Query 009975
Match_columns 521
No_of_seqs 243 out of 2131
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 17:07:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009975.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009975hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 100.0 1.3E-56 4.6E-61 457.1 50.2 514 2-515 69-586 (588)
2 1b3u_A Protein (protein phosph 100.0 1.6E-48 5.5E-53 397.5 45.8 499 18-518 47-550 (588)
3 4fdd_A Transportin-1; heat rep 100.0 1.5E-34 5E-39 306.0 47.9 516 2-520 111-703 (852)
4 2bpt_A Importin beta-1 subunit 100.0 1.4E-32 4.7E-37 292.6 46.9 517 2-520 116-715 (861)
5 1u6g_C TIP120 protein, CAND1; 100.0 1.4E-32 4.6E-37 302.0 47.1 501 17-519 45-682 (1230)
6 4fdd_A Transportin-1; heat rep 100.0 1.3E-31 4.5E-36 283.4 44.0 500 18-520 88-662 (852)
7 1u6g_C TIP120 protein, CAND1; 100.0 1E-31 3.5E-36 295.1 41.2 514 2-518 69-723 (1230)
8 2bpt_A Importin beta-1 subunit 100.0 3.5E-30 1.2E-34 274.0 50.5 499 19-519 94-671 (861)
9 1qgr_A Protein (importin beta 100.0 9E-31 3.1E-35 279.1 45.3 517 2-520 110-726 (876)
10 1qgr_A Protein (importin beta 100.0 1.1E-28 3.9E-33 262.9 48.1 517 3-521 196-876 (876)
11 1ibr_B P95, importin beta-1 su 100.0 7.2E-25 2.5E-29 216.0 38.1 388 99-494 4-458 (462)
12 1jdh_A Beta-catenin; beta-cate 99.9 7.6E-24 2.6E-28 212.4 33.9 476 4-514 1-528 (529)
13 1ibr_B P95, importin beta-1 su 99.9 4.2E-24 1.4E-28 210.5 30.9 373 22-401 4-439 (462)
14 2vgl_B AP-2 complex subunit be 99.9 1.6E-23 5.3E-28 211.1 35.1 470 21-514 50-530 (591)
15 2z6g_A B-catenin; FULL-length, 99.9 1.7E-22 5.7E-27 209.6 36.3 489 24-516 119-663 (780)
16 2z6h_A Catenin beta-1, beta-ca 99.9 6E-22 2E-26 202.4 39.1 474 8-516 2-527 (644)
17 3now_A UNC-45 protein, SD10334 99.9 4.4E-22 1.5E-26 201.0 36.2 481 33-516 217-782 (810)
18 2jdq_A Importin alpha-1 subuni 99.9 1.7E-22 5.8E-27 198.3 32.6 378 138-515 22-442 (450)
19 2vgl_B AP-2 complex subunit be 99.9 2.5E-22 8.6E-27 202.3 33.0 471 22-517 15-494 (591)
20 1wa5_B Importin alpha subunit; 99.9 4E-22 1.4E-26 199.3 34.1 378 138-515 89-509 (530)
21 2jdq_A Importin alpha-1 subuni 99.9 2.7E-22 9.2E-27 196.9 31.2 379 99-477 22-443 (450)
22 1wa5_B Importin alpha subunit; 99.9 1.4E-21 4.9E-26 195.3 30.8 381 98-478 88-511 (530)
23 3now_A UNC-45 protein, SD10334 99.9 5.7E-19 2E-23 178.4 46.4 495 20-516 148-737 (810)
24 2z6g_A B-catenin; FULL-length, 99.9 1.3E-20 4.3E-25 195.5 34.0 461 19-480 149-666 (780)
25 4b8j_A Importin subunit alpha- 99.9 2.9E-20 9.8E-25 186.0 35.4 377 138-514 76-494 (528)
26 4b8j_A Importin subunit alpha- 99.9 4.7E-20 1.6E-24 184.4 34.4 381 98-478 75-497 (528)
27 1w63_A Adapter-related protein 99.9 8.7E-20 3E-24 184.3 32.4 468 25-516 75-577 (618)
28 2z6h_A Catenin beta-1, beta-ca 99.9 1E-18 3.6E-23 178.5 37.5 420 97-516 14-486 (644)
29 1jdh_A Beta-catenin; beta-cate 99.9 5.2E-19 1.8E-23 177.3 33.7 421 95-515 15-488 (529)
30 1w63_A Adapter-related protein 99.8 9.3E-19 3.2E-23 176.9 28.7 436 19-477 106-577 (618)
31 2vgl_A Adaptor protein complex 99.8 4.4E-17 1.5E-21 163.9 33.2 472 25-515 79-588 (621)
32 3ul1_B Importin subunit alpha- 99.8 3.9E-17 1.3E-21 161.6 31.6 375 139-513 60-475 (510)
33 3tpo_A Importin subunit alpha- 99.8 1.3E-16 4.5E-21 158.8 34.8 375 139-513 79-494 (529)
34 1oyz_A Hypothetical protein YI 99.8 4.6E-18 1.6E-22 155.1 22.0 254 214-512 23-278 (280)
35 3ul1_B Importin subunit alpha- 99.8 8E-17 2.7E-21 159.4 31.9 378 100-477 60-478 (510)
36 3tpo_A Importin subunit alpha- 99.8 2.3E-16 8E-21 157.0 35.3 379 99-477 78-497 (529)
37 1oyz_A Hypothetical protein YI 99.8 1.3E-17 4.5E-22 152.1 22.0 253 176-473 24-278 (280)
38 1wa5_C Importin alpha RE-expor 99.8 8.9E-15 3.1E-19 156.3 42.7 486 20-516 6-628 (960)
39 2vgl_A Adaptor protein complex 99.7 1.5E-15 5.1E-20 152.8 29.0 442 16-476 107-588 (621)
40 1wa5_C Importin alpha RE-expor 99.7 5E-14 1.7E-18 150.5 42.2 411 96-517 5-526 (960)
41 3ltj_A Alpharep-4; protein eng 99.7 8.6E-16 2.9E-20 132.4 18.2 188 291-518 13-200 (201)
42 2qk2_A LP04448P; mini spindles 99.7 8.3E-16 2.8E-20 136.5 18.2 189 291-484 14-212 (242)
43 2x19_B Importin-13; nuclear tr 99.7 2.3E-13 8E-18 146.0 40.2 484 18-517 23-600 (963)
44 3ltm_A Alpha-REP4; protein eng 99.7 2.1E-15 7.3E-20 131.0 20.0 187 174-400 18-204 (211)
45 2qk2_A LP04448P; mini spindles 99.7 1.4E-15 4.7E-20 135.1 18.5 186 330-520 14-209 (242)
46 3ltm_A Alpha-REP4; protein eng 99.7 4.2E-15 1.4E-19 129.2 20.5 188 136-363 19-206 (211)
47 3ltj_A Alpharep-4; protein eng 99.7 3.7E-15 1.3E-19 128.4 20.0 184 174-397 13-196 (201)
48 2x1g_F Cadmus; transport prote 99.7 5E-14 1.7E-18 151.2 32.8 480 21-517 9-616 (971)
49 3m1i_C Exportin-1; heat repeat 99.7 5.6E-13 1.9E-17 143.7 39.9 492 15-518 12-620 (1049)
50 2x1g_F Cadmus; transport prote 99.7 3.6E-13 1.2E-17 144.5 36.3 483 30-519 50-666 (971)
51 2x19_B Importin-13; nuclear tr 99.6 1.8E-12 6.2E-17 139.2 39.2 477 30-515 68-645 (963)
52 3l6x_A Catenin delta-1; cateni 99.6 2.1E-12 7E-17 126.5 33.0 342 174-515 47-475 (584)
53 4hxt_A De novo protein OR329; 99.6 2.8E-13 9.5E-18 121.3 24.4 225 294-518 4-243 (252)
54 3ibv_A Exportin-T; karyopherin 99.6 9.3E-12 3.2E-16 131.4 39.3 480 15-520 2-570 (980)
55 1xm9_A Plakophilin 1; armadill 99.6 6.3E-13 2.1E-17 129.3 27.7 147 368-514 281-447 (457)
56 2qk1_A Protein STU2; STU2P, XM 99.6 9.1E-14 3.1E-18 122.7 19.3 199 292-495 16-234 (249)
57 3opb_A SWI5-dependent HO expre 99.6 1E-11 3.4E-16 123.5 34.4 475 31-518 181-730 (778)
58 3ibv_A Exportin-T; karyopherin 99.6 1.8E-11 6.2E-16 129.2 38.5 500 16-519 124-771 (980)
59 3m1i_C Exportin-1; heat repeat 99.6 3.1E-11 1.1E-15 130.1 41.2 447 30-480 59-621 (1049)
60 4db8_A Armadillo-repeat protei 99.6 1.7E-13 5.7E-18 122.7 19.2 224 293-516 13-251 (252)
61 1xm9_A Plakophilin 1; armadill 99.6 1.7E-12 5.7E-17 126.3 27.1 148 330-477 282-449 (457)
62 3l6x_A Catenin delta-1; cateni 99.6 8.3E-12 2.8E-16 122.2 31.5 213 266-478 205-477 (584)
63 4hat_C Exportin-1; heat repeat 99.6 6.5E-11 2.2E-15 125.0 39.8 490 18-519 15-621 (1023)
64 4hxt_A De novo protein OR329; 99.6 8.4E-13 2.9E-17 118.1 22.2 229 216-480 4-244 (252)
65 2qk1_A Protein STU2; STU2P, XM 99.5 3.4E-13 1.2E-17 119.0 19.1 188 332-520 17-224 (249)
66 4db8_A Armadillo-repeat protei 99.5 1.2E-12 4.1E-17 117.1 20.4 225 213-437 11-250 (252)
67 4ady_A RPN2, 26S proteasome re 99.5 2.3E-09 8E-14 109.0 45.1 290 191-515 374-675 (963)
68 4ady_A RPN2, 26S proteasome re 99.5 3E-11 1E-15 122.6 29.9 309 176-515 393-718 (963)
69 3opb_A SWI5-dependent HO expre 99.5 1.1E-10 3.6E-15 116.2 31.9 400 31-438 267-728 (778)
70 3nmz_A APC variant protein; pr 99.5 1.2E-11 4.1E-16 118.3 24.0 245 272-516 167-450 (458)
71 4hat_C Exportin-1; heat repeat 99.5 9.5E-10 3.3E-14 116.2 40.2 449 30-482 59-623 (1023)
72 3nmz_A APC variant protein; pr 99.4 7.5E-11 2.6E-15 112.8 28.0 245 233-478 167-451 (458)
73 1lrv_A LRV, leucine-rich repea 99.4 1.9E-14 6.4E-19 124.8 1.2 185 182-472 57-241 (244)
74 1lrv_A LRV, leucine-rich repea 99.4 2.1E-14 7.2E-19 124.5 1.4 188 102-395 55-242 (244)
75 4db6_A Armadillo repeat protei 99.4 1.6E-11 5.6E-16 106.3 19.2 187 330-516 11-209 (210)
76 2db0_A 253AA long hypothetical 99.4 6.5E-10 2.2E-14 87.6 25.8 216 290-516 30-246 (253)
77 2iw3_A Elongation factor 3A; a 99.4 6.7E-11 2.3E-15 121.7 25.6 261 253-520 54-328 (986)
78 4db6_A Armadillo repeat protei 99.3 6.9E-11 2.4E-15 102.3 18.4 186 292-477 12-209 (210)
79 3a6p_A Exportin-5; exportin-5, 99.2 2.7E-08 9.1E-13 108.0 36.2 489 17-516 9-657 (1204)
80 2of3_A ZYG-9; multifunctional 99.2 1.2E-09 4.1E-14 95.0 20.7 180 299-484 53-243 (266)
81 2iw3_A Elongation factor 3A; a 99.2 2.7E-09 9.2E-14 110.0 26.5 314 175-497 54-401 (986)
82 3gjx_A Exportin-1; transport, 99.2 9.6E-08 3.3E-12 100.7 38.2 486 20-518 29-646 (1073)
83 3nmw_A APC variant protein; AR 99.2 3E-09 1E-13 98.6 23.3 214 266-479 97-336 (354)
84 3nmw_A APC variant protein; AR 99.2 1.4E-09 4.8E-14 100.9 20.5 249 269-517 48-335 (354)
85 3gjx_A Exportin-1; transport, 99.2 5.3E-07 1.8E-11 95.1 39.4 460 15-482 59-649 (1073)
86 2db0_A 253AA long hypothetical 99.2 6.2E-08 2.1E-12 76.5 24.1 215 96-320 31-245 (253)
87 3oc3_A Helicase MOT1, MOT1; re 99.1 5.8E-10 2E-14 103.9 14.3 256 215-512 175-432 (800)
88 1xqr_A HSPBP1 protein; armadil 99.1 9.5E-09 3.2E-13 92.6 21.9 187 292-478 28-239 (296)
89 4ffb_C Protein STU2; tubulin f 99.1 1.7E-09 5.7E-14 97.8 16.7 181 336-519 14-215 (278)
90 3tjz_B Coatomer subunit gamma; 99.1 9.7E-10 3.3E-14 100.5 14.7 280 175-471 68-347 (355)
91 3tjz_B Coatomer subunit gamma; 99.1 2.9E-09 1E-13 97.4 17.0 289 89-394 60-348 (355)
92 2of3_A ZYG-9; multifunctional 99.1 8.6E-09 2.9E-13 89.7 18.9 179 220-405 52-242 (266)
93 3b2a_A TON_1937, putative unch 99.1 4E-08 1.4E-12 81.3 21.5 217 97-317 33-257 (265)
94 1xqr_A HSPBP1 protein; armadil 99.1 9.8E-09 3.4E-13 92.5 19.1 172 346-517 55-239 (296)
95 3b2a_A TON_1937, putative unch 99.1 2.5E-08 8.5E-13 82.5 19.4 222 291-517 32-262 (265)
96 3a6p_A Exportin-5; exportin-5, 99.0 7.4E-07 2.5E-11 96.8 34.9 447 30-480 57-660 (1204)
97 3oc3_A Helicase MOT1, MOT1; re 99.0 9.7E-09 3.3E-13 95.9 16.7 255 98-395 175-432 (800)
98 4ffb_C Protein STU2; tubulin f 99.0 1.5E-08 5.3E-13 91.4 17.3 183 219-404 14-217 (278)
99 1te4_A Conserved protein MTH18 98.9 2.8E-10 9.4E-15 89.9 2.7 119 213-356 11-129 (131)
100 3l9t_A Putative uncharacterize 98.9 9.5E-09 3.3E-13 86.1 11.9 141 134-285 69-210 (240)
101 1te4_A Conserved protein MTH18 98.9 2.7E-10 9.4E-15 89.9 2.2 121 251-396 10-130 (131)
102 1vsy_5 Proteasome activator BL 98.7 1.1E-06 3.8E-11 92.0 22.7 387 89-481 500-970 (997)
103 3l9t_A Putative uncharacterize 98.7 1.7E-06 5.7E-11 72.6 18.0 138 330-478 70-208 (240)
104 3u0r_A Apoptosis inhibitor 5; 98.4 0.00029 9.9E-09 65.5 25.1 254 228-493 42-314 (507)
105 1vsy_5 Proteasome activator BL 98.3 5.8E-06 2E-10 86.6 15.0 379 15-405 503-972 (997)
106 3u0r_A Apoptosis inhibitor 5; 98.2 0.00091 3.1E-08 62.3 24.6 242 149-402 41-301 (507)
107 3grl_A General vesicular trans 98.2 0.00051 1.7E-08 67.0 23.2 296 104-399 29-394 (651)
108 3grl_A General vesicular trans 98.2 0.0014 4.8E-08 64.0 25.9 304 135-438 21-394 (651)
109 3tt9_A Plakophilin-2; cell adh 98.1 0.00022 7.6E-09 61.2 17.8 186 333-518 10-231 (233)
110 4gmo_A Putative uncharacterize 98.1 0.0066 2.3E-07 61.9 31.4 185 20-206 35-260 (684)
111 3tt9_A Plakophilin-2; cell adh 97.9 0.00025 8.5E-09 60.9 13.3 145 371-515 9-179 (233)
112 1lsh_A Lipovitellin (LV-1N, LV 97.4 0.018 6.2E-07 61.6 22.6 170 175-364 391-580 (1056)
113 1lsh_A Lipovitellin (LV-1N, LV 97.4 0.0084 2.9E-07 64.1 19.2 132 330-474 390-540 (1056)
114 3o2t_A Symplekin; heat repeat, 97.3 0.07 2.4E-06 49.1 22.2 200 290-495 24-272 (386)
115 4gmo_A Putative uncharacterize 97.0 0.0097 3.3E-07 60.7 14.8 87 427-514 158-256 (684)
116 3gs3_A Symplekin, LD45768P; he 97.0 0.16 5.4E-06 44.0 23.7 129 307-438 30-173 (257)
117 3o2t_A Symplekin; heat repeat, 97.0 0.23 7.9E-06 45.7 23.4 112 94-207 60-186 (386)
118 3gs3_A Symplekin, LD45768P; he 96.6 0.31 1.1E-05 42.2 21.7 114 92-207 48-176 (257)
119 4atg_A TAF6; transcription, TF 96.6 0.15 5E-06 41.9 15.5 142 307-459 23-179 (196)
120 4atg_A TAF6; transcription, TF 95.3 0.92 3.2E-05 37.2 14.5 158 95-262 9-177 (196)
121 1upk_A MO25 protein; transfera 95.0 1.9 6.5E-05 38.5 21.9 205 289-499 75-313 (341)
122 3ldz_A STAM-1, signal transduc 94.6 0.33 1.1E-05 37.6 9.9 76 407-482 40-119 (140)
123 2b6c_A Hypothetical protein EF 93.5 2.9 9.9E-05 35.3 14.6 132 139-284 58-190 (220)
124 3g2s_A C-terminal fragment of 93.4 0.83 2.8E-05 35.7 10.0 75 407-481 46-130 (149)
125 1x5b_A Signal transducing adap 92.8 0.92 3.2E-05 36.1 9.8 74 408-481 51-129 (163)
126 2b6c_A Hypothetical protein EF 92.3 4.2 0.00014 34.3 13.9 131 334-478 58-189 (220)
127 1mhq_A ADP-ribosylation factor 92.3 3.2 0.00011 32.3 12.6 75 407-481 36-120 (148)
128 3g2s_A C-terminal fragment of 92.0 2.5 8.4E-05 33.0 11.0 74 330-403 47-130 (149)
129 3jxy_A Alkylpurine DNA glycosy 91.7 5.3 0.00018 34.0 14.0 132 139-284 64-197 (232)
130 3zyq_A Hepatocyte growth facto 90.6 1.7 5.7E-05 36.9 9.5 74 408-481 44-122 (226)
131 1elk_A Target of MYB1; superhe 90.3 3.3 0.00011 32.7 10.4 74 407-480 51-133 (157)
132 3ldz_A STAM-1, signal transduc 90.1 5.3 0.00018 30.8 11.8 87 135-221 41-131 (140)
133 1upk_A MO25 protein; transfera 89.7 11 0.00037 33.7 22.4 183 330-514 77-281 (341)
134 1x5b_A Signal transducing adap 89.6 6.6 0.00023 31.1 12.5 87 135-221 51-142 (163)
135 1juq_A ADP-ribosylation factor 89.6 5.4 0.00019 31.9 11.3 76 407-482 48-133 (171)
136 1juq_A ADP-ribosylation factor 89.2 7.4 0.00025 31.2 12.6 75 330-404 49-133 (171)
137 1mhq_A ADP-ribosylation factor 88.8 7.1 0.00024 30.4 13.1 74 330-403 37-120 (148)
138 3jxy_A Alkylpurine DNA glycosy 88.0 11 0.00039 31.9 14.9 131 295-439 64-196 (232)
139 3zyq_A Hepatocyte growth facto 85.7 12 0.00042 31.5 11.8 78 134-211 43-125 (226)
140 3ut4_A CTHE_2751, putative unc 85.7 4.4 0.00015 30.6 7.8 77 371-460 32-108 (134)
141 1vdy_A Hypothetical protein (R 84.8 2.5 8.5E-05 32.4 6.3 70 445-515 46-129 (140)
142 3fga_B Serine/threonine-protei 83.0 29 0.001 32.0 21.8 95 422-516 264-366 (403)
143 2npp_B PP2A, B subunit, serine 82.4 33 0.0011 32.3 21.5 84 392-477 306-399 (449)
144 3dad_A FH1/FH2 domain-containi 80.8 31 0.0011 30.9 13.5 138 109-246 130-289 (339)
145 1dvp_A HRS, hepatocyte growth 78.7 13 0.00046 31.2 9.4 74 408-481 41-119 (220)
146 2fv2_A RCD1 required for cell 73.0 32 0.0011 29.4 9.9 54 423-476 116-173 (268)
147 3bwt_A Protein PUF4; pumilio, 72.0 52 0.0018 29.6 12.3 10 256-265 122-131 (333)
148 3ut4_A CTHE_2751, putative unc 71.8 30 0.001 26.1 9.8 79 252-343 30-108 (134)
149 2npp_B PP2A, B subunit, serine 70.9 71 0.0024 30.1 21.6 219 21-243 163-399 (449)
150 3dad_A FH1/FH2 domain-containi 70.3 61 0.0021 29.0 16.5 99 303-401 129-233 (339)
151 2fv2_A RCD1 required for cell 69.6 53 0.0018 28.1 17.1 71 133-203 98-173 (268)
152 3fga_B Serine/threonine-protei 69.0 72 0.0025 29.5 20.0 88 390-477 271-366 (403)
153 1w9c_A CRM1 protein, exportin 67.3 68 0.0023 28.5 20.9 96 266-362 91-198 (321)
154 1dvp_A HRS, hepatocyte growth 67.0 55 0.0019 27.3 12.9 77 135-211 41-122 (220)
155 3rru_A TOM1L1 protein; structu 66.2 44 0.0015 26.0 8.9 75 407-481 51-134 (152)
156 1elk_A Target of MYB1; superhe 63.3 52 0.0018 25.7 12.9 76 135-210 52-136 (157)
157 1vsy_4 Proteasome activator BL 61.4 1.5E+02 0.0052 30.5 23.1 107 214-320 339-454 (799)
158 1vdy_A Hypothetical protein (R 61.1 53 0.0018 25.1 8.6 64 338-402 18-81 (140)
159 2jak_A Serine/threonine-protei 57.7 1.2E+02 0.004 28.0 15.4 176 330-507 173-358 (392)
160 1t06_A Hypothetical protein; s 53.0 44 0.0015 28.3 7.5 69 137-205 109-181 (235)
161 3gvo_A Pumilio 2, pumilio homo 52.5 1.3E+02 0.0046 27.1 12.7 49 445-496 295-343 (351)
162 3k49_A MRNA-binding protein PU 50.7 1.5E+02 0.005 27.0 11.3 298 179-496 45-361 (369)
163 3rru_A TOM1L1 protein; structu 50.3 87 0.003 24.3 10.3 86 135-220 52-146 (152)
164 1t06_A Hypothetical protein; s 46.6 65 0.0022 27.2 7.5 32 290-321 149-180 (235)
165 3bwt_A Protein PUF4; pumilio, 43.2 1.8E+02 0.0061 25.9 12.3 14 292-305 191-204 (333)
166 4f52_E Glomulin; cullin-ring E 42.9 2.6E+02 0.0087 27.6 12.4 107 94-203 314-430 (596)
167 2rg8_A Programmed cell death p 41.5 1.3E+02 0.0044 23.7 9.7 101 94-202 9-113 (165)
168 1sz9_A PCF11 protein; RNA poly 41.0 1.2E+02 0.0041 23.2 10.1 69 330-398 42-113 (144)
169 1vsy_4 Proteasome activator BL 37.5 3.6E+02 0.012 27.7 27.4 114 94-207 336-458 (799)
170 2d9d_A BAG family molecular ch 36.7 95 0.0032 20.8 6.7 34 485-518 43-76 (89)
171 3ebb_A Phospholipase A2-activa 35.9 2.3E+02 0.0078 25.0 15.8 107 410-516 148-263 (304)
172 3gvo_A Pumilio 2, pumilio homo 35.5 2.5E+02 0.0085 25.3 16.2 10 295-304 206-215 (351)
173 2jak_A Serine/threonine-protei 34.9 2.7E+02 0.0093 25.6 15.8 89 21-109 175-270 (392)
174 3gae_A Protein DOA1; UFD3, CDC 32.8 1.4E+02 0.0047 25.6 7.4 98 419-516 100-217 (253)
175 3eg5_B Protein diaphanous homo 31.4 2.4E+02 0.0083 25.8 9.3 56 423-478 134-192 (383)
176 2f31_A Diaphanous protein homo 31.3 2.3E+02 0.0079 23.7 9.7 56 423-478 68-126 (233)
177 4flb_A Regulation of nuclear P 30.2 1.7E+02 0.0058 21.8 10.5 33 330-362 39-71 (132)
178 1w9c_A CRM1 protein, exportin 28.9 3.1E+02 0.011 24.4 26.1 73 330-402 118-199 (321)
179 4fu3_A Regulation of nuclear P 26.7 2E+02 0.0068 21.4 7.2 55 301-362 16-70 (135)
180 3s4w_B Protein FACD2, fanconi 26.7 6.7E+02 0.023 27.5 25.6 29 33-63 55-83 (1323)
181 3l3f_X Protein DOA1, DOA1/UFD3 25.9 3.7E+02 0.013 24.3 9.7 99 418-516 208-326 (362)
182 1ho8_A Vacuolar ATP synthase s 25.9 4.3E+02 0.015 25.0 28.7 116 40-166 78-198 (480)
183 3gae_A Protein DOA1; UFD3, CDC 24.5 3.2E+02 0.011 23.2 8.2 104 140-243 94-217 (253)
184 3pst_A Protein DOA1; protein d 24.3 4.3E+02 0.015 24.5 10.7 100 417-516 270-389 (425)
185 4f52_E Glomulin; cullin-ring E 23.7 5.3E+02 0.018 25.3 17.7 75 408-482 316-400 (596)
186 3eiq_C Programmed cell death p 21.9 3.9E+02 0.013 24.2 8.6 104 92-203 51-158 (358)
187 1ho8_A Vacuolar ATP synthase s 21.8 5.2E+02 0.018 24.5 28.8 56 422-477 418-476 (480)
188 3l3f_X Protein DOA1, DOA1/UFD3 20.9 2E+02 0.0067 26.2 6.4 107 137-243 200-326 (362)
189 3eg5_B Protein diaphanous homo 20.8 4.9E+02 0.017 23.8 12.1 29 410-438 163-191 (383)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=1.3e-56 Score=457.12 Aligned_cols=514 Identities=58% Similarity=0.955 Sum_probs=481.1
Q ss_pred hhhhhccccCCCcchhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhh
Q 009975 2 AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG 81 (521)
Q Consensus 2 a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~ 81 (521)
++.||.+++++|++++.+.+++.|..+.+++++.+|..|++++..++..++++.+.+.++|++.++.+++++..|..++.
T Consensus 69 ~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~ 148 (588)
T 1b3u_A 69 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACG 148 (588)
T ss_dssp HHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGG
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999888999999999999888899999999
Q ss_pred hhhhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 009975 82 LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCA 161 (521)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~ 161 (521)
+++.++.+.++..++.+++.+..+++|+++.||..++.+++.+++..+.+...+.++|.+..+++|+++.+|..|+.+++
T Consensus 149 ~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~ 228 (588)
T 1b3u_A 149 LFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACV 228 (588)
T ss_dssp GHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999888888999999999999999999999999999999988877777889999999999999999999999999
Q ss_pred HHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHH
Q 009975 162 ALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 241 (521)
Q Consensus 162 ~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 241 (521)
.++...+++...+.++|.+..+++|++|.+|..++++++.++...+++...+.++|.+.++++|+++.||.+|+.+++.+
T Consensus 229 ~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 308 (588)
T 1b3u_A 229 NIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 308 (588)
T ss_dssp HHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 99999888777788999999999999999999999999999988876655578999999999999999999999999999
Q ss_pred HhhhCHH----HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHH
Q 009975 242 CRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 317 (521)
Q Consensus 242 ~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 317 (521)
+...+++ .+.+.++|.+..+++|++|.||..++.+++.++..+|++...+.++|.+..+++|++++||..++.+++
T Consensus 309 ~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~ 388 (588)
T 1b3u_A 309 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLD 388 (588)
T ss_dssp HHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCH
T ss_pred HHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 9988765 567889999999999999999999999999999999988777889999999999999999999999999
Q ss_pred HhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 009975 318 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 397 (521)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 397 (521)
.+...+|.+...+.++|.+.++.+|++|++|..++.+++.++..+|.+.+.+.++|.+..+++|+++.||.+|+.+++.+
T Consensus 389 ~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l 468 (588)
T 1b3u_A 389 CVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKL 468 (588)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 99998887776688999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred HHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975 398 AEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 398 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~ 477 (521)
...+|.++..+.++|.+....++++|.+|..++.+++.++..+|.+.+.+.++|.+...++|++++||..++++++.+..
T Consensus 469 ~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 469 VEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred HHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence 99999988778899999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred hhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 009975 478 IVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 515 (521)
Q Consensus 478 ~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~ 515 (521)
.+|.+...+.+.|.+.++.+|+|++||..|.+|++++.
T Consensus 549 ~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 549 ILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp GSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HhchhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 99988777899999999999999999999999999875
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=1.6e-48 Score=397.50 Aligned_cols=499 Identities=21% Similarity=0.298 Sum_probs=274.8
Q ss_pred HHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChH-HHH
Q 009975 18 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKT 96 (521)
Q Consensus 18 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-~~~ 96 (521)
++.++|.|.... ++++.+|..+.+.++.+++.++.......++|.+..+..+++..+|..++..++.+....++. ..+
T Consensus 47 ~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~ 125 (588)
T 1b3u_A 47 RSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125 (588)
T ss_dssp HHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 334444444333 334444554444444444444333333444444444444444444444444444444433332 233
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhh
Q 009975 97 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI 176 (521)
Q Consensus 97 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 176 (521)
.+++.+..+.+++++.+|..++..++.+....+. ...+.++|.+..+++|+++.||..+++.++.+++..+++...+.+
T Consensus 126 ~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~-~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l 204 (588)
T 1b3u_A 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS-AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEI 204 (588)
T ss_dssp THHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH-HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHH
Confidence 3444444444444445555555555444443332 233445555555555555555555555555555555544444455
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhH
Q 009975 177 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP 256 (521)
Q Consensus 177 ~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 256 (521)
+|.+..+++|+++.||..++.+++.++...+++...+.++|.+.++++|++|.||..++.+++.++...+++.+.+.++|
T Consensus 205 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~ 284 (588)
T 1b3u_A 205 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVP 284 (588)
T ss_dssp HHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHH
Confidence 55555555555555555555555555554443333344555555555555555555555555555555555444445555
Q ss_pred HHHHhccCCcHHHHHHHHHHHHccccccChH----HHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhH
Q 009975 257 CVKELSSDSSQHVRSALASVIMGMAPLLGKD----ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 332 (521)
Q Consensus 257 ~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 332 (521)
.+.+++.|+++.||..++.+++.++..++.+ ...+.++|.+..+++|+++.||..++.+++.++..+|.+...+.+
T Consensus 285 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l 364 (588)
T 1b3u_A 285 AFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHL 364 (588)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 5555555555555555555555555554443 234455555555555555555555555555555555544433455
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHH
Q 009975 333 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 412 (521)
Q Consensus 333 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 412 (521)
+|.+..+++|+++.||..++.+++.+.+.+|.+.+.+.++|.+..+++|++|.+|.+++.+++.+...+|.+.+.+.++|
T Consensus 365 ~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 444 (588)
T 1b3u_A 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNS 444 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 55555555555556666666666655555555444455566666666666666666666666666665555444445666
Q ss_pred HHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHH
Q 009975 413 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCL 492 (521)
Q Consensus 413 ~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l 492 (521)
.+...++|+++.+|..++.+++.++..+|.+.+.+.++|.+..+..|+++.+|..++.+++.++..++.+.+.+.++|.+
T Consensus 445 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l 524 (588)
T 1b3u_A 445 LCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTV 524 (588)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 66666666666666666666666666666555555666666666666666666666666666666666665666677777
Q ss_pred HHhcCCCCccHHHHHHHHHHHHHHhh
Q 009975 493 VELTEDPDVDVRFFATQAIQSIDHVM 518 (521)
Q Consensus 493 ~~l~~D~~~~vr~~a~~al~~l~~~~ 518 (521)
.++++|++++||..+.++++.+.+.+
T Consensus 525 ~~~l~d~~~~Vr~~a~~~l~~l~~~~ 550 (588)
T 1b3u_A 525 LRMAGDPVANVRFNVAKSLQKIGPIL 550 (588)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHGGGS
T ss_pred HhhCCCCCchHHHHHHHHHHHHHHHh
Confidence 77777777777777777777766543
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.5e-34 Score=305.96 Aligned_cols=516 Identities=18% Similarity=0.151 Sum_probs=409.7
Q ss_pred hhhhhccccCCCcchhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHH-------HHhHHHHHHHhhcCCCCc
Q 009975 2 AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDL-------VDWYIPLVKRLAAGEWFT 74 (521)
Q Consensus 2 a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~-------~~~l~p~i~~~~~~~~~~ 74 (521)
|+.++.++..- ++..++.+++.|.+.++++++.+|..++.+++.+++..++..- .+.++|.+.+..++++..
T Consensus 111 a~~i~~ia~~~-~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~ 189 (852)
T 4fdd_A 111 GILITTIASKG-ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK 189 (852)
T ss_dssp HHHHHHHHHHT-TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHH
T ss_pred HHHHHHHHHhc-CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHH
Confidence 45566666543 3466788999999999999999999999999999999876421 356788888888888889
Q ss_pred chhhhhhhhhhhcCCCChH---HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch--hhHHHHHHHHHHhhcCCC
Q 009975 75 ARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQ 149 (521)
Q Consensus 75 ~r~~~~~~~~~~~~~~~~~---~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~ 149 (521)
+|..++..+..+....++. ....+++.+..+++|+++.||..++.+|+.+++..+.. .+.+.+++.+..+..|.+
T Consensus 190 vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~ 269 (852)
T 4fdd_A 190 IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQD 269 (852)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCc
Confidence 9999988887777555543 24578888888899999999999999999999875532 234568888888999999
Q ss_pred hhHHHHHHHHHHHHhhhcCh----hhhhhhhHHHHHHhc-----------CC-----------CChHHHHHHHHHHHHHH
Q 009975 150 DSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFS-----------QD-----------KSWRVRYMVANQLYELC 203 (521)
Q Consensus 150 ~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~-----------~d-----------~~~~vR~~~~~~l~~i~ 203 (521)
+.+|..|++.+..+++.... ......++|.+...+ .| .+|.+|..++.+++.++
T Consensus 270 ~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la 349 (852)
T 4fdd_A 270 ENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLA 349 (852)
T ss_dssp HHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHH
Confidence 99999999999999864211 113345777776665 34 56789999999999999
Q ss_pred HHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccc
Q 009975 204 EAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMA 281 (521)
Q Consensus 204 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~ 281 (521)
...+.. ..+.++|.+.+.++|++|.+|.+|+.+++.+++..+.. .+.+.++|.+...+.|+++.||..++++++.++
T Consensus 350 ~~~~~~-~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~ 428 (852)
T 4fdd_A 350 NVYRDE-LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYA 428 (852)
T ss_dssp HHHGGG-GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTH
T ss_pred HhccHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 988744 34678999999999999999999999999998866532 345678899999999999999999999999998
Q ss_pred cccCh---HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhh--HhhhHHHHHHHHhcCCChHHHHHHHHHhH
Q 009975 282 PLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIP 356 (521)
Q Consensus 282 ~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~vr~~~~~~l~ 356 (521)
...+. ..+...+++.+...+.|+++.||..|+.+++.+++..+... +.+.+++.+...+++.+......++++++
T Consensus 429 ~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~ 508 (852)
T 4fdd_A 429 HWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIG 508 (852)
T ss_dssp HHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 76644 33466789999999999999999999999999998777542 33677777777777777777777889999
Q ss_pred HHHhhhChh----hhHHHHHHHHH---HHcCCCcHHHHHHHHHHHHHHHHHhCHHHH--HhhhHHHHHhhhc--------
Q 009975 357 LLASQLGVG----FFDDKLGALCM---QWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMIN-------- 419 (521)
Q Consensus 357 ~l~~~~~~~----~~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~-------- 419 (521)
.++...|.. .+.+.++|.+. ..+.|+++.+| .++++++.++..+|..+. ...+++.+...+.
