665543
No 100
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.49 E-value=2.1e-05 Score=66.07 Aligned_cols=109 Identities=21% Similarity=0.178 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHH
Q 009975 150 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAE 229 (521)
Q Consensus 150 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~ 229 (521)
+.+|..++.+++-++...+. ......|.+...+.|+++.||+.++..+..+... +--.....++..+..++.|++++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHH
Confidence 45666666666666666543 3344556666667777777777777776666532 11111234446666667777777
Q ss_pred HHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHh
Q 009975 230 VRIAAAGKVTKFCRILNPELAIQHILPCVKEL 261 (521)
Q Consensus 230 vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ 261 (521)
||..|...+..+.....++.+.+.+.+.+..+
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l 110 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNIIYNNFPELISSL 110 (178)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 77777777777777655555544444444433
No 101
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=0.0022 Score=66.25 Aligned_cols=159 Identities=16% Similarity=0.187 Sum_probs=118.5
Q ss_pred HHHhHHHHhh---hChhhhHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhc-Ccch
Q 009975 352 IEYIPLLASQ---LGVGFFDDKLGALCMQWLQD----KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHY 423 (521)
Q Consensus 352 ~~~l~~l~~~---~~~~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~ 423 (521)
.+.+..+++. .|++.....+.|++....+. .++.++.+|.-+++++... ..+ +.+.-+|.+...++ +|++
T Consensus 898 ~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~-fces~l~llftimeksp~p 975 (1251)
T KOG0414|consen 898 ADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAE-FCESHLPLLFTIMEKSPSP 975 (1251)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHH-HHHHHHHHHHHHHhcCCCc
Confidence 3444444432 46566667788999888743 5699999999999998743 233 34567788888765 8999
Q ss_pred HHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccH
Q 009975 424 LYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDV 503 (521)
Q Consensus 424 ~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~v 503 (521)
++|..++-++|.++-.++. +.+..-+.++..+.|+++.||..|.-+++.+... +--.+ .-.++.+..++.|+++.|
T Consensus 976 ~IRsN~VvalgDlav~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn-dmiKV-KGql~eMA~cl~D~~~~I 1051 (1251)
T KOG0414|consen 976 RIRSNLVVALGDLAVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN-DMIKV-KGQLSEMALCLEDPNAEI 1051 (1251)
T ss_pred eeeecchheccchhhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh-hhhHh-cccHHHHHHHhcCCcHHH
Confidence 9999999999988865443 3466778999999999999999999999887753 11112 334566777899999999
Q ss_pred HHHHHHHHHHHHH
Q 009975 504 RFFATQAIQSIDH 516 (521)
Q Consensus 504 r~~a~~al~~l~~ 516 (521)
|..|..-+..|.+
T Consensus 1052 sdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 1052 SDLAKSFFKELSS 1064 (1251)
T ss_pred HHHHHHHHHHhhh
Confidence 9999977776654
No 102
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.47 E-value=0.0016 Score=62.96 Aligned_cols=399 Identities=16% Similarity=0.080 Sum_probs=215.3
Q ss_pred hhhhhhhhhhcCCCChH----HHHHHHHHHHHhcCCCC-hHHHHHHHHhHHHHHHhhCc-----hhhHHHHHHHHHHhhc
Q 009975 77 VSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDM-PMVRRSAASNLGKFAATVEP-----AHLKTDIMSIFEDLTQ 146 (521)
Q Consensus 77 ~~~~~~~~~~~~~~~~~----~~~~l~~~l~~l~~~~~-~~vr~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~l~~ 146 (521)
.....+++..+.+..+. .....++.+.+++++++ ..++.+..+++.++.+..+. ......+++.+..+..
T Consensus 71 ~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s 150 (678)
T KOG1293|consen 71 NGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYS 150 (678)
T ss_pred hhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHh
Confidence 34445555555433222 34556677778888887 88999999999999876542 1233445555555444
Q ss_pred -CCChhHHHHHHHHHHHHhhhcChh-h-hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCC----------cccc
Q 009975 147 -DDQDSVRLLAVEGCAALGKLLEPQ-D-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----------PTRM 213 (521)
Q Consensus 147 -d~~~~vr~~a~~~l~~l~~~~~~~-~-~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~----------~~~~ 213 (521)
......+..+ ............+ . +...+..-+.-+....+...|.++..++.+-...+-.+ ....
T Consensus 151 ~~lk~~~~l~~-~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~ 229 (678)
T KOG1293|consen 151 IELKYISRLDV-SRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDK 229 (678)
T ss_pred hhhhhhhhhhh-hhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhcc
Confidence 2222222111 1111111111000 0 11123333333344446778888888887322211111 1123
Q ss_pred chHH--HHHHhcCCChHHHHHHHHHhHHHHHhhhCHH-------HHH----Hhh-hHHHHHhccCCcHHHHHHHHHHHHc
Q 009975 214 DLVP--AYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-------LAI----QHI-LPCVKELSSDSSQHVRSALASVIMG 279 (521)
Q Consensus 214 ~l~~--~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-------~~~----~~~-~~~l~~~~~d~~~~vr~~~~~~l~~ 279 (521)
.+.+ ...++++|++.+.|..++.++..+...--.. .+. +.+ .-....+..|+-|..-...+..+..
T Consensus 230 ~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~ 309 (678)
T KOG1293|consen 230 GVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCI 309 (678)
T ss_pred ccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHH
Confidence 3444 4556788888888877777777665532000 000 001 1112233445554322222222222
Q ss_pred ---cccccChHHHHHh---HHHHHHHh---hcCCChHHHHHHHHHHHHh---hhhhchhhHhhhHH-----HHHHHHhcC
Q 009975 280 ---MAPLLGKDATIEQ---LLPIFLSL---LKDEFPDVRLNIISKLDQV---NQVIGIDLLSQSLL-----PAIVELAED 342 (521)
Q Consensus 280 ---i~~~~~~~~~~~~---l~~~l~~~---l~d~~~~vr~~a~~~l~~~---~~~~~~~~~~~~~~-----~~l~~~~~~ 342 (521)
+............ ..+.++.. ++...++.|.-++....-. +...+.. ..+.+. ..+......
T Consensus 310 ~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~-~~k~~l~~~t~~~l~~~~~~ 388 (678)
T KOG1293|consen 310 LARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEIS-LKKEILETTTESHLMCLPPI 388 (678)
T ss_pred HHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchh-HHHHHHHHHHHHHHcccccc
Confidence 2222211111122 22222221 2344455555444332211 1111111 112222 222222344
Q ss_pred CChHHHHHHHHHhHHHHhhhC---hhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHh
Q 009975 343 RHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLE 416 (521)
Q Consensus 343 ~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~ 416 (521)
.+..++.+++.++..+...+. ...-..++...+.+++.|++..|...+..++-.++-.+++ .++....+..+.+
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 567788888888777665432 2222345555666777999999999999999999877764 3456778899999
Q ss_pred hhcCcchHHHHHHHHHHHHhhcccChHH---H-hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975 417 MINNPHYLYRMTILRAISLLAPVMGSEI---T-CSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 417 ~l~~~~~~~r~~a~~~l~~l~~~~~~~~---~-~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~ 477 (521)
++.+++..+|..+++++.++.=...... + ..-....+..+.+|+.+.|...+++.+..+..
T Consensus 469 ~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 469 MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 9999999999999999999874333221 1 23345677788999999999999999988754
No 103
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.47 E-value=2.5e-05 Score=71.95 Aligned_cols=409 Identities=14% Similarity=0.087 Sum_probs=233.5
Q ss_pred hcCchhHHHHHHHHHHHHHHhhcChhHHH----HhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHHHH
Q 009975 29 CTVEETCVRDKAVESLCRIGSQMRESDLV----DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ 104 (521)
Q Consensus 29 ~~~~~~~vR~~a~~~l~~i~~~~~~~~~~----~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 104 (521)
.....+.+--+.++++..+....+.++++ ..++..+..++.+.+..+|.+++.+++.+...... ..++-..+..
T Consensus 116 ~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~--~pei~~~~~~ 193 (728)
T KOG4535|consen 116 VAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAP--LPEVQLLLQQ 193 (728)
T ss_pred HHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCC--CHHHHHHhcC
Confidence 34556677778889999999988877654 34445556666777788999998888877643211 1222222222
Q ss_pred hcCCCCh--------H--HHHHHHHhHHHHHHhhCch------------------hhHHHHHHHHHHhhcC--CChhHHH
Q 009975 105 LCQDDMP--------M--VRRSAASNLGKFAATVEPA------------------HLKTDIMSIFEDLTQD--DQDSVRL 154 (521)
Q Consensus 105 l~~~~~~--------~--vr~~a~~~l~~l~~~~~~~------------------~~~~~l~~~l~~l~~d--~~~~vr~ 154 (521)
-.+..+. + ..--+..++.++...-++. ........-....... ....+|.
T Consensus 194 ~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rl 273 (728)
T KOG4535|consen 194 PCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRL 273 (728)
T ss_pred CCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHH
Confidence 2211110 0 0101111111111110000 0000111111122222 2347899
Q ss_pred HHHHHHHHHhhhcCh-hhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCc----cccchHH--HHHHhc----
Q 009975 155 LAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVP--AYVRLL---- 223 (521)
Q Consensus 155 ~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~----~~~~l~~--~l~~~l---- 223 (521)
.+.+.+..++.+++- ....-++...+.....+..+.++..++.++.++....+.+. .+..+.. +..-++
T Consensus 274 e~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~ 353 (728)
T KOG4535|consen 274 EALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPL 353 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCC
Confidence 999999999998754 22344566667777889999999999999988877655222 1111111 111111
Q ss_pred ----CCC-hHHHHHHHHHhHHHHHhhh----CHHHHHHhhhHHHHHhccCC-cHHHHHHHHHHHHccccccChH---HHH
Q 009975 224 ----RDN-EAEVRIAAAGKVTKFCRIL----NPELAIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKD---ATI 290 (521)
Q Consensus 224 ----~d~-~~~vr~~a~~~l~~l~~~~----~~~~~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~i~~~~~~~---~~~ 290 (521)
.|. .+..+.+++.++..++... +.. .....+.+..-+.|. +.-+|.++..+++...-+-+-. .+.
T Consensus 354 ~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~--~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv 431 (728)
T KOG4535|consen 354 PRALYDSEHPTLQASACDALSSILPEAFSNLPND--RQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFV 431 (728)
T ss_pred hhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCc--chhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHH
Confidence 121 2345666666666655432 111 123455566556654 4557888887777665443322 234
Q ss_pred HhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc-----hhh----HhhhHHHHHHHH---hcCCChHHHHHHHHHhHHH
Q 009975 291 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-----IDL----LSQSLLPAIVEL---AEDRHWRVRLAIIEYIPLL 358 (521)
Q Consensus 291 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~-----~~~----~~~~~~~~l~~~---~~~~~~~vr~~~~~~l~~l 358 (521)
......+...+.|....+|.++..+++.+...+- ++. +....+..+.+. ..-.+.+||..+.+.++.+
T Consensus 432 ~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnl 511 (728)
T KOG4535|consen 432 ADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNL 511 (728)
T ss_pred HHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhH
Confidence 4566677778888889999999999998865542 111 112222222222 1234678999999999888
Q ss_pred HhhhCh---hhh----HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH----HHHHhhhHHHHHhhhcC-cchHHH
Q 009975 359 ASQLGV---GFF----DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP----EWAMQHITPQVLEMINN-PHYLYR 426 (521)
Q Consensus 359 ~~~~~~---~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~~-~~~~~r 426 (521)
.+.+.+ -.+ ...+...+....-..+..||..++.+++++.+.-.. ......+++.|..++.+ +|..+|
T Consensus 512 lQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVR 591 (728)
T KOG4535|consen 512 LQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVR 591 (728)
T ss_pred HHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEe
Confidence 776542 111 111222222233356778999999999999864322 22346688888887654 789999
Q ss_pred HHHHHHHHHhhcccC
Q 009975 427 MTILRAISLLAPVMG 441 (521)
Q Consensus 427 ~~a~~~l~~l~~~~~ 441 (521)
..|+.++.......+
T Consensus 592 i~AA~aL~vp~~re~ 606 (728)
T KOG4535|consen 592 IRAAAALSVPGKREQ 606 (728)
T ss_pred ehhhhhhcCCCCccc
Confidence 999988877766444
No 104
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.47 E-value=1.1e-06 Score=69.04 Aligned_cols=108 Identities=17% Similarity=0.151 Sum_probs=72.2
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhhccc---ChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--
Q 009975 408 QHITPQVLEMINNPHYLYRMTILRAISLLAPVM---GSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-- 482 (521)
Q Consensus 408 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~---~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~-- 482 (521)
..+++.+.+++.++++.+|..++.+++.++... ........++|.+.+++.|+++.||..++.+|+.++...+..
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 346667777777777777777777777777531 112223467777777777777778888888887777653221
Q ss_pred -HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 009975 483 -MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 515 (521)
Q Consensus 483 -~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~ 515 (521)
.....+++.+.+++++.+.++|..+.+++..+.
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 122446777777777777788888887777765
No 105
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.47 E-value=0.0017 Score=62.83 Aligned_cols=415 Identities=14% Similarity=0.063 Sum_probs=215.0
Q ss_pred HHHHHHhcCC--CChHHHHHHHHhHHHHHHhhCc---hhhHHHHHHHHHHhhcCCC-hhHHHHHHHHHHHHhhhcChh--
Q 009975 99 RSIYTQLCQD--DMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQ-DSVRLLAVEGCAALGKLLEPQ-- 170 (521)
Q Consensus 99 ~~~l~~l~~~--~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~~~-- 170 (521)
.+.+..+.+. ..++........++.++..... +......++.+.+++.+.+ ..++....+++..+.+..+..
T Consensus 53 v~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~ 132 (678)
T KOG1293|consen 53 VELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDK 132 (678)
T ss_pred hHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhccccccc
Confidence 3445555444 3455555566666665543222 2344556777888888888 799999999999998875332
Q ss_pred ---hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC-CC-c-cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhh
Q 009975 171 ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG-PE-P-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 244 (521)
Q Consensus 171 ---~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~-~~-~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 244 (521)
.....+++.+..+...+...+-..-+..+. .+.... +. . ....+...+.-++.-.+..+|.+|..++......
T Consensus 133 ~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a-~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~i 211 (678)
T KOG1293|consen 133 KMSLHLKSIIVKFSLLYSIELKYISRLDVSRAA-HLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRI 211 (678)
T ss_pred chhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhc-cccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhcccee
Confidence 223345555555444222111111111111 111111 00 0 0122333333333333567889998888832222
Q ss_pred h--CHH---HH-----HHhhhH--HHHHhccCCcHHHHHHHHHHHHcccccc-ChHHH----------HHhHHH-HHHHh
Q 009975 245 L--NPE---LA-----IQHILP--CVKELSSDSSQHVRSALASVIMGMAPLL-GKDAT----------IEQLLP-IFLSL 300 (521)
Q Consensus 245 ~--~~~---~~-----~~~~~~--~l~~~~~d~~~~vr~~~~~~l~~i~~~~-~~~~~----------~~~l~~-~l~~~ 300 (521)
+ ++. .+ ...+.+ .+..+..|++...|...+.++..+...- .++.. .+.+.. ....+
T Consensus 212 L~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l 291 (678)
T KOG1293|consen 212 LRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVL 291 (678)
T ss_pred eecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhhee
Confidence 2 111 11 111223 3455667777777766666666554321 11100 011111 11223
Q ss_pred hcCCChHHHHHHHHHH---HHhhhhhchhhHhhhHHHHHHHH------hcCCChHHHHHHHHHhHHH---HhhhCh---h
Q 009975 301 LKDEFPDVRLNIISKL---DQVNQVIGIDLLSQSLLPAIVEL------AEDRHWRVRLAIIEYIPLL---ASQLGV---G 365 (521)
Q Consensus 301 l~d~~~~vr~~a~~~l---~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~vr~~~~~~l~~l---~~~~~~---~ 365 (521)
..|+....-..++.-+ ..+.+.+..........+.+.++ +....++.|.-++...... +...+. +
T Consensus 292 ~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k 371 (678)
T KOG1293|consen 292 MNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKK 371 (678)
T ss_pred ecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHH
Confidence 3333211111111111 11222222222222223322222 1334444444433322111 111111 1
Q ss_pred hhHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh---CHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccC
Q 009975 366 FFDDK-LGALCMQWLQDKVYSIRDAAANNLKRLAEEF---GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 441 (521)
Q Consensus 366 ~~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~ 441 (521)
.+... ....+.....-.+..++.+|+.++..+.... ....-...+...+.+++.+|.-.+..+++.++..+...++
T Consensus 372 ~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs 451 (678)
T KOG1293|consen 372 EILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS 451 (678)
T ss_pred HHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc
Confidence 11111 2222223333467788889988887765432 2222235566777778899999999999999999998777
Q ss_pred h---HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH----HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 009975 442 S---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 514 (521)
Q Consensus 442 ~---~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~----~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l 514 (521)
+ .+.....+..+.+.+.++.+++|..+.++|..+.-..... .....-...+..+.+|+|+.|...+...+..+
T Consensus 452 ~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 452 NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 5 3455778899999999999999999999998876432221 12223344556688999999988887776654
No 106
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.46 E-value=1.2e-05 Score=67.52 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHHHHhcCCCChH
Q 009975 33 ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPM 112 (521)
Q Consensus 33 ~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 112 (521)
++.+|..++.++++++...+ .+.+..+|.+.....|++..+|..++..+..+....--..+..++..+..++.|+++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~--~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP--NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc--HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHH
Confidence 57899999999999999886 4456778888888889999999999888877765433334667767777888999999
Q ss_pred HHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcC
Q 009975 113 VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD 147 (521)
Q Consensus 113 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d 147 (521)
||..|...+..+.....+..+.+.+.+.+..+.+.
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNIIYNNFPELISSLNNC 113 (178)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCc
Confidence 99999999999998766666777777777776653
No 107
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.46 E-value=9.6e-06 Score=71.38 Aligned_cols=190 Identities=18% Similarity=0.143 Sum_probs=124.7
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchh--hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhh-hh
Q 009975 97 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH--LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD-CV 173 (521)
Q Consensus 97 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~ 173 (521)
.+-+++.-+-...+|.+++.+..+++..+..-.... ..-..++.+..++.++++.+|..|+.++.+++....... ..
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik 92 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIK 92 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHH
Confidence 444444444456789999999999999764322222 223568899999999999999999999999887654432 22
Q ss_pred hhhHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC--HHHH
Q 009975 174 AHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PELA 250 (521)
Q Consensus 174 ~~l~~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~ 250 (521)
.++-..+.....+ .+..++.++.+.|..+.-.-.........+|.+..++..++..+|..+++.|..+++.-. ++-+
T Consensus 93 ~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll 172 (254)
T PF04826_consen 93 MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELL 172 (254)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHH
Confidence 3333333333333 466788888888888753222111223467778888888888999999999998887542 2233
Q ss_pred HHhhhHHHHHhccCC-cHHHHHHHHHHHHccccccCh
Q 009975 251 IQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGK 286 (521)
Q Consensus 251 ~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~i~~~~~~ 286 (521)
..+..+.+..+++.+ +..+...++..+..+...+.+
T Consensus 173 ~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 173 SAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred hccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 345666677777654 445555666666666554443
No 108
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.43 E-value=0.0001 Score=62.91 Aligned_cols=219 Identities=20% Similarity=0.212 Sum_probs=124.2
Q ss_pred HHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCC--ChhHHHHHHHHHHHHhhhcChhhhhhhhHH
Q 009975 101 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD--QDSVRLLAVEGCAALGKLLEPQDCVAHILP 178 (521)
Q Consensus 101 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 178 (521)
.+.+...|++...++..+.+||+.. ...-+|.+...+.|+ .+-||..|.++|+.+.. +.+.+
T Consensus 40 ~i~ka~~d~s~llkhe~ay~LgQ~~--------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--------~~~~~ 103 (289)
T KOG0567|consen 40 AITKAFIDDSALLKHELAYVLGQMQ--------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--------PESLE 103 (289)
T ss_pred HHHHhcccchhhhccchhhhhhhhc--------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--------hhhHH
Confidence 3333333444444555555555443 123345555555544 45788888888888762 34667
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHhCCCc------------ccc---chHHHHHHhcCCCh-HH-HHHHHHHhHHHH
Q 009975 179 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEP------------TRM---DLVPAYVRLLRDNE-AE-VRIAAAGKVTKF 241 (521)
Q Consensus 179 ~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~------------~~~---~l~~~l~~~l~d~~-~~-vr~~a~~~l~~l 241 (521)
++.+..+|+-..||..+..++.++-..-+.+. .++ .-+.-+...+.|.+ +. -|..|+-.|..+
T Consensus 104 ~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~ 183 (289)
T KOG0567|consen 104 ILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI 183 (289)
T ss_pred HHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc
Confidence 77777788888888887667766643211000 000 01122222222222 11 122333222221
Q ss_pred HhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcC--CChHHHHHHHHHHHHh
Q 009975 242 CRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQV 319 (521)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~~ 319 (521)
|.+ .-+..+.+-+.+++.-.|..++.++|++- ...-+|.+.+.|.| +++.||..|+.+|+.+
T Consensus 184 ----g~E----eaI~al~~~l~~~SalfrhEvAfVfGQl~--------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaI 247 (289)
T KOG0567|consen 184 ----GTE----EAINALIDGLADDSALFRHEVAFVFGQLQ--------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAI 247 (289)
T ss_pred ----CcH----HHHHHHHHhcccchHHHHHHHHHHHhhcc--------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhh
Confidence 222 12344455556667778888888888775 23346666666554 4677888888888887
Q ss_pred hhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHH
Q 009975 320 NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 359 (521)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~ 359 (521)
+. +..++.+.++.+|+..-||..+.-++...-
T Consensus 248 a~--------e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 248 AD--------EDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred cC--------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 76 566777788888888888877776666543
No 109
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=0.00018 Score=69.85 Aligned_cols=227 Identities=16% Similarity=0.092 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc--hhhHhhhHHHHHHHHhcCCCh
Q 009975 268 HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAEDRHW 345 (521)
Q Consensus 268 ~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 345 (521)
+|-+.++..+..+-+.-..+.....++-.++......+..||..++.-+..+....+ .+.+.+.+...+..-+.|..+
T Consensus 61 RIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep 140 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREP 140 (892)
T ss_pred HHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCc
Confidence 444444444444433333344556666677777778888899888888888776333 344457777777777788888
Q ss_pred HHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchH
Q 009975 346 RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYL 424 (521)
Q Consensus 346 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~ 424 (521)
.||..++.+++.+=.--+.+. -.+...+..+ -+|++++||.+|+.++.. ...-.|.+.+...|-+..
T Consensus 141 ~VRiqAv~aLsrlQ~d~~dee--~~v~n~l~~liqnDpS~EVRRaaLsnI~v----------dnsTlp~IveRarDV~~a 208 (892)
T KOG2025|consen 141 NVRIQAVLALSRLQGDPKDEE--CPVVNLLKDLIQNDPSDEVRRAALSNISV----------DNSTLPCIVERARDVSGA 208 (892)
T ss_pred hHHHHHHHHHHHHhcCCCCCc--ccHHHHHHHHHhcCCcHHHHHHHHHhhcc----------CcccchhHHHHhhhhhHH
Confidence 899888888877653222221 1233333333 368889999988777632 234567777777776655
Q ss_pred HHH-HHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccH
Q 009975 425 YRM-TILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDV 503 (521)
Q Consensus 425 ~r~-~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~v 503 (521)
.|. .+-.++..+ +....+ .....-.+-.++.|....||.++.+.+..=.-. .....++..|.++--....+|
T Consensus 209 nRrlvY~r~lpki-d~r~ls--i~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~----~~dgni~ElL~~ldvsnss~v 281 (892)
T KOG2025|consen 209 NRRLVYERCLPKI-DLRSLS--IDKRVLLLEWGLNDREFSVKGALVDAILSGWLR----FSDGNILELLERLDVSNSSEV 281 (892)
T ss_pred HHHHHHHHhhhhh-hhhhhh--HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhh----hccccHHHHHHHhccccchHH
Confidence 544 444444444 321111 123445566678888888888887776431111 112456677777655566677
Q ss_pred HHHHHHHHHH
Q 009975 504 RFFATQAIQS 513 (521)
Q Consensus 504 r~~a~~al~~ 513 (521)
+..|.+|+-+
T Consensus 282 avk~lealf~ 291 (892)
T KOG2025|consen 282 AVKALEALFS 291 (892)
T ss_pred HHHHHHHHHH
Confidence 7777777766
No 110
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=0.0001 Score=71.45 Aligned_cols=105 Identities=25% Similarity=0.227 Sum_probs=49.9
Q ss_pred hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC--CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH
Q 009975 172 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL 249 (521)
Q Consensus 172 ~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 249 (521)
..+.++..+.+..+.++-.||..+++.+..+....+ ++...+.+...+..-+.|.++.||..|+.+|..+-..-+.+.
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee 161 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE 161 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc
Confidence 344444555555555666666666666555544222 122223344444445556666666666666655543221111
Q ss_pred HHHhhhHHHHHhc-cCCcHHHHHHHHHHHH
Q 009975 250 AIQHILPCVKELS-SDSSQHVRSALASVIM 278 (521)
Q Consensus 250 ~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~ 278 (521)
-.+...+..++ .|+++.||+++..++.
T Consensus 162 --~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 162 --CPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred --ccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 11233333333 3566666666554443
No 111
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.43 E-value=2.4e-06 Score=66.99 Aligned_cols=107 Identities=16% Similarity=0.058 Sum_probs=82.0
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh---CHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh--HH
Q 009975 370 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEF---GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EI 444 (521)
Q Consensus 370 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~--~~ 444 (521)
.++|.+..++.++++.+|..++.+++.++... .........+|.+.+++.++++++|..++.+++.++...+. ..
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 36677777888888888888888888887532 22233457888888888899999999999999999875432 11
Q ss_pred -HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 009975 445 -TCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476 (521)
Q Consensus 445 -~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~ 476 (521)
....+++.+...+++.+..+|..++.++..++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 23458899999999989999999999988765
No 112
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=4.5e-05 Score=74.05 Aligned_cols=131 Identities=18% Similarity=0.155 Sum_probs=58.1
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHH-HhcCCChHHHHHHHHHhHHHHhhhChhhhHHHH
Q 009975 293 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 371 (521)
Q Consensus 293 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 371 (521)
.=|.+.+++.|.+|-.|.+.+.++..-.-..|. ...+..+.- ..+|.+.+||.+++.+++.++-. .+..
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn----nkair~lLh~aVsD~nDDVrRaAVialGFVl~~------dp~~ 589 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLALAYVGTGN----NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR------DPEQ 589 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc----hhhHHHhhcccccccchHHHHHHHHHheeeEec------Chhh
Confidence 344445555555555555554444332222221 122222222 23555555555555555443311 1223
Q ss_pred HHHHHHHcCC-CcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 009975 372 GALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLA 437 (521)
Q Consensus 372 ~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~ 437 (521)
+|...++|.+ -|+-||-+++-+||-.+...|.. ..+..|..+..|+..-||+.|+-+++-+.
T Consensus 590 ~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~----eAi~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 590 LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK----EAINLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH----HHHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 3334444333 34555555555555555444422 23333444445555555555555555444
No 113
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=98.42 E-value=0.00018 Score=71.00 Aligned_cols=408 Identities=14% Similarity=0.078 Sum_probs=221.2
Q ss_pred HHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcCh-hHHHHhHHHHHHHhhcCC-CCcchhhhhhhhhhhcCCCChHHH
Q 009975 18 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-SDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDILK 95 (521)
Q Consensus 18 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~-~~~~~~l~p~i~~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~~ 95 (521)
+..+++.+..-++++...||...++.+..+-+.+.. ..+.==+-.++.++.+.+ ...+|..++..+...+++++.+.+
T Consensus 21 L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~e~ 100 (501)
T PF13001_consen 21 LDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDEER 100 (501)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHHHH
Confidence 445555554445567889999999999999988765 333322223334444433 566777777777888889988889
Q ss_pred HHHHHHHHHhcCCCChH---HHHHHHHhHHHHHHhhCch---h--hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHh---
Q 009975 96 TELRSIYTQLCQDDMPM---VRRSAASNLGKFAATVEPA---H--LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG--- 164 (521)
Q Consensus 96 ~~l~~~l~~l~~~~~~~---vr~~a~~~l~~l~~~~~~~---~--~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~--- 164 (521)
.+++|.+.+.++..... .....+..+.-+++..... . .....-+--...+.+ .........-...+.
T Consensus 101 ~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~l~~~~~~~~~l~ 178 (501)
T PF13001_consen 101 RELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSLGLSD--FCDDVFLAPWFSKFLLLQ 178 (501)
T ss_pred HHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHHhhcc--hHHHHHcchhhccccccc
Confidence 99999988877643211 1111121222222221110 0 000000000000001 000000000000000
Q ss_pred -------hhcChhhhhhhhHH-HHHHhcC-CC-------ChHHHHHHHHHHHHHHHHhCCCcc-ccchHHHHHHhcCCCh
Q 009975 165 -------KLLEPQDCVAHILP-VIVNFSQ-DK-------SWRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLRDNE 227 (521)
Q Consensus 165 -------~~~~~~~~~~~l~~-~l~~~~~-d~-------~~~vR~~~~~~l~~i~~~~~~~~~-~~~l~~~l~~~l~d~~ 227 (521)
.....+ ..+.+.. -...... .. -.++|..+++-+ ..... ..+.++.++-...|+.
T Consensus 179 ~~~~~~~pgl~~~-~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL-------~sg~f~d~~~~~~~liAsad~~ 250 (501)
T PF13001_consen 179 PNRAYACPGLSPA-DPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFL-------ASGFFPDEERFPPLLIASADSN 250 (501)
T ss_pred cccccCCCCCCCC-CCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHH-------HhcCCCcHhHHhheeeEEeCCc
Confidence 000000 0011111 0000000 11 112343333333 22222 2356666666778888
Q ss_pred HHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHH--Hhcc-----CCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHh
Q 009975 228 AEVRIAAAGKVTKFCRILNPELAIQHILPCVK--ELSS-----DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL 300 (521)
Q Consensus 228 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~--~~~~-----d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~ 300 (521)
.+|...|-..|..+....+...+.+.++..+. ..-. --++.+|.-....+.+- .........++.++...
T Consensus 251 ~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS---~~Aa~~~~~~~~i~~~~ 327 (501)
T PF13001_consen 251 SSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKS---VIAATSFPNILQIVFDG 327 (501)
T ss_pred chHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHh---HHHHhCCccHHHHHhcc
Confidence 89999999999888877777677666666665 2111 12456666655544432 11111234556666666
Q ss_pred hcCC--ChHHHHHHHHHH---HHhhhhhchhhHhhhHHHHHHH----Hhc--------CCChHHHHHHHHHhHHHHhhhC
Q 009975 301 LKDE--FPDVRLNIISKL---DQVNQVIGIDLLSQSLLPAIVE----LAE--------DRHWRVRLAIIEYIPLLASQLG 363 (521)
Q Consensus 301 l~d~--~~~vr~~a~~~l---~~~~~~~~~~~~~~~~~~~l~~----~~~--------~~~~~vr~~~~~~l~~l~~~~~ 363 (521)
+.+. +...|..+++.+ .......+...+ +.+-|.+.. ..+ ..+...|..+.++++.+++..+
T Consensus 328 l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l-~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p 406 (501)
T PF13001_consen 328 LYSDNTNSKLKSLALQFIRGSSWIFKHISPQIL-KLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAP 406 (501)
T ss_pred ccCCccccccchhcchhhhcchHHhhhcCHHHH-HHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCc
Confidence 6666 678888888888 777666665433 233333322 221 2456789999999999998876
Q ss_pred hhhhH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHH-----HhhhHHHH-HhhhcCcchHHHHHHHHHHHHh
Q 009975 364 VGFFD-DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA-----MQHITPQV-LEMINNPHYLYRMTILRAISLL 436 (521)
Q Consensus 364 ~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~l~~~l-~~~l~~~~~~~r~~a~~~l~~l 436 (521)
.-... -.++..++..+.++.+++|.+.-++|..+...+....- .......+ .....+....+|.+|+.+...+
T Consensus 407 ~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~ 486 (501)
T PF13001_consen 407 SLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANAC 486 (501)
T ss_pred ccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 54322 23556666667999999999999999999987743211 11122222 2234455678999999999888
Q ss_pred hcc
Q 009975 437 APV 439 (521)
Q Consensus 437 ~~~ 439 (521)
.+.
T Consensus 487 fpf 489 (501)
T PF13001_consen 487 FPF 489 (501)
T ss_pred CCc
Confidence 763
No 114
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=98.41 E-value=0.00031 Score=69.36 Aligned_cols=406 Identities=12% Similarity=0.081 Sum_probs=214.7
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc-hhhHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhcChhhh
Q 009975 95 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQDC 172 (521)
Q Consensus 95 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~~ 172 (521)
.+.+++.+..-+.+++..||+.+.+.+..+-+.+.. ..+.=-+-.++.+..+.+ ...||..++-.+..-.+.++.+ .
T Consensus 21 L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~-e 99 (501)
T PF13001_consen 21 LDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDE-E 99 (501)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHH-H
Confidence 444455444445567789999999999999888765 222222333444444444 5789999987777666777554 4
Q ss_pred hhhhHHHHHHhcCCCC---hHHHHHHHHHHHHHHHHhCCCcccc-----chHHHHHHhcCCChHHHHHHHHHhHHHHHhh
Q 009975 173 VAHILPVIVNFSQDKS---WRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 244 (521)
Q Consensus 173 ~~~l~~~l~~~~~d~~---~~vR~~~~~~l~~i~~~~~~~~~~~-----~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 244 (521)
...++|.+.+.+.... .......+..+..+++.......+. ..-+.-...+.|. ..........+.+...
T Consensus 100 ~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~l~~~~~~~~~l 177 (501)
T PF13001_consen 100 RRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSLGLSDF--CDDVFLAPWFSKFLLL 177 (501)
T ss_pred HHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHHhhcch--HHHHHcchhhcccccc
Confidence 5567777777665322 1222222223332333222110000 0000000111110 0000111111111000
Q ss_pred h-----CHHHHHHhhhHHH-----HHhcc------C--CcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCCh
Q 009975 245 L-----NPELAIQHILPCV-----KELSS------D--SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP 306 (521)
Q Consensus 245 ~-----~~~~~~~~~~~~l-----~~~~~------d--~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~ 306 (521)
. ........-.|.+ ..... + .-..+|...++.+..-. ++ .+..++.++-...|++.
T Consensus 178 ~~~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~--f~----d~~~~~~~liAsad~~~ 251 (501)
T PF13001_consen 178 QPNRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGF--FP----DEERFPPLLIASADSNS 251 (501)
T ss_pred ccccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcC--CC----cHhHHhheeeEEeCCcc
Confidence 0 0000000000111 00000 0 01235555555554332 11 22455555556678888
Q ss_pred HHHHHHHHHHHHhhhhhchhhHhhhHHHHHH--HHh-----cCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHc
Q 009975 307 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIV--ELA-----EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 379 (521)
Q Consensus 307 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~--~~~-----~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 379 (521)
+|...|-..+.++...+....+.+.++..+. ... .--++.+|..++..|.. ........+.++.++...+
T Consensus 252 ~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~k---S~~Aa~~~~~~~~i~~~~l 328 (501)
T PF13001_consen 252 SVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSK---SVIAATSFPNILQIVFDGL 328 (501)
T ss_pred hHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHH---hHHHHhCCccHHHHHhccc
Confidence 9988888888887766554444444444444 111 12356677666555543 3222222355667777777
Q ss_pred CCC--cHHHHHHHHHHH---HHHHHHhCHHHHHhhhHHHH----Hhhhc--------CcchHHHHHHHHHHHHhhcccCh
Q 009975 380 QDK--VYSIRDAAANNL---KRLAEEFGPEWAMQHITPQV----LEMIN--------NPHYLYRMTILRAISLLAPVMGS 442 (521)
Q Consensus 380 ~d~--~~~vr~~a~~~l---~~l~~~~~~~~~~~~l~~~l----~~~l~--------~~~~~~r~~a~~~l~~l~~~~~~ 442 (521)
..+ +..+|..++..+ .......+.... +.+-|.+ ...+. ..+...|..+.+++|.++.....
T Consensus 329 ~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l-~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~ 407 (501)
T PF13001_consen 329 YSDNTNSKLKSLALQFIRGSSWIFKHISPQIL-KLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPS 407 (501)
T ss_pred cCCccccccchhcchhhhcchHHhhhcCHHHH-HHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcc
Confidence 776 788999998888 777766665432 2222222 22331 23578999999999999986554
Q ss_pred HHH-hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHH-----H-hhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 009975 443 EIT-CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV-----E-KTIRPCLVELTEDPDVDVRFFATQAIQS 513 (521)
Q Consensus 443 ~~~-~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~-----~-~~~~~~l~~l~~D~~~~vr~~a~~al~~ 513 (521)
-+. .-.++..++..+.++.+++|.+.-++|+.+..++....- . ..+.-.+.....+....+|..|.+-..+
T Consensus 408 l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~ 485 (501)
T PF13001_consen 408 LFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANA 485 (501)
T ss_pred cccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 331 245788899989999999999999999999988754221 1 1222233334456677777777665443
No 115
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.39 E-value=0.00065 Score=66.01 Aligned_cols=287 Identities=13% Similarity=0.126 Sum_probs=147.4
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHH
Q 009975 217 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 296 (521)
Q Consensus 217 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~ 296 (521)
..++...+- +..++..|...+..+....+. ..+..+..+..+++|.+..||..++..++.++..- ......+..+
T Consensus 26 ~~il~~~kg-~~k~K~Laaq~I~kffk~FP~--l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~--~~~v~kvaDv 100 (556)
T PF05918_consen 26 KEILDGVKG-SPKEKRLAAQFIPKFFKHFPD--LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN--PEHVSKVADV 100 (556)
T ss_dssp HHHHHGGGS--HHHHHHHHHHHHHHHCC-GG--GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHH
T ss_pred HHHHHHccC-CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH--HHHHhHHHHH
Confidence 334444443 467788888888888777654 23556777888888888889998888888887542 2345677888
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh------hhHHH
Q 009975 297 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG------FFDDK 370 (521)
Q Consensus 297 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~------~~~~~ 370 (521)
+.++|..+++..+..+-.+|..+...-....+ ..++..+... ...+..+|..++..+..-...++.+ .....
T Consensus 101 L~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL-~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~ 178 (556)
T PF05918_consen 101 LVQLLQTDDPVELDAVKNSLMSLLKQDPKGTL-TGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEF 178 (556)
T ss_dssp HHHHTT---HHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcCcHHHH-HHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHH
Confidence 88899888888877777777777664333222 2333333211 2345678888888776555444433 23456
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC---HHHHHhhhHHHHHhhh--cC----cchHHHHHHHHHHHH----hh
Q 009975 371 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMI--NN----PHYLYRMTILRAISL----LA 437 (521)
Q Consensus 371 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l--~~----~~~~~r~~a~~~l~~----l~ 437 (521)
+...+...|.|-..+-=...+..|..+- .++ .....+.+++.+.+.. .. .+...=...+.++.. +.
T Consensus 179 i~~~ikkvL~DVTaeEF~l~m~lL~~lk-~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs 257 (556)
T PF05918_consen 179 IVDEIKKVLQDVTAEEFELFMSLLKSLK-IYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFS 257 (556)
T ss_dssp HHHHHHHHCTT--HHHHHHHHHHHHTSG-G---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-B
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhCc-cccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhc
Confidence 7777778888733222122223333221 211 1223455666666432 11 122222223333333 33
Q ss_pred cccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhc------CCCCccHHHHHHHHH
Q 009975 438 PVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELT------EDPDVDVRFFATQAI 511 (521)
Q Consensus 438 ~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~------~D~~~~vr~~a~~al 511 (521)
.......|..++...++.-+++-....|...++++..++...+... ...++|.+..++ .+..++..+.-.+|+
T Consensus 258 ~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcL 336 (556)
T PF05918_consen 258 RGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECL 336 (556)
T ss_dssp TTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS----------HHHHHHH
T ss_pred CCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHH
Confidence 3333444556666666667777777889999999999999877655 344445544432 234555555555554
Q ss_pred H
Q 009975 512 Q 512 (521)
Q Consensus 512 ~ 512 (521)
-
T Consensus 337 L 337 (556)
T PF05918_consen 337 L 337 (556)
T ss_dssp H
T ss_pred H
Confidence 3
No 116
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.39 E-value=6.5e-05 Score=66.22 Aligned_cols=189 Identities=9% Similarity=0.091 Sum_probs=123.4
Q ss_pred chHHHHHHhcC-CChHHHHHHHHHhHHHHHhhhCHHHHHH--hhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHH
Q 009975 214 DLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAIQ--HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATI 290 (521)
Q Consensus 214 ~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~--~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~ 290 (521)
+-+..+..+++ ..++.++..+..+++..+.+.....+.. ..++.+..++.++++.+|..++.++..++.........
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 33455666665 4567888888888888666443332222 36788888899999999998988888887665443333
Q ss_pred HhHHHHHHHh-hc-CCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhC--hhh
Q 009975 291 EQLLPIFLSL-LK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGF 366 (521)
Q Consensus 291 ~~l~~~l~~~-l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~--~~~ 366 (521)
+..++.+.+. .. ..+.+++..++..|..+.-.-.........+|.+..++...+..+|..+++.+..++..-. .+.
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~L 171 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTREL 171 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHH
Confidence 3334444442 22 2367888888888888754333233335567888888888888899999888888876532 233
Q ss_pred hHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhC
Q 009975 367 FDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFG 402 (521)
Q Consensus 367 ~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~ 402 (521)
+....++.++.++... +.++...++..+..+...++
T Consensus 172 l~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~ 208 (254)
T PF04826_consen 172 LSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIK 208 (254)
T ss_pred HhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence 4444556666666653 56666667766666665554
No 117
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.38 E-value=0.0037 Score=62.82 Aligned_cols=490 Identities=13% Similarity=0.114 Sum_probs=247.8
Q ss_pred hhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhh----hcC-------
Q 009975 20 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHI----AYP------- 88 (521)
Q Consensus 20 ~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~----~~~------- 88 (521)
.++..|...+ +.|+++|..|...+..+...-+ +...+-....+ ++.....|..+...+.. .+.
T Consensus 5 ~ii~~L~~~l-s~d~~vr~~AE~~l~qle~~~~---f~~aL~~va~~--~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr 78 (1005)
T KOG2274|consen 5 AIIELLSGSL-SADQNVRSQAETQLKQLELTEG---FGVALAEVAAN--KDASLPLRQIALVLLKRYIEKHWSPNFEAFR 78 (1005)
T ss_pred HHHHHHHhhc-CCChhHHHHHHHHHhccccchH---HHHHHHHHHhC--cccCchHHHHHHHHHHHHHHHhCCChHhhcc
Confidence 3555665555 5789999999998877665322 22222211110 11233445444432221 111
Q ss_pred ---CCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 009975 89 ---SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK 165 (521)
Q Consensus 89 ---~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 165 (521)
+.+++.+..+...+.+++-+++..+|.+++.++..++..-- +..|++++|.+.+++.+.+..--..|.++|..+..
T Consensus 79 ~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~-Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ 157 (1005)
T KOG2274|consen 79 YPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDY-PDEWPELVPFILKLLSSGNENSIHGAMRVLAELSD 157 (1005)
T ss_pred CCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccC-chhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 12334566677777777778889999999999999886533 56799999999999998888888899999998876
Q ss_pred hcChhhhh---hhhHHHHH---HhcCCCChHHHHHHHH--HHHHHHHHhCC--Cc-------cccchHHHHHHhc-----
Q 009975 166 LLEPQDCV---AHILPVIV---NFSQDKSWRVRYMVAN--QLYELCEAVGP--EP-------TRMDLVPAYVRLL----- 223 (521)
Q Consensus 166 ~~~~~~~~---~~l~~~l~---~~~~d~~~~vR~~~~~--~l~~i~~~~~~--~~-------~~~~l~~~l~~~l----- 223 (521)
.+..+... +-.++-+. .+....+...|..++. .+......+.. +. ....+++.+...+
T Consensus 158 ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~ 237 (1005)
T KOG2274|consen 158 EVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQ 237 (1005)
T ss_pred HHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 65332111 11222222 2333344444444442 22222221110 00 0112233333222
Q ss_pred -CC-ChHHHHHHHHHhHHHHHhhhCHH--HHHHhhhHH------------HHHhc----------cCCcHH---HHHHH-
Q 009975 224 -RD-NEAEVRIAAAGKVTKFCRILNPE--LAIQHILPC------------VKELS----------SDSSQH---VRSAL- 273 (521)
Q Consensus 224 -~d-~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~------------l~~~~----------~d~~~~---vr~~~- 273 (521)
.+ .++..|...++++..+.+..+.- .+.....+. +..-. .|.++. +....
T Consensus 238 ~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i 317 (1005)
T KOG2274|consen 238 RNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVI 317 (1005)
T ss_pred ccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhh
Confidence 12 34567777778887777765431 111111111 11100 111111 11111
Q ss_pred --HHHHHccccccCh-HHH---HHhHHHHH------------------HHhhcCCC--hHHHHHHHHHHHHhhhhhchhh
Q 009975 274 --ASVIMGMAPLLGK-DAT---IEQLLPIF------------------LSLLKDEF--PDVRLNIISKLDQVNQVIGIDL 327 (521)
Q Consensus 274 --~~~l~~i~~~~~~-~~~---~~~l~~~l------------------~~~l~d~~--~~vr~~a~~~l~~~~~~~~~~~ 327 (521)
++.+..+....-- ... ..++++.+ .....|++ ..+|..+...+-.+...+|.+.
T Consensus 318 ~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~~~~ 397 (1005)
T KOG2274|consen 318 QIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDLLLEVITTFGNEG 397 (1005)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHHHHHHHHhccchh
Confidence 1111111111000 000 00111111 11122222 2456555555556665555433
Q ss_pred HhhhHHHH----HHH------HhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcC-CCcHHHHHHHHHHHHH
Q 009975 328 LSQSLLPA----IVE------LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKR 396 (521)
Q Consensus 328 ~~~~~~~~----l~~------~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~ 396 (521)
. ..+... +.. +.+...|....+.+.+.......-..+.....+...+...+. ...+..-..++.+++.
T Consensus 398 i-~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~ 476 (1005)
T KOG2274|consen 398 I-NPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISK 476 (1005)
T ss_pred h-hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHH
Confidence 2 111111 211 113345666666655554444111111112223333333332 2334444467777776
Q ss_pred HHHHh--CHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHH
Q 009975 397 LAEEF--GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 474 (521)
Q Consensus 397 l~~~~--~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~ 474 (521)
+.... ........+-..+.....+....+|..|++++...+..---..+.+.++..+.++..+....|=....++|+.
T Consensus 477 fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~ 556 (1005)
T KOG2274|consen 477 FSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSS 556 (1005)
T ss_pred HHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence 66552 2222222222233334566677889999998888774322233568889999999999898998899999988
Q ss_pred HHhhhchH---HHHhhHHHHHHHh--cCCCCccHHHHHHHHHHHHHHhh
Q 009975 475 LIPIVDQS---MVEKTIRPCLVEL--TEDPDVDVRFFATQAIQSIDHVM 518 (521)
Q Consensus 475 ~~~~~~~~---~~~~~~~~~l~~l--~~D~~~~vr~~a~~al~~l~~~~ 518 (521)
+++. .++ ...+.+.|....+ ....|+-|-..+...++.+.+.+
T Consensus 557 vv~~-dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~ 604 (1005)
T KOG2274|consen 557 VVKL-DPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA 604 (1005)
T ss_pred Hhcc-ChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 8764 332 2235566655542 23334477788888888777654
No 118
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=0.00062 Score=59.98 Aligned_cols=317 Identities=15% Similarity=0.173 Sum_probs=179.2
Q ss_pred HHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCc-------cccchHHHHHHhcCCChH
Q 009975 156 AVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-------TRMDLVPAYVRLLRDNEA 228 (521)
Q Consensus 156 a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~-------~~~~l~~~l~~~l~d~~~ 228 (521)
.+.++..+.+...+-...+.+.|.+...+..++..|+..+++.++.+......+. ....+++.+..++..++.
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 5556666655543333455677777777777777788888888777776554322 235788888889988899
Q ss_pred HHHHHHHHhHHHHHhhhCH-HHH-HHhhhH--HHHHhccCCcHHHHHHHHHHHHccccccC---hHHHHHhHHHHHHHhh
Q 009975 229 EVRIAAAGKVTKFCRILNP-ELA-IQHILP--CVKELSSDSSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLL 301 (521)
Q Consensus 229 ~vr~~a~~~l~~l~~~~~~-~~~-~~~~~~--~l~~~~~d~~~~vr~~~~~~l~~i~~~~~---~~~~~~~l~~~l~~~l 301 (521)
+|-++|++.+..++..-.. +.+ -..+.. .+..+....+.-+|....+.+-.+....+ .+...+-++..+..-+
T Consensus 143 eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaEl 222 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAEL 222 (524)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHh
Confidence 9999999999888764211 110 011111 11222233344456555555555543322 2333445666666555
Q ss_pred cC-CChHHHHHHHHHHHHhhhhh-chhhH-hhhHHHHHHHHh----cCCChHHHHHHHHHhHHHHhhhChhhhHH----H
Q 009975 302 KD-EFPDVRLNIISKLDQVNQVI-GIDLL-SQSLLPAIVELA----EDRHWRVRLAIIEYIPLLASQLGVGFFDD----K 370 (521)
Q Consensus 302 ~d-~~~~vr~~a~~~l~~~~~~~-~~~~~-~~~~~~~l~~~~----~~~~~~vr~~~~~~l~~l~~~~~~~~~~~----~ 370 (521)
+- .+.-|+..+++-...++..- |.+.+ .+.++..+.+.+ .|+....| .+..+.+.+|+....+ .
T Consensus 223 kGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfr-----almgfgkffgkeaimdvseea 297 (524)
T KOG4413|consen 223 KGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFR-----ALMGFGKFFGKEAIMDVSEEA 297 (524)
T ss_pred cCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHH-----HHHHHHHHhcchHHhhcCHHH
Confidence 54 56677888877777665432 22222 245666666654 33334443 3344555666543221 1
Q ss_pred H-------HHHHHHHcCCCcHHHHHHHHHHHHHHHHHh-CHHHHHhh---hHHHHHhhhcCcc-hHHHHHHHHHHHHhhc
Q 009975 371 L-------GALCMQWLQDKVYSIRDAAANNLKRLAEEF-GPEWAMQH---ITPQVLEMINNPH-YLYRMTILRAISLLAP 438 (521)
Q Consensus 371 l-------~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~~~~~---l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~ 438 (521)
+ +.-.+..+.-++++...+|+.++|.+.... |.+...+. -...+.....|.| -.-...++.++..++.
T Consensus 298 icealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 298 ICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred HHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence 1 112234456677888899999999887554 33322211 2222333333333 2345677777777775
Q ss_pred ccC--hHH--------------Hh-----h--cHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975 439 VMG--SEI--------------TC-----S--RLLPVVINASKDRVPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 439 ~~~--~~~--------------~~-----~--~il~~l~~~l~d~~~~VR~~a~~~l~~~~~ 477 (521)
... ++. |. . .=+..+...++.|.+.+|.++.+++..++.
T Consensus 378 elrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 378 ELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred cccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 321 111 10 0 112344556788899999999999988764
No 119
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=0.0014 Score=57.81 Aligned_cols=333 Identities=17% Similarity=0.186 Sum_probs=177.8
Q ss_pred hhhhhhcCCC-ChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch-------hhHHHHHHHHHHhhcCCChhH
Q 009975 81 GLFHIAYPSA-PDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA-------HLKTDIMSIFEDLTQDDQDSV 152 (521)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~-------~~~~~l~~~l~~l~~d~~~~v 152 (521)
..+..+++.. +-+....++|.++.-+..++..|+.-+++.++.+.+..... ....++++++......++..|
T Consensus 65 scLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeV 144 (524)
T KOG4413|consen 65 SCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEV 144 (524)
T ss_pred HHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHH
Confidence 4444444322 23356778888988888888999999999999998776531 235678999999999999999
Q ss_pred HHHHHHHHHHHhhhcCh-h-hhhhhhHHH--HHHhcCCCChHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCC
Q 009975 153 RLLAVEGCAALGKLLEP-Q-DCVAHILPV--IVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRD 225 (521)
Q Consensus 153 r~~a~~~l~~l~~~~~~-~-~~~~~l~~~--l~~~~~d~~~~vR~~~~~~l~~i~~~~~---~~~~~~~l~~~l~~~l~d 225 (521)
..+|++.+..++..-.. + .+...+..- +..+..--+.-+|..+.+.+.++....+ .+...+.++..+..-++.
T Consensus 145 AkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkG 224 (524)
T KOG4413|consen 145 AKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKG 224 (524)
T ss_pred HHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcC
Confidence 99999999988754111 0 001111111 1111122244566667766666554322 223346677777766654
Q ss_pred -ChHHHHHHHHHhHHHHHhhh-CH-----HHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHH--------
Q 009975 226 -NEAEVRIAAAGKVTKFCRIL-NP-----ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATI-------- 290 (521)
Q Consensus 226 -~~~~vr~~a~~~l~~l~~~~-~~-----~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~-------- 290 (521)
++.-|+..+++....++..- |. +...+.+...+...-+|+..+.|. +..+.+.+|+...+
T Consensus 225 teDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfra-----lmgfgkffgkeaimdvseeaic 299 (524)
T KOG4413|consen 225 TEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRA-----LMGFGKFFGKEAIMDVSEEAIC 299 (524)
T ss_pred CcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHH-----HHHHHHHhcchHHhhcCHHHHH
Confidence 66678888888888877653 22 222233333333333455555443 22333334443322
Q ss_pred HhH---HHHHHHhhcCCChHHHHHHHHHHHHhhhhh-chhhHhhhHHHHHHH---HhcCCChH-HHHHHHHHhHHHHhhh
Q 009975 291 EQL---LPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDLLSQSLLPAIVE---LAEDRHWR-VRLAIIEYIPLLASQL 362 (521)
Q Consensus 291 ~~l---~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~l~~---~~~~~~~~-vr~~~~~~l~~l~~~~ 362 (521)
+.+ +.-.+.+....++.....|+.+++.+.... |.+.+...--|.... ...|.+.. -..+++.++..++...
T Consensus 300 ealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 300 EALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGEL 379 (524)
T ss_pred HHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccc
Confidence 111 122234455566777777777777766543 333222211122221 12222222 2233344444443332
Q ss_pred ChhhhHHHHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHhCHHHHHhhh--HHHHHhhhcCcchHHHHHHHHHHHHhhc
Q 009975 363 GVGFFDDKLGALCMQWLQDKVYS--IRDAAANNLKRLAEEFGPEWAMQHI--TPQVLEMINNPHYLYRMTILRAISLLAP 438 (521)
Q Consensus 363 ~~~~~~~~l~~~l~~~l~d~~~~--vr~~a~~~l~~l~~~~~~~~~~~~l--~~~l~~~l~~~~~~~r~~a~~~l~~l~~ 438 (521)
.... +-..|.... .|.....+.+. ...+ ...+...++.+.+.+|.+++..+..++.
T Consensus 380 rlkp----------eqitDgkaeerlrclifdaaaq----------stkldPleLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 380 RLKP----------EQITDGKAEERLRCLIFDAAAQ----------STKLDPLELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred cCCh----------hhccccHHHHHHHHHHHHHHhh----------ccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 2110 111232222 22221111111 1111 2344556778889999999999999885
No 120
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.37 E-value=0.0014 Score=63.75 Aligned_cols=283 Identities=14% Similarity=0.161 Sum_probs=151.3
Q ss_pred ChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChH
Q 009975 149 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA 228 (521)
Q Consensus 149 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~ 228 (521)
+...+..|...+....+.+++ ....-+..+..+|+|.+..||..+++.|..+++.-+ .....+..++.+++..+++
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~--l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~--~~v~kvaDvL~QlL~tdd~ 110 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPD--LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP--EHVSKVADVLVQLLQTDDP 110 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GG--GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---H
T ss_pred CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH--HHHhHHHHHHHHHHhcccH
Confidence 567888999999999988854 566788889999999999999999999999886422 2346789999999998888
Q ss_pred HHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh------HHHHHhHHHHHHHhhc
Q 009975 229 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK------DATIEQLLPIFLSLLK 302 (521)
Q Consensus 229 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~------~~~~~~l~~~l~~~l~ 302 (521)
....++-.+|..+... ++......++..+..- ...+..+|.-++..+..-...++. +...+.++..+.+.++
T Consensus 111 ~E~~~v~~sL~~ll~~-d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~ 188 (556)
T PF05918_consen 111 VELDAVKNSLMSLLKQ-DPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQ 188 (556)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHH
Confidence 8888888888777764 3333333333333211 134567888888777543222221 3345677888888888
Q ss_pred CCChHHHHHHHHHHHHhhh---hhchhhHhhhHHHHHHHHhc------CCChHHHHHHHHHh----HHHHhhhChhhhHH
Q 009975 303 DEFPDVRLNIISKLDQVNQ---VIGIDLLSQSLLPAIVELAE------DRHWRVRLAIIEYI----PLLASQLGVGFFDD 369 (521)
Q Consensus 303 d~~~~vr~~a~~~l~~~~~---~~~~~~~~~~~~~~l~~~~~------~~~~~vr~~~~~~l----~~l~~~~~~~~~~~ 369 (521)
|-..+-=......|..+-- .-... -.+.+++.+.+... ..+...-..++.++ ..+........|..
T Consensus 189 DVTaeEF~l~m~lL~~lk~~~~~~t~~-g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~ 267 (556)
T PF05918_consen 189 DVTAEEFELFMSLLKSLKIYGGKQTIE-GRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVN 267 (556)
T ss_dssp T--HHHHHHHHHHHHTSGG---GSSHH-HHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHH
T ss_pred hccHHHHHHHHHHHHhCccccccCChH-HHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHH
Confidence 8543222222233332211 11111 12456666665331 12222222333333 33333333333444
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhc------Cc----chHHHHHHHHHHHHhhcc
Q 009975 370 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN------NP----HYLYRMTILRAISLLAPV 439 (521)
Q Consensus 370 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------~~----~~~~r~~a~~~l~~l~~~ 439 (521)
++..-++..+.+-..+.|...++.++.++...|... ...++|.+.+.+. .. ++..-++.+.++..++..
T Consensus 268 y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k 346 (556)
T PF05918_consen 268 YMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARK 346 (556)
T ss_dssp HHHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhh
Confidence 443333334455566778888999999988877544 4445555554432 11 345556666666666653
No 121
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.36 E-value=5.4e-05 Score=69.76 Aligned_cols=187 Identities=15% Similarity=0.203 Sum_probs=108.0
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc---hhhHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHhhhcChh
Q 009975 95 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQ 170 (521)
Q Consensus 95 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~ 170 (521)
...+...+.++-.++...-|+.|...|..+...-+. +.+..+|+..+.+.+.| .++..|..|.+.|..++..-+..
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~ 364 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR 364 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence 345556666666666667788888777776644322 23344556666666666 77888999999999888775432
Q ss_pred --hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH
Q 009975 171 --DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE 248 (521)
Q Consensus 171 --~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 248 (521)
++....+.-+++...|....|-..|.+....++....+..-...+.|.+.. .+...-.++++.+..+.+.+..+
T Consensus 365 l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~E 440 (516)
T KOG2956|consen 365 LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAE 440 (516)
T ss_pred hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHH
Confidence 122223333444555666655555666544444433332222223333333 23344456666777777766655
Q ss_pred H---HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccC
Q 009975 249 L---AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG 285 (521)
Q Consensus 249 ~---~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~ 285 (521)
. ..+.+.|.+.+..++.+..||..++.|+..+...+|
T Consensus 441 eL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 441 ELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred HHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh
Confidence 3 234456666666666666666666666666665555
No 122
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=98.33 E-value=0.00077 Score=74.82 Aligned_cols=289 Identities=12% Similarity=0.159 Sum_probs=173.7
Q ss_pred HHHHHHhHHHHHHhhCc------hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh-hh-----hhhhhHHHHH
Q 009975 114 RRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QD-----CVAHILPVIV 181 (521)
Q Consensus 114 r~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~-----~~~~l~~~l~ 181 (521)
|......|..++...-. ..+|..+.+.+.......+..++..|+..|..++-.+-+ ++ ..++++..+.
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence 55555555555543322 235566777777765556678999999999998876443 22 2233443333
Q ss_pred H-hcCCCChHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh----CH--HHHHH
Q 009975 182 N-FSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL----NP--ELAIQ 252 (521)
Q Consensus 182 ~-~~~d~~~~vR~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~~--~~~~~ 252 (521)
. +.+..+..+|..+.+++.++....+... .|..++.++.....|+++.+-..|.+++..+.... .. .....
T Consensus 1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~ 1268 (1780)
T PLN03076 1189 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT 1268 (1780)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH
Confidence 3 4556788999999999999987666433 46788888888888888888888888887665431 11 12334
Q ss_pred hhhHHHHHhccCC-cHHHHHHHHHHHHcccccc-----------------------------------ChHHHHHhHHHH
Q 009975 253 HILPCVKELSSDS-SQHVRSALASVIMGMAPLL-----------------------------------GKDATIEQLLPI 296 (521)
Q Consensus 253 ~~~~~l~~~~~d~-~~~vr~~~~~~l~~i~~~~-----------------------------------~~~~~~~~l~~~ 296 (521)
.++..+.++.... +..+-..++..+..++..+ +.+.....++|.
T Consensus 1269 DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pL 1348 (1780)
T PLN03076 1269 DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPL 1348 (1780)
T ss_pred HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence 4555555554322 1222222222222111000 111112346666
Q ss_pred HHHh---hcCCChHHHHHHHHHHHHhhhhhchh----h----HhhhHHHHHHHHhc----------------------C-
Q 009975 297 FLSL---LKDEFPDVRLNIISKLDQVNQVIGID----L----LSQSLLPAIVELAE----------------------D- 342 (521)
Q Consensus 297 l~~~---l~d~~~~vr~~a~~~l~~~~~~~~~~----~----~~~~~~~~l~~~~~----------------------~- 342 (521)
+..+ ..|+.++||..|+..|-.+....|.. . +...++|.+..+-. +
T Consensus 1349 L~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 1428 (1780)
T PLN03076 1349 LAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQ 1428 (1780)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhh
Confidence 6544 67999999999999998888776632 2 22345666544321 0
Q ss_pred CChHHHHHHHHHhHHHHhhhCh-----hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH
Q 009975 343 RHWRVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 403 (521)
Q Consensus 343 ~~~~vr~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 403 (521)
..| ....+..++..+...+.. ....+.++.++..++..++..+-..+..|+..++...|.