T Consensus 509 ~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~ 587 (852)
T 4fdd_A 509 TLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAML 587 (852)
T ss_dssp HHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998877754 36677888887 45678888886 789999999998887532 3445554433321
Q ss_pred ---------CcchHHHHHHHHHHHHhhcccChHH--H--hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--HH
Q 009975 420 ---------NPHYLYRMTILRAISLLAPVMGSEI--T--CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MV 484 (521)
Q Consensus 420 ---------~~~~~~r~~a~~~l~~l~~~~~~~~--~--~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~--~~ 484 (521)
.++..+|..++.+++.++..+|... + .+.+++.+..++.|+.+.||..+..+++.++..++.. .+
T Consensus 588 ~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 667 (852)
T 4fdd_A 588 NNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC 667 (852)
T ss_dssp HHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGG
T ss_pred hhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHH
Confidence 2356789999999999999887543 2 2678999999999999999999999999999887754 34
Q ss_pred HhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 009975 485 EKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 520 (521)
Q Consensus 485 ~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~~ 520 (521)
...++|.+.+.+++.+.+||..|+++++.+...+++
T Consensus 668 l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~ 703 (852)
T 4fdd_A 668 IADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI 703 (852)
T ss_dssp HHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH
Confidence 467899999888888999999999999999887753
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.4e-32 Score=292.57 Aligned_cols=517 Identities=12% Similarity=0.112 Sum_probs=405.2
Q ss_pred hhhhhccccCCCcchhHHhhhhHHhhhhcCc-hhHHHHHHHHHHHHHHhhcChh-----HHHHhHHHHHHHhhcCC--CC
Q 009975 2 AEELGVFIPYVGGVEHAHVLLPPLETLCTVE-ETCVRDKAVESLCRIGSQMRES-----DLVDWYIPLVKRLAAGE--WF 73 (521)
Q Consensus 2 a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~vR~~a~~~l~~i~~~~~~~-----~~~~~l~p~i~~~~~~~--~~ 73 (521)
|..++.++..-+....|+.+++.|.+.+.++ ++.+|..++..+..+++.++++ ...+.++|.+.....++ +.
T Consensus 116 ~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~ 195 (861)
T 2bpt_A 116 AQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSK 195 (861)
T ss_dssp HHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCH
T ss_pred HHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 4455555554332235678889988888877 9999999999999999987654 34567777777777765 67
Q ss_pred cchhhhhhhhhhhcCCCChH-----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch--hhHH-HHHHHHHHhh
Q 009975 74 TARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKT-DIMSIFEDLT 145 (521)
Q Consensus 74 ~~r~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~-~l~~~l~~l~ 145 (521)
.+|..++..++.+.....+. .+..+++.+.+.+.++++.+|..++.+++.++...+.. .... .+++.+....
T Consensus 196 ~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~ 275 (861)
T 2bpt_A 196 AVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATM 275 (861)
T ss_dssp HHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88988888877654433322 24568888888889999999999999999999877642 1233 6777888888
Q ss_pred cCCChhHHHHHHHHHHHHhhhcCh-------------------hhhhhhhHHHHHHhcC-------CCChHHHHHHHHHH
Q 009975 146 QDDQDSVRLLAVEGCAALGKLLEP-------------------QDCVAHILPVIVNFSQ-------DKSWRVRYMVANQL 199 (521)
Q Consensus 146 ~d~~~~vr~~a~~~l~~l~~~~~~-------------------~~~~~~l~~~l~~~~~-------d~~~~vR~~~~~~l 199 (521)
.|.++.+|..+++.+..+++.... ......++|.+...+. |++|.+|..+..++
T Consensus 276 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L 355 (861)
T 2bpt_A 276 KSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACL 355 (861)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHH
Confidence 899999999999999999876311 1123557777776654 34689999999999
Q ss_pred HHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhhhHHHHHhccCCcHHHHHHHHHH
Q 009975 200 YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASV 276 (521)
Q Consensus 200 ~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~ 276 (521)
+.++...+... .+.+++.+.+.+.+++|.+|.+|+.+++.+++..+++ .+.+.++|.+...+.|+++.||..++++
T Consensus 356 ~~l~~~~~~~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~ 434 (861)
T 2bpt_A 356 QLFAQNCGNHI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWC 434 (861)
T ss_dssp HHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHHHHccHhH-HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 99999887443 4678899999999999999999999999999876643 3456688889999999999999999999
Q ss_pred HHccccccCh----HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch---h---hHhhhHHHHHHHHhc--CCC
Q 009975 277 IMGMAPLLGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---D---LLSQSLLPAIVELAE--DRH 344 (521)
Q Consensus 277 l~~i~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~---~~~~~~~~~l~~~~~--~~~ 344 (521)
++.++..++. ....+.++|.+...++|+ +.||..++.++..+++.++. + .+.+.+++.+...+. |.+
T Consensus 435 l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~ 513 (861)
T 2bpt_A 435 IGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNE 513 (861)
T ss_dssp HHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCG
T ss_pred HHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcc
Confidence 9999887654 345678899999999887 99999999999999887651 2 233667777777776 445
Q ss_pred hHHHHHHHHHhHHHHhhhChhh--hHHHHHHHHHHHcCC---------------CcHHHHHHHHHHHHHHHHHhCHHH--
Q 009975 345 WRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQD---------------KVYSIRDAAANNLKRLAEEFGPEW-- 405 (521)
Q Consensus 345 ~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~l~~l~~~~~~~~-- 405 (521)
+.+|..++++++.++...+.+. +.+.++|.++..+.+ ....+|..++.+++.++..+|...
T Consensus 514 ~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 593 (861)
T 2bpt_A 514 FNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP 593 (861)
T ss_dssp GGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred hHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 8999999999999999988752 345677777666542 356789999999999999887642
Q ss_pred HHhhhHHHHHhhhcCcch-HHHHHHHHHHHHhhcccChHH--HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH
Q 009975 406 AMQHITPQVLEMINNPHY-LYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 482 (521)
Q Consensus 406 ~~~~l~~~l~~~l~~~~~-~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~ 482 (521)
+.+.+++.+...+++.++ .+|..++.+++.++...|... +.+.++|.+...++++.+.+|..++.+++.++...|..
T Consensus 594 ~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~ 673 (861)
T 2bpt_A 594 VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED 673 (861)
T ss_dssp GHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchh
Confidence 346788888888888777 899999999999998777643 46789999999999999999999999999999888753
Q ss_pred --HHHhhHHHHHHHhcCCC--CccHHHHHHHHHHHHHHhhcc
Q 009975 483 --MVEKTIRPCLVELTEDP--DVDVRFFATQAIQSIDHVMMS 520 (521)
Q Consensus 483 --~~~~~~~~~l~~l~~D~--~~~vr~~a~~al~~l~~~~~~ 520 (521)
.+...++|.+.+.+.|+ ++++|..+..+++.+...++.
T Consensus 674 ~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 674 FRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp GHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred ccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence 24467777777766665 489999999999999887653
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.4e-32 Score=302.04 Aligned_cols=501 Identities=13% Similarity=0.105 Sum_probs=399.0
Q ss_pred hHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChH---
Q 009975 17 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--- 93 (521)
Q Consensus 17 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~--- 93 (521)
....+++.+.+.+.++++.+|..|+.+++.+++.++++ ..+.+++.+.....+++..+|..++..++.+.....+.
T Consensus 45 ~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~-~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 45 SERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY-QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH-HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 34566777777777899999999999999999988774 44678888877777777788988888887776555443
Q ss_pred ------HHHHHHHHHHHhcC-CCChHHHHHHHHhHHHHHHhhCch--hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 009975 94 ------LKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG 164 (521)
Q Consensus 94 ------~~~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~ 164 (521)
..+.++|.+...+. ++++.+|..++..++.++...+.. .+.+.+++.+...+.+++..||..|+.+++.++
T Consensus 124 ~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~ 203 (1230)
T 1u6g_C 124 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV 203 (1230)
T ss_dssp CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 58899999999888 488999999999999999876642 356788899999999999999999999999999
Q ss_pred hhcChhhhhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHH
Q 009975 165 KLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 241 (521)
Q Consensus 165 ~~~~~~~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 241 (521)
...+++ ..+.+++.+...+. +.++.+|..++++++.++...+... ..+.++|.+.+.+.|++++||..++.+++.+
T Consensus 204 ~~~~~~-~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l 282 (1230)
T 1u6g_C 204 MSCGNI-VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESF 282 (1230)
T ss_dssp TTC-----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHH
T ss_pred HhcCHH-HHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 887654 34455666555443 3345788999999999998876532 2368999999999999999999999999999
Q ss_pred HhhhCHH--HHHHhhhHHHHHhcc-------------------------------------CCcHHHHHHHHHHHHcccc
Q 009975 242 CRILNPE--LAIQHILPCVKELSS-------------------------------------DSSQHVRSALASVIMGMAP 282 (521)
Q Consensus 242 ~~~~~~~--~~~~~~~~~l~~~~~-------------------------------------d~~~~vr~~~~~~l~~i~~ 282 (521)
+...+.+ .+.+.++|.+...+. |.+|.+|.+++.++..++.
T Consensus 283 ~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~ 362 (1230)
T 1u6g_C 283 VRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVS 362 (1230)
T ss_dssp HHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHT
T ss_pred HHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHH
Confidence 9987653 455667776655432 2357899999999999988
Q ss_pred ccCh--HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch---------------------hhHhhhHHHHHHHH
Q 009975 283 LLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---------------------DLLSQSLLPAIVEL 339 (521)
Q Consensus 283 ~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---------------------~~~~~~~~~~l~~~ 339 (521)
..++ ..+.+.++|.+...++|.++.||..++.++..++...+. +.+.+.++|.+.+.
T Consensus 363 ~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~ 442 (1230)
T 1u6g_C 363 TRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQ 442 (1230)
T ss_dssp TCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHH
Confidence 7765 455678899999999999999999999999988876542 22346677777788
Q ss_pred hcCCChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHhCHHH---HHhhhHH
Q 009975 340 AEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVY--SIRDAAANNLKRLAEEFGPEW---AMQHITP 412 (521)
Q Consensus 340 ~~~~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~---~~~~l~~ 412 (521)
+++++|++|..++..++.++..++.. .+.+.++|.+...++|+++ .+|..++..++.+....|.+. +.+.++|
T Consensus 443 l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp 522 (1230)
T 1u6g_C 443 MKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVP 522 (1230)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHH
T ss_pred hccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHH
Confidence 99999999999999999999886542 4567899999999999875 899999999999988777653 4578999
Q ss_pred HHHhhhcCcchHHHHHHHHHHHHhhcccCh---------HHHhhcHHHHHHhhc--CCCCchHHHHHHHHHHHHHhhhch
Q 009975 413 QVLEMINNPHYLYRMTILRAISLLAPVMGS---------EITCSRLLPVVINAS--KDRVPNIKFNVAKVLQSLIPIVDQ 481 (521)
Q Consensus 413 ~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---------~~~~~~il~~l~~~l--~d~~~~VR~~a~~~l~~~~~~~~~ 481 (521)
.+...++|+++++|..++.+++.+++.+|. ..+.+.++|.++..+ .|.++.||..++.+++.++...|.
T Consensus 523 ~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~ 602 (1230)
T 1u6g_C 523 PVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGD 602 (1230)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999987765 245688999999988 788999999999999999887654
Q ss_pred HH------------------------------------------HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975 482 SM------------------------------------------VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 519 (521)
Q Consensus 482 ~~------------------------------------------~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~ 519 (521)
.. +...++|.+...+.|.+.++|.++..+++.+....+
T Consensus 603 ~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~ 682 (1230)
T 1u6g_C 603 NLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYS 682 (1230)
T ss_dssp GCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 21 123455555566677899999999999999887654
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.3e-31 Score=283.39 Aligned_cols=500 Identities=15% Similarity=0.133 Sum_probs=392.6
Q ss_pred HHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChH----
Q 009975 18 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---- 93 (521)
Q Consensus 18 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~---- 93 (521)
...+-+.+.+.+.++++.+|..+..+++.++..-++ ..+..++|.+.+...+++..+|..++..++.++...++.
T Consensus 88 ~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~ 166 (852)
T 4fdd_A 88 TDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSD 166 (852)
T ss_dssp HHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchh
Confidence 344555666667788999999999999999987644 447889999999988877788888887777766544433
Q ss_pred ----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch--hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhc
Q 009975 94 ----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL 167 (521)
Q Consensus 94 ----~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~ 167 (521)
....+++.+.++++++++.||..|+.++..++...+.. ...+.+++.+..+.+|+++.+|..+++++..+++..
T Consensus 167 ~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~ 246 (852)
T 4fdd_A 167 VLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVR 246 (852)
T ss_dssp SSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHC
T ss_pred hhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC
Confidence 15678888989999999999999999998877543321 234577888888889999999999999999999876
Q ss_pred Chh--hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC--C--CccccchHHHHHHhc-----------CC-----
Q 009975 168 EPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--P--EPTRMDLVPAYVRLL-----------RD----- 225 (521)
Q Consensus 168 ~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~--~--~~~~~~l~~~l~~~l-----------~d----- 225 (521)
++. ...+.+++.+....+|.++.||..+++.+..+++... . ......++|.+.+.+ .|
T Consensus 247 ~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~ 326 (852)
T 4fdd_A 247 MDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGS 326 (852)
T ss_dssp HHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccc
Confidence 542 2345588888899999999999999999887764210 0 112346788888776 34
Q ss_pred ------ChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChH--HHHHhHHHHH
Q 009975 226 ------NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIF 297 (521)
Q Consensus 226 ------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~--~~~~~l~~~l 297 (521)
.+|.+|.+|..+++.++...+. ...+.++|.+.+.+.+++|++|.+++.+++.++...++. ...+.++|.+
T Consensus 327 ~~dd~~~~~~vr~~a~~~L~~la~~~~~-~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l 405 (852)
T 4fdd_A 327 GGDDTISDWNLRKCSAAALDVLANVYRD-ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHL 405 (852)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 4567999999999999998874 456778999999999999999999999999999877652 2457789999
Q ss_pred HHhhcCCChHHHHHHHHHHHHhhhhhchh---hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh--hhHHHHH
Q 009975 298 LSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLG 372 (521)
Q Consensus 298 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~ 372 (521)
..+++|+++.||..++.+++.++..++.. .+...+++.+.+.+.|+++.+|..++.++..+++..+.. .+.+.++
T Consensus 406 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll 485 (852)
T 4fdd_A 406 IQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYIL 485 (852)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHH
Confidence 99999999999999999999999876542 234678888888889999999999999999999888764 4567888
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHH----HHhhhHHHHHh---hhcCcchHHHHHHHHHHHHhhcccChHH-
Q 009975 373 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW----AMQHITPQVLE---MINNPHYLYRMTILRAISLLAPVMGSEI- 444 (521)
Q Consensus 373 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~---~l~~~~~~~r~~a~~~l~~l~~~~~~~~- 444 (521)
+.+...+++.+......++.+++.++...|... +.+.++|.+.+ .+.+++..+| .++++++.++..+|...
T Consensus 486 ~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~ 564 (852)
T 4fdd_A 486 DTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFL 564 (852)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHH
Confidence 888888888777777778899999987776432 45677787774 4566666666 78999999998877643
Q ss_pred -HhhcHHHHHHhhc-----------------CCCCchHHHHHHHHHHHHHhhhchHHH----HhhHHHHHHHhcCCCCcc
Q 009975 445 -TCSRLLPVVINAS-----------------KDRVPNIKFNVAKVLQSLIPIVDQSMV----EKTIRPCLVELTEDPDVD 502 (521)
Q Consensus 445 -~~~~il~~l~~~l-----------------~d~~~~VR~~a~~~l~~~~~~~~~~~~----~~~~~~~l~~l~~D~~~~ 502 (521)
+.+.+++.++..+ ..++..+|..++.+++.++..+|.+.. ...+++.+..+..|++++
T Consensus 565 ~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~ 644 (852)
T 4fdd_A 565 PYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPE 644 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChh
Confidence 2344444333332 233667999999999999999885422 256899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 009975 503 VRFFATQAIQSIDHVMMS 520 (521)
Q Consensus 503 vr~~a~~al~~l~~~~~~ 520 (521)
||..+..+++.+.+.+++
T Consensus 645 vr~~a~~~l~~l~~~~~~ 662 (852)
T 4fdd_A 645 VRQSSFALLGDLTKACFQ 662 (852)
T ss_dssp HHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 999999999999876653
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1e-31 Score=295.07 Aligned_cols=514 Identities=13% Similarity=0.156 Sum_probs=387.4
Q ss_pred hhhhhccccCCCcchhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChh--------HHHHhHHHHHHHhhc-CCC
Q 009975 2 AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--------DLVDWYIPLVKRLAA-GEW 72 (521)
Q Consensus 2 a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~--------~~~~~l~p~i~~~~~-~~~ 72 (521)
+.+|+.++..++. ++++.+++.+...+.++++.+|..+..+++.++..++++ ..++.++|.+.+..+ +++
T Consensus 69 ~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~ 147 (1230)
T 1u6g_C 69 VKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED 147 (1230)
T ss_dssp HHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc
Confidence 3567888887764 677788888888888889999999999999999998875 367899999988887 467
Q ss_pred CcchhhhhhhhhhhcC----CCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhh-cC
Q 009975 73 FTARVSACGLFHIAYP----SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT-QD 147 (521)
Q Consensus 73 ~~~r~~~~~~~~~~~~----~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~-~d 147 (521)
..+|..++..+..+.. .+.+ ....+++.+...+.++++.||..|+.+++.++...+... .+.+++.+...+ .+
T Consensus 148 ~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l~~~L~~~ 225 (1230)
T 1u6g_C 148 VSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIEHLLSELSKN 225 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhccC
Confidence 7888888877766552 2333 367889999998999999999999999999998776543 334455444444 33
Q ss_pred CChhHHHHHHHHHHHHhhhcChh--hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhc
Q 009975 148 DQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLL 223 (521)
Q Consensus 148 ~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l 223 (521)
++..+|..++++++.++...++. .+.+.++|.+...++|+++.+|..++.+++.++...+.+. ..+.++|.+.+.+
T Consensus 226 ~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l 305 (1230)
T 1u6g_C 226 DSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYL 305 (1230)
T ss_dssp CSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCC
T ss_pred CchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHh
Confidence 34578888999999999887653 2346789999999999999999999999999998777653 2345666666554
Q ss_pred C-------------------------------------CChHHHHHHHHHhHHHHHhhhCH--HHHHHhhhHHHHHhccC
Q 009975 224 R-------------------------------------DNEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSD 264 (521)
Q Consensus 224 ~-------------------------------------d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d 264 (521)
. |..|.||.+|+.++..++...+. ..+.+.++|.+...+.|
T Consensus 306 ~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d 385 (1230)
T 1u6g_C 306 TYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKE 385 (1230)
T ss_dssp CCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSC
T ss_pred CCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCC
Confidence 2 11367899999999999886654 45667788888888888
Q ss_pred CcHHHHHHHHHHHHccccccCh---------------------HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhh
Q 009975 265 SSQHVRSALASVIMGMAPLLGK---------------------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 323 (521)
Q Consensus 265 ~~~~vr~~~~~~l~~i~~~~~~---------------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 323 (521)
+++.||..++.+++.+....+. ....+.++|.+.+.++|+++.+|..++..++.++...
T Consensus 386 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~ 465 (1230)
T 1u6g_C 386 REENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVL 465 (1230)
T ss_dssp SSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred CchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Confidence 8999999988888777654432 1234566777777799999999999999998887764
Q ss_pred chh--hHhhhHHHHHHHHhcCCCh--HHHHHHHHHhHHHHhhhChhh---hHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 009975 324 GID--LLSQSLLPAIVELAEDRHW--RVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKR 396 (521)
Q Consensus 324 ~~~--~~~~~~~~~l~~~~~~~~~--~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 396 (521)
+.. ...+.++|.+.+.++|+++ .+|..++..+..+.+..|++. +.+.++|.++..++|+++.||..++.+++.
T Consensus 466 ~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~ 545 (1230)
T 1u6g_C 466 PGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQ 545 (1230)
T ss_dssp TTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 321 2336788888888888775 888888888888888777764 344578888888899999998888889998
Q ss_pred HHHHhCH---------HHHHhhhHHHHHhhh--cCcchHHHHHHHHHHHHhhcccChHH---------------------
Q 009975 397 LAEEFGP---------EWAMQHITPQVLEMI--NNPHYLYRMTILRAISLLAPVMGSEI--------------------- 444 (521)
Q Consensus 397 l~~~~~~---------~~~~~~l~~~l~~~l--~~~~~~~r~~a~~~l~~l~~~~~~~~--------------------- 444 (521)
+++.+|. ..+.+.++|.+...+ .|.++.+|..++.+++.++...|...
T Consensus 546 l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r 625 (1230)
T 1u6g_C 546 LVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITR 625 (1230)
T ss_dssp HHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHH
T ss_pred HHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhH
Confidence 8888765 234567888888877 67788899999999998887655321
Q ss_pred ---------------------HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHH---hcCCCC
Q 009975 445 ---------------------TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE---LTEDPD 500 (521)
Q Consensus 445 ---------------------~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~---l~~D~~ 500 (521)
+.+.++|.+...+.|.++.+|.+++.+++.++...+.....+.+.|.+.. +.+|+|
T Consensus 626 ~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D 705 (1230)
T 1u6g_C 626 LTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESD 705 (1230)
T ss_dssp HHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTC
T ss_pred HHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcch
Confidence 22345556666667788899999999999999887654334556666654 467889
Q ss_pred ccHHHHHHHHHHHHHHhh
Q 009975 501 VDVRFFATQAIQSIDHVM 518 (521)
Q Consensus 501 ~~vr~~a~~al~~l~~~~ 518 (521)
..++..+..++..+.+..
T Consensus 706 ~~~~~~~~~~L~~l~~~~ 723 (1230)
T 1u6g_C 706 MHVSQMAISFLTTLAKVY 723 (1230)
T ss_dssp HHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 999998888888876543
No 8
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=3.5e-30 Score=274.04 Aligned_cols=499 Identities=15% Similarity=0.090 Sum_probs=395.5
Q ss_pred HhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCC-CCcchhhhhhhhhhhcCCCC------
Q 009975 19 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAP------ 91 (521)
Q Consensus 19 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~-~~~~r~~~~~~~~~~~~~~~------ 91 (521)
..+-+.+.+.+.++++.+|..+..++..++....+..-+..++|.+.+...++ +..+|..++..++.+.....
T Consensus 94 ~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~ 173 (861)
T 2bpt_A 94 NQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQAL 173 (861)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTT
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHH
Confidence 34555566666778899999999999999998766545788999999988876 77788888877766654332
Q ss_pred hHHHHHHHHHHHHhcCCC--ChHHHHHHHHhHHHHHHhhCc----hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 009975 92 DILKTELRSIYTQLCQDD--MPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK 165 (521)
Q Consensus 92 ~~~~~~l~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 165 (521)
......+++.+...+.++ ++.||..++++++.++..++. ....+.+++.+.....++++.+|..+++++..++.
T Consensus 174 ~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~ 253 (861)
T 2bpt_A 174 VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS 253 (861)
T ss_dssp GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 224778888888888887 899999999999987654332 12345688888888889999999999999999998
Q ss_pred hcChh--hhhh-hhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC----------------CCc---cccchHHHHHHhc
Q 009975 166 LLEPQ--DCVA-HILPVIVNFSQDKSWRVRYMVANQLYELCEAVG----------------PEP---TRMDLVPAYVRLL 223 (521)
Q Consensus 166 ~~~~~--~~~~-~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~----------------~~~---~~~~l~~~l~~~l 223 (521)
..++. .... .+++.+...+.|.+..+|..+++.+..++.... ... ....++|.+...+
T Consensus 254 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l 333 (861)
T 2bpt_A 254 KYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLL 333 (861)
T ss_dssp HHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 76542 2334 778888888999999999999999988877531 111 1145778887777
Q ss_pred CC-------ChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHH---HHHhH
Q 009975 224 RD-------NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQL 293 (521)
Q Consensus 224 ~d-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~---~~~~l 293 (521)
.+ +++.+|.++..+++.++...+. ...+.++|.+.+.+.+.+|++|.+++.+++.++...+.+. ..+.+
T Consensus 334 ~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~i 412 (861)
T 2bpt_A 334 TRQNEDPEDDDWNVSMSAGACLQLFAQNCGN-HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQA 412 (861)
T ss_dssp TCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHH
T ss_pred HhcccccccccCcHHHHHHHHHHHHHHHccH-hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 53 4578999999999999998874 4456788999999999999999999999999998776322 34578
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhhhhch----hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh-----
Q 009975 294 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI----DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----- 364 (521)
Q Consensus 294 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~----- 364 (521)
+|.+...++|+++.||..++.+++.++..++. ..+.+.++|.+.+.++|+ +.+|..++.++..+++.++.
T Consensus 413 l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~ 491 (861)
T 2bpt_A 413 LPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSP 491 (861)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCG
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchh
Confidence 89999999999999999999999999988764 234578899998888886 99999999999999988762
Q ss_pred -hhhHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcC---------------cchH
Q 009975 365 -GFFDDKLGALCMQWLQ--DKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINN---------------PHYL 424 (521)
Q Consensus 365 -~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~~---------------~~~~ 424 (521)
..+.+.+++.+...++ |.++.+|..++.+++.++...+.+. +...++|.+.+.+.+ ....
T Consensus 492 l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~ 571 (861)
T 2bpt_A 492 IYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQE 571 (861)
T ss_dssp GGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHH
Confidence 2455778888888887 5558999999999999999887642 234566666655432 2456
Q ss_pred HHHHHHHHHHHhhcccChH--HHhhcHHHHHHhhcCCCCc-hHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCC
Q 009975 425 YRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVP-NIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDP 499 (521)
Q Consensus 425 ~r~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d~~~-~VR~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~D~ 499 (521)
+|..++.+++.++..+|.. .+.+.+++.+...+++..+ .+|..++.+++.++...+.. .+.+.++|.+.+.++++
T Consensus 572 ~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~ 651 (861)
T 2bpt_A 572 LQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQV 651 (861)
T ss_dssp HHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc
Confidence 8899999999999888764 2456788999999988877 89999999999999887764 34577889888877899
Q ss_pred CccHHHHHHHHHHHHHHhhc
Q 009975 500 DVDVRFFATQAIQSIDHVMM 519 (521)
Q Consensus 500 ~~~vr~~a~~al~~l~~~~~ 519 (521)
++++|..+..+++.+.+.++
T Consensus 652 ~~~vr~~a~~~l~~l~~~~~ 671 (861)
T 2bpt_A 652 DSPVSITAVGFIADISNSLE 671 (861)
T ss_dssp TSHHHHHHHHHHHHHHHHTG
T ss_pred cHHHHHHHHHHHHHHHHHhc
Confidence 99999999999998887665
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=9e-31 Score=279.10 Aligned_cols=517 Identities=15% Similarity=0.117 Sum_probs=397.1
Q ss_pred hhhhhccccCCCcchhHHhhhhHHhhhhcCc--hhHHHHHHHHHHHHHHhhcChhHH---HHhHHHHHHHhhcCC--CCc
Q 009975 2 AEELGVFIPYVGGVEHAHVLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMRESDL---VDWYIPLVKRLAAGE--WFT 74 (521)
Q Consensus 2 a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~--~~~vR~~a~~~l~~i~~~~~~~~~---~~~l~p~i~~~~~~~--~~~ 74 (521)
+..++.++...+...+++.+++.+.+.++++ ++.+|..++++++.+++.++++.+ ...+++.+.+...++ +..
T Consensus 110 ~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~ 189 (876)
T 1qgr_A 110 SQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNN 189 (876)
T ss_dssp HHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHH
T ss_pred HHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHH
Confidence 3455666555443366788899998888888 899999999999999998765433 356667777766655 567
Q ss_pred chhhhhhhhhhhcCCCChH-----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch--hhHH-HHHHHHHHhhc
Q 009975 75 ARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKT-DIMSIFEDLTQ 146 (521)
Q Consensus 75 ~r~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~-~l~~~l~~l~~ 146 (521)
+|..++..++.+....++. ....+++.+..++.++++.+|..++++++.++...+.. .... .+++.+.....
T Consensus 190 vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 269 (876)
T 1qgr_A 190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK 269 (876)
T ss_dssp HHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888877766544322 12457888888888999999999999999999876542 2233 77888888888
Q ss_pred CCChhHHHHHHHHHHHHhhhcCh--------------------h---hhhhhhHHHHHHhcC-------CCChHHHHHHH
Q 009975 147 DDQDSVRLLAVEGCAALGKLLEP--------------------Q---DCVAHILPVIVNFSQ-------DKSWRVRYMVA 196 (521)
Q Consensus 147 d~~~~vr~~a~~~l~~l~~~~~~--------------------~---~~~~~l~~~l~~~~~-------d~~~~vR~~~~ 196 (521)
+.++.+|..+++.+..+++.... . .....++|.+...+. |.+|.+|..++
T Consensus 270 ~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~ 349 (876)
T 1qgr_A 270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG 349 (876)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHH
Confidence 88999999999999998865310 0 012456666666553 46789999999
Q ss_pred HHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhhhHHHHHhccCCcHHHHHHH
Q 009975 197 NQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSAL 273 (521)
Q Consensus 197 ~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~ 273 (521)
.+++.++...+... .+.++|.+.+.+.|++|.+|.+|+.+++.++...+++ .+.+.++|.+...+.|+++.||..+
T Consensus 350 ~~l~~l~~~~~~~~-~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a 428 (876)
T 1qgr_A 350 VCLMLLATCCEDDI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTA 428 (876)
T ss_dssp HHHHHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHHHCcHhh-HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999887433 4678888899999999999999999999999877643 3456788999999999999999999
Q ss_pred HHHHHccccccCh----HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc----------------hhhHhhhHH
Q 009975 274 ASVIMGMAPLLGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG----------------IDLLSQSLL 333 (521)
Q Consensus 274 ~~~l~~i~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~----------------~~~~~~~~~ 333 (521)
+++++.++..++. ....+.+++.+...+.|+ +.||..++.++..++...+ ...+.+.++
T Consensus 429 ~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il 507 (876)
T 1qgr_A 429 AWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIV 507 (876)
T ss_dssp HHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHH
T ss_pred HHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHH
Confidence 9999999887654 245678899999999886 9999999999999987765 112346788
Q ss_pred HHHHHHhcCC---ChHHHHHHHHHhHHHHhhhChhh--hHHHHHHHHHHHcC-----------CCc----HHHHHHHHHH
Q 009975 334 PAIVELAEDR---HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQ-----------DKV----YSIRDAAANN 393 (521)
Q Consensus 334 ~~l~~~~~~~---~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~-----------d~~----~~vr~~a~~~ 393 (521)
|.+...+.+. ++.+|..++++++.++...|.+. +.+.++|.+...+. +.+ +++|..++.+
T Consensus 508 ~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 587 (876)
T 1qgr_A 508 QKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCAT 587 (876)
T ss_dssp HHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHH
Confidence 8888887664 57899999999999999988642 33556666665543 333 5688999999
Q ss_pred HHHHHHHhC-HHH--HHhhhHHHHHhhhcCcc--hHHHHHHHHHHHHhhcccChHH--HhhcHHHHHHhhcCCC-CchHH
Q 009975 394 LKRLAEEFG-PEW--AMQHITPQVLEMINNPH--YLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDR-VPNIK 465 (521)
Q Consensus 394 l~~l~~~~~-~~~--~~~~l~~~l~~~l~~~~--~~~r~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~d~-~~~VR 465 (521)
++.++..+| ... +...++|.+...+++++ +.+|..++.+++.++...|... +.+.++|.+...+.+. .+.||
T Consensus 588 l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr 667 (876)
T 1qgr_A 588 LQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVC 667 (876)
T ss_dssp HHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHH
T ss_pred HHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHH
Confidence 999998888 443 34668888888887764 5789999999999998766543 4577889999999887 89999
Q ss_pred HHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCC--CCccHHHHHHHHHHHHHHhhcc
Q 009975 466 FNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTED--PDVDVRFFATQAIQSIDHVMMS 520 (521)
Q Consensus 466 ~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~D--~~~~vr~~a~~al~~l~~~~~~ 520 (521)
..++.+++.++...+.. .+...+++.+.+.+++ .+.++|..+..+++.+...++.
T Consensus 668 ~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~ 726 (876)
T 1qgr_A 668 LAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG 726 (876)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhch
Confidence 99999999999887753 2346777777776554 5678999999999999886654
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=1.1e-28 Score=262.92 Aligned_cols=517 Identities=14% Similarity=0.137 Sum_probs=373.9
Q ss_pred hhhhccccCCCcch----hHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChh---HHHHhHHHHHHHhhcCCCCcc
Q 009975 3 EELGVFIPYVGGVE----HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES---DLVDWYIPLVKRLAAGEWFTA 75 (521)
Q Consensus 3 ~~l~~~~~~~~~~~----~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~---~~~~~l~p~i~~~~~~~~~~~ 75 (521)
++++.++.+++... ....+++.+.....+++..+|..+++++..+++..+.. .+...+++.+.....++...+
T Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v 275 (876)
T 1qgr_A 196 NALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEV 275 (876)
T ss_dssp HHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 45666666655321 11236777777778888999999999999999876532 222267777777666666677
Q ss_pred hhhhhhhhhhhcCC---------------------CChH---HHHHHHHHHHHhcC-------CCChHHHHHHHHhHHHH
Q 009975 76 RVSACGLFHIAYPS---------------------APDI---LKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKF 124 (521)
Q Consensus 76 r~~~~~~~~~~~~~---------------------~~~~---~~~~l~~~l~~l~~-------~~~~~vr~~a~~~l~~l 124 (521)
|..++..+..+... .... ....+++.+.+.+. ++++.+|+++..+++.+
T Consensus 276 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l 355 (876)
T 1qgr_A 276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL 355 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHH
Confidence 77776655444321 0111 23566776666553 45789999999999999
Q ss_pred HHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh---hhhhhhHHHHHHhcCCCChHHHHHHHHHHHH
Q 009975 125 AATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYE 201 (521)
Q Consensus 125 ~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~ 201 (521)
+...+ +...+.++|.+...+.|+++.+|..|+.+++.+++..+++ .....++|.+...++|+++.||..++.++++
T Consensus 356 ~~~~~-~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~ 434 (876)
T 1qgr_A 356 ATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGR 434 (876)
T ss_dssp HHHHG-GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHCc-HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99887 4556788899988899999999999999999999877633 2445688888889999999999999999999
Q ss_pred HHHHhCCC----ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC----------------HHHHHHhhhHHHHHh
Q 009975 202 LCEAVGPE----PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN----------------PELAIQHILPCVKEL 261 (521)
Q Consensus 202 i~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----------------~~~~~~~~~~~l~~~ 261 (521)
++...+.. .....+++.+.+.+.|+ +.||..++.++..++...+ -..+.+.++|.+...