T Consensus 1429 ~~W-l~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076 1429 DAW-LYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence 112 244455555555444332 123455666667777888888888899999999877764
No 123
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.30 E-value=0.0049 Score=62.10 Aligned_cols=150 Identities=13% Similarity=0.125 Sum_probs=122.3
Q ss_pred hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhh---HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC
Q 009975 326 DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 402 (521)
Q Consensus 326 ~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 402 (521)
+.+...+.|.+.+......-..|...+..++.+..+++.+.. .+.++|++++.+.=++..||..+..++..+....+
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 344578899998887766667888889999999888887643 46789999999999999999999999988876554
Q ss_pred H--HHHHhhhHHHHHhhhcCcc---hHHHHHHHHHHHHhhcccChHH---HhhcHHHHHHhhcCCCCchHHHHHHHHHHH
Q 009975 403 P--EWAMQHITPQVLEMINNPH---YLYRMTILRAISLLAPVMGSEI---TCSRLLPVVINASKDRVPNIKFNVAKVLQS 474 (521)
Q Consensus 403 ~--~~~~~~l~~~l~~~l~~~~---~~~r~~a~~~l~~l~~~~~~~~---~~~~il~~l~~~l~d~~~~VR~~a~~~l~~ 474 (521)
. ......++|.+..+-.|.+ -.+|..|+.+++.+....+... |.+.++..+.+.|+|+...||..|.++=+.
T Consensus 942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 2 2345779999998877766 4699999999999998666554 567899999999999999999999887544
Q ss_pred H
Q 009975 475 L 475 (521)
Q Consensus 475 ~ 475 (521)
.
T Consensus 1022 W 1022 (1030)
T KOG1967|consen 1022 W 1022 (1030)
T ss_pred h
Confidence 3
No 124
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=0.0026 Score=63.35 Aligned_cols=197 Identities=16% Similarity=0.179 Sum_probs=130.7
Q ss_pred hhhHHhhhhcCchhHHHHHHHHHHHHHHhhc--ChhH-----HHHhHHHHHHHhhcCC-CCcchhhhhhhhhhhcCCCCh
Q 009975 21 LLPPLETLCTVEETCVRDKAVESLCRIGSQM--RESD-----LVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPD 92 (521)
Q Consensus 21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~--~~~~-----~~~~l~p~i~~~~~~~-~~~~r~~~~~~~~~~~~~~~~ 92 (521)
+-.+|+.+....|+...-.+ +.++|+.+ +.+. -.+.++|.+..+..++ ++++...||+.+..++..+|+
T Consensus 169 ~kkLL~gL~~~~Des~Qlea---l~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEA---LTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred HHHHHHhccccCChHHHHHH---HHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 45566677666676555444 44555543 2222 2368889998888754 678888899888888776665
Q ss_pred H----HHHHHHHHHH-HhcCCCChHHHHHHHHhHHHHHHhhCchhhHH----HHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 009975 93 I----LKTELRSIYT-QLCQDDMPMVRRSAASNLGKFAATVEPAHLKT----DIMSIFEDLTQDDQDSVRLLAVEGCAAL 163 (521)
Q Consensus 93 ~----~~~~l~~~l~-~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~----~l~~~l~~l~~d~~~~vr~~a~~~l~~l 163 (521)
. +..-.+|.++ ++..-.--.|-+.+.++|..+.+..+...... ..+.++.-+ .-.+.+.|+.+-.+.
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFF----Si~aQR~AlaiaaN~ 321 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFF----SIHAQRVALAIAANC 321 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4 2223555444 45544556789999999999988776543322 222222222 224577788888899
Q ss_pred hhhcChhh--hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcc------ccchHHHHHHhcC
Q 009975 164 GKLLEPQD--CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT------RMDLVPAYVRLLR 224 (521)
Q Consensus 164 ~~~~~~~~--~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~------~~~l~~~l~~~l~ 224 (521)
++.+.++. ..-+.+|++..+++..+.+.-..++-++.++++.+.+... ..+++.-..+++.
T Consensus 322 Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLls 390 (1051)
T KOG0168|consen 322 CKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLS 390 (1051)
T ss_pred HhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHh
Confidence 99888764 3455889999999988888888899999999987764432 2456666666654
No 125
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.28 E-value=0.0062 Score=61.28 Aligned_cols=212 Identities=13% Similarity=0.072 Sum_probs=135.2
Q ss_pred CChHHHHHHHHHHHHhhhh--hchhhHhhhHHHHHHH-HhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcC
Q 009975 304 EFPDVRLNIISKLDQVNQV--IGIDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ 380 (521)
Q Consensus 304 ~~~~vr~~a~~~l~~~~~~--~~~~~~~~~~~~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 380 (521)
..|..-..+..+++.+... ..+..+ ..++..... +..|..+.+|..++..+...++.---..+.+.++..+.++..
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas 540 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLAS 540 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcc
Confidence 3455555677777766554 222222 222222222 346777788888888777666332223456778888899999
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCHH--HHHhhhHHHHHhhh--cCcchHHHHHHHHHHHHhhcccC-hHHHhhcHHHHHHh
Q 009975 381 DKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMI--NNPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVIN 455 (521)
Q Consensus 381 d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l--~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~il~~l~~ 455 (521)
+...+|-...+++|..+++.-... .....+.|.+.... .+.++.+-..+-.++..+.+... -....+.++|.+++
T Consensus 541 ~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslis 620 (1005)
T KOG2274|consen 541 KSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLIS 620 (1005)
T ss_pred cccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 999999999999988887543221 12356677666532 22345666666777777765211 11245788999988
Q ss_pred hcCCCC----chHHHHHHHHHHHHHhhhch---HHHHhhHHHHHHHh-cCCCCccHHHHHHHHHHHHHH
Q 009975 456 ASKDRV----PNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVEL-TEDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 456 ~l~d~~----~~VR~~a~~~l~~~~~~~~~---~~~~~~~~~~l~~l-~~D~~~~vr~~a~~al~~l~~ 516 (521)
.+.-+. +..-..++..|..+....++ +-+..+.+|.+.++ +...|..+-.++.+|+..+..
T Consensus 621 il~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 621 VLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 877665 55566777888877776543 34457888988884 555677778888888887653
No 126
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.0002 Score=71.07 Aligned_cols=178 Identities=20% Similarity=0.191 Sum_probs=130.6
Q ss_pred HHhccCCcHHHHHHHHHHHHccccccCh--HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHH
Q 009975 259 KELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI 336 (521)
Q Consensus 259 ~~~~~d~~~~vr~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l 336 (521)
...+.|+...+|..++..+..+++...+ -...+.++.++...++|.++.|-.+|++.+..++.... +.++|.+
T Consensus 733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----e~il~dL 807 (982)
T KOG4653|consen 733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----EDILPDL 807 (982)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----hhhHHHH
Confidence 3345677778888888888887763322 23356789999999999999999999998888887644 6677777
Q ss_pred HH-HhcC---CChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC---HHHHH
Q 009975 337 VE-LAED---RHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAM 407 (521)
Q Consensus 337 ~~-~~~~---~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~ 407 (521)
.+ +.+. .....|..+.+++..++...|+= .+.+.+...++....|++..-|.+++.++|.++.... .+++.
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ 887 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH 887 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH
Confidence 66 3222 22455666678888888888873 3445677888888899999999999999999987653 44433
Q ss_pred hhhHHHHHhh-hcCcchHHHHHHHHHHHHhhcccCh
Q 009975 408 QHITPQVLEM-INNPHYLYRMTILRAISLLAPVMGS 442 (521)
Q Consensus 408 ~~l~~~l~~~-l~~~~~~~r~~a~~~l~~l~~~~~~ 442 (521)
+++..+... -.|....+|.+|+..+..+....|.
T Consensus 888 -ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~ 922 (982)
T KOG4653|consen 888 -EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE 922 (982)
T ss_pred -HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccch
Confidence 344444443 3567788999999999999887664
No 127
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=0.00041 Score=68.91 Aligned_cols=221 Identities=13% Similarity=0.125 Sum_probs=155.2
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhhhhchh--hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHH
Q 009975 294 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 371 (521)
Q Consensus 294 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 371 (521)
+......+.|+...+|..++..+..+++.-.+. ...+.++....+.++|.+.-|--.++..+..+++..++ .+
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e-----~i 803 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE-----DI 803 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-----hh
Confidence 444556678888999999999999988733222 12367888899999999998888888888788876444 46
Q ss_pred HHHHHH-HcC--C-CcHHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccC---h
Q 009975 372 GALCMQ-WLQ--D-KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---S 442 (521)
Q Consensus 372 ~~~l~~-~l~--d-~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~---~ 442 (521)
+|.+.. +.+ + +..+.|...-+++..++...|+-. +...++..++....+|+-..|..++..+|.++.... .
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vs 883 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVS 883 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhh
Confidence 666654 322 2 224555556688888888887643 345678888888889999999999999999987432 4
Q ss_pred HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHH---hhHHHHHH----HhcCCCCccHHHHHHHHHHHHH
Q 009975 443 EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE---KTIRPCLV----ELTEDPDVDVRFFATQAIQSID 515 (521)
Q Consensus 443 ~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~---~~~~~~l~----~l~~D~~~~vr~~a~~al~~l~ 515 (521)
+++.+-+-..+.-.-.|+...||.+|+..+..+....|.+... ..+..... ..-.+++..+|..|..++..+.
T Consensus 884 d~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 884 DFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 4444444444444566889999999999999998877743221 11112111 2345677789999999999988
Q ss_pred Hhhc
Q 009975 516 HVMM 519 (521)
Q Consensus 516 ~~~~ 519 (521)
..+.
T Consensus 964 a~l~ 967 (982)
T KOG4653|consen 964 AALE 967 (982)
T ss_pred HHHH
Confidence 7664
No 128
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.21 E-value=0.00037 Score=64.52 Aligned_cols=181 Identities=13% Similarity=0.138 Sum_probs=125.4
Q ss_pred hcCCChHHHHHHHHHHHHhhhhhchh---hHhhhHHHHHHHHhcC-CChHHHHHHHHHhHHHHhhhChhhhHH--HHHHH
Q 009975 301 LKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDD--KLGAL 374 (521)
Q Consensus 301 l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~--~l~~~ 374 (521)
-.++..+-|..|+..+..+...-+.. .....++-.+.+.+.| .+...|..++..|..+++.-+...+.. ..+--
T Consensus 296 ~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K 375 (516)
T KOG2956|consen 296 SGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICK 375 (516)
T ss_pred cCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHH
Confidence 33445677888888777765432221 1235667777777777 888999999999999998876654432 22333
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH---HhhcHHH
Q 009975 375 CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---TCSRLLP 451 (521)
Q Consensus 375 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~---~~~~il~ 451 (521)
++..-+|.++.|-..|.+....+....-+..-...+.|.+. ..++..-..++..+.++++.+..+. ..+.+.|
T Consensus 376 ~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Il----t~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP 451 (516)
T KOG2956|consen 376 VLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLIL----TADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAP 451 (516)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHh----cCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhh
Confidence 45666788877766666665555544432222233344333 3556666778889999998888765 3578999
Q ss_pred HHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHH
Q 009975 452 VVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE 485 (521)
Q Consensus 452 ~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~ 485 (521)
.+++..+.....||..++.||-.+...+|.+.+.
T Consensus 452 ~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~me 485 (516)
T KOG2956|consen 452 CVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEME 485 (516)
T ss_pred HHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhh
Confidence 9999999999999999999999999998865443
No 129
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.16 E-value=0.0026 Score=58.32 Aligned_cols=204 Identities=15% Similarity=0.134 Sum_probs=136.1
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhhh-hchhhH---hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhC----hhhh
Q 009975 296 IFLSLLKDEFPDVRLNIISKLDQVNQV-IGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGFF 367 (521)
Q Consensus 296 ~l~~~l~d~~~~vr~~a~~~l~~~~~~-~~~~~~---~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~----~~~~ 367 (521)
-.+..+.+.....|..++..+..+... .-++.+ ...+++.+...++.....-+..++.+++.++-.+| .+.+
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 334445666688888888888776532 222222 24567777776666655666777788888887766 2345
Q ss_pred HHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHHHHhCHHH-HHhhhHHHHH---h--hhc----------CcchHHHHHH
Q 009975 368 DDKLGALCMQWLQDKV--YSIRDAAANNLKRLAEEFGPEW-AMQHITPQVL---E--MIN----------NPHYLYRMTI 429 (521)
Q Consensus 368 ~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~---~--~l~----------~~~~~~r~~a 429 (521)
.+.+.|.+...+.|.. ..+|.+++.+|+.+.-..+.+. -....+..+. . ..+ .++..+..+|
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 5678888888888854 4678888888888765544331 1221222222 1 111 1236789999
Q ss_pred HHHHHHhhcccChHH---HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch---H---HHHhhHHHHHHHhcCCC
Q 009975 430 LRAISLLAPVMGSEI---TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---S---MVEKTIRPCLVELTEDP 499 (521)
Q Consensus 430 ~~~l~~l~~~~~~~~---~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~---~---~~~~~~~~~l~~l~~D~ 499 (521)
+.+.+-+...++... ..+..+|.+..+|..++..||.+|.++|..+.+.... + ...+.+...+..|.+|.
T Consensus 207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~dS 285 (309)
T PF05004_consen 207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATDS 285 (309)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHhc
Confidence 999999988777633 3456789999999999999999999999999876432 1 12366777777777765
No 130
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.0064 Score=59.42 Aligned_cols=182 Identities=19% Similarity=0.162 Sum_probs=124.9
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhhhc--Ch---hhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccc-
Q 009975 139 SIFEDLTQDDQDSVRLLAVEGCAALGKLL--EP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR- 212 (521)
Q Consensus 139 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~--~~---~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~- 212 (521)
.++.+.+.-+...+-...-+.++.+...- .+ +......-|++...++-++..||..|+..+-.+....+++...
T Consensus 133 ~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e 212 (1005)
T KOG1949|consen 133 DFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAE 212 (1005)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHH
Confidence 34444444444344444445566655432 11 1222335577888889999999999999988776665655432
Q ss_pred ------cchHHHHHHhcCCChHHHHHHHHHhHHH----HHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHcccc
Q 009975 213 ------MDLVPAYVRLLRDNEAEVRIAAAGKVTK----FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 282 (521)
Q Consensus 213 ------~~l~~~l~~~l~d~~~~vr~~a~~~l~~----l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~ 282 (521)
+.=...+..+++|+-+.||..|...+.. +.+.+++..+.+-+-..+-.+..|....||-+..+++..+..
T Consensus 213 ~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~ 292 (1005)
T KOG1949|consen 213 EMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD 292 (1005)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc
Confidence 1233456678999999999988776554 444556665444333444556678888999999999998876
Q ss_pred ccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 009975 283 LLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 320 (521)
Q Consensus 283 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 320 (521)
.-......+.++|.+-..+.|....||-++..-+..+-
T Consensus 293 np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 293 NPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred CccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 65556668899999999999999999999888776653
No 131
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.08 E-value=7.1e-06 Score=53.65 Aligned_cols=52 Identities=21% Similarity=0.134 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHhhcccCh--HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHH
Q 009975 423 YLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDRVPNIKFNVAKVLQS 474 (521)
Q Consensus 423 ~~~r~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~ 474 (521)
|++|..++.+|+.++...+. ..+.+.++|.+..+++|+++.||.+|+.+|+.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 45566666666655433222 12345555666666666666666666666554
No 132
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.07 E-value=0.0015 Score=69.76 Aligned_cols=325 Identities=14% Similarity=0.109 Sum_probs=175.2
Q ss_pred hhhcCchhHHHHHHHHHHHHHHhhcChh---------HHHHhHHHHHHHhhc--CCCCcchhhhhhhhh-----hhcC-C
Q 009975 27 TLCTVEETCVRDKAVESLCRIGSQMRES---------DLVDWYIPLVKRLAA--GEWFTARVSACGLFH-----IAYP-S 89 (521)
Q Consensus 27 ~l~~~~~~~vR~~a~~~l~~i~~~~~~~---------~~~~~l~p~i~~~~~--~~~~~~r~~~~~~~~-----~~~~-~ 89 (521)
.+++++|..||.-..-++.+|...+.|+ ++...++..+..+.+ ++.+..+...+.-+. .++. .
T Consensus 57 ~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~ 136 (1266)
T KOG1525|consen 57 FLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLE 136 (1266)
T ss_pred HHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeecc
Confidence 3678999999998888999999887653 223333333333333 223323322221111 1111 1
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHH-Hhhc---CCChhHHHHHHHHHHHHhh
Q 009975 90 APDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFE-DLTQ---DDQDSVRLLAVEGCAALGK 165 (521)
Q Consensus 90 ~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~-~l~~---d~~~~vr~~a~~~l~~l~~ 165 (521)
..++...+++.++..+..++.+..-......+..+.... +....+++.++. ++.. ++...-+..|-.++...+.
T Consensus 137 d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~--d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~ 214 (1266)
T KOG1525|consen 137 DCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEE--DTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCAD 214 (1266)
T ss_pred chHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhh
Confidence 223367777888888775554433333333333333222 234444444443 3333 3333445555555555555
Q ss_pred hcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh
Q 009975 166 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 245 (521)
Q Consensus 166 ~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 245 (521)
++.+. ..+++...+..... .-..++....+.+-++-...++. ...++|.+..-+..++..+|..|...++.+....
T Consensus 215 ~~~~~-i~~f~~~~~~~~~s-~~~~~~~~~he~i~~L~~~~p~l--l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~ 290 (1266)
T KOG1525|consen 215 NLEDT-IANFLNSCLTEYKS-RQSSLKIKYHELILELWRIAPQL--LLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDK 290 (1266)
T ss_pred hhchh-HHHHHHHHHhhccc-cccchhhHHHHHHHHHHHhhHHH--HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc
Confidence 44322 33334333333221 11223333444444443322211 2357888888788888899999999999987754
Q ss_pred CHHHH--HHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHH--hhh
Q 009975 246 NPELA--IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ--VNQ 321 (521)
Q Consensus 246 ~~~~~--~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~--~~~ 321 (521)
+..-. .+.++..+...+.|.+..||..+++....+.-..+.- .+.....+.....|.++.+|......+.. +..
T Consensus 291 ~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~--~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~ 368 (1266)
T KOG1525|consen 291 DSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSI--AKASTILLALRERDLDEDVRVRTQVVIVACDVMK 368 (1266)
T ss_pred hhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchh--hhHHHHHHHHHhhcCChhhhheeeEEEEEeehhH
Confidence 33222 3456777788889999999999998887765432221 12222222223345555555443222221 111
Q ss_pred hhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhh
Q 009975 322 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 361 (521)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 361 (521)
+..... ..++....+.+.|+.|.||..++.-+..+.+.
T Consensus 369 -~~l~~~-~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 369 -FKLVYI-PLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred -hhhhhh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 111111 22566667778999999999999999988874
No 133
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=98.05 E-value=0.013 Score=56.11 Aligned_cols=221 Identities=15% Similarity=0.157 Sum_probs=142.7
Q ss_pred HHHHHHhhcChhHHHHhHHHHHHHhhc---CCCCcchhhhhhhhhhhc----CCCCh--HHHHHHHHHHHHhcCCCChHH
Q 009975 43 SLCRIGSQMRESDLVDWYIPLVKRLAA---GEWFTARVSACGLFHIAY----PSAPD--ILKTELRSIYTQLCQDDMPMV 113 (521)
Q Consensus 43 ~l~~i~~~~~~~~~~~~l~p~i~~~~~---~~~~~~r~~~~~~~~~~~----~~~~~--~~~~~l~~~l~~l~~~~~~~v 113 (521)
.+..+.+....+.+...++..+..... ++...-|. ..++..++ +..|+ +....++..+...+..++..|
T Consensus 30 ~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRi--l~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~V 107 (885)
T COG5218 30 SLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRI--LSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKV 107 (885)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHH--HHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhH
Confidence 444555555555566666655544333 33333332 23333333 23333 245566666777778889999
Q ss_pred HHHHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhc-CCCChH
Q 009975 114 RRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS-QDKSWR 190 (521)
Q Consensus 114 r~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~d~~~~ 190 (521)
|...++.|..++..+++ +...+.++.-+..-+-|-.+.||..|+.+|..+-+.-..+ ...+..++.... +|++.+
T Consensus 108 R~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne--en~~~n~l~~~vqnDPS~E 185 (885)
T COG5218 108 RKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE--ENRIVNLLKDIVQNDPSDE 185 (885)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHhcCcHHH
Confidence 99999999999988886 6677778887888888999999999999999887554332 345556666544 589999
Q ss_pred HHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHH-HHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHH
Q 009975 191 VRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIA-AAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHV 269 (521)
Q Consensus 191 vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~-a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~v 269 (521)
||+.+.-.+.. .+.-.|.+.+-..|-+...|+. -..+|..++....-. +.+.+. .+...+.|.+..|
T Consensus 186 VRr~allni~v----------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~ls-i~kri~-l~ewgl~dRe~sv 253 (885)
T COG5218 186 VRRLALLNISV----------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLS-IDKRIL-LMEWGLLDREFSV 253 (885)
T ss_pred HHHHHHHHeee----------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhcc-ccceeh-hhhhcchhhhhhH
Confidence 99988765531 2445688888888877655554 355677766543211 112222 4555667788888
Q ss_pred HHHHHHHHHc
Q 009975 270 RSALASVIMG 279 (521)
Q Consensus 270 r~~~~~~l~~ 279 (521)
|.+++.++..
T Consensus 254 ~~a~~d~ia~ 263 (885)
T COG5218 254 KGALVDAIAS 263 (885)
T ss_pred HHHHHHHHHH
Confidence 8887776653
No 134
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.05 E-value=0.0017 Score=59.52 Aligned_cols=181 Identities=21% Similarity=0.202 Sum_probs=126.5
Q ss_pred HhcCCChHHHHHHHHHhHHHHhh-hChhhh---HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC----HHHHHhhh
Q 009975 339 LAEDRHWRVRLAIIEYIPLLASQ-LGVGFF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG----PEWAMQHI 410 (521)
Q Consensus 339 ~~~~~~~~vr~~~~~~l~~l~~~-~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~l 410 (521)
.+.++....|..++..+..+... +-.+.+ ...+++.+.+.++-....-+..|+.+++.++-.+| .+.+.+.+
T Consensus 51 ~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~ 130 (309)
T PF05004_consen 51 LLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEEL 130 (309)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Confidence 34566788999988887766533 333333 24477888888887766667788889999888866 23455778
Q ss_pred HHHHHhhhcCcc--hHHHHHHHHHHHHhhcccChHH-Hhh---cHHHHHHhh--c-CC---------CCchHHHHHHHHH
Q 009975 411 TPQVLEMINNPH--YLYRMTILRAISLLAPVMGSEI-TCS---RLLPVVINA--S-KD---------RVPNIKFNVAKVL 472 (521)
Q Consensus 411 ~~~l~~~l~~~~--~~~r~~a~~~l~~l~~~~~~~~-~~~---~il~~l~~~--l-~d---------~~~~VR~~a~~~l 472 (521)
.|.|...+.|.. ...|..++.+++.+.-..+.+. -.. ..+..++.. . .| +++.|..+|+.++
T Consensus 131 ~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW 210 (309)
T PF05004_consen 131 KPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAW 210 (309)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHH
Confidence 889988888754 5678888888887665333221 122 344433332 1 12 2357999999999
Q ss_pred HHHHhhhchHHH---HhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975 473 QSLIPIVDQSMV---EKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 519 (521)
Q Consensus 473 ~~~~~~~~~~~~---~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~ 519 (521)
+.+...++...+ ....+|.|..++..++.+||..|..++.-|-+...
T Consensus 211 ~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 211 ALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 999988776433 35578888888899999999999999998876543
No 135
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.02 E-value=2.4e-05 Score=51.14 Aligned_cols=53 Identities=26% Similarity=0.308 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHccccccCh--HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 009975 267 QHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 319 (521)
Q Consensus 267 ~~vr~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 319 (521)
|.||..++.+++.++...+. ......++|.+..+++|+++.||..|+.+|+.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 67888888888887655544 234567888888888888888888888888753
No 136
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.97 E-value=0.028 Score=57.13 Aligned_cols=145 Identities=16% Similarity=0.082 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHh-cCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHH
Q 009975 307 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYS 385 (521)
Q Consensus 307 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~ 385 (521)
-+|..+.-++++++- ..+.+.+..+|.+.+-+ ......+|..++-+++.++..... ..+.-+|.+-..|.|+.+-
T Consensus 946 ~vra~~vvTlakmcL--ah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa--m~d~YiP~I~~~L~Dp~~i 1021 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCL--AHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA--MTDRYIPMIAASLCDPSVI 1021 (1529)
T ss_pred HHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH--HHHHhhHHHHHHhcCchHH
Confidence 456667777777663 33445567888886644 345567788777777777655322 2456778888999999999
Q ss_pred HHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhh
Q 009975 386 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINA 456 (521)
Q Consensus 386 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~ 456 (521)
||+.++-.|..+..- |.-.+...++=.++..+-|.+..+|.-+=.+++.+...-.+..|...++..++.+
T Consensus 1022 VRrqt~ilL~rLLq~-~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~~l 1091 (1529)
T KOG0413|consen 1022 VRRQTIILLARLLQF-GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYIIAL 1091 (1529)
T ss_pred HHHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHH
Confidence 999999999888742 2222334455556666778899999999999999988666666666666666543
No 137
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.97 E-value=0.0045 Score=55.17 Aligned_cols=226 Identities=14% Similarity=0.137 Sum_probs=126.2
Q ss_pred ccCCcHHHHHHHHHHHHccccccChHHH----HHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhh--hchhhHhhhHHHH
Q 009975 262 SSDSSQHVRSALASVIMGMAPLLGKDAT----IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV--IGIDLLSQSLLPA 335 (521)
Q Consensus 262 ~~d~~~~vr~~~~~~l~~i~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~--~~~~~~~~~~~~~ 335 (521)
+.+.++.+|..+...++.+...++++.. .+.++..+...+.|. ..-..++.++..+.+. ++.+.. ..++..
T Consensus 8 Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~--~~~~~~l~gl~~L~~~~~~~~~~~-~~i~~~ 84 (262)
T PF14500_consen 8 LTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH--ACVQPALKGLLALVKMKNFSPESA-VKILRS 84 (262)
T ss_pred hCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH--hhHHHHHHHHHHHHhCcCCChhhH-HHHHHH
Confidence 3444444555554444444444332211 233445555555332 2223335555444421 222221 233333
Q ss_pred HHHHh--cCCChHHHHHHHHHhHHHHhhhChhh--hHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHhCHHHHHhhh
Q 009975 336 IVELA--EDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEWAMQHI 410 (521)
Q Consensus 336 l~~~~--~~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 410 (521)
+.+-. +......|..+.+.+..+........ ..+.++..+.+.+ .+.+|.--.-+++.+..+...+......+.+
T Consensus 85 l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~l 164 (262)
T PF14500_consen 85 LFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDL 164 (262)
T ss_pred HHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence 33221 22345678888888877776643321 2233444444444 4577777777888888887777654445555
Q ss_pred HHHHHhhh--------cCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH
Q 009975 411 TPQVLEMI--------NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 482 (521)
Q Consensus 411 ~~~l~~~l--------~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~ 482 (521)
+..+.-+. +|+..-.|+.....+..... +...|.+..+|.++.-|..+.+.+|.-++++|...+..+|.+
T Consensus 165 Fd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~ 242 (262)
T PF14500_consen 165 FDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGAD 242 (262)
T ss_pred HHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHH
Confidence 55554322 23322234444444444332 345677899999999999999999999999999999999987
Q ss_pred HHHhhHHHHH
Q 009975 483 MVEKTIRPCL 492 (521)
Q Consensus 483 ~~~~~~~~~l 492 (521)
.+.++..+.-
T Consensus 243 ~~~~~~~~iw 252 (262)
T PF14500_consen 243 SLSPHWSTIW 252 (262)
T ss_pred HHHHHHHHHH
Confidence 6665554443
No 138
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.055 Score=59.33 Aligned_cols=279 Identities=15% Similarity=0.149 Sum_probs=160.0
Q ss_pred hhhhhhhhhhcCCCChHHHHHHHHHHHHhcCCC----ChHHHHHHHH--hHHHHHHhh---------CchhhHHHHHHHH
Q 009975 77 VSACGLFHIAYPSAPDILKTELRSIYTQLCQDD----MPMVRRSAAS--NLGKFAATV---------EPAHLKTDIMSIF 141 (521)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~----~~~vr~~a~~--~l~~l~~~~---------~~~~~~~~l~~~l 141 (521)
-.+..+++.++++.+...+-.++..+....... -..|+..+.. ++-...+.+ +++.+...-..++
T Consensus 802 dta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~ 881 (2067)
T KOG1822|consen 802 DTAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALTLI 881 (2067)
T ss_pred HHHHHHHHHhccCccHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHH
Confidence 346678888888888776666666666554332 2334444433 333333222 2233444445556
Q ss_pred HHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHH-hcCCCChHHHHHHHHHHHHHHHHhCCCccccchH---H
Q 009975 142 EDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV---P 217 (521)
Q Consensus 142 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~---~ 217 (521)
...+..+++..|..+.++++.++...++..+...+.+.+.. +.+-.++..|..-.-++|.+-+..|.-...+++. .
T Consensus 882 ~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~ 961 (2067)
T KOG1822|consen 882 VNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVS 961 (2067)
T ss_pred hhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHH
Confidence 66667788999999999999999998877665565555444 4445667777777778898888877554444444 4
Q ss_pred HHHHhcCCChH-HHHHHHHHhHHHHHhhhCHHH--HHHhhhHHHHHh-ccCCc--HHHHHHHHHHHH------ccccccC
Q 009975 218 AYVRLLRDNEA-EVRIAAAGKVTKFCRILNPEL--AIQHILPCVKEL-SSDSS--QHVRSALASVIM------GMAPLLG 285 (521)
Q Consensus 218 ~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~-~~d~~--~~vr~~~~~~l~------~i~~~~~ 285 (521)
++..+.+|+.. .|+..++.++.-+....++.. +....+..+..+ +.++. ..++...-+++. .+....|
T Consensus 962 illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlg 1041 (2067)
T KOG1822|consen 962 ILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLG 1041 (2067)
T ss_pred HHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcc
Confidence 77777788764 999999999999888776642 222233333333 33332 223333222222 3333332
Q ss_pred hHH-----------HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHH
Q 009975 286 KDA-----------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 354 (521)
Q Consensus 286 ~~~-----------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~ 354 (521)
++. .....+-...-++..+++.+...+..++..+.-.-....-.+.+++.+..++....-..|.+.+.+
T Consensus 1042 peL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~~i~r~~~~~c 1121 (2067)
T KOG1822|consen 1042 PELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSYLILRRASFSC 1121 (2067)
T ss_pred cccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchhhhhhhhHHhh
Confidence 211 111122222223334467777777777776654333322235666766666555544444443333
Q ss_pred h
Q 009975 355 I 355 (521)
Q Consensus 355 l 355 (521)
+
T Consensus 1122 l 1122 (2067)
T KOG1822|consen 1122 L 1122 (2067)
T ss_pred h
Confidence 3
No 139
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.037 Score=59.39 Aligned_cols=148 Identities=14% Similarity=0.177 Sum_probs=95.8
Q ss_pred hhHHHHHHH-HhcCCChHHHHHHHHHhHHHHh--hhC-hhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHH
Q 009975 330 QSLLPAIVE-LAEDRHWRVRLAIIEYIPLLAS--QLG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 405 (521)
Q Consensus 330 ~~~~~~l~~-~~~~~~~~vr~~~~~~l~~l~~--~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 405 (521)
..++..+.. ...+.+|++|.++++.+..+.- .++ .+.-.+.+...+..++.|.+..||+.|+.++..+...--...
T Consensus 1525 ~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~ 1604 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQF 1604 (1710)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccccc
Confidence 556666664 3456789999999998876542 233 333457788899999999999999999999999876432111
Q ss_pred HHhhhHHHHHhh--hcCcchHHHHHHHHHHHHhhcccChH--HHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh
Q 009975 406 AMQHITPQVLEM--INNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 479 (521)
Q Consensus 406 ~~~~l~~~l~~~--l~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~ 479 (521)
.. ......... ..+.+...+.+|+..+|+++-.++-. .+.++.+..+-...+++ ..++.++-+++..+-...
T Consensus 1605 ~~-~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth 1680 (1710)
T KOG1851|consen 1605 VS-DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTH 1680 (1710)
T ss_pred ch-HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHh
Confidence 11 111122222 23345667789999999988644421 13333444444444555 678999999998876543
No 140
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.0038 Score=60.87 Aligned_cols=146 Identities=22% Similarity=0.212 Sum_probs=101.7
Q ss_pred hhHHHHHhccCCcHHHHHHHHHHHHccccccChHHH-------HHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhh---
Q 009975 254 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT-------IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI--- 323 (521)
Q Consensus 254 ~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~-------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~--- 323 (521)
.-|.+-..++-+|..||..|+..+-.+.+..|++.. .+.=...+.+++.|+-+.||..|...+.++...+
T Consensus 175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 345556667778888999988888888877776542 2233456778888888999988888888776642
Q ss_pred -chhhHhhhHHH-HHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 009975 324 -GIDLLSQSLLP-AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 400 (521)
Q Consensus 324 -~~~~~~~~~~~-~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 400 (521)
++..+ ..++. .+-++..|....||.+..+.+..++..-......++++|.+-..+.|+...||.++...+..+-..
T Consensus 255 iP~~i~-~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 255 IPPTIL-IDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred cCHHHH-HHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 12212 22222 223355667778888888888888776555566677888888888888888888888877766543
No 141
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.87 E-value=0.00028 Score=70.54 Aligned_cols=144 Identities=15% Similarity=0.102 Sum_probs=98.3
Q ss_pred HHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChH----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc
Q 009975 55 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP 130 (521)
Q Consensus 55 ~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~----~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 130 (521)
++...+.|.+.+..+......|.--...+.+...+.|.. ..+.++|++.+.++-+|..||..+...+..+....+.
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 445677777776666444455555555555555555544 2466788888888888888888888888777665543
Q ss_pred --hhhHHHHHHHHHHhhcCCC---hhHHHHHHHHHHHHhhhcChh---hhhhhhHHHHHHhcCCCChHHHHHHHHH
Q 009975 131 --AHLKTDIMSIFEDLTQDDQ---DSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQ 198 (521)
Q Consensus 131 --~~~~~~l~~~l~~l~~d~~---~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~~~~~ 198 (521)
......+.|.+..+..|++ -.||..|++++..+.+..+.. .+++.++..+.+.+.|+...||..|+.+
T Consensus 943 L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 943 LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 3455667777777776665 467888888888888876654 2455677777777788887888877765
No 142
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.86 E-value=0.0046 Score=58.11 Aligned_cols=126 Identities=19% Similarity=0.233 Sum_probs=87.9
Q ss_pred cHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhc------CcchHHHHHHHHHHHHhhcccC---------------
Q 009975 383 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN------NPHYLYRMTILRAISLLAPVMG--------------- 441 (521)
Q Consensus 383 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~~a~~~l~~l~~~~~--------------- 441 (521)
...-|.+|...+..+++..+... .+.+...+..+++ ..+|+.+.+|+..++.++....
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred cCCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 34578899999999988765432 1222233333332 3579999999999999996431
Q ss_pred hHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHH
Q 009975 442 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511 (521)
Q Consensus 442 ~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al 511 (521)
.+++..+++|.+. .-.+..|-+|-.|++.+..+-..++++.. ..++|.+.+.+.+++.-|+..|+.|+
T Consensus 303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l-~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQL-LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHH-HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 2345567777776 34456788999999999999998876655 67899999999999999999999875
No 143
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=0.014 Score=62.71 Aligned_cols=326 Identities=13% Similarity=0.063 Sum_probs=161.3
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHhCCCccc-----cchHHHHHH---hcCCCh-H--HHHHHHHHhHHHHH-----hhhC
Q 009975 183 FSQDKSWRVRYMVANQLYELCEAVGPEPTR-----MDLVPAYVR---LLRDNE-A--EVRIAAAGKVTKFC-----RILN 246 (521)
Q Consensus 183 ~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~-----~~l~~~l~~---~l~d~~-~--~vr~~a~~~l~~l~-----~~~~ 246 (521)
++++++..||...+-|+..|.+.+.++... .+++..+.+ .+.|.. + .-+..-++.+..+- ....
T Consensus 58 ~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d 137 (1266)
T KOG1525|consen 58 LLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLED 137 (1266)
T ss_pred HhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccc
Confidence 567889999999999999999988766533 233333332 234432 1 22223333333322 1112
Q ss_pred HHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchh
Q 009975 247 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 326 (521)
Q Consensus 247 ~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 326 (521)
.+.+...+...+..+..+..+.--......+..+.... +.....++..++.-+-.+.......|...-..++..++..
T Consensus 138 ~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~--d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~ 215 (1266)
T KOG1525|consen 138 CQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEE--DTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADN 215 (1266)
T ss_pred hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhh
Confidence 33444455555555554433321122222222222111 2223445555544444444444444444444444433321
Q ss_pred hHhhhHHHHHHHH-hcCC--ChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH
Q 009975 327 LLSQSLLPAIVEL-AEDR--HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 403 (521)
Q Consensus 327 ~~~~~~~~~l~~~-~~~~--~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 403 (521)
. ...+-..+... ..+. .-.++...-+.+-.+....+. ....++|.+...|...+..+|..|...+|.+....+.
T Consensus 216 ~-~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~--ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~ 292 (1266)
T KOG1525|consen 216 L-EDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQ--LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDS 292 (1266)
T ss_pred h-chhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHH--HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchh
Confidence 1 01112222221 1111 111222222222222221111 1234677777778888889999999999988765543
Q ss_pred HHH--HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh-hhc
Q 009975 404 EWA--MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP-IVD 480 (521)
Q Consensus 404 ~~~--~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~-~~~ 480 (521)
... ...++..+...+.|....+|..+++....+...-.. ........+.....|.++.+|.....++..... .+.
T Consensus 293 ~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~--~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~ 370 (1266)
T KOG1525|consen 293 QLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS--IAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFK 370 (1266)
T ss_pred hhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch--hhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhh
Confidence 332 345667777788899999999999888887753221 111111112222244445555443222211110 001
Q ss_pred hHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975 481 QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 481 ~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~ 516 (521)
-..... ++..+...+.|.-++||..|...+..+=+
T Consensus 371 l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 371 LVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 111112 55666667788888888888888877655
No 144
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.82 E-value=0.008 Score=55.35 Aligned_cols=160 Identities=13% Similarity=0.215 Sum_probs=92.7
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHH--------
Q 009975 179 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA-------- 250 (521)
Q Consensus 179 ~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-------- 250 (521)
++....+++++.+|..+.+++|-++ .+..+.. .+.++.+.+.++.++.+||..|++++..+....|.+.+
T Consensus 31 lI~P~v~~~~~~vR~~al~cLGl~~-Lld~~~a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~ 108 (298)
T PF12719_consen 31 LILPAVQSSDPAVRELALKCLGLCC-LLDKELA-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDE 108 (298)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHH-HhChHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCc
Confidence 3445667777778888888877443 3333332 34456666666555777888888877777776654311
Q ss_pred ---HHhhhHHHHHhccCCcHHHHHHHHHHHHccc--cccCh-HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc
Q 009975 251 ---IQHILPCVKELSSDSSQHVRSALASVIMGMA--PLLGK-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 324 (521)
Q Consensus 251 ---~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~--~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 324 (521)
...+...+.+.+.+.++.+|..+++.+.++. ..+.. ......++-.+.+--..++...|+.....++.++..-.
T Consensus 109 ~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~ 188 (298)
T PF12719_consen 109 SVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSP 188 (298)
T ss_pred cchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCH
Confidence 2345566666677777788888888887753 23333 33344444444444444556666666666655543222
Q ss_pred --hhhHhhhHHHHHHHHh
Q 009975 325 --IDLLSQSLLPAIVELA 340 (521)
Q Consensus 325 --~~~~~~~~~~~l~~~~ 340 (521)
.+.+.+..+|.+..+.
T Consensus 189 ~~Q~~l~~~f~~~l~~~~ 206 (298)
T PF12719_consen 189 ENQERLAEAFLPTLRTLS 206 (298)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 1223345556555544
No 145
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.82 E-value=0.01 Score=52.91 Aligned_cols=222 Identities=12% Similarity=0.043 Sum_probs=130.4
Q ss_pred HhhhhcCchhHHHHHHHHHHHHHHhhcChhHHH----HhHHHHHHHhhcCCCCcchhh--hhhhhhhhcCCCChHHHHHH
Q 009975 25 LETLCTVEETCVRDKAVESLCRIGSQMRESDLV----DWYIPLVKRLAAGEWFTARVS--ACGLFHIAYPSAPDILKTEL 98 (521)
Q Consensus 25 l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~----~~l~p~i~~~~~~~~~~~r~~--~~~~~~~~~~~~~~~~~~~l 98 (521)
|...+.++|+.+|..|+..|..+.+.++++.+. +.+..+.....+| +..+..+ ++..+... +..++.....+
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~-~~~~~~~~~~i 81 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVKM-KNFSPESAVKI 81 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHhC-cCCChhhHHHH
Confidence 455667899999999999999999999975443 3444554444433 3333322 22222222 23444434455
Q ss_pred HHHHHHhc--CCCChHHHHHHHHhHHHHHHhhCch--hhHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHhhhcChhhhh
Q 009975 99 RSIYTQLC--QDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQDCV 173 (521)
Q Consensus 99 ~~~l~~l~--~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~ 173 (521)
+..+.+-. +.-.+..|..+.+.+..+....... .....++.-+.+.... .++.--..+.+.+..+...++-+...
T Consensus 82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~ 161 (262)
T PF14500_consen 82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFA 161 (262)
T ss_pred HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhH
Confidence 55444422 2335678999999998888765432 1233455555555554 46666667778888887776654445
Q ss_pred hhhHHHHHHhc--------CCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh
Q 009975 174 AHILPVIVNFS--------QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 245 (521)
Q Consensus 174 ~~l~~~l~~~~--------~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 245 (521)
++++..+.... +|+..-.|......+..-.. ......+..+|.+.+-+.++...++.-++.+|.......
T Consensus 162 e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 162 EDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENY 239 (262)
T ss_pred HHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHC
Confidence 55555544322 23322233333333322111 112233567888888888888888888888888888877
Q ss_pred CHHHH
Q 009975 246 NPELA 250 (521)
Q Consensus 246 ~~~~~ 250 (521)
|.+..
T Consensus 240 ~~~~~ 244 (262)
T PF14500_consen 240 GADSL 244 (262)
T ss_pred CHHHH
Confidence 76644
No 146
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.80 E-value=4.3e-05 Score=42.75 Aligned_cols=29 Identities=38% Similarity=0.426 Sum_probs=17.6
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 009975 371 LGALCMQWLQDKVYSIRDAAANNLKRLAE 399 (521)
Q Consensus 371 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 399 (521)
++|.+.++++|++++||.+|+.+++.+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 35666666666666666666666666654
No 147
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.79 E-value=0.0035 Score=64.65 Aligned_cols=163 Identities=15% Similarity=0.164 Sum_probs=97.4
Q ss_pred hHHHHHHHHhcC----CChHHHHHHHHHhHHHHhhhChh----------------hhHHHHHHHHHHHcCCCcHHHHHHH
Q 009975 331 SLLPAIVELAED----RHWRVRLAIIEYIPLLASQLGVG----------------FFDDKLGALCMQWLQDKVYSIRDAA 390 (521)
Q Consensus 331 ~~~~~l~~~~~~----~~~~vr~~~~~~l~~l~~~~~~~----------------~~~~~l~~~l~~~l~d~~~~vr~~a 390 (521)
.++..+.++++. .+..++..++-+++.+....-.. .+.+++...+.......+.+.+..+
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 510 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY 510 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 444444444432 45667777777777776443211 2345555555555667778888999
Q ss_pred HHHHHHHHHHhCHHHHHhhhHHHHHhhhcCc---chHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCC--CchHH
Q 009975 391 ANNLKRLAEEFGPEWAMQHITPQVLEMINNP---HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR--VPNIK 465 (521)
Q Consensus 391 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~---~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~--~~~VR 465 (521)
+++||.+. ....++.+...+.+. ...+|.+|+.++..+..... ..+.+.+++.+.|. .++||
T Consensus 511 LkaLgN~g--------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~-----~~v~~~l~~I~~n~~e~~EvR 577 (618)
T PF01347_consen 511 LKALGNLG--------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP-----EKVREILLPIFMNTTEDPEVR 577 (618)
T ss_dssp HHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H-----HHHHHHHHHHHH-TTS-HHHH
T ss_pred HHHhhccC--------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc-----HHHHHHHHHHhcCCCCChhHH
Confidence 99998764 235778888877665 67899999999998865432 23444455544443 56799
Q ss_pred HHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHH
Q 009975 466 FNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQ 512 (521)
Q Consensus 466 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~ 512 (521)
.+|...|-..-+ +. ..+..+...+..|++..|+......|+
T Consensus 578 iaA~~~lm~~~P---~~---~~l~~i~~~l~~E~~~QV~sfv~S~Lk 618 (618)
T PF01347_consen 578 IAAYLILMRCNP---SP---SVLQRIAQSLWNEPSNQVASFVYSHLK 618 (618)
T ss_dssp HHHHHHHHHT------H---HHHHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC---CH---HHHHHHHHHHhhCchHHHHHHHHHhcC
Confidence 999876644322 11 233333444668999999988887763
No 148
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.75 E-value=4.1e-05 Score=42.87 Aligned_cols=28 Identities=21% Similarity=0.489 Sum_probs=14.8
Q ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975 450 LPVVINASKDRVPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 450 l~~l~~~l~d~~~~VR~~a~~~l~~~~~ 477 (521)
+|.+.++++|+++.||.+|+.+++.+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4555555555555555555555555544
No 149
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.71 E-value=0.052 Score=52.28 Aligned_cols=212 Identities=17% Similarity=0.152 Sum_probs=132.4
Q ss_pred hhhHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHhhhcCh-----hhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 009975 131 AHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEP-----QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 204 (521)
Q Consensus 131 ~~~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~ 204 (521)
..+...++..+...+.- .++.+..-.++.+..+..+..+ +.....++..+....+.++..||..+++.+..+..
T Consensus 41 ~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d 120 (885)
T COG5218 41 HEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSD 120 (885)
T ss_pred HhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHH
Confidence 34445555554444331 1233333344555555553222 12344566667778888999999999999999998
Q ss_pred HhCC--CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhc-cCCcHHHHHHHHHHHHccc
Q 009975 205 AVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS-SDSSQHVRSALASVIMGMA 281 (521)
Q Consensus 205 ~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~i~ 281 (521)
.+++ +.....++.-+.+-+-|.++.||..|+.+|..+-+.-+.+. ..+...++..+ .||+..||+.+.-.+..
T Consensus 121 ~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee--n~~~n~l~~~vqnDPS~EVRr~allni~v-- 196 (885)
T COG5218 121 VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE--NRIVNLLKDIVQNDPSDEVRRLALLNISV-- 196 (885)
T ss_pred hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--HHHHHHHHHHHhcCcHHHHHHHHHHHeee--
Confidence 8875 44556677777778889999999999999998876554332 22334444444 68999999998755432
Q ss_pred cccChHHHHHhHHHHHHHhhcCCChHHHHHHH-HHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhH
Q 009975 282 PLLGKDATIEQLLPIFLSLLKDEFPDVRLNII-SKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356 (521)
Q Consensus 282 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~-~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~ 356 (521)
.+.-.|.++.-..|-+...|+... .+|+++...-.. ...+.++ .+..-+.|....+|.++...+.
T Consensus 197 --------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~l-si~kri~-l~ewgl~dRe~sv~~a~~d~ia 262 (885)
T COG5218 197 --------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSL-SIDKRIL-LMEWGLLDREFSVKGALVDAIA 262 (885)
T ss_pred --------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhc-cccceeh-hhhhcchhhhhhHHHHHHHHHH
Confidence 123467777777887776666543 344444322110 0112222 4555678888889988877664
No 150
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0014 Score=62.16 Aligned_cols=93 Identities=23% Similarity=0.130 Sum_probs=43.9
Q ss_pred hcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC
Q 009975 145 TQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR 224 (521)
Q Consensus 145 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~ 224 (521)
.+|.++.||.+|+-+++-++-. -...+...+.-+.++.++.||...+-+++-.+..-| .+..+.++..+..
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~-----D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G----~~~a~diL~~L~~ 631 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCD-----DRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTG----DKVATDILEALMY 631 (926)
T ss_pred cccCchHHHHHHHHheeeeEec-----CcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc----cHHHHHHHHHHhh
Confidence 3455555565555555543311 011233333334444555566555555554332222 1223455555555
Q ss_pred CChHHHHHHHHHhHHHHHhhhC
Q 009975 225 DNEAEVRIAAAGKVTKFCRILN 246 (521)
Q Consensus 225 d~~~~vr~~a~~~l~~l~~~~~ 246 (521)
|+..-||.+|+-+++.+.....
T Consensus 632 D~~dfVRQ~AmIa~~mIl~Q~n 653 (926)
T COG5116 632 DTNDFVRQSAMIAVGMILMQCN 653 (926)
T ss_pred CcHHHHHHHHHHHHHHHHhhcC
Confidence 5555666666555555554443
No 151
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.68 E-value=0.043 Score=61.67 Aligned_cols=245 Identities=12% Similarity=0.125 Sum_probs=133.5
Q ss_pred HHHHHHHHH-hcCCCChHHHHHHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhh-cC---
Q 009975 96 TELRSIYTQ-LCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL-LE--- 168 (521)
Q Consensus 96 ~~l~~~l~~-l~~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~-~~--- 168 (521)
++++..+.. +....+..||+.+++++..+....+. ..-|+.++..+.....++.+.+-..|.+++..+... ++
T Consensus 1181 kefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~ 1260 (1780)
T PLN03076 1181 NEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYIT 1260 (1780)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhcc
Confidence 344444443 23344567777777777766654432 224566666666666666666666666666655433 11
Q ss_pred h--hhhhhhhHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHhCC-----------------------------------C-
Q 009975 169 P--QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGP-----------------------------------E- 209 (521)
Q Consensus 169 ~--~~~~~~l~~~l~~~~~d~-~~~vR~~~~~~l~~i~~~~~~-----------------------------------~- 209 (521)
. .....+++..+.++.+.. +.++-..+...|..++..+-. +
T Consensus 1261 ~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 1340 (1780)
T PLN03076 1261 ETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDD 1340 (1780)
T ss_pred ccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchh
Confidence 1 123344555555554432 234444444444433222200 0
Q ss_pred --ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH----HH----HHHhhhHHHHHhcc----------------
Q 009975 210 --PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP----EL----AIQHILPCVKELSS---------------- 263 (521)
Q Consensus 210 --~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~----~~~~~~~~l~~~~~---------------- 263 (521)
..|-.++-.+..+..|+..+||..|+.+|-.+....|. +. +...+.|.+..+-.
T Consensus 1341 ~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~ 1420 (1780)
T PLN03076 1341 HLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVD 1420 (1780)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 01112333344456799999999999998877776653 22 22234555433210
Q ss_pred ------CCcHHHHHHHHHHHHccccccChH-----HHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch----hhH
Q 009975 264 ------DSSQHVRSALASVIMGMAPLLGKD-----ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI----DLL 328 (521)
Q Consensus 264 ------d~~~~vr~~~~~~l~~i~~~~~~~-----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~----~~~ 328 (521)
+.+.+....+..++..++..+..- ...+.++..+..++..++..+-+....+|..++...|. +.+
T Consensus 1421 ~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W 1500 (1780)
T PLN03076 1421 GDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKW 1500 (1780)
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 111134566666666666554431 12345566666777888899999999999988776653 333
Q ss_pred hhhHHHHHHHHhc
Q 009975 329 SQSLLPAIVELAE 341 (521)
Q Consensus 329 ~~~~~~~l~~~~~ 341 (521)
..++..+.+++.
T Consensus 1501 -~~i~~~~~~lf~ 1512 (1780)
T PLN03076 1501 -LEVVLSLKEAAN 1512 (1780)
T ss_pred -HHHHHHHHHHHH
Confidence 566666666553
No 152
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.65 E-value=0.11 Score=54.34 Aligned_cols=150 Identities=17% Similarity=0.064 Sum_probs=110.9
Q ss_pred hchhhHhhhHHHHHHHHhc----CCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHH
Q 009975 323 IGIDLLSQSLLPAIVELAE----DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRL 397 (521)
Q Consensus 323 ~~~~~~~~~~~~~l~~~~~----~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l 397 (521)
.|++.+...+.|.+.+.+. ..++.++.+|.-+++.+... +. .|.+.-+|.+++.++ .+++.+|..+.-+++.+
T Consensus 911 ~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa-~fces~l~llftimeksp~p~IRsN~VvalgDl 988 (1251)
T KOG0414|consen 911 YGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SA-EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDL 988 (1251)
T ss_pred cChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hH-HHHHHHHHHHHHHHhcCCCceeeecchheccch
Confidence 3545555778888888773 34688999888888777643 22 345567788888877 79999999999999888
Q ss_pred HHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975 398 AEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 398 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~ 477 (521)
+-.+.. ..+...+.+...+.|++..+|.+|+..+.+++-.---. ..-.++-+-.++.|+++.||.-|=.....+..
T Consensus 989 av~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiK--VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 989 AVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIK--VKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred hhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhH--hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 754432 34566678888999999999999999999987421111 23456677788999999999888877777766
Q ss_pred h
Q 009975 478 I 478 (521)
Q Consensus 478 ~ 478 (521)
.
T Consensus 1065 k 1065 (1251)
T KOG0414|consen 1065 K 1065 (1251)
T ss_pred c
Confidence 5
No 153
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0075 Score=57.50 Aligned_cols=248 Identities=14% Similarity=0.063 Sum_probs=139.0
Q ss_pred ChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCC-CC
Q 009975 110 MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KS 188 (521)
Q Consensus 110 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~ 188 (521)
.|.+...++-.+|-..-.. ...++...+.+++..++...-.+|...++-+.-.- .....+.-+...... ..
T Consensus 424 ~~~l~yG~~LGiGL~~MgS----an~eiye~lKe~l~nD~a~~geAa~~gMGl~mLgt----~s~eai~dm~tya~ETqh 495 (926)
T COG5116 424 TPELAYGVCLGIGLINMGS----ANREIYEKLKELLKNDRALLGEAAVYGMGLLMLGT----WSVEAIEDMRTYAGETQH 495 (926)
T ss_pred cHHHHHHHHhhhcchhccc----ccHHHHHHHHHHHhcchhhhhhhhhhccceeeecC----CCHHHHHHHHHHhcchhh
Confidence 4577777776666543222 22344555566555544433334433333222111 112233333333332 33
Q ss_pred hHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHH
Q 009975 189 WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQH 268 (521)
Q Consensus 189 ~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~ 268 (521)
.++++...-.+.-+.- +. .+..-..+.+++.|.++-.|...+-+++.----.|.......+++. ..+|.+..
T Consensus 496 e~i~Rglgig~aLi~y--gr---qe~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~---avsD~nDD 567 (926)
T COG5116 496 ERIKRGLGIGFALILY--GR---QEMADDYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHY---AVSDGNDD 567 (926)
T ss_pred hhHHhhhhhhhhHhhh--hh---HHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhhee---ecccCchH
Confidence 4455544444332221 11 1123346677888888888887765554322222333322223222 25788999
Q ss_pred HHHHHHHHHHccccccChHHHHHhHHHHHHH-hhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHH
Q 009975 269 VRSALASVIMGMAPLLGKDATIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRV 347 (521)
Q Consensus 269 vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v 347 (521)
||++++-+++-++ +.+ ..+++..++ +.++.++.||.+.+-+|+-.+...|. +..+..+..+..|++.-|
T Consensus 568 VrRAAViAlGfvc--~~D----~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~----~~a~diL~~L~~D~~dfV 637 (926)
T COG5116 568 VRRAAVIALGFVC--CDD----RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD----KVATDILEALMYDTNDFV 637 (926)
T ss_pred HHHHHHHheeeeE--ecC----cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc----HHHHHHHHHHhhCcHHHH
Confidence 9999988888765 221 123444444 44566899999999999988877664 345667777888999999
Q ss_pred HHHHHHHhHHHHhhhChhhh--HHHHHHHHHHHcCCCc
Q 009975 348 RLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKV 383 (521)
Q Consensus 348 r~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~ 383 (521)
|..++-+.+.+..++.++.- ...+..-+.+.+.|..
T Consensus 638 RQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 638 RQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred HHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhh
Confidence 99999888888877766421 2334555555555544
No 154
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.61 E-value=0.043 Score=50.53 Aligned_cols=214 Identities=16% Similarity=0.177 Sum_probs=117.5
Q ss_pred HhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhh-----------
Q 009975 299 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF----------- 367 (521)
Q Consensus 299 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~----------- 367 (521)
..++..++.+|..++.++|-++-. +.+ .....++.+...++..+..+|..+++++..+....|.+.+
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Ll-d~~-~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLL-DKE-LAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHh-ChH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 455666667777777776665432 111 2234455555544444666777777766666655554322
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhh----cCcchHHHHHHHHHHHHhhcccC--
Q 009975 368 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI----NNPHYLYRMTILRAISLLAPVMG-- 441 (521)
Q Consensus 368 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~~~~~~~r~~a~~~l~~l~~~~~-- 441 (521)
...+...+...+.+.++++|..|++.+.++.-.-.... ...++..|.-.. ..++.++|+....++...+..-.
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~-~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~ 190 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD-PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPEN 190 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHH
Confidence 23567778888888888899999988888763221110 123333333322 23457788877777776664222
Q ss_pred hHHHhhcHHHHHHhhcCCCC----chHHHHHHHHHHHHHhhhchH--------------HHHhhHHHHHHHhcCCCCcc-
Q 009975 442 SEITCSRLLPVVINASKDRV----PNIKFNVAKVLQSLIPIVDQS--------------MVEKTIRPCLVELTEDPDVD- 502 (521)
Q Consensus 442 ~~~~~~~il~~l~~~l~d~~----~~VR~~a~~~l~~~~~~~~~~--------------~~~~~~~~~l~~l~~D~~~~- 502 (521)
...+.+.++|.+..+.+.+. +.-.....+....++....+. .........+..+.+|+..+
T Consensus 191 Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~~~~~~~~~~~~~~~~~h~~La~~il~~i~~~~~~~~ 270 (298)
T PF12719_consen 191 QERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDPSKLVKESNQEIQNESVHVDLAIDILNEILSDPEKEK 270 (298)
T ss_pred HHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCChhhccCccccccccccHHHHHHHHHHHHHHhccccch
Confidence 12344556666666544332 222223334444444332111 12234455666667666665
Q ss_pred -HHHHHHHHHHHHH
Q 009975 503 -VRFFATQAIQSID 515 (521)
Q Consensus 503 -vr~~a~~al~~l~ 515 (521)
.+..-.+++..+.
T Consensus 271 ~~~k~~~~~L~~L~ 284 (298)
T PF12719_consen 271 EERKALCKALSKLE 284 (298)
T ss_pred HHHHHHHHHHhccc
Confidence 7777777777654
No 155
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.61 E-value=0.017 Score=59.55 Aligned_cols=230 Identities=18% Similarity=0.186 Sum_probs=119.7
Q ss_pred HHHHHHHHHHhcCC-CChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhc-Chhhh
Q 009975 95 KTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL-EPQDC 172 (521)
Q Consensus 95 ~~~l~~~l~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~-~~~~~ 172 (521)
.+.|..+..++... .....|.....+|..... .. -+..+.+++....-. -..+...+..+.... .+.
T Consensus 361 ~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT----~~----av~~i~~~I~~~~~~-~~ea~~~l~~l~~~~~~Pt-- 429 (618)
T PF01347_consen 361 YEDLEELYKQLKSKSKKEQARKIFLDALPQAGT----NP----AVKFIKDLIKSKKLT-DDEAAQLLASLPFHVRRPT-- 429 (618)
T ss_dssp HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-S----HH----HHHHHHHHHHTT-S--HHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCC----HH----HHHHHHHHHHcCCCC-HHHHHHHHHHHHhhcCCCC--
Confidence 34555555554433 345666666666655432 22 223334444432222 122445555555444 221
Q ss_pred hhhhHHHHHHhcCC----CChHHHHHHHHHHHHHHHHhCCC------------ccccchHHHHHHhc----CCChHHHHH
Q 009975 173 VAHILPVIVNFSQD----KSWRVRYMVANQLYELCEAVGPE------------PTRMDLVPAYVRLL----RDNEAEVRI 232 (521)
Q Consensus 173 ~~~l~~~l~~~~~d----~~~~vR~~~~~~l~~i~~~~~~~------------~~~~~l~~~l~~~l----~d~~~~vr~ 232 (521)
..++..+..+++. .++.+|..++-+++.++...... .....+++.+...+ ...+...+.
T Consensus 430 -~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 508 (618)
T PF01347_consen 430 -EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKI 508 (618)
T ss_dssp -HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHH
T ss_pred -HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHH
Confidence 2344444444443 56789999999999998754322 22345555555544 355668888
Q ss_pred HHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCC---cHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHH
Q 009975 233 AAAGKVTKFCRILNPELAIQHILPCVKELSSDS---SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVR 309 (521)
Q Consensus 233 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~---~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr 309 (521)
.++++|+.++. +..++.+...+.+. +..+|.+|++++..++...+. ...+.++|++.+- ..+.++|
T Consensus 509 ~~LkaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~-~v~~~l~~I~~n~--~e~~EvR 577 (618)
T PF01347_consen 509 VYLKALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE-KVREILLPIFMNT--TEDPEVR 577 (618)
T ss_dssp HHHHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH-HHHHHHHHHHH-T--TS-HHHH
T ss_pred HHHHHhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH-HHHHHHHHHhcCC--CCChhHH
Confidence 99999998764 23556666666555 678999999999988544432 2233444444432 2457899
Q ss_pred HHHHHHHHHhhhhhchhhHhhhHHHHHHHH-hcCCChHHHHHHHHH
Q 009975 310 LNIISKLDQVNQVIGIDLLSQSLLPAIVEL-AEDRHWRVRLAIIEY 354 (521)
Q Consensus 310 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~vr~~~~~~ 354 (521)
.+|...+-...+. ..++..+... -.+++..|+..+...
T Consensus 578 iaA~~~lm~~~P~-------~~~l~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 578 IAAYLILMRCNPS-------PSVLQRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp HHHHHHHHHT----------HHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-------HHHHHHHHHHHhhCchHHHHHHHHHh
Confidence 9998777664332 2334444443 356777777655443
No 156
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.58 E-value=0.093 Score=51.69 Aligned_cols=140 Identities=14% Similarity=0.113 Sum_probs=99.6
Q ss_pred HHHHHHHHcCC----CcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhh-cCcchHHHHHHHHHHHHhhcccChHHH
Q 009975 371 LGALCMQWLQD----KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NNPHYLYRMTILRAISLLAPVMGSEIT 445 (521)
Q Consensus 371 l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~~a~~~l~~l~~~~~~~~~ 445 (521)
+-|+......+ .++.+..+|.-++..+.- +..++ ...-+|.+...+ ++|++++|..|+-.+|.+.-.+.. +
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMC-lS~~f-c~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~--~ 968 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMC-LSFEF-CSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT--T 968 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHH-HhHHH-HHHHHHHHHHHHhhCCCcceeccceeeccccceehhh--h
Confidence 55666555554 677777777777776652 23333 344567776654 589999999999888887754432 3
Q ss_pred hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975 446 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 446 ~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~ 516 (521)
.+..-.+++.-+.|.+..||..++-++..+.-+ |.-.+ .--++.+..++.|+|..+...|..-+..+.+
T Consensus 969 ~de~t~yLyrrL~De~~~V~rtclmti~fLila-gq~KV-KGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 969 ADEHTHYLYRRLGDEDADVRRTCLMTIHFLILA-GQLKV-KGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred hHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHc-cceee-ccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 456677889999999999999999998887654 21122 3345777888999999999999888877765
No 157
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=97.58 E-value=0.012 Score=60.15 Aligned_cols=215 Identities=16% Similarity=0.169 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCC--hHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcC--
Q 009975 267 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-- 342 (521)
Q Consensus 267 ~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-- 342 (521)
+..|....+++.... .. ..+..+...+.... +.....++..+......-. ..++..+.+++++
T Consensus 340 ~~~r~~~~Dal~~~G----T~----~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt-----~~~l~~l~~l~~~~~ 406 (574)
T smart00638 340 KKARRIFLDAVAQAG----TP----PALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPT-----EEILKALFELAESPE 406 (574)
T ss_pred HHHHHHHHHHHHhcC----CH----HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCC-----HHHHHHHHHHhcCcc
Confidence 566777777766654 22 22333444443322 2233333333333332222 4456666666554
Q ss_pred --CChHHHHHHHHHhHHHHhhhCh----------hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhh
Q 009975 343 --RHWRVRLAIIEYIPLLASQLGV----------GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI 410 (521)
Q Consensus 343 --~~~~vr~~~~~~l~~l~~~~~~----------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 410 (521)
+++.+|..++-+++.+...... +.+.+++...+....++.+.+.+..++++||.+.. . ..
T Consensus 407 ~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----~----~~ 478 (574)
T smart00638 407 VQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----P----SS 478 (574)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----h----hH
Confidence 3567888888888888763321 12233344444444556677777888888886542 2 23
Q ss_pred HHHHHhhhc---CcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhh
Q 009975 411 TPQVLEMIN---NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKT 487 (521)
Q Consensus 411 ~~~l~~~l~---~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~ 487 (521)
++.+...+. +....+|..|+.++..++...... +.+.+++.... .+..++||.+|+..+-..-+ +. ..
T Consensus 479 i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~-v~~~l~~i~~n--~~e~~EvRiaA~~~lm~t~P---~~---~~ 549 (574)
T smart00638 479 IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK-VQEVLLPIYLN--RAEPPEVRMAAVLVLMETKP---SV---AL 549 (574)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHcC--CCCChHHHHHHHHHHHhcCC---CH---HH
Confidence 333443333 235789999999999887644432 23334443322 23477899999877644322 11 22
Q ss_pred HHHHHHHhcCCCCccHHHHHHHHH
Q 009975 488 IRPCLVELTEDPDVDVRFFATQAI 511 (521)
Q Consensus 488 ~~~~l~~l~~D~~~~vr~~a~~al 511 (521)
+..+...+..|++..|+......|
T Consensus 550 l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 550 LQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred HHHHHHHHhhcCcHHHHHHhHHhh
Confidence 333334456788889988877654
No 158
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.37 E-value=0.0074 Score=61.74 Aligned_cols=207 Identities=17% Similarity=0.130 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHhhhhhchh----hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhh---hChhhhHHHHHHHHHHHcC
Q 009975 308 VRLNIISKLDQVNQVIGID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ---LGVGFFDDKLGALCMQWLQ 380 (521)
Q Consensus 308 vr~~a~~~l~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~---~~~~~~~~~l~~~l~~~l~ 380 (521)
.|..|+.-|+++.. +|+= .+.-.++|...++++++....|...+.....+... +..+.+.+..-..+++.+.
T Consensus 486 HRlRAL~LL~RFLD-lGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~ 564 (1387)
T KOG1517|consen 486 HRLRALVLLARFLD-LGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHHhc-cchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence 36667777777765 3321 13357899999999999988888777665554422 2222222221112223333
Q ss_pred C---CcHHHHHHHHHHHHHHHHHh--CHHH-HHhhhHHHHHhhhcCc-chHHHHHHHHHHHHhhcccChHHHh---hcHH
Q 009975 381 D---KVYSIRDAAANNLKRLAEEF--GPEW-AMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSEITC---SRLL 450 (521)
Q Consensus 381 d---~~~~vr~~a~~~l~~l~~~~--~~~~-~~~~l~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~~~~~---~~il 450 (521)
+ -+++-|..|+-.|+.++..+ |.+. ....++......++|+ .+-+|+.++-++|.+-+.+....+. ....
T Consensus 565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 3 23477888888888888766 4333 2356777777888884 7999999999999998866654442 3456
Q ss_pred HHHHhhcCCCCchHHHHHHHHHHHHHhhh----chH--------------HHHhhHHH----HHHHhcCCCCccHHHHHH
Q 009975 451 PVVINASKDRVPNIKFNVAKVLQSLIPIV----DQS--------------MVEKTIRP----CLVELTEDPDVDVRFFAT 508 (521)
Q Consensus 451 ~~l~~~l~d~~~~VR~~a~~~l~~~~~~~----~~~--------------~~~~~~~~----~l~~l~~D~~~~vr~~a~ 508 (521)
..++.++.|+.++||-+|+.+|+.+.... +.. ...+...+ .+..+.+|..+-||...+
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~ 724 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV 724 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence 77888999999999999999999998752 111 00122222 445567899999998888
Q ss_pred HHHHHHH
Q 009975 509 QAIQSID 515 (521)
Q Consensus 509 ~al~~l~ 515 (521)
-++..+.
T Consensus 725 v~ls~~~ 731 (1387)
T KOG1517|consen 725 VALSHFV 731 (1387)
T ss_pred HHHHHHH
Confidence 7776554
No 159
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.19 Score=50.01 Aligned_cols=411 Identities=14% Similarity=0.095 Sum_probs=211.3
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCC-ChhHHHHHHHHHHH-HhhhcCh----
Q 009975 96 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAA-LGKLLEP---- 169 (521)
Q Consensus 96 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~-l~~~~~~---- 169 (521)
.++++.+.+. -|.|+.+|..|-..|..+-+. +.+ ++.++.-+..|+ ...||.+|.--+.+ +....+.
T Consensus 3 ~ellqcf~qT-ldada~~rt~AE~~Lk~leKq---PgF---v~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~ 75 (970)
T COG5656 3 EELLQCFLQT-LDADAGKRTIAEAMLKDLEKQ---PGF---VMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDD 75 (970)
T ss_pred HHHHHHHHHH-hccCcchhhHHHHHHHHhhcC---CcH---HHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccC
Confidence 3455555443 356788998888877776442 112 222333344553 45777766443333 3222221
Q ss_pred -------hhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHH
Q 009975 170 -------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFC 242 (521)
Q Consensus 170 -------~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 242 (521)
...+..++..+...+.......|......+..+...-.+...+. +.|...+++..++...-..++.++.++.
T Consensus 76 ~i~~Dek~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elf 154 (970)
T COG5656 76 GIKADEKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELF 154 (970)
T ss_pred CCCCcccHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHH
Confidence 12344456666665554443444333333332222111112233 8888999999998888888899998888
Q ss_pred hhhC-----H----HHHHHhhhHHHHHhccC----CcHHH---HHHHHHHHH-----ccccccChHHHHHhHHHHHHHhh
Q 009975 243 RILN-----P----ELAIQHILPCVKELSSD----SSQHV---RSALASVIM-----GMAPLLGKDATIEQLLPIFLSLL 301 (521)
Q Consensus 243 ~~~~-----~----~~~~~~~~~~l~~~~~d----~~~~v---r~~~~~~l~-----~i~~~~~~~~~~~~l~~~l~~~l 301 (521)
+... . ..+.....|.+.+.... .|... -.-.++.+. .+-..+........+....+..+
T Consensus 155 kayRwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i~ 234 (970)
T COG5656 155 KAYRWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRIL 234 (970)
T ss_pred HHHhhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHHH
Confidence 8652 1 12334455666544321 22211 111111111 11111211111223333334444
Q ss_pred cCC--------ChHH---------HHHHHHHHHHhhhhhchhh----------HhhhHHHHHHHH-h-------cCCChH
Q 009975 302 KDE--------FPDV---------RLNIISKLDQVNQVIGIDL----------LSQSLLPAIVEL-A-------EDRHWR 346 (521)
Q Consensus 302 ~d~--------~~~v---------r~~a~~~l~~~~~~~~~~~----------~~~~~~~~l~~~-~-------~~~~~~ 346 (521)
+-+ +++| ++.|...+.++.+..+... .....+|.+.+. + +..-|-
T Consensus 235 qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLWl 314 (970)
T COG5656 235 QKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLWL 314 (970)
T ss_pred cCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeec
Confidence 322 4444 4567777777665443211 011244444332 1 112222
Q ss_pred HHHHHHHHhHHHHhhhC-hhhh------------HHHHHHHHH------HHc-CCCcHHHHHH-------------HHHH
Q 009975 347 VRLAIIEYIPLLASQLG-VGFF------------DDKLGALCM------QWL-QDKVYSIRDA-------------AANN 393 (521)
Q Consensus 347 vr~~~~~~l~~l~~~~~-~~~~------------~~~l~~~l~------~~l-~d~~~~vr~~-------------a~~~ 393 (521)
- ...+-.+..+...+- .+.+ ...+.|.+- .++ .|++.-+|+. |..+
T Consensus 315 s-d~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~f 393 (970)
T COG5656 315 S-DIELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFF 393 (970)
T ss_pred c-hHHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHH
Confidence 1 112223333333221 1111 122333321 111 2444444432 2222
Q ss_pred HHHHHHHhCHHHHHhhhHHHHHhhhc-----C---cchHHHHHHHHHHHHhhcccCh-----HHHhhcHHHHHHhhcCCC
Q 009975 394 LKRLAEEFGPEWAMQHITPQVLEMIN-----N---PHYLYRMTILRAISLLAPVMGS-----EITCSRLLPVVINASKDR 460 (521)
Q Consensus 394 l~~l~~~~~~~~~~~~l~~~l~~~l~-----~---~~~~~r~~a~~~l~~l~~~~~~-----~~~~~~il~~l~~~l~d~ 460 (521)
+-..... ..+...+.+++.+.+.++ + .|.+-.+.|++.+..+...+.. ..+..-+++++...++++
T Consensus 394 l~~~~sK-rke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ 472 (970)
T COG5656 394 LIISKSK-RKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSN 472 (970)
T ss_pred HHHHhcc-cchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCc
Confidence 2222222 222223557777777662 2 3567778899999888874332 123345678888889999
Q ss_pred CchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975 461 VPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 461 ~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~ 516 (521)
.--.|.+||..++.+...+...-....+.....+++++.+-.|+..|+.|++.+..
T Consensus 473 ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~ 528 (970)
T COG5656 473 YGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIF 528 (970)
T ss_pred ccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHh
Confidence 99999999999999977666666666777777788888999999999999987643
No 160
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.21 Score=50.10 Aligned_cols=181 Identities=14% Similarity=0.207 Sum_probs=114.4
Q ss_pred HhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhC--HH
Q 009975 328 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFG--PE 404 (521)
Q Consensus 328 ~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~--~~ 404 (521)
+.+.++|.+. ...+....+|..++-.++.....--+....+.+-..+.+++.|. +..||.+++.++..++.... .+
T Consensus 485 l~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~d 563 (978)
T KOG1993|consen 485 LQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSED 563 (978)
T ss_pred HHHhhCHHhh-hcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChh
Confidence 3455566555 22233455788888888887765444445566666778899997 78899999999999887553 22
Q ss_pred HH---HhhhHHHHHhhhcC-cchHHHHHHHHHHHHhhcccChHH--H---hhcHHHHHHhhcCCCCchHHHHHHHHHHHH
Q 009975 405 WA---MQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSEI--T---CSRLLPVVINASKDRVPNIKFNVAKVLQSL 475 (521)
Q Consensus 405 ~~---~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~~~--~---~~~il~~l~~~l~d~~~~VR~~a~~~l~~~ 475 (521)
.+ .+.++..+..++.. .....|...+..++.++...+.-. + .-.++|.+++.-+ +.+-.|.+.+.++..+
T Consensus 564 sFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~l 642 (978)
T KOG1993|consen 564 SFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNL 642 (978)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHH
Confidence 21 23334444444433 345667888888888887555321 1 1245666666555 5778999999999999
Q ss_pred HhhhchHH--HHhhHHHHHHHhcCCCCccHHHHHHHH
Q 009975 476 IPIVDQSM--VEKTIRPCLVELTEDPDVDVRFFATQA 510 (521)
Q Consensus 476 ~~~~~~~~--~~~~~~~~l~~l~~D~~~~vr~~a~~a 510 (521)
+..+|.+. +.+.+.|.+....+-..++-.....++
T Consensus 643 V~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDg 679 (978)
T KOG1993|consen 643 VNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDG 679 (978)
T ss_pred HHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhH
Confidence 99988653 346677776644333344443443333
No 161
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.012 Score=51.94 Aligned_cols=174 Identities=14% Similarity=0.135 Sum_probs=108.8
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHH-
Q 009975 214 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATI- 290 (521)
Q Consensus 214 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~- 290 (521)
..+......+.+++|+....++..+..+....... .-...++..+.+-+.++...|-.+++.+++.+...++.....
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555667778888888888777777765432 223445555566667777777778888888877766654322
Q ss_pred -HhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh----
Q 009975 291 -EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---- 365 (521)
Q Consensus 291 -~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---- 365 (521)
+.++-.+..--.+++..||..|-.+|..+.....+. .+++.+.....+.++++|..++.++.....-+|-.
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~----~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~ 243 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ----KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLL 243 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH----HHHHHHHHHHhhhchhhhhhhhccccccceeccccchhh
Confidence 223333333334556778888888888888776664 34555555567778888888877777666666522
Q ss_pred hhHHHHHHHHHHHcCCCcHHHHHHHH
Q 009975 366 FFDDKLGALCMQWLQDKVYSIRDAAA 391 (521)
Q Consensus 366 ~~~~~l~~~l~~~l~d~~~~vr~~a~ 391 (521)
++...+.+.+-+-+.|.-+.+|.+|-
T Consensus 244 ~~~~dl~~a~~~~~~d~Lp~~~~~a~ 269 (334)
T KOG2933|consen 244 QGSCDLSRAAQEQGSDKLPELREAAR 269 (334)
T ss_pred HhHHHHHHHHHhhhcccccccccchh
Confidence 22334455555556666666665443
No 162
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=0.01 Score=60.69 Aligned_cols=209 Identities=13% Similarity=0.166 Sum_probs=139.5
Q ss_pred HHHHHHHHHccccccChHHH---HHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc---hhhHhhhHHHHHHHHhcC-
Q 009975 270 RSALASVIMGMAPLLGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAED- 342 (521)
Q Consensus 270 r~~~~~~l~~i~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~~- 342 (521)
|.-|+..++.+.+.=+-... .--++|+.+++|+++-.+.|...+-...++...-. .+.+.+..-..+.+.+.+
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence 44556666666543222111 12579999999999999999888777777654321 111111111111111222
Q ss_pred --CChHHHHHHHHHhHHHHhhhCh---hhhHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhCHHHH---HhhhHHH
Q 009975 343 --RHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPEWA---MQHITPQ 413 (521)
Q Consensus 343 --~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~ 413 (521)
-++..|..++..|..+...+.. ..+...++.+++..++|+ .+-.|+-++-+||.+-+.+...-. .......
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek 646 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK 646 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence 2347788888888888877532 344566788899999995 799999999999999887754321 3445667
Q ss_pred HHhhhcCcchHHHHHHHHHHHHhhcccChH------HH------------hhcHHH----HHHhhcCCCCchHHHHHHHH
Q 009975 414 VLEMINNPHYLYRMTILRAISLLAPVMGSE------IT------------CSRLLP----VVINASKDRVPNIKFNVAKV 471 (521)
Q Consensus 414 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~------~~------------~~~il~----~l~~~l~d~~~~VR~~a~~~ 471 (521)
|...+.|+-+.||.+|+.++|.+....... .. .+..++ .+...++|.++-||...+.+
T Consensus 647 L~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ 726 (1387)
T KOG1517|consen 647 LILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVA 726 (1387)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHH
Confidence 777889999999999999999999753110 00 123333 56778899999999999999
Q ss_pred HHHHHhh
Q 009975 472 LQSLIPI 478 (521)
Q Consensus 472 l~~~~~~ 478 (521)
+..++-.
T Consensus 727 ls~~~~g 733 (1387)
T KOG1517|consen 727 LSHFVVG 733 (1387)
T ss_pred HHHHHHh
Confidence 9887653
No 163
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.27 E-value=0.062 Score=50.68 Aligned_cols=127 Identities=15% Similarity=0.190 Sum_probs=87.1
Q ss_pred ChHHHHHHHHHhHHHHhhhChhhh---HHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHh-----C----------H
Q 009975 344 HWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLQ--DKVYSIRDAAANNLKRLAEEF-----G----------P 403 (521)
Q Consensus 344 ~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~-----~----------~ 403 (521)
....|.+++..+..+++..+.... ...+...+.++-. ..+|.-+.+|+..++.++... | .
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred cCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 356788899999999888765422 2222223322222 457788899999999887433 1 2
Q ss_pred HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHH
Q 009975 404 EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVL 472 (521)
Q Consensus 404 ~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l 472 (521)
+++.+.++|.|. --.+..+-+|..|+..+..+-..++.+. ...++|.+..+|.+++..|+..|+.++
T Consensus 304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~-l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQ-LLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHH-HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHH-HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 345677788777 3334568899999999999999887654 566999999999999999999998764
No 164
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=97.24 E-value=0.025 Score=57.72 Aligned_cols=137 Identities=13% Similarity=0.155 Sum_probs=86.1
Q ss_pred HHHHHHHHHcCC----CcHHHHHHHHHHHHHHHHHhCHH------HHHhhhHHHHHhhh----cCcchHHHHHHHHHHHH
Q 009975 370 KLGALCMQWLQD----KVYSIRDAAANNLKRLAEEFGPE------WAMQHITPQVLEMI----NNPHYLYRMTILRAISL 435 (521)
Q Consensus 370 ~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~l----~~~~~~~r~~a~~~l~~ 435 (521)
.++..+..++++ +.+.+|..+.-+++.+......+ ...+.+++.+...+ ...+...+..++.+||.
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 345555555554 46789999999999998755321 12245566655543 34566678889999988
Q ss_pred hhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 009975 436 LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 514 (521)
Q Consensus 436 l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l 514 (521)
+.. ......+.|++. .-.+....+|..|+.+|..+... .+....+.+++.+.+ .+.+++||..|..++-..
T Consensus 473 ~g~----~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~-~p~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 473 AGH----PSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKR-DPRKVQEVLLPIYLN--RAEPPEVRMAAVLVLMET 543 (574)
T ss_pred cCC----hhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHcC--CCCChHHHHHHHHHHHhc
Confidence 864 222233444443 22334667999999999988764 233344555555432 456888999998877543
No 165
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=97.17 E-value=0.29 Score=48.24 Aligned_cols=303 Identities=15% Similarity=0.097 Sum_probs=145.5
Q ss_pred hHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCC-CCcchhhhhhhhhhhcCCCCh---HHHHHHHHHHHHhcCCC
Q 009975 34 TCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPD---ILKTELRSIYTQLCQDD 109 (521)
Q Consensus 34 ~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~-~~~~r~~~~~~~~~~~~~~~~---~~~~~l~~~l~~l~~~~ 109 (521)
-..|-.|++.+....+.++.+.+ +.++-....+++.+ ..+.|.++..++.....+-.. ..+..++..+..-..++
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i-~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~ 82 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSI-EEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDD 82 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHH-HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCch
Confidence 35677888888888888777554 35666666666644 456788888777776655433 24555555553333333
Q ss_pred ChHHHHHHHHhHHHHHHhhCc-hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHH-Hhhhc------ChhhhhhhhHHHHH
Q 009975 110 MPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAA-LGKLL------EPQDCVAHILPVIV 181 (521)
Q Consensus 110 ~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~-l~~~~------~~~~~~~~l~~~l~ 181 (521)
+-.-|-.|. ..+.....+ ..+...+.|.+...+..-...++..-...-.. ..+.- ..+.....++.++.
T Consensus 83 d~~~~l~aL---~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~ 159 (464)
T PF11864_consen 83 DFDLRLEAL---IALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLV 159 (464)
T ss_pred hHHHHHHHH---HHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHH
Confidence 333443333 333332221 33566777777766654332222111110000 00000 00011122333333
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC-CChHHHHHHHHHhHHHHHhh--hCHHHHHHhhhHHH
Q 009975 182 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRI--LNPELAIQHILPCV 258 (521)
Q Consensus 182 ~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~~l 258 (521)
..++-..... ++.....++..+...+. ......-..++..+..+..+ ++.+. ...++..+
T Consensus 160 nviKfn~~~l----------------~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~s-l~~~i~vL 222 (464)
T PF11864_consen 160 NVIKFNFNYL----------------DEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSES-LSPCIEVL 222 (464)
T ss_pred HHHhcCCCCC----------------CHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHH-HHHHHHHH
Confidence 3222111100 00111223333333322 22233336777777777663 34433 23344444
Q ss_pred HHhccCCcHHHHHHHHHHHHccccc-cChHHHHHhHHHHHHHhhc------CCChHHHHHHHHHHHHhhhhhchhhH---
Q 009975 259 KELSSDSSQHVRSALASVIMGMAPL-LGKDATIEQLLPIFLSLLK------DEFPDVRLNIISKLDQVNQVIGIDLL--- 328 (521)
Q Consensus 259 ~~~~~d~~~~vr~~~~~~l~~i~~~-~~~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~~~~~~~~~~~--- 328 (521)
.....-. .....+-+.+..++.. .| ...+..+...+. .++..+-.+|+..+..+.-..|.+..
T Consensus 223 Csi~~~~--~l~~~~w~~m~nL~~S~~g-----~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l 295 (464)
T PF11864_consen 223 CSIVNSV--SLCKPSWRTMRNLLKSHLG-----HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSL 295 (464)
T ss_pred hhHhccc--ccchhHHHHHHHHHcCccH-----HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCccee
Confidence 3332211 2223333344444422 22 223444455552 23456667888888887655533221
Q ss_pred -hh--hHHHHHHHHhcCCChHHHHHHHHHhHHHH-hhhCh
Q 009975 329 -SQ--SLLPAIVELAEDRHWRVRLAIIEYIPLLA-SQLGV 364 (521)
Q Consensus 329 -~~--~~~~~l~~~~~~~~~~vr~~~~~~l~~l~-~~~~~ 364 (521)
.. .++|.+...++.++..+-..++..+..+. +.++.
T Consensus 296 ~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~ 335 (464)
T PF11864_consen 296 PFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGR 335 (464)
T ss_pred cccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhh
Confidence 12 38888888888888777777777777776 44443
No 166
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.09 E-value=1 Score=53.26 Aligned_cols=282 Identities=14% Similarity=0.145 Sum_probs=165.4
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh----C-HH-----HHHHhhhHHHHHhccCCcHHHHHHHHHHHHcccc
Q 009975 213 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL----N-PE-----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 282 (521)
Q Consensus 213 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~-~~-----~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~ 282 (521)
..+++.+...+..++.+++.++..++..+.... + ++ ...+.+++-+.+++.++.|.-|...+..++.+..
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 468899999999888999999999888776643 2 11 4456788888999999999999998888877776
Q ss_pred ccChHHH---HHhHHHHHHHhhcCCChHHHH----HHHHHHHHhhh----hhchhh----HhhhHHHHHHHHhcCCChHH
Q 009975 283 LLGKDAT---IEQLLPIFLSLLKDEFPDVRL----NIISKLDQVNQ----VIGIDL----LSQSLLPAIVELAEDRHWRV 347 (521)
Q Consensus 283 ~~~~~~~---~~~l~~~l~~~l~d~~~~vr~----~a~~~l~~~~~----~~~~~~----~~~~~~~~l~~~~~~~~~~v 347 (521)
.+..... ..+++..+...+.|...++-. .+-..+..+.. ..+.+. ....++..+..-+.+++..|
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 6664332 234455555555554333322 12222222211 111111 12344444444556788899
Q ss_pred HHHHHHHhHHHHhhhChhh------hHHHH-HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHH-------------
Q 009975 348 RLAIIEYIPLLASQLGVGF------FDDKL-GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM------------- 407 (521)
Q Consensus 348 r~~~~~~l~~l~~~~~~~~------~~~~l-~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~------------- 407 (521)
|..+.+.+..++...|.+. +.+.+ .|.+..-+.--...+...-+.++-.. -..|++.+.
T Consensus 1143 R~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC-~~l~p~~f~~~~~l~~l~~~~~ 1221 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFC-LSLGPCLFDFTEELYRLKRFLI 1221 (3550)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHH-HHcCCcccCchHHHHHHHHHHH
Confidence 9999999999998887642 11212 23332223332333333322222211 122222110
Q ss_pred -------hhhHHHHHhhhcCc----chHHHHHHHHHHHHhhcccCh-----HHHhhcHHHHHHhhcCCCCchHHHHHHHH
Q 009975 408 -------QHITPQVLEMINNP----HYLYRMTILRAISLLAPVMGS-----EITCSRLLPVVINASKDRVPNIKFNVAKV 471 (521)
Q Consensus 408 -------~~l~~~l~~~l~~~----~~~~r~~a~~~l~~l~~~~~~-----~~~~~~il~~l~~~l~d~~~~VR~~a~~~ 471 (521)
.+.+- +......+ --+.|.+++..++........ ..+.+.++..+++.+.-+.+.+-..+..+
T Consensus 1222 ~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~ 1300 (3550)
T KOG0889|consen 1222 ALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEG 1300 (3550)
T ss_pred Hhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 00111 11111111 234588888888877653221 22467888899998888888998888888
Q ss_pred HHHHHhh---hchHHHHhhHHHHHHHhc
Q 009975 472 LQSLIPI---VDQSMVEKTIRPCLVELT 496 (521)
Q Consensus 472 l~~~~~~---~~~~~~~~~~~~~l~~l~ 496 (521)
+..+... ++.+..+....|.+.++.
T Consensus 1301 l~~v~~~~~~~~ke~lq~~lrplL~~l~ 1328 (3550)
T KOG0889|consen 1301 LRKVLAQDVKLPKELLQSHLRPLLMNLS 1328 (3550)
T ss_pred HHhhhhccccccHHHHHhhHHHHHHhhh
Confidence 8776543 456666777778887763
No 167
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.06 E-value=0.99 Score=52.48 Aligned_cols=493 Identities=15% Similarity=0.152 Sum_probs=235.3
Q ss_pred hHHhhhhHHhhh-hcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHH
Q 009975 17 HAHVLLPPLETL-CTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK 95 (521)
Q Consensus 17 ~~~~l~~~l~~l-~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 95 (521)
++..++..+..+ ..+.++.+|......+. ..+.+...+..++-......++..+..+..+...++.++...+....
T Consensus 525 ~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl 601 (2341)
T KOG0891|consen 525 VVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVL 601 (2341)
T ss_pred HHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHh
Confidence 344455555443 34777888887777666 33333333445555555555677777888887777766655444444
Q ss_pred HHHHHHHHHhcCCC--ChHHHHHH--HHhHHHHHHhhC--chhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh
Q 009975 96 TELRSIYTQLCQDD--MPMVRRSA--ASNLGKFAATVE--PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 169 (521)
Q Consensus 96 ~~l~~~l~~l~~~~--~~~vr~~a--~~~l~~l~~~~~--~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 169 (521)
..+......+.+.- +...|... ..-+..+..... -..+...++-.+.....+....+-..+..+++.++..-+.
T Consensus 602 ~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~ 681 (2341)
T KOG0891|consen 602 PSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGE 681 (2341)
T ss_pred HHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccc
Confidence 44444333333221 11222222 222222221111 0122333444555556777778888888999999887663
Q ss_pred h--hhhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhC----CCccccchHHHHHHhcCCC-hHHHHHHHHHhHHHH
Q 009975 170 Q--DCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVG----PEPTRMDLVPAYVRLLRDN-EAEVRIAAAGKVTKF 241 (521)
Q Consensus 170 ~--~~~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~~----~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l 241 (521)
+ ...+..++.+.+.+.| .+..-|.++...++.+...-+ +-...+.++..+...+... ...+|.+++..++..
T Consensus 682 ~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~ 761 (2341)
T KOG0891|consen 682 EMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLL 761 (2341)
T ss_pred hhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhh
Confidence 3 2334677777777766 455677778888888876543 3333466777777666543 467888888888854
Q ss_pred HhhhCHHHHHHhhhHHHHHhccCCcHHH-HHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHH-HHHHHHHHHh
Q 009975 242 CRILNPELAIQHILPCVKELSSDSSQHV-RSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVR-LNIISKLDQV 319 (521)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~d~~~~v-r~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr-~~a~~~l~~~ 319 (521)
+..-+...................++.. +..+ ........ .+...-.-+-.+...++|...... ...+.+...+
T Consensus 762 g~~d~~~~~~~~~~~~~~~~~~~~k~~~~~~~~---~~~~~~~~-~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i 837 (2341)
T KOG0891|consen 762 GALDPYKHKVTEGTSASKISSEQIKSDIDISLL---ESGVNPSN-DEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHI 837 (2341)
T ss_pred cccchhHHHHHhhhhhHhhhhccccccchHHHH---Hhhhhhhh-hhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHH
Confidence 4422111100000101222222222211 0100 00001000 111111112234444555432222 2222333333
Q ss_pred hhhhchh--hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCc---HHHHHHHHHHH
Q 009975 320 NQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKV---YSIRDAAANNL 394 (521)
Q Consensus 320 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~---~~vr~~a~~~l 394 (521)
....|.+ .+...++|.+........+..+......+.......... ..+ +++.+.....+.+ -.+.......+
T Consensus 838 ~~~~~~~~~l~l~qv~~~~~~~~r~~~~~~~~f~~~q~~~~~~~~~~h-~~~-~~~~i~~~i~~~~~~~~~l~~~~~~l~ 915 (2341)
T KOG0891|consen 838 FQSLGLKCVLFLDQVIPTLIDVMRSCPPNLREFYFQQLTSLVAIVRQH-IRP-YMESIFTLIKDFWPPDTSLQITIISLI 915 (2341)
T ss_pred HHhhccchhhhHHHHHHHHHHHHHhcCcchhHHHHHhhhhhhhccchh-Hhh-hhhhHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3333322 233566666655544444555554333333222221111 111 2223333333322 22222333333
Q ss_pred HHHHHHhCHHHHH--hhhHHHHHhhhcCcchHHHHHHHHHHHHhhc-ccChHHHhhcHHHHHHhhcCCC--CchHHHHHH
Q 009975 395 KRLAEEFGPEWAM--QHITPQVLEMINNPHYLYRMTILRAISLLAP-VMGSEITCSRLLPVVINASKDR--VPNIKFNVA 469 (521)
Q Consensus 395 ~~l~~~~~~~~~~--~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~-~~~~~~~~~~il~~l~~~l~d~--~~~VR~~a~ 469 (521)
..+...++.++.. ...++.........+...|.........+.. .-+.+.+..-+.|.+++++.+. ...+|..+.
T Consensus 916 ~~i~~~l~~~f~~~l~~~~~~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l 995 (2341)
T KOG0891|consen 916 EDIAVALGGEFKKYLPELLPTMLTVLQHDKSKDRVVSRKVLQSLQKFGSNLEQYLHLLLPPIVKLFEDPTVPLSIRKSAL 995 (2341)
T ss_pred HHHHHHHHhHHHHhhhhhccchheeecccccchHHHHHHhhHHHHhcCccHHhhHhhhccHHHHHHhhhhhhHHHHhhHH
Confidence 4444444443211 1112211111111111222222222222221 1122334456778888888887 666788888
Q ss_pred HHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975 470 KVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 519 (521)
Q Consensus 470 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~ 519 (521)
.+.+.+........+...+...+.+.+.-. .+.+......+..+.+..+
T Consensus 996 ~t~~~l~~~~~~~~~~s~i~~~~~r~l~~s-~el~~~~~~~l~~l~~~~~ 1044 (2341)
T KOG0891|consen 996 ITIGRLAQQVDLSEYASRIIHPLVRVLSSS-PELRDVIMDTLIALVKQLG 1044 (2341)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHhhc
Confidence 888888877666656555555555544444 7778777777777766554
No 168
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=97.05 E-value=0.2 Score=44.18 Aligned_cols=194 Identities=15% Similarity=0.178 Sum_probs=117.3
Q ss_pred HhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHH-
Q 009975 104 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN- 182 (521)
Q Consensus 104 ~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~- 182 (521)
.+.+..++.+.....+.|..++..-. ...+.++..+..+...+....+..+.+.+..+.+.-+. ..+++.+.+..
T Consensus 8 ~l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r--~f~~L~~~L~~~ 83 (234)
T PF12530_consen 8 KLGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR--HFPFLQPLLLLL 83 (234)
T ss_pred HhcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch--HHHHHHHHHHHH
Confidence 36667788888888888888776531 45566677777777766666666667777666654211 12333333333
Q ss_pred --------hcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc-CCChHHHHHHHHHhHHHHHhhhCHHHHHHh
Q 009975 183 --------FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQH 253 (521)
Q Consensus 183 --------~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 253 (521)
.-.+..++.....+..+..++...+. ...++++.+..++ ++.++.++..+++++..+++.--- ++..
T Consensus 84 ~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vv-d~~s- 159 (234)
T PF12530_consen 84 ILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVV-DFYS- 159 (234)
T ss_pred HhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhc-cHHH-
Confidence 12345667777777788888887666 5678999999999 788889999999999998843211 1111
Q ss_pred hhHHH-HHhccCCcHHHHHHHHHHHHcccccc-Ch---HHHHHhHHHHHHHhhcCCC
Q 009975 254 ILPCV-KELSSDSSQHVRSALASVIMGMAPLL-GK---DATIEQLLPIFLSLLKDEF 305 (521)
Q Consensus 254 ~~~~l-~~~~~d~~~~vr~~~~~~l~~i~~~~-~~---~~~~~~l~~~l~~~l~d~~ 305 (521)
.+..+ .++..+..+.+-...+..+.-+...- +. +.....++..+-+.....+
T Consensus 160 ~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 160 AWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 22222 23344556666665555554433221 11 2233445555555555444
No 169
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=97.04 E-value=0.13 Score=45.40 Aligned_cols=166 Identities=13% Similarity=0.073 Sum_probs=106.3
Q ss_pred hhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHHHH--
Q 009975 27 TLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ-- 104 (521)
Q Consensus 27 ~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~-- 104 (521)
.+...+++......++.|..++.+-. .....++..+..+.+.+....+..+.+++..++...+.. ...+.+.+..
T Consensus 8 ~l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~-f~~L~~~L~~~~ 84 (234)
T PF12530_consen 8 KLGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH-FPFLQPLLLLLI 84 (234)
T ss_pred HhcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH-HHHHHHHHHHHH
Confidence 47778888889999999998888642 333455566666666665555556677777777655433 2344444333
Q ss_pred -----hc--CCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhh-cCCChhHHHHHHHHHHHHhhhc--Chhhhhh
Q 009975 105 -----LC--QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT-QDDQDSVRLLAVEGCAALGKLL--EPQDCVA 174 (521)
Q Consensus 105 -----l~--~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~ 174 (521)
.. .+..++...+...++..++...+. ....+++.+...+ ++.++.++..+++.+..+++.- .-...+.
T Consensus 85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~ 162 (234)
T PF12530_consen 85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWK 162 (234)
T ss_pred hhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 11 233556666666778888877664 7788899999998 7888899999999999998541 1112222
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHH
Q 009975 175 HILPVIVNFSQDKSWRVRYMVANQLY 200 (521)
Q Consensus 175 ~l~~~l~~~~~d~~~~vR~~~~~~l~ 200 (521)
-+.+- +..+..+.+-+..++.+.
T Consensus 163 vl~~~---l~~~~rp~v~~~l~~l~~ 185 (234)
T PF12530_consen 163 VLQKK---LSLDYRPLVLKSLCSLFA 185 (234)
T ss_pred HHHHh---cCCccchHHHHHHHHHHH
Confidence 33332 345556666555554444
No 170
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=97.01 E-value=0.41 Score=47.19 Aligned_cols=142 Identities=13% Similarity=0.109 Sum_probs=71.1
Q ss_pred hhhhhHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHhCCCccccc-hHHHHHHhcCC-ChHHHHHHHHHhHHHHHhhhCHH
Q 009975 172 CVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVGPEPTRMD-LVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPE 248 (521)
Q Consensus 172 ~~~~l~~~l~~~~~d~~-~~vR~~~~~~l~~i~~~~~~~~~~~~-l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~ 248 (521)
....++..+...|...+ ...=..+...+..+... + ..+.. +-+.+.-++.- ...+....+.+++..++...-..
T Consensus 173 ~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y-~--~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~ 249 (464)
T PF11864_consen 173 EISSLVDQICTICKSTSSEDDIEACLSVLDAIITY-G--DIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGH 249 (464)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc-C--cCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHH
Confidence 33445555555554322 22224556666655542 1 11222 22222222211 11145556666666666433222
Q ss_pred HHHHhhhHHHHHhc--c----CCcHHHHHHHHHHHHccccccChHHH----H--HhHHHHHHHhhcCCChHHHHHHHHHH
Q 009975 249 LAIQHILPCVKELS--S----DSSQHVRSALASVIMGMAPLLGKDAT----I--EQLLPIFLSLLKDEFPDVRLNIISKL 316 (521)
Q Consensus 249 ~~~~~~~~~l~~~~--~----d~~~~vr~~~~~~l~~i~~~~~~~~~----~--~~l~~~l~~~l~d~~~~vr~~a~~~l 316 (521)
..+..+...+ . .++..+-..|+..++.+....|++.. . ..++|.+...++..++.|-...+..+
T Consensus 250 ----~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i 325 (464)
T PF11864_consen 250 ----SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLI 325 (464)
T ss_pred ----HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHH
Confidence 2233333434 2 23456666888888876654433221 2 23888999988877776666666666
Q ss_pred HHhh
Q 009975 317 DQVN 320 (521)
Q Consensus 317 ~~~~ 320 (521)
..+.
T Consensus 326 ~~ll 329 (464)
T PF11864_consen 326 NRLL 329 (464)
T ss_pred HHHH
Confidence 6655
No 171
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.96 E-value=0.028 Score=58.87 Aligned_cols=171 Identities=11% Similarity=0.055 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCc
Q 009975 306 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKV 383 (521)
Q Consensus 306 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~ 383 (521)
..||..++++|+.+.+......+ ...+..+.++...++|.+|..-+..+-......... .+...+++.+...+.|.+
T Consensus 143 apVre~caq~L~~~l~~~~~s~~-~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ 221 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHMDESLI-KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSD 221 (1549)
T ss_pred hhhHHHHHHHHHHHHHhhhhHhh-HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 47999999999999888776554 677888888888889999876665554443322111 234567788889999999
Q ss_pred HHHHHHHHHHHHHHHHHhCHHHH---HhhhHHHHHhhhc---C---cchHHHHHHHHHHHHh-hcccChHH-HhhcHHHH
Q 009975 384 YSIRDAAANNLKRLAEEFGPEWA---MQHITPQVLEMIN---N---PHYLYRMTILRAISLL-APVMGSEI-TCSRLLPV 452 (521)
Q Consensus 384 ~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~---~---~~~~~r~~a~~~l~~l-~~~~~~~~-~~~~il~~ 452 (521)
.+||..|+..+..+...+ .... ...++..+...+. | +....|.-..+.+... ...+.... ....+.|-
T Consensus 222 ddv~~~aa~~l~~~~s~~-v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~ 300 (1549)
T KOG0392|consen 222 DDVRSVAAQFLVPAPSIQ-VKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPR 300 (1549)
T ss_pred hHHHHHHHHHhhhhhHHH-HhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchh
Confidence 999999999887776555 1111 1222333322221 1 1122222111111111 00011111 11356777
Q ss_pred HHhhcCCCCchHHHHHHHHHHHHHhh
Q 009975 453 VINASKDRVPNIKFNVAKVLQSLIPI 478 (521)
Q Consensus 453 l~~~l~d~~~~VR~~a~~~l~~~~~~ 478 (521)
++..+.+....||.++++.+..+.+.
T Consensus 301 ~~p~l~~~i~sv~~a~l~~l~~lle~ 326 (1549)
T KOG0392|consen 301 LWPFLRHTISSVRRAALETLAMLLEA 326 (1549)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888889999999999888764
No 172
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.05 Score=48.18 Aligned_cols=138 Identities=12% Similarity=0.161 Sum_probs=74.7
Q ss_pred HHhcCCChHHHHHHHHHhHHHHhhhChhhhH---HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHH--HhhhHH
Q 009975 338 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITP 412 (521)
Q Consensus 338 ~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~ 412 (521)
..+.+.+|......+..+..++.+... ... ..++..+.+-+++....|-.+|+.+++.+...++.... .+.++-
T Consensus 95 ~~L~s~dW~~~vdgLn~irrLs~fh~e-~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~ 173 (334)
T KOG2933|consen 95 KKLSSDDWEDKVDGLNSIRRLSEFHPE-SLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVT 173 (334)
T ss_pred HHhchHHHHHHhhhHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666554432 122 22333444556666667777777777777666654321 122222
Q ss_pred HHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc
Q 009975 413 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 480 (521)
Q Consensus 413 ~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~ 480 (521)
.|..-...+|.-+|+.|-.++..+..+..+. .+++.+...+...++.+|..++.+.......+|
T Consensus 174 ~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~----~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 174 QLLHKASQDNRFVREDAEKALVAMVNHVTPQ----KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHhhhcccchHHHHHHHHHHHHHHhccChH----HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 2222233445666777777777666654433 344555555566666666666666655554443
No 173
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.59 Score=47.11 Aligned_cols=357 Identities=13% Similarity=0.134 Sum_probs=194.7
Q ss_pred HHHHHHHHH-HhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhcChhhh
Q 009975 95 KTELRSIYT-QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQDC 172 (521)
Q Consensus 95 ~~~l~~~l~-~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~~ 172 (521)
..+-++.++ ..-+..-++=|+.|+.+|..+++.+..+.....+-|++..+-.|- ++..-..+.+++..+..+-..
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~--- 96 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS--- 96 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc---
Confidence 344444444 333445577899999999999998877766777777777777775 456667777777766554211
Q ss_pred hhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH---
Q 009975 173 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL--- 249 (521)
Q Consensus 173 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--- 249 (521)
|. ..|.+. .-.....++. ..+- ..++.+..++..+...+-.||..++..+..+....|++.
T Consensus 97 -----~~----v~dds~-qsdd~g~~ia---e~fi---k~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ 160 (970)
T KOG0946|consen 97 -----PE----VMDDST-QSDDLGLWIA---EQFI---KNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDA 160 (970)
T ss_pred -----hh----hcccch-hhhHHHHHHH---HHHH---cCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHH
Confidence 00 111111 1111111221 1111 124567777777777778888888888888888777652
Q ss_pred --HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh---HHHHHhHHHHHHHhhcCC----ChHHHHHHHHHHHHhh
Q 009975 250 --AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDE----FPDVRLNIISKLDQVN 320 (521)
Q Consensus 250 --~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~l~~~l~~~l~d~----~~~vr~~a~~~l~~~~ 320 (521)
..+.-+..+..++.|....+|..++-.+..+.+..+. -...+.++..++.++..+ ..-|...++..+..+.
T Consensus 161 ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLL 240 (970)
T KOG0946|consen 161 LLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLL 240 (970)
T ss_pred HHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence 1223345566777788888888888777777654432 223455556666665543 2356666666666665
Q ss_pred hhhc-hh-hH-hhhHHHHHHHHh-----cCC---ChHHH-H-HHHHHhHHHHhhhCh------------hhhHHHHHHHH
Q 009975 321 QVIG-ID-LL-SQSLLPAIVELA-----EDR---HWRVR-L-AIIEYIPLLASQLGV------------GFFDDKLGALC 375 (521)
Q Consensus 321 ~~~~-~~-~~-~~~~~~~l~~~~-----~~~---~~~vr-~-~~~~~l~~l~~~~~~------------~~~~~~l~~~l 375 (521)
+.=. .. .+ ....+|.+..++ .|. .|.-. . .+..++..+-..+++ ......++..+
T Consensus 241 K~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~L 320 (970)
T KOG0946|consen 241 KNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVL 320 (970)
T ss_pred hhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHH
Confidence 4321 11 11 134566666433 332 45432 2 222223222222221 12233455555
Q ss_pred HHHcCC--CcHHHHHHHHHHHHHHHHHhC--HHHHH-----------hhhHHHHHhhhcCc-chHHHHHHHHHHHHhhcc
Q 009975 376 MQWLQD--KVYSIRDAAANNLKRLAEEFG--PEWAM-----------QHITPQVLEMINNP-HYLYRMTILRAISLLAPV 439 (521)
Q Consensus 376 ~~~l~d--~~~~vr~~a~~~l~~l~~~~~--~~~~~-----------~~l~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~ 439 (521)
...+-. -..+|+.-++-+++.++.... .+.+. ..++-.++.+.++. .+..|.+...++..+.-
T Consensus 321 c~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~- 399 (970)
T KOG0946|consen 321 CTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLY- 399 (970)
T ss_pred HHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHh-
Confidence 555443 456788877777777764321 11111 22333445555554 57899999999988774
Q ss_pred cChHHHhhcHHHHHHhhcCCCCc-hHHHHHHHHH
Q 009975 440 MGSEITCSRLLPVVINASKDRVP-NIKFNVAKVL 472 (521)
Q Consensus 440 ~~~~~~~~~il~~l~~~l~d~~~-~VR~~a~~~l 472 (521)
...+-...++..++....+... .+....+.+.
T Consensus 400 -dN~~gq~~~l~tllp~~~nst~Nsl~ag~l~~~ 432 (970)
T KOG0946|consen 400 -DNDDGQRKFLKTLLPSSTNSTSNSLSAGQLLLV 432 (970)
T ss_pred -cchhhHHHHHHHHhhhhccccccchhhhhHHHH
Confidence 1222233444444444444333 4444444433
No 174
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.76 E-value=0.024 Score=41.15 Aligned_cols=83 Identities=24% Similarity=0.291 Sum_probs=63.6
Q ss_pred HHHHHHhcCCCChHHHHHHHHhHHHHHHhhC-chhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhH
Q 009975 99 RSIYTQLCQDDMPMVRRSAASNLGKFAATVE-PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL 177 (521)
Q Consensus 99 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 177 (521)
+......++|+.+-||-.+...|..++..-. .....+.++.++...++|+++.|-..|++.+..++...+. .++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-----~vl 79 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-----EVL 79 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----HHH
Confidence 3445556688888899999999999887766 4456678888999999999999999999999999987643 355
Q ss_pred HHHHHhcCC
Q 009975 178 PVIVNFSQD 186 (521)
Q Consensus 178 ~~l~~~~~d 186 (521)
|.+.+...|
T Consensus 80 ~~L~~~y~~ 88 (92)
T PF10363_consen 80 PILLDEYAD 88 (92)
T ss_pred HHHHHHHhC
Confidence 655554433
No 175
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.76 E-value=0.5 Score=49.82 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=93.6
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcc---c-ChHHHhhcHHH
Q 009975 376 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---M-GSEITCSRLLP 451 (521)
Q Consensus 376 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~---~-~~~~~~~~il~ 451 (521)
++...|-.+++|.-++..||.++..+...+.....+..+-..+.|.+-.||..++.++..+... . +-+.|.+.+-.
T Consensus 293 VHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~ 372 (1048)
T KOG2011|consen 293 VHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKD 372 (1048)
T ss_pred eeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 4446789999999999999999999988888888899999999999999999999999999875 2 22446677777
Q ss_pred HHHhhc-CCCCchHHHHHHHHHHHHHh--hhchHHHHhhHHHHHHHhcCCCCccHHHHHHHH
Q 009975 452 VVINAS-KDRVPNIKFNVAKVLQSLIP--IVDQSMVEKTIRPCLVELTEDPDVDVRFFATQA 510 (521)
Q Consensus 452 ~l~~~l-~d~~~~VR~~a~~~l~~~~~--~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~a 510 (521)
.++.+. .|-+..||...+..+-.... .+..+ .+. .+..+.-|.++.++..|..-
T Consensus 373 RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~d~----di~-~Vy~Li~d~~r~~~~aa~~f 429 (1048)
T KOG2011|consen 373 RIVEMADRDRNVSVRAVGLVLCLLLSSSGLLSDK----DIL-IVYSLIYDSNRRVAVAAGEF 429 (1048)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHhcccccChh----HHH-HHHHHHhccCcchHHHHHHH
Confidence 777776 66677788777666655432 12222 222 23445566676666655443
No 176
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.18 Score=45.95 Aligned_cols=173 Identities=14% Similarity=0.068 Sum_probs=104.1
Q ss_pred CcchhhhhhhhhhhcCCCChH---HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchh---hHH-HHHHHHHHhh
Q 009975 73 FTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH---LKT-DIMSIFEDLT 145 (521)
Q Consensus 73 ~~~r~~~~~~~~~~~~~~~~~---~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~---~~~-~l~~~l~~l~ 145 (521)
..-+..+...+....+..+.. .....+..+..++++.++.+|..|+..+++.++..+... ... .+-.++..+.
T Consensus 97 le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls 176 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS 176 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc
Confidence 344455554444444333321 122233444448889999999999999999998876521 222 3334444455
Q ss_pred cCCChhHHHHHHHHHHHHhhhcChhh---hhhhhHHHHHHhcCC--CChHHHHHHHHHHHHHHHHhCC--CccccchHHH
Q 009975 146 QDDQDSVRLLAVEGCAALGKLLEPQD---CVAHILPVIVNFSQD--KSWRVRYMVANQLYELCEAVGP--EPTRMDLVPA 218 (521)
Q Consensus 146 ~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~~~d--~~~~vR~~~~~~l~~i~~~~~~--~~~~~~l~~~ 218 (521)
.+.+..+|..|..+++.+..+..+.. ..-.-+..+...+++ .+.+.+..++..++.+...... +......++.
T Consensus 177 ~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~ 256 (342)
T KOG2160|consen 177 SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQR 256 (342)
T ss_pred cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhH
Confidence 66677889999999999988865531 112234556666666 6677778888888877764332 1222233333
Q ss_pred -HHHhcCCChHHHHHHHHHhHHHHHhhh
Q 009975 219 -YVRLLRDNEAEVRIAAAGKVTKFCRIL 245 (521)
Q Consensus 219 -l~~~l~d~~~~vr~~a~~~l~~l~~~~ 245 (521)
...+....+++++.+++.++-......
T Consensus 257 ~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 257 VLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 334445566778888877766655543
No 177
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.59 E-value=0.066 Score=44.13 Aligned_cols=116 Identities=17% Similarity=0.144 Sum_probs=83.9
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHH---HHhhhHHHHHhhhcCcchHHHHHHHHHHHHh---hcccCh
Q 009975 369 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLL---APVMGS 442 (521)
Q Consensus 369 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l---~~~~~~ 442 (521)
+..+|+++..+.+.+..-|-.|...+..+...-|.+. ...++++.+...++..+..+..+++.++..+ .+..|.
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 5688999999999888888888888888887733332 2466777778889999999999999999999 666665
Q ss_pred HH--HhhcHHHHHHhh------cC-----CCCchHHHHHHHHHHHHHhhhchHHH
Q 009975 443 EI--TCSRLLPVVINA------SK-----DRVPNIKFNVAKVLQSLIPIVDQSMV 484 (521)
Q Consensus 443 ~~--~~~~il~~l~~~------l~-----d~~~~VR~~a~~~l~~~~~~~~~~~~ 484 (521)
.- +..+++|.+.-. +. ....+++.-...+|..+-...|++.+
T Consensus 117 aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~ 171 (183)
T PF10274_consen 117 ALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAF 171 (183)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHH
Confidence 42 456777766521 11 23456777777777777776666654
No 178
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=1.7 Score=48.48 Aligned_cols=284 Identities=16% Similarity=0.111 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCc----chhhhh------hhhhhhcCC------CChHHHHHH
Q 009975 35 CVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFT----ARVSAC------GLFHIAYPS------APDILKTEL 98 (521)
Q Consensus 35 ~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~----~r~~~~------~~~~~~~~~------~~~~~~~~l 98 (521)
.+-.+++..++.++.+++++.- ..++..+.+.+...... ++..+. ..++.+... +++.++..-
T Consensus 799 s~Idta~~lfg~vfp~v~~k~~-~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~ 877 (2067)
T KOG1822|consen 799 SLIDTAVSLFGSVFPHVNNKIR-LSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSA 877 (2067)
T ss_pred HHHHHHHHHHHHhccCccHHHH-HHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHH
Confidence 4567788888888888887643 33344443433322212 111111 111211111 223344445
Q ss_pred HHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHhhhcChhhhhhh--
Q 009975 99 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQDCVAH-- 175 (521)
Q Consensus 99 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~-- 175 (521)
+.++...+...+|..|-++.++++.++...+...+...+...+..-+.+ .++..|..-.-+++.+-++.+.-...++
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~ 957 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLN 957 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcc
Confidence 5566677778899999999999999999998877666666655554444 4556677778888888887665333333
Q ss_pred -hHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHhCCCccc---cchHHHHHHhcCCCh--HHHHHHHHHhHH------HHH
Q 009975 176 -ILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEPTR---MDLVPAYVRLLRDNE--AEVRIAAAGKVT------KFC 242 (521)
Q Consensus 176 -l~~~l~~~~~d~-~~~vR~~~~~~l~~i~~~~~~~~~~---~~l~~~l~~~l~d~~--~~vr~~a~~~l~------~l~ 242 (521)
-+.++..+.+|+ +|.|+..+..++..+....++.... ..+.-...-++.++. .+|+..--+++. .+.
T Consensus 958 t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~ali 1037 (2067)
T KOG1822|consen 958 TSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALI 1037 (2067)
T ss_pred cHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHH
Confidence 344677777775 5599999999998887765543311 112222222333333 334443333333 444
Q ss_pred hhhCHH----H-------HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHH
Q 009975 243 RILNPE----L-------AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLN 311 (521)
Q Consensus 243 ~~~~~~----~-------~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~ 311 (521)
..+|++ . .....+-...-+...++..+..+++.++.++--.-++..-.+.+++.+..++....--.|..
T Consensus 1038 ttlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~~i~r~~ 1117 (2067)
T KOG1822|consen 1038 TTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSYLILRRA 1117 (2067)
T ss_pred HhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchhhhhhhh
Confidence 444332 1 00111111111224446667777777777765444555556677888887777665555555
Q ss_pred HHHHHHHh
Q 009975 312 IISKLDQV 319 (521)
Q Consensus 312 a~~~l~~~ 319 (521)
...++..+
T Consensus 1118 ~~~clrql 1125 (2067)
T KOG1822|consen 1118 SFSCLRQL 1125 (2067)
T ss_pred HHhhhhHH
Confidence 55555443
No 179
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.54 E-value=0.048 Score=39.58 Aligned_cols=81 Identities=19% Similarity=0.118 Sum_probs=56.4
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHhhhC-hhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHH
Q 009975 336 IVELAEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 414 (521)
Q Consensus 336 l~~~~~~~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l 414 (521)
....+.|+...+|..++..+..+.+.-. .....+.++.++...++|+++-|-.+|++++..++...+ +.++|.|
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-----~~vl~~L 82 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-----DEVLPIL 82 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-----HHHHHHH
Confidence 3344567777777777777777776655 333456778888888888888888888888888886653 3466666
Q ss_pred HhhhcCc
Q 009975 415 LEMINNP 421 (521)
Q Consensus 415 ~~~l~~~ 421 (521)
.+...+.
T Consensus 83 ~~~y~~~ 89 (92)
T PF10363_consen 83 LDEYADP 89 (92)
T ss_pred HHHHhCc
Confidence 6655443
No 180
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.51 E-value=1 Score=44.82 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=87.1
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhh--------hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCC
Q 009975 138 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD--------CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE 209 (521)
Q Consensus 138 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~--------~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~ 209 (521)
+..+.++++++....|+..+++++++...+..+. ..+.++.++.+-+.|.+|.+|..+.+.+..+.+.-..-
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 4456778888899999999999999988765432 23447778888899999999999999999888643322
Q ss_pred -ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC
Q 009975 210 -PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 246 (521)
Q Consensus 210 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 246 (521)
....++.....+.++|....||+.|++.++.+....+
T Consensus 381 ~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 381 VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 2235788999999999999999999999988776544
No 181
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.47 E-value=0.47 Score=50.42 Aligned_cols=169 Identities=18% Similarity=0.240 Sum_probs=103.4
Q ss_pred HHHHHHhHHHHHhhhCHHHH--HHhhhHHHHH----hccCCcHHHHHHHHHHHHccccccChHHH-HHhHHHHHHHhhcC
Q 009975 231 RIAAAGKVTKFCRILNPELA--IQHILPCVKE----LSSDSSQHVRSALASVIMGMAPLLGKDAT-IEQLLPIFLSLLKD 303 (521)
Q Consensus 231 r~~a~~~l~~l~~~~~~~~~--~~~~~~~l~~----~~~d~~~~vr~~~~~~l~~i~~~~~~~~~-~~~l~~~l~~~l~d 303 (521)
|..|--+|..+++..|..-+ ...+...+.. ..+..+..+ ...+.+..++..++.... .-..+|.+..+...
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~--~s~~vf~s~~~~m~s~l~~~~~~l~~l~~~~~s 827 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFL--SSFEVFNSLAPLMHSFLHPLGSLLPRLFFFVRS 827 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchh--hhHHHHHHHHHhhhhhhhhhhhhhhHHHHhccc
Confidence 77788888888888877532 2233333322 222121100 011111111212222110 12467888889999
Q ss_pred CChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHh-HHHHhhh--ChhhhHHHHHHHHHHHcC
Q 009975 304 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI-PLLASQL--GVGFFDDKLGALCMQWLQ 380 (521)
Q Consensus 304 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l-~~l~~~~--~~~~~~~~l~~~l~~~l~ 380 (521)
....+|.+++.+++.+.+....+.. ..++..+.-+.++.+.-+|...+..+ ..+.... +-..+...++|.++..+.
T Consensus 828 ~~~a~r~~~ar~i~~~~k~~~~e~m-~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ms 906 (1549)
T KOG0392|consen 828 IHIAVRYAAARCIGTMFKSATRETM-ATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMS 906 (1549)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccc
Confidence 9999999999999999876555443 34455555556666656665554443 3333332 223556678899999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHhC
Q 009975 381 DKVYSIRDAAANNLKRLAEEFG 402 (521)
Q Consensus 381 d~~~~vr~~a~~~l~~l~~~~~ 402 (521)
|....||.++-+++..+....+
T Consensus 907 d~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 907 DQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred cchHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999987663
No 182
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.45 E-value=0.85 Score=43.20 Aligned_cols=230 Identities=13% Similarity=0.061 Sum_probs=133.7
Q ss_pred hHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcCh-hHHHHhHHHH-H-HHhhcC-CCCcchhhhhhhhhhhcCC--C
Q 009975 17 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-SDLVDWYIPL-V-KRLAAG-EWFTARVSACGLFHIAYPS--A 90 (521)
Q Consensus 17 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~-~~~~~~l~p~-i-~~~~~~-~~~~~r~~~~~~~~~~~~~--~ 90 (521)
.+..+.+.++.++-++++.||.++.+.+..++..-.. +.+.+.=++. + ..+..+ +....|..|+.++..+... .
T Consensus 22 ~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~ 101 (371)
T PF14664_consen 22 VLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG 101 (371)
T ss_pred hHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC
Confidence 3445666666544455599999999999887775322 2222222222 2 333333 3456788898888776644 3
Q ss_pred ChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh
Q 009975 91 PDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ 170 (521)
Q Consensus 91 ~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~ 170 (521)
+...-..+...+..+..+++...|..+.+.|.+++-..++-.....-+..+.+.+.|.........+.++-.+...-...
T Consensus 102 ~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 102 PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence 43445567777778888888899999999999988665543333333444444445444445555555555554432111
Q ss_pred h------hhhhhHHHHHHh----cCCCCh-HHHHHHHHHHHHHHHHhCCCcc----ccchHHHHHHhcCCChHHHHHHHH
Q 009975 171 D------CVAHILPVIVNF----SQDKSW-RVRYMVANQLYELCEAVGPEPT----RMDLVPAYVRLLRDNEAEVRIAAA 235 (521)
Q Consensus 171 ~------~~~~l~~~l~~~----~~d~~~-~vR~~~~~~l~~i~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~a~ 235 (521)
. ....++..+... .++... +.-+.+..++..+.+.+.+-.. ...-+.-++..+.-+.+++|...+
T Consensus 182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Il 261 (371)
T PF14664_consen 182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAIL 261 (371)
T ss_pred hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHH
Confidence 1 111233333332 122221 2334455667777776654221 114566677788888899999999
Q ss_pred HhHHHHHhhhC
Q 009975 236 GKVTKFCRILN 246 (521)
Q Consensus 236 ~~l~~l~~~~~ 246 (521)
..+-.+...-.