T Consensus 435 ~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~ 513 (876)
T 1qgr_A 435 ICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLET 513 (876)
T ss_dssp HHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHH
T ss_pred HHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHH
Confidence 99876542 23457888888888886 8899999999998887643 112345566666665
Q ss_pred ccCC---cHHH--------------------------------------------------------HHHHHHHHHcccc
Q 009975 262 SSDS---SQHV--------------------------------------------------------RSALASVIMGMAP 282 (521)
Q Consensus 262 ~~d~---~~~v--------------------------------------------------------r~~~~~~l~~i~~ 282 (521)
+.+. ++.+ |..++.+++.++.
T Consensus 514 l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~ 593 (876)
T 1qgr_A 514 TDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLR 593 (876)
T ss_dssp TTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 5432 2233 4444555555555
Q ss_pred ccC-hHH--HHHhHHHHHHHhhcCCC--hHHHHHHHHHHHHhhhhhchhh--HhhhHHHHHHHHhcCC-ChHHHHHHHHH
Q 009975 283 LLG-KDA--TIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDR-HWRVRLAIIEY 354 (521)
Q Consensus 283 ~~~-~~~--~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~~~~~--~~~~~~~~l~~~~~~~-~~~vr~~~~~~ 354 (521)
.+| ... +...++|.+...+++.. +.+|..++.+++.++...|... +.+.++|.+...+.+. ++.+|..++.+
T Consensus 594 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~ 673 (876)
T 1qgr_A 594 KVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGL 673 (876)
T ss_dssp TSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 555 321 24567778888887764 4789999999999988766432 2366788888888876 89999999999
Q ss_pred hHHHHhhhChh--hhHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCcc------
Q 009975 355 IPLLASQLGVG--FFDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPH------ 422 (521)
Q Consensus 355 l~~l~~~~~~~--~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~~~~------ 422 (521)
++.++..+|.. .+.+.+++.+...+++ .+..+|..++.+++.++..+|.++ +...++|.+...+.++.
T Consensus 674 l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~ 753 (876)
T 1qgr_A 674 VGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYD 753 (876)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChH
Confidence 99999988764 3356788888888876 467899999999999999888763 24567777777665432
Q ss_pred -----hHHHHHHHHHHHHhhcccCh---------HH---HhhcHHHHHHhhcCCC--CchHHHHHHHHHHHHHhhhch-H
Q 009975 423 -----YLYRMTILRAISLLAPVMGS---------EI---TCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQ-S 482 (521)
Q Consensus 423 -----~~~r~~a~~~l~~l~~~~~~---------~~---~~~~il~~l~~~l~d~--~~~VR~~a~~~l~~~~~~~~~-~ 482 (521)
..+|..++.++..++..+|. .. +.+.+++.+.....|+ ...||..|+.+++.++...|. .
T Consensus 754 ~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 833 (876)
T 1qgr_A 754 MVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDV 833 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHH
Confidence 37899999999988775542 11 3355666666666777 679999999999999998876 3
Q ss_pred H--H-HhhHHHHHHH-hcCCCCccHHHHHHHHHHHHHHhhccC
Q 009975 483 M--V-EKTIRPCLVE-LTEDPDVDVRFFATQAIQSIDHVMMSS 521 (521)
Q Consensus 483 ~--~-~~~~~~~l~~-l~~D~~~~vr~~a~~al~~l~~~~~~~ 521 (521)
. + .+.+++.+.+ .+.|++++||..|++|++.+.++-.+|
T Consensus 834 ~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~~~~ 876 (876)
T 1qgr_A 834 LKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLKNQA 876 (876)
T ss_dssp HHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHhhcCC
Confidence 2 2 3445565555 778999999999999999999876654
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.95 E-value=7.2e-25 Score=216.03 Aligned_cols=388 Identities=14% Similarity=0.126 Sum_probs=296.1
Q ss_pred HHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcC--CChhHHHHHHHHHHHHhhhc---------
Q 009975 99 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DQDSVRLLAVEGCAALGKLL--------- 167 (521)
Q Consensus 99 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--~~~~vr~~a~~~l~~l~~~~--------- 167 (521)
...+.. +.++++.+|+.|.+.|..+...- .+.+.+.+...+.+ .+..+|..|...+.++...-
T Consensus 4 ~~~L~~-~~s~d~~~r~~Ae~~L~~~~~~~-----~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (462)
T 1ibr_B 4 ITILEK-TVSPDRLELEAAQKFLERAAVEN-----LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (462)
T ss_dssp HHHHHH-TTCSCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHHH-hcCCCHHHHHHHHHHHHHHHhhC-----hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHH
Confidence 334444 45778999999999999865421 12233333333333 36789999999999986431
Q ss_pred -----ChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC--hHHHHHHHHHhHHH
Q 009975 168 -----EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN--EAEVRIAAAGKVTK 240 (521)
Q Consensus 168 -----~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~ 240 (521)
-++.....+...+...+.++++.+ ..++.+++.++....++..+++++|.+.+.+.++ ++.+|..++.+|+.
T Consensus 78 ~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 78 QRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 122344557777777788888888 8999999999987655445789999999999988 89999999999999
Q ss_pred HHhhhCHH---HHHHhhhHHHHHhccCC--cHHHHHHHHHHHHccccccChHH----HHHhHHHHHHHhhcCCChHHHHH
Q 009975 241 FCRILNPE---LAIQHILPCVKELSSDS--SQHVRSALASVIMGMAPLLGKDA----TIEQLLPIFLSLLKDEFPDVRLN 311 (521)
Q Consensus 241 l~~~~~~~---~~~~~~~~~l~~~~~d~--~~~vr~~~~~~l~~i~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~ 311 (521)
+.+...++ .+.+.+++.+...+.|. ++.||..++++++.+...++... ..+.+++.+...+.++++++|..
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~ 236 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 236 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99866322 33456788888888888 79999999999998776554221 23456888888889999999999
Q ss_pred HHHHHHHhhhhhchh--hHhh-hHHHHHHHHhcCCChHHHHHHHHHhHHHHhhh-------------------C-hhh--
Q 009975 312 IISKLDQVNQVIGID--LLSQ-SLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-------------------G-VGF-- 366 (521)
Q Consensus 312 a~~~l~~~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~-------------------~-~~~-- 366 (521)
++.++..+....+.. .... .+++.+....++.+..+|..+++.+..+++.. . ...
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (462)
T 1ibr_B 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK 316 (462)
T ss_dssp HHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHH
Confidence 999999998765532 1235 78888888888999999999999998887653 0 111
Q ss_pred -hHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhc
Q 009975 367 -FDDKLGALCMQWLQ-------DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP 438 (521)
Q Consensus 367 -~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~ 438 (521)
+.+.++|.++..+. |.++.+|.+|..+++.++..+|. .....++|.+...+++++|++|.+++.+++.++.
T Consensus 317 ~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~ 395 (462)
T 1ibr_B 317 GALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (462)
T ss_dssp HHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 23668888888774 34678999999999999999984 4557789999999999999999999999999998
Q ss_pred ccChH---HHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHH----HHhhHHHHHHH
Q 009975 439 VMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM----VEKTIRPCLVE 494 (521)
Q Consensus 439 ~~~~~---~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~----~~~~~~~~l~~ 494 (521)
..+.+ .+.+.++|.+...+.|+++.||.+|+++++.++..+++.. +.+.++|.|.+
T Consensus 396 ~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~ 458 (462)
T 1ibr_B 396 GPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 458 (462)
T ss_dssp SSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 65532 2457899999999999999999999999999999887632 33445554443
No 12
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.94 E-value=7.6e-24 Score=212.44 Aligned_cols=476 Identities=15% Similarity=0.077 Sum_probs=316.5
Q ss_pred hhhccccCCCcchhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhh
Q 009975 4 ELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLF 83 (521)
Q Consensus 4 ~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~ 83 (521)
+++.|.+|.|++.+....++.|..+++++++.+|..|+..+..++..-+.. ..+.
T Consensus 1 a~~~l~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~---~~~~---------------------- 55 (529)
T 1jdh_A 1 AVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR---HAIM---------------------- 55 (529)
T ss_dssp CCCSCC----------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHH---HHHH----------------------
T ss_pred ChHHHhhcCchhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccH---HHHH----------------------
Confidence 467899999999888888999999999999999999999999998742211 0000
Q ss_pred hhhcCCCChHHHHHHHHHHHHhc-CCCChHHHHHHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcCCChhHHHHHHHHH
Q 009975 84 HIAYPSAPDILKTELRSIYTQLC-QDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGC 160 (521)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~l~~l~-~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l 160 (521)
. ....++.+.+++ .++++.+|..++.+|..++..... .......+|.+.+++.++++.++..|+.+|
T Consensus 56 -----~-----~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L 125 (529)
T 1jdh_A 56 -----R-----SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 125 (529)
T ss_dssp -----T-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred -----h-----CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 0 011233333333 234678888888888877543211 112335677888888888888899999999
Q ss_pred HHHhhhcChh---hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHh---CCCccccchHHHHHHhcCCCh-HHHHHH
Q 009975 161 AALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRMDLVPAYVRLLRDNE-AEVRIA 233 (521)
Q Consensus 161 ~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~---~~~~~~~~l~~~l~~~l~d~~-~~vr~~ 233 (521)
..++..-+.. ......+|.+..++.++++.+|..++.++..++..- .........++.+.+++++.+ ..++..
T Consensus 126 ~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~ 205 (529)
T 1jdh_A 126 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 205 (529)
T ss_dssp HHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHH
Confidence 9888763321 123457888888888889999998888888776310 001122356777777776554 455666
Q ss_pred HHHhHHHHHhhhCHH--HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHH
Q 009975 234 AAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLN 311 (521)
Q Consensus 234 a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~ 311 (521)
+..+|..++..-... ......++.+..++.+.+..++..+++++..++...+.......++|.+.+++.++++++|..
T Consensus 206 a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~ 285 (529)
T 1jdh_A 206 TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTC 285 (529)
T ss_dssp HHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHH
Confidence 777777776532221 122347888888888889999999999999887655443334578999999999999999999
Q ss_pred HHHHHHHhhhhhc--h-hhHhhhHHHHHHHHhcC--CChHHHHHHHHHhHHHHhhhChh------hhHHHHHHHHHHHcC
Q 009975 312 IISKLDQVNQVIG--I-DLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVG------FFDDKLGALCMQWLQ 380 (521)
Q Consensus 312 a~~~l~~~~~~~~--~-~~~~~~~~~~l~~~~~~--~~~~vr~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~ 380 (521)
++.++..++..-. . .......+|.+.+++.+ .++.++..++.++..++...+.. ......+|.+..+++
T Consensus 286 a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~ 365 (529)
T 1jdh_A 286 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH 365 (529)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTS
T ss_pred HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhc
Confidence 9999999866311 1 11224567888877754 34789999999999886543321 122235788889998
Q ss_pred CCc-HHHHHHHHHHHHHHHHHhC--HHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHH----------------------
Q 009975 381 DKV-YSIRDAAANNLKRLAEEFG--PEWAMQHITPQVLEMINNPHYLYRMTILRAISL---------------------- 435 (521)
Q Consensus 381 d~~-~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~---------------------- 435 (521)
+++ +.+|..++.+++.+...-. .......++|.+.+.+.++++.+|..++++++.
T Consensus 366 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~ 445 (529)
T 1jdh_A 366 PPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 445 (529)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHH
Confidence 876 6999999999988874211 112335678888888888877777766555443
Q ss_pred hhcccC--hHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh--chHHHHhhHHHHHHHhcCCCCccHHHHHHHHH
Q 009975 436 LAPVMG--SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV--DQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 511 (521)
Q Consensus 436 l~~~~~--~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~--~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al 511 (521)
++..-. ........++.+..++.|++++||..++.+++.+...- .........++.|.++..+++++||..|.+++
T Consensus 446 L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL 525 (529)
T 1jdh_A 446 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 525 (529)
T ss_dssp HTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred HhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHH
Confidence 332100 01123456789999999999999999999999987431 11122345678899999999999999999999
Q ss_pred HHH
Q 009975 512 QSI 514 (521)
Q Consensus 512 ~~l 514 (521)
..|
T Consensus 526 ~~l 528 (529)
T 1jdh_A 526 FRM 528 (529)
T ss_dssp HHH
T ss_pred Hhc
Confidence 876
No 13
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.94 E-value=4.2e-24 Score=210.54 Aligned_cols=373 Identities=15% Similarity=0.105 Sum_probs=236.5
Q ss_pred hhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcC-CCCcchhhhhhhhhhhc-------------
Q 009975 22 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG-EWFTARVSACGLFHIAY------------- 87 (521)
Q Consensus 22 ~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~-~~~~~r~~~~~~~~~~~------------- 87 (521)
..+|..+. ++|..+|+.|...|..+...- ...+...++..+. ++ .+..+|..+..++....
T Consensus 4 ~~~L~~~~-s~d~~~r~~Ae~~L~~~~~~~-~~~~~~~L~~il~---~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 4 ITILEKTV-SPDRLELEAAQKFLERAAVEN-LPTFLVELSRVLA---NPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHHHHHTT-CSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---CTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHH---cCCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 34555544 578899999999998866531 1222233333322 22 35678888887776653
Q ss_pred --CCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCC--ChhHHHHHHHHHHHH
Q 009975 88 --PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD--QDSVRLLAVEGCAAL 163 (521)
Q Consensus 88 --~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~--~~~vr~~a~~~l~~l 163 (521)
..++++.+..+...+...+.++++.+ ..++.+++.++....+...++.++|.+...++++ ++.+|..++.+++.+
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l 157 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 45677778888888888888888889 9999999999988655557899999999999888 889999999999999
Q ss_pred hhhcChh---hhhhhhHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHhCC----CccccchHHHHHHhcCCChHHHHHHH
Q 009975 164 GKLLEPQ---DCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLRDNEAEVRIAA 234 (521)
Q Consensus 164 ~~~~~~~---~~~~~l~~~l~~~~~d~--~~~vR~~~~~~l~~i~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a 234 (521)
++...++ ...+.+++.+...++|+ ++.||..++++++.+...++. ......+++.+.+.+.|+++.+|..+
T Consensus 158 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~ 237 (462)
T 1ibr_B 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAA 237 (462)
T ss_dssp HHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9876432 23456888888888887 799999999999886533221 11123367777788888889999999
Q ss_pred HHhHHHHHhhhCHH--HHHH-hhhHHHHHhccCCcHHHHHHHHHHHHccccccC--------------------h---HH
Q 009975 235 AGKVTKFCRILNPE--LAIQ-HILPCVKELSSDSSQHVRSALASVIMGMAPLLG--------------------K---DA 288 (521)
Q Consensus 235 ~~~l~~l~~~~~~~--~~~~-~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~--------------------~---~~ 288 (521)
+.+|..++...+.. .+.. .+++.+...+.|.++.+|..+++.+..++.... . ..
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (462)
T 1ibr_B 238 LQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKG 317 (462)
T ss_dssp HHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHH
Confidence 99999988866432 2334 667777777788889999988888777754310 0 00
Q ss_pred HHHhHHHHHHHhhcC-------CChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhh
Q 009975 289 TIEQLLPIFLSLLKD-------EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 361 (521)
Q Consensus 289 ~~~~l~~~l~~~l~d-------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 361 (521)
....++|.+...+.+ +++.+|..|..+++.++..+|. ...+.++|.+.+.+++++|++|.+++.+++.++..
T Consensus 318 ~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 318 ALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (462)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred HhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 123444544444432 1234444444444444444442 22234444444444444444554444444444443
Q ss_pred hChh---hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Q 009975 362 LGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 401 (521)
Q Consensus 362 ~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 401 (521)
.+.+ .+.+.++|.+...++|+++.||.+|+.+++.++..+
T Consensus 397 ~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 397 PEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp SCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 3211 112334444444444444444444444444444443
No 14
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.94 E-value=1.6e-23 Score=211.14 Aligned_cols=470 Identities=12% Similarity=0.115 Sum_probs=340.8
Q ss_pred hhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHH
Q 009975 21 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRS 100 (521)
Q Consensus 21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~ 100 (521)
+++.+.+++++++..+|+.+.-.+..+++.- ++. ...+++.+.+-.++++..+|..|+..++.+. .++....+.+
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~-~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~~~~~l~~ 124 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDM-AIMAVNSFVKDCEDPNPLIRALAVRTMGCIR---VDKITEYLCE 124 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHH-HHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SGGGHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-chH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hHHHHHHHHH
Confidence 3444556788899999999888888877642 222 2345566666667778888988877776654 5556788899
Q ss_pred HHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh---hhhhhhH
Q 009975 101 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHIL 177 (521)
Q Consensus 101 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~ 177 (521)
.+.+++.|+++.||+.|+.++..+....++......+++.+.+++.|+++.|+..|+.++..++..-++. ......+
T Consensus 125 ~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~ 204 (591)
T 2vgl_B 125 PLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNI 204 (591)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHH
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHH
Confidence 9999999999999999999999999854432223468899999999999999999999999998764321 1112234
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh--CHH---HHH
Q 009975 178 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL--NPE---LAI 251 (521)
Q Consensus 178 ~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~---~~~ 251 (521)
+.+...+.+.++-.+..+.+.++.+. +.+ .....+++.+..++++.++.|+..|+.++..+...+ +++ ...
T Consensus 205 ~~Ll~~l~~~~~~~q~~il~~l~~l~---~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~ 281 (591)
T 2vgl_B 205 NKLLTALNECTEWGQIFILDCLSNYN---PKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL 281 (591)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHTSC---CCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH
T ss_pred HHHHHcCCCCCchHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH
Confidence 44444445566667777776665433 111 112468888888999999999999999999887543 221 223
Q ss_pred HhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhh
Q 009975 252 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 331 (521)
Q Consensus 252 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 331 (521)
..+.+.+..+. ++++.+|..++.+++.+....+... ...+- .+....+|+ ..||..++..+..++..-+ . +.
T Consensus 282 ~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~-~~~~~-~~~~~~~d~-~~Ir~~al~~L~~l~~~~n---v-~~ 353 (591)
T 2vgl_B 282 KKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEIL-KQEIK-VFFVKYNDP-IYVKLEKLDIMIRLASQAN---I-AQ 353 (591)
T ss_dssp HHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTT-TTCTT-TTSCCTTSC-HHHHHHHHHHHHHTCCSST---H-HH
T ss_pred HHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHH-HHHHH-hheeccCCh-HHHHHHHHHHHHHHCChhh---H-HH
Confidence 45666666655 4788999999999999876443211 11111 122223444 9999999999988775422 2 56
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhH
Q 009975 332 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT 411 (521)
Q Consensus 332 ~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 411 (521)
+++.+.+++++.++.+|..++.+++.++..++.. .+..++.+..++++....++..++.++..+...... ..+.++
T Consensus 354 iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~--~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~--~~~~~v 429 (591)
T 2vgl_B 354 VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS--AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN--KYESII 429 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS--SCCTTH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH--HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc--hHHHHH
Confidence 7888888999999999999999999999876533 467889999999999999999999999888876543 135677
Q ss_pred HHHHhhhc-CcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHH
Q 009975 412 PQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRP 490 (521)
Q Consensus 412 ~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~ 490 (521)
+.+.+.+. ...+.+|.++++++|..+..... .+.++..+.+.+.+.++.||..++.++.++....+.. ..+.+..
T Consensus 430 ~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-~~~~i~~ 505 (591)
T 2vgl_B 430 ATLCENLDSLDEPDARAAMIWIVGEYAERIDN---ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-TQELVQQ 505 (591)
T ss_dssp HHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-THHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHcccccccC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-HHHHHHH
Confidence 88888776 45688999999999999886653 2466777777788889999999999999998765432 2244555
Q ss_pred HHHHhcCC-CCccHHHHHHHHHHHH
Q 009975 491 CLVELTED-PDVDVRFFATQAIQSI 514 (521)
Q Consensus 491 ~l~~l~~D-~~~~vr~~a~~al~~l 514 (521)
.+..+..| .|.+||..|...+.-+
T Consensus 506 ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 506 VLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred HHHHhhhcCCChHHHHHHHHHHHHH
Confidence 56665566 7889999998876544
No 15
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.92 E-value=1.7e-22 Score=209.55 Aligned_cols=489 Identities=14% Similarity=0.069 Sum_probs=341.5
Q ss_pred HHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChH--H--HHHHH
Q 009975 24 PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--L--KTELR 99 (521)
Q Consensus 24 ~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~--~--~~~l~ 99 (521)
.+.+.+.+++..+|..+.+.+..... ..+....+|.+..++.+++..+|..++..+..+....+.. . ...++
T Consensus 119 ~lv~~L~~~~~~~r~~a~~~l~~~~~----~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i 194 (780)
T 2z6g_A 119 TNVQRLAEPSQMLKHAVVNLINYQDD----AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 194 (780)
T ss_dssp -------CCSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHhhhH----HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChH
Confidence 34444456677888888887765422 2334567777777777777788988888887777543211 0 13466
Q ss_pred HHHHHhcC-CCChHHHHHHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh--h-hh
Q 009975 100 SIYTQLCQ-DDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--D-CV 173 (521)
Q Consensus 100 ~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~-~~ 173 (521)
+.+.+++. ++++.+|..|+.+|..++..-.. .......+|.+..++.++++.+|..|+.+|..++...... . ..
T Consensus 195 ~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~ 274 (780)
T 2z6g_A 195 SAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRL 274 (780)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence 66666554 45899999999999998754221 1233467889999999999999999999999998764321 1 23
Q ss_pred hhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHh---CCCccccchHHHHHHhcCCChH-HHHHHHHHhHHHHHhhhCHH-
Q 009975 174 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRMDLVPAYVRLLRDNEA-EVRIAAAGKVTKFCRILNPE- 248 (521)
Q Consensus 174 ~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~---~~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~- 248 (521)
...+|.+..++.++++.++..++.++..++... .........++.+.+++++.+. .++..+..++..++..-...
T Consensus 275 ~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~ 354 (780)
T 2z6g_A 275 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 354 (780)
T ss_dssp TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHH
T ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHH
Confidence 568899999999999999999999888666310 0011224568888888887654 45567777787777532221
Q ss_pred -HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch--
Q 009975 249 -LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-- 325 (521)
Q Consensus 249 -~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-- 325 (521)
......++.+..++.+.+..++..++.++..++...........++|.+..++++.++++|..|+.+|..+...-..
T Consensus 355 ~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~ 434 (780)
T 2z6g_A 355 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 434 (780)
T ss_dssp HHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 22334678899999999999999999999998765544333457899999999999999999999999998763211
Q ss_pred -hhHhhhHHHHHHHHhcC-CCh-HHHHHHHHHhHHHHhhhChh------hhHHHHHHHHHHHcCCCc-HHHHHHHHHHHH
Q 009975 326 -DLLSQSLLPAIVELAED-RHW-RVRLAIIEYIPLLASQLGVG------FFDDKLGALCMQWLQDKV-YSIRDAAANNLK 395 (521)
Q Consensus 326 -~~~~~~~~~~l~~~~~~-~~~-~vr~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~ 395 (521)
.......++.+.+++.+ .++ .+|..++.+|+.++...+.. ......+|.+..++.+++ +.+|..++.+|+
T Consensus 435 ~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~ 514 (780)
T 2z6g_A 435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 514 (780)
T ss_dssp HHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 11224567888887765 343 89999999999886543321 112345788899998876 499999999999
Q ss_pred HHHHHhC--HHHHHhhhHHHHHhhhcCcch----------------------HHHHHHHHHHHHhhcccCh--HHHhhcH
Q 009975 396 RLAEEFG--PEWAMQHITPQVLEMINNPHY----------------------LYRMTILRAISLLAPVMGS--EITCSRL 449 (521)
Q Consensus 396 ~l~~~~~--~~~~~~~l~~~l~~~l~~~~~----------------------~~r~~a~~~l~~l~~~~~~--~~~~~~i 449 (521)
.+...-. .......++|.|.+++.+.++ .++..++.+++.++..-.. .......
T Consensus 515 nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~ 594 (780)
T 2z6g_A 515 NLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNT 594 (780)
T ss_dssp HHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred HHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCc
Confidence 9974211 111234577888777765443 3566777777777631111 1123567
Q ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHhhhch-H-HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975 450 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-S-MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 450 l~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~-~-~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~ 516 (521)
+|.+..++.++++.||..++.+|..+...-.. . ......++.|.+++.+++.+||..|.+++..+.+
T Consensus 595 i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 595 IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 89999999999999999999999998743111 1 1223467888999999999999999999998875
No 16
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.92 E-value=6e-22 Score=202.45 Aligned_cols=474 Identities=15% Similarity=0.092 Sum_probs=324.9
Q ss_pred cccCCCcchhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhc
Q 009975 8 FIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAY 87 (521)
Q Consensus 8 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~ 87 (521)
|.+|.++..+....++.|..+++++++.+|..|+.+|..++..-..... + .
T Consensus 2 l~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~---i--------------------------~ 52 (644)
T 2z6h_A 2 LINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA---I--------------------------M 52 (644)
T ss_dssp ----------CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHH---H--------------------------T
T ss_pred cccccchhhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHH---H--------------------------H
Confidence 5677777777667889999999999999999999999999886432110 0 0
Q ss_pred CCCChHHHHHHHHHHHHhc-CCCChHHHHHHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 009975 88 PSAPDILKTELRSIYTQLC-QDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG 164 (521)
Q Consensus 88 ~~~~~~~~~~l~~~l~~l~-~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~ 164 (521)
. ....++.+.+.+ .++++.+|..++.+|..++..... .......+|.+..+++++++.++..|+.+|..++
T Consensus 53 -~-----~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~ 126 (644)
T 2z6h_A 53 -R-----SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 126 (644)
T ss_dssp -T-----CHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred -h-----ccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 0 012233333333 334677888888888776643211 1123356788888888888899999999999988
Q ss_pred hhcChh---hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCCh-HHHHHHHHHh
Q 009975 165 KLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNE-AEVRIAAAGK 237 (521)
Q Consensus 165 ~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~---~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~ 237 (521)
..-... ......+|.+..++.++++.++..++.++..++...+ ........++.+.+++++.+ ..++..+..+
T Consensus 127 ~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~ 206 (644)
T 2z6h_A 127 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV 206 (644)
T ss_dssp HHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred hCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHH
Confidence 764321 1235578889999988888898888888887774110 01123456888888887654 5677888888
Q ss_pred HHHHHhhhCHH-H-HHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHH
Q 009975 238 VTKFCRILNPE-L-AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 315 (521)
Q Consensus 238 l~~l~~~~~~~-~-~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 315 (521)
|..++..-... . .....++.+..++.+.+..++..++.++..++...........++|.+..++.+.++++|..++.+
T Consensus 207 L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~a 286 (644)
T 2z6h_A 207 LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGI 286 (644)
T ss_dssp HHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHH
Confidence 88877533221 1 223468888889999999999999999999986544433345789999999999999999999999
Q ss_pred HHHhhhhhc---hhhHhhhHHHHHHHHhcCC--ChHHHHHHHHHhHHHHhhhChh------hhHHHHHHHHHHHcCCCc-
Q 009975 316 LDQVNQVIG---IDLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVG------FFDDKLGALCMQWLQDKV- 383 (521)
Q Consensus 316 l~~~~~~~~---~~~~~~~~~~~l~~~~~~~--~~~vr~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~- 383 (521)
|..+...-. ........++.+.+++.+. .+.+|..++.+++.++...+.. ......+|.+..++++++
T Consensus 287 L~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~ 366 (644)
T 2z6h_A 287 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH 366 (644)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCC
T ss_pred HHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCc
Confidence 999876321 1112245688888877653 3799999999999987543321 122346888999998875
Q ss_pred HHHHHHHHHHHHHHHHHhC--HHHHHhhhHHHHHhhhcCcch----------------------HHHHHHHHHHHHhhcc
Q 009975 384 YSIRDAAANNLKRLAEEFG--PEWAMQHITPQVLEMINNPHY----------------------LYRMTILRAISLLAPV 439 (521)
Q Consensus 384 ~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~~~~~----------------------~~r~~a~~~l~~l~~~ 439 (521)
+.+|..++.+++.+...-. .......++|.|.+.+.+.++ .++..++.++..++..
T Consensus 367 ~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~ 446 (644)
T 2z6h_A 367 WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD 446 (644)
T ss_dssp HHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC
Confidence 7999999999998864211 112345677888777766443 4555666777766642
Q ss_pred cChH--HHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 009975 440 MGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 515 (521)
Q Consensus 440 ~~~~--~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~ 515 (521)
-... ......+|.+..++.++++.||..++.+|..+...-... ......++.|.++..+++++||..|.+++..+.
T Consensus 447 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~ 526 (644)
T 2z6h_A 447 VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 526 (644)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 2111 123467899999999999999999999999987531111 112345788899999999999999999999886
Q ss_pred H
Q 009975 516 H 516 (521)
Q Consensus 516 ~ 516 (521)
+
T Consensus 527 ~ 527 (644)
T 2z6h_A 527 E 527 (644)
T ss_dssp T
T ss_pred c
Confidence 5
No 17
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.92 E-value=4.4e-22 Score=201.04 Aligned_cols=481 Identities=14% Similarity=0.134 Sum_probs=356.9
Q ss_pred hhHHHHHHHHHHHHHHhhcChh----HHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHH-----HHHHHHHHH
Q 009975 33 ETCVRDKAVESLCRIGSQMRES----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDIL-----KTELRSIYT 103 (521)
Q Consensus 33 ~~~vR~~a~~~l~~i~~~~~~~----~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-----~~~l~~~l~ 103 (521)
.++.|..+.-++..+.+.+..+ ...+.+-.++...........+..+...+..+++..++.. ....++.+.
T Consensus 217 ~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li 296 (810)
T 3now_A 217 TGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMIL 296 (810)
T ss_dssp CTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHH
Confidence 4578999999999999998853 3444555666666655555556777777778887665541 234678888
Q ss_pred HhcCCCChHHHHHHHHhHHHHHHhhCc-hh-hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh--------hhhh
Q 009975 104 QLCQDDMPMVRRSAASNLGKFAATVEP-AH-LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--------QDCV 173 (521)
Q Consensus 104 ~l~~~~~~~vr~~a~~~l~~l~~~~~~-~~-~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--------~~~~ 173 (521)
.+++++++.++..|..+++..+..-.. +. ....+ |.+..++.++++.+|..|...|..++..... +...
T Consensus 297 ~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i 375 (810)
T 3now_A 297 AMATTDDELQQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAA 375 (810)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccH
Confidence 999999999999999999997654221 12 23344 9999999988889999999999999753221 1223
Q ss_pred hhhHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHhC--CCcc-ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC--
Q 009975 174 AHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVG--PEPT-RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-- 246 (521)
Q Consensus 174 ~~l~~~l~~~~~d~--~~~vR~~~~~~l~~i~~~~~--~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-- 246 (521)
..+.+.+.+++.++ ++++|..++++|..++.... .... ...++|.++++++.++..++..|..+|+.+....+
T Consensus 376 ~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q 455 (810)
T 3now_A 376 LKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQ 455 (810)
T ss_dssp HHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhh
Confidence 45788888887776 88999999999998863211 1111 24689999999998889999999999999987431
Q ss_pred ---------------------------------HHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh--HHHHH
Q 009975 247 ---------------------------------PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DATIE 291 (521)
Q Consensus 247 ---------------------------------~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~--~~~~~ 291 (521)
...+..-.+|.+.+++.++++.+|..++++++.++..-.. .....
T Consensus 456 ~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~ 535 (810)
T 3now_A 456 EMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQE 535 (810)
T ss_dssp CCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHT
T ss_pred hhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 0011223689999999999999999999999999843211 11234
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhH-----hhhHHHHHHHHhcCC-ChHHHHHHHHHhHHHHhhhCh-
Q 009975 292 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL-----SQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGV- 364 (521)
Q Consensus 292 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~-----~~~~~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~- 364 (521)
..+|.++.++.+.++.+|..|+.+|..++....++.. ....+|.|.+++.+. +...+..++.+|..++..-..
T Consensus 536 Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~ 615 (810)
T 3now_A 536 GGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESV 615 (810)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHH
Confidence 5789999999999999999999999998765443321 134788888888654 334456788888888764211
Q ss_pred --hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHH---HH--hhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 009975 365 --GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AM--QHITPQVLEMINNPHYLYRMTILRAISLLA 437 (521)
Q Consensus 365 --~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~--~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~ 437 (521)
.......+|.+..++.+.+..||.+|+.+++.++. +.+. +. ...++.|..++.+++..+|..|+++++.+.
T Consensus 616 ~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt 693 (810)
T 3now_A 616 RQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIIT 693 (810)
T ss_dssp HHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC--ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 12233468888999999999999999999999874 2221 12 357889999999999999999999999998
Q ss_pred cccC---hHHHh-hcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc---hHHHHhhHHHHHHHhcCCC---CccHHHHH
Q 009975 438 PVMG---SEITC-SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD---QSMVEKTIRPCLVELTEDP---DVDVRFFA 507 (521)
Q Consensus 438 ~~~~---~~~~~-~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~---~~~~~~~~~~~l~~l~~D~---~~~vr~~a 507 (521)
.... ...+. ...+|.+..++.+++..+|..|++++..+...-+ ......-.+|.|.+++.++ +.+++..|
T Consensus 694 ~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~A 773 (810)
T 3now_A 694 SVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVA 773 (810)
T ss_dssp HHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHH
Confidence 7321 12234 5789999999999999999999999999987422 1223366789999987654 78999999
Q ss_pred HHHHHHHHH
Q 009975 508 TQAIQSIDH 516 (521)
Q Consensus 508 ~~al~~l~~ 516 (521)
.++++.+.+
T Consensus 774 l~aL~~ll~ 782 (810)
T 3now_A 774 TQCLAAAER 782 (810)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998865
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.92 E-value=1.7e-22 Score=198.29 Aligned_cols=378 Identities=13% Similarity=0.076 Sum_probs=279.9
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhhhc-Ch--h-hhhh-hhHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHhC---C
Q 009975 138 MSIFEDLTQDDQDSVRLLAVEGCAALGKLL-EP--Q-DCVA-HILPVIVNFSQDK-SWRVRYMVANQLYELCEAVG---P 208 (521)
Q Consensus 138 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~-~~--~-~~~~-~l~~~l~~~~~d~-~~~vR~~~~~~l~~i~~~~~---~ 208 (521)
++.+.+.++++++.+|..|+..+..+.... .+ + .... .++|.+..+++++ ++.+|..++.++..++..-. .
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 455555666677777777777777765421 11 1 1223 5788888877777 78899999888888764110 1
Q ss_pred CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH--H-HHHHhhhHHHHHhccC-CcHHHHHHHHHHHHcccccc
Q 009975 209 EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E-LAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLL 284 (521)
Q Consensus 209 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~i~~~~ 284 (521)
.......+|.+.++++++++.+|..|+.+|+.++...+. . .....++|.+..++.+ .++.+|..++++++.++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 112256899999999999999999999999998875321 1 1223578888888874 78999999999999988543
Q ss_pred C---hHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch---hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHH
Q 009975 285 G---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 358 (521)
Q Consensus 285 ~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l 358 (521)
+ .......++|.+..++.+.++.+|..++.++..++..... ......++|.+.+++.++++.+|..++.+++.+
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 1 1223467899999999999999999999999998764221 112246789999999999999999999999988
Q ss_pred HhhhChh---hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHH
Q 009975 359 ASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRA 432 (521)
Q Consensus 359 ~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~ 432 (521)
+...+.. .....++|.+..+++++++.+|..|+.+++.++..... ......++|.+...+.++++.+|..++++
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~ 341 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA 341 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 7653321 12235789999999999999999999999998742111 11235788999999999999999999999
Q ss_pred HHHhhcccChHH----HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH---------HHHhhH-----HHHHHH
Q 009975 433 ISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---------MVEKTI-----RPCLVE 494 (521)
Q Consensus 433 l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~---------~~~~~~-----~~~l~~ 494 (521)
++.++.....+. +...++|.++.+++++++.||..++.+|..++...+.. .+...+ ++.+..
T Consensus 342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 421 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF 421 (450)
T ss_dssp HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHH
Confidence 999987544332 23568999999999999999999999999998754321 122333 567788
Q ss_pred hcCCCCccHHHHHHHHHHHHH
Q 009975 495 LTEDPDVDVRFFATQAIQSID 515 (521)
Q Consensus 495 l~~D~~~~vr~~a~~al~~l~ 515 (521)
+..+++.+|+..|..++.++-
T Consensus 422 l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 422 LQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHC
Confidence 888999999999988887653
No 19
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.92 E-value=2.5e-22 Score=202.32 Aligned_cols=471 Identities=15% Similarity=0.122 Sum_probs=332.7
Q ss_pred hhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHH
Q 009975 22 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSI 101 (521)
Q Consensus 22 ~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~ 101 (521)
+.-+.+.+.+++...|..++..+..+ ...|.+ .+.+.+.+.++++++++..|..+...+....+.. ++....+.+.
T Consensus 15 ~~~i~~~L~~~~~~~k~~~~~kli~~-~~~G~d--~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~~~l~~n~ 90 (591)
T 2vgl_B 15 IFELKAELNNEKKEKRKEAVKKVIAA-MTVGKD--VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDMAIMAVNS 90 (591)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHH-HHTTCC--CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHHHHTTHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHH-HHCCCC--hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-chHHHHHHHH
Confidence 34456666677777777766655533 223432 1345566667788888888866655555544322 2323445667
Q ss_pred HHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHH
Q 009975 102 YTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV 181 (521)
Q Consensus 102 l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 181 (521)
+.+-++|+++.+|..|+.+++.+. .+...+.+.|.+.+++.|+++.||..|+.++..+....++......+++.+.
T Consensus 91 l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~ 166 (591)
T 2vgl_B 91 FVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLR 166 (591)
T ss_dssp HGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHH
Confidence 777788999999999988887764 4567788899999999999999999999999999985433212235889999
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHhCCC-c--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHH
Q 009975 182 NFSQDKSWRVRYMVANQLYELCEAVGPE-P--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCV 258 (521)
Q Consensus 182 ~~~~d~~~~vR~~~~~~l~~i~~~~~~~-~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l 258 (521)
.+++|+++.||..++.+++.++..-++. . .....++.+.+.+.+.++..+...++.+..+... .......+++.+
T Consensus 167 ~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~l~~l 244 (591)
T 2vgl_B 167 DLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSICERV 244 (591)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHHHHHH
T ss_pred HHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHHHHHH
Confidence 9999999999999999999887543222 0 1123455566666677777777777766554321 122345678888
Q ss_pred HHhccCCcHHHHHHHHHHHHcccccc--ChHH---HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHH
Q 009975 259 KELSSDSSQHVRSALASVIMGMAPLL--GKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 333 (521)
Q Consensus 259 ~~~~~d~~~~vr~~~~~~l~~i~~~~--~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 333 (521)
..++++.++.|+..++.++..+.... +.+. ....+.+.+..++ ++++++|..++.++..+....+ +.+... +
T Consensus 245 ~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p-~~~~~~-~ 321 (591)
T 2vgl_B 245 TPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRP-EILKQE-I 321 (591)
T ss_dssp TTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCC-STTTTC-T
T ss_pred HHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhCh-HHHHHH-H
Confidence 88899999999999999999987654 2221 2345666666655 4789999999999999987532 222111 1
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHH
Q 009975 334 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 413 (521)
Q Consensus 334 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 413 (521)
..+....+|+ +.+|..+++.+..++..-+ .+.+++.+..++++.++++|..++.+++.++..+... .+..++.
T Consensus 322 ~~~~~~~~d~-~~Ir~~al~~L~~l~~~~n----v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~--~~~~v~~ 394 (591)
T 2vgl_B 322 KVFFVKYNDP-IYVKLEKLDIMIRLASQAN----IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS--AERCVST 394 (591)
T ss_dssp TTTSCCTTSC-HHHHHHHHHHHHHTCCSST----HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHH
T ss_pred HhheeccCCh-HHHHHHHHHHHHHHCChhh----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH--HHHHHHH
Confidence 1121112344 8999999888776653322 3457888889999999999999999999998776432 4567888
Q ss_pred HHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcC-CCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHH
Q 009975 414 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCL 492 (521)
Q Consensus 414 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~-d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l 492 (521)
+.+++.+....++..++.++..+....+.. .+.+++.+...+. +..+.+|..+++++|+.+..... ...++..+
T Consensus 395 Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~l~~l 469 (591)
T 2vgl_B 395 LLDLIQTKVNYVVQEAIVVIRDIFRKYPNK--YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN---ADELLESF 469 (591)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHSCSS--CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHHHHHH
T ss_pred HHHHHcccchHHHHHHHHHHHHHHHHCcch--HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC---HHHHHHHH
Confidence 999999988889998899999988654432 3567778888776 46788999999999998876543 23445555
Q ss_pred HHhcCCCCccHHHHHHHHHHHHHHh
Q 009975 493 VELTEDPDVDVRFFATQAIQSIDHV 517 (521)
Q Consensus 493 ~~l~~D~~~~vr~~a~~al~~l~~~ 517 (521)
.+-..+.++.||..+..|+.++...
T Consensus 470 ~~~~~~~~~~vr~~~l~a~~Kl~~~ 494 (591)
T 2vgl_B 470 LEGFHDESTQVQLTLLTAIVKLFLK 494 (591)
T ss_dssp STTCSSSCHHHHHHHHHHHHHHHTT
T ss_pred HHhhccCCHHHHHHHHHHHHHHHhc
Confidence 5445577889999999998887654
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=4e-22 Score=199.35 Aligned_cols=378 Identities=10% Similarity=0.057 Sum_probs=289.4
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh----hhhhhhhHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHh---CCC
Q 009975 138 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAV---GPE 209 (521)
Q Consensus 138 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~-~~~vR~~~~~~l~~i~~~~---~~~ 209 (521)
++.+...+.++++.+|..|+..+..++..-.. ......++|.+..++.++ ++.+|..++.+++.++... ...
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 168 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 168 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 55566666777788888888888888654321 122345889999999886 8999999999998887421 111
Q ss_pred ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH--H-HHHHhhhHHHHHhccCCcHHHHHHHHHHHHcccccc--
Q 009975 210 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL-- 284 (521)
Q Consensus 210 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~-- 284 (521)
......+|.+.++++++++.+|..|+.+|+.++...+. . .....++|.+..++.+.++.+|..++++++.++...
T Consensus 169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 248 (530)
T 1wa5_B 169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP 248 (530)
T ss_dssp HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCC
Confidence 12246789999999999999999999999999864221 1 223457889999999999999999999999998543
Q ss_pred -ChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch---hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHh
Q 009975 285 -GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 360 (521)
Q Consensus 285 -~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~ 360 (521)
........++|.+..++.++++.+|..++.++..++..... ......++|.+.+++.++++.+|..++.+++.++.
T Consensus 249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence 12334567899999999999999999999999998754221 12224778999999999999999999999998875
Q ss_pred hhCh---hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHH
Q 009975 361 QLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAIS 434 (521)
Q Consensus 361 ~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~ 434 (521)
..+. ......++|.+..++.++++.+|..|+.+++.++..... ......++|.|..++.++++.+|..++++++
T Consensus 329 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~ 408 (530)
T 1wa5_B 329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS 408 (530)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4322 122345889999999999999999999999998752111 1123568899999999999999999999999
Q ss_pred HhhcccCh--HH----HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH---------HH-----HhhHHHHHHH
Q 009975 435 LLAPVMGS--EI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---------MV-----EKTIRPCLVE 494 (521)
Q Consensus 435 ~l~~~~~~--~~----~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~---------~~-----~~~~~~~l~~ 494 (521)
.++...+. +. +...++|.+..++.++++.||..++.+|..++...+.. .+ ....++.|..
T Consensus 409 ~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~ 488 (530)
T 1wa5_B 409 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN 488 (530)
T ss_dssp HHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHG
T ss_pred HHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHH
Confidence 99875433 22 33568999999999999999999999999998754321 11 1335778888
Q ss_pred hcCCCCccHHHHHHHHHHHHH
Q 009975 495 LTEDPDVDVRFFATQAIQSID 515 (521)
Q Consensus 495 l~~D~~~~vr~~a~~al~~l~ 515 (521)
+..+++.+|+..|..++..+-
T Consensus 489 L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 489 CQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp GGGCSCHHHHHHHHHHHHHHS
T ss_pred HHcCCCHHHHHHHHHHHHHHC
Confidence 999999999999998887653
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.92 E-value=2.7e-22 Score=196.89 Aligned_cols=379 Identities=12% Similarity=0.074 Sum_probs=289.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch----hhHH-HHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhcChh--
Q 009975 99 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKT-DIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQ-- 170 (521)
Q Consensus 99 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~----~~~~-~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~-- 170 (521)
++.+.+.++++++.+|..|+..|..++.....+ .... .++|.+.+++.++ ++.+|..|+.++..++..-+..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 566666667889999999999999987532211 1223 6788888888887 8899999999999998743221
Q ss_pred -hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHhhh
Q 009975 171 -DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRIL 245 (521)
Q Consensus 171 -~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~---~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~ 245 (521)
.....++|.+..+++++++.+|..++.+|+.++.... .......+++.+.+++++ +++.+|..++.+|+.++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 1235689999999999999999999999999875211 111224678999999985 78999999999999998653
Q ss_pred CH---HHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh---HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 009975 246 NP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 319 (521)
Q Consensus 246 ~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 319 (521)
++ ......++|.+..++.+.++.+|..+++++..++..... ......++|.+..++.++++.+|..++.+++.+
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 11 122366889999999999999999999999999865422 112346899999999999999999999999999
Q ss_pred hhhhchh---hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hhhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 009975 320 NQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANN 393 (521)
Q Consensus 320 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 393 (521)
+...+.. .....++|.+.+++.++++.+|..++.+++.++..... ......++|.+..+++++++.||..|+.+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~ 341 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA 341 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 7643211 12246899999999999999999999999998753221 12224678999999999999999999999
Q ss_pred HHHHHHHhCHHH----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChH---------HHhhcH-----HHHHHh
Q 009975 394 LKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---------ITCSRL-----LPVVIN 455 (521)
Q Consensus 394 l~~l~~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---------~~~~~i-----l~~l~~ 455 (521)
++.++.....+. ....++|.|..++.++++.+|..++.++..+....... .+...+ ++.+..
T Consensus 342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 421 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF 421 (450)
T ss_dssp HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHH
Confidence 999986543322 23568999999999999999999999999998743221 122223 566777
Q ss_pred hcCCCCchHHHHHHHHHHHHHh
Q 009975 456 ASKDRVPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 456 ~l~d~~~~VR~~a~~~l~~~~~ 477 (521)
+..++++.||..|..++..+..
T Consensus 422 l~~~~~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 422 LQSHENQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHHHCC
Confidence 7778888888888888777653
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.90 E-value=1.4e-21 Score=195.29 Aligned_cols=381 Identities=11% Similarity=0.075 Sum_probs=294.6
Q ss_pred HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch----hhHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhcChh--
Q 009975 98 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQ-- 170 (521)
Q Consensus 98 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~-- 170 (521)
.++.+.+.++++++.+|..|+..|..++.....+ .....++|.+..++.++ ++.+|..|+.+|..++..-+..
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 167 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 167 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 4666777778889999999999999987543221 23356788889988887 8899999999999998753221
Q ss_pred -hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHh---CCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC
Q 009975 171 -DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 246 (521)
Q Consensus 171 -~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 246 (521)
......+|.+..++.++++.+|..++.+|+.++... ........++|.+.+++.+.++.+|..|+.+|..++...+
T Consensus 168 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 247 (530)
T 1wa5_B 168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK 247 (530)
T ss_dssp HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC
Confidence 122457888899888999999999999999987421 1111234688999999999999999999999999986531
Q ss_pred ---HHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh---HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 009975 247 ---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 320 (521)
Q Consensus 247 ---~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 320 (521)
.......++|.+..++.+.++.+|..++.+++.++...+. ......++|.+..++.++++.+|..|+.+++.++
T Consensus 248 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 248 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 327 (530)
T ss_dssp SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHH
Confidence 2234467889999999999999999999999999864322 1122368899999999999999999999999987
Q ss_pred hhhch---hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh---hhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 009975 321 QVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNL 394 (521)
Q Consensus 321 ~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 394 (521)
..-+. ..+...++|.+..++.++++.+|..++.+++.++...... .+...++|.+..++.++++.+|..|+.+|
T Consensus 328 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL 407 (530)
T 1wa5_B 328 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAI 407 (530)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 53221 1233578999999999999999999999999987632211 12245788889999999999999999999
Q ss_pred HHHHHHhCH--H----HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChH---------HH-----hhcHHHHHH
Q 009975 395 KRLAEEFGP--E----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---------IT-----CSRLLPVVI 454 (521)
Q Consensus 395 ~~l~~~~~~--~----~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---------~~-----~~~il~~l~ 454 (521)
+.++...+. + .....++|.|..++.++++.+|..++.++..+....... .+ ....++.+.
T Consensus 408 ~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~ 487 (530)
T 1wa5_B 408 SNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIF 487 (530)
T ss_dssp HHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHH
Confidence 999876443 2 234568999999999999999999999999998643221 11 123577888
Q ss_pred hhcCCCCchHHHHHHHHHHHHHhh
Q 009975 455 NASKDRVPNIKFNVAKVLQSLIPI 478 (521)
Q Consensus 455 ~~l~d~~~~VR~~a~~~l~~~~~~ 478 (521)
.++.++++.|+..|..++..+...
T Consensus 488 ~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 488 NCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp GGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCc
Confidence 899999999999999999887754
No 23
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.90 E-value=5.7e-19 Score=178.44 Aligned_cols=495 Identities=11% Similarity=0.051 Sum_probs=350.0
Q ss_pred hhhhHHhhhhcCc--hhHHHHHHHHHHHHHHhhcChhHHHHh----HHHHHHHhhc---C----C----CCcchhhhhhh
Q 009975 20 VLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMRESDLVDW----YIPLVKRLAA---G----E----WFTARVSACGL 82 (521)
Q Consensus 20 ~l~~~l~~l~~~~--~~~vR~~a~~~l~~i~~~~~~~~~~~~----l~p~i~~~~~---~----~----~~~~r~~~~~~ 82 (521)
.++..|..++.+. ....|+.++..+.+.+..-........ =+.-+.+... + . ....|..+..+
T Consensus 148 ~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~ 227 (810)
T 3now_A 148 TLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVC 227 (810)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHH
T ss_pred HHHHHHHHHhhccccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHH
Confidence 4555555555544 568899999888777754432211111 1111111111 1 0 23567777777
Q ss_pred hhhhcCCCC-----hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc---hhh-HHHHHHHHHHhhcCCChhHH
Q 009975 83 FHIAYPSAP-----DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHL-KTDIMSIFEDLTQDDQDSVR 153 (521)
Q Consensus 83 ~~~~~~~~~-----~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~---~~~-~~~l~~~l~~l~~d~~~~vr 153 (521)
+..+|.... +...+.+-.++.......+..-+-.|+.++..+...... ..+ .+..+|.+..++.+++..++
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q 307 (810)
T 3now_A 228 LARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQ 307 (810)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHH
Confidence 788887665 334444555666666666677777778788777643221 122 45778999999999999999
Q ss_pred HHHHHHHHHHhhhcCh-hhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCC----cc----ccchHHHHHHhcC
Q 009975 154 LLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PT----RMDLVPAYVRLLR 224 (521)
Q Consensus 154 ~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~----~~----~~~l~~~l~~~l~ 224 (521)
..|+.+++..+..-.. +...+.-.|.+..++++++..+|..++.+|.++....+.+ .. ...+++.+.+++.
T Consensus 308 ~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~ 387 (810)
T 3now_A 308 RVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLI 387 (810)
T ss_dssp HHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhc
Confidence 9999999998765211 1112223488999999888999999999888886433211 11 1357888999988
Q ss_pred CC--hHHHHHHHHHhHHHHHhhhCHH-HHH--HhhhHHHHHhccCCcHHHHHHHHHHHHccccccC--------------
Q 009975 225 DN--EAEVRIAAAGKVTKFCRILNPE-LAI--QHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-------------- 285 (521)
Q Consensus 225 d~--~~~vr~~a~~~l~~l~~~~~~~-~~~--~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~-------------- 285 (521)
++ ++++|..|+.+|..+....... .+. ..++|.+.+++...+..++..+++++++++....
T Consensus 388 ~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~ 467 (810)
T 3now_A 388 KPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKF 467 (810)
T ss_dssp CSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTT
T ss_pred CCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHH
Confidence 77 7899999999999987643221 222 3478888888888888899999999999986331
Q ss_pred ---------------------hHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc--hhhHhhhHHHHHHHHhcC
Q 009975 286 ---------------------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAED 342 (521)
Q Consensus 286 ---------------------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~~ 342 (521)
+.......+|.+..++.++++.+|..|++++..++..-. ........+|.+..++.+
T Consensus 468 s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s 547 (810)
T 3now_A 468 AKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALE 547 (810)
T ss_dssp TCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHS
T ss_pred hhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 011123579999999999999999999999999975321 112335779999999999
Q ss_pred CChHHHHHHHHHhHHHHhhhChhhh-----HHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHh---CHHHHHhhhHHH
Q 009975 343 RHWRVRLAIIEYIPLLASQLGVGFF-----DDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEF---GPEWAMQHITPQ 413 (521)
Q Consensus 343 ~~~~vr~~~~~~l~~l~~~~~~~~~-----~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~---~~~~~~~~l~~~ 413 (521)
.+...|..++.+|..++....++.. ....+|.+..++..+ +...+..|+.+|..++..- .........+|.
T Consensus 548 ~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~ 627 (810)
T 3now_A 548 GTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSK 627 (810)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Confidence 9999999999999998866544321 123678888888754 4445567888888887431 112233567899
Q ss_pred HHhhhcCcchHHHHHHHHHHHHhhcccChHH---Hh--hcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch---HHHH
Q 009975 414 VLEMINNPHYLYRMTILRAISLLAPVMGSEI---TC--SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVE 485 (521)
Q Consensus 414 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~---~~--~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~---~~~~ 485 (521)
|..++.+++..+|..|+++++.++. +++. +. ...++.++.+++.++..+|..|+++|+.+...... ..+.
T Consensus 628 Lv~LL~s~~~~Vq~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~ 705 (810)
T 3now_A 628 IEYYLMEDHLYLTRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILA 705 (810)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhC--ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999986 3221 22 35789999999999999999999999999874221 2233
Q ss_pred -hhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975 486 -KTIRPCLVELTEDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 486 -~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~ 516 (521)
...+|.|.+++.+++.++|..|++++..+..
T Consensus 706 ~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 706 IASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp STTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999998864
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.89 E-value=1.3e-20 Score=195.51 Aligned_cols=461 Identities=13% Similarity=0.064 Sum_probs=323.7
Q ss_pred HhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhH-HH--HhHHHHHHHhhc-CCCCcchhhhhhhhhhhcCCCChH-
Q 009975 19 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD-LV--DWYIPLVKRLAA-GEWFTARVSACGLFHIAYPSAPDI- 93 (521)
Q Consensus 19 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~-~~--~~l~p~i~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~- 93 (521)
...+|.|..++.++++.+|..|+.+|..++..-+... +. ...++.+.+.+. +++..+|..++..+..+... ++.
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGL 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhH
Confidence 3467777788888999999999999999998643321 11 245666655554 44667787777777665533 221
Q ss_pred ---HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch---hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhc
Q 009975 94 ---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL 167 (521)
Q Consensus 94 ---~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~ 167 (521)
.....++.+..+++++++.+|..|+.+|..++...... ......++.+..++.+++..++..++.++..++..-
T Consensus 228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 307 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 307 (780)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 22347788999999999999999999999999764321 124567889999999888899999999998877421
Q ss_pred Ch---hhhhhhhHHHHHHhcCCCChH-HHHHHHHHHHHHHHHhC--CCccccchHHHHHHhcCCChHHHHHHHHHhHHHH
Q 009975 168 EP---QDCVAHILPVIVNFSQDKSWR-VRYMVANQLYELCEAVG--PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 241 (521)
Q Consensus 168 ~~---~~~~~~l~~~l~~~~~d~~~~-vR~~~~~~l~~i~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 241 (521)
.. .......++.+..++.+.+.. .+..++.++..++..-. ........++.+..++.+.+..++..++.+|..+
T Consensus 308 ~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387 (780)
T ss_dssp HHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 11 112234567777777765554 45566777777663111 1112345789999999999999999999999998
Q ss_pred HhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChH---HHHHhHHHHHHHhhcCC-C-hHHHHHHHHHH
Q 009975 242 CRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDE-F-PDVRLNIISKL 316 (521)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~---~~~~~l~~~l~~~l~d~-~-~~vr~~a~~~l 316 (521)
+...........++|.+.+++.++++.+|..++.+++.++..-... ......++.+..++.+. + +++|..|+.+|
T Consensus 388 ~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL 467 (780)
T 2z6g_A 388 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467 (780)
T ss_dssp HTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 8755332223457889999999999999999999999997643211 11234688888888763 3 49999999999
Q ss_pred HHhhhhhch------hhHhhhHHHHHHHHhcCCC-hHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCc----
Q 009975 317 DQVNQVIGI------DLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKV---- 383 (521)
Q Consensus 317 ~~~~~~~~~------~~~~~~~~~~l~~~~~~~~-~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~---- 383 (521)
+.+....+. .......+|.+.+++.+.+ +.+|..++.++..++..-... .....++|.+..++.+.+
T Consensus 468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~ 547 (780)
T 2z6g_A 468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQ 547 (780)
T ss_dssp HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHH
Confidence 998753221 1123466889999887765 699999999999987532111 112346777777776644
Q ss_pred ------------------HHHHHHHHHHHHHHHHHhCH--HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh-
Q 009975 384 ------------------YSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS- 442 (521)
Q Consensus 384 ------------------~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~- 442 (521)
.+++..++.+|+.++..-.. .......+|.|..++.+++..+|..++.+++.+...-..
T Consensus 548 ~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~ 627 (780)
T 2z6g_A 548 RRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 627 (780)
T ss_dssp HTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHH
Confidence 34566677777766521100 112356789999999999999999999999998742111
Q ss_pred H-HHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc
Q 009975 443 E-ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 480 (521)
Q Consensus 443 ~-~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~ 480 (521)
. ......++.+..++.++++.||..|+.+|..+...-+
T Consensus 628 ~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 628 EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 1 1123467889999999999999999999999987544
No 25
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.89 E-value=2.9e-20 Score=185.97 Aligned_cols=377 Identities=11% Similarity=0.082 Sum_probs=276.5
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh----hhhhhhhHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHhC---CC
Q 009975 138 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVG---PE 209 (521)
Q Consensus 138 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~-~~vR~~~~~~l~~i~~~~~---~~ 209 (521)
+|.+...+.++++.+|..|+..+..++..-.. ......++|.+..++.+++ +.+|..++.+|+.++..-. ..
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 45555555666777777777777777654321 1223457788888777765 8888888888888774110 01
Q ss_pred ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH--HH-HHHhhhHHHHHhc-cCCcHHHHHHHHHHHHccccccC
Q 009975 210 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--EL-AIQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLG 285 (521)
Q Consensus 210 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~-~~~~~~~~l~~~~-~d~~~~vr~~~~~~l~~i~~~~~ 285 (521)
......+|.+.+++.++++.+|..|+.+|+.++...+. .. .....+|.+..++ .+.++.++..+++++..++...+
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 12245788899999988889999999999988764221 11 1223677788887 67889999999999998876532
Q ss_pred --hHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchh---hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHh
Q 009975 286 --KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 360 (521)
Q Consensus 286 --~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~ 360 (521)
.......++|.+..++.+.+++++..++.++..++...... .....++|.+..++.++++.+|..++.+++.++.
T Consensus 236 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 315 (528)
T 4b8j_A 236 QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT 315 (528)
T ss_dssp CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence 23335678999999999999999999999999987543211 1234678999999999999999999999988876
Q ss_pred hhCh---hhhHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHHH
Q 009975 361 QLGV---GFFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAI 433 (521)
Q Consensus 361 ~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l 433 (521)
.... ..+...++|.+..++.++ ++.+|..|+.+++.++..... ......++|.|..++.++++.+|..++.++
T Consensus 316 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL 395 (528)
T 4b8j_A 316 GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAI 395 (528)
T ss_dssp SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3321 122244688899999998 999999999999999752111 112357889999999989999999999999
Q ss_pred HHhhcccChHH----HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH---------HH-----HhhHHHHHHHh
Q 009975 434 SLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---------MV-----EKTIRPCLVEL 495 (521)
Q Consensus 434 ~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~---------~~-----~~~~~~~l~~l 495 (521)
+.++...+.+. ....+++.+..++.++++.++..++.+|..++...+.. .+ ....++.+..+
T Consensus 396 ~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L 475 (528)
T 4b8j_A 396 SNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENL 475 (528)
T ss_dssp HHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHG
T ss_pred HHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHH
Confidence 99987644332 12468899999999999999999999999998754321 11 13346777888
Q ss_pred cCCCCccHHHHHHHHHHHH
Q 009975 496 TEDPDVDVRFFATQAIQSI 514 (521)
Q Consensus 496 ~~D~~~~vr~~a~~al~~l 514 (521)
.++++.+|+..|...+..+
T Consensus 476 ~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 476 QSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp GGCSSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 8999999999999988765
No 26
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.89 E-value=4.7e-20 Score=184.40 Aligned_cols=381 Identities=11% Similarity=0.081 Sum_probs=293.9
Q ss_pred HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc----hhhHHHHHHHHHHhhcCCC-hhHHHHHHHHHHHHhhhcChh--
Q 009975 98 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQDDQ-DSVRLLAVEGCAALGKLLEPQ-- 170 (521)
Q Consensus 98 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~~~-- 170 (521)
-++.+.+.+.++++.+|..|+..|..++..... ......++|.+.+++.+++ +.+|..|+.+|..++..-+..
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 366667777788999999999999998765431 1234567888888888776 899999999999999752221
Q ss_pred -hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhc-CCChHHHHHHHHHhHHHHHhhh
Q 009975 171 -DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRIL 245 (521)
Q Consensus 171 -~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~---~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~ 245 (521)
......+|.+..++.++++.+|..++.+|+.++.... ........++.+.+++ .+.++.++..++.+|..++...
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 1223588999999999999999999999999985211 1112245788899998 6778999999999999998763
Q ss_pred C--HHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChH---HHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 009975 246 N--PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 320 (521)
Q Consensus 246 ~--~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 320 (521)
+ .......++|.+..++.+.++.++..++.+++.++...+.. .....++|.+..++.++++.++..|+.+++.++
T Consensus 235 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~ 314 (528)
T 4b8j_A 235 PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 314 (528)
T ss_dssp SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 2 22344668899999999999999999999999998654322 123367999999999999999999999999998
Q ss_pred hhhch---hhHhhhHHHHHHHHhcCC-ChHHHHHHHHHhHHHHhhhCh---hhhHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 009975 321 QVIGI---DLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANN 393 (521)
Q Consensus 321 ~~~~~---~~~~~~~~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 393 (521)
..... ..+...++|.+..++.++ ++.+|..++.+++.++..... ..+...++|.+..++.+.++.+|..|+.+
T Consensus 315 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~a 394 (528)
T 4b8j_A 315 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWA 394 (528)
T ss_dssp TSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 63221 122356789999999888 999999999999999863221 11223567899999999999999999999
Q ss_pred HHHHHHHhCHHH----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChH---------HH-----hhcHHHHHHh
Q 009975 394 LKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---------IT-----CSRLLPVVIN 455 (521)
Q Consensus 394 l~~l~~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---------~~-----~~~il~~l~~ 455 (521)
|+.++...+.+. ....+++.|..++.++++.++..++.++..+....... .+ ....++.+..
T Consensus 395 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 474 (528)
T 4b8j_A 395 ISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIEN 474 (528)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHH
Confidence 999987633332 23568999999999999999999999999998643220 11 1334677888
Q ss_pred hcCCCCchHHHHHHHHHHHHHhh
Q 009975 456 ASKDRVPNIKFNVAKVLQSLIPI 478 (521)
Q Consensus 456 ~l~d~~~~VR~~a~~~l~~~~~~ 478 (521)
+..++++.|+..|...+..+...
T Consensus 475 L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 475 LQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp GGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHcCCCHHHHHHHHHHHHHHCCC
Confidence 88999999999999999887654
No 27
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.88 E-value=8.7e-20 Score=184.34 Aligned_cols=468 Identities=9% Similarity=0.002 Sum_probs=316.1
Q ss_pred HhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHHHH
Q 009975 25 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ 104 (521)
Q Consensus 25 l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 104 (521)
+.+++.+++...|+.+--.+..+++.- .++.-..++.+.+-+++++..+|..|+..++.+. .++....+.+.+..
T Consensus 75 vik~~~s~~~~~Krl~Yl~~~~~~~~~--~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~~l~~ 149 (618)
T 1w63_A 75 CLKLIASQKFTDKRIGYLGAMLLLDER--QDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRDLAGEVEK 149 (618)
T ss_dssp HHHHHHSSSHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CHHHHHHHHHHHHH
T ss_pred HHHHHcCCchHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Confidence 334555677777777666666655531 2222345566666666777788888888887776 34556778888888
Q ss_pred hcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh-hhhhhhHHHHHHh
Q 009975 105 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-DCVAHILPVIVNF 183 (521)
Q Consensus 105 l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~ 183 (521)
++.|+++.||+.|+.+++.+....++ ..+.+++.+..++.|.++.|+..|+.++..++..-++- .....++|.+...
T Consensus 150 ~L~~~~~~VRk~A~~al~~l~~~~p~--~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~ 227 (618)
T 1w63_A 150 LLKTSNSYLRKKAALCAVHVIRKVPE--LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRI 227 (618)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHCGG--GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 88888999999999999998875442 33466777788888888899999998888887652210 1122334433332
Q ss_pred cC---------------CCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc------CCChHHHHHHHHHhHHHHH
Q 009975 184 SQ---------------DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL------RDNEAEVRIAAAGKVTKFC 242 (521)
Q Consensus 184 ~~---------------d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~l~~l~ 242 (521)
+. ..++-.+..+++.++.++.. .......+.+.+.+++ ++.+..|...|+.++..+.
T Consensus 228 L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~--~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~ 305 (618)
T 1w63_A 228 LKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN--DDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIK 305 (618)
T ss_dssp HHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT--CHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcC
Confidence 21 24666777777777766531 0011234455555543 2345678888888776643
Q ss_pred hhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhh
Q 009975 243 RILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 322 (521)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 322 (521)
. .........+.+..++.++++.+|..++.+++.++...+. ......+.++.++.|++..||..++..+..++..
T Consensus 306 ~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~--~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~ 380 (618)
T 1w63_A 306 S---ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN--AVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNG 380 (618)
T ss_dssp C---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH--HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS
T ss_pred C---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH--HHHHHHHHHHHHccCCChhHHHHHHHHHHHHccc
Confidence 2 1222334567777778888889999999999998754332 2345567788899999999999999999998764
Q ss_pred hchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC
Q 009975 323 IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 402 (521)
Q Consensus 323 ~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 402 (521)
-.. +.+++.+.+++.+.+..+|..++.+++.++..+++. ..+.++.++.++++....++..+...+..+.....
T Consensus 381 ~nv----~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~--~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p 454 (618)
T 1w63_A 381 NNI----RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS--KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSV 454 (618)
T ss_dssp SST----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSC
T ss_pred ccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc--HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCh
Confidence 221 456777777778888999999999999999887644 35567788888888777777777777777765443
Q ss_pred HHHHHhhhHHHHHhhhcC--cchHHHHHHHHHHHHhhcccChH---------HHhhcHHHHHHhhcC--CCCchHHHHHH
Q 009975 403 PEWAMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSE---------ITCSRLLPVVINASK--DRVPNIKFNVA 469 (521)
Q Consensus 403 ~~~~~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~~~~---------~~~~~il~~l~~~l~--d~~~~VR~~a~ 469 (521)
. .....++.+.+.+.+ .+......+++++|..+..+... .....+.+.+...++ ..++.||..++
T Consensus 455 ~--l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~l 532 (618)
T 1w63_A 455 E--MHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYAL 532 (618)
T ss_dssp S--THHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred h--HHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 1 223455556555543 23344457899999998754220 011234444444443 56889999999
Q ss_pred HHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975 470 KVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 470 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~ 516 (521)
.++.++....+. ..+.+...|..+..|.|.+||..|...+.-+..
T Consensus 533 ta~~Kl~~~~~~--~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 533 TAIMKLSTRFTC--TVNRIKKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHTTCSS--CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcc--hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 999998876542 246677777788899999999999998877653
No 28
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.87 E-value=1e-18 Score=178.49 Aligned_cols=420 Identities=12% Similarity=0.046 Sum_probs=302.9
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchh--h-HHHHHHHHHHhhcC-CChhHHHHHHHHHHHHhhhcChh--
Q 009975 97 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH--L-KTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQ-- 170 (521)
Q Consensus 97 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~--~-~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~-- 170 (521)
..++.+..+++++++.+|..|+..|+.++....... . ....++.+.+.+.+ ++..+|..|+.+|..++..-...
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~ 93 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 93 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH
Confidence 356777778888999999999999999987543211 1 23556666666654 47899999999999887642111
Q ss_pred hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH
Q 009975 171 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 247 (521)
Q Consensus 171 ~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 247 (521)
......+|.+..+++++++.+|..++.+|..++...... ......+|.+.++++++++.++..++.+|..++...+.