T Consensus 262 dll~dllrik~ 272 (371)
T PF14664_consen 262 DLLFDLLRIKP 272 (371)
T ss_pred HHHHHHHCCCC
Confidence 98888777543
No 183
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.44 E-value=0.79 Score=44.44 Aligned_cols=215 Identities=13% Similarity=0.162 Sum_probs=107.1
Q ss_pred ChhHHHHHHHHHHHHhhhcCh--hhhhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhCCC------ccccchHHHH
Q 009975 149 QDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPE------PTRMDLVPAY 219 (521)
Q Consensus 149 ~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~~~~------~~~~~l~~~l 219 (521)
|+.+-+...+++....+.+.+ ....+++..++...+++ .+|.--....++++.+.+...+. ...+.++|.+
T Consensus 43 NeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f 122 (435)
T PF03378_consen 43 NEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPF 122 (435)
T ss_dssp -HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Confidence 444444444544444433322 12344455555555555 56677777888888777765432 1245688888
Q ss_pred HHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHH---HHHHHHHccccccCh----HHHHHh
Q 009975 220 VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRS---ALASVIMGMAPLLGK----DATIEQ 292 (521)
Q Consensus 220 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~---~~~~~l~~i~~~~~~----~~~~~~ 292 (521)
...++.+-.+.--.+...++.+.+..+.....+.+...+..++...-|.-|. +++..+..+.+.-+. ....+.
T Consensus 123 ~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~ 202 (435)
T PF03378_consen 123 QEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEP 202 (435)
T ss_dssp HHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHH
Confidence 8888766555666677777777777663333333344444444444443221 122222222221111 112345
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHh---hhHHHHHHH-HhcCCChHHHHHHHHHhHHHHhhhChh
Q 009975 293 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVG 365 (521)
Q Consensus 293 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~---~~~~~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~~~~ 365 (521)
++.++.+++.....+ ..+..-+..+...++.+.+. +.++-.+.. +-+.+.++.+..++..++.++-..|.+
T Consensus 203 iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~ 277 (435)
T PF03378_consen 203 ILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPD 277 (435)
T ss_dssp HHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHH
Confidence 677777888766433 33556677777777665542 223333322 334566666666666666665555544
No 184
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=96.39 E-value=1.3 Score=44.61 Aligned_cols=269 Identities=15% Similarity=0.166 Sum_probs=138.3
Q ss_pred HHHHHHHHhHHHHHhhhCHHHHHHhhhHHH---HHhccCCcHHHHHHHHHHHHccccccChHH------------HHHhH
Q 009975 229 EVRIAAAGKVTKFCRILNPELAIQHILPCV---KELSSDSSQHVRSALASVIMGMAPLLGKDA------------TIEQL 293 (521)
Q Consensus 229 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l---~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~------------~~~~l 293 (521)
++|+---.-+..+ ..++++-+...+-..+ ....+..+|..-+.++..+-.+++.+.... ....+
T Consensus 414 e~RkkLk~fqdti-~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~ 492 (980)
T KOG2021|consen 414 EVRKKLKNFQDTI-VVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLN 492 (980)
T ss_pred HHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHH
Confidence 4565433333333 3345655444444444 334566788888888888877776553221 11223
Q ss_pred HHHHH--HhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHh------cCCChHHHHHHHHHhHHHHhhhChh
Q 009975 294 LPIFL--SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA------EDRHWRVRLAIIEYIPLLASQLGVG 365 (521)
Q Consensus 294 ~~~l~--~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~vr~~~~~~l~~l~~~~~~~ 365 (521)
.+.+. ..+..+++-|..--.+.+-+..+.+..+ ..-+|.+.... .+.+..||..+.-.+..+.+.+.+.
T Consensus 493 ~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e---sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkq 569 (980)
T KOG2021|consen 493 ELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE---SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQ 569 (980)
T ss_pred HHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc---hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHH
Confidence 33332 2344556667666666666555444433 34566655533 4567889988888888888887654
Q ss_pred h--hHHHHHHHHHHHcCCC----c--------HHHHHHHHHHHHHHHHHh--CHH------------HHHhhhHHHH-Hh
Q 009975 366 F--FDDKLGALCMQWLQDK----V--------YSIRDAAANNLKRLAEEF--GPE------------WAMQHITPQV-LE 416 (521)
Q Consensus 366 ~--~~~~l~~~l~~~l~d~----~--------~~vr~~a~~~l~~l~~~~--~~~------------~~~~~l~~~l-~~ 416 (521)
. |.+.++.-+..+|... + .+-..-..+++|.++..- ..+ ...+.++-.+ ..
T Consensus 570 lvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~ 649 (980)
T KOG2021|consen 570 LVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQ 649 (980)
T ss_pred HHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHH
Confidence 2 2333333333333110 0 011111122222221100 000 0111222222 22
Q ss_pred hhcCcchHH----HHHHHHHHHHhhcccC----------hHHHhhcHHHHHHhhcCC--CCchHHHHHHHHHHHHHhhhc
Q 009975 417 MINNPHYLY----RMTILRAISLLAPVMG----------SEITCSRLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVD 480 (521)
Q Consensus 417 ~l~~~~~~~----r~~a~~~l~~l~~~~~----------~~~~~~~il~~l~~~l~d--~~~~VR~~a~~~l~~~~~~~~ 480 (521)
+..|....+ -..++.+++.+++.+. .......++..++..+.- ....+|.+.-.+++.+...+|
T Consensus 650 lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg 729 (980)
T KOG2021|consen 650 LASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILG 729 (980)
T ss_pred HhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcc
Confidence 334443333 2455667777776332 222233444444444432 366799999999999999988
Q ss_pred hHHHHhhHHHHHHHhcCCCCcc
Q 009975 481 QSMVEKTIRPCLVELTEDPDVD 502 (521)
Q Consensus 481 ~~~~~~~~~~~l~~l~~D~~~~ 502 (521)
++.+ +.+-..+..+++|.|.+
T Consensus 730 ~~vl-Pfipklie~lL~s~d~k 750 (980)
T KOG2021|consen 730 NKVL-PFIPKLIELLLSSTDLK 750 (980)
T ss_pred hhhh-cchHHHHHHHHhcCCHH
Confidence 7654 55555566678888776
No 185
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=96.32 E-value=0.87 Score=41.99 Aligned_cols=66 Identities=20% Similarity=0.274 Sum_probs=47.2
Q ss_pred hhhhhhhhhhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhc
Q 009975 76 RVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ 146 (521)
Q Consensus 76 r~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~ 146 (521)
+..+..++...+++.|+- -.+-+..-..++.|.+-.||+.|++.|..+++. .....+.+.+.++++
T Consensus 41 k~lasq~ip~~fk~fp~l-a~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 41 KRLASQFIPRFFKHFPSL-ADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLN 106 (460)
T ss_pred HHHHHHHHHHHHhhCchh-hhHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHH
Confidence 345566777777777754 566777778889999999999999999888864 334445555555554
No 186
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.27 E-value=0.15 Score=42.44 Aligned_cols=126 Identities=20% Similarity=0.186 Sum_probs=64.6
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHH
Q 009975 374 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV 453 (521)
Q Consensus 374 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l 453 (521)
++...+.|+++.+|.+|+.++..+.+.... .+..-.+ .+.+.-. =...-..++.+. ..+-..+
T Consensus 44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk~------~L~~Ae~-~~~~~~s-FtslS~tLa~~i---------~~lH~~L 106 (182)
T PF13251_consen 44 LLTCILKDPSPKVRAAAASALAALLEGSKP------FLAQAEE-SKGPSGS-FTSLSSTLASMI---------MELHRGL 106 (182)
T ss_pred hhHHHHcCCchhHHHHHHHHHHHHHHccHH------HHHHHHh-cCCCCCC-cccHHHHHHHHH---------HHHHHHH
Confidence 344567899999999999999988865321 1111110 0111000 000011111111 1122223
Q ss_pred Hhhc-CCCCchHHHHHHHHHHHHHhhhc----hHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975 454 INAS-KDRVPNIKFNVAKVLQSLIPIVD----QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 454 ~~~l-~d~~~~VR~~a~~~l~~~~~~~~----~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~ 516 (521)
...+ .+.+..+-...++++..+++..+ +..+...+...+..+..+.|.+||..+..+++.+..
T Consensus 107 l~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 107 LLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 3332 23355566667777777665432 234445555666666666777777777777776653
No 187
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=96.26 E-value=1.3 Score=44.09 Aligned_cols=147 Identities=18% Similarity=0.096 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch---hhHHHHHHH---------HHHhh--cCCChhHHHHHHHH
Q 009975 94 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSI---------FEDLT--QDDQDSVRLLAVEG 159 (521)
Q Consensus 94 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~---------l~~l~--~d~~~~vr~~a~~~ 159 (521)
+.+.+...+..-.++.+..+|-.++..+..+.+.++-. .+.+ +... +..-. -+.++.+...++..
T Consensus 243 ~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~-ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~ 321 (993)
T COG5234 243 YLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFID-IIELMTENMFLSPLENTCDIIITNELVWHGAILF 321 (993)
T ss_pred HHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHH-HHHhcccccchhhhhCccceeecchHHHHHHHHH
Confidence 45556666666667778999999999999999887742 1111 1111 11111 12345555555555
Q ss_pred HHHHhhhcChhhhhhhhHHHHHHhcCC--------CChHHHHHHHHHHHHHHHHhCCCccc---cchHHHHHH-hcCCCh
Q 009975 160 CAALGKLLEPQDCVAHILPVIVNFSQD--------KSWRVRYMVANQLYELCEAVGPEPTR---MDLVPAYVR-LLRDNE 227 (521)
Q Consensus 160 l~~l~~~~~~~~~~~~l~~~l~~~~~d--------~~~~vR~~~~~~l~~i~~~~~~~~~~---~~l~~~l~~-~l~d~~ 227 (521)
++ ++...+=+....-+.|++.+.++= +...+|.+++-.+-.+.+...+...+ ..++-.+.+ .+-|++
T Consensus 322 ~a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpe 400 (993)
T COG5234 322 FA-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPE 400 (993)
T ss_pred HH-HhhccccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCch
Confidence 44 444433222222366666665542 22246666665555554443322221 124444444 678999
Q ss_pred HHHHHHHHHhHHHHH
Q 009975 228 AEVRIAAAGKVTKFC 242 (521)
Q Consensus 228 ~~vr~~a~~~l~~l~ 242 (521)
-.+|.+|..++-++.
T Consensus 401 l~vRr~a~Aal~E~i 415 (993)
T COG5234 401 LNVRRAATAALFEVI 415 (993)
T ss_pred hhhhhHHHHHHHHHh
Confidence 999999887776543
No 188
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.24 E-value=1.2 Score=42.77 Aligned_cols=196 Identities=13% Similarity=0.120 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHH
Q 009975 38 DKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSA 117 (521)
Q Consensus 38 ~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a 117 (521)
.+..+.+-.+....+.+++.++++-++.+++.++.. |.... .......+ .... .+..++..+++.+...+
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~--~~~~f---~~~~~~~~-~~~~----~fl~lL~~~d~~i~~~a 121 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDT--RVKLF---HDDALLKK-KTWE----PFFNLLNRQDQFIVHMS 121 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchH--HHHHH---HHHhhccc-cchH----HHHHHHcCCchhHHHHH
Confidence 345566666777777788888999999888877532 22111 11111111 1122 22234556788999999
Q ss_pred HHhHHHHHHhhCc---hhhHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhcChh-hh-hhhhHHHHHHhcCC--CCh
Q 009975 118 ASNLGKFAATVEP---AHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQ-DC-VAHILPVIVNFSQD--KSW 189 (521)
Q Consensus 118 ~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~-~~-~~~l~~~l~~~~~d--~~~ 189 (521)
+..+..++..-.. ....+.+.+.+...+... +......++.++..+...-.-. .. ....++.+...+.. .+.
T Consensus 122 ~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~ 201 (429)
T cd00256 122 FSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGF 201 (429)
T ss_pred HHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccH
Confidence 9999998764322 112333555555555433 3455666778887776542211 11 12244444444432 244
Q ss_pred HHHHHHHHHHHHHHHH--hCCCccccchHHHHHHhcCCCh-HHHHHHHHHhHHHHHh
Q 009975 190 RVRYMVANQLYELCEA--VGPEPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCR 243 (521)
Q Consensus 190 ~vR~~~~~~l~~i~~~--~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~ 243 (521)
...+.++-++-.+.-. .........++|.+.+.+++.. ..|-+.++.+|..+..
T Consensus 202 Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 202 QLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 5666666555443321 1111223568888888887643 3344445555555555
No 189
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.6 Score=42.65 Aligned_cols=175 Identities=15% Similarity=0.141 Sum_probs=113.6
Q ss_pred CchhHHHHHHHHHHHHHHhhcChh--HHH-HhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHH-----HHHHHHHH
Q 009975 31 VEETCVRDKAVESLCRIGSQMRES--DLV-DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDIL-----KTELRSIY 102 (521)
Q Consensus 31 ~~~~~vR~~a~~~l~~i~~~~~~~--~~~-~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-----~~~l~~~l 102 (521)
+.+..-|..|..-|..+++.++.- .+. ..+.|.+. ..++.+..+|..|...++..+.+.|... ...+-.++
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 456778889999999999998753 222 23445454 7788888999999999999998877541 12233455
Q ss_pred HHhcCCCChHHHHHHHHhHHHHHHhhCchh---hHHHHHHHHHHhhcCC--ChhHHHHHHHHHHHHhhhcChh--hhhhh
Q 009975 103 TQLCQDDMPMVRRSAASNLGKFAATVEPAH---LKTDIMSIFEDLTQDD--QDSVRLLAVEGCAALGKLLEPQ--DCVAH 175 (521)
Q Consensus 103 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~~--~~~~~ 175 (521)
..+.++++..+|..|..+++.+.+...+-. ..-.=...+...++++ +...+..++..+..+...-..+ .....
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 566677788899999999999998876421 1111134555666664 4456667778888777653321 12222
Q ss_pred hHH-HHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 009975 176 ILP-VIVNFSQDKSWRVRYMVANQLYELCEAV 206 (521)
Q Consensus 176 l~~-~l~~~~~d~~~~vR~~~~~~l~~i~~~~ 206 (521)
.++ .+..+....++.++..+...+-......
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 333 3344555567778887777665555433
No 190
>PF05536 Neurochondrin: Neurochondrin
Probab=96.18 E-value=1.6 Score=43.77 Aligned_cols=177 Identities=15% Similarity=0.139 Sum_probs=112.7
Q ss_pred ChhHHHHHHHHHHHHhhhcChh----hhhhhhHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHhCC--CccccchHHHHHH
Q 009975 149 QDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQDKSW-RVRYMVANQLYELCEAVGP--EPTRMDLVPAYVR 221 (521)
Q Consensus 149 ~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~d~~~-~vR~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~ 221 (521)
....+..|+.++..++. +++ ...-.-+|.+.+.+...+. .+-..+.+++..++..-.+ .......++.+.+
T Consensus 70 ~~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~e 147 (543)
T PF05536_consen 70 PEEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCE 147 (543)
T ss_pred HHHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHH
Confidence 34667788888888776 222 1223356777777766555 7778888888877732111 1122445666666
Q ss_pred hcCCChHHHHHHHHHhHHHHHhhhCHHH------HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccC--------hH
Q 009975 222 LLRDNEAEVRIAAAGKVTKFCRILNPEL------AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--------KD 287 (521)
Q Consensus 222 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~------~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~--------~~ 287 (521)
...+ .+.....|+..+..+....+.+. ....+++.+...+.......|-.++..++.+....+ ..
T Consensus 148 i~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~ 226 (543)
T PF05536_consen 148 IIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSP 226 (543)
T ss_pred HHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChh
Confidence 6555 45667788888888777666332 223455666666655555566677777777765552 12
Q ss_pred HHHHhHHHHHHHhhcC-CChHHHHHHHHHHHHhhhhhchhhH
Q 009975 288 ATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLL 328 (521)
Q Consensus 288 ~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~ 328 (521)
.+...+...+..+++. ..+.-|..++.....+.+..|.+++
T Consensus 227 ~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl 268 (543)
T PF05536_consen 227 KWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWL 268 (543)
T ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhh
Confidence 3445666667776665 4578899999999999998887654
No 191
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.17 E-value=0.98 Score=42.00 Aligned_cols=170 Identities=17% Similarity=0.185 Sum_probs=90.4
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHhhhChhhhH--HHHHHHHHHHcCC----CcHHHHHHHHHHHHHHHHH--hCHHHHH
Q 009975 336 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLQD----KVYSIRDAAANNLKRLAEE--FGPEWAM 407 (521)
Q Consensus 336 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~--~~~~~~~ 407 (521)
+.++++.+++.+...++..+..+....+..... ..+++.+++++++ ++..++..++.+++.+... +...+..
T Consensus 110 fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~ 189 (312)
T PF03224_consen 110 FLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK 189 (312)
T ss_dssp HHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh
Confidence 334666667777777777777776665543222 2445555555443 4556667778888777632 2222334
Q ss_pred hhhHHHHHhhh-----cC--cchHHHHHHHHHHHHhhc--ccChHHHhhcHHHHHHhhcCCC-CchHHHHHHHHHHHHHh
Q 009975 408 QHITPQVLEMI-----NN--PHYLYRMTILRAISLLAP--VMGSEITCSRLLPVVINASKDR-VPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 408 ~~l~~~l~~~l-----~~--~~~~~r~~a~~~l~~l~~--~~~~~~~~~~il~~l~~~l~d~-~~~VR~~a~~~l~~~~~ 477 (521)
...++.+.+.+ .+ .+.++...++.++-.+.= ..-.......++|.+...+++. ...|-+-++.++.+++.
T Consensus 190 ~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~ 269 (312)
T PF03224_consen 190 SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLS 269 (312)
T ss_dssp HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTS
T ss_pred cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 55566666665 22 345555555555554431 1112223355888888877653 44555567777777776
Q ss_pred hhc----hHHHHhhHHHHHHHhcCC--CCccHHH
Q 009975 478 IVD----QSMVEKTIRPCLVELTED--PDVDVRF 505 (521)
Q Consensus 478 ~~~----~~~~~~~~~~~l~~l~~D--~~~~vr~ 505 (521)
... ...+...+++.+..+... .|+++..
T Consensus 270 ~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~e 303 (312)
T PF03224_consen 270 KAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTE 303 (312)
T ss_dssp SSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHH
T ss_pred ccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHH
Confidence 533 233446677777777654 3555543
No 192
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.13 E-value=0.094 Score=43.59 Aligned_cols=168 Identities=19% Similarity=0.175 Sum_probs=86.8
Q ss_pred HHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHH
Q 009975 230 VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVR 309 (521)
Q Consensus 230 vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr 309 (521)
||.+|+.+|..+.+..++..+.. .++.+ +-|. ..-+ ...-.+.+.-++.|+++.+|
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~-yW~~l---lP~~----------------~~~~----~~~~~sLlt~il~Dp~~kvR 57 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFG-YWPAL---LPDS----------------VLQG----RPATPSLLTCILKDPSPKVR 57 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHh-hHHHH---CCCC----------------CCcC----CCCCcchhHHHHcCCchhHH
Confidence 68888888888888765544322 22222 2222 0000 01112344556789999999
Q ss_pred HHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHH-HHHHHcCCCcHHHHH
Q 009975 310 LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA-LCMQWLQDKVYSIRD 388 (521)
Q Consensus 310 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~-~l~~~l~d~~~~vr~ 388 (521)
.+|+..+..+.+... +.+... ++...+ + ..+..++..+|.-. . .+-. ++..+-.+.+..+-.
T Consensus 58 ~aA~~~l~~lL~gsk---------~~L~~A-e~~~~~-~----~sFtslS~tLa~~i-~-~lH~~Ll~~L~~E~~~~~l~ 120 (182)
T PF13251_consen 58 AAAASALAALLEGSK---------PFLAQA-EESKGP-S----GSFTSLSSTLASMI-M-ELHRGLLLALQAEKSPPVLT 120 (182)
T ss_pred HHHHHHHHHHHHccH---------HHHHHH-HhcCCC-C----CCcccHHHHHHHHH-H-HHHHHHHHHHhcccccHHHH
Confidence 999999999876432 111111 111100 0 01111111122110 0 1111 122223445566666
Q ss_pred HHHHHHHHHHHHhCH----HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhc
Q 009975 389 AAANNLKRLAEEFGP----EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP 438 (521)
Q Consensus 389 ~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~ 438 (521)
..++++..++....- ..+...++..+...+.+.+..+|..++.+++.+..
T Consensus 121 q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 121 QLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 677777777654421 23455666777777777777777777777777765
No 193
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=2.9 Score=45.98 Aligned_cols=152 Identities=9% Similarity=0.039 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHH--HHhC-HHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccC
Q 009975 366 FFDDKLGALCMQ-WLQDKVYSIRDAAANNLKRLA--EEFG-PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 441 (521)
Q Consensus 366 ~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~--~~~~-~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~ 441 (521)
...+.++..+.. ...+..|.+|.++++.+..++ ..++ .+...+.+...+...++|.+-.+|+.|+.++..+...--
T Consensus 1522 ~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~ 1601 (1710)
T KOG1851|consen 1522 HLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSK 1601 (1710)
T ss_pred hhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccc
Confidence 334445555543 345678999999998887764 2233 222346677778888999999999999999999886322
Q ss_pred hHHHhhcHHHHHHhhcCCCCchHHH-HHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 009975 442 SEITCSRLLPVVINASKDRVPNIKF-NVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 518 (521)
Q Consensus 442 ~~~~~~~il~~l~~~l~d~~~~VR~-~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~ 518 (521)
........-+............++. .|.-.|+.++-+++.. -+....+-.+...++|+ ..++..+.+++......+
T Consensus 1602 ~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth 1680 (1710)
T KOG1851|consen 1602 FQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTH 1680 (1710)
T ss_pred cccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHh
Confidence 1111222222333333333334443 6777888887766532 23344445555566776 678888888888766554
No 194
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=96.11 E-value=1.7 Score=43.36 Aligned_cols=196 Identities=18% Similarity=0.172 Sum_probs=97.5
Q ss_pred ChhhhhccccCCCcch---hHH--------hhhhHHhhhhc--CchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHh
Q 009975 1 MAEELGVFIPYVGGVE---HAH--------VLLPPLETLCT--VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRL 67 (521)
Q Consensus 1 ~a~~l~~~~~~~~~~~---~~~--------~l~~~l~~l~~--~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~ 67 (521)
+|+.+.+.+.++++.- +.+ .++..|++-++ +.++-+-..++--++ ++...+-+-....+.|.+...
T Consensus 266 ~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~id~~d~~i~~iI~kg 344 (993)
T COG5234 266 AAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGAGLIDYSDCLILPIIEKG 344 (993)
T ss_pred HHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhccccchhhhhhhhheccc
Confidence 4677778888888762 111 24444554444 334444444443333 444333333233466766554
Q ss_pred hc-C-------CCCcchhhhhhhhhhhcCC----CChHHHHHHHHHHHH-hcCCCChHHHHHHHHhHHHHHHhhCchhhH
Q 009975 68 AA-G-------EWFTARVSACGLFHIAYPS----APDILKTELRSIYTQ-LCQDDMPMVRRSAASNLGKFAATVEPAHLK 134 (521)
Q Consensus 68 ~~-~-------~~~~~r~~~~~~~~~~~~~----~~~~~~~~l~~~l~~-l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 134 (521)
++ + +-..+|.+++-.+=..+.. ..+.....+.-++.+ ..-|++-.+|++|..+|.++..........
T Consensus 345 ~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~iGR~~s~a~g 424 (993)
T COG5234 345 LSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVIGRHASIADG 424 (993)
T ss_pred cceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHhccCCCcccc
Confidence 44 1 1124555555333222221 223333345555544 677899999999999998876552222222
Q ss_pred HHHHHHHHHhhcCCChhH-HHH-HHHHHHHHhhhcChh-hhhhhhHH-HHHHhcCCCChHHHHHHHHHHHHHHH
Q 009975 135 TDIMSIFEDLTQDDQDSV-RLL-AVEGCAALGKLLEPQ-DCVAHILP-VIVNFSQDKSWRVRYMVANQLYELCE 204 (521)
Q Consensus 135 ~~l~~~l~~l~~d~~~~v-r~~-a~~~l~~l~~~~~~~-~~~~~l~~-~l~~~~~d~~~~vR~~~~~~l~~i~~ 204 (521)
..++.++. ...| |.. ....+.......++- .+. +++. .+.+.+.+-++.++....-++..+.+
T Consensus 425 ~~lIslIN------~~sv~r~s~csg~~~r~~~~~~k~~~Ce-dVF~diLl~Nl~H~~~~~k~~~~y~l~~liK 491 (993)
T COG5234 425 LSLISLIN------YVSVTRISNCSGDLCRKVAHFPKFRSCE-DVFQDILLTNLQHWDVKVKQLSAYSLRQLIK 491 (993)
T ss_pred hhhhhhcc------ceecchhhhcchHHHHHhcCccccchHH-HHHHHHHHhhhhccchhhhhhccccHHHHhc
Confidence 23333331 1111 111 112222222222221 222 3333 36667778888899988888887754
No 195
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.08 E-value=1.4 Score=42.24 Aligned_cols=68 Identities=21% Similarity=0.209 Sum_probs=45.7
Q ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHHHhhhc--hHHHH-hhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975 449 LLPVVINASK-DRVPNIKFNVAKVLQSLIPIVD--QSMVE-KTIRPCLVELTEDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 449 il~~l~~~l~-d~~~~VR~~a~~~l~~~~~~~~--~~~~~-~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~ 516 (521)
++..+..++. ..++.+-.-||.=+|.++..++ ..... -.....+=++++++|++||..|..|++.++-
T Consensus 354 llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 354 LLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4455555553 3345556778888888888763 33222 3355556677888899999999999988753
No 196
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=96.01 E-value=2 Score=43.32 Aligned_cols=455 Identities=13% Similarity=0.140 Sum_probs=229.5
Q ss_pred chhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhh----hhcCCCCh----HHHHHHHHHHH
Q 009975 32 EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFH----IAYPSAPD----ILKTELRSIYT 103 (521)
Q Consensus 32 ~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~----~~~~~~~~----~~~~~l~~~l~ 103 (521)
-|+..|+.|+.-++.+=.. | ..++..+..+.+-- .+..+|.-+...+. .-+..... .++..+...+.
T Consensus 17 vdsa~KqqA~~y~~qiKsS--p-~aw~Icie~l~~~t--s~d~vkf~clqtL~e~vrekyne~nl~elqlvR~sv~swlk 91 (980)
T KOG2021|consen 17 VDSATKQQAIEYLNQIKSS--P-NAWEICIELLINET--SNDLVKFYCLQTLIELVREKYNEANLNELQLVRFSVTSWLK 91 (980)
T ss_pred ccHHHHHHHHHHHHhhcCC--c-cHHHHHHHHHHhhc--ccchhhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 3678888888877765432 2 23444454443322 11223332322221 11221211 15677777776
Q ss_pred Hhc-CCC----ChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHH-hhcCCChhHHHHHHHHHHHHhhhcCh--------
Q 009975 104 QLC-QDD----MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFED-LTQDDQDSVRLLAVEGCAALGKLLEP-------- 169 (521)
Q Consensus 104 ~l~-~~~----~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-l~~d~~~~vr~~a~~~l~~l~~~~~~-------- 169 (521)
... .++ -+.++.++++.+..+.-...+. .|+.+..-+.. ...++...--..-++.+..+.+.+.+
T Consensus 92 ~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~-~WnsfF~dlmsv~~~~s~~~~~dfflkvllaIdsEiad~dv~rT~e 170 (980)
T KOG2021|consen 92 FQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPD-CWNSFFDDLMSVFQVDSAISGLDFFLKVLLAIDSEIADQDVIRTKE 170 (980)
T ss_pred HHHhCcccCCCChHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhcccchhhHHHHHHHHHHhhhHhhhccccCChH
Confidence 543 333 4679999999999877554432 34433333222 22222221122333444443332211
Q ss_pred ---------hhhhhhhHH--------HHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcc-ccchHHHHHHhcCCChHHHH
Q 009975 170 ---------QDCVAHILP--------VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLRDNEAEVR 231 (521)
Q Consensus 170 ---------~~~~~~l~~--------~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr 231 (521)
+..+..-+| ++...-+..++.+-..+.++++++..-+.-... .+..++.+.+++. -.++|
T Consensus 171 ei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR 248 (980)
T KOG2021|consen 171 EILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELR 248 (980)
T ss_pred HHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHH
Confidence 111111111 222222334888889999999999887664332 3557888888887 46899
Q ss_pred HHHHHhHHHHHhhh-CHHHHHHhhhHHHHH-------hccC--CcHHHHHHHHHHHHcccccc-----------Ch---H
Q 009975 232 IAAAGKVTKFCRIL-NPELAIQHILPCVKE-------LSSD--SSQHVRSALASVIMGMAPLL-----------GK---D 287 (521)
Q Consensus 232 ~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~-------~~~d--~~~~vr~~~~~~l~~i~~~~-----------~~---~ 287 (521)
.+|+.++-.+...- .|.+ +=.++..+.+ ...| .+..+-+...+.+..++..+ .. +
T Consensus 249 ~aac~cilaiVsKkMkP~d-KL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kq 327 (980)
T KOG2021|consen 249 IAACNCILAIVSKKMKPMD-KLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQ 327 (980)
T ss_pred HHHHHHHHHHHhcCCChhH-HHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHH
Confidence 99999998876643 3321 1112222211 1122 33333344444443332211 10 0
Q ss_pred H---HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchh---------hHhhhHHHHHHHHh------cCCC-----
Q 009975 288 A---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---------LLSQSLLPAIVELA------EDRH----- 344 (521)
Q Consensus 288 ~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---------~~~~~~~~~l~~~~------~~~~----- 344 (521)
. ....++|.+++.+.+++.++-.+....+......+... .+...+...+.++. .|.+
T Consensus 328 n~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~E 407 (980)
T KOG2021|consen 328 NVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDE 407 (980)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCch
Confidence 0 12346888899998888887777666665544333211 11122223333332 1111
Q ss_pred -----hHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHHHHhCHHH--------H--
Q 009975 345 -----WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW---LQDKVYSIRDAAANNLKRLAEEFGPEW--------A-- 406 (521)
Q Consensus 345 -----~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~~~~--------~-- 406 (521)
..+|...--.... .....++.+...+...+-.. -+.++|..-+.|+..+-.+.+.+..+. .
T Consensus 408 eEa~f~e~RkkLk~fqdt-i~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~ 486 (980)
T KOG2021|consen 408 EEAFFEEVRKKLKNFQDT-IVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTS 486 (980)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHH
Confidence 2345543322222 23344454444444444333 345677777888888777776553221 1
Q ss_pred --HhhhHHHHHh--hhcCcchHHHHHHHHHHHHhhcccChH-HHhhcHHHHHHh--hcCCCCchHHHHHHHHHHHHHhhh
Q 009975 407 --MQHITPQVLE--MINNPHYLYRMTILRAISLLAPVMGSE-ITCSRLLPVVIN--ASKDRVPNIKFNVAKVLQSLIPIV 479 (521)
Q Consensus 407 --~~~l~~~l~~--~l~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~il~~l~~--~l~d~~~~VR~~a~~~l~~~~~~~ 479 (521)
...+.+.+.. ....++..+.....+.+.+-...+..+ ...+.++...+. ++.+.+..||.+|......+.+.+
T Consensus 487 ~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlL 566 (980)
T KOG2021|consen 487 QVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLL 566 (980)
T ss_pred HHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHH
Confidence 1123333332 345567777777777776654443322 122333333322 467779999999999999998876
Q ss_pred chH--HHHhhHHHHHHHhc
Q 009975 480 DQS--MVEKTIRPCLVELT 496 (521)
Q Consensus 480 ~~~--~~~~~~~~~l~~l~ 496 (521)
.++ .+.+.++..+..++
T Consensus 567 kkqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 567 KKQLVPFIEEILNKIQDLL 585 (980)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 654 23344555555444
No 197
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=95.95 E-value=0.93 Score=39.42 Aligned_cols=134 Identities=16% Similarity=0.180 Sum_probs=81.7
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCC-CChHHHHHH-HHHHHHHHHHhCCCccc
Q 009975 135 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMV-ANQLYELCEAVGPEPTR 212 (521)
Q Consensus 135 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vR~~~-~~~l~~i~~~~~~~~~~ 212 (521)
+....+...+..++....|..|+.++........ ...++.+...+.+ ++|.+--.. ...++.+....
T Consensus 50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------ 118 (213)
T PF08713_consen 50 EELYELADELWESGYREERYLALLILDKRRKKLT-----EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------ 118 (213)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------
T ss_pred hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------
Confidence 4555666667777777777777777765443322 1245555555554 566665555 33345443321
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccc
Q 009975 213 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 283 (521)
Q Consensus 213 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~ 283 (521)
+.+.+.+.+.+++++.-+|.+++..+...... ...+.++..+.....|++..||.+...++..++..
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 45677777778777777777776665444333 22345666666777778888888888887777644
No 198
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=95.94 E-value=0.87 Score=42.95 Aligned_cols=57 Identities=14% Similarity=0.057 Sum_probs=32.7
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHh
Q 009975 186 DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR 243 (521)
Q Consensus 186 d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 243 (521)
+.+.........++..-...+ .....+.++..+.+.++|..+.+|+.-+..++....
T Consensus 34 E~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 34 ESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred hcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 455555555555555554444 222345666666666666666666666666666554
No 199
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=95.92 E-value=1.2 Score=42.08 Aligned_cols=216 Identities=16% Similarity=0.068 Sum_probs=109.0
Q ss_pred HHHHHHHHHccccccChHHHHHhHHHHHHHhh-cCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHH
Q 009975 270 RSALASVIMGMAPLLGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVR 348 (521)
Q Consensus 270 r~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr 348 (521)
|...+..+..+.. .+ ....+...+..++ ++.++......+.++..-+..++. .+.+.++..+.+-++|+...+|
T Consensus 4 r~~~~~~L~~l~~-~~---~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~-~~~~~~~~~~~kGl~~kk~~vR 78 (339)
T PF12074_consen 4 RVLHASMLSSLPS-SS---LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSS-ELPKKVVDAFKKGLKDKKPPVR 78 (339)
T ss_pred HHHHHHHHHhCCC-cc---hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCc-CCCHHHHHHHHHHhcCCCCcHH
Confidence 3444444444443 11 2344455555544 356777777888888777666532 2336777888888888887788
Q ss_pred HHHHHHhHHHHh---hhChhhhHHHHHHHHHHHc----CCCcHHHH----HHHHHHHHHHHHHhCHHHH------H----
Q 009975 349 LAIIEYIPLLAS---QLGVGFFDDKLGALCMQWL----QDKVYSIR----DAAANNLKRLAEEFGPEWA------M---- 407 (521)
Q Consensus 349 ~~~~~~l~~l~~---~~~~~~~~~~l~~~l~~~l----~d~~~~vr----~~a~~~l~~l~~~~~~~~~------~---- 407 (521)
...+..++.... .-....+...+.|.+.+.+ ..+..... .++.-.+. +.. ...+.. .
T Consensus 79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~-~~~~~~~~~~~~~~~l~ 156 (339)
T PF12074_consen 79 RAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSS-WKLDKIDSKNISFWSLA 156 (339)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hcc-ccchhhhhhhhhhhhhc
Confidence 888887777765 1111223344555555444 33333322 11111111 000 000000 0
Q ss_pred ----hh--hHHHHHhhhcCcchHHHHHHHHHHHHhhcccChH---HHhhcHHHHHHhhcCCC--CchHHHHHHHHHHHHH
Q 009975 408 ----QH--ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDR--VPNIKFNVAKVLQSLI 476 (521)
Q Consensus 408 ----~~--l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~--~~~VR~~a~~~l~~~~ 476 (521)
.. +-+.+..-+ .....-...++++..+...+... .....+...++.++.++ .+.||..|..++..+.
T Consensus 157 ~~~kps~ll~~kvyskl--~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~ 234 (339)
T PF12074_consen 157 LDPKPSFLLSEKVYSKL--ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLY 234 (339)
T ss_pred cCCCcchhcCHHHHhcc--CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 00 011111111 11222334445555555433221 11234555666666666 8999999999999988
Q ss_pred hhhchHHHHhhHHHHHHHh
Q 009975 477 PIVDQSMVEKTIRPCLVEL 495 (521)
Q Consensus 477 ~~~~~~~~~~~~~~~l~~l 495 (521)
...+.. +...++..+.+.
T Consensus 235 ~~~~~~-l~~~li~~l~~~ 252 (339)
T PF12074_consen 235 ASNPEL-LSKSLISGLWKW 252 (339)
T ss_pred HhChHH-HHHHHHHHHHHH
Confidence 764432 445555555554
No 200
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.90 E-value=0.19 Score=41.48 Aligned_cols=87 Identities=17% Similarity=0.241 Sum_probs=63.8
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhhhHHHHHhccCCcHHHHHHHHHHHHcc---ccccC
Q 009975 212 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGM---APLLG 285 (521)
Q Consensus 212 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i---~~~~~ 285 (521)
...++|.+...+...+...|..|...+..+.+..+.+ .+.+++++.++..++..++.|...++.++..+ .+..|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 4678899999888888888888888888888873333 34567777788888889999999998888888 55566
Q ss_pred hHH--HHHhHHHHHH
Q 009975 286 KDA--TIEQLLPIFL 298 (521)
Q Consensus 286 ~~~--~~~~l~~~l~ 298 (521)
+.. +..+++|.+.
T Consensus 116 ~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 116 EALVPYYRQLLPVLN 130 (183)
T ss_pred HHHHHHHHHHHHHHH
Confidence 432 2334455444
No 201
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.83 E-value=0.25 Score=46.31 Aligned_cols=132 Identities=19% Similarity=0.263 Sum_probs=80.1
Q ss_pred HhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCC-------ChHHHHHHHHHhHHHHhh--hChhhhHH
Q 009975 299 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-------HWRVRLAIIEYIPLLASQ--LGVGFFDD 369 (521)
Q Consensus 299 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~vr~~~~~~l~~l~~~--~~~~~~~~ 369 (521)
..+.+++...|..|+..|..=.. ...++|.|..++.+. +...-...++....+..+ +.-+.+.-
T Consensus 185 ~a~~~~~~~~r~~aL~sL~tD~g-------l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh 257 (343)
T cd08050 185 EALVGSNEEKRREALQSLRTDPG-------LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLH 257 (343)
T ss_pred HHHhCCCHHHHHHHHHHhccCCC-------chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHH
Confidence 33444667777777766654222 155677766655332 344434444444444433 22345556
Q ss_pred HHHHHHHHHc----------CCCcHHHHHHHHHHHHHHHHHhCHH--HHHhhhHHHHHhhhcCcc--hHHHHHHHHHHHH
Q 009975 370 KLGALCMQWL----------QDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPH--YLYRMTILRAISL 435 (521)
Q Consensus 370 ~l~~~l~~~l----------~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~~~~--~~~r~~a~~~l~~ 435 (521)
.++|.+++++ .++.|.+|..|+..++.++..++.. .....++..+.+.+.|+. ......|+..+..
T Consensus 258 ~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~ 337 (343)
T cd08050 258 QLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSA 337 (343)
T ss_pred HHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHH
Confidence 6888888775 3567899999999999999888654 234556656666666543 4447777777776
Q ss_pred hh
Q 009975 436 LA 437 (521)
Q Consensus 436 l~ 437 (521)
++
T Consensus 338 lG 339 (343)
T cd08050 338 LG 339 (343)
T ss_pred hC
Confidence 64
No 202
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=95.75 E-value=0.81 Score=44.67 Aligned_cols=145 Identities=11% Similarity=-0.026 Sum_probs=101.5
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChH----HHh
Q 009975 371 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE----ITC 446 (521)
Q Consensus 371 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~----~~~ 446 (521)
....+.....|-++.+|.-+...++.++..+...+..-..+...-..+.|.+..+|......+..++.+.+.. .+.
T Consensus 276 cdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~ 355 (740)
T COG5537 276 CDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV 355 (740)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 3445567788999999999999999998877665555555666667888999999999999999998755432 355
Q ss_pred hcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 009975 447 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 518 (521)
Q Consensus 447 ~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~ 518 (521)
+.+...++..+.-...-||..+.+.+..+....-- ...-.-.+..+.-|-.++-|....+++.++++..
T Consensus 356 eRFk~rILE~~r~D~d~VRi~sik~l~~lr~lg~L---~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~ 424 (740)
T COG5537 356 ERFKDRILEFLRTDSDCVRICSIKSLCYLRILGVL---SSSEILIVSSCMLDIIPDSRENIVESVESICKID 424 (740)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccc---chhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence 67777777766555555999999999887653211 1122223344556666776666777777776654
No 203
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.73 E-value=2.1 Score=41.37 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=17.2
Q ss_pred HhHHHHHHHhhcCCChHHHHHHHHHHHHhhh
Q 009975 291 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 321 (521)
Q Consensus 291 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 321 (521)
..++-.++.++.++++.-|......+..+..
T Consensus 132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~ 162 (409)
T PF01603_consen 132 QKFIKKLLELFDSPDPRERDYLKTILHRIYG 162 (409)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3445555556666666666655555555443
No 204
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.73 E-value=2.8 Score=42.65 Aligned_cols=157 Identities=18% Similarity=0.125 Sum_probs=94.7
Q ss_pred hhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHHHHhc
Q 009975 27 TLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLC 106 (521)
Q Consensus 27 ~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 106 (521)
+.-++.=..-|+.|++.|..+++.+..+-...-+-|++.-+-.| +.+++..+..+..+..+.
T Consensus 30 RvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D------------------~~D~E~ik~~LdTl~il~ 91 (970)
T KOG0946|consen 30 RVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRD------------------YMDPEIIKYALDTLLILT 91 (970)
T ss_pred HHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhc------------------cCCHHHHHHHHHHHHHHH
Confidence 33444445559999999999999876554455566666544333 234444556666555544
Q ss_pred C-CCChHHHHHH--HHhHHH-HHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhh-----hhhhhH
Q 009975 107 Q-DDMPMVRRSA--ASNLGK-FAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD-----CVAHIL 177 (521)
Q Consensus 107 ~-~~~~~vr~~a--~~~l~~-l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-----~~~~l~ 177 (521)
. +++|.|-... ...+|. ++..+. ..+..+.++.......+.-||..+++.+..+...-+.+. ..+.-+
T Consensus 92 ~~dd~~~v~dds~qsdd~g~~iae~fi---k~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gI 168 (970)
T KOG0946|consen 92 SHDDSPEVMDDSTQSDDLGLWIAEQFI---KNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGI 168 (970)
T ss_pred hcCcchhhcccchhhhHHHHHHHHHHH---cCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhH
Confidence 3 3334433221 222332 222222 124456666777777788999999999999988877641 112234
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHH
Q 009975 178 PVIVNFSQDKSWRVRYMVANQLYELCE 204 (521)
Q Consensus 178 ~~l~~~~~d~~~~vR~~~~~~l~~i~~ 204 (521)
.-+..++.|....+|..+.-.+..+.+
T Consensus 169 S~lmdlL~DsrE~IRNe~iLlL~eL~k 195 (970)
T KOG0946|consen 169 SKLMDLLRDSREPIRNEAILLLSELVK 195 (970)
T ss_pred HHHHHHHhhhhhhhchhHHHHHHHHHc
Confidence 456667777777788888777776654
No 205
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=2.7 Score=42.47 Aligned_cols=422 Identities=10% Similarity=0.053 Sum_probs=211.4
Q ss_pred CchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCC-CCcch-hhhhhhhhhhc---C-----C----CChHHHH
Q 009975 31 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTAR-VSACGLFHIAY---P-----S----APDILKT 96 (521)
Q Consensus 31 ~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~-~~~~r-~~~~~~~~~~~---~-----~----~~~~~~~ 96 (521)
+.|+.+|..|...|..+-+.=+ .+...+.-.+.|+ ...+| .+++.+-..+. . + .++..++
T Consensus 14 dada~~rt~AE~~Lk~leKqPg------Fv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K~ 87 (970)
T COG5656 14 DADAGKRTIAEAMLKDLEKQPG------FVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAKK 87 (970)
T ss_pred ccCcchhhHHHHHHHHhhcCCc------HHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHHH
Confidence 5788999999988888766422 2222222223332 33334 34443322221 1 1 1233677
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcC--hh----
Q 009975 97 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE--PQ---- 170 (521)
Q Consensus 97 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~~---- 170 (521)
.++..+...+....-..|..-...+..+.+.--+...|. +.|....++.+++..+-..+.-++..+++... -.
T Consensus 88 ~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfkayRwk~ndeq~ 166 (970)
T COG5656 88 YLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKAYRWKYNDEQV 166 (970)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHHHhhhccchHh
Confidence 777777776655433444333333333433333345666 88999999999998888889999999887532 11
Q ss_pred ---hhhhhhHHHHHHhcC---C-CCh---HHHHHHHHHHHHHHHH-hCCCccc-cchHHH---HHHhcCC--------Ch
Q 009975 171 ---DCVAHILPVIVNFSQ---D-KSW---RVRYMVANQLYELCEA-VGPEPTR-MDLVPA---YVRLLRD--------NE 227 (521)
Q Consensus 171 ---~~~~~l~~~l~~~~~---d-~~~---~vR~~~~~~l~~i~~~-~~~~~~~-~~l~~~---l~~~l~d--------~~ 227 (521)
.....++|++.+.-. + .+. +.-+-..+.+...+.. ++..... ..+.+. ....++- -+
T Consensus 167 di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i~qkplp~evlsld 246 (970)
T COG5656 167 DILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQKPLPNEVLSLD 246 (970)
T ss_pred hHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHHHcCCCCHHHhccC
Confidence 122335666655332 1 222 2222222222222211 1111111 112221 1121110 12
Q ss_pred HH---------HHHHHHHhHHHHHhhhCHH-----------HHHHhhhHHHHHh-c-------cCCcHHHHHHHHHHHHc
Q 009975 228 AE---------VRIAAAGKVTKFCRILNPE-----------LAIQHILPCVKEL-S-------SDSSQHVRSALASVIMG 279 (521)
Q Consensus 228 ~~---------vr~~a~~~l~~l~~~~~~~-----------~~~~~~~~~l~~~-~-------~d~~~~vr~~~~~~l~~ 279 (521)
++ +++.|...+.++....+.. .+.. ++|.+.+. + +..=|.. -..+..+..
T Consensus 247 pevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t-~vp~il~tffkqie~wgqgqLWls-d~~LYfi~~ 324 (970)
T COG5656 247 PEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMT-RVPMILATFFKQIEEWGQGQLWLS-DIELYFIDF 324 (970)
T ss_pred hhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCeecc-hHHHHHHHH
Confidence 33 3567777777776655432 1111 33333211 1 1111111 111112222
Q ss_pred cccc----------cChHH---HHHhHHHHHHH------hh-cCCChHHHHH-------------HHHHHHHhhhhhchh
Q 009975 280 MAPL----------LGKDA---TIEQLLPIFLS------LL-KDEFPDVRLN-------------IISKLDQVNQVIGID 326 (521)
Q Consensus 280 i~~~----------~~~~~---~~~~l~~~l~~------~l-~d~~~~vr~~-------------a~~~l~~~~~~~~~~ 326 (521)
+... +++.. ....++|.+.. ++ .|++..+|+. |+..+-.....-+.+
T Consensus 325 Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~fl~~~~sKrke~ 404 (970)
T COG5656 325 FVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKEE 404 (970)
T ss_pred HHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHHHHHHhcccchh
Confidence 2111 11110 11223333211 11 1333344432 222222222222333
Q ss_pred hHhhhHHHHHHHHhc-----C---CChHHHHHHHHHhHHHHhhhChh-----hhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 009975 327 LLSQSLLPAIVELAE-----D---RHWRVRLAIIEYIPLLASQLGVG-----FFDDKLGALCMQWLQDKVYSIRDAAANN 393 (521)
Q Consensus 327 ~~~~~~~~~l~~~~~-----~---~~~~vr~~~~~~l~~l~~~~~~~-----~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 393 (521)
.+ +.+++.+...++ + .+.+-.+.++..+..+...+.+. .+...+++.+...++++.--.|..|++.
T Consensus 405 Tf-qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~ 483 (970)
T COG5656 405 TF-QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEF 483 (970)
T ss_pred hh-hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHH
Confidence 33 677888777651 2 23455566666666666543332 2334566777777889999999999999
Q ss_pred HHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh-HHHh---hcHHHHHHhhcCCCCc
Q 009975 394 LKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-EITC---SRLLPVVINASKDRVP 462 (521)
Q Consensus 394 l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-~~~~---~~il~~l~~~l~d~~~ 462 (521)
+..+...+....+..++.....+.+++.+..++..|+.++..+...... +.+. +..+..++.+-++=.-
T Consensus 484 is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~fei 556 (970)
T COG5656 484 ISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEI 556 (970)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccc
Confidence 9999777766656666777777888888899999999999988753321 2223 3344445555444333
No 206
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=95.69 E-value=1.8 Score=40.10 Aligned_cols=242 Identities=15% Similarity=0.132 Sum_probs=107.4
Q ss_pred HHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHh---------
Q 009975 270 RSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA--------- 340 (521)
Q Consensus 270 r~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~--------- 340 (521)
+.-+.+.++++.+.++.- ....+..-+.++.|.+-.||..|+..|+.+++. +.+ ..+.|.+.+++
T Consensus 41 k~lasq~ip~~fk~fp~l--a~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~-~rv~d~l~qLLnk~sl~~Lf 114 (460)
T KOG2213|consen 41 KRLASQFIPRFFKHFPSL--ADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DAL-SRVNDVLVQLLNKASLTGLF 114 (460)
T ss_pred HHHHHHHHHHHHhhCchh--hhHHHHhhhccccccchhhHHHHHhccchhccC---chh-hhhHHHHHHHHHHHHHHHHH
Confidence 344444555544444321 122344444555555555555555555555543 111 11222222211
Q ss_pred ---cCCChHHHHHHHHHhHHHHhhhChh----hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh---CHHHHHhhh
Q 009975 341 ---EDRHWRVRLAIIEYIPLLASQLGVG----FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF---GPEWAMQHI 410 (521)
Q Consensus 341 ---~~~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~l 410 (521)
+-.+..+|..++..+..=...++.+ ....+++..+...+.|-..+-=...+..|+.+-..- |.. -.+.+
T Consensus 115 ~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a-~lqeL 193 (460)
T KOG2213|consen 115 GQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEA-RLQEL 193 (460)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHH-HHHHH
Confidence 1124455555555544333233322 234455555666666644442222333333332111 111 12223
Q ss_pred HHHHHh---h--hcCcchHHHHHHHHHHHH----hhcccChHHHhhcHHHHHHhhcCCC-CchHHHHHHHHHHHHHhhhc
Q 009975 411 TPQVLE---M--INNPHYLYRMTILRAISL----LAPVMGSEITCSRLLPVVINASKDR-VPNIKFNVAKVLQSLIPIVD 480 (521)
Q Consensus 411 ~~~l~~---~--l~~~~~~~r~~a~~~l~~----l~~~~~~~~~~~~il~~l~~~l~d~-~~~VR~~a~~~l~~~~~~~~ 480 (521)
...... . ++-++...-...+.++.. ++.......|..++=..++..--|. ....+...+++|..|....
T Consensus 194 a~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~t- 272 (460)
T KOG2213|consen 194 AEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYT- 272 (460)
T ss_pred HHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccc-
Confidence 322221 1 222344443444444444 4443333333333222222222232 2356668888888888765
Q ss_pred hHHHHhhHHHHHHHh------cCCCCccHHHHHHHHHHHHHHhhc
Q 009975 481 QSMVEKTIRPCLVEL------TEDPDVDVRFFATQAIQSIDHVMM 519 (521)
Q Consensus 481 ~~~~~~~~~~~l~~l------~~D~~~~vr~~a~~al~~l~~~~~ 519 (521)
......+.+|.+.++ +.|.-++-.+.-.+++..+-+.++
T Consensus 273 taq~a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg 317 (460)
T KOG2213|consen 273 TAQAARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHHLG 317 (460)
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHh
Confidence 333335556655553 346666666777777766665544
No 207
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.68 E-value=0.1 Score=42.68 Aligned_cols=74 Identities=11% Similarity=0.233 Sum_probs=47.5
Q ss_pred HHHHhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhhcccCh--HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975 404 EWAMQHITPQVLEMINNPH-YLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 404 ~~~~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~ 477 (521)
+++....+..|...++|+. ...+..++.++..+.+..|. -.|.+.++|.++..++...+..|.....-|+.+..
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4455566777777777765 33444666666666654443 34667788888887776666777777666666553
No 208
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=95.67 E-value=0.44 Score=40.51 Aligned_cols=162 Identities=16% Similarity=0.165 Sum_probs=85.2
Q ss_pred HHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHH
Q 009975 349 LAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYR 426 (521)
Q Consensus 349 ~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r 426 (521)
..++..++.+...+|.. .+...++..+..+-.+++...|..+-.+++..+..+|++.+.+ ++|.-.+. .+....-|
T Consensus 18 ~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~-~lPLnl~~-~~~~~~~r 95 (198)
T PF08161_consen 18 PEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLS-ILPLNLDN-ADDSQPGR 95 (198)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHH-HCCCCccC-CCcCCccc
Confidence 34445555555555543 2223344444555566667888888888988888888875542 33321111 22222334
Q ss_pred HHHHHHHHHhhcccChHHHhhcHHHHHHhhcC------CCCchHHHHHHHHH-HHH---Hhhh--ch----HHHHhhHHH
Q 009975 427 MTILRAISLLAPVMGSEITCSRLLPVVINASK------DRVPNIKFNVAKVL-QSL---IPIV--DQ----SMVEKTIRP 490 (521)
Q Consensus 427 ~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~------d~~~~VR~~a~~~l-~~~---~~~~--~~----~~~~~~~~~ 490 (521)
...+-.+..-...-.-.+|.++++|..-.+-+ .....+.....+++ .++ .+.+ .+ +.| ..+-.
T Consensus 96 aWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F-~~~a~ 174 (198)
T PF08161_consen 96 AWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESF-PSFAK 174 (198)
T ss_pred chhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHH-HHHHH
Confidence 44444444444444456677788876544311 12222222222222 112 1111 11 223 55566
Q ss_pred HHHHhcCCCCccHHHHHHHHHHHH
Q 009975 491 CLVELTEDPDVDVRFFATQAIQSI 514 (521)
Q Consensus 491 ~l~~l~~D~~~~vr~~a~~al~~l 514 (521)
.|.+++.|. ++.|...+.++..|
T Consensus 175 ~L~~~L~~~-~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 175 LLGNALYDQ-PDLRPIICQALRRL 197 (198)
T ss_pred HHHHHHhcC-cchHHHHHHHHHHH
Confidence 666666664 79999999999876
No 209
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.66 E-value=0.34 Score=45.45 Aligned_cols=141 Identities=13% Similarity=0.172 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCC-------ChhHHHHHHHHHHHHhhh-
Q 009975 95 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-------QDSVRLLAVEGCAALGKL- 166 (521)
Q Consensus 95 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~-------~~~vr~~a~~~l~~l~~~- 166 (521)
....+..+.+.+.+.+...|..|...|.. +.-...++|.+.++..+. +...-...+++...+..+
T Consensus 176 lq~yf~~It~a~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~ 248 (343)
T cd08050 176 LQLYFEEITEALVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNP 248 (343)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCC
Confidence 44555666666666777788777766543 333455666666655433 222233334444444433
Q ss_pred -cChhhhhhhhHHHHHHhc----------CCCChHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCCh--HHHH
Q 009975 167 -LEPQDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNE--AEVR 231 (521)
Q Consensus 167 -~~~~~~~~~l~~~l~~~~----------~d~~~~vR~~~~~~l~~i~~~~~~~~~--~~~l~~~l~~~l~d~~--~~vr 231 (521)
+.-+.+...++|.+..++ .+..|.+|..++..++.+++.++.... .+.+...+.+.+.|+. ....
T Consensus 249 ~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~ 328 (343)
T cd08050 249 NLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTH 328 (343)
T ss_pred CCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchh
Confidence 222345556777766543 246688888888888888887775532 2344445555555543 2336
Q ss_pred HHHHHhHHHHH
Q 009975 232 IAAAGKVTKFC 242 (521)
Q Consensus 232 ~~a~~~l~~l~ 242 (521)
..|+..|..++
T Consensus 329 YGAi~GL~~lG 339 (343)
T cd08050 329 YGAIVGLSALG 339 (343)
T ss_pred hHHHHHHHHhC
Confidence 67777766654
No 210
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=95.56 E-value=2.6 Score=41.15 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccc---cchHHHHHHhcCCC
Q 009975 151 SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR---MDLVPAYVRLLRDN 226 (521)
Q Consensus 151 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~---~~l~~~l~~~l~d~ 226 (521)
..|..|.++|+.+...++.+......-+.+...+++++..=|..++-.+.+.+......... +.+.+.+...+.++
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 45888888888888888655444444456788888888888888888888888766543332 35556666666543
No 211
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.54 E-value=0.062 Score=43.90 Aligned_cols=130 Identities=17% Similarity=0.247 Sum_probs=85.7
Q ss_pred CchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChH-----HHHHHHHHHHHh
Q 009975 31 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQL 105 (521)
Q Consensus 31 ~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~l 105 (521)
...+++|..+.-.+..+. ....+...+.+-.++..+..+...+....++..+..+++..++- ..+.+++.+..+
T Consensus 16 ~~~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp TTSCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 456688999998988886 34455566788888888877655556677778888888776543 234456666666
Q ss_pred cC--CCChHHHHHHHHhHHHHHHhhC-chhhHHHHHHHHHHhhc-CCChh-HHHHHHHHHH
Q 009975 106 CQ--DDMPMVRRSAASNLGKFAATVE-PAHLKTDIMSIFEDLTQ-DDQDS-VRLLAVEGCA 161 (521)
Q Consensus 106 ~~--~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~l~~-d~~~~-vr~~a~~~l~ 161 (521)
+. .++..+...+++.+..-+..-. ...+.....+++.++.+ ++++. +|..|.-.|.
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 66 6677888888887776542211 13355667788888884 44555 6776665553
No 212
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.53 E-value=7.9 Score=46.58 Aligned_cols=153 Identities=15% Similarity=0.147 Sum_probs=103.7
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh----CHH------HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhc
Q 009975 369 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF----GPE------WAMQHITPQVLEMINNPHYLYRMTILRAISLLAP 438 (521)
Q Consensus 369 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~~~------~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~ 438 (521)
..+++.+...+...+..++.++..++..+.... |.. .+.+.+++.+....-++.|.-|...+..++.+..
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 457788888999999999999999988876543 321 2335677777888889999999999999999888
Q ss_pred ccChHH---HhhcHHHHHHhhcCCCCchHHH----HHHHHHHHHHhhh----ch----HHHHhhHHHHHHHhcCCCCccH
Q 009975 439 VMGSEI---TCSRLLPVVINASKDRVPNIKF----NVAKVLQSLIPIV----DQ----SMVEKTIRPCLVELTEDPDVDV 503 (521)
Q Consensus 439 ~~~~~~---~~~~il~~l~~~l~d~~~~VR~----~a~~~l~~~~~~~----~~----~~~~~~~~~~l~~l~~D~~~~v 503 (521)
.+.... +...++..++..+.|....+.. .+-..+..+.... .. ......+...+..-+.+++..|
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 766433 3455666777777777655554 2333333332221 11 1222333444444457778899
Q ss_pred HHHHHHHHHHHHHhhccC
Q 009975 504 RFFATQAIQSIDHVMMSS 521 (521)
Q Consensus 504 r~~a~~al~~l~~~~~~~ 521 (521)
|..+..++..+.+..+.|
T Consensus 1143 R~~~~~~L~~i~~~s~~~ 1160 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKS 1160 (3550)
T ss_pred HHHHHHHHHHHHHHcCCc
Confidence 999999999998887553
No 213
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.45 E-value=4.4 Score=43.16 Aligned_cols=129 Identities=17% Similarity=0.123 Sum_probs=89.9
Q ss_pred cCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC----HHHHHhhhHHHHHh
Q 009975 341 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG----PEWAMQHITPQVLE 416 (521)
Q Consensus 341 ~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~ 416 (521)
.|-.+.+|..+++.|+...+.++.-++.+..+..+-=.|.|.+..||..++++|..+...-. ...+.+..-..+.+
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVe 376 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVE 376 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 67889999999999999999988877666666665556889999999999999999886521 12233445555566
Q ss_pred hh-cCcchHHHHHHHHHHHHhhc--ccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHH
Q 009975 417 MI-NNPHYLYRMTILRAISLLAP--VMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 474 (521)
Q Consensus 417 ~l-~~~~~~~r~~a~~~l~~l~~--~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~ 474 (521)
+. .|-+..||...+..+..... .+..+. +..+..++-|.++.++.+|...+..
T Consensus 377 Madrd~~~~Vrav~L~~~~~~~~~g~L~d~d-----i~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 377 MADRDRNVSVRAVGLVLCLLLSSSGLLSDKD-----ILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHhhhcchhHHHHHHHHHHHHhcccccChhH-----HHHHHHHHhccCcchHHHHHHHHHH
Confidence 65 45566777766655554432 233322 3346677778888998888877644
No 214
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.44 E-value=0.51 Score=43.00 Aligned_cols=40 Identities=15% Similarity=0.261 Sum_probs=29.9
Q ss_pred chHHHHHHHHHHHHhhcccChHH--HhhcHHHHHHhhcCCCC
Q 009975 422 HYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRV 461 (521)
Q Consensus 422 ~~~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~ 461 (521)
..+++...+..+..+...+|... +.+.++|.+.+.+.++.
T Consensus 237 ~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 237 YPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENPF 278 (282)
T ss_pred chhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Confidence 57888888888888888777654 45778888887777653
No 215
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.27 E-value=2.9 Score=39.94 Aligned_cols=171 Identities=10% Similarity=0.040 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcC-CCChHHHHHHHHhHHHHHHhhCchh--hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhh
Q 009975 95 KTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAH--LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD 171 (521)
Q Consensus 95 ~~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~ 171 (521)
...++..+..... -++..+-......+..+....+..- ....-+|.+...+-+....+|..|..++..+...++++.