T Consensus 94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~ 173 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 173 (644)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcH
Confidence 123347899999999999999999999999998754321 12367899999999999999999999999888752211
Q ss_pred H---HHHHhhhHHHHHhccCC-cHHHHHHHHHHHHccccccCh--HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhh
Q 009975 248 E---LAIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 321 (521)
Q Consensus 248 ~---~~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 321 (521)
. ......++.+..++.+. ...++..++.++..++..-.. .......+|.+..++.+.+..++..++.++..++.
T Consensus 174 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 1 11233567777777654 467788888888888753221 12233578999999999999999999999999986
Q ss_pred hhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hhhHHHHHHHHHHHcCCC--cHHHHHHHHHHHHH
Q 009975 322 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDK--VYSIRDAAANNLKR 396 (521)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~ 396 (521)
..........++|.+.+++.+.++.+|..++.++..++..-.. .......+|.+..++.+. .+.+|..|+.+|+.
T Consensus 254 ~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~n 333 (644)
T 2z6h_A 254 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 333 (644)
T ss_dssp GCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 5433222357899999999999999999999999988764211 122234677888887763 37999999999999
Q ss_pred HHHHhCHH------HHHhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhhcccC--hHHHhhcHHHHHHhhcCCCCc-----
Q 009975 397 LAEEFGPE------WAMQHITPQVLEMINNPH-YLYRMTILRAISLLAPVMG--SEITCSRLLPVVINASKDRVP----- 462 (521)
Q Consensus 397 l~~~~~~~------~~~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~--~~~~~~~il~~l~~~l~d~~~----- 462 (521)
+....+.+ ......+|.|.+++.+++ +.+|..++++++.++..-. .......++|.+..++.+..+
T Consensus 334 L~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~ 413 (644)
T 2z6h_A 334 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 413 (644)
T ss_dssp HTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC
T ss_pred HhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhH
Confidence 96432221 223467899999998875 7999999999999985211 122345678888888776443
Q ss_pred -----------------hHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975 463 -----------------NIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 463 -----------------~VR~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~ 516 (521)
.|+..++.+|..++...... ......+|.|.+++.+.+.+|+..|..++..+..
T Consensus 414 a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 414 TSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp ----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred hhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 45556666666665432221 1234578899999999999999999999887653
No 29
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.86 E-value=5.2e-19 Score=177.25 Aligned_cols=421 Identities=11% Similarity=0.031 Sum_probs=294.4
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch-h-h-HHHHHHHHHHhhc-CCChhHHHHHHHHHHHHhhhcCh-
Q 009975 95 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA-H-L-KTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEP- 169 (521)
Q Consensus 95 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~-~-~-~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~- 169 (521)
....++.+..+++++++.+|..|+..|+.++..-... . . ....++.+.+++. ++++.+|..++.+|..++..-..
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 3456788888888999999999999999998643221 1 1 2245666666654 45788999999999998754211
Q ss_pred -hhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhh
Q 009975 170 -QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 245 (521)
Q Consensus 170 -~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 245 (521)
.......+|.+..+++++++.+|..++.++..++..-+.. ......+|.+.++++++++.++..+..+|..++..-
T Consensus 95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~ 174 (529)
T 1jdh_A 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCC
Confidence 1123357889999999999999999999999998753321 113578999999999999999999999998876521
Q ss_pred CH--HH-HHHhhhHHHHHhccCC-cHHHHHHHHHHHHccccccCh--HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHh
Q 009975 246 NP--EL-AIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 319 (521)
Q Consensus 246 ~~--~~-~~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 319 (521)
+. .. .....++.+..++.+. ....+..+..++..++..-.. .......+|.+..++.+.+++++..++.++..+
T Consensus 175 ~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l 254 (529)
T 1jdh_A 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 11 11 1223456666655543 455667777777777643221 222346789999999999999999999999998
Q ss_pred hhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hhhHHHHHHHHHHHcCC--CcHHHHHHHHHHH
Q 009975 320 NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQD--KVYSIRDAAANNL 394 (521)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l 394 (521)
+...........++|.+.+++.++++.+|..++.++..++..-.. .......+|.+..++.+ .++.+|..++.++
T Consensus 255 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L 334 (529)
T 1jdh_A 255 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334 (529)
T ss_dssp HTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence 865433223357899999999999999999999999988664211 11223357777777765 3479999999999
Q ss_pred HHHHHHhCH------HHHHhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhhcccC--hHHHhhcHHHHHHhhcCCCCchHH
Q 009975 395 KRLAEEFGP------EWAMQHITPQVLEMINNPH-YLYRMTILRAISLLAPVMG--SEITCSRLLPVVINASKDRVPNIK 465 (521)
Q Consensus 395 ~~l~~~~~~------~~~~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~--~~~~~~~il~~l~~~l~d~~~~VR 465 (521)
+.+....+. .......+|.+..++.+++ +.+|..++++++.++..-. .......++|.+..++.++++.+|
T Consensus 335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 414 (529)
T 1jdh_A 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQ 414 (529)
T ss_dssp HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHH
Confidence 998643222 1223457899999998876 7999999999999985211 122345788999999988888888
Q ss_pred HHHHHHHHH----------------------HHhhhch--HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 009975 466 FNVAKVLQS----------------------LIPIVDQ--SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 515 (521)
Q Consensus 466 ~~a~~~l~~----------------------~~~~~~~--~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~ 515 (521)
..++++++. ++..... .......+|.|..++.|++++||..+.+++..+.
T Consensus 415 ~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~ 488 (529)
T 1jdh_A 415 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 488 (529)
T ss_dssp -----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 876665543 2221110 1223456788999999999999999999998865
No 30
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.84 E-value=9.3e-19 Score=176.86 Aligned_cols=436 Identities=12% Similarity=0.066 Sum_probs=305.0
Q ss_pred HhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHH
Q 009975 19 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL 98 (521)
Q Consensus 19 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l 98 (521)
......+.+-++++++.+|-.|+++++.+.. ..+.+.++|.+.+...+.+..+|..|+..+..++...++. ...+
T Consensus 106 ~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~-v~~~ 180 (618)
T 1w63_A 106 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGS----SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL-MEMF 180 (618)
T ss_dssp HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG-GGGG
T ss_pred HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH-HHHH
Confidence 3456667777789999999999999999873 2455788898989888888899999988888888665543 4578
Q ss_pred HHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc-----hhhHHHHHHHHHHhhc-----------CCChhHHHHHHHHHHH
Q 009975 99 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-----AHLKTDIMSIFEDLTQ-----------DDQDSVRLLAVEGCAA 162 (521)
Q Consensus 99 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~l~~-----------d~~~~vr~~a~~~l~~ 162 (521)
++.+..++.|+++.|+..|+.+|..++...+. ....+.+...+.++.. ..++..+...+++++.
T Consensus 181 ~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~ 260 (618)
T 1w63_A 181 LPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRI 260 (618)
T ss_dssp GGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHH
Confidence 88889999999999999999999998754321 0122333334444322 2467778888888888
Q ss_pred HhhhcChhhhhhhhHHHHHHhc------CCCChHHHHHHHHHHHHHHHHhCCCc-cccchHHHHHHhcCCChHHHHHHHH
Q 009975 163 LGKLLEPQDCVAHILPVIVNFS------QDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAAA 235 (521)
Q Consensus 163 l~~~~~~~~~~~~l~~~l~~~~------~d~~~~vR~~~~~~l~~i~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~ 235 (521)
++..-+ ...+.+.+++..++ ++.+..|...+++++..+ +... ......+.+..++.++++++|..|+
T Consensus 261 l~~~~~--~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l----~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL 334 (618)
T 1w63_A 261 LGRNDD--DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI----KSESGLRVLAINILGRFLLNNDKNIRYVAL 334 (618)
T ss_dssp HTTTCH--HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS----CCCHHHHHHHHHHHHHHHTCSSTTTHHHHH
T ss_pred hCCCCH--HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 876421 22334555555443 334567888888877653 2111 1123567788889988999999999
Q ss_pred HhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHH
Q 009975 236 GKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 315 (521)
Q Consensus 236 ~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 315 (521)
.+|..++...+ .......+.+...+.|++..+|..+++.+..++..-. .+.+++.+...+.+.+.++|..++.+
T Consensus 335 ~~L~~i~~~~p--~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n----v~~iv~eL~~~l~~~d~e~r~~~v~~ 408 (618)
T 1w63_A 335 TSLLKTVQTDH--NAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN----IRGMMKELLYFLDSCEPEFKADCASG 408 (618)
T ss_dssp HHHHHHHHHHH--HHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS----THHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHhhCH--HHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccccc----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999987532 2234455677778899999999999999999886433 24466777777778899999999999
Q ss_pred HHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCC--CcHHHHHHHHHH
Q 009975 316 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD--KVYSIRDAAANN 393 (521)
Q Consensus 316 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~ 393 (521)
++.++..+.+.. ...++.+.+++++....++..++..+..+....+. .....++.+...+.+ ....+...++.+
T Consensus 409 I~~la~k~~~~~--~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~--l~~~~v~~L~~~l~~~~~~~~~~~~~~wi 484 (618)
T 1w63_A 409 IFLAAEKYAPSK--RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVE--MHAYTVQRLYKAILGDYSQQPLVQVAAWC 484 (618)
T ss_dssp HHHHHHSSCCCH--HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCS--THHHHHHHHHHHHHHCCSCSHHHHHHHHH
T ss_pred HHHHHHHhCccH--HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChh--HHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 999998765432 55678888877766655666566666666654332 234455555555553 234445578999
Q ss_pred HHHHHHHhCHH---------HHHhhhHHHHHhhhc--CcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCc
Q 009975 394 LKRLAEEFGPE---------WAMQHITPQVLEMIN--NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVP 462 (521)
Q Consensus 394 l~~l~~~~~~~---------~~~~~l~~~l~~~l~--~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~ 462 (521)
+|++...+... .....+++.+..+++ ..+..+|..++.++.++....+.. .+.+...+-....|.+.
T Consensus 485 lGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~--~~~l~~~L~~~~~~~d~ 562 (618)
T 1w63_A 485 IGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT--VNRIKKVVSIYGSSIDV 562 (618)
T ss_dssp HHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC--HHHHHHHHHHHTTCSCH
T ss_pred HhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch--HHHHHHHHHHhcCCCCH
Confidence 99998655210 011234555555554 568899999999999998766532 34455556666788999
Q ss_pred hHHHHHHHHHHHHHh
Q 009975 463 NIKFNVAKVLQSLIP 477 (521)
Q Consensus 463 ~VR~~a~~~l~~~~~ 477 (521)
+||..|...+..+..
T Consensus 563 evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 563 ELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999998877654
No 31
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.81 E-value=4.4e-17 Score=163.95 Aligned_cols=472 Identities=11% Similarity=0.035 Sum_probs=295.7
Q ss_pred HhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHHHH
Q 009975 25 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ 104 (521)
Q Consensus 25 l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 104 (521)
+.+++.+++...|+.+--.+..+++.- + +..-..++.+.+=+++++..+|..|+..++.+. .++....+.+.+.+
T Consensus 79 vvkl~~s~~~~~Krl~YL~l~~~~~~~-~-e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~---~~e~~~~l~~~v~~ 153 (621)
T 2vgl_A 79 AVNLLSSNRYTEKQIGYLFISVLVNSN-S-ELIRLINNAIKNDLASRNPTFMGLALHCIANVG---SREMAEAFAGEIPK 153 (621)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHSCCCC-H-HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC---CHHHHHHHTTHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHccCC-c-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC---CHHHHHHHHHHHHH
Confidence 334556667777776666666655432 1 112233445544445666667777777776664 34456677777777
Q ss_pred hc--CCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh--hhhhhhHHHH
Q 009975 105 LC--QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVI 180 (521)
Q Consensus 105 l~--~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l 180 (521)
++ .|.+|.||+.|+.++..+.+..++....+.+.+.+.+++.|.++.|+..|+.++..++..-+.. ...+.++..+
T Consensus 154 ~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L 233 (621)
T 2vgl_A 154 ILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRL 233 (621)
T ss_dssp HHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 77 7777888888888887777744321111256677777777777778777777777776543211 1122233333
Q ss_pred HHhcCC-------------CChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc---CC-C----------hHHHHHH
Q 009975 181 VNFSQD-------------KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL---RD-N----------EAEVRIA 233 (521)
Q Consensus 181 ~~~~~d-------------~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l---~d-~----------~~~vr~~ 233 (521)
.+++.+ +++-.+..+.+.+..++.. ++......+.+.+.+.+ .+ + ...|...
T Consensus 234 ~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~-~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~e 312 (621)
T 2vgl_A 234 SRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPP-EDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFE 312 (621)
T ss_dssp HHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSC-SSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHH
Confidence 333211 1344555555554433210 00001112222222222 11 1 1255555
Q ss_pred HHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhc-CCChHHHHHH
Q 009975 234 AAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFPDVRLNI 312 (521)
Q Consensus 234 a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a 312 (521)
|+.++..+. +.........+.+..++.++++.+|..++.++..++...+.........+.++.++. |++..||..+
T Consensus 313 a~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~a 389 (621)
T 2vgl_A 313 AISLIIHHD---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRA 389 (621)
T ss_dssp HHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHH
Confidence 665555543 233445567777888888889999999999999998776533345566778888888 9999999999
Q ss_pred HHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHH
Q 009975 313 ISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAAN 392 (521)
Q Consensus 313 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~ 392 (521)
+..+..++.. +.+ +.++..+.+++.+.+...|..++..++.++..++++ ..+.+..++.++.+....+...+..
T Consensus 390 L~lL~~l~~~---~Nv-~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~--~~~~v~~Ll~ll~~~~~~v~~ev~~ 463 (621)
T 2vgl_A 390 VDLLYAMCDR---SNA-QQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD--YTWYVDTILNLIRIAGDYVSEEVWY 463 (621)
T ss_dssp HHHHHHHCCH---HHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS--THHHHHHHHHHHHHHGGGSCSHHHH
T ss_pred HHHHHHHcCh---hhH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHhhcccchHHHHH
Confidence 9999888754 222 667788888888888999999999999998877654 3556677777776655455555555
Q ss_pred HHHHHHHHhCHHHHHhhhHHHHHhhhcCcch--HHHHHHHHHHHHhhcccChHH-H-hhcHHHHHHhhcCCCCchHHHHH
Q 009975 393 NLKRLAEEFGPEWAMQHITPQVLEMINNPHY--LYRMTILRAISLLAPVMGSEI-T-CSRLLPVVINASKDRVPNIKFNV 468 (521)
Q Consensus 393 ~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~--~~r~~a~~~l~~l~~~~~~~~-~-~~~il~~l~~~l~d~~~~VR~~a 468 (521)
.+..++.... ......+..+.+.+.++.. .+-..+++.+|..+..+.... . ...++..+...+.+..+.||..+
T Consensus 464 ~l~~ii~~~~--~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~ 541 (621)
T 2vgl_A 464 RVIQIVINRD--DVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALL 541 (621)
T ss_dssp HHHHHHGGGC--SCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHhCCh--hHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHH
Confidence 5555554322 1233455666677777643 444567799999876443211 1 12456667777778899999999
Q ss_pred HHHHHHHHhhhchHHHHhhHHHHHHHhcC--CCCccHHHHHHHHHHHHH
Q 009975 469 AKVLQSLIPIVDQSMVEKTIRPCLVELTE--DPDVDVRFFATQAIQSID 515 (521)
Q Consensus 469 ~~~l~~~~~~~~~~~~~~~~~~~l~~l~~--D~~~~vr~~a~~al~~l~ 515 (521)
+.++.++....+. ..+.+...+..... |.|.+||..|..-+.-+.
T Consensus 542 Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 542 LSTYIKFVNLFPE--VKATIQDVLRSDSQLKNADVELQQRAVEYLRLST 588 (621)
T ss_dssp HHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHChH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc
Confidence 9999998776432 33556666666666 999999999998776554
No 32
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.81 E-value=3.9e-17 Score=161.59 Aligned_cols=375 Identities=12% Similarity=0.102 Sum_probs=263.7
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhhhcCh----hhhhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhC---CCc
Q 009975 139 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVG---PEP 210 (521)
Q Consensus 139 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~---~~~ 210 (521)
+-+.+.+++++...+..|...+..+.+.-.. .....-++|.+.++++ ++++.++..++.+|+.++..-. ...
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v 139 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 139 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3344455666677777777777666543211 1223346777777775 4557788888888888763111 112
Q ss_pred cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH--H-HHHHhhhHHHHHhccCCc-----HHHHHHHHHHHHcccc
Q 009975 211 TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E-LAIQHILPCVKELSSDSS-----QHVRSALASVIMGMAP 282 (521)
Q Consensus 211 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~~~~~l~~~~~d~~-----~~vr~~~~~~l~~i~~ 282 (521)
.....+|.+.+++++++..||..|+.+|+.++...+. . ......++.+..++.+++ ..+...++.++..++.
T Consensus 140 v~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 219 (510)
T 3ul1_B 140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219 (510)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh
Confidence 2346789999999999999999999999988764321 1 122335677777776543 3456677777777765
Q ss_pred cc---ChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchh---hHhhhHHHHHHHHhcCCChHHHHHHHHHhH
Q 009975 283 LL---GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356 (521)
Q Consensus 283 ~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~ 356 (521)
.. ........++|.+..++.+++++++..++.++..++..-... .....++|.+.+++.++++.++..++.+++
T Consensus 220 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~ 299 (510)
T 3ul1_B 220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 299 (510)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHH
Confidence 33 222234678999999999999999999999999987532211 123467899999999999999999999998
Q ss_pred HHHhhhChh---hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHH
Q 009975 357 LLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTIL 430 (521)
Q Consensus 357 ~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~ 430 (521)
.++..-... ......+|.+..++++++..+|..|+.+++.++..... ......++|.+..++.+.+..+|..|+
T Consensus 300 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa 379 (510)
T 3ul1_B 300 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 379 (510)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHH
Confidence 886532211 12233567778889999999999999999998642211 123456899999999999999999999
Q ss_pred HHHHHhhcccChHH----HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc----hHHH-----HhhHHHHHHHhcC
Q 009975 431 RAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD----QSMV-----EKTIRPCLVELTE 497 (521)
Q Consensus 431 ~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~----~~~~-----~~~~~~~l~~l~~ 497 (521)
++++.++.....+. .....++.+..+++.+++.++..++.+|..+.+... .+.+ ....+..+..|..
T Consensus 380 ~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~ 459 (510)
T 3ul1_B 380 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 459 (510)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGG
T ss_pred HHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHc
Confidence 99999987555443 235678999999999999999999999999876432 1122 1234677888888
Q ss_pred CCCccHHHHHHHHHHH
Q 009975 498 DPDVDVRFFATQAIQS 513 (521)
Q Consensus 498 D~~~~vr~~a~~al~~ 513 (521)
+++.+|+..|.+-+.+
T Consensus 460 ~~n~~i~~~A~~iie~ 475 (510)
T 3ul1_B 460 HENESVYKASLNLIEK 475 (510)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8999998888777654
No 33
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.81 E-value=1.3e-16 Score=158.76 Aligned_cols=375 Identities=11% Similarity=0.102 Sum_probs=264.5
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhhhcCh----hhhhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhC---CCc
Q 009975 139 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVG---PEP 210 (521)
Q Consensus 139 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~---~~~ 210 (521)
+.+.+.+.+++...+..|+..+..+...-.. ......++|.+..++. +.++.++..++.+|..++..-. ...
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~v 158 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 158 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444555666666676676666665433211 1223446777777664 4567788888888887764211 112
Q ss_pred cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCH--H-HHHHhhhHHHHHhccCCc-----HHHHHHHHHHHHcccc
Q 009975 211 TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E-LAIQHILPCVKELSSDSS-----QHVRSALASVIMGMAP 282 (521)
Q Consensus 211 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~~~~~l~~~~~d~~-----~~vr~~~~~~l~~i~~ 282 (521)
.....+|.+.+++.+++..+|..|+.+|+.++..-+. . ......++.+..++.+++ ..+...+++++..++.
T Consensus 159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 238 (529)
T 3tpo_A 159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 238 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence 2356789999999999999999999999988764211 1 122335777777776543 3456677777777765
Q ss_pred ccC---hHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch---hhHhhhHHHHHHHHhcCCChHHHHHHHHHhH
Q 009975 283 LLG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356 (521)
Q Consensus 283 ~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~ 356 (521)
... .......++|.+..++.+++++++..++.++..+...-.. ......++|.+.+++.++++.++..++.+++
T Consensus 239 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~ 318 (529)
T 3tpo_A 239 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 318 (529)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHH
Confidence 332 2233467899999999999999999999999988753221 1123567899999999999999999999998
Q ss_pred HHHhhhCh---hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHH
Q 009975 357 LLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTIL 430 (521)
Q Consensus 357 ~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~ 430 (521)
.++..-.. .......+|.+..++++++..+|..|+.+|+.++..... ......++|.+..++.+++..+|..|+
T Consensus 319 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~ 398 (529)
T 3tpo_A 319 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAA 398 (529)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHH
Confidence 88753221 112234677888999999999999999999998753211 123456899999999999999999999
Q ss_pred HHHHHhhcccChHH----HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc----hHHHH-----hhHHHHHHHhcC
Q 009975 431 RAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD----QSMVE-----KTIRPCLVELTE 497 (521)
Q Consensus 431 ~~l~~l~~~~~~~~----~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~----~~~~~-----~~~~~~l~~l~~ 497 (521)
++++.++.....+. .....++.+..+|..+++.++..++.+|..+..... .+.+. ...+..+..|..
T Consensus 399 ~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~ 478 (529)
T 3tpo_A 399 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 478 (529)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHc
Confidence 99999987544443 235678999999999999999999999999876432 12221 223566777888
Q ss_pred CCCccHHHHHHHHHHH
Q 009975 498 DPDVDVRFFATQAIQS 513 (521)
Q Consensus 498 D~~~~vr~~a~~al~~ 513 (521)
+++.+|+..|..-+.+
T Consensus 479 ~~n~~i~~~A~~iie~ 494 (529)
T 3tpo_A 479 HENESVYKASLNLIEK 494 (529)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8999999888776654
No 34
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.80 E-value=4.6e-18 Score=155.09 Aligned_cols=254 Identities=20% Similarity=0.132 Sum_probs=187.7
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhH
Q 009975 214 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL 293 (521)
Q Consensus 214 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l 293 (521)
.-++.+.+.++|+++.+|..|+.+|+.+.. +..++.+..++.|+++.+|..++.+++.+...- .....+
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~---~~~~~l 91 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK---KCEDNV 91 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT---TTHHHH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc---ccchHH
Confidence 346778888888888888888888887652 235677777888888888988888888875321 113345
Q ss_pred HHHHH-HhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHH
Q 009975 294 LPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 372 (521)
Q Consensus 294 ~~~l~-~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 372 (521)
++.+. .+++|+++.||..++.+|+.+....+. ....++|.+...++|+++.+|..++.+++.+.. +..+
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~--~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~ 161 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATI 161 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc--ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHH
Confidence 66665 356788899999999999887643221 125678888888899999999999888876543 2256
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHH
Q 009975 373 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPV 452 (521)
Q Consensus 373 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~ 452 (521)
|.+..+++|+++.||..++.+++.+.. . ....++.+...++|+++.+|..++.+++.+.. +..+|.
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~--~----~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--------~~~~~~ 227 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININKY--D----NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSV 227 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTC--C----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhcc--C----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--------HhhHHH
Confidence 777888899999999999999887621 1 23567888888899999999999999988862 456778
Q ss_pred HHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcC-CCCccHHHHHHHHHH
Q 009975 453 VINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTE-DPDVDVRFFATQAIQ 512 (521)
Q Consensus 453 l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~-D~~~~vr~~a~~al~ 512 (521)
+...+.|+. ||..++.+|+.+.. +..+|.|.+++. +++++++..+..+++
T Consensus 228 L~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 228 LCDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 888888754 89999999888754 356777777654 467788877777664
No 35
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.80 E-value=8e-17 Score=159.35 Aligned_cols=378 Identities=10% Similarity=0.072 Sum_probs=279.9
Q ss_pred HHHHHhcCCCChHHHHHHHHhHHHHHHhhCch----hhHHHHHHHHHHhhc-CCChhHHHHHHHHHHHHhhhcChh---h
Q 009975 100 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQ---D 171 (521)
Q Consensus 100 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~---~ 171 (521)
+.+.+.+.++++.++..|+..+..+.+.-..+ .+...++|.+.+++. ++++.++..|+.+|.+++..-+.. .
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v 139 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 139 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 44555667788999999999999887543322 244567898988886 456789999999999998653221 1
Q ss_pred hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHh---CCCccccchHHHHHHhcCCCh-----HHHHHHHHHhHHHHHh
Q 009975 172 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRMDLVPAYVRLLRDNE-----AEVRIAAAGKVTKFCR 243 (521)
Q Consensus 172 ~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~---~~~~~~~~l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~~ 243 (521)
...-.+|.+..++.+++..+|..++.+|+.++..- .........++.+..++.+++ ..++..+..++..+..
T Consensus 140 v~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 219 (510)
T 3ul1_B 140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219 (510)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh
Confidence 22347899999999999999999999999997421 111223457888888887654 2455667777777766
Q ss_pred hhC---HHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChH---HHHHhHHHHHHHhhcCCChHHHHHHHHHHH
Q 009975 244 ILN---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLD 317 (521)
Q Consensus 244 ~~~---~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 317 (521)
.-. .......++|.+..++.+.++.++..+++++..++..-... .....++|.+..++.+.+..++..++.+++
T Consensus 220 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~ 299 (510)
T 3ul1_B 220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 299 (510)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHH
Confidence 432 12334568899999999999999999999999998644321 123357899999999999999999999999
Q ss_pred Hhhhhhch---hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hhhHHHHHHHHHHHcCCCcHHHHHHHH
Q 009975 318 QVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAA 391 (521)
Q Consensus 318 ~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~ 391 (521)
.++..-.. ..+....++.+..++.+++..+|..++.+++.++..... ......++|.+..++++.+..+|..|+
T Consensus 300 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa 379 (510)
T 3ul1_B 300 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 379 (510)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHH
Confidence 98653221 112345677888888999999999999999988754222 122345789999999999999999999
Q ss_pred HHHHHHHHHhCHHH----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcc---cChH-HH-----hhcHHHHHHhhcC
Q 009975 392 NNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---MGSE-IT-----CSRLLPVVINASK 458 (521)
Q Consensus 392 ~~l~~l~~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~---~~~~-~~-----~~~il~~l~~~l~ 458 (521)
.+|..++.....+. .....++.|.+++.+++..++..+++++..+... .+.. .+ ....+..+..+..
T Consensus 380 ~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~ 459 (510)
T 3ul1_B 380 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 459 (510)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGG
T ss_pred HHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHc
Confidence 99999886544332 2456799999999999999999999999988753 2222 12 1234667777888
Q ss_pred CCCchHHHHHHHHHHHHHh
Q 009975 459 DRVPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 459 d~~~~VR~~a~~~l~~~~~ 477 (521)
+++..|+..|.+.+.....
T Consensus 460 ~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 460 HENESVYKASLNLIEKYFS 478 (510)
T ss_dssp CSSHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHCC
Confidence 8999999999998877653
No 36
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.80 E-value=2.3e-16 Score=156.97 Aligned_cols=379 Identities=11% Similarity=0.080 Sum_probs=281.9
Q ss_pred HHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc----hhhHHHHHHHHHHhhc-CCChhHHHHHHHHHHHHhhhcChh---
Q 009975 99 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQ--- 170 (521)
Q Consensus 99 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~--- 170 (521)
++.+.+.+.++++..+..++..+..+...-.. ..+...++|.+.+++. ++++.++..|+.+|.+++..-+..
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~ 157 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 157 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 45566667788899999999999887654332 2245567888888885 556889999999999998764322
Q ss_pred hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHh---CCCccccchHHHHHHhcCCCh-----HHHHHHHHHhHHHHH
Q 009975 171 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRMDLVPAYVRLLRDNE-----AEVRIAAAGKVTKFC 242 (521)
Q Consensus 171 ~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~---~~~~~~~~l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~ 242 (521)
......+|.+..++.+++..+|..++.+|+.++..- .........++.+..++.+++ ..+...+..++..++
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 123447899999999999999999999999997421 111223457888888887654 245566777777776
Q ss_pred hhhCH---HHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChH---HHHHhHHHHHHHhhcCCChHHHHHHHHHH
Q 009975 243 RILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKL 316 (521)
Q Consensus 243 ~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 316 (521)
..-.+ ......++|.+..++.+.+..++..+++++..++...... .....++|.+..++.++++.++..++.++
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL 317 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 317 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHH
Confidence 64322 2334668899999999999999999999999887644321 12345789999999999999999999999
Q ss_pred HHhhhhhch---hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hhhHHHHHHHHHHHcCCCcHHHHHHH
Q 009975 317 DQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAA 390 (521)
Q Consensus 317 ~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a 390 (521)
+.++..-.. ..+....++.+..++.+++..+|..++.+++.++..-.. ......++|.+..++.+.+..+|..|
T Consensus 318 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 397 (529)
T 3tpo_A 318 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAA 397 (529)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHH
Confidence 998753221 123356788899999999999999999999998764322 12234578999999999999999999
Q ss_pred HHHHHHHHHHhCHHH----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcc---cCh-HHHh-----hcHHHHHHhhc
Q 009975 391 ANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---MGS-EITC-----SRLLPVVINAS 457 (521)
Q Consensus 391 ~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~---~~~-~~~~-----~~il~~l~~~l 457 (521)
+.+|..++.....+. .....++.|.+++.+++..++..++.++..+... .+. +.+. ...+..+..+.
T Consensus 398 ~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq 477 (529)
T 3tpo_A 398 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ 477 (529)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHH
Confidence 999999986544332 2356799999999999999999999999998752 222 2221 23466777788
Q ss_pred CCCCchHHHHHHHHHHHHHh
Q 009975 458 KDRVPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 458 ~d~~~~VR~~a~~~l~~~~~ 477 (521)
.+++..|+..|.+.+.....
T Consensus 478 ~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 478 RHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp GCSSHHHHHHHHHHHHHHC-
T ss_pred cCCCHHHHHHHHHHHHHHCC
Confidence 89999999999988876643
No 37
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.79 E-value=1.3e-17 Score=152.07 Aligned_cols=253 Identities=15% Similarity=0.068 Sum_probs=192.9
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhh
Q 009975 176 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL 255 (521)
Q Consensus 176 l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 255 (521)
-++.+...++|+++.+|..++..|+.+. .+..++.+.++++|+++.+|..|+.+|+.+...-. ....++
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~---~~~~l~ 92 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK---CEDNVF 92 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT---THHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccC--------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc---cchHHH
Confidence 4567777888899999999999988764 24578888999999999999999999988653211 123355
Q ss_pred HHHH-HhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHH
Q 009975 256 PCVK-ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 334 (521)
Q Consensus 256 ~~l~-~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 334 (521)
+.+. .+.+|+++.||..++.+++.+....+ .....++|.+...++|+++.||..++.+++.+.. ...+|
T Consensus 93 ~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~ 162 (280)
T 1oyz_A 93 NILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIP 162 (280)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHH
Confidence 5555 35678899999999999988753221 1234678888899999999999999999988754 35688
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHH
Q 009975 335 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 414 (521)
Q Consensus 335 ~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l 414 (521)
.+.+.+.|+++.+|..++.+++.+... .+..+|.+...++|+++.||..++.+|+.+. ....+|.+
T Consensus 163 ~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--------~~~~~~~L 228 (280)
T 1oyz_A 163 LLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--------DKRVLSVL 228 (280)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--------CGGGHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhhccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--------CHhhHHHH
Confidence 888888999999999999998776311 2457788888999999999999999998764 24577888
Q ss_pred HhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCC-CCchHHHHHHHHHH
Q 009975 415 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD-RVPNIKFNVAKVLQ 473 (521)
Q Consensus 415 ~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d-~~~~VR~~a~~~l~ 473 (521)
...++|++ +|..++.+++.+.. +..+|.+..++.+ +++.++..+++.+.
T Consensus 229 ~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 229 CDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 88888765 88889999988854 3577888888765 56777777777664
No 38
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.77 E-value=8.9e-15 Score=156.28 Aligned_cols=486 Identities=10% Similarity=0.085 Sum_probs=296.5
Q ss_pred hhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhh----cC------C
Q 009975 20 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIA----YP------S 89 (521)
Q Consensus 20 ~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~----~~------~ 89 (521)
.+...|.... ++|..+| |...|..+-+ . | +....++..+. ..+.+..+|..|...+... +. .
T Consensus 6 ~l~~~L~~~~-spd~~~r--Ae~~L~~~~~-~-p-~~~~~L~~il~--~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~ 77 (960)
T 1wa5_C 6 TVAKFLAESV-IASTAKT--SERNLRQLET-Q-D-GFGLTLLHVIA--STNLPLSTRLAGALFFKNFIKRKWVDENGNHL 77 (960)
T ss_dssp HHHHHHHHTT-SGGGHHH--HHHHHHHHHT-S-T-THHHHHHHHHH--CTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBS
T ss_pred HHHHHHHHhc-CCCHHHH--HHHHHHHhhc-C-C-CHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHhcCCCcccCCC
Confidence 4566666643 5677888 8888876622 2 2 22223333221 1123456787776555432 32 4
Q ss_pred CChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh
Q 009975 90 APDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP 169 (521)
Q Consensus 90 ~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 169 (521)
++++.+..+...+...+.++++.||..++.++..++..-.+ ..|+.++|.+.+.+++++...+..++.++..+.+....
T Consensus 78 l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~ 156 (960)
T 1wa5_C 78 LPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRP 156 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTT
T ss_pred CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 67666777777666665555699999999999999987543 57899999999999888888899999999999886532
Q ss_pred ----hhh-------hhhhH----HHHHH---hcCCCCh---HHH------HHHHHHHHHHHHHhCCCcc---ccchHHHH
Q 009975 170 ----QDC-------VAHIL----PVIVN---FSQDKSW---RVR------YMVANQLYELCEAVGPEPT---RMDLVPAY 219 (521)
Q Consensus 170 ----~~~-------~~~l~----~~l~~---~~~d~~~---~vR------~~~~~~l~~i~~~~~~~~~---~~~l~~~l 219 (521)
+.. ..... .++.. .+.+... .+| ..+++++..+...--++.. .....+.+
T Consensus 157 ~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~ 236 (960)
T 1wa5_C 157 LFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIF 236 (960)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHH
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 111 11122 22222 2444321 233 2244444332210001111 12344555
Q ss_pred HHhcCC-----------C----hHHHHHHHHHhHHHHHhhhCHH--HHHHhhhHHHHHhcc-----CCcHHHHHHHHHHH
Q 009975 220 VRLLRD-----------N----EAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSS-----DSSQHVRSALASVI 277 (521)
Q Consensus 220 ~~~l~d-----------~----~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~-----d~~~~vr~~~~~~l 277 (521)
.+.+.. . .+.+|+.+++++..+.+..+.. .+.+.+++.+.+.+. ..+..++..+++.+
T Consensus 237 ~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl 316 (960)
T 1wa5_C 237 HKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFL 316 (960)
T ss_dssp HHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHH
T ss_pred HHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHH
Confidence 554421 1 1468899999999888765432 223334444444332 45678888888888
Q ss_pred Hcccccc------ChHHHHHhHH-HHHHHhhc-----------------------CCChHHHHHHHHHHHHhhhhhchhh
Q 009975 278 MGMAPLL------GKDATIEQLL-PIFLSLLK-----------------------DEFPDVRLNIISKLDQVNQVIGIDL 327 (521)
Q Consensus 278 ~~i~~~~------~~~~~~~~l~-~~l~~~l~-----------------------d~~~~vr~~a~~~l~~~~~~~~~~~ 327 (521)
..++..- ....+...++ +.+...+. ++....|.+|...+..++...+ +.