T Consensus 131 ~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~ 210 (372)
T PF12231_consen 131 VERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNK 210 (372)
T ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhH
Confidence 4445555555443 4456666777777777776665421 223344555555556667778877777766666665542
Q ss_pred hhhh-hHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHH
Q 009975 172 CVAH-ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA 250 (521)
Q Consensus 172 ~~~~-l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 250 (521)
.... +...+.....+. .+-...++-+..+...-+......++...+..++.+.. +..-..
T Consensus 211 ~~s~~~~~~~~~~~~~~--~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~-----------------~~~w~~ 271 (372)
T PF12231_consen 211 ELSKSVLEDLQRSLENG--KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSR-----------------LDSWEH 271 (372)
T ss_pred HHHHHHHHHhccccccc--cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCch-----------------hhccHh
Confidence 2222 222222222222 34444444455554433333333455555555554331 011122
Q ss_pred HHhhhHHHHHhccCCcHHHHHHHHHHHHcccccc
Q 009975 251 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 284 (521)
Q Consensus 251 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~ 284 (521)
.+..+......+++.++.+|..+..+...+....
T Consensus 272 ~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~ 305 (372)
T PF12231_consen 272 LNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYAS 305 (372)
T ss_pred HhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 3445555566677777778888777777766533
No 216
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.22 E-value=0.15 Score=41.75 Aligned_cols=147 Identities=13% Similarity=0.103 Sum_probs=88.0
Q ss_pred HHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhh-hcCcchHHHHHHHHHHHHhhcccChHHHh
Q 009975 369 DKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM-INNPHYLYRMTILRAISLLAPVMGSEITC 446 (521)
Q Consensus 369 ~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 446 (521)
+.+++.+.+.++. .++.+|..+++++|.+.. +.+..+. .+....... ..+.+...........+ .. ..+.+.+.
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~~~k-~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~ee~y~ 84 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGA-LDPYKHK-SIQKSLDSKSSENSNDESTDISLPMMG-IS-PSSEEYYP 84 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcHHHh-cccccCCccccccccccchhhHHhhcc-CC-CchHHHHH
Confidence 5678888887764 469999999999987753 2222111 000000000 01111111111111100 00 12345556
Q ss_pred hcHHHHHHhhcCCCCc-hHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975 447 SRLLPVVINASKDRVP-NIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 519 (521)
Q Consensus 447 ~~il~~l~~~l~d~~~-~VR~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~ 519 (521)
...+..+.+.++|+.- .-..+++.++-.+.+..|.. .+.+.++|.+.+.....+...|.....-+..|..+++
T Consensus 85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ivk 160 (160)
T PF11865_consen 85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIVK 160 (160)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Confidence 6778888999998743 34557788888887766654 4558899999988776666888888888888877653
No 217
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=1.3 Score=47.72 Aligned_cols=218 Identities=17% Similarity=0.179 Sum_probs=129.4
Q ss_pred HHhcCCCChHHHHHHHHhHHHHHHhhCchh--hHHHHHHHHHHhhcCC---ChhHHHHHHHHHHHHhhhcC---hhhhhh
Q 009975 103 TQLCQDDMPMVRRSAASNLGKFAATVEPAH--LKTDIMSIFEDLTQDD---QDSVRLLAVEGCAALGKLLE---PQDCVA 174 (521)
Q Consensus 103 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~l~~d~---~~~vr~~a~~~l~~l~~~~~---~~~~~~ 174 (521)
......+..+||....+++-.+.+..|+-. -|+.+.+++....... ...+-..+..++.-+..-+- +.++..
T Consensus 848 v~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~ 927 (1610)
T KOG1848|consen 848 VSDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL 927 (1610)
T ss_pred HHHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH
Confidence 345566667889888999999988777521 2666777766554432 33445555666666554322 234555
Q ss_pred hhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCC-----------------------------CccccchHHHHHHhcC
Q 009975 175 HILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP-----------------------------EPTRMDLVPAYVRLLR 224 (521)
Q Consensus 175 ~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~~-----------------------------~~~~~~l~~~l~~~l~ 224 (521)
.++..+..++. ..+..+-..+...+-.+.+.+.. +..+-.++..+.+++.
T Consensus 928 ~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ 1007 (1610)
T KOG1848|consen 928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCE 1007 (1610)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhc
Confidence 56666655543 34444555555544444332210 1112236667778889
Q ss_pred CChHHHHHHHHHhHHHHHhhhC----HHHHHHhhhHHHHHhcc------CCcHHH-------HHHHHHHHHccccccChH
Q 009975 225 DNEAEVRIAAAGKVTKFCRILN----PELAIQHILPCVKELSS------DSSQHV-------RSALASVIMGMAPLLGKD 287 (521)
Q Consensus 225 d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~~~l~~~~~------d~~~~v-------r~~~~~~l~~i~~~~~~~ 287 (521)
|+-.+||..|++++-++....| +..+..-++..+..++. -++|.- -...+-.++.+++.+...
T Consensus 1008 dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~ 1087 (1610)
T KOG1848|consen 1008 DSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSEN 1087 (1610)
T ss_pred cchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999999988877653 43333333333333332 011211 123445566666655432
Q ss_pred H-----------HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 009975 288 A-----------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 320 (521)
Q Consensus 288 ~-----------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 320 (521)
. ..+.++..+..+..+.++++..++..++..+.
T Consensus 1088 fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1088 FKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 2 24677888888888999999999999987764
No 218
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.09 E-value=3.2 Score=39.44 Aligned_cols=149 Identities=15% Similarity=0.091 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh-hhhhh-hhHHHHH-HhcCC-CChHHHHHHHHHHHHHHHHh-C
Q 009975 133 LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVA-HILPVIV-NFSQD-KSWRVRYMVANQLYELCEAV-G 207 (521)
Q Consensus 133 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~-~l~~~l~-~~~~d-~~~~vR~~~~~~l~~i~~~~-~ 207 (521)
.+..+.+-+..++-+++..||.++.+++..+...... ....+ ++--++. .+..| ++..-|.+|.+.+..+...- +
T Consensus 22 ~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~ 101 (371)
T PF14664_consen 22 VLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG 101 (371)
T ss_pred hHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC
Confidence 3444455555433344489999999999887654321 11111 1111222 23333 45667899999998888763 2
Q ss_pred CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccc
Q 009975 208 PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMA 281 (521)
Q Consensus 208 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~ 281 (521)
....+..++..++...+++++..|..|++++.+++-.-+.-...-.-+..+.+.+.|....+-..++.++-.+.
T Consensus 102 ~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL 175 (371)
T PF14664_consen 102 PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLL 175 (371)
T ss_pred cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh
Confidence 34445678888888899999999999999998887643322222222344444444444334444444444443
No 219
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.03 E-value=2.5 Score=37.91 Aligned_cols=101 Identities=16% Similarity=0.177 Sum_probs=65.4
Q ss_pred HHHHhcCCCChHHHHHHHHhHHHHHHhhCch---hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcC-hhhhhhhh
Q 009975 101 IYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE-PQDCVAHI 176 (521)
Q Consensus 101 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l 176 (521)
.+..++.+.+|.||+.|+..+..+... +.. ......++.+.++..+..+ ...|+.++.+++..-. .+...+.+
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~ 83 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDL 83 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456778889999999999888777655 221 2345678888888888777 4456677777765421 12223335
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 009975 177 LPVIVNFSQDKSWRVRYMVANQLYELCE 204 (521)
Q Consensus 177 ~~~l~~~~~d~~~~vR~~~~~~l~~i~~ 204 (521)
+..+...+.|+.+..-...+..+.++++
T Consensus 84 ~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 84 LKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 5666666677755555666666666654
No 220
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.98 E-value=2.6 Score=37.82 Aligned_cols=59 Identities=24% Similarity=0.328 Sum_probs=43.3
Q ss_pred CCCCchHHHHHHHHHHHHHhh-hchHHHH-hhHHHHHHHh-cCCCCccHHHHHHHHHHHHHH
Q 009975 458 KDRVPNIKFNVAKVLQSLIPI-VDQSMVE-KTIRPCLVEL-TEDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 458 ~d~~~~VR~~a~~~l~~~~~~-~~~~~~~-~~~~~~l~~l-~~D~~~~vr~~a~~al~~l~~ 516 (521)
.++++.||...++++-.++.. -|.+.+. ..+.|++..+ ...+++++|.......+-+..
T Consensus 254 RepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 254 REPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred CCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 467999999999999888753 4555554 4577777776 355889998887777766554
No 221
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.93 E-value=3.2 Score=38.66 Aligned_cols=205 Identities=13% Similarity=0.141 Sum_probs=125.8
Q ss_pred HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhh-chh------hH---hhhHHHHHHHHhcCCChHHHHHHHHHhHHH
Q 009975 289 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GID------LL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLL 358 (521)
Q Consensus 289 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~------~~---~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l 358 (521)
..+++++.+...+..-+.+.|+.+...+..+...- |.. .+ .+.++..+....++++-.. ..+.+
T Consensus 73 ~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial------~~g~m 146 (335)
T PF08569_consen 73 YRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL------NCGDM 146 (335)
T ss_dssp HHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH------HHHHH
T ss_pred HHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc------hHHHH
Confidence 35678888888888888999999888888776532 111 11 1334444444444433211 11222
Q ss_pred HhhhC-hhhhHHH-----HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh---CHHHH---HhhhHHHHHhhhcCcchHHH
Q 009975 359 ASQLG-VGFFDDK-----LGALCMQWLQDKVYSIRDAAANNLKRLAEEF---GPEWA---MQHITPQVLEMINNPHYLYR 426 (521)
Q Consensus 359 ~~~~~-~~~~~~~-----l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~---~~~l~~~l~~~l~~~~~~~r 426 (521)
...+- .+.+... ..--+..+.+.++.+|-..|...+..+.... ..+++ -+.++..+..++.++||-.|
T Consensus 147 lRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 147 LRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 22211 1111111 1223567788899999988888888876432 22222 24566777888999999999
Q ss_pred HHHHHHHHHhhcccCh-H----HH-hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch-HH-------HHhhHHHHH
Q 009975 427 MTILRAISLLAPVMGS-E----IT-CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-SM-------VEKTIRPCL 492 (521)
Q Consensus 427 ~~a~~~l~~l~~~~~~-~----~~-~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~-~~-------~~~~~~~~l 492 (521)
..++..+|.+...=.. . ++ .+..+..++.+|+|+..+||..|..++..++..-.. +. ..+.++..+
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl 306 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFL 306 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHH
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHH
Confidence 9999999999842111 1 11 256788899999999999999999999998764321 11 236778888
Q ss_pred HHhcCCC
Q 009975 493 VELTEDP 499 (521)
Q Consensus 493 ~~l~~D~ 499 (521)
.++..|+
T Consensus 307 ~~f~~~~ 313 (335)
T PF08569_consen 307 KDFHTDR 313 (335)
T ss_dssp HTTTTT-
T ss_pred HhCCCCC
Confidence 8887777
No 222
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=94.89 E-value=0.61 Score=40.55 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=89.2
Q ss_pred HhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHHHHhcCC-CChHHHHHH-HHhHHHHHHhhCchhhHH
Q 009975 58 DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQD-DMPMVRRSA-ASNLGKFAATVEPAHLKT 135 (521)
Q Consensus 58 ~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~~vr~~a-~~~l~~l~~~~~~~~~~~ 135 (521)
+....+..++.+++..+.|..++.++....+..++ ..++.+...+.+ ++|.+-... ...++.+.... +
T Consensus 50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~----~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~ 119 (213)
T PF08713_consen 50 EELYELADELWESGYREERYLALLILDKRRKKLTE----EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------P 119 (213)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--H----HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------G
T ss_pred hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhH----HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------H
Confidence 44555666666777777777777666554433322 255566665544 467666655 33344443321 5
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccch
Q 009975 136 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDL 215 (521)
Q Consensus 136 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l 215 (521)
...+.+.....+++.-+|..++.++...... .....++..+.....|++..||.++.-+|..++.. .++.+
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~-----~~~~v 190 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK-----DPDEV 190 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT------HHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh-----CHHHH
Confidence 6778888888888888888887666444433 34456777777788888888888888877766432 12344
Q ss_pred HHHHHH
Q 009975 216 VPAYVR 221 (521)
Q Consensus 216 ~~~l~~ 221 (521)
.+.+.+
T Consensus 191 ~~~l~~ 196 (213)
T PF08713_consen 191 LEFLQK 196 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 223
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.86 E-value=3.1 Score=38.15 Aligned_cols=179 Identities=17% Similarity=0.150 Sum_probs=126.2
Q ss_pred HHHHHHHhhcCC-ChHHHHHHHHHHHHhhhhhchhhHhhh---HHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhH
Q 009975 293 LLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQS---LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD 368 (521)
Q Consensus 293 l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~ 368 (521)
+-..+.++++-. -..|-..|++....+.+.+|++.+.+. ..|.+..++...+-.||-..+..+....-.+|. ...
T Consensus 55 v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~ 133 (307)
T PF04118_consen 55 VSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALR 133 (307)
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHH
Confidence 344445555433 257999999999999999998776432 355666666777778999998888887767777 444
Q ss_pred HHHHH---HHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccC----
Q 009975 369 DKLGA---LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---- 441 (521)
Q Consensus 369 ~~l~~---~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~---- 441 (521)
+.+-+ .++..+.|++.++...+...+..+...+|.+.+-+.+.-.+. .++..|..|+..+..-.....
T Consensus 134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~ 208 (307)
T PF04118_consen 134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDEL 208 (307)
T ss_pred HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCccccccc
Confidence 44444 444557889999999999999999999987755444433333 456788888888887766444
Q ss_pred --h-H---HH----hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975 442 --S-E---IT----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 442 --~-~---~~----~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~ 477 (521)
. + .+ ..-++..+...+.|++--|++.++..|-.-.+
T Consensus 209 ~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P 254 (307)
T PF04118_consen 209 SLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFP 254 (307)
T ss_pred ccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence 1 0 01 13466788889999999999999888865443
No 224
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.86 E-value=2 Score=41.73 Aligned_cols=134 Identities=15% Similarity=0.214 Sum_probs=84.5
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCC--------ChHHHHHHHHHhHHHHhh--hChhhh
Q 009975 298 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR--------HWRVRLAIIEYIPLLASQ--LGVGFF 367 (521)
Q Consensus 298 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~vr~~~~~~l~~l~~~--~~~~~~ 367 (521)
.+.+.+.++..|..|+++|..=.. . ..++|.|..++.+. +-..-..++.....+.++ +--+.|
T Consensus 213 t~a~~g~~~~~r~eAL~sL~TDsG---L----~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepY 285 (576)
T KOG2549|consen 213 TEACTGSDEPLRQEALQSLETDSG---L----QQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPY 285 (576)
T ss_pred HHHHhcCCHHHHHHHHHhhccCcc---H----HHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhH
Confidence 334445777888888877765322 1 55677777665432 111222222222222222 112445
Q ss_pred HHHHHHHHHHHc----------CCCcHHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCc--chHHHHHHHHHH
Q 009975 368 DDKLGALCMQWL----------QDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP--HYLYRMTILRAI 433 (521)
Q Consensus 368 ~~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~~~--~~~~r~~a~~~l 433 (521)
...++|.++.++ .|+.|.+|..|+..+..++..++... ....++..+.+.+.|. .+.....++..+
T Consensus 286 lh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL 365 (576)
T KOG2549|consen 286 LHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGL 365 (576)
T ss_pred HHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHH
Confidence 667888887764 27889999999999999999887643 3456667777776664 578888888888
Q ss_pred HHhhc
Q 009975 434 SLLAP 438 (521)
Q Consensus 434 ~~l~~ 438 (521)
..+..
T Consensus 366 ~~lg~ 370 (576)
T KOG2549|consen 366 SELGH 370 (576)
T ss_pred HHhhh
Confidence 77764
No 225
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=94.77 E-value=5 Score=40.13 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=44.7
Q ss_pred HHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhh
Q 009975 113 VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH 175 (521)
Q Consensus 113 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 175 (521)
+-...+..|.+++...++ ..++++-..+.+-.-.++.-....+.+++.-++.+-..+.+..+
T Consensus 244 lY~~vl~~Lctfi~~~~~-s~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~h 305 (559)
T PF14868_consen 244 LYQHVLVHLCTFIASLSP-SAFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHH 305 (559)
T ss_pred HHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 456777788887766554 37777777776666668888899999999999976555544444
No 226
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=94.73 E-value=4.4 Score=39.25 Aligned_cols=95 Identities=17% Similarity=0.247 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhCHHHH---HhhhHHHHHhhhcCcchHHHHHHHHHHHHh--hccc--ChHHHhhcHHHHHHhh-cCCC
Q 009975 389 AAANNLKRLAEEFGPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLL--APVM--GSEITCSRLLPVVINA-SKDR 460 (521)
Q Consensus 389 ~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l--~~~~--~~~~~~~~il~~l~~~-l~d~ 460 (521)
..+.-+..+...+..+.+ ...++..+...+++++.+|-+.|+..+..= ...+ ....+.+.+.|.+.+. -++.
T Consensus 274 ~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HW 353 (409)
T PF01603_consen 274 LFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHW 353 (409)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-S
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHh
Confidence 344555555555554433 355677777788999999998888665432 1111 1122334444444442 3456
Q ss_pred CchHHHHHHHHHHHHHhhhchHHH
Q 009975 461 VPNIKFNVAKVLQSLIPIVDQSMV 484 (521)
Q Consensus 461 ~~~VR~~a~~~l~~~~~~~~~~~~ 484 (521)
+..||..|.+++..+... +++.+
T Consensus 354 n~~Vr~~a~~vl~~l~~~-d~~lf 376 (409)
T PF01603_consen 354 NQTVRNLAQNVLKILMEM-DPKLF 376 (409)
T ss_dssp STTHHHHHHHHHHHHHTT-SHHHH
T ss_pred hHHHHHHHHHHHHHHHHh-CHHHH
Confidence 888999999999888763 44433
No 227
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=94.59 E-value=4.9 Score=39.24 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=58.0
Q ss_pred hHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhh---hhhHHHHHHhcCC
Q 009975 111 PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV---AHILPVIVNFSQD 186 (521)
Q Consensus 111 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~~~d 186 (521)
...|-.++++||.++..++.+......-+.+...+++....-|..|.-++...+......... +.+.+.+...+++
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~ 179 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILEN 179 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcC
Confidence 567899999999999999776665666667888888888888999999999988876543222 3566666666663
No 228
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.58 E-value=1.7 Score=35.90 Aligned_cols=112 Identities=18% Similarity=0.145 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHH---hhhHHHHHhhhcCc-chHHHHHHHHHHHHhhcccCh-
Q 009975 368 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM---QHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGS- 442 (521)
Q Consensus 368 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~- 442 (521)
.+++..-+.++++++++.-|..++..++.++...+.+.+. ...+..+...++.+ ...++..++.++..+....+.
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3455556677777877888888877777777766554432 33444555555543 356777888888887764332
Q ss_pred -----HH---HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch
Q 009975 443 -----EI---TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 481 (521)
Q Consensus 443 -----~~---~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~ 481 (521)
+. ..+.+++.+++++++ ..+...++.+|..+...++.
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 11 124556666776766 56777888888888876543
No 229
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=94.32 E-value=5.6 Score=38.73 Aligned_cols=192 Identities=12% Similarity=0.155 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHhcCCC-ChHHHHHHHHhHHHHHHhhCc---h---hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhh
Q 009975 94 LKTELRSIYTQLCQDD-MPMVRRSAASNLGKFAATVEP---A---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL 166 (521)
Q Consensus 94 ~~~~l~~~l~~l~~~~-~~~vr~~a~~~l~~l~~~~~~---~---~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 166 (521)
..+.+...+...++.+ +|.--+...++++.+++...+ + .+++.+.|.+...++.+-.+.--++.++++.+.+.
T Consensus 68 il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~ 147 (435)
T PF03378_consen 68 ILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLEL 147 (435)
T ss_dssp HHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556677777777665 789999999999999887553 2 47888999999988877655566778888888877
Q ss_pred cChh---hhhhhhHHHHH-HhcCCCChHHHHHHHHHHHHHHHHhCCC----ccccchHHHHHHhcCCChHHHHHHHHHhH
Q 009975 167 LEPQ---DCVAHILPVIV-NFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMDLVPAYVRLLRDNEAEVRIAAAGKV 238 (521)
Q Consensus 167 ~~~~---~~~~~l~~~l~-~~~~d~~~~vR~~~~~~l~~i~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 238 (521)
-+.+ .....++|.+. ...-+....+ -+.++.+..+.+.-+.. .....++.++.+++.....+ ..+...|
T Consensus 148 ~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL 224 (435)
T PF03378_consen 148 RPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLL 224 (435)
T ss_dssp SS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHH
Confidence 6522 12233444433 2222222222 33444555554433322 22356788888888765322 4578889
Q ss_pred HHHHhhhCHHHH---HHhhhHHHHHhc-cCCcHHHHHHHHHHHHccccccChHH
Q 009975 239 TKFCRILNPELA---IQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLGKDA 288 (521)
Q Consensus 239 ~~l~~~~~~~~~---~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~i~~~~~~~~ 288 (521)
..+..+++.+.+ .+.++..+.+.+ +.+.++.+...+..++.++-..|.+.
T Consensus 225 ~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~ 278 (435)
T PF03378_consen 225 ESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDF 278 (435)
T ss_dssp HHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHH
Confidence 999999888643 333444433333 45666666666666666555455443
No 230
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=94.30 E-value=1 Score=36.33 Aligned_cols=141 Identities=20% Similarity=0.208 Sum_probs=85.4
Q ss_pred hHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhc-CCCCh
Q 009975 111 PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS-QDKSW 189 (521)
Q Consensus 111 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~d~~~ 189 (521)
+.||...+.++..++...-+ ..|+.+++.+.++.+. ++........+|..+.+.+.+ .. .+.+.
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P-~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~-------------~~~~~~~~ 66 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWP-QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITD-------------FRRSSLSQ 66 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT-------------SHCCHSHH
T ss_pred hhHHHHHHHHHHHHHHHHCh-hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh-------------hhchhhhH
Confidence 46888889999998876542 3467777777777766 355566677777766654321 00 11222
Q ss_pred HHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC----hHHHHHHHHHhHHHHHhhhCHHHHHH-hhhHHHHHhccC
Q 009975 190 RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN----EAEVRIAAAGKVTKFCRILNPELAIQ-HILPCVKELSSD 264 (521)
Q Consensus 190 ~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~----~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~~l~~~~~d 264 (521)
..|...-+.+..-. +.++..+.+.+... ..++...+++++.......+.+.+.+ .+++.+.+++.+
T Consensus 67 ~r~~~l~~~l~~~~---------~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~ 137 (148)
T PF08389_consen 67 ERRRELKDALRSNS---------PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQS 137 (148)
T ss_dssp HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCC
Confidence 33444444443322 34455555554332 27788888999988888777765554 477777777755
Q ss_pred CcHHHHHHHHHHH
Q 009975 265 SSQHVRSALASVI 277 (521)
Q Consensus 265 ~~~~vr~~~~~~l 277 (521)
++ .+..|++++
T Consensus 138 ~~--~~~~A~~cl 148 (148)
T PF08389_consen 138 PE--LREAAAECL 148 (148)
T ss_dssp CC--CHHHHHHHH
T ss_pred HH--HHHHHHHhC
Confidence 54 366666654
No 231
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.28 E-value=4.6 Score=37.59 Aligned_cols=74 Identities=7% Similarity=0.024 Sum_probs=53.2
Q ss_pred hhHHHHHHHHhcC---CChHHHHHHHHHhHHHHhhhChhh------hHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 009975 330 QSLLPAIVELAED---RHWRVRLAIIEYIPLLASQLGVGF------FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 400 (521)
Q Consensus 330 ~~~~~~l~~~~~~---~~~~vr~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 400 (521)
+.++.....++.+ ..|.+|....+.+..+.+.+.... ....++..+.-.+++++.+|...++.++..+.+.
T Consensus 116 ~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~ 195 (319)
T PF08767_consen 116 EAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNN 195 (319)
T ss_dssp HHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 4444444455533 458999999999998888764322 1234667777788999999999999999999876
Q ss_pred hCH
Q 009975 401 FGP 403 (521)
Q Consensus 401 ~~~ 403 (521)
...
T Consensus 196 ~~~ 198 (319)
T PF08767_consen 196 VSK 198 (319)
T ss_dssp HHH
T ss_pred HHh
Confidence 644
No 232
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=94.13 E-value=4.6 Score=38.38 Aligned_cols=143 Identities=20% Similarity=0.165 Sum_probs=92.8
Q ss_pred hHHhhhhcCc--hhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcC-CCCcchhhhhhhhhhhcCCCChHHHHHH-
Q 009975 23 PPLETLCTVE--ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG-EWFTARVSACGLFHIAYPSAPDILKTEL- 98 (521)
Q Consensus 23 ~~l~~l~~~~--~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~l- 98 (521)
..|.++...+ ...||-.+.+.|..+...-.-+.+...=+-.|..+.+. +..+...+..+++++++++..+. ...+
T Consensus 183 D~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet-~~~Lv 261 (832)
T KOG3678|consen 183 DLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEET-CQRLV 261 (832)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHH-HHHHH
Confidence 3344444433 34779999998888776655555554445555555543 23344455678888988876544 3333
Q ss_pred ----HHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch----hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhh
Q 009975 99 ----RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL 166 (521)
Q Consensus 99 ----~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 166 (521)
+..+.-.+.-.+|.+-+.++-+|++++-+-+.. .+...+-.++..+..+.++-.|..|+-+...++..
T Consensus 262 aa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 262 AAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN 337 (832)
T ss_pred hhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence 334444456667888888888999887654432 34556667777777778888899998888888765
No 233
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.06 E-value=1.2 Score=41.48 Aligned_cols=109 Identities=21% Similarity=0.233 Sum_probs=84.3
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHhCHH--HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH---HhhcHH
Q 009975 376 MQWLQDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---TCSRLL 450 (521)
Q Consensus 376 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~---~~~~il 450 (521)
+.-++..+..||..|...+..+....... .....+++.+..+..|.+..+|.+...++..++.....+. +..-++
T Consensus 64 l~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~ 143 (393)
T KOG2149|consen 64 LSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLM 143 (393)
T ss_pred HhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHH
Confidence 34567788899999988888877653221 1235577788888899999999999999988776555544 345678
Q ss_pred HHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHH
Q 009975 451 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV 484 (521)
Q Consensus 451 ~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~ 484 (521)
+++...+..-.+.||.-++..+..+...+++...
T Consensus 144 ~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~ 177 (393)
T KOG2149|consen 144 PYISSAMTHITPEIQEDSLKFLSLLLERYPDTFS 177 (393)
T ss_pred HHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHH
Confidence 8889999999999999999999999988876543
No 234
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.03 E-value=5.1 Score=37.25 Aligned_cols=155 Identities=14% Similarity=0.155 Sum_probs=93.2
Q ss_pred HHHHHHHHHhHHHHhhhCh-hhhHHHHHHHHHH-Hc---CCCcHHHHHH-HHHHHHHHHHHhCHH------HHHhhhHHH
Q 009975 346 RVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQ-WL---QDKVYSIRDA-AANNLKRLAEEFGPE------WAMQHITPQ 413 (521)
Q Consensus 346 ~vr~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~-~l---~d~~~~vr~~-a~~~l~~l~~~~~~~------~~~~~l~~~ 413 (521)
.+|..+++.+..+...... +.....++|.+.. .+ ++..+..|.. ++.+++.++..++.. .+.+.++..
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4566677777777666553 2223333333322 33 3355555553 455666666666542 223444444
Q ss_pred HHhhhcC---cchHHHHHHHHHHHHhhcccChHH------HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch---
Q 009975 414 VLEMINN---PHYLYRMTILRAISLLAPVMGSEI------TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--- 481 (521)
Q Consensus 414 l~~~l~~---~~~~~r~~a~~~l~~l~~~~~~~~------~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~--- 481 (521)
..++.++ .-+..|......+..+...+-... ....++..+.-+++++..+|...+++++..+......
T Consensus 122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~ 201 (319)
T PF08767_consen 122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNP 201 (319)
T ss_dssp HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SH
T ss_pred HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCH
Confidence 4555543 237899999999988887543322 2346778888889999999999999999999877655
Q ss_pred ----HHHHhhHHHHHHH---hcCCCC
Q 009975 482 ----SMVEKTIRPCLVE---LTEDPD 500 (521)
Q Consensus 482 ----~~~~~~~~~~l~~---l~~D~~ 500 (521)
..+..+.++.+.. .+.|++
T Consensus 202 ~~~~~F~~~y~~~il~~if~vltD~~ 227 (319)
T PF08767_consen 202 EFANQFYQQYYLDILQDIFSVLTDSD 227 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 3444555555554 345554
No 235
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.01 E-value=3.1 Score=40.50 Aligned_cols=142 Identities=13% Similarity=0.191 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCC--------hhHHHHHHHHHHHHhhh
Q 009975 95 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ--------DSVRLLAVEGCAALGKL 166 (521)
Q Consensus 95 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~--------~~vr~~a~~~l~~l~~~ 166 (521)
....+.-+.+.+...++..|+.|+..|.+ +.-.+.++|.+..++.+.- -..-....+....+..+
T Consensus 205 lQlYy~~It~a~~g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N 277 (576)
T KOG2549|consen 205 LQLYYKEITEACTGSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN 277 (576)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC
Confidence 34456667777777889999999887754 3335566777776665431 12222233333334333
Q ss_pred --cChhhhhhhhHHHHHHhc----------CCCChHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCC--hHHH
Q 009975 167 --LEPQDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDN--EAEV 230 (521)
Q Consensus 167 --~~~~~~~~~l~~~l~~~~----------~d~~~~vR~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~--~~~v 230 (521)
+--+.+..+++|.+..++ .|..|.+|..++..+..+++.++... ....++..+.+.+.|+ .+..
T Consensus 278 p~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st 357 (576)
T KOG2549|consen 278 PNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLST 357 (576)
T ss_pred CccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchh
Confidence 111346667778776643 36789999999999999998887532 2356777777777776 3677
Q ss_pred HHHHHHhHHHHHh
Q 009975 231 RIAAAGKVTKFCR 243 (521)
Q Consensus 231 r~~a~~~l~~l~~ 243 (521)
...++..|..++.
T Consensus 358 ~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 358 HYGAIAGLSELGH 370 (576)
T ss_pred hhhHHHHHHHhhh
Confidence 8888888887766
No 236
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.86 E-value=0.7 Score=36.97 Aligned_cols=75 Identities=11% Similarity=0.140 Sum_probs=59.8
Q ss_pred HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH----hhcHHHHHHhhcCC-CCchHHHHHHHHHHHHHhhhch
Q 009975 407 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQ 481 (521)
Q Consensus 407 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d-~~~~VR~~a~~~l~~~~~~~~~ 481 (521)
....+..|...++++|+++...|+..+..+.+.+|..+. ...++..+.+++.+ .++.||...+..+......+..
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 345666777778888888888899999998888887553 35788888888888 7888999999999888877754
No 237
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=93.86 E-value=0.3 Score=35.56 Aligned_cols=68 Identities=25% Similarity=0.366 Sum_probs=46.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCHH--HHHhhhHHHHHhhhcCc--chHHHHHHHHHHHHhhcccChHHHhhcHHHH
Q 009975 381 DKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLPV 452 (521)
Q Consensus 381 d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~ 452 (521)
|++|.+|..|++.++.++..++.. .....+...+.+.+.|+ +...+..|+..+..+ |.+.+...++|.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~ 88 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPN 88 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccC
Confidence 567888888888888888887743 34566777777777654 466777787777776 444444445543
No 238
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=93.84 E-value=0.41 Score=39.11 Aligned_cols=132 Identities=16% Similarity=0.195 Sum_probs=81.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhccc---ChHHH-hhcHHHHHHhh
Q 009975 381 DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM---GSEIT-CSRLLPVVINA 456 (521)
Q Consensus 381 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~---~~~~~-~~~il~~l~~~ 456 (521)
...+++|..+.-++..+.+..+.+ +.+.+-..+...+.+....-...++.++..+.+.. +...| .+.+++.+...
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 356678888888887776444333 44555556666666655556677777777777632 22222 35677777777
Q ss_pred cC--CCCchHHHHHHHHHHHHHhhhc-hHHHHhhHHHHHHHhcC-CCCcc-HHHHHHHHHHH
Q 009975 457 SK--DRVPNIKFNVAKVLQSLIPIVD-QSMVEKTIRPCLVELTE-DPDVD-VRFFATQAIQS 513 (521)
Q Consensus 457 l~--d~~~~VR~~a~~~l~~~~~~~~-~~~~~~~~~~~l~~l~~-D~~~~-vr~~a~~al~~ 513 (521)
.. ..+..+...+++++..-+..-. ...+.++..+.|.++.+ +++.. +|..|+-++-+
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 76 6677778888888876654322 23345777788888763 44444 67777666543
No 239
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=93.75 E-value=5.3 Score=36.45 Aligned_cols=133 Identities=17% Similarity=0.235 Sum_probs=90.2
Q ss_pred HHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhh---H-----hhhHHHHHHHHhc--------CCChHHHHHHHH
Q 009975 290 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL---L-----SQSLLPAIVELAE--------DRHWRVRLAIIE 353 (521)
Q Consensus 290 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~-----~~~~~~~l~~~~~--------~~~~~vr~~~~~ 353 (521)
..-++|.++.++.|.++++|..++..+..+........ + .+.+.+.+...+. +++..+-..+..
T Consensus 117 ~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~ 196 (282)
T PF10521_consen 117 WPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYP 196 (282)
T ss_pred hhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHH
Confidence 45689999999999999999999999999987665443 2 1233333333332 566667677777
Q ss_pred HhHHHHhhhC---h----hhhHHHHHHHHHHHcC-C---CcHHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcC
Q 009975 354 YIPLLASQLG---V----GFFDDKLGALCMQWLQ-D---KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINN 420 (521)
Q Consensus 354 ~l~~l~~~~~---~----~~~~~~l~~~l~~~l~-d---~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~~ 420 (521)
++-.+++... . ..+.+.+...++..+. - +.+.++...++.+..++..+|... +.+.++|.+.+.+.+
T Consensus 197 ~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~n 276 (282)
T PF10521_consen 197 ALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILEN 276 (282)
T ss_pred HHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Confidence 7777766431 1 1222333343333322 2 358999999999999999998764 357889988888877
Q ss_pred cc
Q 009975 421 PH 422 (521)
Q Consensus 421 ~~ 422 (521)
+.
T Consensus 277 pf 278 (282)
T PF10521_consen 277 PF 278 (282)
T ss_pred CC
Confidence 64
No 240
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=93.67 E-value=9.2 Score=38.97 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=54.2
Q ss_pred HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhh
Q 009975 250 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 321 (521)
Q Consensus 250 ~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 321 (521)
+...++..+..+..|+=..|+..++..+..+...-+++ ...++-.+++-+.|++..+-..|...|..+..
T Consensus 301 ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq--E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~ 370 (988)
T KOG2038|consen 301 LYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ--ENNLLVLLVNKLGDPQNKIASKASYLLEGLLA 370 (988)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH--HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHh
Confidence 34567788888888998899998888888776555544 35688888899999998888888888877654
No 241
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.54 E-value=8 Score=37.86 Aligned_cols=387 Identities=14% Similarity=0.135 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhh
Q 009975 94 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 173 (521)
Q Consensus 94 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 173 (521)
.++.++..+..+....+ .+|.+.+-++..++-.++. ..+.+..++..+.+.+.. + ..+-++.+.+|.+...
T Consensus 60 lrdsl~thl~~l~~~~~-~i~tQL~vavA~Lal~~~~--W~n~I~e~v~~~~~~~~~-~-----~~lLeiL~VlPEE~~~ 130 (559)
T KOG2081|consen 60 LRDSLITHLKELHDHPD-VIRTQLAVAVAALALHMPE--WVNPIFELVRALSNKHPA-V-----PILLEILKVLPEETRD 130 (559)
T ss_pred HHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHHhHh--hcchHHHHHHHhhcCCcc-H-----HHHHHHHHhCcHhhcc
Confidence 45556667777666655 8888888888888877662 223355555555544433 2 2333344444333111
Q ss_pred hhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCh---HHHHHHHHHhHHHHHh--hhCHH
Q 009975 174 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE---AEVRIAAAGKVTKFCR--ILNPE 248 (521)
Q Consensus 174 ~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~---~~vr~~a~~~l~~l~~--~~~~~ 248 (521)
.... .. ..-|......++ .. ...++..+..++++.+ ..+-..++++++.-.. .++++
T Consensus 131 ~~~~-----~~----a~Rr~e~~~~l~-------~~--~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d 192 (559)
T KOG2081|consen 131 IRLT-----VG----ANRRHEFIDELA-------AQ--VSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPD 192 (559)
T ss_pred hhhh-----hh----hhhHHHHHHHHH-------Hh--HHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHH
Confidence 1110 00 001111111111 11 1334445555554322 3344445555554333 23333
Q ss_pred HHHH--hhhHHHHHhccCCcHHHHHHHHHHHHccccccCh-H---HH------HHhHHHHHHHh-hcCCChHHHHHHHHH
Q 009975 249 LAIQ--HILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-D---AT------IEQLLPIFLSL-LKDEFPDVRLNIISK 315 (521)
Q Consensus 249 ~~~~--~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~-~---~~------~~~l~~~l~~~-l~d~~~~vr~~a~~~ 315 (521)
.+.. .++......+++.+ .-..+..++..+...... + .+ ...++|....+ ....+.+-+.+.++-
T Consensus 193 ~v~a~~pLi~l~F~sl~~~~--lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RI 270 (559)
T KOG2081|consen 193 QVLASFPLITLAFRSLSDDE--LHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRI 270 (559)
T ss_pred HHHhhhHHHHHHHHHcccch--hhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHH
Confidence 3221 23333333334322 223333333332221100 0 01 11223333222 334456666666666
Q ss_pred HHHhhhhhc------hhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh-------hhHHH---HHHHHHHHc
Q 009975 316 LDQVNQVIG------IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-------FFDDK---LGALCMQWL 379 (521)
Q Consensus 316 l~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~-------~~~~~---l~~~l~~~l 379 (521)
+..+++..- ++.+ -.++..+.-..+++.|++-..-......+.+.+-.. .|.++ ++..+..-.
T Consensus 271 Ftel~eaf~~~i~~np~~~-l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~ 349 (559)
T KOG2081|consen 271 FTELGEAFVVLISTNPEEF-LRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHV 349 (559)
T ss_pred HHHHHHHHHHHHhhCCCcc-hhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHc
Confidence 666655432 2211 233444444557777766655544444443332211 12222 222222222
Q ss_pred C------------CCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhh
Q 009975 380 Q------------DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS 447 (521)
Q Consensus 380 ~------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~ 447 (521)
+ ++..+-|......+..+....|.+...+++.-.+.+ +.+.|..-++++..+..+++....+ ..
T Consensus 350 qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~--e~ 425 (559)
T KOG2081|consen 350 QLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE--EN 425 (559)
T ss_pred cCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc--cc
Confidence 1 233567888888888888888876554444444443 5677999999999999999877655 36
Q ss_pred cHHHHHHhhcCC--CCchHHHHHHHHHHHHHhhhchHH-HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975 448 RLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQSM-VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 448 ~il~~l~~~l~d--~~~~VR~~a~~~l~~~~~~~~~~~-~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~ 516 (521)
.++|-+++++.. .-..+|..++-.+|.+.+.+.... ..+-++..+.+...+.. .-..|+.++..++.
T Consensus 426 ~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~ 495 (559)
T KOG2081|consen 426 TIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICS 495 (559)
T ss_pred chHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHH
Confidence 677777776433 234499999999999998876532 22333333333344433 44556666655554
No 242
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=93.49 E-value=1.7 Score=36.93 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=30.0
Q ss_pred HHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHH
Q 009975 290 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 334 (521)
Q Consensus 290 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 334 (521)
...++..+.++-.+++...|..+-.+++..+..+|++.+. .++|
T Consensus 39 l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL-~~lP 82 (198)
T PF08161_consen 39 LKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVL-SILP 82 (198)
T ss_pred HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHH-HHCC
Confidence 3344555556666677788888888888888888887652 3444
No 243
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=93.38 E-value=1.9 Score=34.43 Aligned_cols=76 Identities=5% Similarity=0.054 Sum_probs=60.8
Q ss_pred HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH----hhcHHHHHHhhcC-CCCchHHHHHHHHHHHHHhhhch
Q 009975 407 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQ 481 (521)
Q Consensus 407 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~-d~~~~VR~~a~~~l~~~~~~~~~ 481 (521)
....+..|.+.++++|+++...|+..+..+.+.+|..+. ...++..+.+++. .+.+.||..++..+......+..
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 355677788888889999999999999999998887653 3567777777776 56778999999999998887754
Q ss_pred H
Q 009975 482 S 482 (521)
Q Consensus 482 ~ 482 (521)
+
T Consensus 119 ~ 119 (142)
T cd03569 119 K 119 (142)
T ss_pred C
Confidence 3
No 244
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.30 E-value=4 Score=33.69 Aligned_cols=58 Identities=16% Similarity=0.144 Sum_probs=30.6
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCcc---------ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC
Q 009975 187 KSWRVRYMVANQLYELCEAVGPEPT---------RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 246 (521)
Q Consensus 187 ~~~~vR~~~~~~l~~i~~~~~~~~~---------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 246 (521)
+.+.++..++..+..+.....+... .+.+++.+.+++++ ..+...++.+|..+....+
T Consensus 80 ~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 80 DPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 3444555566665555544332110 12345555555555 4566677777777766554
No 245
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.23 E-value=1.3 Score=37.41 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=46.8
Q ss_pred HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh
Q 009975 407 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 479 (521)
Q Consensus 407 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~ 479 (521)
.+..++.+.+...+++..+|..|++.+..+... |- ......+|.++.+..|+++.+|..|...+..+.+..
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-GL-vnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQ-GL-VNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-CC-CChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 345566666667777777777777777777651 10 012456777777777777777777777777776554
No 246
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=93.21 E-value=3.9 Score=40.25 Aligned_cols=209 Identities=15% Similarity=0.104 Sum_probs=121.3
Q ss_pred HhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHH
Q 009975 19 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL 98 (521)
Q Consensus 19 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l 98 (521)
..++.++..+.+++-.-+|..|.-.+..+.+.+..... ++....+...+.+...+...+ +.+......
T Consensus 209 ld~~~W~~sms~st~r~~RhtaT~~c~liq~~Lc~qa~---------~lsEKksR~ne~~l~~ln~sl---~~d~i~dic 276 (740)
T COG5537 209 LDYIGWALSMSNSTVRCFRHTATSCCRLIQKKLCVQAF---------SLSEKKSRMNELALYDLNPSL---IRDEIKDIC 276 (740)
T ss_pred HHHHHHHHhccCCceeeeehhhHHHHHHHHHHHHHHHH---------HHHHHhhhHHHHHHHhhcchH---HHHHHHHHH
Confidence 45677777777777777788888777766664432211 111111111111111111111 122223333
Q ss_pred HHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhh---
Q 009975 99 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH--- 175 (521)
Q Consensus 99 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~--- 175 (521)
...+.+-..|-++.+|..+...|+.....++.....-..+...-.++.|.+..||....+++..+.++.+..+...+
T Consensus 277 dsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~e 356 (740)
T COG5537 277 DSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVE 356 (740)
T ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 44555667888999999999999999988876555555666666778899999999999999999998775432222
Q ss_pred -hHHHHHH-hcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHh
Q 009975 176 -ILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR 243 (521)
Q Consensus 176 -l~~~l~~-~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 243 (521)
+..-+.+ +..|.+- ||..+.+.+..+.. .|- ....-+.++..++-|..+.-|+...+.+..+++
T Consensus 357 RFk~rILE~~r~D~d~-VRi~sik~l~~lr~-lg~--L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 357 RFKDRILEFLRTDSDC-VRICSIKSLCYLRI-LGV--LSSSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHHHHHHHhhccch-hhHHHHHHHHHHHH-hcc--cchhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 2223333 4456565 99999888776543 221 112223444455555555433333333333333
No 247
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=93.20 E-value=2.7 Score=33.40 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=57.3
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH----hhcHHHHHHhhcCC------CCchHHHHHHHHHHHHHh
Q 009975 408 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD------RVPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 408 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d------~~~~VR~~a~~~l~~~~~ 477 (521)
...+..+...++++|+++...|+..+..+.+.+|..+. ...++..+.+++.+ +...||...+..+.....
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 44566777788888999999999999999988887653 35677777777753 578899999999988887
Q ss_pred hhc
Q 009975 478 IVD 480 (521)
Q Consensus 478 ~~~ 480 (521)
.+.
T Consensus 117 ~f~ 119 (139)
T cd03567 117 ELP 119 (139)
T ss_pred Hhc
Confidence 765
No 248
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.18 E-value=16 Score=40.17 Aligned_cols=107 Identities=18% Similarity=0.176 Sum_probs=69.6
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhhhh----hchhh----HhhhHHHHHHHHh--cCCChH---H----HHHHHHHh
Q 009975 293 LLPIFLSLLKDEFPDVRLNIISKLDQVNQV----IGIDL----LSQSLLPAIVELA--EDRHWR---V----RLAIIEYI 355 (521)
Q Consensus 293 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~----~~~~~----~~~~~~~~l~~~~--~~~~~~---v----r~~~~~~l 355 (521)
++..+.+++.|+-++||.+|++.+-++... +|+.. +...++|.+...- ....|. + -...+-.+
T Consensus 998 ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~lti 1077 (1610)
T KOG1848|consen 998 LLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTI 1077 (1610)
T ss_pred HHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhH
Confidence 455667788899999999999999888654 44433 2345556554210 001121 1 23455567
Q ss_pred HHHHhhhChhh-----------hHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 009975 356 PLLASQLGVGF-----------FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 399 (521)
Q Consensus 356 ~~l~~~~~~~~-----------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 399 (521)
+.+++.++..+ ..+.++..+..+..|.++++..+++.++.++..
T Consensus 1078 sgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1078 SGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 77777665431 124466667777889999999999999998864
No 249
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.17 E-value=0.34 Score=40.97 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=58.5
Q ss_pred hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 009975 446 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 518 (521)
Q Consensus 446 ~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~ 518 (521)
.+.+++.+++++.+++..||..|++.+..+... |-- .-....|.+..|..|+++.+|..|...+..+.+.-
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-GLv-nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQ-GLV-NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-CCC-ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 456788888899999999999999999998874 211 11457899999999999999999999999887654
No 250
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=11 Score=37.89 Aligned_cols=299 Identities=14% Similarity=0.129 Sum_probs=147.9
Q ss_pred hhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHH---HHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHH
Q 009975 21 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPL---VKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE 97 (521)
Q Consensus 21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~---i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 97 (521)
-+..+.+.+-++++.+...|+-.++.... .++++.-|. +...+++++...|..++--++..+.+... .+
T Consensus 416 gL~qldkylys~~~~ikaGaLLgigi~~~-----gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~---e~ 487 (878)
T KOG2005|consen 416 GLEQLDKYLYSDESYIKAGALLGIGISNS-----GVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQR---EE 487 (878)
T ss_pred hHHHHHHHhhcCCchhhhccceeeeeecc-----ccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCch---HH
Confidence 55666665555666677676655544333 333344444 44555566777888887666777765543 34
Q ss_pred HHHHHHHhcCCCCh--HHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhc--CCChhHHHHHHHHHHHHhhhcChhhhh
Q 009975 98 LRSIYTQLCQDDMP--MVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ--DDQDSVRLLAVEGCAALGKLLEPQDCV 173 (521)
Q Consensus 98 l~~~l~~l~~~~~~--~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~--d~~~~vr~~a~~~l~~l~~~~~~~~~~ 173 (521)
++..+...+.|.+. +|.-.+.-+||.+.----.+.....++..+.+-.. -++...|..+.-.- .-++++.+..
T Consensus 488 V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~---llflgkqe~~ 564 (878)
T KOG2005|consen 488 VLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLA---LLFLGKQESV 564 (878)
T ss_pred HHHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHH---HHHhcccchH
Confidence 44344445555443 45555555555543211123344444444433322 23445666553221 1122222222
Q ss_pred hhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCh--H-HHHHHHHH--hHHHHHhhhCHH
Q 009975 174 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE--A-EVRIAAAG--KVTKFCRILNPE 248 (521)
Q Consensus 174 ~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~--~-~vr~~a~~--~l~~l~~~~~~~ 248 (521)
..+...+ ..-...+|+.+-- +-..+...|.......=-..+...+.+.+ . .-+..|+- ++-.+++.+|.+
T Consensus 565 d~~~e~~----~~i~~~~~~~~~~-lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~e 639 (878)
T KOG2005|consen 565 DAVVETI----KAIEGPIRKHESI-LVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSE 639 (878)
T ss_pred HHHHHHH----HHhhhHHHHHHHH-HHHHhhccccCceEEechhhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhH
Confidence 2222222 1112234443333 33344444433221100022333333321 1 11112221 122333333333
Q ss_pred HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhH
Q 009975 249 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 328 (521)
Q Consensus 249 ~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 328 (521)
-.+-.+-.++.-.++.+|++.--+++-++..-++ -.++..+.+..+|.+.+|-.+++-+++-+........+
T Consensus 640 ----M~lR~f~h~l~yge~~iRravPLal~llsvSNPq----~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARl 711 (878)
T KOG2005|consen 640 ----MVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQ----VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARL 711 (878)
T ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCc----chHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHH
Confidence 3455566667778899999998888877643332 24677888899999999999999998877654332222
Q ss_pred hhhHHHHHHH-HhcCCC
Q 009975 329 SQSLLPAIVE-LAEDRH 344 (521)
Q Consensus 329 ~~~~~~~l~~-~~~~~~ 344 (521)
..++..+.. ..+|.+
T Consensus 712 -a~mLrqlaSYyyKd~~ 727 (878)
T KOG2005|consen 712 -AQMLRQLASYYYKDSK 727 (878)
T ss_pred -HHHHHHHHHHHhccch
Confidence 344444433 234544
No 251
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=92.95 E-value=4 Score=32.70 Aligned_cols=87 Identities=10% Similarity=0.077 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh----hhhhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhCCC
Q 009975 135 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPE 209 (521)
Q Consensus 135 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~~~~ 209 (521)
.+.+..+.+-++..++.+...|+.++..+.++.+. +.....++..+..++.+ .+..||..+.+.+...+..++.+
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~ 115 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKND 115 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 34555566666777888888899999999888876 33445567777777777 78889999999999888888755
Q ss_pred ccccchHHHHHH
Q 009975 210 PTRMDLVPAYVR 221 (521)
Q Consensus 210 ~~~~~l~~~l~~ 221 (521)
.....+...+..
T Consensus 116 ~~l~~i~~~y~~ 127 (144)
T cd03568 116 PSLSLMSDLYKK 127 (144)
T ss_pred cccHHHHHHHHH
Confidence 433333333333
No 252
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=13 Score=41.34 Aligned_cols=206 Identities=19% Similarity=0.172 Sum_probs=133.9
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHH----HHHhcCCChHHHHHHHHHhHHHHhhhChh--hh
Q 009975 294 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI----VELAEDRHWRVRLAIIEYIPLLASQLGVG--FF 367 (521)
Q Consensus 294 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~ 367 (521)
+..+++-+.-.++..+..|+..+..++.....+.. ..++|.. .++..|.+.+||......+..+...+++. .+
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~-~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~ 121 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEEL-KGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPF 121 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHH-hhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34445555567788999999999998877665544 2345443 45678999999999999999888888764 45
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHH----HHHhhhHHHHHhhh--------cC-----------cchH
Q 009975 368 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMI--------NN-----------PHYL 424 (521)
Q Consensus 368 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l--------~~-----------~~~~ 424 (521)
...++|..+-...|....|-.+|...+......-... .....+.+...+.+ .| .-.|
T Consensus 122 LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~R 201 (1312)
T KOG0803|consen 122 LKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQR 201 (1312)
T ss_pred HHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHH
Confidence 6667788777888888888877776665443211000 01233333333321 11 1235
Q ss_pred HHHHHHHHHHHhhcccChHHHh----h---c--HHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH---HHHhhHHHHH
Q 009975 425 YRMTILRAISLLAPVMGSEITC----S---R--LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCL 492 (521)
Q Consensus 425 ~r~~a~~~l~~l~~~~~~~~~~----~---~--il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~---~~~~~~~~~l 492 (521)
+-..++-++..+....|...-. + . -...+++.+.++.+.+|.+..+++..+...+..- ....++.|.+
T Consensus 202 vi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~ 281 (1312)
T KOG0803|consen 202 VISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVL 281 (1312)
T ss_pred HHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHH
Confidence 5566667777777555543211 1 1 2356788899999999999999999988766543 2236677777
Q ss_pred HHhcCCCC
Q 009975 493 VELTEDPD 500 (521)
Q Consensus 493 ~~l~~D~~ 500 (521)
.....+.+
T Consensus 282 ~~~~~~~d 289 (1312)
T KOG0803|consen 282 LGSIDSLD 289 (1312)
T ss_pred Hccccccc
Confidence 77666665
No 253
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=92.85 E-value=2.8 Score=37.26 Aligned_cols=131 Identities=15% Similarity=0.197 Sum_probs=72.1
Q ss_pred HcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCc------chHHHHHHHHHHHHhhccc--ChHHHhhcH
Q 009975 378 WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP------HYLYRMTILRAISLLAPVM--GSEITCSRL 449 (521)
Q Consensus 378 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~------~~~~r~~a~~~l~~l~~~~--~~~~~~~~i 449 (521)
++.+.+...|.+|+.++.. +....+++|.+..++++. |...-.+.+.....+.+.- =.+.+...+
T Consensus 206 l~dEs~~~~r~aAl~sLr~-------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hql 278 (450)
T COG5095 206 LLDESDEQTRDAALESLRN-------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQL 278 (450)
T ss_pred HHHHHHHHHHHHHHHHhcc-------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHH
Confidence 3455677788888776532 222456677766665542 3444455555555555411 113345667
Q ss_pred HHHHHhhc------CCC----CchHHHHHHHHHHHHHhhhchHHH--HhhHHHHHHH--hcCCCCccHHHHHHHHHHHHH
Q 009975 450 LPVVINAS------KDR----VPNIKFNVAKVLQSLIPIVDQSMV--EKTIRPCLVE--LTEDPDVDVRFFATQAIQSID 515 (521)
Q Consensus 450 l~~l~~~l------~d~----~~~VR~~a~~~l~~~~~~~~~~~~--~~~~~~~l~~--l~~D~~~~vr~~a~~al~~l~ 515 (521)
+|.++.++ +++ ...+|.-|+..++.++..++..+. .+.+...+.+ +-..........|.+++..+.
T Consensus 279 mPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ 358 (450)
T COG5095 279 MPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILS 358 (450)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhc
Confidence 77776653 122 234888899998888888776533 2333333333 223344455556666665544
No 254
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.71 E-value=6 Score=36.80 Aligned_cols=143 Identities=11% Similarity=0.068 Sum_probs=78.1
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHH--hhhHHHHHhhhc----CcchHHHHHHHHHHHHhhcc--cChHHH
Q 009975 374 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM--QHITPQVLEMIN----NPHYLYRMTILRAISLLAPV--MGSEIT 445 (521)
Q Consensus 374 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~----~~~~~~r~~a~~~l~~l~~~--~~~~~~ 445 (521)
.+++.+..+++.++..++..+..+....+..... +.+++.+.+.+. +++......++.+++.+... +...++
T Consensus 109 ~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~ 188 (312)
T PF03224_consen 109 PFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFW 188 (312)
T ss_dssp HHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHH
Confidence 3445788889999999999999998654332211 245555555544 35566778899999998852 222334
Q ss_pred hhcHHHHHHhhc-----CCC--CchHHHHHHHHHHHHHhh--hchHHHHhhHHHHHHHhcC-CCCccHHHHHHHHHHHHH
Q 009975 446 CSRLLPVVINAS-----KDR--VPNIKFNVAKVLQSLIPI--VDQSMVEKTIRPCLVELTE-DPDVDVRFFATQAIQSID 515 (521)
Q Consensus 446 ~~~il~~l~~~l-----~d~--~~~VR~~a~~~l~~~~~~--~~~~~~~~~~~~~l~~l~~-D~~~~vr~~a~~al~~l~ 515 (521)
....++.+...+ .+. ...+...++-++-.+.-. .-.......++|.|.++.. .....|-+.+..++..+.
T Consensus 189 ~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~ 268 (312)
T PF03224_consen 189 KSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLL 268 (312)
T ss_dssp THHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTT
T ss_pred hcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 456677777766 222 223334444444433211 1112223447777776543 456677777777776665
Q ss_pred H
Q 009975 516 H 516 (521)
Q Consensus 516 ~ 516 (521)
+
T Consensus 269 ~ 269 (312)
T PF03224_consen 269 S 269 (312)
T ss_dssp S
T ss_pred h
Confidence 4
No 255
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=92.64 E-value=8.2 Score=35.47 Aligned_cols=180 Identities=14% Similarity=0.099 Sum_probs=122.6
Q ss_pred HHHHHHHHhhcCCC-hhHHHHHHHHHHHHhhhcChhhhhhh---hHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcc
Q 009975 136 DIMSIFEDLTQDDQ-DSVRLLAVEGCAALGKLLEPQDCVAH---ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT 211 (521)
Q Consensus 136 ~l~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~---l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~ 211 (521)
.+..-+.++++..- ..|-..|.++...+.+.++++...++ ..|-+..++...+-.||-.....+....-.++....
T Consensus 54 ~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~ 133 (307)
T PF04118_consen 54 QVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALR 133 (307)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHH
Confidence 34444555555443 47888999999999999998765554 345555566677778999888888777655554211
Q ss_pred --ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccC----
Q 009975 212 --RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG---- 285 (521)
Q Consensus 212 --~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~---- 285 (521)
...++..+.-.++|+..++...+...+..+...++.+.|...++-.+. .++.+|..+...+..-.+...
T Consensus 134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~ 208 (307)
T PF04118_consen 134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDEL 208 (307)
T ss_pred HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCccccccc
Confidence 123333344456788899999999999999999998877666665553 456688888877766554433
Q ss_pred --hHHH--------HHhHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 009975 286 --KDAT--------IEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 320 (521)
Q Consensus 286 --~~~~--------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 320 (521)
.... ..-++..+...++|++--|+++++.-+-.-.
T Consensus 209 ~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~ 253 (307)
T PF04118_consen 209 SLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHF 253 (307)
T ss_pred ccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhC
Confidence 1000 2346778888899998888888876665543
No 256
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=92.47 E-value=0.35 Score=28.87 Aligned_cols=30 Identities=30% Similarity=0.310 Sum_probs=18.6
Q ss_pred hhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 009975 486 KTIRPCLVELTEDPDVDVRFFATQAIQSID 515 (521)
Q Consensus 486 ~~~~~~l~~l~~D~~~~vr~~a~~al~~l~ 515 (521)
.-.+|.|.+++.+++.+|+..|++|+..|.
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 345566666666666666666666666554
No 257
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=92.38 E-value=2.2 Score=33.67 Aligned_cols=75 Identities=11% Similarity=0.145 Sum_probs=58.7
Q ss_pred HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHh----hcHHHHHHhhcCC---CCchHHHHHHHHHHHHHhhh
Q 009975 407 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC----SRLLPVVINASKD---RVPNIKFNVAKVLQSLIPIV 479 (521)
Q Consensus 407 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~----~~il~~l~~~l~d---~~~~VR~~a~~~l~~~~~~~ 479 (521)
....+..|...++++++.+...|+..+..+...+|..+.. ..++..+.+++.+ ..+.||..++..+......+
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3556777888888889999999999999999988875532 3566667777765 47789999999999988877
Q ss_pred ch
Q 009975 480 DQ 481 (521)
Q Consensus 480 ~~ 481 (521)
+.
T Consensus 115 ~~ 116 (133)
T cd03561 115 GG 116 (133)
T ss_pred cC
Confidence 65
No 258
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.36 E-value=2.2 Score=39.85 Aligned_cols=111 Identities=15% Similarity=0.055 Sum_probs=82.9
Q ss_pred HHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch--hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhh---h
Q 009975 99 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC---V 173 (521)
Q Consensus 99 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~---~ 173 (521)
+.-+...+++.+..||+.|...+..+....+.. .....+++.+..+..|++..||....+++..+.....++.. .
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 444455567888999999999999988773322 24566778888888999999999999999988777666542 2
Q ss_pred hhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCC
Q 009975 174 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE 209 (521)
Q Consensus 174 ~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~ 209 (521)
.-+++.+.....+-.+.+|..+...+..++..+++.
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~ 175 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDT 175 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence 336667777778888888888888887777665543
No 259
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=92.33 E-value=5 Score=32.25 Aligned_cols=141 Identities=11% Similarity=0.146 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCC-cH
Q 009975 306 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK-VY 384 (521)
Q Consensus 306 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~ 384 (521)
+.||...+..+..++...-++.+ +.+++.+.+..+. +......++..+..+.+.+.. ..++. ..