T Consensus 317 ~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~ 395 (960)
T 1wa5_C 317 TAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VL 395 (960)
T ss_dssp HHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HH
T ss_pred HHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hh
Confidence 7765421 1112233444 44444331 1123578899999999998888 43
Q ss_pred HhhhHHHHHHHHhc------CCChHHHHHHHHHhHHHHhhh-----Chh------hhHHHHHHHHHHHcCCC---cHHHH
Q 009975 328 LSQSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQL-----GVG------FFDDKLGALCMQWLQDK---VYSIR 387 (521)
Q Consensus 328 ~~~~~~~~l~~~~~------~~~~~vr~~~~~~l~~l~~~~-----~~~------~~~~~l~~~l~~~l~d~---~~~vr 387 (521)
+.+.+++.+.+.+. +.+|+.|.+++.+++.++... |.. .+.+.+...+...++|+ ++.||
T Consensus 396 v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr 475 (960)
T 1wa5_C 396 VTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILR 475 (960)
T ss_dssp HHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceeh
Confidence 44677777766665 688999999999999998642 111 23333344455556777 89999
Q ss_pred HHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccC----------hHH---HhhcHHHHHH
Q 009975 388 DAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG----------SEI---TCSRLLPVVI 454 (521)
Q Consensus 388 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~----------~~~---~~~~il~~l~ 454 (521)
..++.+++.+...+..+ ....+++.+...+.|++..+|..|+.++..++.... .+. +.+.+++.++
T Consensus 476 ~~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~ 554 (960)
T 1wa5_C 476 VDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLI 554 (960)
T ss_dssp HHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHH
Confidence 99999999999877544 467788999998999999999999999999887422 222 3456777777
Q ss_pred hhcCCCC---c--hHHHHHHHHHHHHHhhhchH--HHHhhHHH----HHHHhcC-CCCccHHHHHHHHHHHHHH
Q 009975 455 NASKDRV---P--NIKFNVAKVLQSLIPIVDQS--MVEKTIRP----CLVELTE-DPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 455 ~~l~d~~---~--~VR~~a~~~l~~~~~~~~~~--~~~~~~~~----~l~~l~~-D~~~~vr~~a~~al~~l~~ 516 (521)
.+++... . .....+..+++.++..++.+ .+...+.+ .+....+ ..++..+..+.++++.+..
T Consensus 555 ~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~ 628 (960)
T 1wa5_C 555 ALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILN 628 (960)
T ss_dssp HHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 7776541 1 13357888888887766532 12223333 3333333 3455666666777776654
No 39
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.74 E-value=1.5e-15 Score=152.80 Aligned_cols=442 Identities=11% Similarity=0.065 Sum_probs=291.9
Q ss_pred hhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhh--cCCCCcchhhhhhhhhhhcCCCChH
Q 009975 16 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA--AGEWFTARVSACGLFHIAYPSAPDI 93 (521)
Q Consensus 16 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~--~~~~~~~r~~~~~~~~~~~~~~~~~ 93 (521)
+........+++=++++++.+|-.|+++++.+.. + .+.+.+.|.+.+.+ .+.+..+|..|+..+..++...++.
T Consensus 107 e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~-e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~ 182 (621)
T 2vgl_A 107 ELIRLINNAIKNDLASRNPTFMGLALHCIANVGS---R-EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL 182 (621)
T ss_dssp HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---H-HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC---H-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh
Confidence 4444456677777779999999999999998854 3 45678888888888 7888899988888877777654443
Q ss_pred HHH--HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch--hhHHHHHHHHHHhhcCC-------------ChhHHHHH
Q 009975 94 LKT--ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDD-------------QDSVRLLA 156 (521)
Q Consensus 94 ~~~--~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~-------------~~~vr~~a 156 (521)
.. .+.+.+.+++.|+++.|+.+|+..+..++..-+.. ...+.+...+.+++.+. ++..+...
T Consensus 183 -~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~i 261 (621)
T 2vgl_A 183 -VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKL 261 (621)
T ss_dssp -CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHH
T ss_pred -cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHH
Confidence 33 68889999999999999999999999998754321 13344555555554321 45566666
Q ss_pred HHHHHHHhhhcChhhhhhhhHHHHHHhc---CC-C--------C--hHHHHHHHHHHHHHHHHhCCCccccchHHHHHHh
Q 009975 157 VEGCAALGKLLEPQDCVAHILPVIVNFS---QD-K--------S--WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRL 222 (521)
Q Consensus 157 ~~~l~~l~~~~~~~~~~~~l~~~l~~~~---~d-~--------~--~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~ 222 (521)
++.+..++..- +......+.+.+...+ .+ + + ..|-..+++++..+. +...........+..+
T Consensus 262 l~ll~~~~~~~-d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~ 337 (621)
T 2vgl_A 262 LRLLQCYPPPE-DPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQF 337 (621)
T ss_dssp HHHGGGSSSCS-SHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCC-CHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHH
Confidence 66665554321 1122333333333222 11 1 2 245555555554432 1111123466778888
Q ss_pred cCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhcc-CCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhh
Q 009975 223 LRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL 301 (521)
Q Consensus 223 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~-d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l 301 (521)
+.+.++++|..++.++..+....+.........+.+...+. |++..+|..+++.+..++.. ...+.++..+...+
T Consensus 338 L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~----~Nv~~Iv~eL~~yl 413 (621)
T 2vgl_A 338 LQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR----SNAQQIVAEMLSYL 413 (621)
T ss_dssp SSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHH
T ss_pred hcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh----hhHHHHHHHHHHHH
Confidence 88888999999999999998765422334555666666667 89999999999998888732 23567777788888
Q ss_pred cCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCC
Q 009975 302 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD 381 (521)
Q Consensus 302 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 381 (521)
.+.+.+.|..++.+++.++..+.+.. ...+..+.+++.+....+...++..+..+....+ ....+.+..+...+.|
T Consensus 414 ~~~d~~~~~~~v~~I~~la~k~~~~~--~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~--~~~~~~~~~l~~~l~~ 489 (621)
T 2vgl_A 414 ETADYSIREEIVLKVAILAEKYAVDY--TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRD--DVQGYAAKTVFEALQA 489 (621)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHCSST--HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGC--SCHHHHHHHHHHHHTS
T ss_pred HhcCHHHHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCh--hHHHHHHHHHHHHHcC
Confidence 88899999999999999987765432 4566677776655443444445555554444332 2344556666777777
Q ss_pred Cc--HHHHHHHHHHHHHHHHHhCHHH-H-HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhc
Q 009975 382 KV--YSIRDAAANNLKRLAEEFGPEW-A-MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS 457 (521)
Q Consensus 382 ~~--~~vr~~a~~~l~~l~~~~~~~~-~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l 457 (521)
+. ..+-..++..+|++........ . ...++..+.+.+.+.+..+|..++.++.++....+. ..+.+...+-...
T Consensus 490 ~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~ 567 (621)
T 2vgl_A 490 PACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE--VKATIQDVLRSDS 567 (621)
T ss_dssp SSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHSSHH
T ss_pred ccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHh
Confidence 64 3455566688888765442110 0 113455666666778899999999999998765432 2233444444444
Q ss_pred C--CCCchHHHHHHHHHHHHH
Q 009975 458 K--DRVPNIKFNVAKVLQSLI 476 (521)
Q Consensus 458 ~--d~~~~VR~~a~~~l~~~~ 476 (521)
. |.+++||..|...+..+.
T Consensus 568 ~~~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 568 QLKNADVELQQRAVEYLRLST 588 (621)
T ss_dssp HHSCSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHc
Confidence 4 899999999998887764
No 40
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.74 E-value=5e-14 Score=150.52 Aligned_cols=411 Identities=10% Similarity=0.073 Sum_probs=257.0
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhh-cC------
Q 009975 96 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL-LE------ 168 (521)
Q Consensus 96 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~-~~------ 168 (521)
..+...+.. ..++++.+| |-..|..+-. .+.+...++..+. ..+.+..+|..|.-.+.+.... ..
T Consensus 5 ~~l~~~L~~-~~spd~~~r--Ae~~L~~~~~---~p~~~~~L~~il~--~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~ 76 (960)
T 1wa5_C 5 ETVAKFLAE-SVIASTAKT--SERNLRQLET---QDGFGLTLLHVIA--STNLPLSTRLAGALFFKNFIKRKWVDENGNH 76 (960)
T ss_dssp HHHHHHHHH-TTSGGGHHH--HHHHHHHHHT---STTHHHHHHHHHH--CTTSCHHHHHHHHHHHHHHHHHHSBCSSSCB
T ss_pred HHHHHHHHH-hcCCCHHHH--HHHHHHHhhc---CCCHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHhcCCCcccCC
Confidence 356666666 456677788 7778876622 2234343443332 1223568999999999887654 11
Q ss_pred --hhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC
Q 009975 169 --PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 246 (521)
Q Consensus 169 --~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 246 (521)
++..+..+...+...+.+.+..+|..++.++..++..--+ ..|++++|.+.+.+++++...+.+++.++..+.+...
T Consensus 77 ~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~ 155 (960)
T 1wa5_C 77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWR 155 (960)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2223444555555544445589999999999999986544 3589999999999988888889999999999988553
Q ss_pred H-----HH------HHHhhhHHHHH-------hccCCcH---HHH------HHHHHHHHcccc-ccChH--HHHHhHHHH
Q 009975 247 P-----EL------AIQHILPCVKE-------LSSDSSQ---HVR------SALASVIMGMAP-LLGKD--ATIEQLLPI 296 (521)
Q Consensus 247 ~-----~~------~~~~~~~~l~~-------~~~d~~~---~vr------~~~~~~l~~i~~-~~~~~--~~~~~l~~~ 296 (521)
. +. +.....|.+.+ .+.+.+. .+| ..+++++..+.. .++.. .....+++.
T Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~ 235 (960)
T 1wa5_C 156 PLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGI 235 (960)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHH
T ss_pred HhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 1 11 12222332222 2443321 233 335555544321 12221 113455676
Q ss_pred HHHhhcCC-----------C----hHHHHHHHHHHHHhhhhhchhh--HhhhHHHHHHHHhc-----CCChHHHHHHHHH
Q 009975 297 FLSLLKDE-----------F----PDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAE-----DRHWRVRLAIIEY 354 (521)
Q Consensus 297 l~~~l~d~-----------~----~~vr~~a~~~l~~~~~~~~~~~--~~~~~~~~l~~~~~-----~~~~~vr~~~~~~ 354 (521)
+.+.+... + +.+|+.++.++..+....+... +...+++.+.+.+. .....++..+++.
T Consensus 236 ~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~f 315 (960)
T 1wa5_C 236 FHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSF 315 (960)
T ss_dssp HHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHH
T ss_pred HHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 66665321 1 3578888988888876554321 12334444444332 3456788888888
Q ss_pred hHHHHhhhC------hhhhHHHHH-HHHHHHcC-----------------------CCcHHHHHHHHHHHHHHHHHhCHH
Q 009975 355 IPLLASQLG------VGFFDDKLG-ALCMQWLQ-----------------------DKVYSIRDAAANNLKRLAEEFGPE 404 (521)
Q Consensus 355 l~~l~~~~~------~~~~~~~l~-~~l~~~l~-----------------------d~~~~vr~~a~~~l~~l~~~~~~~ 404 (521)
+..+++.-. ...+...++ +.++..+. +..+..|.+|..++..++..+| +
T Consensus 316 l~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~ 394 (960)
T 1wa5_C 316 LTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-V 394 (960)
T ss_dssp HHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-H
T ss_pred HHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-h
Confidence 877764311 112333444 45544432 1123588999999999998887 4
Q ss_pred HHHhhhHHHHHhhhc------CcchHHHHHHHHHHHHhhcccC-h----H------HHhhcHHHHHHhhcCCC---CchH
Q 009975 405 WAMQHITPQVLEMIN------NPHYLYRMTILRAISLLAPVMG-S----E------ITCSRLLPVVINASKDR---VPNI 464 (521)
Q Consensus 405 ~~~~~l~~~l~~~l~------~~~~~~r~~a~~~l~~l~~~~~-~----~------~~~~~il~~l~~~l~d~---~~~V 464 (521)
.....+++.+.+.+. +++|+.|++|+.+++.++.... . . .+.+.+...++..+.|+ ++.|
T Consensus 395 ~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~v 474 (960)
T 1wa5_C 395 LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIIL 474 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHH
T ss_pred hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCcee
Confidence 445667777766665 6789999999999999986421 1 1 12222233445556677 8999
Q ss_pred HHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 009975 465 KFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 517 (521)
Q Consensus 465 R~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~ 517 (521)
|.+++++++.+.+.+.++ +...++|.+.+.+.|++..||..|+.|+..+.+.
T Consensus 475 r~~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 475 RVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 999999999999987544 4577888888878899999999999999998764
No 41
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.70 E-value=8.6e-16 Score=132.43 Aligned_cols=188 Identities=15% Similarity=0.217 Sum_probs=151.3
Q ss_pred HhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHH
Q 009975 291 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK 370 (521)
Q Consensus 291 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 370 (521)
....+.+++.++|+++.+|..|+..++.+.. ...++.+.+.++|+++.+|..++..++.+.. +.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~~ 76 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER 76 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GG
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence 3567888889999999999999999988654 3567888888889999999999888876532 12
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHH
Q 009975 371 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL 450 (521)
Q Consensus 371 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il 450 (521)
..|.+...+.|+++.||..|+.+++.+. ....++.+...+.|+++.+|..++.+++.+.. +..+
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~ 140 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV 140 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence 4577778889999999999999988753 23477888888899999999999999998853 4567
Q ss_pred HHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 009975 451 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 518 (521)
Q Consensus 451 ~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~ 518 (521)
+.+..++.|+++.||..++.+|+.+.. +...+.|..+++|+++.||..|..+++.+...+
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~ 200 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSLI 200 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhc
Confidence 888899999999999999999988742 456777888888999999999999998876543
No 42
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.70 E-value=8.3e-16 Score=136.54 Aligned_cols=189 Identities=12% Similarity=0.113 Sum_probs=152.5
Q ss_pred HhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc---hhhHhhhHHHHHHHHhc-CCChHHHHHHHHHhHHHHhhhChh-
Q 009975 291 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG- 365 (521)
Q Consensus 291 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~- 365 (521)
..+.+.+...+.|.++..|..++..+..++...+ ...+ ..+++.+...+. |++..+|..++.+++.++..+|..
T Consensus 14 ~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~ 92 (242)
T 2qk2_A 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF 92 (242)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred ccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH
Confidence 3444556667778888888888888877766421 1122 567788888784 889999999999999999888774
Q ss_pred -hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChH-
Q 009975 366 -FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE- 443 (521)
Q Consensus 366 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~- 443 (521)
.+...++|.++..++|++..||.++..++..++...+ .+.++|.+...+++++|++|..++.+++.+....+++
T Consensus 93 ~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 93 SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 3456789999999999999999999999999987665 3568888999999999999999999999987665532
Q ss_pred ---HHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHH
Q 009975 444 ---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV 484 (521)
Q Consensus 444 ---~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~ 484 (521)
.+.+.++|.+..++.|+.+.||.+|..+++.++..+|.+.+
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~ 212 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAV 212 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHH
Confidence 34578999999999999999999999999999999887544
No 43
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.69 E-value=2.3e-13 Score=146.04 Aligned_cols=484 Identities=13% Similarity=0.100 Sum_probs=302.1
Q ss_pred HHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhc-CCCCcchhhhhhhhhhh----cCCCCh
Q 009975 18 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA-GEWFTARVSACGLFHIA----YPSAPD 92 (521)
Q Consensus 18 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~-~~~~~~r~~~~~~~~~~----~~~~~~ 92 (521)
+..+...+..+..++|+..|+.|.+.|..+-+. | ..+++...+.+ +.+..+|..|...+... +..+++
T Consensus 23 ~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~--p-----~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~ 95 (963)
T 2x19_B 23 VENVEKALHQLYYDPNIENKNLAQKWLMQAQVS--P-----QAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPT 95 (963)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS--T-----THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCG
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--H-----HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCH
Confidence 344666677766677889999999999886553 2 22333333333 44567787777665543 344555
Q ss_pred H----HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcC-----CChhHHHHHHHHHHHH
Q 009975 93 I----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD-----DQDSVRLLAVEGCAAL 163 (521)
Q Consensus 93 ~----~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d-----~~~~vr~~a~~~l~~l 163 (521)
+ .++.+++.+.+.. +..+.||...+.++..+++...++ .|+.+++.+...+++ +++..+..++.+|..+
T Consensus 96 ~~~~~ir~~ll~~l~~~~-~~~~~ir~kl~~~la~i~~~~~p~-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l 173 (963)
T 2x19_B 96 DQYESLKAQLFTQITRFA-SGSKIVLTRLCVALASLALSMMPD-AWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVL 173 (963)
T ss_dssp GGHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHTTT-TSTTHHHHHHHHHCC------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCcc-ccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhC
Confidence 5 3445555555432 235899999999999999875533 388888888887765 2556788899999888
Q ss_pred hhhcCh---------------hhhhhhhHHHHHHhcCCCC--hHHHHHHHHHHHHHHHHhCCCc-cccchHHHHHHhcCC
Q 009975 164 GKLLEP---------------QDCVAHILPVIVNFSQDKS--WRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRD 225 (521)
Q Consensus 164 ~~~~~~---------------~~~~~~l~~~l~~~~~d~~--~~vR~~~~~~l~~i~~~~~~~~-~~~~l~~~l~~~l~d 225 (521)
.+.+.. ....+.+++++...+++.+ ..++..+.+++...+. .+... ....+++.+.+.+.+
T Consensus 174 ~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~~ 252 (963)
T 2x19_B 174 PEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQD 252 (963)
T ss_dssp HHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTTS
T ss_pred HHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhCC
Confidence 853311 1123456677777665532 2478888888876655 33322 125678888888854
Q ss_pred ChHHHHHHHHHhHHHHHhhhCH---HHHHHhhhHHHHHh-------ccCCcHHHHHHHHHHHHccccccCh--------H
Q 009975 226 NEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKEL-------SSDSSQHVRSALASVIMGMAPLLGK--------D 287 (521)
Q Consensus 226 ~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~-------~~d~~~~vr~~~~~~l~~i~~~~~~--------~ 287 (521)
+++|..|+.++..+.....+ ......+++.+... ..+.+.......++.+..++..... .
T Consensus 253 --~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ 330 (963)
T 2x19_B 253 --SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHW 330 (963)
T ss_dssp --TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred --chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccch
Confidence 57999999999998875322 12223333333221 2223333444555666555432211 1
Q ss_pred HHHHhHHHHHHHhhcC-----CChHHHHHHHHHHHHhhhhhc----------hhh---HhhhHHHHHHHHhcCC------
Q 009975 288 ATIEQLLPIFLSLLKD-----EFPDVRLNIISKLDQVNQVIG----------IDL---LSQSLLPAIVELAEDR------ 343 (521)
Q Consensus 288 ~~~~~l~~~l~~~l~d-----~~~~vr~~a~~~l~~~~~~~~----------~~~---~~~~~~~~l~~~~~~~------ 343 (521)
.....+++.+..+..+ .++.+...++..+..+++... .+. +...+++.+...+..+
T Consensus 331 ~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~ 410 (963)
T 2x19_B 331 QSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYG 410 (963)
T ss_dssp HHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 1223556666666664 456777777777776655220 001 1123333333322110
Q ss_pred --------Ch-HHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHHHHHhCHH--HHHh
Q 009975 344 --------HW-RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL----QDKVYSIRDAAANNLKRLAEEFGPE--WAMQ 408 (521)
Q Consensus 344 --------~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~ 408 (521)
.+ ..|..+.+.+..++...+.+ ..+.+.+.+...+ .+.+|..|++++.+++.+......+ ....
T Consensus 411 ~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~ 489 (963)
T 2x19_B 411 FWSSDEKEQFRIYRVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVP 489 (963)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHH
Confidence 11 34777888888888777744 3455666666666 6789999999999999998766432 1223
Q ss_pred hhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh-HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--HHH
Q 009975 409 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVE 485 (521)
Q Consensus 409 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~--~~~ 485 (521)
.+++.+.. +.++++.+|.+++++++.+...++. ..+.+.+++.++..+.+ +.||..|+.++..++...+.. .+.
T Consensus 490 ~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~ 566 (963)
T 2x19_B 490 GLIGLIPR-ISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA 566 (963)
T ss_dssp HHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH
T ss_pred HHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34443322 3446788999999999999986543 34678899999999977 789999999999999875543 223
Q ss_pred hhHHHHHHHhcC--CCCccHHHHHHHHHHHHHHh
Q 009975 486 KTIRPCLVELTE--DPDVDVRFFATQAIQSIDHV 517 (521)
Q Consensus 486 ~~~~~~l~~l~~--D~~~~vr~~a~~al~~l~~~ 517 (521)
+.++..+..+.. +-+.+.|..+.+|++.+...
T Consensus 567 ~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 567 ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhc
Confidence 444554555444 34678888888998887643
No 44
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.69 E-value=2.1e-15 Score=131.05 Aligned_cols=187 Identities=19% Similarity=0.196 Sum_probs=119.5
Q ss_pred hhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHh
Q 009975 174 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH 253 (521)
Q Consensus 174 ~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 253 (521)
+..++.+...++|+++.+|..++..++.+. .+..++.+.+++.|+++.||..++.+|+.+.. +.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~ 81 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER 81 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GG
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence 345566666667777777777777776542 13566777777777777777777777766543 23
Q ss_pred hhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHH
Q 009975 254 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 333 (521)
Q Consensus 254 ~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 333 (521)
.++.+..++.|+++.||..++.+++.+.. ...+|.+..+++|+++.||..++.+++.+.. ...+
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~ 145 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV 145 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHH
Confidence 45666666677777777777777776642 2355666667777777777777777776643 3456
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 009975 334 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 400 (521)
Q Consensus 334 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 400 (521)
+.+.++++|+++.+|..++.+++.+.. +...+.+..+++|+++.||..|..+|+.+...
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 666666677777777777776665521 34556666666677777777777776665543
No 45
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.69 E-value=1.4e-15 Score=135.09 Aligned_cols=186 Identities=16% Similarity=0.216 Sum_probs=159.1
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hhhHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHhCHHH
Q 009975 330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEW 405 (521)
Q Consensus 330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~ 405 (521)
..+-+.+.+.+++++|..|..++..+..+.+..+. ..+ ..+++.+...+. |.+..||..|+.+++.++..+|..+
T Consensus 14 ~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~ 92 (242)
T 2qk2_A 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF 92 (242)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred ccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH
Confidence 44555677788999999999999999999887432 223 568889999994 9999999999999999999888653
Q ss_pred --HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH-
Q 009975 406 --AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS- 482 (521)
Q Consensus 406 --~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~- 482 (521)
+...++|.+.+.+.|++..+|.++..++..+....+ .+.++|.+...++++++.||..++..++.+....+++
T Consensus 93 ~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 93 SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 457799999999999999999999999999998665 3568899999999999999999999999987765433
Q ss_pred ---HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 009975 483 ---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 520 (521)
Q Consensus 483 ---~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~~ 520 (521)
.+.+.++|.+..+++|++++||..|..+++.+...+|.
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 34478999999999999999999999999999988764
No 46
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.68 E-value=4.2e-15 Score=129.16 Aligned_cols=188 Identities=21% Similarity=0.203 Sum_probs=131.8
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccch
Q 009975 136 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDL 215 (521)
Q Consensus 136 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l 215 (521)
..++.+..++.++++.+|..|+..|+.+.. ...++.+..++.|+++.+|..++.+++.+. .+..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------~~~~ 82 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------DERA 82 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------CGGG
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------CHHH
Confidence 345556666677777888888777776543 245666777777888888888888777653 2456
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHH
Q 009975 216 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP 295 (521)
Q Consensus 216 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~ 295 (521)
++.+.++++|+++.||..|+.+|+.+.. +..++.+..++.|+++.||..++.+++.+.. ...++
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~ 146 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVE 146 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHH
Confidence 7777788888888888888888877643 2345667777788888888888888877742 34567
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhC
Q 009975 296 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 363 (521)
Q Consensus 296 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~ 363 (521)
.+..+++|+++.||..++.+|+.+.. +..++.+.++++|+++.||..+..+|..+....+
T Consensus 147 ~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 147 PLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 77777888888888888888887754 4567777777778888888888887776665443
No 47
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.68 E-value=3.7e-15 Score=128.40 Aligned_cols=184 Identities=20% Similarity=0.200 Sum_probs=119.2
Q ss_pred hhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHh
Q 009975 174 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH 253 (521)
Q Consensus 174 ~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 253 (521)
....+.+.+.++|+++.+|..++..++.+. ....++.+.+.++|+++.+|..|+.+|+.+.. +.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~~ 76 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER 76 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GG
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence 345566666777777777777777776543 13456677777777777777777777766543 13
Q ss_pred hhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHH
Q 009975 254 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 333 (521)
Q Consensus 254 ~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 333 (521)
.++.+...+.|+++.+|..++.+++.+.. ...++.+..++.|+++.||..++.+++.+.. ...+
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~ 140 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV 140 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence 45666666677777777777777776542 2356666667777777777777777776643 3456
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 009975 334 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 397 (521)
Q Consensus 334 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 397 (521)
+.+.++++|+++.+|..++.+++.+. . +..++.+..+++|+++.||..|..+|+.+
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~~~----~----~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGEIG----G----ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC----S----HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhC----c----hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 66666667777777777777666552 1 23555666666677777777777666654
No 48
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.68 E-value=5e-14 Score=151.16 Aligned_cols=480 Identities=9% Similarity=0.047 Sum_probs=288.1
Q ss_pred hhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhc-CCCCcchhhhhhhhhhh----cCCCChH--
Q 009975 21 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA-GEWFTARVSACGLFHIA----YPSAPDI-- 93 (521)
Q Consensus 21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~-~~~~~~r~~~~~~~~~~----~~~~~~~-- 93 (521)
+...+..+. ++|+..|+.|.+.|..+-+. | +.+.. ...+.. +.+..+|..|...+... +..++++
T Consensus 9 l~~~l~~~~-~~d~~~r~~A~~~L~~~~~~--p-~~w~~----~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~ 80 (971)
T 2x1g_F 9 LEEAVVSFY-RSNSQNQAITHEWLTDAEAS--P-QAWQF----SWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENR 80 (971)
T ss_dssp --CTHHHHH-TSTTTC----CHHHHHTTTS--T-HHHHH----HHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHHcC--H-HHHHH----HHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHH
Confidence 444554533 46778899999888775442 1 22333 333333 44567787777665433 3455555
Q ss_pred --HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCC------ChhHHHHHHHHHHHHhh
Q 009975 94 --LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD------QDSVRLLAVEGCAALGK 165 (521)
Q Consensus 94 --~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~------~~~vr~~a~~~l~~l~~ 165 (521)
.++.+++.+.+..++ .+.||...+.++..+++...+ .|+.+++.+...++++ ++..+..++.+|..+.+
T Consensus 81 ~~ir~~ll~~l~~~~~~-~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~E 157 (971)
T 2x1g_F 81 EELKQKILESIVRFAGG-PKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPE 157 (971)
T ss_dssp HHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHH
Confidence 455566666655433 589999999999999988665 6888888888887664 56778889999998875
Q ss_pred hcCh-----------h---hhhhhhHHHHHHhcCC---C-----ChHHHHHHHHHHHHHHHH--hCCCccccchHHHHHH
Q 009975 166 LLEP-----------Q---DCVAHILPVIVNFSQD---K-----SWRVRYMVANQLYELCEA--VGPEPTRMDLVPAYVR 221 (521)
Q Consensus 166 ~~~~-----------~---~~~~~l~~~l~~~~~d---~-----~~~vR~~~~~~l~~i~~~--~~~~~~~~~l~~~l~~ 221 (521)
.+.. + ...+.+++++...+++ + ++.++..+.+++..+... .+.. ....+++.+..
T Consensus 158 Ei~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~ 236 (971)
T 2x1g_F 158 EAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLE 236 (971)
T ss_dssp HHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHh
Confidence 3210 0 1123455555554432 1 137899999999888774 3333 34567776665
Q ss_pred hc----------------CCChHHHHHHHHHhHHHHHhhhCH---HHHHHhhhHHHHH-------hccCCc---HHHHHH
Q 009975 222 LL----------------RDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKE-------LSSDSS---QHVRSA 272 (521)
Q Consensus 222 ~l----------------~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~-------~~~d~~---~~vr~~ 272 (521)
+ .++++++|..|+.++..+.....+ ......++|.+.. ...+.+ ......
T Consensus 237 -L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 315 (971)
T 2x1g_F 237 -VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVH 315 (971)
T ss_dssp -HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHH
T ss_pred -hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHH
Confidence 3 124678999999999998874321 1222333443332 113333 245555
Q ss_pred HHHHHHcccccc----C---------hHHHHHhHHHHHHHhhc-----CCChHHHHHHHHHHHHhhhhh-c-------h-
Q 009975 273 LASVIMGMAPLL----G---------KDATIEQLLPIFLSLLK-----DEFPDVRLNIISKLDQVNQVI-G-------I- 325 (521)
Q Consensus 273 ~~~~l~~i~~~~----~---------~~~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~~~~~~-~-------~- 325 (521)
+++.+..++... . .......+++.++.+.. ..+++|+..++..+..+++.. + .
T Consensus 316 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~ 395 (971)
T 2x1g_F 316 IYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHK 395 (971)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHH
Confidence 566666555321 1 11123345666666553 347889999999888876522 1 0
Q ss_pred --h---hHhhhHHHHHHHHh---cCC-----C-------hHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCC----
Q 009975 326 --D---LLSQSLLPAIVELA---EDR-----H-------WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD---- 381 (521)
Q Consensus 326 --~---~~~~~~~~~l~~~~---~~~-----~-------~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d---- 381 (521)
+ .+...+++.+...+ ++. + ...|.++...+..++..+| +.+.+.+.+.+...+..
T Consensus 396 ~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~ 474 (971)
T 2x1g_F 396 CWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRH 474 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCC
Confidence 0 11133344443332 111 1 1467888888888888877 34455566666665543
Q ss_pred -CcHHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhh-cCcchHHHHHHHHHHHHhhcccCh-HHHhhcHHHHHHhh
Q 009975 382 -KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMI-NNPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINA 456 (521)
Q Consensus 382 -~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~ 456 (521)
.+|..|++++.+++.+.+...... ....+++.+..+. .|+++.+|.+++++++.+...++. ..+.+.+++.++..
T Consensus 475 ~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~ 554 (971)
T 2x1g_F 475 PTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRG 554 (971)
T ss_dssp TTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 789999999999999977654321 2234555333333 256899999999999999987653 24667888999988
Q ss_pred cCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCC--CCccHHHHHHHHHHHHHHh
Q 009975 457 SKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTED--PDVDVRFFATQAIQSIDHV 517 (521)
Q Consensus 457 l~d~~~~VR~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~D--~~~~vr~~a~~al~~l~~~ 517 (521)
+ | +.|+..|+.++..+++..+.. .+.+.++..+..+++. .+.+.+..+.++++.+...
T Consensus 555 l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 555 L-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp H-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred h-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 8 4 789999999999999876543 2234444444454444 4678899999999888654
No 49
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.67 E-value=5.6e-13 Score=143.70 Aligned_cols=492 Identities=9% Similarity=0.028 Sum_probs=305.2
Q ss_pred chhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhh----cCCC
Q 009975 15 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIA----YPSA 90 (521)
Q Consensus 15 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~----~~~~ 90 (521)
+..+..+...+..+.+ ++...|+.|.+.|..+-+. + +.+..+...+.. +.+..+|..|...+... +..+
T Consensus 12 ~~~~~~l~~~l~~~~~-p~~~~r~~Ae~~L~~~~~~--p-~~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l 84 (1049)
T 3m1i_C 12 DLDIALLDQVVSTFYQ-GSGVQQKQAQEILTKFQDN--P-DAWQKADQILQF---STNPQSKFIALSILDKLITRKWKLL 84 (1049)
T ss_dssp CCCHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHS--T-TGGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGS
T ss_pred cccHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHhC--c-hHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccC
Confidence 4445666777777665 3456899999999877543 2 233444444432 44667787776655443 3456
Q ss_pred ChHHHHHHHHHHHHhcC----CC-----ChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 009975 91 PDILKTELRSIYTQLCQ----DD-----MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCA 161 (521)
Q Consensus 91 ~~~~~~~l~~~l~~l~~----~~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~ 161 (521)
+++.+..+...+..++. ++ ++.||...+.++..+++...+ ..|+.+++.+....+ .++..+..+..+|.
T Consensus 85 ~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~ 162 (1049)
T 3m1i_C 85 PNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLK 162 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHH
Confidence 76655555554444332 22 478999999999999987543 568888888888876 45566777888888
Q ss_pred HHhhhcCh---------------hhh---hhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCCCc-cccchHHHHH-
Q 009975 162 ALGKLLEP---------------QDC---VAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYV- 220 (521)
Q Consensus 162 ~l~~~~~~---------------~~~---~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~~~~-~~~~l~~~l~- 220 (521)
.+.+.+.+ +.. .+.+++.+...++ ..+..++..+.+++..+....+... ..+.+++.+.
T Consensus 163 ~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~ 242 (1049)
T 3m1i_C 163 LLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLST 242 (1049)
T ss_dssp HHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHT
T ss_pred HHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHH
Confidence 87754321 001 1224444444443 3567899999999887765443221 2245677666
Q ss_pred HhcCCChHHHHHHHHHhHHHHHhhh-CHH-----HHH----HhhhHHHHH-h-------------ccCCcHHHHHHHHHH
Q 009975 221 RLLRDNEAEVRIAAAGKVTKFCRIL-NPE-----LAI----QHILPCVKE-L-------------SSDSSQHVRSALASV 276 (521)
Q Consensus 221 ~~l~d~~~~vr~~a~~~l~~l~~~~-~~~-----~~~----~~~~~~l~~-~-------------~~d~~~~vr~~~~~~ 276 (521)
.++. ++.+|.+|+++|..+...- ++. ... ..++..+.. + ..+.++......++.