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~W-p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~-------------~~~~~~~~ 66 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQW-PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITD-------------FRRSSLSQ 66 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTS-TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT-------------SHCCHSHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhC-chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh-------------hhchhhhH
Confidence 35677777788877776555554 6677777777666 345555555555555544322 00111 11
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcC----cchHHHHHHHHHHHHhhcccChHHHh-hcHHHHHHhhcCC
Q 009975 385 SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN----PHYLYRMTILRAISLLAPVMGSEITC-SRLLPVVINASKD 459 (521)
Q Consensus 385 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~----~~~~~r~~a~~~l~~l~~~~~~~~~~-~~il~~l~~~l~d 459 (521)
.-|......+..- ...++..+.+.+.. .+......++.+++........+.+. ..+++.+++.+.+
T Consensus 67 ~r~~~l~~~l~~~---------~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~ 137 (148)
T PF08389_consen 67 ERRRELKDALRSN---------SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQS 137 (148)
T ss_dssp HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCC
Confidence 1222222222211 12233333333322 23777888889999888866665544 4589999998865
Q ss_pred CCchHHHHHHHHH
Q 009975 460 RVPNIKFNVAKVL 472 (521)
Q Consensus 460 ~~~~VR~~a~~~l 472 (521)
+. .|..|+++|
T Consensus 138 ~~--~~~~A~~cl 148 (148)
T PF08389_consen 138 PE--LREAAAECL 148 (148)
T ss_dssp CC--CHHHHHHHH
T ss_pred HH--HHHHHHHhC
Confidence 44 488888775
No 260
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=92.23 E-value=0.43 Score=28.49 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=23.3
Q ss_pred hcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 009975 447 SRLLPVVINASKDRVPNIKFNVAKVLQSLI 476 (521)
Q Consensus 447 ~~il~~l~~~l~d~~~~VR~~a~~~l~~~~ 476 (521)
...+|.+.++++++++.||..|+++|+.++
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 456778888888888888888888887764
No 261
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=92.21 E-value=0.44 Score=34.68 Aligned_cols=69 Identities=17% Similarity=0.202 Sum_probs=51.4
Q ss_pred CcchHHHHHHHHHHHHhhcccChHH--HhhcHHHHHHhhcCCCCch--HHHHHHHHHHHHHhhhchHHHHhhHHHHH
Q 009975 420 NPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPN--IKFNVAKVLQSLIPIVDQSMVEKTIRPCL 492 (521)
Q Consensus 420 ~~~~~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~--VR~~a~~~l~~~~~~~~~~~~~~~~~~~l 492 (521)
+.+|.+|..|...++.++..++... ..+.+...+.+.+.|+... .+-.|+..|..+ |++.+...++|-+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l 89 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNL 89 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCc
Confidence 5689999999999999999888643 5678888888888877543 466676666555 5566666666654
No 262
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=92.12 E-value=0.18 Score=30.37 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=13.6
Q ss_pred cchHHHHHHhcCCChHHHHHHHHH
Q 009975 213 MDLVPAYVRLLRDNEAEVRIAAAG 236 (521)
Q Consensus 213 ~~l~~~l~~~l~d~~~~vr~~a~~ 236 (521)
+.+...+.+.+.|+++.||.+|++
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHH
Confidence 345555555566666666665554
No 263
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=92.08 E-value=5.2 Score=31.97 Aligned_cols=89 Identities=15% Similarity=0.082 Sum_probs=62.4
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh----hhhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCCC
Q 009975 135 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPE 209 (521)
Q Consensus 135 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~~~ 209 (521)
.+.+..+.+-++..++.+...|+.+|..+.++.+.. .....++.-+..++. ..++.||..+...+...+..++.+
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 455566666667788889999999999999887752 333445666666655 577889999999999998888766
Q ss_pred ccccchHHHHHHhc
Q 009975 210 PTRMDLVPAYVRLL 223 (521)
Q Consensus 210 ~~~~~l~~~l~~~l 223 (521)
...+.+...+..+.
T Consensus 120 ~~l~~i~~~y~~L~ 133 (142)
T cd03569 120 PQLKYVVDTYQILK 133 (142)
T ss_pred cccHHHHHHHHHHH
Confidence 44444444444443
No 264
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.87 E-value=1.1 Score=34.04 Aligned_cols=68 Identities=10% Similarity=0.109 Sum_probs=40.0
Q ss_pred HHHHHHHHhhc-CCChhHHHHHHHHHHHHhhhcChhh-h--hhhhHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009975 136 DIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQD-C--VAHILPVIVNFSQDKSWRVRYMVANQLYELC 203 (521)
Q Consensus 136 ~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~-~--~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~ 203 (521)
.++..+.+++. +.++.+-..|+.-++.++.+.+... . .-.....+.+++++++++||+.|..++..+.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 44455555552 3345556667777777777764421 1 1124556677788888888888888877665
No 265
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.69 E-value=1 Score=34.33 Aligned_cols=68 Identities=7% Similarity=0.098 Sum_probs=40.2
Q ss_pred hHHHHHhhh-cCcchHHHHHHHHHHHHhhcccChHH-Hh--hcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975 410 ITPQVLEMI-NNPHYLYRMTILRAISLLAPVMGSEI-TC--SRLLPVVINASKDRVPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 410 l~~~l~~~l-~~~~~~~r~~a~~~l~~l~~~~~~~~-~~--~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~ 477 (521)
++..|.+++ .+.+..+-..|+.=+|.++...+... +. -..-..++.++.+++++||..|+.++..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 445555555 33355566667777777776543321 11 2345667777788888888888888776653
No 266
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=91.69 E-value=3 Score=33.31 Aligned_cols=75 Identities=11% Similarity=0.148 Sum_probs=59.8
Q ss_pred HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHh----hcHHHHHHhhcCCCCc-h---HHHHHHHHHHHHHhh
Q 009975 407 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC----SRLLPVVINASKDRVP-N---IKFNVAKVLQSLIPI 478 (521)
Q Consensus 407 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~----~~il~~l~~~l~d~~~-~---VR~~a~~~l~~~~~~ 478 (521)
....+..|...++++++.+...|+..+..+.+.+|..+.. ..++..+..++.++.. . ||..++..+......
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 4667788888999999999999999999999988876543 4588888886665422 2 899999999998887
Q ss_pred hch
Q 009975 479 VDQ 481 (521)
Q Consensus 479 ~~~ 481 (521)
++.
T Consensus 120 f~~ 122 (140)
T PF00790_consen 120 FKS 122 (140)
T ss_dssp TTT
T ss_pred HCC
Confidence 744
No 267
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=91.50 E-value=2.9 Score=31.48 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=41.3
Q ss_pred cchHHHHHHHHHHHHhhcccChHH--HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHH
Q 009975 421 PHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE 485 (521)
Q Consensus 421 ~~~~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~ 485 (521)
.....|..++.+++.+.+..|... +.++++-.+...++.+ +.|..+++++..+.+.++.+.+.
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~ 91 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLG 91 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHH
Confidence 456677788888888888433321 3344554455555544 78888888888888888775543
No 268
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.39 E-value=28 Score=38.89 Aligned_cols=232 Identities=13% Similarity=0.150 Sum_probs=108.6
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCccc---cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhhhHHHHHh
Q 009975 187 KSWRVRYMVANQLYELCEAVGPEPTR---MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKEL 261 (521)
Q Consensus 187 ~~~~vR~~~~~~l~~i~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~ 261 (521)
.++..|..+.+.++++......+... +.....+.++..|++..||......+..+...++.. .+.+.++|...-.
T Consensus 53 kD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl~~ 132 (1312)
T KOG0803|consen 53 RDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWLGG 132 (1312)
T ss_pred cChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhe
Confidence 45555666666666555443332221 112233444556666666666666666666655433 3344444444444
Q ss_pred ccCCcHHHHHHHHHHHHccccc-cChHH---HHHhHHHHHHHhh----c---------------CCChHHHHHHHHHHHH
Q 009975 262 SSDSSQHVRSALASVIMGMAPL-LGKDA---TIEQLLPIFLSLL----K---------------DEFPDVRLNIISKLDQ 318 (521)
Q Consensus 262 ~~d~~~~vr~~~~~~l~~i~~~-~~~~~---~~~~l~~~l~~~l----~---------------d~~~~vr~~a~~~l~~ 318 (521)
..|....|-.+|-..+...... ..... ....+.+.....+ . .....|-..++..+..
T Consensus 133 ~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ssLl~l~~ 212 (1312)
T KOG0803|consen 133 QFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISSSLLLLLK 212 (1312)
T ss_pred ecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHHHHHHHHH
Confidence 4455555544444444332220 00000 0112222222221 0 0112344445555555
Q ss_pred hhhhhchhhHhhhH---------HHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh---hhHHHHHHHHHHHcCCCcHHH
Q 009975 319 VNQVIGIDLLSQSL---------LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSI 386 (521)
Q Consensus 319 ~~~~~~~~~~~~~~---------~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~v 386 (521)
+....|.+.-.... -..+-.+.+++.+.+|.+..+.+..+.+....- .-..++.|++.....+.+ -|
T Consensus 213 l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~d-~~ 291 (1312)
T KOG0803|consen 213 LFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDSLD-HV 291 (1312)
T ss_pred HHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccccccc-cc
Confidence 55554432211101 123334668888999999888888777665432 123556677776666665 33
Q ss_pred HHHHHHHHHHHHHHhCHHH------HHhhhHHHHHhhhc
Q 009975 387 RDAAANNLKRLAEEFGPEW------AMQHITPQVLEMIN 419 (521)
Q Consensus 387 r~~a~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~ 419 (521)
-....+.+-.+...+...+ ....++|.+.+...
T Consensus 292 c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 292 CSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred cHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 3333333332223332222 23456666665544
No 269
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=91.35 E-value=2.3 Score=33.55 Aligned_cols=75 Identities=13% Similarity=0.171 Sum_probs=57.4
Q ss_pred HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH----hhcHHHHHHhhcCCCCc--hHHHHHHHHHHHHHhhhc
Q 009975 407 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKDRVP--NIKFNVAKVLQSLIPIVD 480 (521)
Q Consensus 407 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d~~~--~VR~~a~~~l~~~~~~~~ 480 (521)
....+..|.+.++++++.+...|+..+..+...+|..+. ...++..+..++.++.. .||..++..+......+.
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 345667777888888899999999999999988887653 35677888877776533 389999999988887764
Q ss_pred h
Q 009975 481 Q 481 (521)
Q Consensus 481 ~ 481 (521)
.
T Consensus 115 ~ 115 (133)
T smart00288 115 N 115 (133)
T ss_pred C
Confidence 3
No 270
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=91.27 E-value=18 Score=36.46 Aligned_cols=252 Identities=15% Similarity=0.168 Sum_probs=130.7
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChh--HHHHHHHHHHHHhhhcChhhh
Q 009975 95 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS--VRLLAVEGCAALGKLLEPQDC 172 (521)
Q Consensus 95 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~--vr~~a~~~l~~l~~~~~~~~~ 172 (521)
++-.+.++...+++++..+|-.++-.||-...... .++++..+...+.|.+.. |...|.-.++-+.-.-.+++.
T Consensus 450 ~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq----~e~V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dv 525 (878)
T KOG2005|consen 450 CDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQ----REEVLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDV 525 (878)
T ss_pred cCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCc----hHHHHHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHH
Confidence 55566777778888888899888888876443222 223333555555665544 555555555544322223444
Q ss_pred hhhhHHHHHHhcC--CCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHH
Q 009975 173 VAHILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA 250 (521)
Q Consensus 173 ~~~l~~~l~~~~~--d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 250 (521)
...++..+.+-.+ -.+.-.|..+. .++.+ ..+.. +........++.-+..+|+.+- .+...+.+.|.-..
T Consensus 526 ts~ilqtlmekse~El~d~~~RFL~L-GL~ll--flgkq----e~~d~~~e~~~~i~~~~~~~~~-~lv~~caYaGTGnv 597 (878)
T KOG2005|consen 526 TSSILQTLMEKSETELEDQWFRFLAL-GLALL--FLGKQ----ESVDAVVETIKAIEGPIRKHES-ILVKSCAYAGTGNV 597 (878)
T ss_pred HHHHHHHHHHhhhhhhhchHHHHHHH-HHHHH--Hhccc----chHHHHHHHHHHhhhHHHHHHH-HHHHHhhccccCce
Confidence 4555555554332 13333444332 22222 12221 2223333333222233443332 22223333332111
Q ss_pred HHhhh-HHHHHhccCCcHH---HHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchh
Q 009975 251 IQHIL-PCVKELSSDSSQH---VRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 326 (521)
Q Consensus 251 ~~~~~-~~l~~~~~d~~~~---vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 326 (521)
. .+- ..+...+.+.... -...++ ++--.-.+|++.-.+..+..+..++.=.++.+|+..--+++-+...- |.
T Consensus 598 l-~Iq~q~ll~~cgE~~~~~e~~~~~av--LgiAliAMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSN-Pq 673 (878)
T KOG2005|consen 598 L-KIQSQLLLSFCGEHDADLESEQELAV--LGIALIAMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSN-PQ 673 (878)
T ss_pred E-EechhhhhhhcCCCccchhhhccchh--hhhhhhhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCC-Cc
Confidence 0 000 1222333322211 111222 22222346777667777888888888888999998877777665321 11
Q ss_pred hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh
Q 009975 327 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 365 (521)
Q Consensus 327 ~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~ 365 (521)
-.+++.+.++..|.+..+-..++-+++.+.......
T Consensus 674 ---~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNA 709 (878)
T KOG2005|consen 674 ---VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNA 709 (878)
T ss_pred ---chHHHHHHHhccCcchHHHHHHHHHhccccCCcchH
Confidence 467888888999999999888888887765544443
No 271
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=91.12 E-value=0.4 Score=28.81 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHH
Q 009975 369 DKLGALCMQWLQDKVYSIRDAAANN 393 (521)
Q Consensus 369 ~~l~~~l~~~l~d~~~~vr~~a~~~ 393 (521)
+.+...+...+.|+.+.||.+|.+.
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4566666777777777777777654
No 272
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=90.91 E-value=4.9 Score=31.95 Aligned_cols=72 Identities=7% Similarity=0.030 Sum_probs=48.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhH----HHHHHHHHHHcCC------CcHHHHHHHHHHHHHHHHH
Q 009975 331 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQD------KVYSIRDAAANNLKRLAEE 400 (521)
Q Consensus 331 ~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~----~~l~~~l~~~l~d------~~~~vr~~a~~~l~~l~~~ 400 (521)
..+..+..-++++++.+...++..+..+++++|..+.. ..++.-+..++.+ .+..||.-++..+..+...
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34555666667777788888888888888888775422 3344445555542 5678888888888888777
Q ss_pred hC
Q 009975 401 FG 402 (521)
Q Consensus 401 ~~ 402 (521)
++
T Consensus 118 f~ 119 (139)
T cd03567 118 LP 119 (139)
T ss_pred hc
Confidence 65
No 273
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=90.81 E-value=9.5 Score=32.54 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=37.9
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 009975 139 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 205 (521)
Q Consensus 139 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~ 205 (521)
+.+.....+++.-+|..+..++...... +.....++.++.....|++..||.++..+|..++..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 5566666666666666665555444333 223455666666666666666777666666665543
No 274
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=90.75 E-value=22 Score=36.55 Aligned_cols=96 Identities=14% Similarity=0.085 Sum_probs=65.3
Q ss_pred cCcchHHHHHHHHHHHHhhcccCh-------HH-HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHH-HHhhHH
Q 009975 419 NNPHYLYRMTILRAISLLAPVMGS-------EI-TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM-VEKTIR 489 (521)
Q Consensus 419 ~~~~~~~r~~a~~~l~~l~~~~~~-------~~-~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~-~~~~~~ 489 (521)
.+.+..+-++++.+|..+.-..+. .. -.+..+|.++.++..++..|-.+++.+|..+........ +..+.+
T Consensus 529 ~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~ 608 (717)
T KOG1048|consen 529 LSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAI 608 (717)
T ss_pred HhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchH
Confidence 455677778888888877753221 22 246788999999999999999999999999987654433 346777
Q ss_pred HHHHHhcCCCC------ccHHHHHHHHHHHH
Q 009975 490 PCLVELTEDPD------VDVRFFATQAIQSI 514 (521)
Q Consensus 490 ~~l~~l~~D~~------~~vr~~a~~al~~l 514 (521)
|-|.+.+-+.. +++-..++.++-.+
T Consensus 609 ~~lv~~Lp~~~~~~~~sedtv~~vc~tl~ni 639 (717)
T KOG1048|consen 609 PDLVRCLPGSGPSTSLSEDTVRAVCHTLNNI 639 (717)
T ss_pred HHHHHhCcCCCCCcCchHHHHHHHHHhHHHH
Confidence 87777665543 34444444444433
No 275
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.22 E-value=26 Score=36.62 Aligned_cols=361 Identities=10% Similarity=0.053 Sum_probs=184.7
Q ss_pred hHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCC-----hHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC-
Q 009975 151 SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS-----WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR- 224 (521)
Q Consensus 151 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~-----~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~- 224 (521)
..|....+++....+.++ +.....+...+.++..|.+ |..-.+++-.+..++..++... +.-+|-+.+.+-
T Consensus 439 ~YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~as 515 (982)
T KOG2022|consen 439 SYRKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSAS 515 (982)
T ss_pred HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhccc
Confidence 457766777777666666 3345556666666665543 6777777878888888877654 334666666542
Q ss_pred ----CChHHHHHHHHHhHHHHHhhhCHHH-HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHH--HHHhHHHHH
Q 009975 225 ----DNEAEVRIAAAGKVTKFCRILNPEL-AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIF 297 (521)
Q Consensus 225 ----d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~--~~~~l~~~l 297 (521)
-.++..-..+...++..+..++.+. ..+..+|.+.+.+..+... ..+...+..+++.+..+. +.+.++...
T Consensus 516 ik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s--~q~i~tl~tlC~~C~~~L~py~d~~~a~~ 593 (982)
T KOG2022|consen 516 IKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKES--EQAISTLKTLCETCPESLDPYADQFSAVC 593 (982)
T ss_pred cccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchHH--HHHHHHHHHHHHhhhhhCchHHHHHHHHH
Confidence 2356677788888888888876653 3456777777777544433 333444666665543321 223344444
Q ss_pred HHhhcCC--ChHHHHHHHHHHHHhhhhhchhhHhhhHHHHH----HH---Hh--cCCChHHHHHHHHHh---HHHHhhhC
Q 009975 298 LSLLKDE--FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI----VE---LA--EDRHWRVRLAIIEYI---PLLASQLG 363 (521)
Q Consensus 298 ~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l----~~---~~--~~~~~~vr~~~~~~l---~~l~~~~~ 363 (521)
...+... .+.+|..+..++|.+.+.+.++...+.+...+ .+ .+ +-+++..+...+..+ +.+...+.
T Consensus 594 ~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~ 673 (982)
T KOG2022|consen 594 YEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLI 673 (982)
T ss_pred HHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccC
Confidence 4444332 46789999999999998887654322222221 11 11 113333333333333 33333321
Q ss_pred h----------------------hhhHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhc
Q 009975 364 V----------------------GFFDDKLGALCMQWLQ--DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN 419 (521)
Q Consensus 364 ~----------------------~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 419 (521)
. -.+..+++|.+.+.++ -.+.+|-++++...+.=....+.. +.+..+|.+..+.-
T Consensus 674 ~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~s-F~~p~l~~l~~Fi~ 752 (982)
T KOG2022|consen 674 NKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTS-FPEPMLPSLCPFIV 752 (982)
T ss_pred CCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhcccccccc-chhhhHHHHHHHHH
Confidence 1 0123455666654433 233444455444443333333333 33445555544332
Q ss_pred ----Ccch-HHHHHHHHHHHHhhc-ccChHH--HhhcHHHHHHhhcCC----CCchHHHHHHHHHHHHHhhhc------h
Q 009975 420 ----NPHY-LYRMTILRAISLLAP-VMGSEI--TCSRLLPVVINASKD----RVPNIKFNVAKVLQSLIPIVD------Q 481 (521)
Q Consensus 420 ----~~~~-~~r~~a~~~l~~l~~-~~~~~~--~~~~il~~l~~~l~d----~~~~VR~~a~~~l~~~~~~~~------~ 481 (521)
.+.. ..-..+...+..... .+++.. -........+.+..+ +.+++-......+..+.+..+ .
T Consensus 753 r~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~ 832 (982)
T KOG2022|consen 753 RFLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSM 832 (982)
T ss_pred HhccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccch
Confidence 2211 000111111111111 111100 001111122222222 245566666667766665432 2
Q ss_pred HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 009975 482 SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 517 (521)
Q Consensus 482 ~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~ 517 (521)
..+...+++.-.++++-+++-.-..+..-+..+...
T Consensus 833 ~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~ 868 (982)
T KOG2022|consen 833 LAFTSLILICAFILLNSPEPTTIRAASQFLTALATY 868 (982)
T ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhh
Confidence 356677887777888887776666666666665543
No 276
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=90.14 E-value=36 Score=38.07 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=46.0
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh--h-hHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 009975 330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--F-FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 399 (521)
Q Consensus 330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 399 (521)
...+..+++.+++.+-.+...++..|..+......+ + .....++.+.+++...+..+-+.++.+|..+..
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 345666666666666666666666665554433332 1 223357888899999998888888888887764
No 277
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=89.89 E-value=6.6 Score=29.59 Aligned_cols=16 Identities=0% Similarity=0.113 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHhhh
Q 009975 306 PDVRLNIISKLDQVNQ 321 (521)
Q Consensus 306 ~~vr~~a~~~l~~~~~ 321 (521)
..-|..++.+++.+.+
T Consensus 29 ~~ek~~~l~si~~lI~ 44 (107)
T PF08064_consen 29 IPEKKRALRSIEELIK 44 (107)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555555555
No 278
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=89.87 E-value=8.8 Score=30.65 Aligned_cols=86 Identities=21% Similarity=0.224 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh----hhhhhhHHHHHHhcCC-CC-hH--HHHHHHHHHHHHHHH
Q 009975 134 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQD-KS-WR--VRYMVANQLYELCEA 205 (521)
Q Consensus 134 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~d-~~-~~--vR~~~~~~l~~i~~~ 205 (521)
-.+....+.+-+...++.+...|+.++..+.++.++. .....++..+.+++.+ .. +. ||..+.+.+...+..
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 3455666666677788888888888888888887643 2233456666665543 22 22 888888888888888
Q ss_pred hCCCccccchHHHH
Q 009975 206 VGPEPTRMDLVPAY 219 (521)
Q Consensus 206 ~~~~~~~~~l~~~l 219 (521)
++.......+...+
T Consensus 120 f~~~~~~~~i~~~y 133 (140)
T PF00790_consen 120 FKSDPELSLIQDTY 133 (140)
T ss_dssp TTTSTTGHHHHHHH
T ss_pred HCCCCCchHHHHHH
Confidence 76554444343333
No 279
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=89.86 E-value=12 Score=32.27 Aligned_cols=64 Identities=13% Similarity=0.137 Sum_probs=35.7
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 009975 138 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 205 (521)
Q Consensus 138 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~ 205 (521)
.+.+.....+++.-.|..|+-+.....+. .....+..++...+.|+..-|++++.-.|.++++.
T Consensus 117 ~~~l~~W~~s~~~W~rR~ai~~~l~~~~~----~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 117 EPVMDEWSTDENFWLRRTAILHQLKYKEK----TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKT 180 (208)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHc----cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence 45555666666666666665443332222 12234555566666666666777666666666654
No 280
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=89.86 E-value=1.1 Score=36.73 Aligned_cols=57 Identities=19% Similarity=0.127 Sum_probs=27.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhc
Q 009975 381 DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP 438 (521)
Q Consensus 381 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~ 438 (521)
|+--++|.+|.+++..+........-...++..+..-+.| +..+|.-+...+..++.
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~ 94 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQ 94 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHH
Confidence 4444555555555555555433332223344444444555 55555555555555543
No 281
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=89.60 E-value=15 Score=32.95 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=78.2
Q ss_pred HHHHHHHHcCCCc-----HHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHh-hhcCcchHHHHHHHHHHHHhhcccChHH
Q 009975 371 LGALCMQWLQDKV-----YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE-MINNPHYLYRMTILRAISLLAPVMGSEI 444 (521)
Q Consensus 371 l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~~~~~~~r~~a~~~l~~l~~~~~~~~ 444 (521)
.+|.++..+.+++ ..++ .+++.++.+++..|...... ++..+.+ ..++.+.-+++ ++..+.+.+.++
T Consensus 112 ~LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~~~~La~-il~~ya~~~fr~~~dfl~~----v~~~l~~~f~P~- 184 (262)
T PF14225_consen 112 LLPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQGLPNLAR-ILSSYAKGRFRDKDDFLSQ----VVSYLREAFFPD- 184 (262)
T ss_pred HHHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCCCccHHH-HHHHHHhcCCCCHHHHHHH----HHHHHHHHhCch-
Confidence 5677777777766 3444 45678888886555332222 2222221 22332222222 222233323222
Q ss_pred HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH-HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 009975 445 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 517 (521)
Q Consensus 445 ~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~-~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~ 517 (521)
+...++.++..++.++.+.+|..+++.|..+.+..+.. .....++..+.+++..+-+ ..|.+.++.+...
T Consensus 185 ~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~---~eAL~VLd~~v~~ 255 (262)
T PF14225_consen 185 HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLW---MEALEVLDEIVTR 255 (262)
T ss_pred hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccH---HHHHHHHHHHHhh
Confidence 24567778899999999999999999999999876432 2445566666776655432 2455555544443
No 282
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=89.43 E-value=55 Score=39.21 Aligned_cols=207 Identities=14% Similarity=0.160 Sum_probs=109.8
Q ss_pred hcCCChHHHHHHHHHHHHhhhhhch------hhH--hhhHHHHHHHH-hcCCChHHHHHHHHHhHHHHhhhChhhhHHHH
Q 009975 301 LKDEFPDVRLNIISKLDQVNQVIGI------DLL--SQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 371 (521)
Q Consensus 301 l~d~~~~vr~~a~~~l~~~~~~~~~------~~~--~~~~~~~l~~~-~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 371 (521)
+...++++|..+......+...... -.+ ...++..+..+ ..|+++.+|......+. +.+......+..
T Consensus 490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~laQ~~~ 566 (2341)
T KOG0891|consen 490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLAQPDL 566 (2341)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhcCchh
Confidence 3455677777776666555433221 001 23333333332 35666777766655544 111122223445
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHh--------hhcCcchHHHHHHHHHHHHhhc--ccC
Q 009975 372 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE--------MINNPHYLYRMTILRAISLLAP--VMG 441 (521)
Q Consensus 372 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~--------~l~~~~~~~r~~a~~~l~~l~~--~~~ 441 (521)
....+..+.|..-..+.++...++.++..-. ..++|.+.. +.-+...++......-+..+.. ...
T Consensus 567 lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-----a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~ 641 (2341)
T KOG0891|consen 567 LRLLFIALHDENFAIQELATVIIGRLSSYNP-----AYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVL 641 (2341)
T ss_pred HHHHHHHhhhhhhhhHHhHHhhccccccccH-----HHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHH
Confidence 5566677788888888888777776654211 223333332 1112222222222222222221 011
Q ss_pred hHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch--HHHHhhHHHHHHHhcCC-CCccHHHHHHHHHHHHH
Q 009975 442 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--SMVEKTIRPCLVELTED-PDVDVRFFATQAIQSID 515 (521)
Q Consensus 442 ~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~--~~~~~~~~~~l~~l~~D-~~~~vr~~a~~al~~l~ 515 (521)
...+...++-.++..+.|+...+-.++..+++.++...|. ..+.....+.+.+...| ...--|..+.+++..+.
T Consensus 642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~ 718 (2341)
T KOG0891|consen 642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLE 718 (2341)
T ss_pred HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence 1223455667778888999999999999999999988772 22333555555554444 34455666777766654
No 283
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=89.03 E-value=13 Score=31.61 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=40.6
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccc
Q 009975 217 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 283 (521)
Q Consensus 217 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~ 283 (521)
+.+.....+++.-+|.++...+...... +...+.++..+..+..|++..||.+...++..++..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 6666777777777776666655554433 122345566666667777777777777777776654
No 284
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=88.86 E-value=20 Score=33.48 Aligned_cols=183 Identities=10% Similarity=0.073 Sum_probs=111.3
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhh-Chh--hhH-------HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 009975 330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVG--FFD-------DKLGALCMQWLQDKVYSIRDAAANNLKRLAE 399 (521)
Q Consensus 330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~-~~~--~~~-------~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 399 (521)
..+++.+...+..-++..|..+...+..+...- |.. ... +.++..+....++++...- +...+...++
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~--~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALN--CGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHH--HHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccch--HHHHHHHHHh
Confidence 567777777777777888888888777776553 221 111 3455566666665554331 1111222111
Q ss_pred H--hCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhccc---ChHHH---hhcHHHHHHhhcCCCCchHHHHHHHH
Q 009975 400 E--FGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM---GSEIT---CSRLLPVVINASKDRVPNIKFNVAKV 471 (521)
Q Consensus 400 ~--~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~---~~~~~---~~~il~~l~~~l~d~~~~VR~~a~~~ 471 (521)
. +.........+-.+.+....++..+-..|..++..+.... ..+++ .+.+......++..++.-.|..+++.
T Consensus 153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 0 0001112344455667788889998888888888876432 22222 34566788889999999999999999
Q ss_pred HHHHHhhhchHH-----H-HhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 009975 472 LQSLIPIVDQSM-----V-EKTIRPCLVELTEDPDVDVRFFATQAIQSI 514 (521)
Q Consensus 472 l~~~~~~~~~~~-----~-~~~~~~~l~~l~~D~~~~vr~~a~~al~~l 514 (521)
|+.+...-..-. + ...-+-.+-.++.|+..+||..|-+.++-.
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvF 281 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVF 281 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence 999986432211 1 144566666789999999999999888754
No 285
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=88.41 E-value=31 Score=34.98 Aligned_cols=297 Identities=14% Similarity=0.129 Sum_probs=139.9
Q ss_pred hHHHHHHhcCCC--hHHHHHHHHHhHHHHHhhhCH----H-------HHHHhhhHHHHHhccC-CcHHHHHHHHHHHHcc
Q 009975 215 LVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILNP----E-------LAIQHILPCVKELSSD-SSQHVRSALASVIMGM 280 (521)
Q Consensus 215 l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~----~-------~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~i 280 (521)
++..+-++..+. +.+++.+.++.|..+..-+.. + .+.+.+.|...++... ++|.+-.-+..+ +
T Consensus 130 Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~khw~~afPL~t~---l 206 (552)
T PF14222_consen 130 FMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSKPKHWNVAFPLVTT---L 206 (552)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhCcchhhhHHHHHHH---H
Confidence 444444444333 567888888888776553311 1 2234455565665544 445442222222 2
Q ss_pred ccccChHHHHHhHHH-HHHH---hhcCCChHHHHHHHHHHHHhhhh-h---c---hhhHhhhHHHHHHHHh--cCCChHH
Q 009975 281 APLLGKDATIEQLLP-IFLS---LLKDEFPDVRLNIISKLDQVNQV-I---G---IDLLSQSLLPAIVELA--EDRHWRV 347 (521)
Q Consensus 281 ~~~~~~~~~~~~l~~-~l~~---~l~d~~~~vr~~a~~~l~~~~~~-~---~---~~~~~~~~~~~l~~~~--~~~~~~v 347 (521)
.=.-+++.+.+.+.+ .+.. -++|. ..|..++.++.++.-. + . .......+-+.+..++ +.++|-.
T Consensus 207 LCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~~kk~~i~ 284 (552)
T PF14222_consen 207 LCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPKGKKGWIP 284 (552)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccCCCCcccC
Confidence 212255666666663 5443 35555 8899999999887543 2 0 1111122222222222 2334544
Q ss_pred HH-HHHHHhHHHHhhhChhhh----HHHHHHHHHHHcC-----CCcHHHHHHHHHHHHHHHHHhCHHHHHh---------
Q 009975 348 RL-AIIEYIPLLASQLGVGFF----DDKLGALCMQWLQ-----DKVYSIRDAAANNLKRLAEEFGPEWAMQ--------- 408 (521)
Q Consensus 348 r~-~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~--------- 408 (521)
+. ..++.+-.+...+|.... ..-+.|++..-.. .-+++=-.-++.++-.+...+.......
T Consensus 285 ~D~~~~~~lv~ii~~I~~~~~df~~~~iI~~LL~~~~~~s~~~~l~pERm~IgIRA~l~Il~~~e~~e~p~~p~~~~~~~ 364 (552)
T PF14222_consen 285 RDPEPLNPLVQIIRFIGYKHLDFAFRNIIFPLLNVSFNGSSLENLNPERMIIGIRAFLAILSDLEQKEKPPPPPPTSDPS 364 (552)
T ss_pred CChhhhhhHHHHHHhHhhhCcchHHHHHHHHHHccccccccccccChhHHHHHHHHHHHHHHhhccCCCCCCCCCcCCCC
Confidence 55 455555555555554322 3334444432221 2234444456666666665542211000
Q ss_pred ------------hhHHHHHhhhcCcchHHHHHHHHHHHHhhc----ccChHHHhhcH----------HHHHHhhcCCCCc
Q 009975 409 ------------HITPQVLEMINNPHYLYRMTILRAISLLAP----VMGSEITCSRL----------LPVVINASKDRVP 462 (521)
Q Consensus 409 ------------~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~----~~~~~~~~~~i----------l~~l~~~l~d~~~ 462 (521)
..++ .....++.....-.....+++.+.. .+|.....+.- -.+-+..-.|..
T Consensus 365 ~~~~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~l~~il~~cD~~~G~~~~~~~~~~~~~~~t~~~~f~f~~~~d~~- 442 (552)
T PF14222_consen 365 GNTLRVKYTPSNEYLS-NEIAKNSGIREYYEEFCRALGKILRLCDNTFGSQLWLDEKQSSSKPKTPFSSFSFGRNDDMV- 442 (552)
T ss_pred CcccccccCccccccc-chhhccccHHHHHHHHHHHHHHHHHHHHHHhchhhccCcccccCCCCCCccccccccccccc-
Confidence 0111 0001111112222344445555543 33432211100 001111111211
Q ss_pred hHHHHHHHHHHHHHhhh----chHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 009975 463 NIKFNVAKVLQSLIPIV----DQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 518 (521)
Q Consensus 463 ~VR~~a~~~l~~~~~~~----~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~ 518 (521)
.-.......+....+.. +...-...+...|.+..-..|++||..|..+|+.+....
T Consensus 443 ~~~~~~~~Lf~t~i~aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~ 502 (552)
T PF14222_consen 443 TDQKPQLDLFRTCIQAIPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDK 502 (552)
T ss_pred ccccchhHHHHHHHHHccccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcC
Confidence 11133334444444433 223334778888999889999999999999999988654
No 286
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=88.30 E-value=17 Score=31.77 Aligned_cols=68 Identities=12% Similarity=0.193 Sum_probs=46.1
Q ss_pred HhHHHHHHHhhcCC-CCcchhhhhhhhhhhcCCCChHH-----HHHHHHHHHHhcCCCChHHHHHHHHhHHHHH
Q 009975 58 DWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDIL-----KTELRSIYTQLCQDDMPMVRRSAASNLGKFA 125 (521)
Q Consensus 58 ~~l~p~i~~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~-----~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~ 125 (521)
-++.|++.....+. ....|.++++.++++.+..+.++ ..+++|+........+..-+..|...++.+.
T Consensus 123 lylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 123 LYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKIL 196 (293)
T ss_pred hhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 46667775544433 45778999999999998877663 3556677777666666666666666666654
No 287
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=88.03 E-value=24 Score=33.40 Aligned_cols=69 Identities=20% Similarity=0.245 Sum_probs=49.0
Q ss_pred cHHHHHHhhcCCCC-chHHHHHHHHHHHHHhhhchH--HHH-hhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975 448 RLLPVVINASKDRV-PNIKFNVAKVLQSLIPIVDQS--MVE-KTIRPCLVELTEDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 448 ~il~~l~~~l~d~~-~~VR~~a~~~l~~~~~~~~~~--~~~-~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~ 516 (521)
.++..++.+|+..+ |.+=.-|+.=++..+.+++.- .+. -.....+-++++.+|++||..|..|++.+..
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 46677777776554 556667788888888776432 222 2245566678999999999999999998864
No 288
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=87.94 E-value=51 Score=36.99 Aligned_cols=72 Identities=17% Similarity=0.145 Sum_probs=50.1
Q ss_pred HhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchh---hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhh
Q 009975 291 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 362 (521)
Q Consensus 291 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~ 362 (521)
..++..+++.|+....-|..++|-+|-.+.-.-..+ .+....++.+.+++.+++..+-+..+.++-.+..+-
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 356788888999888888777777776665433322 234567888999998888777776666666665443
No 289
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=87.90 E-value=11 Score=33.67 Aligned_cols=131 Identities=18% Similarity=0.256 Sum_probs=66.9
Q ss_pred hcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCC------ChHHHHHHHHHhHHHHhhhC--hhhhHHHHH
Q 009975 301 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR------HWRVRLAIIEYIPLLASQLG--VGFFDDKLG 372 (521)
Q Consensus 301 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~ 372 (521)
+.+.+.+.|.+|++++..=. |. ..++|.|...+.+. +-..-..++.....+.+.-. -+.+...++
T Consensus 207 ~dEs~~~~r~aAl~sLr~ds---Gl----hQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlm 279 (450)
T COG5095 207 LDESDEQTRDAALESLRNDS---GL----HQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLM 279 (450)
T ss_pred HHHHHHHHHHHHHHHhccCc---cH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHH
Confidence 44555667777766654321 11 34455554444321 11222222222223322211 134556678
Q ss_pred HHHHHHcC------C----CcHHHHHHHHHHHHHHHHHhCHHHH--HhhhHHHHHhhhcC--cchHHHHHHHHHHHHhhc
Q 009975 373 ALCMQWLQ------D----KVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINN--PHYLYRMTILRAISLLAP 438 (521)
Q Consensus 373 ~~l~~~l~------d----~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~l~~ 438 (521)
|.++.++- + ....+|..|+..++.++..++.... ...+...+.+..-| .-+.....|+..++.+..
T Consensus 280 PSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~k 359 (450)
T COG5095 280 PSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSK 359 (450)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhch
Confidence 87776641 2 2346999999999999988876432 23333333333223 235556677777666654
No 290
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=87.87 E-value=9 Score=29.28 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=27.7
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhh
Q 009975 330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 366 (521)
Q Consensus 330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~ 366 (521)
..++..+.+-+++++|++...++..+..+.+++|..+
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f 72 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF 72 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH
Confidence 4556666666677788888888888888888887754
No 291
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.78 E-value=30 Score=34.15 Aligned_cols=313 Identities=14% Similarity=0.081 Sum_probs=150.9
Q ss_pred HHHHHHHHhcCCC---ChHHHHHHHHhHHHHHH--hhCchhhHH--HHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh
Q 009975 97 ELRSIYTQLCQDD---MPMVRRSAASNLGKFAA--TVEPAHLKT--DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 169 (521)
Q Consensus 97 ~l~~~l~~l~~~~---~~~vr~~a~~~l~~l~~--~~~~~~~~~--~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 169 (521)
.++..+..++++. +..+-..+.++++...+ .++.+.+.. -++.+....++ ....-..|.+++..+......
T Consensus 153 ~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~--~~~lhe~At~cic~ll~~~~~ 230 (559)
T KOG2081|consen 153 KVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLS--DDELHEEATECICALLYCSLD 230 (559)
T ss_pred HHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcc--cchhhHHHHHHHHHHHHHhhh
Confidence 3444444444433 24566777777777665 344333322 34455555555 333455566666665544322
Q ss_pred h-hh---hh------hhHHH-HHHhcCCCChHHHHHHHHHHHHHHHHhCCC--ccccchHHH---HHHhcCCChHHHHHH
Q 009975 170 Q-DC---VA------HILPV-IVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPA---YVRLLRDNEAEVRIA 233 (521)
Q Consensus 170 ~-~~---~~------~l~~~-l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~--~~~~~l~~~---l~~~l~d~~~~vr~~ 233 (521)
- .. .. .+++. +.......+.+-+.+.++.+..+++.+-.. ..+++.++. +.-....++++|-++
T Consensus 231 ~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~ 310 (559)
T KOG2081|consen 231 RSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEA 310 (559)
T ss_pred hhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhh
Confidence 1 11 01 12222 222334566677777888887777654211 011233333 333445666677777
Q ss_pred HHHhHHHHHhhhCH---HHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhc---CCChH
Q 009975 234 AAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK---DEFPD 307 (521)
Q Consensus 234 a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~---d~~~~ 307 (521)
.......+.+.+-. ......+-|++.+++ .++..=+..-. ....+. ++..+
T Consensus 311 SF~fW~~lse~l~~~~~~~~~~~frpy~~rLv------------s~l~~h~qlp~-----------~~~~l~Ee~~~f~~ 367 (559)
T KOG2081|consen 311 SFNFWYSLSEELTLTDDDEALGIFRPYFLRLV------------SLLKRHVQLPP-----------DQFDLPEEESEFFE 367 (559)
T ss_pred hHHhhhhhHHHHhccccHHHHHHhHHHHHHHH------------HHHHHHccCCC-----------ccccCccchhHHHH
Confidence 66666665554311 111111222222221 11111111000 000111 22345
Q ss_pred HHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCcHH
Q 009975 308 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYS 385 (521)
Q Consensus 308 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~ 385 (521)
.|......+..++-.+|.+.-.+.+.-.+.+ +...|..-++++..+..+++.+.++ ...+.++..+.++ +....
T Consensus 368 fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nl--p~Q~~ 443 (559)
T KOG2081|consen 368 FRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNL--PEQAP 443 (559)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCC--ccchh
Confidence 6666777777776666654322222222222 5677888888888888888877653 3344444444332 22333
Q ss_pred HHHHHHHHHHHHHHHhCHHHH-HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhccc
Q 009975 386 IRDAAANNLKRLAEEFGPEWA-MQHITPQVLEMINNPHYLYRMTILRAISLLAPVM 440 (521)
Q Consensus 386 vr~~a~~~l~~l~~~~~~~~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~ 440 (521)
+|..++..+|.+.+.+..... .+.+...+...+.... ...++..++..+...+
T Consensus 444 ~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c 497 (559)
T KOG2081|consen 444 LRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSAC 497 (559)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHH
Confidence 888888888888776654322 2333444444444443 3444444555554433
No 292
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=87.76 E-value=8.8 Score=30.64 Aligned_cols=74 Identities=9% Similarity=0.069 Sum_probs=52.5
Q ss_pred hhhHHHHHhhhc-CcchHHHHHHHHHHHHhhcccChHHH----hhcHHHH-HHhhcCC---CCchHHHHHHHHHHHHHhh
Q 009975 408 QHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPV-VINASKD---RVPNIKFNVAKVLQSLIPI 478 (521)
Q Consensus 408 ~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~-l~~~l~d---~~~~VR~~a~~~l~~~~~~ 478 (521)
...+..|.+.++ +++.++...|+..+..+.+.+|..+. ...++.. +.+.+.+ +...||...+..+......
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 445566666665 46777888888888888888887653 2567765 6676653 3458899999888888877
Q ss_pred hch
Q 009975 479 VDQ 481 (521)
Q Consensus 479 ~~~ 481 (521)
+..
T Consensus 117 f~~ 119 (141)
T cd03565 117 FRG 119 (141)
T ss_pred hCC
Confidence 654
No 293
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=87.62 E-value=33 Score=34.46 Aligned_cols=150 Identities=7% Similarity=0.066 Sum_probs=90.2
Q ss_pred hHHHHHHHHhcCC--ChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHHHHH
Q 009975 331 SLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW--------LQDKVYSIRDAAANNLKRLAEE 400 (521)
Q Consensus 331 ~~~~~l~~~~~~~--~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~--------l~d~~~~vr~~a~~~l~~l~~~ 400 (521)
.++..+...+.+. +|..-...+.+++++...++...-...++..+..+ -+|+..-|-...+..+|..-.-
T Consensus 481 ~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRF 560 (1053)
T COG5101 481 YMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRF 560 (1053)
T ss_pred HHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHH
Confidence 3444444444443 56666778888888888877653333333333222 2454444444444444443333
Q ss_pred hCHHH-HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH----------HhhcHHHHHHhhcCCCCchHHHHHH
Q 009975 401 FGPEW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----------TCSRLLPVVINASKDRVPNIKFNVA 469 (521)
Q Consensus 401 ~~~~~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----------~~~~il~~l~~~l~d~~~~VR~~a~ 469 (521)
+...| +...++..+.+++...+..++..||..+-.+.+.+...+ |..+++..+-+.-.|-.+.-+...-
T Consensus 561 Lkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfY 640 (1053)
T COG5101 561 LKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFY 640 (1053)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHH
Confidence 32222 456788888888888899999999999999998765433 3334444444445666666666777
Q ss_pred HHHHHHHhhhc
Q 009975 470 KVLQSLIPIVD 480 (521)
Q Consensus 470 ~~l~~~~~~~~ 480 (521)
++++.+....+
T Consensus 641 eAcg~vIse~p 651 (1053)
T COG5101 641 EACGMVISEVP 651 (1053)
T ss_pred HHHhHHHhccc
Confidence 77777766543
No 294
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.51 E-value=38 Score=35.07 Aligned_cols=230 Identities=15% Similarity=0.184 Sum_probs=125.2
Q ss_pred CcchhhhhhhhhhhcCCCChHHHHHHHHHHHH---hc-----CCCChHHHHHH-HHhHHHHHHhhCch-----hhHHHHH
Q 009975 73 FTARVSACGLFHIAYPSAPDILKTELRSIYTQ---LC-----QDDMPMVRRSA-ASNLGKFAATVEPA-----HLKTDIM 138 (521)
Q Consensus 73 ~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~---l~-----~~~~~~vr~~a-~~~l~~l~~~~~~~-----~~~~~l~ 138 (521)
+..|-.+-.++-.++..-++-....++..+.+ +. ++-+..+++-| -.+.|.-+..+... -..+.++
T Consensus 411 y~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~ll 490 (978)
T KOG1993|consen 411 YNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALL 490 (978)
T ss_pred eccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhC
Confidence 45666666666665544444444555555532 22 22233344433 34444433333321 1334555
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHhCCCccccchHH
Q 009975 139 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEPTRMDLVP 217 (521)
Q Consensus 139 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~-~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~ 217 (521)
|-+. -..++...+|+-.+-.++.=.+.--+.+.++.+...+..+++|. +-.||-++++.+.-..+-+. ...+.+.|
T Consensus 491 pEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~n--F~~dsFlp 567 (978)
T KOG1993|consen 491 PELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWN--FSEDSFLP 567 (978)
T ss_pred HHhh-hcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhcc--CChhhhhh
Confidence 5544 12233445677777777776664434456666777788888887 67799999999887765432 11222333
Q ss_pred HH-------HHhcCC-ChHHHHHHHHHhHHHHHhhhCHH--HHHHh---hhHHHHHhccCCcHHHHHHHHHHHHcccccc
Q 009975 218 AY-------VRLLRD-NEAEVRIAAAGKVTKFCRILNPE--LAIQH---ILPCVKELSSDSSQHVRSALASVIMGMAPLL 284 (521)
Q Consensus 218 ~l-------~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~--~~~~~---~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~ 284 (521)
.+ .++++. ++-+.|...+..++.+....++. +.... ++|.+-+-. .+++-.|.+.+..+.++...+
T Consensus 568 ~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s-~~e~lLr~alL~~L~~lV~al 646 (978)
T KOG1993|consen 568 YLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEES-EEEPLLRCALLATLRNLVNAL 646 (978)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh-ccCcHHHHHHHHHHHHHHHHh
Confidence 33 233332 23456667777777766655432 11122 333333322 356678999999999998888
Q ss_pred ChHH--HHHhHHHHHHHhhcCCCh
Q 009975 285 GKDA--TIEQLLPIFLSLLKDEFP 306 (521)
Q Consensus 285 ~~~~--~~~~l~~~l~~~l~d~~~ 306 (521)
|.+. ....+.|.+.....-++|
T Consensus 647 g~qS~~~~~fL~pVIel~~D~~sP 670 (978)
T KOG1993|consen 647 GAQSFEFYPFLYPVIELSTDPSSP 670 (978)
T ss_pred ccCCccchHHHHHHHHHhcCCCCC
Confidence 7643 344566665554443333
No 295
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=86.76 E-value=13 Score=28.75 Aligned_cols=70 Identities=20% Similarity=0.272 Sum_probs=48.6
Q ss_pred hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHH-----hhHHHHHHHhc--------CCCCccHHHHHHHHHH
Q 009975 446 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE-----KTIRPCLVELT--------EDPDVDVRFFATQAIQ 512 (521)
Q Consensus 446 ~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~-----~~~~~~l~~l~--------~D~~~~vr~~a~~al~ 512 (521)
...++..+.+-|++..+.|+..++++|..++....+.+.. ..++..+.... .++...||..|.+++.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 4578889999999999999999999999988875433221 22233333332 2356789999988887
Q ss_pred HHH
Q 009975 513 SID 515 (521)
Q Consensus 513 ~l~ 515 (521)
.|-
T Consensus 116 ~if 118 (122)
T cd03572 116 AIF 118 (122)
T ss_pred HHh
Confidence 653
No 296
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=86.70 E-value=30 Score=33.00 Aligned_cols=146 Identities=12% Similarity=0.175 Sum_probs=89.3
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC------HHHHHHhhhHHHHH-hccCCcHHHHHHHHHHHHccccccC
Q 009975 213 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN------PELAIQHILPCVKE-LSSDSSQHVRSALASVIMGMAPLLG 285 (521)
Q Consensus 213 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~~~~~l~~-~~~d~~~~vr~~~~~~l~~i~~~~~ 285 (521)
+.++..+...+.+++......+.-+++.++..-. ...+.+.++..+.+ .-.|.+-+++++++.++..++--..
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 4478888888888888888888888888877432 23445556666544 4567788899999999998764332
Q ss_pred h-HHH-HHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhh-------hchhhHhhhHHHHHHHHhcCCChH-HHHHHHHHh
Q 009975 286 K-DAT-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV-------IGIDLLSQSLLPAIVELAEDRHWR-VRLAIIEYI 355 (521)
Q Consensus 286 ~-~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~-vr~~~~~~l 355 (521)
. ..+ ..-+...++..++-..|.|...-+-++..+... ++.. ..++..+....+++++. |-...-..+
T Consensus 394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn---~~l~ekLv~Wsks~D~aGv~gESnRll 470 (604)
T KOG4500|consen 394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKN---PELFEKLVDWSKSPDFAGVAGESNRLL 470 (604)
T ss_pred chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcC---HHHHHHHHHhhhCCccchhhhhhhHHH
Confidence 2 221 223555677777777777776665555444321 2211 45566666666666543 333333333
Q ss_pred HHHHhh
Q 009975 356 PLLASQ 361 (521)
Q Consensus 356 ~~l~~~ 361 (521)
..+.++
T Consensus 471 ~~lIkH 476 (604)
T KOG4500|consen 471 LGLIKH 476 (604)
T ss_pred HHHHHh
Confidence 344433
No 297
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=86.55 E-value=30 Score=32.85 Aligned_cols=153 Identities=14% Similarity=0.144 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHH
Q 009975 39 KAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 118 (521)
Q Consensus 39 ~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~ 118 (521)
+++..+..+..+..-++..++.+-++..+..++.. |.....- .. +. .+......+..++.+.++.+-..+.
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~s--r~~lf~~---~a-~~---~k~~~~~~fl~ll~r~d~~iv~~~~ 135 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRS--RVDLFHD---YA-HK---LKRTEWLSFLNLLNRQDTFIVEMSF 135 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCch--HHHHHHH---HH-Hh---hhccchHHHHHHHhcCChHHHHHHH
Confidence 45566677777777777777888888887776543 2222111 11 11 1223345666777788888888777
Q ss_pred HhHHHHHHhhCc---hhhHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHhhhcCh------hhhhhhhHHHHHHhcCCCC
Q 009975 119 SNLGKFAATVEP---AHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEP------QDCVAHILPVIVNFSQDKS 188 (521)
Q Consensus 119 ~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~~d~~ 188 (521)
..+..++..... ....+.....+...+++ .+...+..++++|..+...-.- ....+.+++.+. ....+
T Consensus 136 ~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~--s~~~~ 213 (442)
T KOG2759|consen 136 RILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILA--STKCG 213 (442)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHh--ccCcc
Confidence 777766654332 11234455566666655 5566677788888887654110 011122333333 34455
Q ss_pred hHHHHHHHHHHHHH
Q 009975 189 WRVRYMVANQLYEL 202 (521)
Q Consensus 189 ~~vR~~~~~~l~~i 202 (521)
..+.+..+-++-.+
T Consensus 214 ~QlQYqsifciWlL 227 (442)
T KOG2759|consen 214 FQLQYQSIFCIWLL 227 (442)
T ss_pred hhHHHHHHHHHHHh
Confidence 66777666666544
No 298
>PF05536 Neurochondrin: Neurochondrin
Probab=86.43 E-value=40 Score=34.17 Aligned_cols=151 Identities=11% Similarity=0.133 Sum_probs=79.1
Q ss_pred HHHHHHHHhhcCCCh-hHHHHHHHHHHHHhhhcCh-hh-hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcc-
Q 009975 136 DIMSIFEDLTQDDQD-SVRLLAVEGCAALGKLLEP-QD-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT- 211 (521)
Q Consensus 136 ~l~~~l~~l~~d~~~-~vr~~a~~~l~~l~~~~~~-~~-~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~- 211 (521)
.-+|.+.+.+..... .+-..++++|..++..-.. +. .....++.+.+...+ .+.....+...+..+....+.+..
T Consensus 98 ~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~ 176 (543)
T PF05536_consen 98 SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWA 176 (543)
T ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhh
Confidence 345566665554444 6677777777777733111 11 122244444444433 444566666666666554442211
Q ss_pred -----ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC--------HHHHHHhhhHHHHHhccC-CcHHHHHHHHHHH
Q 009975 212 -----RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--------PELAIQHILPCVKELSSD-SSQHVRSALASVI 277 (521)
Q Consensus 212 -----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--------~~~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l 277 (521)
...+++.+.+.+.......+...++.|+.+....+ ...+...+...+..++.+ ..+.-|..+....
T Consensus 177 ~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~La 256 (543)
T PF05536_consen 177 EDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLA 256 (543)
T ss_pred hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 11344444444444444555666666666655542 123445556666665544 3455667766666
Q ss_pred HccccccChH
Q 009975 278 MGMAPLLGKD 287 (521)
Q Consensus 278 ~~i~~~~~~~ 287 (521)
..+.+.+|.+
T Consensus 257 a~Ll~~~G~~ 266 (543)
T PF05536_consen 257 ASLLDLLGPE 266 (543)
T ss_pred HHHHHHhChH
Confidence 6666666543
No 299
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.10 E-value=35 Score=33.25 Aligned_cols=330 Identities=11% Similarity=0.062 Sum_probs=153.9
Q ss_pred hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---
Q 009975 172 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--- 248 (521)
Q Consensus 172 ~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--- 248 (521)
+..++..++...+.--.+..|...+++|.-+-. ..-....+++..|..++.-.+...|..+...+......++..
T Consensus 17 FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrN--k~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn 94 (616)
T KOG2229|consen 17 FPSELKDLLRTNHTVLPPELREKIVKALILLRN--KNLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKN 94 (616)
T ss_pred hhHHHHHHHHhccccCCHHHHHHHHHHHHHHhc--cCcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccc
Confidence 344566667766666778899999988864432 223344678888888888777788888877776666644322
Q ss_pred -HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHH-HhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch-
Q 009975 249 -LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI- 325 (521)
Q Consensus 249 -~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~- 325 (521)
.....+...+..++.+++.. ++.+++..++....+..+. ..-+.++...+-+.++.|..+++..+-.--..-..
T Consensus 95 ~klnkslq~~~fsml~~~d~~---~ak~a~~~~~eL~kr~iW~d~~tV~i~~~acf~~~~ki~vs~l~FfL~~D~~dee~ 171 (616)
T KOG2229|consen 95 DKLNKSLQAFMFSMLDQSDST---AAKMALDTMIELYKRNIWNDSKTVNIITTACFSKVPKILVSGLRFFLGADNEDEED 171 (616)
T ss_pred chHHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHHHhcccccchhHHHHHHHHhccCcHHHHhhhHHhccCCcccccc
Confidence 12222334445556665543 1222222222211111110 01122222222233344443333322110000000
Q ss_pred --h---hHh-hhHHHHHHHHhcCCChHHHHHHHHH------------------hHHHHhhhChhhhHHHHHHHHHHHcCC
Q 009975 326 --D---LLS-QSLLPAIVELAEDRHWRVRLAIIEY------------------IPLLASQLGVGFFDDKLGALCMQWLQD 381 (521)
Q Consensus 326 --~---~~~-~~~~~~l~~~~~~~~~~vr~~~~~~------------------l~~l~~~~~~~~~~~~l~~~l~~~l~d 381 (521)
+ ... ..+-..+.+..+.....-......+ ++.+--.-.++.|.+.+.+.+... .
T Consensus 172 dsd~~~d~dg~~~~~l~~~~vnkktkkr~~kl~~a~k~vkkkqk~~~~~~t~nfs~i~ll~DpQ~fAEkLfk~~~~~--~ 249 (616)
T KOG2229|consen 172 DSDSESDEDGPDADALLHQRVNKKTKKRQKKLLRAAKSVKKKQKKKKNAPTFNFSAIHLLHDPQGFAEKLFKQLLAC--K 249 (616)
T ss_pred ccccccccccccHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhcCCCCCCCCccHHHhhcChhHHHHHHHHHHhhh--h
Confidence 0 000 0011111111111111101111111 111111123344555565555444 3
Q ss_pred CcHHHHHHHHHHHHHHHHHhCHHH-HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCC
Q 009975 382 KVYSIRDAAANNLKRLAEEFGPEW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR 460 (521)
Q Consensus 382 ~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~ 460 (521)
...++|...+..+..++ |... +.-.+.|.|..++......+.+....+....-+...++.+.+.+....-....|.
T Consensus 250 er~E~klm~~~lisRli---G~HkL~l~~fY~fl~~yl~phqrDvTqIl~~aaQa~Hd~VP~d~iEpl~k~Ian~FVtD~ 326 (616)
T KOG2229|consen 250 ERFEVKLMLMKLISRLI---GIHKLFLFGFYPFLQRYLQPHQRDVTQILAAAAQASHDLVPPDIIEPLLKTIANNFVTDE 326 (616)
T ss_pred hhHHHHHHHHHHHHHHh---hhhHHHHhhhHHHHHHHcCcchhhHHHHHHHHHHhccCCCChHHhhHHHHHHHHHhcccC
Confidence 44567777666666655 4332 2345778888888887766655444444433333344433333333334445564
Q ss_pred -CchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 009975 461 -VPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQS 513 (521)
Q Consensus 461 -~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~ 513 (521)
.+.|-....+++..++...+... .+.++.-|..+....+..| ..|++++-.
T Consensus 327 ~spEv~~vgiN~iREic~RvplaM-teeLLqDLa~YK~sk~K~V-~maarSLI~ 378 (616)
T KOG2229|consen 327 NSPEVMAVGINAIREICERVPLAM-TEELLQDLASYKTSKKKVV-MMAARSLIA 378 (616)
T ss_pred CCcceeehhhhHHHHHHhhcchhh-cHHHHHHHHHHhHHHHHHH-HHHHHHHHH
Confidence 56677778888888887654322 2444444444444444444 444444443
No 300
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=86.10 E-value=45 Score=34.42 Aligned_cols=146 Identities=14% Similarity=0.125 Sum_probs=92.9
Q ss_pred HHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHhCH-------HH-HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcc
Q 009975 369 DKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGP-------EW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV 439 (521)
Q Consensus 369 ~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~-------~~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~ 439 (521)
+.++...+.++. ..+..+-++++.+|..+....+. .. -.+..+|.+++++...+.++-.+++.++..+...
T Consensus 517 p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 517 PSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD 596 (717)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence 445555455544 35677888888888887643321 12 3577889999999999999999999999999864
Q ss_pred cCh-HHHhhcHHHHHHhhcCCCCc------hHHHHHHHHHHHHHh-hhc--hHHHHhhHHHHHHHhcC-CCCccHHHHHH
Q 009975 440 MGS-EITCSRLLPVVINASKDRVP------NIKFNVAKVLQSLIP-IVD--QSMVEKTIRPCLVELTE-DPDVDVRFFAT 508 (521)
Q Consensus 440 ~~~-~~~~~~il~~l~~~l~d~~~------~VR~~a~~~l~~~~~-~~~--~~~~~~~~~~~l~~l~~-D~~~~vr~~a~ 508 (521)
.-. +.+-.+.+|.++..|-+..+ ++-.+++.+|..++. ... .+.+...=++.|..+.. -.++.+-..|.
T Consensus 597 ~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs 676 (717)
T KOG1048|consen 597 IRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAAS 676 (717)
T ss_pred chhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHH
Confidence 433 33457788999999877644 555577788877763 221 22333333444444332 23435555555
Q ss_pred HHHHHH
Q 009975 509 QAIQSI 514 (521)
Q Consensus 509 ~al~~l 514 (521)
..+..|
T Consensus 677 ~vL~~l 682 (717)
T KOG1048|consen 677 SVLDVL 682 (717)
T ss_pred HHHHHH
Confidence 555544
No 301
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=86.04 E-value=13 Score=30.67 Aligned_cols=76 Identities=16% Similarity=0.037 Sum_probs=52.4
Q ss_pred CCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHH--HhhhHHHHHhhh
Q 009975 342 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMI 418 (521)
Q Consensus 342 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l 418 (521)
|..-.+|.++.+++..+...+....-...+...+...++| +.++|.-+...+..++........ .+.+.+.+...+
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence 4456789999999888887766554455668888889999 999999999999888754322211 245666666554
No 302
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.96 E-value=51 Score=35.00 Aligned_cols=90 Identities=13% Similarity=0.146 Sum_probs=63.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh--hh---HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHH-
Q 009975 331 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE- 404 (521)
Q Consensus 331 ~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~- 404 (521)
.++..-..++.+++-++|..+++.+..-...+... .+ .....|.++..+.+.++-+-..|+.++..++...|.=
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv 882 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFV 882 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHH
Confidence 34444445778999999999999887665554331 11 2234667778888999999999999999998877641
Q ss_pred --HHHhhhHHHHHhhhcC
Q 009975 405 --WAMQHITPQVLEMINN 420 (521)
Q Consensus 405 --~~~~~l~~~l~~~l~~ 420 (521)
.+.+.++|.+..++.+
T Consensus 883 ~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 883 ASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 2346788888766554
No 303
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=85.90 E-value=46 Score=34.36 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=77.9
Q ss_pred hhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHH
Q 009975 173 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ 252 (521)
Q Consensus 173 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 252 (521)
...++..+..+..|+-..||..+...+..+...-+.. ...++..+++-+.|++..+-.-|...|..+....+... -
T Consensus 302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq--E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK--~ 377 (988)
T KOG2038|consen 302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ--ENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMK--I 377 (988)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH--HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcce--e
Confidence 3456778888999999999999999887776533322 35688999999999998888888888877766554321 1
Q ss_pred hhhHHHHHhccC--CcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhh
Q 009975 253 HILPCVKELSSD--SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL 301 (521)
Q Consensus 253 ~~~~~l~~~~~d--~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l 301 (521)
.++..+..++-. -+.+....++..+.++.-..........++.+++.++
T Consensus 378 Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~lF 428 (988)
T KOG2038|consen 378 VVIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSLF 428 (988)
T ss_pred ehHHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHHH
Confidence 123333333322 2333444455555555433333334555666555444
No 304
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=85.89 E-value=8 Score=29.06 Aligned_cols=72 Identities=17% Similarity=0.349 Sum_probs=49.6
Q ss_pred HHHHHhhhcCc----chHHHHHHHHHHHHhhcccChHH--HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHH
Q 009975 411 TPQVLEMINNP----HYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV 484 (521)
Q Consensus 411 ~~~l~~~l~~~----~~~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~ 484 (521)
+..+.+.++|. ...-|..++.+++.+.+..|... +.++++-.+...++ .++.|..+++++..+...++.+..
T Consensus 13 l~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l 90 (107)
T smart00802 13 LAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEEL 90 (107)
T ss_pred HHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHH
Confidence 34444445553 34568889999999998666432 34555555555665 456999999999999998887654
No 305
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=85.76 E-value=16 Score=28.89 Aligned_cols=76 Identities=16% Similarity=0.108 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh----hhhhhhHHHHHHhcCC---CChHHHHHHHHHHHHHHHHh
Q 009975 134 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQD---KSWRVRYMVANQLYELCEAV 206 (521)
Q Consensus 134 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~d---~~~~vR~~~~~~l~~i~~~~ 206 (521)
-.+.+..+.+-++..++.+...|+.+|..+.++.++. .....++.-+.+++.. .+..||..+.+.+......+
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3455666666677778888999999999998887762 1222333335555543 57789999999998888887
Q ss_pred CCC
Q 009975 207 GPE 209 (521)
Q Consensus 207 ~~~ 209 (521)
+..
T Consensus 115 ~~~ 117 (133)
T cd03561 115 GGH 117 (133)
T ss_pred cCC
Confidence 764
No 306
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=85.59 E-value=16 Score=28.84 Aligned_cols=86 Identities=19% Similarity=0.187 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh----hhhhhhHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHhCC
Q 009975 135 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP 208 (521)
Q Consensus 135 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~d~--~~~vR~~~~~~l~~i~~~~~~ 208 (521)
...+..+.+-+++.++.+...|+.++..+.++.+.. .....++..+..++.++ .+.||..+...+...+..++.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 345556666667788888888888888888887653 23344566666666553 234899999988888888876
Q ss_pred CccccchHHHHH
Q 009975 209 EPTRMDLVPAYV 220 (521)
Q Consensus 209 ~~~~~~l~~~l~ 220 (521)
+.....+...+.
T Consensus 116 ~~~~~~i~~~y~ 127 (133)
T smart00288 116 DPDLSQIVDVYD 127 (133)
T ss_pred CCCchHHHHHHH
Confidence 544444444443
No 307
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=85.54 E-value=34 Score=32.62 Aligned_cols=109 Identities=8% Similarity=0.080 Sum_probs=71.3
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH--HHHHhhhHHHHHhh-----hcCcchHHHHHHHHHHHHhhcccC
Q 009975 369 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEM-----INNPHYLYRMTILRAISLLAPVMG 441 (521)
Q Consensus 369 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~-----l~~~~~~~r~~a~~~l~~l~~~~~ 441 (521)
+.++..+..++..++.+....+.-++|.++..-.. ....+.++..+.+. --|.|-++..+++.++..+.--..
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 44777788899999999999999999998753321 22233444444443 346788889999999999874332
Q ss_pred h-HHH-hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975 442 S-EIT-CSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 442 ~-~~~-~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~ 477 (521)
. ..+ ..-+...++..++-..|.|...-..++.-+..
T Consensus 394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d 431 (604)
T KOG4500|consen 394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRD 431 (604)
T ss_pred chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHh
Confidence 2 222 23345556666667777777776666665543
No 308
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=85.51 E-value=35 Score=32.67 Aligned_cols=71 Identities=14% Similarity=0.193 Sum_probs=48.7
Q ss_pred HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH------HHHhhHHHHHHHhcCCCCc----cHHHHHHHHHHHH
Q 009975 445 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS------MVEKTIRPCLVELTEDPDV----DVRFFATQAIQSI 514 (521)
Q Consensus 445 ~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~------~~~~~~~~~l~~l~~D~~~----~vr~~a~~al~~l 514 (521)
+.+..+...-.+++++++.+|..|..+...+.-....+ ...-...|....+-..... ++|..+...+..+
T Consensus 271 ~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~l 350 (372)
T PF12231_consen 271 HLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNL 350 (372)
T ss_pred hHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhch
Confidence 45677888888999999999999999999987654322 2223446665555444444 6777777666654
Q ss_pred H
Q 009975 515 D 515 (521)
Q Consensus 515 ~ 515 (521)
-
T Consensus 351 l 351 (372)
T PF12231_consen 351 L 351 (372)
T ss_pred H
Confidence 3
No 309
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=84.91 E-value=7.7 Score=27.82 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=47.2
Q ss_pred HhhcHHHHHHhh-cCCCCchHHHHHHHHHHHHHhhhchHHHH--hhHHHHHHHhcCCCCccHHHHHHHHHH
Q 009975 445 TCSRLLPVVINA-SKDRVPNIKFNVAKVLQSLIPIVDQSMVE--KTIRPCLVELTEDPDVDVRFFATQAIQ 512 (521)
Q Consensus 445 ~~~~il~~l~~~-l~d~~~~VR~~a~~~l~~~~~~~~~~~~~--~~~~~~l~~l~~D~~~~vr~~a~~al~ 512 (521)
+...++..+... ...++..||...+.++..+....+..--. ..++..+.....|.+.++-..|-.+++
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 455555555554 45567889999999999988866543221 567777777788888888777776665
No 310
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.61 E-value=57 Score=34.33 Aligned_cols=359 Identities=12% Similarity=0.058 Sum_probs=178.4
Q ss_pred HHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCC-----hhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhc---
Q 009975 113 VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ-----DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS--- 184 (521)
Q Consensus 113 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~--- 184 (521)
-|+.....+...-..++ +...+.+...+.++..+.+ ...-.+.+-.+..++++++.... .-+|-+.+.+
T Consensus 440 YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~--~~i~rl~~~~asi 516 (982)
T KOG2022|consen 440 YRKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES--TWIPRLFETSASI 516 (982)
T ss_pred HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh--HHHHHHHHhcccc
Confidence 35555555555444444 4444555556666655443 34556677888888888766422 2233333322
Q ss_pred --CCCChHHHHHHHHHHHHHHHHhCCCcc-ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhhhHHHH
Q 009975 185 --QDKSWRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVK 259 (521)
Q Consensus 185 --~d~~~~vR~~~~~~l~~i~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~ 259 (521)
+-.++..-..+...+|..+..+++... .+..+|.+.+.+...+.++ .+...+.++++.+..+ .+...++....
T Consensus 517 k~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s~--q~i~tl~tlC~~C~~~L~py~d~~~a~~~ 594 (982)
T KOG2022|consen 517 KLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKESE--QAISTLKTLCETCPESLDPYADQFSAVCY 594 (982)
T ss_pred ccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchHHH--HHHHHHHHHHHhhhhhCchHHHHHHHHHH
Confidence 124777888899999999988876543 3567888888887554443 3555577777765432 22233333333
Q ss_pred Hhcc--CCcHHHHHHHHHHHHccccccChHHHHHhHHHH---HHHhh----cC--CChHHHHHHHH---HHHHhhhhh-c
Q 009975 260 ELSS--DSSQHVRSALASVIMGMAPLLGKDATIEQLLPI---FLSLL----KD--EFPDVRLNIIS---KLDQVNQVI-G 324 (521)
Q Consensus 260 ~~~~--d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~---l~~~l----~d--~~~~vr~~a~~---~l~~~~~~~-~ 324 (521)
+.+. ......|..+..++|.+......+...+++... +..-+ .. ++++-+...+- ++..+...+ +
T Consensus 595 e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~ 674 (982)
T KOG2022|consen 595 EVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLIN 674 (982)
T ss_pred HHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 3332 223457778888888887766544433333222 22211 11 12222222221 222222111 0
Q ss_pred ---------------------hhhHhhhHHHHHHHHhc--CCChHHHHHHHHHhHHHHhhhChhhhH----HHHHHHHHH
Q 009975 325 ---------------------IDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQ 377 (521)
Q Consensus 325 ---------------------~~~~~~~~~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~~~~~----~~l~~~l~~ 377 (521)
.-.+...++|.+..... -++..+-.+++.....-....+.+ |. +.+.+.+..
T Consensus 675 ~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~s-F~~p~l~~l~~Fi~r 753 (982)
T KOG2022|consen 675 KKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTS-FPEPMLPSLCPFIVR 753 (982)
T ss_pred CCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhcccccccc-chhhhHHHHHHHHHH
Confidence 01133566666665443 122334444333332222333333 33 334444444
Q ss_pred HcCCCcHHHHHHHHHHHHHHHHHhCHHHHH-----------hhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccC-----
Q 009975 378 WLQDKVYSIRDAAANNLKRLAEEFGPEWAM-----------QHITPQVLEMINNPHYLYRMTILRAISLLAPVMG----- 441 (521)
Q Consensus 378 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-----------~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~----- 441 (521)
+...+....-.-...++- ..++.+... +..+-.+.+..-.+++..-.....++..+.+..+
T Consensus 754 ~~~~~~a~tl~l~~~~l~---~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~ 830 (982)
T KOG2022|consen 754 FLTSCLAVTLSLIAACLL---AKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEP 830 (982)
T ss_pred hccchHHHHHHHHHHHHH---hhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCcccc
Confidence 333222111110000110 111111111 1111111111112345555666667777666433
Q ss_pred -hHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc
Q 009975 442 -SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 480 (521)
Q Consensus 442 -~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~ 480 (521)
...|...+++..+.++..+.+.--.++++.+..+...-+
T Consensus 831 ~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~ 870 (982)
T KOG2022|consen 831 SMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYAT 870 (982)
T ss_pred chHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcc
Confidence 234567788888899999888777788888877765543
No 311
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=84.29 E-value=29 Score=30.76 Aligned_cols=90 Identities=13% Similarity=0.100 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhhcCh------hhhhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHh
Q 009975 154 LLAVEGCAALGKLLEP------QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRL 222 (521)
Q Consensus 154 ~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~~~~~----~~~~l~~~l~~~ 222 (521)
+.|...+..++.+-.. ....-++.|++....+. +...+|-.....+|.+.+.-.++. ...+++|...+.
T Consensus 68 cnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~ 147 (262)
T PF04078_consen 68 CNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRI 147 (262)
T ss_dssp HHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHH
Confidence 4556666666665221 12334578888766655 345688888877777775322222 135788888888
Q ss_pred cCCChHHHHHHHHHhHHHHHh
Q 009975 223 LRDNEAEVRIAAAGKVTKFCR 243 (521)
Q Consensus 223 l~d~~~~vr~~a~~~l~~l~~ 243 (521)
++-++.--|..|...+..+..
T Consensus 148 me~GselSKtvAtfIlqKIL~ 168 (262)
T PF04078_consen 148 MEFGSELSKTVATFILQKILL 168 (262)
T ss_dssp HHHS-HHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHc
Confidence 877766667777766666544
No 312
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=84.16 E-value=11 Score=27.11 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHh-cCCCChHHHHHHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 009975 94 LKTELRSIYTQL-CQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCA 161 (521)
Q Consensus 94 ~~~~l~~~l~~l-~~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~ 161 (521)
..+.++..+... ....+..||+....++..++...+. ..-|+.++..+.....++++.+-..|.+++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 355666666665 4556889999999999999876654 2347788888888888877777777766554
No 313
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=83.58 E-value=31 Score=30.54 Aligned_cols=49 Identities=12% Similarity=0.217 Sum_probs=29.2
Q ss_pred cHHHHHHhhcCCCC--chHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCC
Q 009975 448 RLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTED 498 (521)
Q Consensus 448 ~il~~l~~~l~d~~--~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D 498 (521)
.++..++..+.++. +.+=.+.+++|..++.. .+.+...+++.|..+..+
T Consensus 114 ~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~--RP~~~~~Il~~ll~~~~~ 164 (239)
T PF11935_consen 114 GLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQ--RPQFMSRILPALLSFNPN 164 (239)
T ss_dssp HHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHH--SGGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHhcCcc
Confidence 45556666665554 45555667777777663 233456778887776443
No 314
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=82.65 E-value=23 Score=28.30 Aligned_cols=87 Identities=13% Similarity=0.101 Sum_probs=55.8
Q ss_pred HHHHHHHHhhc-CCChhHHHHHHHHHHHHhhhcChh----hhhhhhHHH-HHHhcCC---CChHHHHHHHHHHHHHHHHh
Q 009975 136 DIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPV-IVNFSQD---KSWRVRYMVANQLYELCEAV 206 (521)
Q Consensus 136 ~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~-l~~~~~d---~~~~vR~~~~~~l~~i~~~~ 206 (521)
+.+..+.+-++ +.++.+...|+.++..+.++.+.. .....++.- +.+++.+ .+..||..+.+.+...+..+
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 33444444444 457778888888888888887753 233445554 5665543 34589999999999998888
Q ss_pred CCCccccchHHHHHHh
Q 009975 207 GPEPTRMDLVPAYVRL 222 (521)
Q Consensus 207 ~~~~~~~~l~~~l~~~ 222 (521)
+.+...+.+...+..+
T Consensus 118 ~~~~~l~~i~~~y~~L 133 (141)
T cd03565 118 RGSPDLTGVVEVYEEL 133 (141)
T ss_pred CCCccchHHHHHHHHH
Confidence 7655444444444443
No 315
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=82.28 E-value=60 Score=32.83 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=26.9
Q ss_pred HHHHHHHHhHHHHhhhChhhhH----HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 009975 347 VRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 400 (521)
Q Consensus 347 vr~~~~~~l~~l~~~~~~~~~~----~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 400 (521)
+|-++++.++.+++..-++... +.+..++-.++.|.+|.++..|+++++.+++.
T Consensus 496 ~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~ 553 (559)
T PF14868_consen 496 VKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAER 553 (559)
T ss_pred chHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc
Confidence 5555555555555444332222 22333334456666666666666666665543
No 316
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=81.98 E-value=2.1 Score=23.26 Aligned_cols=15 Identities=20% Similarity=0.133 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHccc
Q 009975 267 QHVRSALASVIMGMA 281 (521)
Q Consensus 267 ~~vr~~~~~~l~~i~ 281 (521)
|.||..++.+++.+.
T Consensus 1 ~~vR~~aa~aLg~~~ 15 (30)
T smart00567 1 PLVRHEAAFALGQLG 15 (30)
T ss_pred CHHHHHHHHHHHHcC
Confidence 346666776666663
No 317
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=81.70 E-value=11 Score=30.00 Aligned_cols=81 Identities=20% Similarity=0.307 Sum_probs=47.4
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHcccc-ccChHHHHH
Q 009975 213 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP-LLGKDATIE 291 (521)
Q Consensus 213 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~-~~~~~~~~~ 291 (521)
+.+...+..++.+++.+|+..|++|+...-. ......-..+..+++|.. .|.........-.. .+. +...+
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~-----~~l~pY~d~L~~Lldd~~--frdeL~~f~~~~~~~~I~-~ehR~ 87 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD-----PYLTPYKDNLENLLDDKT--FRDELTTFNLSDESSVIE-EEHRP 87 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----HHHHhHHHHHHHHcCcch--HHHHHHhhcccCCcCCCC-HHHHh
Confidence 5678888899999999999999999877533 122233455667777664 34444322211110 011 22345
Q ss_pred hHHHHHHHhh
Q 009975 292 QLLPIFLSLL 301 (521)
Q Consensus 292 ~l~~~l~~~l 301 (521)
.++|+++.++
T Consensus 88 ~l~pvvlRIL 97 (141)
T PF07539_consen 88 ELMPVVLRIL 97 (141)
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 318
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=81.68 E-value=16 Score=27.89 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=27.3
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH
Q 009975 408 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 444 (521)
Q Consensus 408 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~ 444 (521)
..++..|...+++++|++..-++..+..+.+.+|..+
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f 72 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF 72 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH
Confidence 4466667777777788888888888888887777654
No 319
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=81.25 E-value=5.1 Score=38.92 Aligned_cols=109 Identities=9% Similarity=0.103 Sum_probs=76.7
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHH---HHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH-
Q 009975 369 DKLGALCMQWLQDKVYSIRDAAANNLKRLA---EEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI- 444 (521)
Q Consensus 369 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~---~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~- 444 (521)
..+...++..+++|+-.+...+...+-.++ ..+|..+....++..+.+++.+++..+|....+.+.++.-.+....
T Consensus 430 ~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 430 YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred cchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence 457778888888876655544433333322 2345556678889999998888888888888998888775444331
Q ss_pred --HhhcH-HHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975 445 --TCSRL-LPVVINASKDRVPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 445 --~~~~i-l~~l~~~l~d~~~~VR~~a~~~l~~~~~ 477 (521)
+...+ +..++...+|+.+.|....++.+..+.-
T Consensus 510 f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 510 FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 22222 5678889999999999999999988754
No 320
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=80.20 E-value=44 Score=30.02 Aligned_cols=128 Identities=16% Similarity=0.161 Sum_probs=74.4
Q ss_pred HHHHHHHhhcCCC----hHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhH
Q 009975 293 LLPIFLSLLKDEF----PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD 368 (521)
Q Consensus 293 l~~~l~~~l~d~~----~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~ 368 (521)
.+|.+...+.+++ ......++..+..+++.-|... +-..+..+.+........-....+..+...+.++. .
T Consensus 112 ~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~----La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~-~ 186 (262)
T PF14225_consen 112 LLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPN----LARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDH-E 186 (262)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCcc----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchh-H
Confidence 4666666666665 1334456677887776544333 23333334433332222222233344444443332 2
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHH-HHHhhhHHHHHhhhcCcchHH
Q 009975 369 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLY 425 (521)
Q Consensus 369 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~~~~~~~ 425 (521)
-.++-.+..++.+...++|..++..+..+....... ....+++..+.++++.+.|.-
T Consensus 187 ~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~e 244 (262)
T PF14225_consen 187 FQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLWME 244 (262)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccHHH
Confidence 345666788888999999999999999888655211 134457777777888777653
No 321
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=79.61 E-value=2.6 Score=24.75 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=13.8
Q ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHH
Q 009975 488 IRPCLVELTEDPDVDVRFFATQAIQSI 514 (521)
Q Consensus 488 ~~~~l~~l~~D~~~~vr~~a~~al~~l 514 (521)
.+|.|.+++..++.+++..+++++..+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 344444444445555555555555544
No 322
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=79.45 E-value=24 Score=26.53 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcC--CChHHHHHHHHHhHHHHhhhCh
Q 009975 308 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGV 364 (521)
Q Consensus 308 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~vr~~~~~~l~~l~~~~~~ 364 (521)
-|+.++.+++.+.+..|... ....|.+...+.. ..+..|..++++...+.+.++.
T Consensus 31 ek~~~i~ai~~lI~~~g~~i--~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 31 EKKRALRSIGFLIKLMGKHI--SSALPQIMACLQSALEIPELRSLALRCWHVLIKTLKE 87 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCH
Confidence 36666666666666444221 2333332222211 1233555555555555555444
No 323
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=79.13 E-value=29 Score=27.24 Aligned_cols=145 Identities=12% Similarity=0.044 Sum_probs=81.7
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccC-hHHHh
Q 009975 370 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG-SEITC 446 (521)
Q Consensus 370 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~-~~~~~ 446 (521)
++..+.-++-...+.+.++.....|+.++-.--+.. ..-.++..+.+.+..+|..+.+-++..++.++..-. .+.+.
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ 96 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIR 96 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHH
Confidence 344444445455666667766666666641100000 123466777788888888888877777777664222 22222
Q ss_pred h-cHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH----HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 009975 447 S-RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 515 (521)
Q Consensus 447 ~-~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~----~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~ 515 (521)
+ .=+|.++..++++...+-..++-++..+... +.. -..+.++..+.+.......+-|..|..+++..+
T Consensus 97 ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~-~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~ 169 (173)
T KOG4646|consen 97 EALGLPLIIFVLSSPPEITVHSAALFLQLLEFG-ERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKHV 169 (173)
T ss_pred HhcCCceEEeecCCChHHHHHHHHHHHHHhcCc-ccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence 2 2357778888888887777777776655432 111 122344444444444445555666666665543
No 324
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.04 E-value=65 Score=31.29 Aligned_cols=345 Identities=14% Similarity=0.171 Sum_probs=160.6
Q ss_pred HHHHHHHHhhhcChh--hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCChHHH
Q 009975 156 AVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEV 230 (521)
Q Consensus 156 a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~---~~~~~~l~~~l~~~l~d~~~~v 230 (521)
|+..+-++++.+.-+ ...+.++..+.+.++-.+...-.....-+..+.- ++. ......++.-+.+++....+..
T Consensus 283 a~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~dL 361 (791)
T KOG1222|consen 283 AVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHPDL 361 (791)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCHHH
Confidence 344455555544332 2345567777776665554444444443333322 222 1223467778888888888889
Q ss_pred HHHHHHhHHHHHhhhC--HHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccc--cccChHHHHHhHHHHHHHhh-cCCC
Q 009975 231 RIAAAGKVTKFCRILN--PELAIQHILPCVKELSSDSSQHVRSALASVIMGMA--PLLGKDATIEQLLPIFLSLL-KDEF 305 (521)
Q Consensus 231 r~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~--~~~~~~~~~~~l~~~l~~~l-~d~~ 305 (521)
|.+.+..+-.+.-..| +..+..-++|.+..++.+.... ..|...+.-++ +.+..-....+.++.+.+.+ ...+
T Consensus 362 ~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~ 439 (791)
T KOG1222|consen 362 RKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTG 439 (791)
T ss_pred HHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9888887766544332 3344455788888887665432 11222222111 00000111233444444322 2222
Q ss_pred hHHHHHHHHHHHHh----------hhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh--hhhHHHHHH
Q 009975 306 PDVRLNIISKLDQV----------NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGA 373 (521)
Q Consensus 306 ~~vr~~a~~~l~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~ 373 (521)
.+|-...+..--.+ ++.-|.+. .+...++..+.- ..+.+..+.++=|+ ..|.+++-.
T Consensus 440 ~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~-------LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fidyvgd 508 (791)
T KOG1222|consen 440 SEVDLALIALCINLCLNKRNAQLVCEGQGLDL-------LMERAIKSRDLL----LMKVVRNISQHEGATQNMFIDYVGD 508 (791)
T ss_pred ceecHHHHHHHHHHHhccccceEEecCcchHH-------HHHHHhcccchH----HHHHHHHhhhccchHHHHHHHHHHH
Confidence 33322222111111 11111111 111111222211 12223333444332 234444444
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHh--CHHH----HHhhhHHHHHhhhcCc--chHHHHHHHHHHHHhhcccChHHH
Q 009975 374 LCMQWLQDKVYSIRDAAANNLKRLAEEF--GPEW----AMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEIT 445 (521)
Q Consensus 374 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~----~~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~~~~~~~ 445 (521)
+.-..-.|++.. ..++|+|.+...- ..+| ....++|.+...+... ...+....+-++|.++........
T Consensus 509 La~i~~nd~~E~---F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~L 585 (791)
T KOG1222|consen 509 LAGIAKNDNSES---FGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARL 585 (791)
T ss_pred HHHHhhcCchHH---HHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHH
Confidence 333333444443 5667777776422 1122 2367888888776542 123444455556666543222211
Q ss_pred --hhcHHHHHHhhcCCC--CchHHHHHHHHHHHHHhhh-chHH-HHh-hHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 009975 446 --CSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIV-DQSM-VEK-TIRPCLVELTEDPDVDVRFFATQAIQSIDHV 517 (521)
Q Consensus 446 --~~~il~~l~~~l~d~--~~~VR~~a~~~l~~~~~~~-~~~~-~~~-~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~ 517 (521)
...+++.++.+++.. +.+.-...+.++-++..+- ..+. ..+ ..-..+..+..|.+.+||...-.|+.-+.+.
T Consensus 586 la~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 586 LAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred hCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 234666666665421 2223333344444444331 1121 122 2334566789999999999998888877653
No 325
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=78.84 E-value=72 Score=31.62 Aligned_cols=82 Identities=16% Similarity=0.032 Sum_probs=43.8
Q ss_pred hhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCCh--HHHHHHHHHHHHhhhhhchhhHhh
Q 009975 253 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP--DVRLNIISKLDQVNQVIGIDLLSQ 330 (521)
Q Consensus 253 ~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~~~~~~~~~~~~~ 330 (521)
..+-.+...++.++...+.+++-.++.....-.. ++++..+..+..+.+. ++..-|.-+++.+.-..-...+..
T Consensus 450 palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~----eevl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~ts 525 (881)
T COG5110 450 PALALLSNYLQSSSSKHVIAAILGLGAAFSGTQA----EEVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTS 525 (881)
T ss_pred hHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcH----HHHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHHH
Confidence 3455666777788888888877666655433333 4455555556666655 444444444544321111122334
Q ss_pred hHHHHHHH
Q 009975 331 SLLPAIVE 338 (521)
Q Consensus 331 ~~~~~l~~ 338 (521)
.++..+.+
T Consensus 526 ~ilqtf~E 533 (881)
T COG5110 526 LILQTFVE 533 (881)
T ss_pred HHHHHHHH
Confidence 55555554
No 326
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.46 E-value=89 Score=35.48 Aligned_cols=253 Identities=14% Similarity=0.166 Sum_probs=135.5
Q ss_pred cCCChhHHHHHHHHHHHHhhhcC-hhh-----h-hhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHH
Q 009975 146 QDDQDSVRLLAVEGCAALGKLLE-PQD-----C-VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA 218 (521)
Q Consensus 146 ~d~~~~vr~~a~~~l~~l~~~~~-~~~-----~-~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~ 218 (521)
.+++..|-..+++.+..+.-.+- .+. . ...+.|.-.....+.+..+|..+++++..-. +-.|..++.+
T Consensus 1001 ~~~n~~vaifa~DslRQlsmkfle~~el~~f~Fq~~fl~Pfe~im~~s~s~~Irelv~rC~~~ni-----kSGWk~if~i 1075 (1514)
T KOG0929|consen 1001 CNSNESVAIFALDSLRQLSMKFLERSELDNFRFQKDFLRPFEHIMKRSSSAEIRELVVRCISSNI-----KSGWKNIFKI 1075 (1514)
T ss_pred cCCCCceEEEehhhhHHhhhhhcchhhhhhhhHHHhhcCcchHHhhccCcchhHHHHHhhhhhhh-----hhhhhHHHHH
Confidence 34455555555555555543321 111 1 1225555555667788899999999887222 2236778888
Q ss_pred HHHhcCCChHHHHHHHHHhHHHHHhhhCHH------HHHHhhhHHHHHhccC------CcHHH---HHHHHHHHHc-ccc
Q 009975 219 YVRLLRDNEAEVRIAAAGKVTKFCRILNPE------LAIQHILPCVKELSSD------SSQHV---RSALASVIMG-MAP 282 (521)
Q Consensus 219 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------~~~~~~~~~l~~~~~d------~~~~v---r~~~~~~l~~-i~~ 282 (521)
+-....|....+-..+...+..+....-.. ......++.+.+...+ ....+ |..+-..-.. ...
T Consensus 1076 ~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~ 1155 (1514)
T KOG0929|consen 1076 FTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNE 1155 (1514)
T ss_pred HHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccccchh
Confidence 888888888888777777777544433221 1222334444443321 22222 2222111111 000
Q ss_pred cc------ChHHHHHhHHHHHHH---hhcCCChHHHHHHHHHHHHhhhhhchhh---Hhh----hHHHHHHHHhcCCC--
Q 009975 283 LL------GKDATIEQLLPIFLS---LLKDEFPDVRLNIISKLDQVNQVIGIDL---LSQ----SLLPAIVELAEDRH-- 344 (521)
Q Consensus 283 ~~------~~~~~~~~l~~~l~~---~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~----~~~~~l~~~~~~~~-- 344 (521)
.+ +.+......+|.+.. ...+...+||..+++.+-.+....|.+. +++ .++|.+..+..+.+
T Consensus 1156 ~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~ 1235 (1514)
T KOG0929|consen 1156 KLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDES 1235 (1514)
T ss_pred hcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchh
Confidence 01 112223345666544 3447889999999999998887766432 123 33344433222211
Q ss_pred ---hHHHHHHHHHhHHHHhhhCh-----hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH
Q 009975 345 ---WRVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 403 (521)
Q Consensus 345 ---~~vr~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 403 (521)
......+..++..++..+.. ....+.++-.+..+.+.++..+-.....|+..+....|.
T Consensus 1236 ~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~ 1302 (1514)
T KOG0929|consen 1236 EKDEWLSTTCNHALQALVDLFTQFFKQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGE 1302 (1514)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhccc
Confidence 12333444444444333221 123345555666777788888888888999888877664
No 327
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=78.08 E-value=83 Score=31.97 Aligned_cols=52 Identities=25% Similarity=0.271 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh
Q 009975 425 YRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 479 (521)
Q Consensus 425 ~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~ 479 (521)
+=.++++++..+.. ...-...++..+.+..-+.++.||..|.++|..++...
T Consensus 451 Lf~t~i~aiPrcL~---~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~ 502 (552)
T PF14222_consen 451 LFRTCIQAIPRCLP---SSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDK 502 (552)
T ss_pred HHHHHHHHccccCC---CCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcC
Confidence 33445555544443 23334778999999999999999999999999999876
No 328
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=77.88 E-value=3.6 Score=24.11 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=15.7
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHH
Q 009975 449 LLPVVINASKDRVPNIKFNVAKVLQSL 475 (521)
Q Consensus 449 il~~l~~~l~d~~~~VR~~a~~~l~~~ 475 (521)
.++.+.+++.++++.++..++.+|..+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 455555555555666666666666554
No 329
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.80 E-value=72 Score=31.05 Aligned_cols=94 Identities=16% Similarity=0.186 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh--hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC--CC
Q 009975 134 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PE 209 (521)
Q Consensus 134 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~--~~ 209 (521)
..-+..++.+.+.-++...-...+..+..+.-+-... .....++.-+.+++....++.|+.....+-.+.---| +.
T Consensus 302 rkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K 381 (791)
T KOG1222|consen 302 RKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK 381 (791)
T ss_pred HHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence 3446666666666566665556666665554443222 2234477778888888889999988887766543222 22
Q ss_pred ccccchHHHHHHhcCCCh
Q 009975 210 PTRMDLVPAYVRLLRDNE 227 (521)
Q Consensus 210 ~~~~~l~~~l~~~l~d~~ 227 (521)
.....++|.+..++.++.
T Consensus 382 Mv~~GllP~l~~ll~~d~ 399 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDSDT 399 (791)
T ss_pred HhhccchHHHHHHhCCcc
Confidence 334578899999888764
No 330
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=77.52 E-value=31 Score=26.64 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=17.5
Q ss_pred hhHHHHHHHHhc-CCChHHHHHHHHHhHHHHhhh
Q 009975 330 QSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQL 362 (521)
Q Consensus 330 ~~~~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~ 362 (521)
..++|.+.+.++ ....+.|.++...++.++...
T Consensus 5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~ 38 (121)
T PF12397_consen 5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV 38 (121)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc
Confidence 445555555544 445555555555555555443
No 331
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.82 E-value=1.1e+02 Score=32.72 Aligned_cols=91 Identities=18% Similarity=0.235 Sum_probs=69.0
Q ss_pred hhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChH--HH---hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch--
Q 009975 409 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--IT---CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-- 481 (521)
Q Consensus 409 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~--~~---~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~-- 481 (521)
.++..-..++.+++.++|..++.++....+.+... .+ .....|.++..+.+.++-+-+.|+.++..++...|.
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv 882 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFV 882 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHH
Confidence 34445556789999999999999998877655432 12 245677788889999999999999999999987664
Q ss_pred -HHHHhhHHHHHHHhcCCC
Q 009975 482 -SMVEKTIRPCLVELTEDP 499 (521)
Q Consensus 482 -~~~~~~~~~~l~~l~~D~ 499 (521)
..+.+.++|-+..++.|.
T Consensus 883 ~sR~l~dvlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 883 ASRFLEDVLPWLKHLCQDS 901 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 455688888888766553
No 332
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=76.25 E-value=23 Score=30.19 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=8.6
Q ss_pred CCcHHHHHHHHHHHHHHH
Q 009975 381 DKVYSIRDAAANNLKRLA 398 (521)
Q Consensus 381 d~~~~vr~~a~~~l~~l~ 398 (521)
+.-..||..|..++..+.
T Consensus 18 EKiDrvR~~A~~~l~~ll 35 (193)
T PF12612_consen 18 EKIDRVREVAGKCLQRLL 35 (193)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333445555555554444
No 333
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=75.68 E-value=52 Score=28.40 Aligned_cols=132 Identities=15% Similarity=0.244 Sum_probs=74.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcC-CChHHHHHHHHHh-HHHHhhhChhhhHHH
Q 009975 293 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYI-PLLASQLGVGFFDDK 370 (521)
Q Consensus 293 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~vr~~~~~~l-~~l~~~~~~~~~~~~ 370 (521)
+......+.+++.-+.|..|+..+...-.....+ -++.+..++.+ .+|.+-...+..+ +.+... .+.
T Consensus 47 ~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~-----~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~------~~~ 115 (208)
T cd07064 47 LWELVLELWQQPEREYQYVAIDLLRKYKKFLTPE-----DLPLLEELITTKSWWDTVDSLAKVVGGILLAD------YPE 115 (208)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHcCCchHHHHHHHHHHHhHHHHhC------Chh
Confidence 3444455666666677777776666544333322 24444444444 4566544333322 111111 123
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcc
Q 009975 371 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV 439 (521)
Q Consensus 371 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~ 439 (521)
..+.+..+..+++..+|.+|+-+.-.+.+... .+.+...+...+.|+.+-++.+.-++|..++..
T Consensus 116 ~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~----~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 116 FEPVMDEWSTDENFWLRRTAILHQLKYKEKTD----TDLLFEIILANLGSKEFFIRKAIGWALREYSKT 180 (208)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHccC----HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence 45677788888888888887765333333211 234455556677788888888888888877764
No 334
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=75.58 E-value=96 Score=31.42 Aligned_cols=163 Identities=11% Similarity=0.161 Sum_probs=89.4
Q ss_pred HHhhcChhHHHHhHHHHHHHhhcCC-CC-cchhhhhhhhhhhcCCCChHH-HHHHHHHHHH---hc-----CCCChHHHH
Q 009975 47 IGSQMRESDLVDWYIPLVKRLAAGE-WF-TARVSACGLFHIAYPSAPDIL-KTELRSIYTQ---LC-----QDDMPMVRR 115 (521)
Q Consensus 47 i~~~~~~~~~~~~l~p~i~~~~~~~-~~-~~r~~~~~~~~~~~~~~~~~~-~~~l~~~l~~---l~-----~~~~~~vr~ 115 (521)
...++...+.+..++..+.+..++. |. ..-...|-.+|.+....++.. +..+...+.. ++ +|....|..
T Consensus 469 yLthL~v~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvAS 548 (1053)
T COG5101 469 YLTHLIVDDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVAS 548 (1053)
T ss_pred HHhhhhhhhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhec
Confidence 3344555666778888887766654 32 222344555666665555552 2233333333 33 233233333
Q ss_pred HHHHhHHHHHHhhCc-hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh-------hhhhh---hHHHHHHhc
Q 009975 116 SAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-------DCVAH---ILPVIVNFS 184 (521)
Q Consensus 116 ~a~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-------~~~~~---l~~~l~~~~ 184 (521)
.....+|..-+.+.. -.+...+..-+.+.+.+..+.|+..|+..+-.+++.++-. +..++ ++.-+.+..
T Consensus 549 nIMyvvGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT 628 (1053)
T COG5101 549 NIMYVVGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTT 628 (1053)
T ss_pred ceeeeeccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhc
Confidence 333333332221111 1233444555666777888899999999999998876531 12233 333444455
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCC
Q 009975 185 QDKSWRVRYMVANQLYELCEAVGPE 209 (521)
Q Consensus 185 ~d~~~~vR~~~~~~l~~i~~~~~~~ 209 (521)
.|-.|.-+....++++-+.+..++.
T Consensus 629 ~dL~pqQ~htfYeAcg~vIse~p~~ 653 (1053)
T COG5101 629 GDLEPQQKHTFYEACGMVISEVPKT 653 (1053)
T ss_pred ccCChHHHhHHHHHHhHHHhccchh
Confidence 5667777777888888777655543
No 335
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=75.43 E-value=1.2e+02 Score=33.12 Aligned_cols=71 Identities=13% Similarity=0.078 Sum_probs=40.7
Q ss_pred CCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCC--cHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhh
Q 009975 224 RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS--SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL 301 (521)
Q Consensus 224 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~--~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l 301 (521)
.|.|-.-+..|+..+..+-...+. ..+...+.|. -+++|.+|+.++...+.....=.-...++.++....
T Consensus 653 ~drDVvAQ~EAI~~le~~p~~~s~--------~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~f 724 (1180)
T KOG1932|consen 653 QDRDVVAQMEAIESLEALPSTASR--------SALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKF 724 (1180)
T ss_pred hcccHHHHHHHHHHHHcCCcchhH--------HHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHh
Confidence 566555566666666554443222 3344444443 579999999999988754311112345666666554
Q ss_pred c
Q 009975 302 K 302 (521)
Q Consensus 302 ~ 302 (521)
.
T Consensus 725 c 725 (1180)
T KOG1932|consen 725 C 725 (1180)
T ss_pred c
Confidence 4
No 336
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=75.16 E-value=55 Score=30.79 Aligned_cols=89 Identities=11% Similarity=0.017 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh----hhhhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhC
Q 009975 133 LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVG 207 (521)
Q Consensus 133 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~ 207 (521)
.....+..+.+-++..++.|-..|+.++..++.++++ +.+...+...+..++. ...+.|+......+.+.++.++
T Consensus 42 ~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K 121 (462)
T KOG2199|consen 42 GGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFK 121 (462)
T ss_pred ccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc
Confidence 3455677777788888999999999999999988775 4455667777777777 5678899888888888888777
Q ss_pred CCccccchHHHHHH
Q 009975 208 PEPTRMDLVPAYVR 221 (521)
Q Consensus 208 ~~~~~~~l~~~l~~ 221 (521)
.+....-+...+.+
T Consensus 122 ~Dp~lsLi~~l~~k 135 (462)
T KOG2199|consen 122 KDPSLSLISALYKK 135 (462)
T ss_pred cCcchhHHHHHHHH
Confidence 76554433333333
No 337
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=74.56 E-value=4.9 Score=21.29 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhhh
Q 009975 308 VRLNIISKLDQVNQ 321 (521)
Q Consensus 308 vr~~a~~~l~~~~~ 321 (521)
||..|+.+|+.+..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 34445555554443
No 338
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=74.42 E-value=23 Score=28.28 Aligned_cols=82 Identities=13% Similarity=0.175 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhc
Q 009975 369 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSR 448 (521)
Q Consensus 369 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~ 448 (521)
+.+-..+..++.+++.+|+..|++|+-.+-. +. ....-..|..++.|.. .|.....+...-....-.+...+.
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~----~~-l~pY~d~L~~Lldd~~--frdeL~~f~~~~~~~~I~~ehR~~ 88 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD----PY-LTPYKDNLENLLDDKT--FRDELTTFNLSDESSVIEEEHRPE 88 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----HH-HHhHHHHHHHHcCcch--HHHHHHhhcccCCcCCCCHHHHhH
Confidence 5566778899999999999999999877532 11 1222345555666653 343333222111110011334677
Q ss_pred HHHHHHhhc
Q 009975 449 LLPVVINAS 457 (521)
Q Consensus 449 il~~l~~~l 457 (521)
++|.++..+
T Consensus 89 l~pvvlRIL 97 (141)
T PF07539_consen 89 LMPVVLRIL 97 (141)
T ss_pred HHHHHHHHH
Confidence 888887764
No 339
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=72.50 E-value=17 Score=25.09 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhc-ccChHHHh-hcHHHHHHhhc-CCCCchHHHHHHHHHHHHHhh
Q 009975 426 RMTILRAISLLAP-VMGSEITC-SRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPI 478 (521)
Q Consensus 426 r~~a~~~l~~l~~-~~~~~~~~-~~il~~l~~~l-~d~~~~VR~~a~~~l~~~~~~ 478 (521)
..+++.++++++. ..|..... ..+++.++++. +.++..+|-.+..+|+.+...
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 3466777777765 24444333 35666666654 356777777777777777654
No 340
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=72.27 E-value=33 Score=32.11 Aligned_cols=97 Identities=11% Similarity=0.076 Sum_probs=59.5
Q ss_pred hcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHH----HhhhHHHHH
Q 009975 340 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVL 415 (521)
Q Consensus 340 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~ 415 (521)
....+|.+-..++..++.-. ......+..+.+.++..++.|...|+..++.+...+|..+. ...+...+.
T Consensus 21 nT~enW~~IlDvCD~v~~~~------~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~ 94 (462)
T KOG2199|consen 21 NTSENWSLILDVCDKVGSDP------DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELR 94 (462)
T ss_pred cccccHHHHHHHHHhhcCCC------cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHH
Confidence 34567776555444332221 11234566777888888888888888888888888776543 234455555
Q ss_pred hhhc-CcchHHHHHHHHHHHHhhcccCh
Q 009975 416 EMIN-NPHYLYRMTILRAISLLAPVMGS 442 (521)
Q Consensus 416 ~~l~-~~~~~~r~~a~~~l~~l~~~~~~ 442 (521)
.+++ ..+.+++...-..+...++.+..
T Consensus 95 al~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 95 ALIESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 5655 45677777666666666664443
No 341
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=71.57 E-value=44 Score=25.73 Aligned_cols=72 Identities=8% Similarity=0.097 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHhhc-CCChhHHHHHHHHHHHHhhhcChh-hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 009975 133 LKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQ-DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 206 (521)
Q Consensus 133 ~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~ 206 (521)
+...++|.+.+.+. ....+.|.++.-.++.++...+-+ ...+.++..+.......+. .+.+..++..+....
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 45667888888777 667788888888888888775432 1222233332222222222 244555566565443
No 342
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=70.99 E-value=87 Score=28.86 Aligned_cols=92 Identities=10% Similarity=0.045 Sum_probs=41.6
Q ss_pred HHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHH--HHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcc-h
Q 009975 347 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI--RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPH-Y 423 (521)
Q Consensus 347 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v--r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~-~ 423 (521)
+|..+...+-.++..++.-.+...=+.-+-.++++-+..+ .+....++.........-....+.+..+.......| .
T Consensus 122 aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~kvmt~lLgtyt~dnas 201 (378)
T KOG2753|consen 122 ARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESSKVMTELLGTYTEDNAS 201 (378)
T ss_pred HHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHhcccchh
Confidence 6666666666665554432111111222334455533322 334444554444443322222333333333333333 6
Q ss_pred HHHHHHHHHHHHhhc
Q 009975 424 LYRMTILRAISLLAP 438 (521)
Q Consensus 424 ~~r~~a~~~l~~l~~ 438 (521)
.-|+.|.+++.....
T Consensus 202 ~AredA~rcV~~av~ 216 (378)
T KOG2753|consen 202 EAREDAMRCVVEAVK 216 (378)
T ss_pred HHHHHHHHHHHHHHc
Confidence 667777776666554
No 343
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=70.76 E-value=1.1e+02 Score=29.77 Aligned_cols=144 Identities=13% Similarity=0.029 Sum_probs=69.7
Q ss_pred HHHHHHhhcCCCh--hHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCC---Ccc
Q 009975 138 MSIFEDLTQDDQD--SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---EPT 211 (521)
Q Consensus 138 ~~~l~~l~~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~~---~~~ 211 (521)
+..+.++.+.++- .||..+.+.|..+...-..+.....-+..+..+.+ ...++..+..+..++.+.+.... ...
T Consensus 182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lv 261 (832)
T KOG3678|consen 182 LDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLV 261 (832)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4455555555543 67888888888776543333222222223333333 34445555566666665542211 011
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH----HHHhhhHHHHHhccCCcHHHHHHHHHHHHccc
Q 009975 212 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL----AIQHILPCVKELSSDSSQHVRSALASVIMGMA 281 (521)
Q Consensus 212 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~ 281 (521)
....+..+.-.++-.++.+-..+.-+|+.++-+-+.+. +.+.+-..+--+...++.-.|..++-++..++
T Consensus 262 aa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vla 335 (832)
T KOG3678|consen 262 AAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLA 335 (832)
T ss_pred hhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhh
Confidence 12233333334444556676677777777766654431 11222222333333445556666655555544
No 344
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.47 E-value=58 Score=32.01 Aligned_cols=99 Identities=7% Similarity=0.112 Sum_probs=68.4
Q ss_pred HHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH----hhcHHHH
Q 009975 377 QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPV 452 (521)
Q Consensus 377 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~ 452 (521)
..+.+++|..-...+..+.. . .+....++-.|.+.+++.+.++..-|+..|..+.+.+|..+. ...|++-
T Consensus 12 ~~l~~pDWa~NleIcD~IN~---~---~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~e 85 (470)
T KOG1087|consen 12 ESLAEPDWALNLEICDLINS---T---EGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNE 85 (470)
T ss_pred ccccCccHHHHHHHHHHHhc---C---ccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44566777664443333211 1 112345677788888888888888888888888888887654 3567777
Q ss_pred HHhhcCCC--CchHHHHHHHHHHHHHhhhch
Q 009975 453 VINASKDR--VPNIKFNVAKVLQSLIPIVDQ 481 (521)
Q Consensus 453 l~~~l~d~--~~~VR~~a~~~l~~~~~~~~~ 481 (521)
++...... ...||..++..|....+.++.
T Consensus 86 mVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 86 MVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 77776554 677999999999888887765
No 345
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=69.64 E-value=39 Score=28.45 Aligned_cols=56 Identities=13% Similarity=0.072 Sum_probs=39.3
Q ss_pred cchHHHHHHHHHHHHhhc-ccChHHH--hhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 009975 421 PHYLYRMTILRAISLLAP-VMGSEIT--CSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476 (521)
Q Consensus 421 ~~~~~r~~a~~~l~~l~~-~~~~~~~--~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~ 476 (521)
.+......++.++..+.. ..|-..+ .+..++.+...+..++..+|..+++.|..++
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 445667778888888776 2333332 2567888888888888999999998888765
No 346
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=69.57 E-value=1.9e+02 Score=32.27 Aligned_cols=68 Identities=21% Similarity=0.211 Sum_probs=42.6
Q ss_pred hhHHHHHhccCCcHHHHHHHHHHHHccccccCh-HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhh
Q 009975 254 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 321 (521)
Q Consensus 254 ~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 321 (521)
++......+-..+..+-.....++..+....+. ......++...+-.+.|++.+||..|+.-|..+-.
T Consensus 504 Ll~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~ 572 (1120)
T PF14228_consen 504 LLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIRSKAMQLLRALEE 572 (1120)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHHHHHH
Confidence 455555556556666655555555444321111 11234677777788889999999999988877643
No 347
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.11 E-value=52 Score=32.31 Aligned_cols=98 Identities=15% Similarity=0.163 Sum_probs=60.8
Q ss_pred HhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHH----HhhhHHHH
Q 009975 339 LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQV 414 (521)
Q Consensus 339 ~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l 414 (521)
.+.+++|..-..+++.+..-- +. ....+-.+.+.+++.++.|..-|+..|..+++.+|..+. .+.+++.+
T Consensus 13 ~l~~pDWa~NleIcD~IN~~~---~~---~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~em 86 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINSTE---GG---PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEM 86 (470)
T ss_pred cccCccHHHHHHHHHHHhcCc---cC---cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 345677776655554442111 11 124556667777777777777788888888888877654 24566666
Q ss_pred HhhhcC--cchHHHHHHHHHHHHhhcccCh
Q 009975 415 LEMINN--PHYLYRMTILRAISLLAPVMGS 442 (521)
Q Consensus 415 ~~~l~~--~~~~~r~~a~~~l~~l~~~~~~ 442 (521)
+.+... ....+|..++..|....+.++.
T Consensus 87 Vk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 87 VKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 555443 3567888888887777765543
No 348
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=66.00 E-value=1e+02 Score=33.60 Aligned_cols=126 Identities=15% Similarity=0.124 Sum_probs=65.9
Q ss_pred cCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc
Q 009975 146 QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL 223 (521)
Q Consensus 146 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~--~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l 223 (521)
.|.+-.-+..|++.+..+.... ....+...+.|. -+++|..|+.+|...+.....=...+.++.++.+..
T Consensus 653 ~drDVvAQ~EAI~~le~~p~~~--------s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~f 724 (1180)
T KOG1932|consen 653 QDRDVVAQMEAIESLEALPSTA--------SRSALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKF 724 (1180)
T ss_pred hcccHHHHHHHHHHHHcCCcch--------hHHHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHh
Confidence 4444444556666555443322 114444555553 478999999999988765422223467777777754
Q ss_pred CCCh--------------HHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhcc--C------CcHHHHHHHHHHHHccc
Q 009975 224 RDNE--------------AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS--D------SSQHVRSALASVIMGMA 281 (521)
Q Consensus 224 ~d~~--------------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~--d------~~~~vr~~~~~~l~~i~ 281 (521)
-+.+ --|+.+...++..+-..-|. ..+.+.+.+.+++. | .+..-|.++++.++...
T Consensus 725 c~k~stIpKsNnF~~~q~Yfvq~~iP~a~a~lR~~~g~--cp~~V~~FlLdLlkyNDNs~N~YSD~~y~a~LIesl~~~l 802 (1180)
T KOG1932|consen 725 CSKDSTIPKSNNFSNFQEYFVQCAIPVAFASLRGREGK--CPKEVKAFLLDLLKYNDNSFNSYSDDYYRASLIESLVESL 802 (1180)
T ss_pred ccccCCCCCcCccccHHHHHHHHhhHHHHHHhccccCC--ChHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHhhhc
Confidence 2211 22444444444443332221 12334555555552 2 12345677777776654
No 349
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=65.85 E-value=97 Score=27.46 Aligned_cols=145 Identities=19% Similarity=0.244 Sum_probs=69.0
Q ss_pred hhcCCChHHHHHHHHHHHHhhhh----hch----hhH---hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhH
Q 009975 300 LLKDEFPDVRLNIISKLDQVNQV----IGI----DLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD 368 (521)
Q Consensus 300 ~l~d~~~~vr~~a~~~l~~~~~~----~~~----~~~---~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~ 368 (521)
+++|+++.|.+.++.+...+... +.. +.. ...+...+.....+.++.+|..+++.+..+.-......-.
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 35677777777777776655432 111 111 1234445555667778888888888888776655432110
Q ss_pred -HHH----HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcc--hHHHHHHHHHHHHhhcccC
Q 009975 369 -DKL----GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPH--YLYRMTILRAISLLAPVMG 441 (521)
Q Consensus 369 -~~l----~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~--~~~r~~a~~~l~~l~~~~~ 441 (521)
+.- ...=+..+..+.+-++...++ .-.+.++..|...+.++. ...-.+.+.+++.+++.
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le------------~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~-- 146 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQLE------------AEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQ-- 146 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHHH------------HHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHH--
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHHH------------HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH--
Confidence 000 000000111111111111110 012345555666555543 55556777777777752
Q ss_pred hHHHhhcHHHHHHhhcC
Q 009975 442 SEITCSRLLPVVINASK 458 (521)
Q Consensus 442 ~~~~~~~il~~l~~~l~ 458 (521)
...+...+++.+..+-.
T Consensus 147 RP~~~~~Il~~ll~~~~ 163 (239)
T PF11935_consen 147 RPQFMSRILPALLSFNP 163 (239)
T ss_dssp SGGGHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCc
Confidence 23456677777766543
No 350
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=64.28 E-value=18 Score=35.48 Aligned_cols=107 Identities=9% Similarity=0.113 Sum_probs=65.7
Q ss_pred HHHHHHHhcCCCChHHHHHHHHhHHHHHHhh---CchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhh
Q 009975 98 LRSIYTQLCQDDMPMVRRSAASNLGKFAATV---EPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 174 (521)
Q Consensus 98 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 174 (521)
+.+++.+++++++-.|.--+...+..++-.+ +.......++..+..+....++..|......+..+.-....+...+
T Consensus 432 I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~ 511 (743)
T COG5369 432 IVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFK 511 (743)
T ss_pred hHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhh
Confidence 4455555555544444433333333333222 2234566778888888777777888777777777665554432222
Q ss_pred ----hhHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 009975 175 ----HILPVIVNFSQDKSWRVRYMVANQLYELCE 204 (521)
Q Consensus 175 ----~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~ 204 (521)
.-...+..+++|+.|.|...+.+.+..+..
T Consensus 512 ~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 512 FLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 234567788899999999998888887765
No 351
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=63.07 E-value=51 Score=27.69 Aligned_cols=56 Identities=18% Similarity=0.219 Sum_probs=38.4
Q ss_pred CcHHHHHHHHHHHHHHHH-HhCHHHH--HhhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 009975 382 KVYSIRDAAANNLKRLAE-EFGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLA 437 (521)
Q Consensus 382 ~~~~vr~~a~~~l~~l~~-~~~~~~~--~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~ 437 (521)
.+......++.|+..+.. ..|.+.+ ....+..+...+.+++..+|..+++.+..++
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 455666677777777654 2233332 2567788888888999999999999998775
No 352
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=62.90 E-value=1.1e+02 Score=27.23 Aligned_cols=133 Identities=18% Similarity=0.201 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhcChhh----hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC
Q 009975 133 LKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQD----CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG 207 (521)
Q Consensus 133 ~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~ 207 (521)
+--.+.|++..-.+.. .+..|..+..+++.+.+.-.++. ...+++|+..+..+..+..-|..|.-.+.++...
T Consensus 92 iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~d-- 169 (262)
T PF04078_consen 92 IPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLD-- 169 (262)
T ss_dssp GGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHS--
T ss_pred chhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcc--
Confidence 3346778876655543 45789999999999998644442 2356888888888777777777676666666531
Q ss_pred CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC---HHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHc
Q 009975 208 PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSSQHVRSALASVIMG 279 (521)
Q Consensus 208 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~ 279 (521)
+ ..+.-.++. .+--.+....|+.+...+. .....+.++.....+.+++ +.|.+.-.+++.
T Consensus 170 -d-------~GL~yiC~t--~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp--rar~aL~~~LP~ 232 (262)
T PF04078_consen 170 -D-------VGLNYICQT--AERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP--RAREALRQCLPD 232 (262)
T ss_dssp -H-------HHHHHHTSS--HHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST--THHHHHHHHS-G
T ss_pred -h-------hHHHHHhcC--HHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH--HHHHHHHHhCcH
Confidence 0 111112222 2223344455555554431 1233455666666665544 344555555444
No 353
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.54 E-value=38 Score=28.87 Aligned_cols=87 Identities=20% Similarity=0.202 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh--hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccc
Q 009975 135 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR 212 (521)
Q Consensus 135 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~ 212 (521)
...+|.+.+.+.+-+...|..|.+.+..+....++. ...++++.-+...+...+.+|...+.+.+..+....+ ...
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~--~vG 190 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVG--CVG 190 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--ccc
Confidence 456777777777777666666666666555554432 1345566666777777788888888888877765332 122
Q ss_pred cchHHHHHHhc
Q 009975 213 MDLVPAYVRLL 223 (521)
Q Consensus 213 ~~l~~~l~~~l 223 (521)
..++|++.+++
T Consensus 191 ~aLVPfYRQlL 201 (262)
T KOG3961|consen 191 AALVPFYRQLL 201 (262)
T ss_pred hhhhhHHHHhh
Confidence 34555555543
No 354
>KOG1926 consensus Predicted regulator of rRNA gene transcription (MYB-binding protein) [Transcription]
Probab=58.45 E-value=2.9e+02 Score=30.41 Aligned_cols=69 Identities=19% Similarity=0.076 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 009975 95 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG 164 (521)
Q Consensus 95 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~ 164 (521)
-+..+.++..+.++ ++.+|.+++..|-.-.........+.+.+.-+...+.+....+|.+...+++.+.
T Consensus 72 ~k~~ldlf~klas~-l~~~r~~aa~~Ll~~lq~~~~ae~~~YvL~RLIrg~ss~resaRlgfs~~Ltev~ 140 (1129)
T KOG1926|consen 72 IKEKLDLFTKLASS-LRPVRLAAAFQLLADLQELRDAEELSYVLNRLIRGLSSDRESARLGFSLILTEVL 140 (1129)
T ss_pred chHHHHHHHHHHhh-cHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhh
Confidence 45566666666665 6777777776666655555544555566665555555666666666666666554
No 355
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=57.49 E-value=42 Score=23.17 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHH-hCHHHHH-hhhHHHHHhhhc-CcchHHHHHHHHHHHHhhc
Q 009975 387 RDAAANNLKRLAEE-FGPEWAM-QHITPQVLEMIN-NPHYLYRMTILRAISLLAP 438 (521)
Q Consensus 387 r~~a~~~l~~l~~~-~~~~~~~-~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~ 438 (521)
.++++-+++.+... .|..... ..+++.+.++.+ ++.+.+|-++..+++-++.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~ 58 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS 58 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC
Confidence 35667777777543 4555443 367888887654 5678888888888888876
No 356
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=55.82 E-value=94 Score=24.06 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=25.0
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC
Q 009975 369 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 402 (521)
Q Consensus 369 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 402 (521)
..++..+.+-|++.++.|+.-++..|..++..-.
T Consensus 37 ~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~ 70 (122)
T cd03572 37 QELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN 70 (122)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence 4577777777888888888888888877776543
No 357
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=55.14 E-value=1.5e+02 Score=26.20 Aligned_cols=56 Identities=13% Similarity=0.104 Sum_probs=28.6
Q ss_pred CcHHHHHHHHHHHHHHHHHhCHHHH----HhhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 009975 382 KVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLEMINNPHYLYRMTILRAISLLA 437 (521)
Q Consensus 382 ~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~ 437 (521)
+....|.+++..++.+.+.-..+.+ ..+++|.....+...+.--+..|...++.+.
T Consensus 137 ~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 137 PFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKIL 196 (293)
T ss_pred chHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 3444555555555555544332211 2445555555555555555555555555554
No 358
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=54.29 E-value=1.2e+02 Score=24.82 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=9.7
Q ss_pred HHHHHhhcCCChhHHHHHHHH
Q 009975 139 SIFEDLTQDDQDSVRLLAVEG 159 (521)
Q Consensus 139 ~~l~~l~~d~~~~vr~~a~~~ 159 (521)
-.+.+.+-..+...|..|+..
T Consensus 135 lvLRKamf~r~~~~R~~Av~G 155 (158)
T PF14676_consen 135 LVLRKAMFSRELDARQMAVNG 155 (158)
T ss_dssp HHHHHHTT-SSHHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHH
Confidence 333444444445556655544
No 359
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=54.04 E-value=1e+02 Score=26.59 Aligned_cols=70 Identities=10% Similarity=-0.021 Sum_probs=39.1
Q ss_pred hhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh
Q 009975 173 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 245 (521)
Q Consensus 173 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 245 (521)
.+.+++......++.+.-.|+.+.-.. .....++.....+++++...+.|.+.-|+.+.-.+|..++.+.
T Consensus 116 ~~~li~~~~a~~~~~~~w~rraaiv~~---l~~~k~~~~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k~~ 185 (222)
T COG4912 116 WPDLIEEWAADAEEDNRWERRAAIVHQ---LVYKKKTLDLLEIFEIIELLLGDKEFFVQKAIGWALRQIGKHS 185 (222)
T ss_pred CHHHHHHHHhccccchHHHHHHHHHHH---HHHhcCccchhHHHHHHHHHccChHHHHHHHHHHHHHHHHhhc
Confidence 344555554444444444444433321 1223333334467777777777777777777777777777743
No 360
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.93 E-value=1.1e+02 Score=26.35 Aligned_cols=67 Identities=22% Similarity=0.257 Sum_probs=29.8
Q ss_pred hHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH--HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 009975 410 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476 (521)
Q Consensus 410 l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~ 476 (521)
++|.+.+-+.+-+...|-.|-.-+..+....|.+. +.++++..+-..+...+..|...++++|..+.
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv 183 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLV 183 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 34444444433333333344444444444333322 22344444444555555555555555555544
No 361
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=53.55 E-value=1.2e+02 Score=24.72 Aligned_cols=110 Identities=12% Similarity=0.111 Sum_probs=53.4
Q ss_pred HHHhhhHHHHHhhhcCcch------HHHHHHHHHHHHhhcc--cChHHHhhcHHHHHHhhcCCC--CchHHHHHHHHHHH
Q 009975 405 WAMQHITPQVLEMINNPHY------LYRMTILRAISLLAPV--MGSEITCSRLLPVVINASKDR--VPNIKFNVAKVLQS 474 (521)
Q Consensus 405 ~~~~~l~~~l~~~l~~~~~------~~r~~a~~~l~~l~~~--~~~~~~~~~il~~l~~~l~d~--~~~VR~~a~~~l~~ 474 (521)
++...=++.|.++.++... ..-.-++.++..+.++ .+.+.....++..+....+.. ++.|-+.++..|..
T Consensus 7 FI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs 86 (160)
T PF11841_consen 7 FISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILES 86 (160)
T ss_pred HHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHH
Confidence 3333344445555444331 2223345555555553 234444444444444443322 46677777777777
Q ss_pred HHhhhch--HHHH-hhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 009975 475 LIPIVDQ--SMVE-KTIRPCLVELTEDPDVDVRFFATQAIQSI 514 (521)
Q Consensus 475 ~~~~~~~--~~~~-~~~~~~l~~l~~D~~~~vr~~a~~al~~l 514 (521)
++..... ..+. +.-++-|...+.+++++++.+|..-+..+
T Consensus 87 ~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL 129 (160)
T PF11841_consen 87 IVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINAL 129 (160)
T ss_pred HHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7654221 1111 22234444444556666666666555544
No 362
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=52.79 E-value=1.1e+02 Score=24.16 Aligned_cols=102 Identities=7% Similarity=-0.001 Sum_probs=57.8
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchh--hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcC---hhh
Q 009975 97 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH--LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE---PQD 171 (521)
Q Consensus 97 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~---~~~ 171 (521)
..+.++...++.++....+.++..|.+++-.-.... ....-+|++.....++.+.+-.+++-.+..+...-. ++.