T Consensus 243 ~~l~--~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~ 320 (1049)
T 3m1i_C 243 KFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMF 320 (1049)
T ss_dssp HHHH--SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHH
T ss_pred HhCC--CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHH
Confidence 3443 5789999999999988652 221 111 112222211 1 134455555556665
Q ss_pred HHccccccC--------hHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhh----c-hhh---HhhhHHHHHHHHh
Q 009975 277 IMGMAPLLG--------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----G-IDL---LSQSLLPAIVELA 340 (521)
Q Consensus 277 l~~i~~~~~--------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~----~-~~~---~~~~~~~~l~~~~ 340 (521)
+..++.... .......+++.++.....++.+++..++..+..+.+.+ . ... +...+++.+...+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m 400 (1049)
T 3m1i_C 321 LTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENM 400 (1049)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhc
Confidence 554433211 01123456777777777788999999999888887632 1 111 1133344443322
Q ss_pred ---cCC-------------------ChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcC--CCcHHHHHHHHHHHHH
Q 009975 341 ---EDR-------------------HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ--DKVYSIRDAAANNLKR 396 (521)
Q Consensus 341 ---~~~-------------------~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~ 396 (521)
+|. .|..|.++...+..++... .....+.+.+.+.+.+. ..+|..|++++.+++.
T Consensus 401 ~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~-~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algs 479 (1049)
T 3m1i_C 401 VRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLN-VIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGS 479 (1049)
T ss_dssp CCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred CCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 111 1245667777887777544 44445666777777665 4789999999999998
Q ss_pred HHHHhCHH---HHHhhhHHHHHhhhc-----CcchHHHHHHHHHHHHhhcccCh-HHHhhcHHHHHHhhcCCCCchHHHH
Q 009975 397 LAEEFGPE---WAMQHITPQVLEMIN-----NPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDRVPNIKFN 467 (521)
Q Consensus 397 l~~~~~~~---~~~~~l~~~l~~~l~-----~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~l~d~~~~VR~~ 467 (521)
+...++.. .+...+++.+..+.. ++++.+|..++++++.+...+.. ..+...+++.++..+.|+++.||..
T Consensus 480 ia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~ 559 (1049)
T 3m1i_C 480 ISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDM 559 (1049)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 87665543 223455555554322 35677777899999988764332 3467788899999999999999999
Q ss_pred HHHHHHHHHhhhchHH----------HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 009975 468 VAKVLQSLIPIVDQSM----------VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 518 (521)
Q Consensus 468 a~~~l~~~~~~~~~~~----------~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~ 518 (521)
|+.++..+++..+... +.+.++..+..+..+.+.+-+....+|++.+....
T Consensus 560 A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 560 ACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1049)
T ss_dssp HHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 9999999998765432 23444554555566666666677777777775443
No 50
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.66 E-value=3.6e-13 Score=144.51 Aligned_cols=483 Identities=9% Similarity=0.013 Sum_probs=293.8
Q ss_pred cCchhHHHHHHHHHHHHHHhh----cCh---hHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHHHHHHHHH
Q 009975 30 TVEETCVRDKAVESLCRIGSQ----MRE---SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY 102 (521)
Q Consensus 30 ~~~~~~vR~~a~~~l~~i~~~----~~~---~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~l 102 (521)
.+.+..+|..|...|...++. +++ +.+++.+++.+.+...+ ...+|...+..+..++.+.-+ .+..+++.+
T Consensus 50 ~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~-~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l 127 (971)
T 2x1g_F 50 LGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGG-PKIVLNRLCISLGAYIVHMLG-EWPGAIEEV 127 (971)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHTTC-C------HH
T ss_pred cCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHccc-cccHHHHHH
Confidence 356889999999999877753 444 35667888877765533 346777777666665543322 467777777
Q ss_pred HHhcCCC------ChHHHHHHHHhHHHHHHhhC-c-------------hhhHHHHHHHHHHhhcCC-C-------hhHHH
Q 009975 103 TQLCQDD------MPMVRRSAASNLGKFAATVE-P-------------AHLKTDIMSIFEDLTQDD-Q-------DSVRL 154 (521)
Q Consensus 103 ~~l~~~~------~~~vr~~a~~~l~~l~~~~~-~-------------~~~~~~l~~~l~~l~~d~-~-------~~vr~ 154 (521)
.+.++.+ ++..+..+...|..+.+... . ....+.+++++.+++.+. + ..++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~ 207 (971)
T 2x1g_F 128 INTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMN 207 (971)
T ss_dssp HHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHH
Confidence 7766543 56788888888888875421 0 012345666666655432 1 16888
Q ss_pred HHHHHHHHHhh--hcChhhhhhhhHHHHHHh----c-----------CCCChHHHHHHHHHHHHHHHHhCCCcc---ccc
Q 009975 155 LAVEGCAALGK--LLEPQDCVAHILPVIVNF----S-----------QDKSWRVRYMVANQLYELCEAVGPEPT---RMD 214 (521)
Q Consensus 155 ~a~~~l~~l~~--~~~~~~~~~~l~~~l~~~----~-----------~d~~~~vR~~~~~~l~~i~~~~~~~~~---~~~ 214 (521)
.+++++..... .++.. ....+++.+..+ . .++++.+|..+++++..+......... ...
T Consensus 208 ~al~~l~~~~~~~~ip~~-~~~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~ 286 (971)
T 2x1g_F 208 RAVKCVGTWIKNIGYTIE-GCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFV 286 (971)
T ss_dssp HHHHHHHHHHHHSCCCGG-GHHHHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHH
T ss_pred HHHHHHHHHHhhCCcCcc-ccccHHHHHHhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHH
Confidence 99999988776 34444 445566665541 1 125678999999999998863211111 122
Q ss_pred hHHHHHH-------hcCCCh---HHHHHHHHHhHHHHHhhhCH-------------HHHHHhhhHHHHHhccC-----Cc
Q 009975 215 LVPAYVR-------LLRDNE---AEVRIAAAGKVTKFCRILNP-------------ELAIQHILPCVKELSSD-----SS 266 (521)
Q Consensus 215 l~~~l~~-------~l~d~~---~~vr~~a~~~l~~l~~~~~~-------------~~~~~~~~~~l~~~~~d-----~~ 266 (521)
++|.+.. ...+++ ........+.+..+++.... ......+++.+...... .+
T Consensus 287 l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~ 366 (971)
T 2x1g_F 287 LIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVE 366 (971)
T ss_dssp HHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTT
T ss_pred HHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcc
Confidence 3333332 223333 25555666777666643211 11223445555554322 45
Q ss_pred HHHHHHHHHHHHcccccc-C-----h--------HHHHHhHHHHHHHhhc---CC-----C-------hHHHHHHHHHHH
Q 009975 267 QHVRSALASVIMGMAPLL-G-----K--------DATIEQLLPIFLSLLK---DE-----F-------PDVRLNIISKLD 317 (521)
Q Consensus 267 ~~vr~~~~~~l~~i~~~~-~-----~--------~~~~~~l~~~l~~~l~---d~-----~-------~~vr~~a~~~l~ 317 (521)
+.+...+++.+..+++.. . + ......+++.+...+. |. + ...|..+...+.
T Consensus 367 ~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~ 446 (971)
T 2x1g_F 367 ESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFM 446 (971)
T ss_dssp CTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHH
Confidence 667788877776665411 1 0 1123345555555442 11 1 146778888888
Q ss_pred HhhhhhchhhHhhhHHHHHHHHhcC-----CChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHc-CCCcHHHHHH
Q 009975 318 QVNQVIGIDLLSQSLLPAIVELAED-----RHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWL-QDKVYSIRDA 389 (521)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l-~d~~~~vr~~ 389 (521)
.++...|.+ ..+.+++.+.+.+.. .+|+.|.+++.+++.+++.+... ...+.+++.+..+. .|+++.||..
T Consensus 447 ~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~ 525 (971)
T 2x1g_F 447 YCYDVLNDY-ILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGT 525 (971)
T ss_dssp HHHTTCTTH-HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHH
T ss_pred HHHHHHhHH-HHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHH
Confidence 888877733 336667776665543 79999999999999998877653 33455666444443 2679999999
Q ss_pred HHHHHHHHHHHhCHHH-HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChH--HHhhcHHHHHHhhcCC--CCchH
Q 009975 390 AANNLKRLAEEFGPEW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKD--RVPNI 464 (521)
Q Consensus 390 a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d--~~~~V 464 (521)
++.+++.+...++.+. +...+++.+...+ + ++++..|+.++..+++.++.. .+.+.++..+...+.. .....
T Consensus 526 a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~ 602 (971)
T 2x1g_F 526 ALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSD 602 (971)
T ss_dssp HHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHH
Confidence 9999999998876432 3456777777777 3 789999999999999866543 2456677777777776 35688
Q ss_pred HHHHHHHHHHHHhhhchH----HHHhhHHHHHH---HhcCCC--CccHHHHHHHHHHHHHHhhc
Q 009975 465 KFNVAKVLQSLIPIVDQS----MVEKTIRPCLV---ELTEDP--DVDVRFFATQAIQSIDHVMM 519 (521)
Q Consensus 465 R~~a~~~l~~~~~~~~~~----~~~~~~~~~l~---~l~~D~--~~~vr~~a~~al~~l~~~~~ 519 (521)
|..+.++++.++...+.+ .+...+-|.+. .+.+.+ +.+-+..+..+++.|..+++
T Consensus 603 ~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 666 (971)
T 2x1g_F 603 SVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFS 666 (971)
T ss_dssp HHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHh
Confidence 999999999998876522 23233333333 333332 44456677777777766543
No 51
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.64 E-value=1.8e-12 Score=139.16 Aligned_cols=477 Identities=12% Similarity=0.082 Sum_probs=287.8
Q ss_pred cCchhHHHHHHHHHHHHHHhh----cChh---HHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcCCC-ChHHHHHHHHH
Q 009975 30 TVEETCVRDKAVESLCRIGSQ----MRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA-PDILKTELRSI 101 (521)
Q Consensus 30 ~~~~~~vR~~a~~~l~~i~~~----~~~~---~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~~~~l~~~ 101 (521)
++.+..+|..|...|...++. ++++ .+++.+++.+.+..+ ....+|...+..+..++.+. ++. +..+++.
T Consensus 68 ~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~-~~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~ 145 (963)
T 2x19_B 68 PDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFAS-GSKIVLTRLCVALASLALSMMPDA-WPCAVAD 145 (963)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHHHHHHHTTTT-STTHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhCccc-cchHHHH
Confidence 356889999999999877764 4443 456777777765432 23567766666666655332 222 5677777
Q ss_pred HHHhcCC-----CChHHHHHHHHhHHHHHHhhCc---------------hhhHHHHHHHHHHhhcCCCh--hHHHHHHHH
Q 009975 102 YTQLCQD-----DMPMVRRSAASNLGKFAATVEP---------------AHLKTDIMSIFEDLTQDDQD--SVRLLAVEG 159 (521)
Q Consensus 102 l~~l~~~-----~~~~vr~~a~~~l~~l~~~~~~---------------~~~~~~l~~~l~~l~~d~~~--~vr~~a~~~ 159 (521)
+.++++. +++..+..+...|..+.+.... ....+.+++++...+.+... .++..++++
T Consensus 146 l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~ 225 (963)
T 2x19_B 146 MVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKC 225 (963)
T ss_dssp HHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHH
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 7776654 3667888888888888864311 12345677777777765432 377788888
Q ss_pred HHHHhhhcChh-hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccc---cchHHHHHH-------hcCCChH
Q 009975 160 CAALGKLLEPQ-DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR---MDLVPAYVR-------LLRDNEA 228 (521)
Q Consensus 160 l~~l~~~~~~~-~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~---~~l~~~l~~-------~l~d~~~ 228 (521)
+..... ++.. .....+++.+...+. ++.+|..+++++..+.......... ..+++.+.. ...+++.
T Consensus 226 l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~ 302 (963)
T 2x19_B 226 FSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDM 302 (963)
T ss_dssp HHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCH
T ss_pred HHHHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCH
Confidence 765554 3221 122556777777664 5678999999999887532211111 112222222 1222233
Q ss_pred HHHHHHHHhHHHHHhhhCH--------HHHHHhhhHHHHHhccC-----CcHHHHHHHHHHHHcccccc---C----h--
Q 009975 229 EVRIAAAGKVTKFCRILNP--------ELAIQHILPCVKELSSD-----SSQHVRSALASVIMGMAPLL---G----K-- 286 (521)
Q Consensus 229 ~vr~~a~~~l~~l~~~~~~--------~~~~~~~~~~l~~~~~d-----~~~~vr~~~~~~l~~i~~~~---~----~-- 286 (521)
......++.+..+++.... ......+++.+.....+ .++.+...++..+..++... . .
T Consensus 303 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~ 382 (963)
T 2x19_B 303 ETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVY 382 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHH
Confidence 4444455666665543211 11223455555555543 24445555555555444311 0 0
Q ss_pred ----HHHHHhHHHHHHHhhcCCC---------------hHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHh----cCC
Q 009975 287 ----DATIEQLLPIFLSLLKDEF---------------PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA----EDR 343 (521)
Q Consensus 287 ----~~~~~~l~~~l~~~l~d~~---------------~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 343 (521)
......+++.+...+.-++ .+.|..+...+..++...+.+.+ +.+.+.+.+.+ .+.
T Consensus 383 ~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l-~~~~~~l~~~l~~~~~~~ 461 (963)
T 2x19_B 383 QQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELL-SNLYDKLGRLLTSSEEPY 461 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHH-HHHHHHHHHHHHhcCCCC
Confidence 1122344555554443211 12367777777777777764433 56667776666 678
Q ss_pred ChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHH-HHHhhhHHHHHhhhcC
Q 009975 344 HWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINN 420 (521)
Q Consensus 344 ~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~~ 420 (521)
+|+.|.+++.+++.+++.+..+ .+.+.+++.+.. +.++++.||..++.+++.+.+.++.+ .+...+++.+...+.+
T Consensus 462 ~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~ 540 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN 540 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC
Confidence 9999999999999999887652 344456664433 34568889999999999998876532 3567788888888866
Q ss_pred cchHHHHHHHHHHHHhhcccChH--HHhhcHHHHHHhhcCC--CCchHHHHHHHHHHHHHhhhchHH---HHhhHHHHHH
Q 009975 421 PHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQSM---VEKTIRPCLV 493 (521)
Q Consensus 421 ~~~~~r~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~d--~~~~VR~~a~~~l~~~~~~~~~~~---~~~~~~~~l~ 493 (521)
+.++..|+.++..+++.++.. .+.+.++..+...+.. .....|..+.++++.++...+.+. +...+++.+.
T Consensus 541 --~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~ 618 (963)
T 2x19_B 541 --PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYI 618 (963)
T ss_dssp --GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred --chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 789999999999999765543 2345666667666664 356889999999999987665222 2233333222
Q ss_pred ----Hhc-CCCCccHHHHHHHHHHHHH
Q 009975 494 ----ELT-EDPDVDVRFFATQAIQSID 515 (521)
Q Consensus 494 ----~l~-~D~~~~vr~~a~~al~~l~ 515 (521)
.+. ++.+++.+......++.+.
T Consensus 619 ~~l~~~~~~~~~~~~~~~~~~~l~~l~ 645 (963)
T 2x19_B 619 QQLEKLAEEIPNPSNKLAIVHILGLLS 645 (963)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 222 2335666665545554443
No 52
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.61 E-value=2.1e-12 Score=126.48 Aligned_cols=342 Identities=15% Similarity=0.152 Sum_probs=219.3
Q ss_pred hhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--
Q 009975 174 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-- 248 (521)
Q Consensus 174 ~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-- 248 (521)
..-+|.+..++.++++.++..++.++..++..-. ........+|.+++++++++..++..|+.+|..++..-+.+
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 3355666666666667777777776666653100 11122456777777777777778888887777776531111
Q ss_pred -HH-HHhhhHHHHHhccC-CcHHHHHHHHHHHHccccccC-hHHHHHhHHHHHHHhh------------------cCCCh
Q 009975 249 -LA-IQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLG-KDATIEQLLPIFLSLL------------------KDEFP 306 (521)
Q Consensus 249 -~~-~~~~~~~l~~~~~d-~~~~vr~~~~~~l~~i~~~~~-~~~~~~~l~~~l~~~l------------------~d~~~ 306 (521)
.+ ..-.+|.+..++.+ .+..++..++.++..++..-. +..+.+..+|.+..++ ..+++
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccH
Confidence 11 12356666666654 466677777777777765321 1222334466666654 12356
Q ss_pred HHHHHHHHHHHHhhhhhc--hhhHh--hhHHHHHHHHhc------CCChHHHHHHHHHhHHHHhhhC-------------
Q 009975 307 DVRLNIISKLDQVNQVIG--IDLLS--QSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQLG------------- 363 (521)
Q Consensus 307 ~vr~~a~~~l~~~~~~~~--~~~~~--~~~~~~l~~~~~------~~~~~vr~~~~~~l~~l~~~~~------------- 363 (521)
.|+..|..+|..+...-. ...+. ..+++.+..++. +.+......++..|..++....
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 888888888887764321 11111 244555555443 2455666666666655543321
Q ss_pred --------------hh-hhHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHhCH---H---HH-HhhhHHHHHhhhcC
Q 009975 364 --------------VG-FFDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGP---E---WA-MQHITPQVLEMINN 420 (521)
Q Consensus 364 --------------~~-~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~---~---~~-~~~l~~~l~~~l~~ 420 (521)
.+ .+....++.++.++++ .++.++++|+.+|..++..-+. . .+ ....+|.|.+++.+
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s 366 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN 366 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC
Confidence 11 1224567788888853 5799999999999999742211 1 11 24569999999999
Q ss_pred cchHHHHHHHHHHHHhhcccCh-HHHhhcHHHHHHhhcCCC--------CchHHHHHHHHHHHHHhhhc---hHHHHhhH
Q 009975 421 PHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDR--------VPNIKFNVAKVLQSLIPIVD---QSMVEKTI 488 (521)
Q Consensus 421 ~~~~~r~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~l~d~--------~~~VR~~a~~~l~~~~~~~~---~~~~~~~~ 488 (521)
++..++..++.+|+.++..-.. ..+....+|.++.+|.++ ...+...++.+|+.++..-. ........
T Consensus 367 ~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~ 446 (584)
T 3l6x_A 367 EHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQG 446 (584)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence 9999999999999999974433 345677899999999876 35788899999998875321 12334667
Q ss_pred HHHHHHhcCCC--CccHHHHHHHHHHHHH
Q 009975 489 RPCLVELTEDP--DVDVRFFATQAIQSID 515 (521)
Q Consensus 489 ~~~l~~l~~D~--~~~vr~~a~~al~~l~ 515 (521)
+|.|..++.+. ..+++..|++++..+.
T Consensus 447 I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 447 IEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp HHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 89999987765 8899999999999875
No 53
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.61 E-value=2.8e-13 Score=121.32 Aligned_cols=225 Identities=13% Similarity=0.103 Sum_probs=157.2
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhhhhhch---hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hhh
Q 009975 294 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFF 367 (521)
Q Consensus 294 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~ 367 (521)
+|.+..+++++++++|..|+.++..++..-.. .......+|.+.++++++++.+|..++.++..++..... ...
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 56666666666677777777777666543221 112235667777777777777777777777666543111 112
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC---HHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh--
Q 009975 368 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-- 442 (521)
Q Consensus 368 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-- 442 (521)
....+|.+..+++++++.+|..++.+++.++.... ........+|.+.+++.++++.+|..++.+++.++.....
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 163 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 163 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 23467788888888888888888888888874211 1122345788888899999999999999999998863221
Q ss_pred -HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch---HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 009975 443 -EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 518 (521)
Q Consensus 443 -~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~---~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~ 518 (521)
.......+|.+..++.++++.+|..++.+|+.++..... ......++|.|.+++.++++++|..|.+++..+...-
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 123456889999999999999999999999998863221 1223567888888888999999999999999887654
No 54
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.60 E-value=9.3e-12 Score=131.36 Aligned_cols=480 Identities=9% Similarity=0.062 Sum_probs=276.7
Q ss_pred chhHHhhhhHHhhhhc-CchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCC---CCcchhhhhhhhhhhcCCC
Q 009975 15 VEHAHVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE---WFTARVSACGLFHIAYPSA 90 (521)
Q Consensus 15 ~~~~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~---~~~~r~~~~~~~~~~~~~~ 90 (521)
|.-...+...+....+ +.|+..|+.|.+.|..+=+. ++ .+.... .+..+. +..+|..+...+......+
T Consensus 2 ~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s--p~-aw~~~~----~iL~~~~~~~~~vr~fa~~~L~~~I~~l 74 (980)
T 3ibv_A 2 PMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSS--ST-GWKICH----EIFSEKTKYKPSTRLICLQTLSEKVREW 74 (980)
T ss_dssp -CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS--TT-HHHHHH----HHTTCTTTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC--hh-HHHHHH----HHHhCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 3344556666654443 44789999999888877654 22 233333 333322 4677877776665544344
Q ss_pred ChH--------HHHHHHHHHHHhcC-CCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCCh-hHHHHHHHHH
Q 009975 91 PDI--------LKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQD-SVRLLAVEGC 160 (521)
Q Consensus 91 ~~~--------~~~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~-~vr~~a~~~l 160 (521)
+++ .++.+++.+..... +..+.||...+.++..++....+ ..|+.+++.+..+.+.++. ..-....+++
T Consensus 75 ~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p-~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL 153 (980)
T 3ibv_A 75 NNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP-SNWNDFFASLQGVIAASSQSEFSNFYLKVL 153 (980)
T ss_dssp CTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc-ccCchHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 433 34445555544211 34578999999999999987543 4577777777776654333 2233344444
Q ss_pred HHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHH-HHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHH
Q 009975 161 AALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQ-LYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT 239 (521)
Q Consensus 161 ~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~-l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 239 (521)
..+.+.+.+.. + +. ..........+|...... +..+. +..+..+.+.....++.++..+++++.
T Consensus 154 ~~i~EEv~~~~----~-~~-~~~~~~r~~~lkd~m~~~~~~~i~---------~~~~~iL~~~~~~~~~~l~~~~L~~l~ 218 (980)
T 3ibv_A 154 LSIGDEIADSL----V-LK-TDVQIQKDNLVKDAIRANDMSDIV---------SFVYEMMLAYSNAKNYGTVGLCLQVYA 218 (980)
T ss_dssp HHHHHHHCCCC----S-CC-CHHHHHHHHHHHHHHHHHTHHHHH---------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHhcc----c-cc-CHHHHhhhHHHHHHHHhccHHHHH---------HHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 44444332110 0 00 000000000111111110 11111 122233333333345678888888888
Q ss_pred HHHhhhCHHHHH-HhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHH------HHHHhhc-CCChHHHHH
Q 009975 240 KFCRILNPELAI-QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP------IFLSLLK-DEFPDVRLN 311 (521)
Q Consensus 240 ~l~~~~~~~~~~-~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~------~l~~~l~-d~~~~vr~~ 311 (521)
.....++...+. ..+++.+.+.+.+ +.+|.++++++..+...-.+......++. .+..+.. +.+.+++++
T Consensus 219 s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~ 296 (980)
T 3ibv_A 219 QWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEH 296 (980)
T ss_dssp HHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHH
T ss_pred HHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHH
Confidence 888877665432 4567777777765 67888999988887654332211112221 1111111 456666655
Q ss_pred HHHHHHHhhhhh-----ch-----h------hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhh---Ch-----h--
Q 009975 312 IISKLDQVNQVI-----GI-----D------LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GV-----G-- 365 (521)
Q Consensus 312 a~~~l~~~~~~~-----~~-----~------~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~---~~-----~-- 365 (521)
.++-+..++..+ .+ + .....++|.+..+..++++.+-..++..+..+.... +. +
T Consensus 297 la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~ 376 (980)
T 3ibv_A 297 VAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASL 376 (980)
T ss_dssp HHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHH
T ss_pred HHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHH
Confidence 554443332210 11 0 122567888888888888888777777766655432 11 1
Q ss_pred -hhHHHHHHHHHHHcC-------CC---------cHHHHHHHHHHHHHHHHHhCHHHHHh----hhHHHHHhhhc---Cc
Q 009975 366 -FFDDKLGALCMQWLQ-------DK---------VYSIRDAAANNLKRLAEEFGPEWAMQ----HITPQVLEMIN---NP 421 (521)
Q Consensus 366 -~~~~~l~~~l~~~l~-------d~---------~~~vr~~a~~~l~~l~~~~~~~~~~~----~l~~~l~~~l~---~~ 421 (521)
.+...+++.+..-+. |. ..+.|.... .+...+..+|++...+ .+.+.+.+.+. +.
T Consensus 377 ~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~ 455 (980)
T 3ibv_A 377 KEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPEN 455 (980)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 223334455444433 11 124666666 6667777778776666 55555555552 46
Q ss_pred chHHHHHHHHHHHHhhcccChH--------HHhhcHHHHHHhhcC-----CCCchHHHHHHHHHHHHHhhhchH-HHHhh
Q 009975 422 HYLYRMTILRAISLLAPVMGSE--------ITCSRLLPVVINASK-----DRVPNIKFNVAKVLQSLIPIVDQS-MVEKT 487 (521)
Q Consensus 422 ~~~~r~~a~~~l~~l~~~~~~~--------~~~~~il~~l~~~l~-----d~~~~VR~~a~~~l~~~~~~~~~~-~~~~~ 487 (521)
+|+.+++++.+++.+++.+... ...+.+++.+..+++ ++++.||..++++++...+.+... .+.+.
T Consensus 456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~ 535 (980)
T 3ibv_A 456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPA 535 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHH
T ss_pred CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 7999999999999999865531 224467777777755 889999999999999999987642 23344
Q ss_pred HHHHHHH--hcCCCCccHHHHHHHHHHHHHHhhcc
Q 009975 488 IRPCLVE--LTEDPDVDVRFFATQAIQSIDHVMMS 520 (521)
Q Consensus 488 ~~~~l~~--l~~D~~~~vr~~a~~al~~l~~~~~~ 520 (521)
+++.+.. ...+++..||..|+.++.++++.+++
T Consensus 536 ~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 536 LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 4444444 45688999999999999999987654
No 55
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.60 E-value=6.3e-13 Score=129.32 Aligned_cols=147 Identities=11% Similarity=0.078 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHhCHH-------HH-HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhc
Q 009975 368 DDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPE-------WA-MQHITPQVLEMINNPHYLYRMTILRAISLLAP 438 (521)
Q Consensus 368 ~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~-------~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~ 438 (521)
....++.+..++.+ .++.++++|+.+|..++..-+.. .+ ....+|.|.+++.+++..+|..|+++++.++.
T Consensus 281 ~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~ 360 (457)
T 1xm9_A 281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR 360 (457)
T ss_dssp SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc
Confidence 34567777777765 46899999999999987533221 12 24678999999999999999999999999986
Q ss_pred ccCh-HHHhhcHHHHHHhhcCCCCc------hHHHHHHHHHHHHHhhhchH---HHHhhHHHHHHHhcCCC-CccHHHHH
Q 009975 439 VMGS-EITCSRLLPVVINASKDRVP------NIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDP-DVDVRFFA 507 (521)
Q Consensus 439 ~~~~-~~~~~~il~~l~~~l~d~~~------~VR~~a~~~l~~~~~~~~~~---~~~~~~~~~l~~l~~D~-~~~vr~~a 507 (521)
.-.. ..+....+|.++++|..+++ .+...++.+++.+...-+.. ......+|.|.++.... +.+++..|
T Consensus 361 ~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A 440 (457)
T 1xm9_A 361 HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440 (457)
T ss_dssp SGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHH
Confidence 3221 22346788999999988754 57778889998887543221 12255788888888777 88999999
Q ss_pred HHHHHHH
Q 009975 508 TQAIQSI 514 (521)
Q Consensus 508 ~~al~~l 514 (521)
.+.+..+
T Consensus 441 ~~~L~~~ 447 (457)
T 1xm9_A 441 RLLLSDM 447 (457)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9998765
No 56
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.59 E-value=9.1e-14 Score=122.72 Aligned_cols=199 Identities=15% Similarity=0.132 Sum_probs=159.6
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHH-hhhhhc-----hhhHhhhHHHHHHHHh-cCCChHHHHHHHHHhHHHHhhhC-
Q 009975 292 QLLPIFLSLLKDEFPDVRLNIISKLDQ-VNQVIG-----IDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLG- 363 (521)
Q Consensus 292 ~l~~~l~~~l~d~~~~vr~~a~~~l~~-~~~~~~-----~~~~~~~~~~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~- 363 (521)
.+-+-|...+.+.++..|..++..+.. +++... ...+ ..++..+.+.+ +|.+..+|..++.+++.+++.++
T Consensus 16 kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~ 94 (249)
T 2qk1_A 16 KLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT 94 (249)
T ss_dssp GSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT
T ss_pred hCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 344455667788889999999988888 764311 1122 46677888877 79999999999999999999887
Q ss_pred hh---hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHH---HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 009975 364 VG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLA 437 (521)
Q Consensus 364 ~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~ 437 (521)
+. .|...++|.++..++|....||.++..++..++...++.. ..+.+++.+...+++++|.+|+.++.+++.++
T Consensus 95 ~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 95 PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM 174 (249)
T ss_dssp TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 43 4556689999999999999999999999999998874211 14468888899999999999999999999999
Q ss_pred cccCh--H---HHh-hcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHh
Q 009975 438 PVMGS--E---ITC-SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 495 (521)
Q Consensus 438 ~~~~~--~---~~~-~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l 495 (521)
...+. . .+. +.++|.+.+++.|+.+.||.+|..+++.++..+|.+.+ .|.+..+
T Consensus 175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~----~p~l~~L 234 (249)
T 2qk1_A 175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTF----VKTLEHL 234 (249)
T ss_dssp HHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGG----HHHHHHS
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHH----HHHHHHH
Confidence 87763 2 245 88999999999999999999999999999999997554 4444444
No 57
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1e-11 Score=123.48 Aligned_cols=475 Identities=8% Similarity=0.063 Sum_probs=297.9
Q ss_pred CchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhh----cCCCCcchhhhhhhhhhhcCCCChHH-----HHHHHHH
Q 009975 31 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA----AGEWFTARVSACGLFHIAYPSAPDIL-----KTELRSI 101 (521)
Q Consensus 31 ~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~-----~~~l~~~ 101 (521)
.+.+++|..++-.+..+-+..+ +...+.+.-++..++ .+....-...+...+..+++-.|+.. .+.+.+.
T Consensus 181 ~~~~~~~~~~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~ 259 (778)
T 3opb_A 181 ISEDEVKSMMLIIFAELQSSFQ-KDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKL 259 (778)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHH
T ss_pred cChhhhHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHH
Confidence 4556888888877777777654 555666667776554 12112233445566667777665441 1223455
Q ss_pred HHHhc-CCCChHHHHHHHHhHHHHHHhhC-chhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh-hhhhhhhHH
Q 009975 102 YTQLC-QDDMPMVRRSAASNLGKFAATVE-PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHILP 178 (521)
Q Consensus 102 l~~l~-~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~ 178 (521)
+.+.. +.++..+..++.+.+...+..-. .+.+.+...+++.+++++ +.+|..|.-+|..+...-.. +.....+.+
T Consensus 260 l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~ 337 (778)
T 3opb_A 260 FKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSE 337 (778)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHH
Confidence 55443 44566666777666665542111 123455667888888865 57888888888888765432 233455888
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHhCCCc-----cccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHhhhCHHH---
Q 009975 179 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-----TRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPEL--- 249 (521)
Q Consensus 179 ~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~-----~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~--- 249 (521)
.+.+++.+++...|..+++.|..+.. .++. ....++..+++++++ ++..+-..++..|..+....+...
T Consensus 338 ~~~~~L~~~~~~~~~~AvEgLaYLSl--~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~ 415 (778)
T 3opb_A 338 IFINAISRRIVPKVEMSVEALAYLSL--KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXX 415 (778)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHTT--SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHhC--CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhh
Confidence 88888887766679999999987752 1111 124568888888885 566788888888888877653210
Q ss_pred -HHHhhhHHHHHhc----cCCcHHHHH-HHHH-HHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhh
Q 009975 250 -AIQHILPCVKELS----SDSSQHVRS-ALAS-VIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 322 (521)
Q Consensus 250 -~~~~~~~~l~~~~----~d~~~~vr~-~~~~-~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 322 (521)
-..++.++..... .+....-.. .... ....+ ....++|.+..+++++++.+|..+++++..+...
T Consensus 416 ~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l--------~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d 487 (778)
T 3opb_A 416 XXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI--------LRTELISFLKREMHNLSPNCKQQVVRIIYNITRS 487 (778)
T ss_dssp C------------------CCTHHHHHHHHHHHHHHHT--------TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS
T ss_pred hhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH--------HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 1111111111100 000100000 0000 00111 1234799999999999999999999999999754
Q ss_pred hc--hhhHhhhHHHHHHHHhcCCChH---HHHHHHHHhHHHHhhhChhhhH-----HHHHHHHHHHcCC-CcH-------
Q 009975 323 IG--IDLLSQSLLPAIVELAEDRHWR---VRLAIIEYIPLLASQLGVGFFD-----DKLGALCMQWLQD-KVY------- 384 (521)
Q Consensus 323 ~~--~~~~~~~~~~~l~~~~~~~~~~---vr~~~~~~l~~l~~~~~~~~~~-----~~l~~~l~~~l~d-~~~------- 384 (521)
-. .....+..++.+.+++.+.... .|..++.+|..+.-...+.... -..+|.+..+|.. +..
T Consensus 488 ~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~ 567 (778)
T 3opb_A 488 KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHN 567 (778)
T ss_dssp GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---
T ss_pred HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccc
Confidence 22 1123457788888887665433 8999999998887554332211 1466777888872 221
Q ss_pred ------HHHHHHHHHHHHHHHHhCH---H----HHH-hhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccC---hHHHh-
Q 009975 385 ------SIRDAAANNLKRLAEEFGP---E----WAM-QHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---SEITC- 446 (521)
Q Consensus 385 ------~vr~~a~~~l~~l~~~~~~---~----~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~---~~~~~- 446 (521)
--+..|+.+|..++..-+. + .+. ...+|.+.+++.+.+..+|.+|+++++.+...-. .+++.
T Consensus 568 ~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~ 647 (778)
T 3opb_A 568 DEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNL 647 (778)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCC
T ss_pred cccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhh
Confidence 1266788898888864321 1 223 2588999999999999999999999999996322 12221
Q ss_pred --hc---HHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch---HHHH-hhHHHHHHHhcCC--CCccHHHHHHHHHHHHH
Q 009975 447 --SR---LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVE-KTIRPCLVELTED--PDVDVRFFATQAIQSID 515 (521)
Q Consensus 447 --~~---il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~---~~~~-~~~~~~l~~l~~D--~~~~vr~~a~~al~~l~ 515 (521)
+. =++.++.+++..+..+|.+|+.+|..+....+. ..+. ...++.+..++.+ ++.++|..++.++..|.
T Consensus 648 ~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 648 ENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp SSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred cCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 11 277899999999999999999999998653322 1222 2456666677777 89999999999999998
Q ss_pred Hhh
Q 009975 516 HVM 518 (521)
Q Consensus 516 ~~~ 518 (521)
...
T Consensus 728 ~~~ 730 (778)
T 3opb_A 728 EVI 730 (778)
T ss_dssp TTC
T ss_pred Hhh
Confidence 643
No 58
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.58 E-value=1.8e-11 Score=129.16 Aligned_cols=500 Identities=12% Similarity=0.068 Sum_probs=290.6
Q ss_pred hhHHhhhhHHhhhhcCchh-HHHHHHHHHHHHHHhhcChh----------H---HHH--------hHHHHHHHhh----c
Q 009975 16 EHAHVLLPPLETLCTVEET-CVRDKAVESLCRIGSQMRES----------D---LVD--------WYIPLVKRLA----A 69 (521)
Q Consensus 16 ~~~~~l~~~l~~l~~~~~~-~vR~~a~~~l~~i~~~~~~~----------~---~~~--------~l~p~i~~~~----~ 69 (521)
+.|+.+++.+..+.+.++. ..-...++.+..+.+.+... + +.+ .+.+.+.... .