T Consensus 58 ~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~el 137 (173)
T KOG4646|consen 58 DVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDEL 137 (173)
T ss_pred hHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHh
Confidence 456777777777777777777777766653211111 122235666667778888777777777766653311 122
Q ss_pred hhhhhHHHHHHhcCCCChHHHHHHHHH
Q 009975 172 CVAHILPVIVNFSQDKSWRVRYMVANQ 198 (521)
Q Consensus 172 ~~~~l~~~l~~~~~d~~~~vR~~~~~~ 198 (521)
..+.++..+.......+...|.-+-..
T Consensus 138 l~p~Vv~~v~r~~~s~s~~~rnLa~~f 164 (173)
T KOG4646|consen 138 LSPAVVRTVQRWRESKSHDERNLASAF 164 (173)
T ss_pred ccHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 334455555555544444444444333
No 363
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=52.08 E-value=1.9e+02 Score=26.57 Aligned_cols=137 Identities=15% Similarity=0.240 Sum_probs=88.9
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHhC---HHHHH---hhhHHH-HHhhhcCcchHHHHHHHHHHHHhhcccChHH---
Q 009975 375 CMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAM---QHITPQ-VLEMINNPHYLYRMTILRAISLLAPVMGSEI--- 444 (521)
Q Consensus 375 l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~---~~l~~~-l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~--- 444 (521)
+..+.+-++.++-.-|+.....+...-. .+++. +..++. ...++++.|+-.|-.+...+|.+...-....
T Consensus 171 FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~ 250 (342)
T KOG1566|consen 171 FFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMT 250 (342)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHH
Confidence 3455566666666666666555543221 11111 223444 4557889999999999999999885322211
Q ss_pred -Hh--hcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH-H-------HHhhHHHHHHHhcCCCCccHHHHHHHHH
Q 009975 445 -TC--SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-M-------VEKTIRPCLVELTEDPDVDVRFFATQAI 511 (521)
Q Consensus 445 -~~--~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~-~-------~~~~~~~~l~~l~~D~~~~vr~~a~~al 511 (521)
|. +.-+..+..++.|+..+++..|......+...-..+ . ..+.++..+..+..|.-++.++...+++
T Consensus 251 kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KLl~~l~~f~~d~~~DeqF~dEk~~ 328 (342)
T KOG1566|consen 251 KYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKLLELLHDFHTDRTEDEQFLDEKAY 328 (342)
T ss_pred HHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHHHHHHHHhCCCCCchhhhhhhHHH
Confidence 21 356678888999999999999999988877543221 1 1266777777788888777777766653
No 364
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=49.59 E-value=1.7e+02 Score=25.27 Aligned_cols=96 Identities=15% Similarity=0.024 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhh
Q 009975 95 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 174 (521)
Q Consensus 95 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 174 (521)
.+.+++.+....++.+.-.|+.+.-..-. ...+......+.+++..++.|..+.|+.+..-+|..++.+.++ ...
T Consensus 116 ~~~li~~~~a~~~~~~~w~rraaiv~~l~---~~k~~~~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k~~~e--~~~ 190 (222)
T COG4912 116 WPDLIEEWAADAEEDNRWERRAAIVHQLV---YKKKTLDLLEIFEIIELLLGDKEFFVQKAIGWALRQIGKHSNE--LWV 190 (222)
T ss_pred CHHHHHHHHhccccchHHHHHHHHHHHHH---HhcCccchhHHHHHHHHHccChHHHHHHHHHHHHHHHHhhchH--HHH
Confidence 45677777555566556666665543333 2233344557899999999999999999999999999995332 333
Q ss_pred hhHHHHHHhcCCCChHHHHHH
Q 009975 175 HILPVIVNFSQDKSWRVRYMV 195 (521)
Q Consensus 175 ~l~~~l~~~~~d~~~~vR~~~ 195 (521)
..+..-..+..-+....|...
T Consensus 191 ~a~~~~~~la~ls~r~a~~~~ 211 (222)
T COG4912 191 RAFANAHDLAPLSDREARKNL 211 (222)
T ss_pred HHHHHHhhccccchhhHhhhc
Confidence 333333344433343444433
No 365
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.30 E-value=2.3e+02 Score=26.40 Aligned_cols=143 Identities=11% Similarity=0.111 Sum_probs=82.4
Q ss_pred HHHHHHHcCC-CcHHHHHHHHHHHHHHHHHhCHHHHH-----hhhHHHHHhhh--cCcchHHHHHHHHHHHHhhcccC--
Q 009975 372 GALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWAM-----QHITPQVLEMI--NNPHYLYRMTILRAISLLAPVMG-- 441 (521)
Q Consensus 372 ~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~-----~~l~~~l~~~l--~~~~~~~r~~a~~~l~~l~~~~~-- 441 (521)
+..++.++.| ++..+|..+-.++..+-...|.+... +.-.+.+...+ ...++.+-+.++.+++.++-..+
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdh 364 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDH 364 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcch
Confidence 3456677777 55667767666776666666655432 33344444432 23456777777777777764322
Q ss_pred -hHHHhhcHHHHHHhhcC-CC-CchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 009975 442 -SEITCSRLLPVVINASK-DR-VPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 514 (521)
Q Consensus 442 -~~~~~~~il~~l~~~l~-d~-~~~VR~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l 514 (521)
...+..-.-...++.++ .| ...|..++++.+..+..+.... .+...=...|.+...-..+.++..|..|+..|
T Consensus 365 sa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 365 SAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred HHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 22233334445555443 33 4568899999999988653221 12222233444445556677788888887765
No 366
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=47.49 E-value=44 Score=25.55 Aligned_cols=29 Identities=7% Similarity=-0.009 Sum_probs=16.8
Q ss_pred hHHHHHhhhcCcchHHHHHHHHHHHHhhc
Q 009975 410 ITPQVLEMINNPHYLYRMTILRAISLLAP 438 (521)
Q Consensus 410 l~~~l~~~l~~~~~~~r~~a~~~l~~l~~ 438 (521)
.++.|..-+.|++..++..|+..+...+.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~ 37 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACE 37 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 45555555666666666666666555554
No 367
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=46.93 E-value=1.8e+02 Score=24.70 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=18.8
Q ss_pred HhHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 009975 291 EQLLPIFLSLLKDEFPDVRLNIISKLDQVN 320 (521)
Q Consensus 291 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 320 (521)
..++..+.+...+.-+.||..|..++..+.
T Consensus 6 ~~~~~~llrqa~EKiDrvR~~A~~~l~~ll 35 (193)
T PF12612_consen 6 QQIIGGLLRQAAEKIDRVREVAGKCLQRLL 35 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555677777777777776
No 368
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.79 E-value=4e+02 Score=28.43 Aligned_cols=113 Identities=14% Similarity=0.069 Sum_probs=74.9
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHh
Q 009975 213 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ 292 (521)
Q Consensus 213 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~ 292 (521)
.-..-.+.+.++.+.+.-+-.+...+.++.+..+...+.+...--+...+.+.+-..|-+.+....+-.+.+.+-....+
T Consensus 23 ~a~~~~ldkGlr~~~t~eqpeavvr~~RLFek~PfpifiNs~llrLaDaF~~Gn~llRf~V~rv~~q~g~hln~v~n~aE 102 (970)
T KOG1988|consen 23 NAVLMELDKGLRSGKTSEQPEAVVRFPRLFEKYPFPIFINSQLLRLADAFPVGNNLLRFAVLRVDQQSGKHLNKVLNGAE 102 (970)
T ss_pred hHHHHHHhhcccccccccchHHHHHHHHHHhhCCchhhhhHHHHHHHHHhccCcHHHHHHHHHHHhhccccchhhhhhhh
Confidence 34555566666665555555666667777666655555555555556666777778888888888766656655444455
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch
Q 009975 293 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 325 (521)
Q Consensus 293 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 325 (521)
++..+.......|+.-|..++..++.+...++.
T Consensus 103 ~lrri~~V~hsnDp~aRAllL~ilg~~s~lipE 135 (970)
T KOG1988|consen 103 FLRRIFYVDHSNDPVARALLLRILGQLSALIPE 135 (970)
T ss_pred hhheeEEeecCCCHHHHHHHHHHHHHhhhhccc
Confidence 666666667778888888888888877665543
No 369
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=45.50 E-value=70 Score=29.33 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=23.4
Q ss_pred HHHHhHHHHHHhhCch---hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 009975 116 SAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG 164 (521)
Q Consensus 116 ~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~ 164 (521)
.|+.-++.+++..++. ......-..+..+++.+++.||..|++++..+.
T Consensus 376 vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 376 VACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred eeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 3444445554444431 122233344445555566666666666555443
No 370
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=44.52 E-value=3.3e+02 Score=27.04 Aligned_cols=95 Identities=12% Similarity=0.114 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh---
Q 009975 94 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--- 170 (521)
Q Consensus 94 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--- 170 (521)
.-.++..++..-+..-.+..|...+.+|.-+... .......++.++..+..-.+...|..+..-+.....++...
T Consensus 17 FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk--~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn 94 (616)
T KOG2229|consen 17 FPSELKDLLRTNHTVLPPELREKIVKALILLRNK--NLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKN 94 (616)
T ss_pred hhHHHHHHHHhccccCCHHHHHHHHHHHHHHhcc--CcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccc
Confidence 3455666666555555788999998888776532 12234567777777777777777887776666665543321
Q ss_pred -hhhhhhHHHHHHhcCCCChH
Q 009975 171 -DCVAHILPVIVNFSQDKSWR 190 (521)
Q Consensus 171 -~~~~~l~~~l~~~~~d~~~~ 190 (521)
..-..+-.++..++.++++.
T Consensus 95 ~klnkslq~~~fsml~~~d~~ 115 (616)
T KOG2229|consen 95 DKLNKSLQAFMFSMLDQSDST 115 (616)
T ss_pred chHHHHHHHHHHHHHhCCCch
Confidence 12223445556666666654
No 371
>COG2733 Predicted membrane protein [Function unknown]
Probab=43.16 E-value=3e+02 Score=26.22 Aligned_cols=24 Identities=13% Similarity=0.204 Sum_probs=17.3
Q ss_pred hhcCcchHHHHHHHHHHHHhhccc
Q 009975 417 MINNPHYLYRMTILRAISLLAPVM 440 (521)
Q Consensus 417 ~l~~~~~~~r~~a~~~l~~l~~~~ 440 (521)
=.+++++.+|.....++..+.+.+
T Consensus 309 D~e~~~s~l~~~l~~~~~~~Ge~l 332 (415)
T COG2733 309 DYESEDSMLRKRLARAVQSVGEEL 332 (415)
T ss_pred cccCchhHHHHHHHHHHHHHHHHH
Confidence 346677888888888877777654
No 372
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.94 E-value=4e+02 Score=27.60 Aligned_cols=234 Identities=14% Similarity=0.166 Sum_probs=117.9
Q ss_pred HHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhc-CCCCcch-hhhhhhhhhhcCC--CChHHHHHHH
Q 009975 24 PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA-GEWFTAR-VSACGLFHIAYPS--APDILKTELR 99 (521)
Q Consensus 24 ~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~-~~~~~~r-~~~~~~~~~~~~~--~~~~~~~~l~ 99 (521)
+.+++-.+.|+.-|..|.+++..+.+. |+-+ ...+-+.+ ++.+... .++..++.....+ +|-..+-++.
T Consensus 10 lCk~LY~s~D~~~R~~AE~~L~e~s~s--pecl-----skCqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~qrldir 82 (1082)
T KOG1410|consen 10 LCKDLYESTDPTARHRAEKALAELSES--PECL-----SKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLEQRLDIR 82 (1082)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHccC--HHHH-----HHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Confidence 345566788999999999999998873 3322 22222222 3322222 3333333333322 2333455666
Q ss_pred HHHHHhcCCCChHHHHHHHHhHHHHHHhhCc---------hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh-
Q 009975 100 SIYTQLCQDDMPMVRRSAASNLGKFAATVEP---------AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP- 169 (521)
Q Consensus 100 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~---------~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~- 169 (521)
..+.+.+....|........+|..+...+.+ +......+.-..+.++..+...-..++.++..+...+..
T Consensus 83 ~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqemN~~ 162 (1082)
T KOG1410|consen 83 NYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEMNQA 162 (1082)
T ss_pred HHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHHhhCC
Confidence 7777666554455444444444444333221 123344555566666666666666677777777654321
Q ss_pred -----------------hhhhhhhHHHHHHhcCCCC-----hHHHHHHHHHHHHHHH------HhCCC------------
Q 009975 170 -----------------QDCVAHILPVIVNFSQDKS-----WRVRYMVANQLYELCE------AVGPE------------ 209 (521)
Q Consensus 170 -----------------~~~~~~l~~~l~~~~~d~~-----~~vR~~~~~~l~~i~~------~~~~~------------ 209 (521)
+...-+++.+-...+++.. .+.........-++.- .+|..
T Consensus 163 ~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEssed~ctVQ 242 (1082)
T KOG1410|consen 163 DGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDESSEDLCTVQ 242 (1082)
T ss_pred CCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccccccccccccccee
Confidence 1122224443333333211 1111111111111111 11210
Q ss_pred --------ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh-----C--HHHHHHhhhHHHHHhccC
Q 009975 210 --------PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-----N--PELAIQHILPCVKELSSD 264 (521)
Q Consensus 210 --------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-----~--~~~~~~~~~~~l~~~~~d 264 (521)
...+..+..+..+...-.++.-..|+.++..++..- + +..+...++.-++..+++
T Consensus 243 IPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~il~n 312 (1082)
T KOG1410|consen 243 IPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRILEN 312 (1082)
T ss_pred cCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 112457777888877777777788888888777643 1 224555566666555543
No 373
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=42.16 E-value=2e+02 Score=23.73 Aligned_cols=71 Identities=11% Similarity=0.184 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHh-hhcCcc--hHHHHHHHHHHHHhhc
Q 009975 368 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLE-MINNPH--YLYRMTILRAISLLAP 438 (521)
Q Consensus 368 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~-~l~~~~--~~~r~~a~~~l~~l~~ 438 (521)
.+++.|.+.+.+..++..+-..++..+..+...++... ..+.+++.+.. .+.+++ +..|..+++++..++.
T Consensus 71 k~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 71 KDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 35566777766665567777777777777776665432 12344555544 444333 4577888888888775
No 374
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=41.65 E-value=2e+02 Score=23.60 Aligned_cols=61 Identities=8% Similarity=-0.002 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHHHHHHHhCH--HHH-HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChH
Q 009975 383 VYSIRDAAANNLKRLAEEFGP--EWA-MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 443 (521)
Q Consensus 383 ~~~vr~~a~~~l~~l~~~~~~--~~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~ 443 (521)
+..+-+.++..|..++..... ... .+.-++.|...+.+++..++..++..+.++....+++
T Consensus 73 d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 73 DASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 567777888888877642211 112 2334777888888888899998888888887655543
No 375
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=41.23 E-value=65 Score=24.63 Aligned_cols=35 Identities=26% Similarity=0.146 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 009975 366 FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 400 (521)
Q Consensus 366 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 400 (521)
.+....++++.+-+.|++.+|...|++.|...+..
T Consensus 4 ~f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~ 38 (115)
T PF14663_consen 4 DFEDWGIELLVTQLYDPSPEVVAAALEILEEACED 38 (115)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 35677888999999999999999999998887753
No 376
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.10 E-value=6.3e+02 Score=29.28 Aligned_cols=74 Identities=16% Similarity=0.284 Sum_probs=62.2
Q ss_pred cHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHH--HhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhccC
Q 009975 448 RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV--EKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 521 (521)
Q Consensus 448 ~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~--~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~~~ 521 (521)
.+...++....|...++|..|+..+..++...|..+. .++.+|.+.++..|.+..|-..+...+..+.+.+|.+
T Consensus 1541 pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~ 1616 (1621)
T KOG1837|consen 1541 PLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEP 1616 (1621)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchh
Confidence 3444455556777889999999999999999988754 4899999999999999999999999999998888753
No 377
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=40.87 E-value=1.5e+02 Score=22.07 Aligned_cols=37 Identities=19% Similarity=0.006 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHH
Q 009975 368 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 404 (521)
Q Consensus 368 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 404 (521)
.+.++..+...+..-.++||..+.+.+.-+.+.++..
T Consensus 9 ~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 9 FPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH
Confidence 3445555566677777888888888888777777654
No 378
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=40.24 E-value=57 Score=18.79 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=21.3
Q ss_pred HHHHHHH-hcCCCCccHHHHHHHHHHHHHH
Q 009975 488 IRPCLVE-LTEDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 488 ~~~~l~~-l~~D~~~~vr~~a~~al~~l~~ 516 (521)
+...|.. -.+|+|.-||..|..+++.|..
T Consensus 6 l~r~Lk~V~~~D~D~lvr~hA~~~Le~Le~ 35 (36)
T PF10304_consen 6 LYRTLKYVESTDNDDLVREHAQDALEELEA 35 (36)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHhc
Confidence 3333443 2579999999999999998864
No 379
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=39.10 E-value=5.1e+02 Score=27.68 Aligned_cols=112 Identities=16% Similarity=0.145 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHh---hCchhh----HHHHHHHHHHhhcCC--ChhHHHHHHHHHHHHhhh
Q 009975 96 TELRSIYTQLCQDDMPMVRRSAASNLGKFAAT---VEPAHL----KTDIMSIFEDLTQDD--QDSVRLLAVEGCAALGKL 166 (521)
Q Consensus 96 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~---~~~~~~----~~~l~~~l~~l~~d~--~~~vr~~a~~~l~~l~~~ 166 (521)
+.++|-+..++-++++..|+-|...+..+.+. +..+.+ .+.+...+... +.. ++..-..-=..+..+.+.
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ 197 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRL 197 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHH
Confidence 56777777778888999999999999998764 333333 34444555444 211 121111112233333444
Q ss_pred cChhhhhhh--------hHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCC
Q 009975 167 LEPQDCVAH--------ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP 208 (521)
Q Consensus 167 ~~~~~~~~~--------l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~ 208 (521)
++++..... +..++...+.+.....-....+++..+.+..+.
T Consensus 198 ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~ 247 (727)
T PF12726_consen 198 LDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGS 247 (727)
T ss_pred ccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHH
Confidence 444422221 344555555554233445566777777776654
No 380
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=39.09 E-value=4.9e+02 Score=27.44 Aligned_cols=146 Identities=15% Similarity=0.104 Sum_probs=84.9
Q ss_pred hhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHHHHh
Q 009975 26 ETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQL 105 (521)
Q Consensus 26 ~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 105 (521)
..++.+.|..+.+.+-..+.+....--. ..++..+....-... -..+..++ +..-.+ .-+.++..+...
T Consensus 10 ~~~l~s~~~~~~~~~~~~~~~~~~~~~~----~~l~~~l~~y~~~t~---s~~~~~il---~~~~~P-~~K~~~~~l~~~ 78 (668)
T PF04388_consen 10 LSLLESNDLSVLEEIKALLQELLNSDRE----PWLVNGLVDYYLSTN---SQRALEIL---VGVQEP-HDKHLFDKLNDY 78 (668)
T ss_pred HHHhcCCchhhHHHHHHHHHHHhhccch----HHHHHHHHHHHhhcC---cHHHHHHH---HhcCCc-cHHHHHHHHHHH
Confidence 3444566666677666666665554221 233333322111111 01122222 211122 246788888887
Q ss_pred cCCCChHHHHHHHHhHHHHHHhhCch---hhH-HHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh--hhhhhhHHH
Q 009975 106 CQDDMPMVRRSAASNLGKFAATVEPA---HLK-TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPV 179 (521)
Q Consensus 106 ~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~-~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~ 179 (521)
... +.-|..++..|+.++..-+.- ... +-+-.++..+..|.+..+-..|+.+|..+...++.. ...+.++.+
T Consensus 79 ~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~I 156 (668)
T PF04388_consen 79 FVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNI 156 (668)
T ss_pred HcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHH
Confidence 764 578889999999998765542 122 334445555667888899999999999999998753 345566666
Q ss_pred HHHhc
Q 009975 180 IVNFS 184 (521)
Q Consensus 180 l~~~~ 184 (521)
+..++
T Consensus 157 f~Rl~ 161 (668)
T PF04388_consen 157 FGRLL 161 (668)
T ss_pred HHHHH
Confidence 66654
No 381
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=38.61 E-value=55 Score=24.48 Aligned_cols=26 Identities=27% Similarity=0.198 Sum_probs=17.4
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhh
Q 009975 296 IFLSLLKDEFPDVRLNIISKLDQVNQ 321 (521)
Q Consensus 296 ~l~~~l~d~~~~vr~~a~~~l~~~~~ 321 (521)
.+..+++++++.||..|+...-.+.+
T Consensus 51 aLl~LL~hpn~~VRl~AA~~~L~~~p 76 (106)
T PF09450_consen 51 ALLPLLKHPNMQVRLWAAAHTLRYAP 76 (106)
T ss_dssp GGGGGGGSS-HHHHHHHHHTTTTT-H
T ss_pred HHHHHHcCCChhHHHHHHHHHHHhCH
Confidence 45567888889999888776655443
No 382
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.55 E-value=7.1e+02 Score=28.89 Aligned_cols=92 Identities=10% Similarity=0.192 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH--HhhcHHHHHHhhcCCCCchHH
Q 009975 388 DAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIK 465 (521)
Q Consensus 388 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~VR 465 (521)
..++.+++.+....+.+ ...+...++....+++.+.|..|+..+..+...+|..+ ..+..+|++-.++.|.+..|.
T Consensus 1522 ~~li~~i~~~~~a~~~d--~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve 1599 (1621)
T KOG1837|consen 1522 KLLIAEIASDSVADKDD--LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVE 1599 (1621)
T ss_pred HHHHHHHHhhccCChhh--hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHH
Confidence 33444444443333333 22344444555667788999999999999999999876 358899999999999999999
Q ss_pred HHHHHHHHHHHhhhch
Q 009975 466 FNVAKVLQSLIPIVDQ 481 (521)
Q Consensus 466 ~~a~~~l~~~~~~~~~ 481 (521)
..+...+..+=+.+|.
T Consensus 1600 ~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1600 CLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred HHHHHHHHHHHHHhch
Confidence 8888877777666665
No 383
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=37.36 E-value=1.9e+02 Score=26.88 Aligned_cols=168 Identities=13% Similarity=0.016 Sum_probs=71.9
Q ss_pred ChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCC-hHHHHHHHHHhHHHHhhhChhhhHHHHHHHH-HHHcCCC
Q 009975 305 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLGVGFFDDKLGALC-MQWLQDK 382 (521)
Q Consensus 305 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l-~~~l~d~ 382 (521)
...+|.+|+.++..+...= +.....++..+.....+.+ ......++..+-..-.....+.+..++--.+ ..++.|
T Consensus 51 ~f~lR~AA~~c~kay~~~N--~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~d- 127 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNN--EEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRD- 127 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT---HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-
T ss_pred chHHHHHHHHHHHHHHhcC--HHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhc-
Confidence 6788999999998876421 1111112221111111111 0111113333322222223344444443333 344555
Q ss_pred cHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhh----c-CcchHHHHHHHHHHHHhhcccChH--HHh--hcHHHHH
Q 009975 383 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI----N-NPHYLYRMTILRAISLLAPVMGSE--ITC--SRLLPVV 453 (521)
Q Consensus 383 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~-~~~~~~r~~a~~~l~~l~~~~~~~--~~~--~~il~~l 453 (521)
+..-|+.+.+. ......-|.+ ...+++.+...+ . +.+.+++...+..+....-..... .|. ...++.+
T Consensus 128 n~~~Ke~al~V-~~~~~~~ge~--~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~L 204 (312)
T PF04869_consen 128 NPEAKEQALRV-TEGDESSGEE--PVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSL 204 (312)
T ss_dssp -HHHHHHHTT---EE--STTS----EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHH
T ss_pred CHHHHHHHHcc-cCCCCCCCCC--cccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHH
Confidence 33445554443 1011111221 223455555432 2 557888988888888776533321 222 2355666
Q ss_pred Hhh---cCCCCchHHHHHHHHHHHHHhh
Q 009975 454 INA---SKDRVPNIKFNVAKVLQSLIPI 478 (521)
Q Consensus 454 ~~~---l~d~~~~VR~~a~~~l~~~~~~ 478 (521)
+.. -.+.+.-|+--++-.||...+.
T Consensus 205 i~~~~~~~~~~~~VqGL~A~LLGicyef 232 (312)
T PF04869_consen 205 IEFSNQSSSEDVLVQGLCAFLLGICYEF 232 (312)
T ss_dssp HHHHS--TCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHhhcCCCCcchHHHHHHHHHHHHHHh
Confidence 553 3445667787788888887763
No 384
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=37.22 E-value=3.5e+02 Score=25.21 Aligned_cols=157 Identities=10% Similarity=0.071 Sum_probs=70.4
Q ss_pred hhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHHHHhcC
Q 009975 28 LCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQ 107 (521)
Q Consensus 28 l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 107 (521)
+...+++. -...+.++..++...++++..+.+..++.++.+..+. ..+..+-.++.-+.+...
T Consensus 55 ~~k~~ekd-le~vlnsi~sLi~~~~~e~~e~~v~a~~ekva~q~n~----------------~~~~l~L~vLsnLfn~~d 117 (378)
T KOG2753|consen 55 LAKIPEKD-LECVLNSIVSLIKNAPPEKVEEMVKAICEKVAKQPND----------------KTASLRLQVLSNLFNGVD 117 (378)
T ss_pred hhcCCcch-HHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHhcCccC----------------CCcccHHHHHHHHHhccC
Confidence 33444444 4455556666666666666655555555555443221 111122333334444444
Q ss_pred CCChHHHHHHHHhHHHHHHhhCc-hh---hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHh-hhcChhhhhhhhHHHHHH
Q 009975 108 DDMPMVRRSAASNLGKFAATVEP-AH---LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG-KLLEPQDCVAHILPVIVN 182 (521)
Q Consensus 108 ~~~~~vr~~a~~~l~~l~~~~~~-~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~-~~~~~~~~~~~l~~~l~~ 182 (521)
.+.| +|..+...+-.++...+- .. -.+.+-..+.+.-- +....|.. ..++.... ..-.-+...+.+..++-.
T Consensus 118 ~~~~-aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew~~-~vedqrel-~r~v~~al~~~k~~~~s~kvmt~lLgt 194 (378)
T KOG2753|consen 118 KPTP-ARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEWNI-SVEDQREL-LRAVHKALKDNKSVDESSKVMTELLGT 194 (378)
T ss_pred CCch-HHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHhCCC-CHHHHHHH-HHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 4444 888777777777655432 01 11122222222111 11122222 11111111 111112233344455555
Q ss_pred hcCCCChHHHHHHHHHHHHHHH
Q 009975 183 FSQDKSWRVRYMVANQLYELCE 204 (521)
Q Consensus 183 ~~~d~~~~vR~~~~~~l~~i~~ 204 (521)
...|.-...|..+.+++.+...
T Consensus 195 yt~dnas~AredA~rcV~~av~ 216 (378)
T KOG2753|consen 195 YTEDNASEAREDAMRCVVEAVK 216 (378)
T ss_pred hcccchhHHHHHHHHHHHHHHc
Confidence 5555556778888887766553
No 385
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.66 E-value=1.7e+02 Score=27.63 Aligned_cols=61 Identities=10% Similarity=0.098 Sum_probs=30.0
Q ss_pred HHhhhcCcchHHHHHHHHHHHHhhcccC-hHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHH
Q 009975 414 VLEMINNPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 474 (521)
Q Consensus 414 l~~~l~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~ 474 (521)
+....++++..-|.-+...++.....-+ ...-...+.+.+..++.|..+.||..++.+|+.
T Consensus 12 ~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~ 73 (364)
T COG5330 12 LIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQ 73 (364)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHh
Confidence 3344455554444444444444433222 222234455555556666666666666666654
No 386
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.19 E-value=4.8e+02 Score=26.27 Aligned_cols=75 Identities=12% Similarity=0.102 Sum_probs=52.4
Q ss_pred HHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975 399 EEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 399 ~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~ 477 (521)
-.+|.+...+..+..+...+.-.+..+|...--+.+-+.. ..-+..++..+-+...|.+.+|-.+++.+++.+.-
T Consensus 631 iamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~----SnPQm~vfDtL~r~shd~dl~v~~ntIfamGLiGA 705 (881)
T COG5110 631 IAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSP----SNPQMNVFDTLERSSHDGDLNVIINTIFAMGLIGA 705 (881)
T ss_pred hhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccC----CCcchHHHHHHHHhccccchhHHHHHHHHhhcccc
Confidence 3557665556566666666666778888877777776654 22235677788888889998998888888877643
No 387
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=34.91 E-value=2.6e+02 Score=23.01 Aligned_cols=72 Identities=15% Similarity=0.119 Sum_probs=47.8
Q ss_pred HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH--HhhcHHHHHHh-hcCCCC--chHHHHHHHHHHHHHhh
Q 009975 407 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVIN-ASKDRV--PNIKFNVAKVLQSLIPI 478 (521)
Q Consensus 407 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~-~l~d~~--~~VR~~a~~~l~~~~~~ 478 (521)
.+.+.+.+...+.+++..+-..+++.+..+...++... -.+.+++.++. .++.+. ..-|..+++++..++..
T Consensus 71 k~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 71 KDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 45677777777666667777788888888887555321 12455665555 444333 35788899999888863
No 388
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=34.42 E-value=6.9e+02 Score=27.83 Aligned_cols=151 Identities=14% Similarity=0.175 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhhhcCh-------hhhhhhhHHHHHHhc-CCCChHHHHHHHHHHHHHHHHhC--CCccccchHHHHHHh
Q 009975 153 RLLAVEGCAALGKLLEP-------QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRL 222 (521)
Q Consensus 153 r~~a~~~l~~l~~~~~~-------~~~~~~l~~~l~~~~-~d~~~~vR~~~~~~l~~i~~~~~--~~~~~~~l~~~l~~~ 222 (521)
-..+..+|.++.+..++ +...--.++++...+ ...++.+...+.+.+.......+ .+......+..+.++
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~l 1821 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTL 1821 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHH
Confidence 34567777777666542 211112344444433 45677788888777654432211 122223466667777
Q ss_pred cCCChHHHHHHHHHhHHHHHhhh--CHHHHHH-hhhHHHHHhccCCcHHHHHHHHHHHHcccc--ccChHH---HHHhHH
Q 009975 223 LRDNEAEVRIAAAGKVTKFCRIL--NPELAIQ-HILPCVKELSSDSSQHVRSALASVIMGMAP--LLGKDA---TIEQLL 294 (521)
Q Consensus 223 l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~-~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~--~~~~~~---~~~~l~ 294 (521)
+.+ .+..|..+++.|..+.... +.+.... .++..+.-++...+..+|..+++.++++.. ..|+.. ....+-
T Consensus 1822 LHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP 1900 (2235)
T KOG1789|consen 1822 LHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLP 1900 (2235)
T ss_pred Hhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhch
Confidence 765 4789999999998877642 1222111 122333344667788999999999998742 234432 122333
Q ss_pred HHHHHhhcCC
Q 009975 295 PIFLSLLKDE 304 (521)
Q Consensus 295 ~~l~~~l~d~ 304 (521)
..+...+.|.
T Consensus 1901 ~~f~d~~RD~ 1910 (2235)
T KOG1789|consen 1901 EIFADSLRDS 1910 (2235)
T ss_pred HHHHHHHhcC
Confidence 3455666654
No 389
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=33.94 E-value=1.5e+02 Score=21.99 Aligned_cols=54 Identities=11% Similarity=0.013 Sum_probs=39.4
Q ss_pred hhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHH---HHhHHHHHHHhhc
Q 009975 16 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDL---VDWYIPLVKRLAA 69 (521)
Q Consensus 16 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~---~~~l~p~i~~~~~ 69 (521)
+|.+.++..+...+.+=++.||.-+.+.|.-+.+..|++-+ +..+++-...++.
T Consensus 7 p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~ 63 (102)
T PF12333_consen 7 PFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLG 63 (102)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHC
Confidence 35566777777888888899999999999999999987733 2344444444443
No 390
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=33.89 E-value=6.7e+02 Score=27.51 Aligned_cols=446 Identities=12% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHhhcCCCCcchhhhhhhhhhhcC--CCChHHHHHHHHHHHHhcCCC-ChHHHHHHHHhHHHHHHhhCchh--hHHH
Q 009975 62 PLVKRLAAGEWFTARVSACGLFHIAYP--SAPDILKTELRSIYTQLCQDD-MPMVRRSAASNLGKFAATVEPAH--LKTD 136 (521)
Q Consensus 62 p~i~~~~~~~~~~~r~~~~~~~~~~~~--~~~~~~~~~l~~~l~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~~--~~~~ 136 (521)
.+..++..+.....|...+.-++.... +.+++....+.+.+..+++-. ..+.|+.+..-+..++..-++.. ....
T Consensus 30 e~~rel~~e~P~~~R~rmi~~i~~~~k~~~~~e~aI~~lw~~~~DlI~pN~~Ae~R~~vl~l~kR~v~TQ~~~l~I~R~~ 109 (1697)
T KOG3687|consen 30 EILRELSMECPLNNRIRMIGQICEVAKTKKFEEHAIEALWKAVADLIQPNRTAEARHAVLALLKRIVQTQGERLGILRAL 109 (1697)
T ss_pred HHHhhcCccCcHHHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchH
Q 009975 137 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV 216 (521)
Q Consensus 137 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~ 216 (521)
+...+.+--..++-..|...+++|..=+..+.. ..+.+-+++.....-- .-......+.++.+.-+.......+.
T Consensus 110 FF~vI~~~p~~edL~~rLe~L~~LTDnG~~It~--~Ee~iG~f~l~W~~~~---l~~~~L~~lvnl~kfn~~~lD~~i~~ 184 (1697)
T KOG3687|consen 110 FFKVIKDYPSNEDLHERLEVLKALTDNGRHITY--LEEELGDFVLQWMDVG---LSSEFLLVLVNLVKFNSCYLDEYIAR 184 (1697)
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHhhCCccccc--hHHHHHHHHHHHHHhh---cccHHHHHHHHHHHhcccchhHHHHH
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHhhhC----HHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHh
Q 009975 217 PAYVRLLRDNEAEVRIAAAGKVTKFCRILN----PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ 292 (521)
Q Consensus 217 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~ 292 (521)
-.+...+.--...+-...+++|..+-..++ ++.-..+++..+....+ +...+-.++.-+-..+|... -..
T Consensus 185 l~vq~~c~lc~~t~~~i~~~~l~~l~~v~~y~~~P~e~lpQ~I~tlcrt~n-----v~~~C~~~~k~m~nllgthl-g~~ 258 (1697)
T KOG3687|consen 185 LMVQMICLLCVRTASSVDIEVLQVLDAVVCYNCLPAESLPQFIVTLCRTIN-----VKELCEPCWKLMRNLLGTHL-GHS 258 (1697)
T ss_pred HHHHHHHHHHHhhccccchhhhhhhhhheeeeecccchHHHHHHHHhcccc-----hhhcCchHHHHHHhhhhccc-chH
Q ss_pred HHHHHHHhhcC----CChHHHHHHHHHHHHh----hhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh
Q 009975 293 LLPIFLSLLKD----EFPDVRLNIISKLDQV----NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 364 (521)
Q Consensus 293 l~~~l~~~l~d----~~~~vr~~a~~~l~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~ 364 (521)
-+-.+..+++| ++...-++|.-.++.- ...+........++|.+...+.+++.-|+..++-.+..+.+....
T Consensus 259 ~~~~mc~~~~drA~~eDa~llrgavf~~~m~~~g~~~~~~~~~~~T~v~~~fL~a~DS~~~iV~yeVIlsi~~~i~k~~l 338 (1697)
T KOG3687|consen 259 AIYNMCHLMEDRAYMEDAPLLRGAVFFVGMALWGAHRLYSLRNSPTSVFPSFLQAMDSPNEVVSYEVILSITRLIKKYEL 338 (1697)
T ss_pred HHHHHHhhhhhhhhhccchhhcchhhhcchhhcccceeeeecccchhhHHHHHHHhcCccceEEEEEeehhhHHHHHHHH
Q ss_pred -hhhHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHHHHHhCHHHH--HhhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 009975 365 -GFFDDKLGALCMQWLQD----KVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLA 437 (521)
Q Consensus 365 -~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~ 437 (521)
....+.++.++-.+++. ..+..|..--..+..+-+.+..+.+ ..+-+-.+.+...|..+.--.-++---..=.
T Consensus 339 ~~~~wD~il~i~S~~vS~~~Y~~~~~l~~iFh~~~~~ve~L~~qn~~~g~~er~~~lier~ad~rpe~sVlnli~Yr~~~ 418 (1697)
T KOG3687|consen 339 QVVAWDILLNIISRLLSQLQYLDSPELRTIFHDLLTTVEELCDQNEFHGSQERYFELVERCADQRPESSVLNLISYRAQS 418 (1697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcchhhhhHHHhhhhHHHHHHhhhhhcchHHHHHHHHHHhhhcCchHHHHHHHHHhhhc
Q ss_pred cccChHHHhhcHHHHHHhhcC-CCCchHHHHHHHHHHHHH----hhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHH
Q 009975 438 PVMGSEITCSRLLPVVINASK-DRVPNIKFNVAKVLQSLI----PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQ 512 (521)
Q Consensus 438 ~~~~~~~~~~~il~~l~~~l~-d~~~~VR~~a~~~l~~~~----~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~ 512 (521)
-+...+.+.+.+-..+.+..+ +....||.....++..+. +.++.+.....++-.+....-|.+-.||..++.++-
T Consensus 419 V~A~R~gwiq~l~~lm~r~~r~~s~~~Vrik~~~~l~~~~l~nr~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~ 498 (1697)
T KOG3687|consen 419 VHAARDGWIQNLQALMERFFRSESRGAVRIKVLDVLSFVLLINRQFYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLV 498 (1697)
T ss_pred cCcCCchHHHHHHHHHHHHHHhcccceEEEeeHHHHHHHHhhhhhhhHHHhhhheeeEeeccccccchhHHHHHHHHHHH
Q ss_pred HHHHhh
Q 009975 513 SIDHVM 518 (521)
Q Consensus 513 ~l~~~~ 518 (521)
.+...+
T Consensus 499 N~a~~C 504 (1697)
T KOG3687|consen 499 NLAEGC 504 (1697)
T ss_pred HHHhhc
No 391
>COG2733 Predicted membrane protein [Function unknown]
Probab=33.27 E-value=4.4e+02 Score=25.21 Aligned_cols=89 Identities=16% Similarity=0.130 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHH
Q 009975 151 SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEV 230 (521)
Q Consensus 151 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~v 230 (521)
.+-....+.+.++.+.+.++.....+-..+.+.+....+. ..+...|..+...-+.+...++++..+.+.+.++ .+
T Consensus 126 ~v~~~t~~l~~~~~~lld~~~iq~~ik~~v~~~i~e~~~~--~~~~~vL~~l~~d~r~q~l~D~~~~~L~r~~~~~--~v 201 (415)
T COG2733 126 RVSQETLKLLSQLLELLDDDDIQRVIKRAVIRAIAEVYLG--PTAGRVLESLTADDRHQALLDKLIDRLIRWLLND--KV 201 (415)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhccccc--chHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh--hh
Confidence 4444555666666666666555555555555554433322 1233333334333333333345555555555443 45
Q ss_pred HHHHHHhHHHHHh
Q 009975 231 RIAAAGKVTKFCR 243 (521)
Q Consensus 231 r~~a~~~l~~l~~ 243 (521)
++.+...+....+
T Consensus 202 ~~~i~~~i~r~~~ 214 (415)
T COG2733 202 REFIAAVIVRYLE 214 (415)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 392
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.99 E-value=3.8e+02 Score=25.88 Aligned_cols=64 Identities=13% Similarity=-0.092 Sum_probs=32.8
Q ss_pred cCCChHHHHHHHHHhHHHHhhhChhhhHHHHH-HHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHH
Q 009975 341 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG-ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 404 (521)
Q Consensus 341 ~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~-~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 404 (521)
...++..+..-.+++..+++.+.++.-...+- .++-+-++.+..+--..|+.+|....+.+|..
T Consensus 15 rATdp~~~eedw~ai~~fceqinkdp~gp~lAv~LlaHKiqSPqe~EAl~altvLe~cmkncGek 79 (594)
T KOG1086|consen 15 RATDPSNDEEDWKAIDGFCEQINKDPEGPLLAVRLLAHKIQSPQEWEALQALTVLEYCMKNCGEK 79 (594)
T ss_pred hccCccchHHHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHhhhHH
Confidence 34555556666666666666665554333332 23333455555554455555555555555544
No 393
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.50 E-value=1.9e+02 Score=20.77 Aligned_cols=59 Identities=19% Similarity=0.270 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHHHhcCCCC--hHHHHHHHHhHHHHHHhhCc-hhhHHHHHHHHHHhhcCCC
Q 009975 91 PDILKTELRSIYTQLCQDDM--PMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQ 149 (521)
Q Consensus 91 ~~~~~~~l~~~l~~l~~~~~--~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~d~~ 149 (521)
.+...++.+.++.+..+|.. -.||++|.++...+...-.. .......+..+....+|++
T Consensus 11 ~~e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPN 72 (93)
T COG1698 11 SEEKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPN 72 (93)
T ss_pred hHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCC
Confidence 34456677778888777763 46898888888777643221 1223344555666666654
No 394
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.55 E-value=2.2e+02 Score=26.87 Aligned_cols=66 Identities=14% Similarity=-0.001 Sum_probs=50.7
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc-hHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 009975 449 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVD-QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 514 (521)
Q Consensus 449 il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~-~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l 514 (521)
....++.+++++...=|..++..++.....-+ ...-...+.+.+..|+.|+.+.||..++.+|...
T Consensus 8 ~~~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~~ 74 (364)
T COG5330 8 TDQDLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQC 74 (364)
T ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHhC
Confidence 34567788899988888888888877665544 3333466777888899999999999999999864
No 395
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=30.80 E-value=6.6e+02 Score=26.50 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=32.1
Q ss_pred hhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH--h-hcHHHHHHhhc-CCCCchHHHHHHHHHHHHHhhh
Q 009975 409 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT--C-SRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIV 479 (521)
Q Consensus 409 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~--~-~~il~~l~~~l-~d~~~~VR~~a~~~l~~~~~~~ 479 (521)
.++..|.+.+..+ ..|..++..++.++..-+.-.+ . ..+++.++++| .|.+..+=..|+.+|..+...+
T Consensus 70 ~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 70 HLFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred HHHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 3444454444433 3445555566665553332211 1 23444444433 3455555555555555555543
No 396
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=30.11 E-value=3.7e+02 Score=23.43 Aligned_cols=65 Identities=11% Similarity=0.192 Sum_probs=38.5
Q ss_pred hHHHHHHHhhc-CCCCcchhhhhhhhhhhcCCCChHHH-----HHHHHHHHHhcCCCChHHHHHHHHhHHH
Q 009975 59 WYIPLVKRLAA-GEWFTARVSACGLFHIAYPSAPDILK-----TELRSIYTQLCQDDMPMVRRSAASNLGK 123 (521)
Q Consensus 59 ~l~p~i~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~-----~~l~~~l~~l~~~~~~~vr~~a~~~l~~ 123 (521)
++.|++..... .+....|.++.+.++.+.++.++++. .++.|+........+.--+..++..++.
T Consensus 145 flypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qk 215 (315)
T COG5209 145 FLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQK 215 (315)
T ss_pred eeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44566644433 33457788899999998888877733 4456666666554443333334433333
No 397
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=28.38 E-value=5e+02 Score=24.36 Aligned_cols=160 Identities=11% Similarity=0.063 Sum_probs=0.0
Q ss_pred hHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHH----------hhhHHHHHhhhcCcch-
Q 009975 355 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----------QHITPQVLEMINNPHY- 423 (521)
Q Consensus 355 l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~----------~~l~~~l~~~l~~~~~- 423 (521)
+...+..+-.....++ +..+...++.....+...++..+..++...|..... +.+-..+...-.+...
T Consensus 42 ~~~~g~~l~~~iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~ 120 (330)
T PF11707_consen 42 FQSYGLELIRSILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKD 120 (330)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhcccccccccc
Q ss_pred --------HHHHHHHHHHHHhhcccChHHHhhcH-----HHHHHhhcCCCCchHHHHHHHHHHH-------HHhhhchHH
Q 009975 424 --------LYRMTILRAISLLAPVMGSEITCSRL-----LPVVINASKDRVPNIKFNVAKVLQS-------LIPIVDQSM 483 (521)
Q Consensus 424 --------~~r~~a~~~l~~l~~~~~~~~~~~~i-----l~~l~~~l~d~~~~VR~~a~~~l~~-------~~~~~~~~~ 483 (521)
.+|..++.++-.+........-..-+ +..+++.+..+.+.+-...+.++.. +-.......
T Consensus 121 ~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~ 200 (330)
T PF11707_consen 121 SESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKL 200 (330)
T ss_pred ccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhh
Q ss_pred HHhhHHHHHHHhcCCCCc----cHHHHHHHHHHHHH
Q 009975 484 VEKTIRPCLVELTEDPDV----DVRFFATQAIQSID 515 (521)
Q Consensus 484 ~~~~~~~~l~~l~~D~~~----~vr~~a~~al~~l~ 515 (521)
+.+..+..+..+-...++ .++..+-+-+..++
T Consensus 201 fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lc 236 (330)
T PF11707_consen 201 FNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALC 236 (330)
T ss_pred cCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHh
No 398
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=27.20 E-value=1.2e+02 Score=18.58 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 009975 369 DKLGALCMQWLQDKVYSIRDAAANNLKRLA 398 (521)
Q Consensus 369 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 398 (521)
+++-.++++++..+++..|...+.+++.+.
T Consensus 6 eYLKNvl~~fl~~~~~~~~~~llpvi~tlL 35 (46)
T PF01465_consen 6 EYLKNVLLQFLESREPSEREQLLPVIATLL 35 (46)
T ss_dssp HHHHHHHHHHHTTSS---HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Confidence 456667777777777777777666666655
No 399
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=26.95 E-value=2.1e+02 Score=20.78 Aligned_cols=56 Identities=16% Similarity=0.116 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHhhcccChH--HHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh
Q 009975 423 YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 479 (521)
Q Consensus 423 ~~~r~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~ 479 (521)
...|.+++-.+++++..+.-+ .+.+.++..+-....| ...|+..+-+++..+-..-
T Consensus 3 ~~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH 60 (90)
T PF11919_consen 3 LRRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTH 60 (90)
T ss_dssp -HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhC
Confidence 346788889999988754422 2556666666666776 6678999999998887653
No 400
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=26.71 E-value=2e+02 Score=20.87 Aligned_cols=53 Identities=9% Similarity=0.140 Sum_probs=27.3
Q ss_pred HHHHHHHHhHHHHHHhhCch--hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 009975 112 MVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK 165 (521)
Q Consensus 112 ~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 165 (521)
..|.+++-+|+.++..++.+ ...+.++..+....+| ...++..+-+++..+-.
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkr 58 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKR 58 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHH
Confidence 34667777777777666532 2334444444444443 44566666666666543
No 401
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.73 E-value=2.6e+02 Score=20.13 Aligned_cols=52 Identities=25% Similarity=0.264 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCCc--HHHHHHHHHHHHHHHHHh-CHHHHHhhhHHHHHhhhcCcc
Q 009975 371 LGALCMQWLQDKV--YSIRDAAANNLKRLAEEF-GPEWAMQHITPQVLEMINNPH 422 (521)
Q Consensus 371 l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~-~~~~~~~~l~~~l~~~l~~~~ 422 (521)
.+.++.+..+|.. ..+|.+|-++...+...- .+..-....+..|.++.+|||
T Consensus 18 ~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPN 72 (93)
T COG1698 18 VMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPN 72 (93)
T ss_pred HHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCC
Confidence 4444555556643 457777777666554321 111123445666777788887
No 402
>PF09268 Clathrin-link: Clathrin, heavy-chain linker; InterPro: IPR015348 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the core motif for the alpha-helical zigzag linker region connecting the conserved N-terminal beta-propeller region to the C-terminal alpha-alpha-superhelical region in clathrin heavy chains []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 1C9I_A 1BPO_B 1C9L_A 1UTC_B 3GD1_I 3GC3_B 2XZG_A 2XZH_A.
Probab=25.47 E-value=84 Score=16.23 Aligned_cols=17 Identities=35% Similarity=0.708 Sum_probs=7.2
Q ss_pred hHHHHHhhhcCcchHHH
Q 009975 410 ITPQVLEMINNPHYLYR 426 (521)
Q Consensus 410 l~~~l~~~l~~~~~~~r 426 (521)
++|.+...+++++..+|
T Consensus 4 IVpyi~~~L~N~~LAl~ 20 (24)
T PF09268_consen 4 IVPYILNTLQNPDLALR 20 (24)
T ss_dssp HHHHHHHTT--HHHHHH
T ss_pred chhHHHhccCCHHHHHH
Confidence 44555555555444444
No 403
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=24.62 E-value=3.1e+02 Score=20.66 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=40.4
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh---hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 009975 330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 397 (521)
Q Consensus 330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 397 (521)
..++..+.+.+....+..|..++-.+..++++.+.. .+...+.+.+.......++.+|....+.+..+
T Consensus 36 ~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~iW 106 (114)
T cd03562 36 KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNIW 106 (114)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 455555555555555566667777777777776543 33344455665555666677776655555443
No 404
>PF12922 Cnd1_N: non-SMC mitotic condensation complex subunit 1, N-term; InterPro: IPR024324 Condensin is a multi-subunit protein complex that acts as an essential regulator of chromosome condensation []. It contains both SMC (structural maintenance of chromosomes) and non-SMC subunits. Condensin plays an important role during mitosis in the compaction and resolution of chromosomes to remove and prevent catenations that would otherwise inhibit segregation. This is thought to be acheived by the introducion of positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. During interphase condensin promotes clustering of dispersed loci into subnuclear domains and inhibits associations between homologues. In meiosis, condensin has been shown to influence the number of crossover events by regulating programmed double-strand breaks. Roles in gene regulation and lymphocyte development have also been defined. Condensin subunit 1 (known as Cnd1 in Schizosaccharomyces pombe (Fission yeast), and XCAP-D2 in Xenopus laevis laevis) represents one of the non-SMC subunits in the complex. This subunit is phosphorylated at several sites by Cdc2. This phosphorylation process increases the supercoiling activity of condensin [, ]. This entry represents the conserved N-terminal domain of Cnd1.
Probab=24.46 E-value=2.4e+02 Score=23.40 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhcc---------cChHHHhhcHHHHHHhhcCCC----CchHHHHHHHHHHHHHhhhc
Q 009975 424 LYRMTILRAISLLAPV---------MGSEITCSRLLPVVINASKDR----VPNIKFNVAKVLQSLIPIVD 480 (521)
Q Consensus 424 ~~r~~a~~~l~~l~~~---------~~~~~~~~~il~~l~~~l~d~----~~~VR~~a~~~l~~~~~~~~ 480 (521)
..|+.++.++..+.+. ...+.|..-+...++.+++++ +..+|..+++.|+..++.++
T Consensus 96 ~q~e~~L~~l~~~L~l~L~rlw~~~~~~e~Fi~l~~r~~y~llE~~~~~K~~~ik~~if~il~~~vk~h~ 165 (171)
T PF12922_consen 96 SQRERILEALIKVLQLDLSRLWRTTPEEEEFISLFTRPCYKLLENPEIVKNKSIKDAIFRILGTAVKKHN 165 (171)
T ss_pred HHHHHHHHHHHHHHcCcHHHHcCCCCchHHHHHHHHHHHHHHHcChHhhccHHHHHHHHHHHHHHHHHcc
Confidence 4566777777666651 112445556666777777775 66788888888888887654
No 405
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.27 E-value=9.2e+02 Score=26.01 Aligned_cols=114 Identities=8% Similarity=-0.015 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcccc
Q 009975 134 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM 213 (521)
Q Consensus 134 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~ 213 (521)
.+..+..+.+.+......-...++..+..+.+..+-+...+..+=-+.....+.+...|....+..++-.+...+-....
T Consensus 22 ~~a~~~~ldkGlr~~~t~eqpeavvr~~RLFek~PfpifiNs~llrLaDaF~~Gn~llRf~V~rv~~q~g~hln~v~n~a 101 (970)
T KOG1988|consen 22 VNAVLMELDKGLRSGKTSEQPEAVVRFPRLFEKYPFPIFINSQLLRLADAFPVGNNLLRFAVLRVDQQSGKHLNKVLNGA 101 (970)
T ss_pred hhHHHHHHhhcccccccccchHHHHHHHHHHhhCCchhhhhHHHHHHHHHhccCcHHHHHHHHHHHhhccccchhhhhhh
Confidence 34445555665554433334444445555555544443333333334445566777788877776663222222211223
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH
Q 009975 214 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 247 (521)
Q Consensus 214 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 247 (521)
+++..+......+|+.-|..++..++.+...+++
T Consensus 102 E~lrri~~V~hsnDp~aRAllL~ilg~~s~lipE 135 (970)
T KOG1988|consen 102 EFLRRIFYVDHSNDPVARALLLRILGQLSALIPE 135 (970)
T ss_pred hhhheeEEeecCCCHHHHHHHHHHHHHhhhhccc
Confidence 3444444445567788888888888888777765
No 406
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=24.03 E-value=1.1e+03 Score=27.01 Aligned_cols=164 Identities=10% Similarity=0.082 Sum_probs=84.5
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHH-
Q 009975 292 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK- 370 (521)
Q Consensus 292 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~- 370 (521)
..+|..+..++|..+..|..+...+..+......+.+ +-+...+.....-....-|...+.+++...+..|.+...+.
T Consensus 1002 ffIal~~~~~nDd~~~~r~ma~~~i~~~~~~~d~e~~-~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~e~~~~~~ 1080 (1364)
T KOG1823|consen 1002 FFIALVLVKINDDEPVCREMASMLIKVLYDKEDNELF-NLLERLLHEWVGVHKRHKRFILVGATGKAEESIGFELTIQLF 1080 (1364)
T ss_pred cchhhcccccccchHHHHHHHHHHHHHHhCHhhhHHH-hHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 3466666677888898999888888777666554443 44444444433222222222234555555555554322111
Q ss_pred --------------HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHh
Q 009975 371 --------------LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLL 436 (521)
Q Consensus 371 --------------l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l 436 (521)
.-|...+...+..+.+-..............| ...+...+...+.-+...+|.++...++.+
T Consensus 1081 ~~~~~lek~~~~~~s~~~~~~~~~~~~~~~lfs~lt~~t~~ikk~~----f~ki~~~v~~~~l~~~~~v~~s~~~lf~~l 1156 (1364)
T KOG1823|consen 1081 VLLSVLEKEIIVEVSDPIEAETEEVLFDKVLFSWLTLVTENIKKGG----FSKIWSRVVGLLLMPHSWVRLSRAQLFGFL 1156 (1364)
T ss_pred hccceeeeecccccccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 11111122122222222222222221111111 344556666667777788888888888888
Q ss_pred hcccChHH-HhhcHHHHHHhhcCCC
Q 009975 437 APVMGSEI-TCSRLLPVVINASKDR 460 (521)
Q Consensus 437 ~~~~~~~~-~~~~il~~l~~~l~d~ 460 (521)
....+... ....+++.++..+.-+
T Consensus 1157 ~a~~~~~e~~~~~i~~~ll~~L~~~ 1181 (1364)
T KOG1823|consen 1157 FAISDVSELRLRTIIPLLLAHLDYP 1181 (1364)
T ss_pred HhcccHHHHHHHHhHHHHHHhCCCc
Confidence 76555433 3456677777766543
No 407
>KOG4337 consensus Microsomal triglyceride transfer protein [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.47 E-value=8.8e+02 Score=25.15 Aligned_cols=55 Identities=20% Similarity=0.101 Sum_probs=24.2
Q ss_pred CCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 009975 107 QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCA 161 (521)
Q Consensus 107 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~ 161 (521)
.-..|+.-..|..++..+--..-.+.....+-|+..+...--+..+|..|+.++-
T Consensus 504 sGe~p~~s~~atsAl~~f~l~si~~~~kk~~~~i~hq~~k~f~~t~rTlA~dIiL 558 (896)
T KOG4337|consen 504 SGEKPEQSMRATSALAEFFLRSICQTKKKIGAPITHQLIKLFRNTTRTLAIDIIL 558 (896)
T ss_pred ccCCcchhHHHHHHHHhcCchhhhHHHHHhcchHHHHHHHHHhcchhHHHHHHHH
Confidence 3345656666666665532111112233333344333333223346666655543
No 408
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=22.43 E-value=4.6e+02 Score=21.83 Aligned_cols=147 Identities=11% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHH--HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH---H
Q 009975 371 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---T 445 (521)
Q Consensus 371 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~---~ 445 (521)
+-|++..+|+..+.. ....+.|+.++.....+.+ .+.-.+.|.+...+....--..|...+..+...+..++ +
T Consensus 4 ikplLIsCL~~q~~k--~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl~~~ 81 (174)
T PF04510_consen 4 IKPLLISCLTMQETK--ESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEFLIPF 81 (174)
T ss_pred hHHHHHHHHHhhccc--HhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhHHHHH
Q ss_pred hhcHHHHHHhhcCCCC-chHHHHHHHHHHHHHhhh------chHHHHhhHHHHHHHhcCC--CCccHHHHHHHHHHHHHH
Q 009975 446 CSRLLPVVINASKDRV-PNIKFNVAKVLQSLIPIV------DQSMVEKTIRPCLVELTED--PDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 446 ~~~il~~l~~~l~d~~-~~VR~~a~~~l~~~~~~~------~~~~~~~~~~~~l~~l~~D--~~~~vr~~a~~al~~l~~ 516 (521)
.+.++|.+.+.|.+|. ..+..-.+...+.++..+ ........++|.+.+-..+ ....=...+.+++..+..
T Consensus 82 ~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~~e~ 161 (174)
T PF04510_consen 82 MENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRDFES 161 (174)
T ss_pred HHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q ss_pred hhc
Q 009975 517 VMM 519 (521)
Q Consensus 517 ~~~ 519 (521)
++.
T Consensus 162 ~v~ 164 (174)
T PF04510_consen 162 FVS 164 (174)
T ss_pred HHH
No 409
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=22.04 E-value=3.5e+02 Score=20.36 Aligned_cols=68 Identities=12% Similarity=0.194 Sum_probs=39.2
Q ss_pred HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChH---HHhhcHHHHHHhhcCCCCchHHHHHHHHHHH
Q 009975 407 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQS 474 (521)
Q Consensus 407 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~ 474 (521)
...++..+.+.+....+..|..++..+..+++..+.. .+...+.+.+.......++.+|....+.+..
T Consensus 35 a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~i 105 (114)
T cd03562 35 AKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNI 105 (114)
T ss_pred HHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455556666665556677778888888887765543 2333334444444445566666655555543
No 410
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=21.76 E-value=6.4e+02 Score=23.30 Aligned_cols=9 Identities=33% Similarity=0.416 Sum_probs=3.4
Q ss_pred HHHHHhhcC
Q 009975 295 PIFLSLLKD 303 (521)
Q Consensus 295 ~~l~~~l~d 303 (521)
+.+..+..|
T Consensus 190 ~~~~~L~~d 198 (322)
T cd07920 190 EHALELVQD 198 (322)
T ss_pred HHHHHHhcC
Confidence 333333333
No 411
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.82 E-value=3.8e+02 Score=27.88 Aligned_cols=70 Identities=16% Similarity=0.135 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH
Q 009975 333 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 403 (521)
Q Consensus 333 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 403 (521)
.+.+..+.+-.+-.|+.-++..+....+.++.+.+. .++|.+..++.+....=+...+..|-.++..+|.
T Consensus 678 K~sI~s~~kl~D~sV~ADvL~Iltek~eiLtLDl~t-~l~P~lt~LLgS~~e~~v~vsld~Llklv~~fgt 747 (825)
T KOG0267|consen 678 KGSIGSLRKLADNSVQADVLNILTEKIEILTLDLCT-QLLPVLTALLGSKTERPVNVSLDMLLKLVAVFGT 747 (825)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHhhhhhHhhHHHHH-HHHHHHHHHhcccchhhhhhHHHHHHHHHHHhhh
Confidence 333333333333344555555555555555554432 2555555555555444444455555555555543
No 412
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=20.51 E-value=5.9e+02 Score=22.84 Aligned_cols=110 Identities=11% Similarity=0.092 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh----hhhh-hhHHHHHHhcCCC---ChHHHHHHHHHHHHHHH
Q 009975 133 LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVA-HILPVIVNFSQDK---SWRVRYMVANQLYELCE 204 (521)
Q Consensus 133 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~-~l~~~l~~~~~d~---~~~vR~~~~~~l~~i~~ 204 (521)
....+...+.....+..+..+..+++++.++..+-... .... .++..+....... +..+|.+++..+-.++-
T Consensus 107 ~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv 186 (268)
T PF08324_consen 107 IADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSV 186 (268)
T ss_dssp -HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHH
Q ss_pred HhCCCccccchHHHHHHhcCC------ChHHHHHHHHHhHHHHH
Q 009975 205 AVGPEPTRMDLVPAYVRLLRD------NEAEVRIAAAGKVTKFC 242 (521)
Q Consensus 205 ~~~~~~~~~~l~~~l~~~l~d------~~~~vr~~a~~~l~~l~ 242 (521)
.........+.-..+...+.. .++++...++-++|.+.
T Consensus 187 ~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 187 LLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHh
No 413
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=20.09 E-value=5e+02 Score=21.36 Aligned_cols=73 Identities=19% Similarity=0.238 Sum_probs=0.0
Q ss_pred HhHHHHHHHhhcCCChHHHHHHHHHHH--HhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh
Q 009975 291 EQLLPIFLSLLKDEFPDVRLNIISKLD--QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 364 (521)
Q Consensus 291 ~~l~~~l~~~l~d~~~~vr~~a~~~l~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~ 364 (521)
..+-..+..+.+-++..|--..+..+. .--+.+.-+.- ..++|.+..+++++.......+++.+..+.+.+++
T Consensus 28 ~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~~tLd~c-~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~ 102 (164)
T PF13925_consen 28 NDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEKWTLDLC-VDLLPLIEELLQSKYESYISVALEMLRSILKKFGP 102 (164)
T ss_pred CcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcCcccHHHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Done!