T Consensus 124 ~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~ 203 (980)
T 3ibv_A 124 SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSN 203 (980)
T ss_dssp TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhc
Confidence 4555666666665554333 34455666666665654210 0 011 1122222222 2
Q ss_pred CCCCcchhhhhhhhhhhcCCCChH--HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHH------HH
Q 009975 70 GEWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMS------IF 141 (521)
Q Consensus 70 ~~~~~~r~~~~~~~~~~~~~~~~~--~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~------~l 141 (521)
..+...+..++..++....-.+.. ....+++.+.+++.+ +.+|..|+++|..++..-........++. .+
T Consensus 204 ~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~ 281 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFF 281 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHH
Confidence 234445566667777766655544 336788888888875 79999999999998876443222222222 22
Q ss_pred HHhhc-CCChhHHHHHHHHHHHHhhh------cC----hh------hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 009975 142 EDLTQ-DDQDSVRLLAVEGCAALGKL------LE----PQ------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 204 (521)
Q Consensus 142 ~~l~~-d~~~~vr~~a~~~l~~l~~~------~~----~~------~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~ 204 (521)
..+.. +++..++...++.+..+++. .+ .+ .....+++.+.....+++.+|-..+..-+..+..
T Consensus 282 ~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~ 361 (980)
T 3ibv_A 282 SKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLV 361 (980)
T ss_dssp CC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHH
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence 22222 44555655555555544433 11 00 2234588889999999888888877776666654
Q ss_pred HhC---C-Cccc-------cchHHHHHHhcC-------C-----Ch----HHHHHHHHHhHHHHHhhhCHHHHHH----h
Q 009975 205 AVG---P-EPTR-------MDLVPAYVRLLR-------D-----NE----AEVRIAAAGKVTKFCRILNPELAIQ----H 253 (521)
Q Consensus 205 ~~~---~-~~~~-------~~l~~~l~~~l~-------d-----~~----~~vr~~a~~~l~~l~~~~~~~~~~~----~ 253 (521)
... . .... ..+++.+.+-++ | ++ .+.|+... .+-.....++++.+.+ .
T Consensus 362 ~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~ 440 (980)
T 3ibv_A 362 SLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSA 440 (980)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHH
Confidence 332 1 1111 223333333221 1 11 24666666 6666777778887777 6
Q ss_pred hhHHHHHhc---cCCcHHHHHHHHHHHHccccccChH--------HHHHhHHHHHHHhhc-----CCChHHHHHHHHHHH
Q 009975 254 ILPCVKELS---SDSSQHVRSALASVIMGMAPLLGKD--------ATIEQLLPIFLSLLK-----DEFPDVRLNIISKLD 317 (521)
Q Consensus 254 ~~~~l~~~~---~d~~~~vr~~~~~~l~~i~~~~~~~--------~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~ 317 (521)
+.+.+.+.+ .+.+|+.+++++.+++.+++.+... .....+++.+..+++ ++.+.||..+++.++
T Consensus 441 i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~ 520 (980)
T 3ibv_A 441 ITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILV 520 (980)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH
Confidence 666666655 2467999999999999998876431 123357777777765 888999999999999
Q ss_pred Hhhhhhchh-hHhhhHHHHHHH--HhcCCChHHHHHHHHHhHHHHhhhChhh--hHHHHHHHHHHHcCC---C-------
Q 009975 318 QVNQVIGID-LLSQSLLPAIVE--LAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQD---K------- 382 (521)
Q Consensus 318 ~~~~~~~~~-~~~~~~~~~l~~--~~~~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d---~------- 382 (521)
+..+.+... .+...+++.+.. .+.+++.+||.+++.++..+++.++... +.+.++..+..++.- +
T Consensus 521 rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~ 600 (980)
T 3ibv_A 521 RYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAP 600 (980)
T ss_dssp HTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CS
T ss_pred HHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCccccc
Confidence 998877632 122444444444 4557889999999999999999987642 233344443333331 1
Q ss_pred -----------cHHHHHHHHHHHHHHHHHhCH--H---HHHhhhHHHH----HhhhcCc----chHH-HHHHHHHHHHhh
Q 009975 383 -----------VYSIRDAAANNLKRLAEEFGP--E---WAMQHITPQV----LEMINNP----HYLY-RMTILRAISLLA 437 (521)
Q Consensus 383 -----------~~~vr~~a~~~l~~l~~~~~~--~---~~~~~l~~~l----~~~l~~~----~~~~-r~~a~~~l~~l~ 437 (521)
..+-+....+++|.++...+. + .+.+.+++.+ ...+... +... -...+.+++.++
T Consensus 601 ~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~la 680 (980)
T 3ibv_A 601 VPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFA 680 (980)
T ss_dssp SCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHh
Confidence 123466688899999877652 1 1223343333 3333221 1111 225577778888
Q ss_pred cccCh--------HHHhhcHHHHHHhhcC--CCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHH
Q 009975 438 PVMGS--------EITCSRLLPVVINASK--DRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFA 507 (521)
Q Consensus 438 ~~~~~--------~~~~~~il~~l~~~l~--d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a 507 (521)
+.+.. .......++.+...+. ..+..||.++..++..+...+|.+. .+.+-+.+..+..+-...--...
T Consensus 681 kgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~-~p~lp~~i~~ll~~~~~~e~~~f 759 (980)
T 3ibv_A 681 KGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDM-LPKVPQLISILLNSIDMNELVDV 759 (980)
T ss_dssp HTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHH-TTTHHHHHHHHHHHCCTTTHHHH
T ss_pred ccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhH-HHHHHHHHHHHHhcCCHHHHHHH
Confidence 75532 1123455666655554 4578899999999999999888763 24444444444433222223344
Q ss_pred HHHHHHHHHhhc
Q 009975 508 TQAIQSIDHVMM 519 (521)
Q Consensus 508 ~~al~~l~~~~~ 519 (521)
.+.++.+...++
T Consensus 760 L~l~~qli~~f~ 771 (980)
T 3ibv_A 760 LSFISQLIHIYK 771 (980)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 555665555544
No 59
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.57 E-value=3.1e-11 Score=130.13 Aligned_cols=447 Identities=8% Similarity=0.001 Sum_probs=284.4
Q ss_pred cCchhHHHHHHHHHHHHHHhh----cChh---HHHHhHHHHHHHhhcCC-----CCcchhhhhhhhhhhcCCCChHHHHH
Q 009975 30 TVEETCVRDKAVESLCRIGSQ----MRES---DLVDWYIPLVKRLAAGE-----WFTARVSACGLFHIAYPSAPDILKTE 97 (521)
Q Consensus 30 ~~~~~~vR~~a~~~l~~i~~~----~~~~---~~~~~l~p~i~~~~~~~-----~~~~r~~~~~~~~~~~~~~~~~~~~~ 97 (521)
++.+..+|..|...|...+.. ++++ .+++.++..+.....+. ...+|...+.++..++.+.-+..++.
T Consensus 59 ~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ 138 (1049)
T 3m1i_C 59 FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPE 138 (1049)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTT
T ss_pred hCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchH
Confidence 356889999999999877653 4443 45667777766544322 23566666666665554321123667
Q ss_pred HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc---------------h---hhHHHHHHHHHHhhcC-CChhHHHHHHH
Q 009975 98 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---------------A---HLKTDIMSIFEDLTQD-DQDSVRLLAVE 158 (521)
Q Consensus 98 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~---------------~---~~~~~l~~~l~~l~~d-~~~~vr~~a~~ 158 (521)
+++.+.+.++ .++..+..+...|..+.+.+.. + ...+.+++.+.+.+.+ .+..++..+++
T Consensus 139 ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~ 217 (1049)
T 3m1i_C 139 FIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLE 217 (1049)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 7777777765 5566788888888888765431 0 1123445555555554 35678999999
Q ss_pred HHHHHhhhcChhh-hhhhhHHHHHH-hcCCCChHHHHHHHHHHHHHHHHhCCCc---cccc-------hHHHHHH-----
Q 009975 159 GCAALGKLLEPQD-CVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEP---TRMD-------LVPAYVR----- 221 (521)
Q Consensus 159 ~l~~l~~~~~~~~-~~~~l~~~l~~-~~~d~~~~vR~~~~~~l~~i~~~~~~~~---~~~~-------l~~~l~~----- 221 (521)
++......++... ..+.+++.+.. +. .++.+|..+++++..++..--+.. .... ++..+..
T Consensus 218 ~l~~~l~wi~~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~ 295 (1049)
T 3m1i_C 218 SLLRYLHWIPYRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPV 295 (1049)
T ss_dssp HHHHHTTTSCTHHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHhhCCHHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9988777665332 33456666653 33 268899999999998886521111 0111 1221211
Q ss_pred ---------hcCCChHHHHHHHHHhHHHHHhhhC--------HHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHcccccc
Q 009975 222 ---------LLRDNEAEVRIAAAGKVTKFCRILN--------PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 284 (521)
Q Consensus 222 ---------~l~d~~~~vr~~a~~~l~~l~~~~~--------~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~ 284 (521)
...|.+.++....++.+..+++... .......+++.+......++..+...+++.+..++...
T Consensus 296 ~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l 375 (1049)
T 3m1i_C 296 TADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADL 375 (1049)
T ss_dssp TSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 1235566666666666655554321 12233456777777666778888888888777765521
Q ss_pred -----Ch---HHHHHhHHHHHHHhhcCC-------------------C---hHHHHHHHHHHHHhhhhhchhhHhhhHHH
Q 009975 285 -----GK---DATIEQLLPIFLSLLKDE-------------------F---PDVRLNIISKLDQVNQVIGIDLLSQSLLP 334 (521)
Q Consensus 285 -----~~---~~~~~~l~~~l~~~l~d~-------------------~---~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 334 (521)
.. ......+++.+...+.-+ + ...|+.+...+..++...+ ....+.+.+
T Consensus 376 ~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~-~~~l~~v~~ 454 (1049)
T 3m1i_C 376 FYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMIS 454 (1049)
T ss_dssp HHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHH
T ss_pred HhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCH-HHHHHHHHH
Confidence 11 123445666666654211 1 1346667777777765444 333366677
Q ss_pred HHHHHhc--CCChHHHHHHHHHhHHHHhhhChh---hhHHHHHHHHHHHcC-----CCcHHHHHHHHHHHHHHHHHhCHH
Q 009975 335 AIVELAE--DRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQ-----DKVYSIRDAAANNLKRLAEEFGPE 404 (521)
Q Consensus 335 ~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~ 404 (521)
.+.+.+. ..+|+.|.+++.+++.++..++.. .+.+.+++.+..+.. |+.+.+|..++.+++.+...+...
T Consensus 455 ~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~ 534 (1049)
T 3m1i_C 455 KLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH 534 (1049)
T ss_dssp HHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH
Confidence 7776664 478999999999999998777654 335566666666432 456677777889999887665332
Q ss_pred -HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH----------HhhcHHHHHHhhcCCCCchHHHHHHHHHH
Q 009975 405 -WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----------TCSRLLPVVINASKDRVPNIKFNVAKVLQ 473 (521)
Q Consensus 405 -~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----------~~~~il~~l~~~l~d~~~~VR~~a~~~l~ 473 (521)
.+...+++.+.+.+.+++.++|..|+.++..+++.++... +.+.++..+...+.+....-+....++++
T Consensus 535 ~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~ 614 (1049)
T 3m1i_C 535 WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACG 614 (1049)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2456678888888899999999999999999998776542 34556666666677666666778889999
Q ss_pred HHHhhhc
Q 009975 474 SLIPIVD 480 (521)
Q Consensus 474 ~~~~~~~ 480 (521)
.++...+
T Consensus 615 ~ii~~~~ 621 (1049)
T 3m1i_C 615 IIISEER 621 (1049)
T ss_dssp HHHHTCC
T ss_pred HHHHcCC
Confidence 9987766
No 60
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.57 E-value=1.7e-13 Score=122.74 Aligned_cols=224 Identities=16% Similarity=0.118 Sum_probs=172.6
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch---hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hh
Q 009975 293 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GF 366 (521)
Q Consensus 293 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~ 366 (521)
-.+.+...++++++++|..|+.++..+...-.. .......+|.+.++++++++.+|..++.++..++..... ..
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 467788888899999999999999766553111 122356788999999998899999999998888753221 12
Q ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh-
Q 009975 367 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS- 442 (521)
Q Consensus 367 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~- 442 (521)
.....+|.+..+++++++.+|..|+.+|+.+...... .......+|.+.+++.++++.+|..++.+++.++.....
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 172 (252)
T 4db8_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 2234788999999999999999999999998753321 123456899999999999999999999999999863221
Q ss_pred --HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch---HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975 443 --EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 443 --~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~---~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~ 516 (521)
.......+|.+..++.++++.+|..++.+|+.++..... .......+|.|.+++.+.++++|..|++++..+..
T Consensus 173 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 113366889999999999999999999999999853221 12345688999999999999999999999988753
No 61
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.56 E-value=1.7e-12 Score=126.35 Aligned_cols=148 Identities=12% Similarity=0.050 Sum_probs=108.6
Q ss_pred hhHHHHHHHHhcC-CChHHHHHHHHHhHHHHhhhChh-------hh-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 009975 330 QSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVG-------FF-DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 400 (521)
Q Consensus 330 ~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~-------~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 400 (521)
...++.+..++.+ +++.++..++.++..++..-+.. .+ ....+|.+..++.+++..++..|+.+|..+...
T Consensus 282 ~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 4556777776644 56899999999998887543321 11 134679999999999999999999999999763
Q ss_pred hCH-HHHHhhhHHHHHhhhcCcc------hHHHHHHHHHHHHhhcccChH---HHhhcHHHHHHhhcCCC-CchHHHHHH
Q 009975 401 FGP-EWAMQHITPQVLEMINNPH------YLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDR-VPNIKFNVA 469 (521)
Q Consensus 401 ~~~-~~~~~~l~~~l~~~l~~~~------~~~r~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~l~d~-~~~VR~~a~ 469 (521)
-.. ..+....+|.|.+++.+++ ..+...++.+++.+...-... ......++.+..++.++ +..++..|+
T Consensus 362 ~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~ 441 (457)
T 1xm9_A 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR 441 (457)
T ss_dssp GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHH
Confidence 321 2234568899999887754 356778888888887533221 12346789999999998 899999999
Q ss_pred HHHHHHHh
Q 009975 470 KVLQSLIP 477 (521)
Q Consensus 470 ~~l~~~~~ 477 (521)
.+|..+..
T Consensus 442 ~~L~~~~~ 449 (457)
T 1xm9_A 442 LLLSDMWS 449 (457)
T ss_dssp HHHHTTSS
T ss_pred HHHHHHHc
Confidence 99988765
No 62
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.56 E-value=8.3e-12 Score=122.22 Aligned_cols=213 Identities=15% Similarity=0.123 Sum_probs=141.8
Q ss_pred cHHHHHHHHHHHHccccccC--hHHHH--HhHHHHHHHhhc------CCChHHHHHHHHHHHHhhhhh------------
Q 009975 266 SQHVRSALASVIMGMAPLLG--KDATI--EQLLPIFLSLLK------DEFPDVRLNIISKLDQVNQVI------------ 323 (521)
Q Consensus 266 ~~~vr~~~~~~l~~i~~~~~--~~~~~--~~l~~~l~~~l~------d~~~~vr~~a~~~l~~~~~~~------------ 323 (521)
+..|+..++.++.+++..-. ..... .-+++.++.+++ +.+......|+.+|..++...
T Consensus 205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 45677777777777764321 11111 123444444443 244556666666665543221
Q ss_pred ---------------chhhH-hhhHHHHHHHHhc-CCChHHHHHHHHHhHHHHhhhChh------h-hHHHHHHHHHHHc
Q 009975 324 ---------------GIDLL-SQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG------F-FDDKLGALCMQWL 379 (521)
Q Consensus 324 ---------------~~~~~-~~~~~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~------~-~~~~l~~~l~~~l 379 (521)
|.+.+ ....++.+..++. ..++.+++.++.+|..++..-+.. . .....+|.+..++
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL 364 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL 364 (584)
T ss_dssp -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence 11111 2345677777774 467899999999999887532211 1 1245699999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhCH-HHHHhhhHHHHHhhhcCc--------chHHHHHHHHHHHHhhcc---cChHHHhh
Q 009975 380 QDKVYSIRDAAANNLKRLAEEFGP-EWAMQHITPQVLEMINNP--------HYLYRMTILRAISLLAPV---MGSEITCS 447 (521)
Q Consensus 380 ~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~~~--------~~~~r~~a~~~l~~l~~~---~~~~~~~~ 447 (521)
..++..++..|+.+|..++..-.. ..+....+|.|..++.++ +..++..++.+++.+... ........
T Consensus 365 ~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~ 444 (584)
T 3l6x_A 365 TNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRET 444 (584)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence 999999999999999999865432 234567899999988765 356788899999888642 11122346
Q ss_pred cHHHHHHhhcCCC--CchHHHHHHHHHHHHHhh
Q 009975 448 RLLPVVINASKDR--VPNIKFNVAKVLQSLIPI 478 (521)
Q Consensus 448 ~il~~l~~~l~d~--~~~VR~~a~~~l~~~~~~ 478 (521)
..+|.+..++.+. .+.++..|+.+|..+..+
T Consensus 445 g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 445 QGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp THHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred CChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 7899999999886 889999999999998743
No 63
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.55 E-value=6.5e-11 Score=125.04 Aligned_cols=490 Identities=9% Similarity=0.042 Sum_probs=297.8
Q ss_pred HHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhh----hcCCCChH
Q 009975 18 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHI----AYPSAPDI 93 (521)
Q Consensus 18 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~----~~~~~~~~ 93 (521)
+..+-..+..+.+.+++ .|+.|.+.|..+-+. + +.+..+...+. .+.+..+|..+...+.. -+..++++
T Consensus 15 v~~Le~av~~ly~p~~~-~r~~A~~~L~~~q~s--p-~aw~~~~~iL~---~s~~~~vR~faa~~Lk~~I~~~W~~L~~e 87 (1023)
T 4hat_C 15 IALLDQVVSTFYQGSGV-QQKQAQEILTKFQDN--P-DAWQKADQILQ---FSTNPQSKFIALSILDKLITRKWKLLPND 87 (1023)
T ss_dssp HHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHC--T-TGGGGHHHHHH---HCCCHHHHHHHHHHHHHHHHHHGGGSCHH
T ss_pred HHHHHHHHHHHhCCChH-HHHHHHHHHHHHHcC--c-cHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhhhhcCCHH
Confidence 44555556665555444 899999988876664 2 22444444442 23455788777665543 33456665
Q ss_pred ----HHHHHHHHHHHhcCCC-----ChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHh
Q 009975 94 ----LKTELRSIYTQLCQDD-----MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG 164 (521)
Q Consensus 94 ----~~~~l~~~l~~l~~~~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~ 164 (521)
.++.++..+.+...++ .+.+|...+.++..++...-+ ..|+.+++.+..+++. ++........++..+.
T Consensus 88 ~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p-~~Wp~~l~dL~~~l~~-~~~~~~~~L~iL~~L~ 165 (1023)
T 4hat_C 88 HRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSSS-SVNVCENNMIVLKLLS 165 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh-hhchHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 4455555555544333 467888899999999887543 3588888888887764 3445667777777776
Q ss_pred hhcCh---h---------------hhhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCCCc-cccchHHHHH-Hhc
Q 009975 165 KLLEP---Q---------------DCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYV-RLL 223 (521)
Q Consensus 165 ~~~~~---~---------------~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~~~~-~~~~l~~~l~-~~l 223 (521)
+.+.+ + ...+.+++++...++ ..++.+...+.++++.+...++.+. ....+++.+. .++
T Consensus 166 EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L 245 (1023)
T 4hat_C 166 EEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM 245 (1023)
T ss_dssp HHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHc
Confidence 65311 1 111234455544443 3566788888888888776544322 2356888888 887
Q ss_pred CCChHHHHHHHHHhHHHHHhh-h-CHH-HHH-------HhhhHHH-HHh-------------ccCCcHHHHHHHHHHHHc
Q 009975 224 RDNEAEVRIAAAGKVTKFCRI-L-NPE-LAI-------QHILPCV-KEL-------------SSDSSQHVRSALASVIMG 279 (521)
Q Consensus 224 ~d~~~~vr~~a~~~l~~l~~~-~-~~~-~~~-------~~~~~~l-~~~-------------~~d~~~~vr~~~~~~l~~ 279 (521)
.+ +..|.+|+++|..+... . ++. .+. +.+++.+ ..+ ..+.+.......+..+..
T Consensus 246 ~~--~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~ 323 (1023)
T 4hat_C 246 TS--PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTT 323 (1023)
T ss_dssp HS--HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHH
Confidence 65 57999999999999873 2 220 111 1222222 111 122334444444444443
Q ss_pred ccccc----Ch----HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchh-----hH---hhhHHHHHHHHh---
Q 009975 280 MAPLL----GK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-----LL---SQSLLPAIVELA--- 340 (521)
Q Consensus 280 i~~~~----~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-----~~---~~~~~~~l~~~~--- 340 (521)
++... .. .......+..++.+...++.++-..++..+..+...+-.+ .+ ...+++.+.+-+
T Consensus 324 ~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P 403 (1023)
T 4hat_C 324 YLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRP 403 (1023)
T ss_dssp HHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33221 11 1112223446666667778888888888877776533211 11 123333333211
Q ss_pred c------C--CCh----------HHHH-HHHHHhHHHHhhhChhhhHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHH
Q 009975 341 E------D--RHW----------RVRL-AIIEYIPLLASQLGVGFFDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAE 399 (521)
Q Consensus 341 ~------~--~~~----------~vr~-~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~ 399 (521)
. + ..| .... ..=+.|..+....+. ...+.+.+.+.+.+.+ .+|..|++++.++|.+..
T Consensus 404 ~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~-~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~ 482 (1023)
T 4hat_C 404 EEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISG 482 (1023)
T ss_dssp TTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTT
T ss_pred cccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHc
Confidence 1 1 122 0111 011444444443333 4455666777666654 689999999999999987
Q ss_pred HhCHH---HHHhhhHHHHHhhhc-----CcchHHHHHHHHHHHHhhcccCh-HHHhhcHHHHHHhhcCCCCchHHHHHHH
Q 009975 400 EFGPE---WAMQHITPQVLEMIN-----NPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDRVPNIKFNVAK 470 (521)
Q Consensus 400 ~~~~~---~~~~~l~~~l~~~l~-----~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~l~d~~~~VR~~a~~ 470 (521)
....+ .+...++|.|..+.. |++..+|.++++++|...+.+.. ..+.+.+++.++..+.|+++.|..+|+.
T Consensus 483 ~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~ 562 (1023)
T 4hat_C 483 TMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACD 562 (1023)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 76543 344567777777665 46678899999999998875432 3357788889999999999999999999
Q ss_pred HHHHHHhhhchHH----------HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975 471 VLQSLIPIVDQSM----------VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 519 (521)
Q Consensus 471 ~l~~~~~~~~~~~----------~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~ 519 (521)
++..+++..+... +.+.++..+.....+-+.+-+..+.+|++.+.+-++
T Consensus 563 al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 563 TFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 9999998765433 334555555555566677777888888887776554
No 64
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.55 E-value=8.4e-13 Score=118.14 Aligned_cols=229 Identities=13% Similarity=0.081 Sum_probs=134.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHh
Q 009975 216 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ 292 (521)
Q Consensus 216 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~ 292 (521)
+|.+.++++++++++|..|+.+|..++...+.. ......++.+.+++.++++.+|..++.+++.++..-...
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----- 78 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA----- 78 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH-----
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH-----
Confidence 566666666666666666666666665533211 011124455555555555555555555555554321100
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hhhHH
Q 009975 293 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDD 369 (521)
Q Consensus 293 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~ 369 (521)
.........+|.+.+++.++++.+|..++.++..++..... .....
T Consensus 79 -------------------------------~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 127 (252)
T 4hxt_A 79 -------------------------------IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA 127 (252)
T ss_dssp -------------------------------HHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred -------------------------------HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 00011123444444444444455555555444444421110 11122
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC---HHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh---H
Q 009975 370 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---E 443 (521)
Q Consensus 370 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~ 443 (521)
..+|.+..+++++++.+|..++.+++.++.... ........+|.+..++.++++.+|..++.+++.++..... .
T Consensus 128 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 207 (252)
T 4hxt_A 128 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKA 207 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 356777777888888888888888887764221 1122356788888888888899999999999998862211 1
Q ss_pred HHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc
Q 009975 444 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 480 (521)
Q Consensus 444 ~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~ 480 (521)
......++.+..++.++++.+|..|+.+|+.+....+
T Consensus 208 l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 208 IVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 1235678899999999999999999999999887543
No 65
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.55 E-value=3.4e-13 Score=119.01 Aligned_cols=188 Identities=12% Similarity=0.174 Sum_probs=156.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHH-HHhhhCh-----hhhHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHhC-H
Q 009975 332 LLPAIVELAEDRHWRVRLAIIEYIPL-LASQLGV-----GFFDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFG-P 403 (521)
Q Consensus 332 ~~~~l~~~~~~~~~~vr~~~~~~l~~-l~~~~~~-----~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~-~ 403 (521)
+-+.+.+.+++++|.-|.+++..+.. +.+..+. ..+ ..++..+...+ +|.+..||..|+.+++.++..++ .
T Consensus 17 l~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~ 95 (249)
T 2qk1_A 17 LPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTP 95 (249)
T ss_dssp SCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred CChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccc
Confidence 33345666789999999999999998 8754322 122 45688888888 89999999999999999999887 4
Q ss_pred H---HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH---HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975 404 E---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 404 ~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~---~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~ 477 (521)
. .+...++|.+.+.++|+...+|.++..++..++...++.. +.+.+++.++..++++++.+|..++.+++.++.
T Consensus 96 ~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 96 GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 3 3456789999999999999999999999999998764321 245789999999999999999999999999998
Q ss_pred hhch--H---HHH-hhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhcc
Q 009975 478 IVDQ--S---MVE-KTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 520 (521)
Q Consensus 478 ~~~~--~---~~~-~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~~ 520 (521)
..+. . .+. +.+.|.+.++++|++++||..|..+++.+...+|.
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 7663 2 345 78999999999999999999999999999998874
No 66
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.52 E-value=1.2e-12 Score=117.11 Aligned_cols=225 Identities=14% Similarity=0.101 Sum_probs=152.2
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH---HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh---
Q 009975 213 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--- 286 (521)
Q Consensus 213 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~--- 286 (521)
..-++.+.+.++++++++|..|+.+|..+...-.+. ......+|.+.+++.++++.+|..++.+++.++.....
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 445788888888888899999999987655542111 12234778888889888899999999999988753221
Q ss_pred HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchh---hHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhC
Q 009975 287 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 363 (521)
Q Consensus 287 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~ 363 (521)
.......+|.+..+++++++.+|..++.++..+...-... ......+|.+.+++.++++.+|..++.++..++....
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 1122357899999999999999999999999887543321 2234678888888888888888888888887775322
Q ss_pred hh---hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 009975 364 VG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLA 437 (521)
Q Consensus 364 ~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~ 437 (521)
.. ......+|.+..++.++++.+|..|+.+|+.++..... .......++.+..++.+++..+|..|+.+++.++
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 11 11234567777777777777777777777777531100 1112335556666666666666666666665554
No 67
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.51 E-value=2.3e-09 Score=108.96 Aligned_cols=290 Identities=12% Similarity=0.057 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC---CChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCC--
Q 009975 191 VRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR---DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS-- 265 (521)
Q Consensus 191 vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~-- 265 (521)
.|..++..+|-|-. + ....-+..+...+. .+++.+|..|+.+++.+....+.+ . +..+...+.+.
T Consensus 374 ~k~sA~aSLGlIh~--g---~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-~----~~lL~~~L~~~~~ 443 (963)
T 4ady_A 374 AKFTATASLGVIHK--G---NLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-T----TDYLKNIIVENSG 443 (963)
T ss_dssp HHHHHHHHHHHHTS--S---CTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-H----HHHHHHHHHHHSS
T ss_pred HHHHHHHHhhhhcc--C---chHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-H----HHHHHHHHcCccc
Confidence 45666666765432 1 11345777777776 567899999999999988876653 2 33333333333
Q ss_pred ------cHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHH
Q 009975 266 ------SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 339 (521)
Q Consensus 266 ------~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~ 339 (521)
+..+|..++-.+|.+.-..+++ ++.+.+...+.|++..+|..|+.+++.+.-..|.....+.++..+
T Consensus 444 ~~~~~~~~~ir~gAaLGLGla~~GS~~e----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~--- 516 (963)
T 4ady_A 444 TSGDEDVDVLLHGASLGIGLAAMGSANI----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYS--- 516 (963)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSTTCCCH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH---
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH---
Confidence 3789999999999876544443 455666667777778888899999998754444333323333333
Q ss_pred hcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhc
Q 009975 340 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN 419 (521)
Q Consensus 340 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 419 (521)
.++.+..+|..++..|+.+ .+|.+...+.++. .+..+.++-+|.+++.+++.-+...|.....+.++.. +.+
T Consensus 517 ~e~~~e~vrR~aalgLGll--~~g~~e~~~~li~---~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~---~~~ 588 (963)
T 4ady_A 517 QETQHGNITRGLAVGLALI--NYGRQELADDLIT---KMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHV---AVS 588 (963)
T ss_dssp HHCSCHHHHHHHHHHHHHH--TTTCGGGGHHHHH---HHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHH---HHH
T ss_pred hccCcHHHHHHHHHHHHhh--hCCChHHHHHHHH---HHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH---hcc
Confidence 3566778898888888776 3444433333333 3345789999999999988776666654333333332 346
Q ss_pred CcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHh-hcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCC
Q 009975 420 NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVIN-ASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTED 498 (521)
Q Consensus 420 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~-~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D 498 (521)
|++..+|..|+.+++.+.. |.+ ...+.++. +.++.++.||..++.+++.+...-+. ..++..|.++.+|
T Consensus 589 d~~d~VRraAViaLGlI~~--g~~----e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D 658 (963)
T 4ady_A 589 DSNDDVRRAAVIALGFVLL--RDY----TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKD 658 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTS--SSC----SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHhhcc--CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccC
Confidence 7788899999999998864 222 23444554 55678999999999999998754332 4566788888999
Q ss_pred CCccHHHHHHHHHHHHH
Q 009975 499 PDVDVRFFATQAIQSID 515 (521)
Q Consensus 499 ~~~~vr~~a~~al~~l~ 515 (521)
+|..||..|..|++.+.
T Consensus 659 ~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 659 PVDFVRQAAMIALSMIL 675 (963)
T ss_dssp SSHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999998765
No 68
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.49 E-value=3e-11 Score=122.63 Aligned_cols=309 Identities=14% Similarity=0.060 Sum_probs=211.4
Q ss_pred hHHHHHHhcC---CCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCh--------HHHHHHHHHhHHHHHhh
Q 009975 176 ILPVIVNFSQ---DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE--------AEVRIAAAGKVTKFCRI 244 (521)
Q Consensus 176 l~~~l~~~~~---d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~--------~~vr~~a~~~l~~l~~~ 244 (521)
.+..+...+. +.++.+|..++.++|-+....+ .+.+..+...+.+++ +.+|.+|+-.|+.+.--
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~-----~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~G 467 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG-----RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMG 467 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT-----HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcC
Confidence 4555555554 5678999999999997654322 135566666665443 67999999999886544
Q ss_pred hCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc
Q 009975 245 LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 324 (521)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 324 (521)
.+.+. +.+.+...+.|.+..+|..++.++|.+.-.-|.....+.++..+. .+.+..+|+.++.+|+.+. +|
T Consensus 468 S~~ee----v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~--~g 538 (963)
T 4ady_A 468 SANIE----VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQHGNITRGLAVGLALIN--YG 538 (963)
T ss_dssp CCCHH----HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHT--TT
T ss_pred CCCHH----HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhh--CC
Confidence 44444 345555555666677888899899887544455444455555443 5778899999999999774 23
Q ss_pred hhhHhhhHHHHH-HHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH
Q 009975 325 IDLLSQSLLPAI-VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 403 (521)
Q Consensus 325 ~~~~~~~~~~~l-~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 403 (521)
.+ ...+.+ ..+..+.+|.+|..++.+++.-....|.....+ .++..+.+|.+..||++|+.+|+.+.- |.
T Consensus 539 ~~----e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq---~LL~~~~~d~~d~VRraAViaLGlI~~--g~ 609 (963)
T 4ady_A 539 RQ----ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK---RLLHVAVSDSNDDVRRAAVIALGFVLL--RD 609 (963)
T ss_dssp CG----GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHH---HHHHHHHHCSCHHHHHHHHHHHHHHTS--SS
T ss_pred Ch----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHH---HHHHHhccCCcHHHHHHHHHHHHhhcc--CC
Confidence 22 223333 334567899999999888876665666643333 344445578899999999999987642 32
Q ss_pred HHHHhhhHHHHHh-hhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH
Q 009975 404 EWAMQHITPQVLE-MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 482 (521)
Q Consensus 404 ~~~~~~l~~~l~~-~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~ 482 (521)
...++.+.. +..+.++.+|..++.++|.+...-+ ...++..|..+..|++..||++|+.+|+.+.....+.
T Consensus 610 ----~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~----~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 610 ----YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG----LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp ----CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC----CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC----cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccc
Confidence 235666666 4567899999999999999975333 2457778888899999999999999999998643322
Q ss_pred H--HHhhHHHHHHHhcCC--CCccHHHHHHHHHHHHH
Q 009975 483 M--VEKTIRPCLVELTED--PDVDVRFFATQAIQSID 515 (521)
Q Consensus 483 ~--~~~~~~~~l~~l~~D--~~~~vr~~a~~al~~l~ 515 (521)
. -...++..|.+...| .|.++|+.+.-|.+-+.
T Consensus 682 ~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 682 LNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp TCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 0 123344444444444 67889999999888663
No 69
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.1e-10 Score=116.21 Aligned_cols=400 Identities=12% Similarity=0.088 Sum_probs=248.5
Q ss_pred CchhHHHHHHHHHHHHHHhhcC-hhHHHHhHHHHHHHhhcCCCCcchhhhhhhhhhhcC--CCChHHHHHHHHHHHHhcC
Q 009975 31 VEETCVRDKAVESLCRIGSQMR-ESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP--SAPDILKTELRSIYTQLCQ 107 (521)
Q Consensus 31 ~~~~~vR~~a~~~l~~i~~~~~-~~~~~~~l~p~i~~~~~~~~~~~r~~~~~~~~~~~~--~~~~~~~~~l~~~l~~l~~ 107 (521)
.++..+..++++.+...|..=. .+.+.+..+|++.+..+++ .+|..+...+..++. ...+.....+.+.+.+.+.
T Consensus 267 ~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~~--~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~ 344 (778)
T 3opb_A 267 EQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNVE--DVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAIS 344 (778)
T ss_dssp SCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTSG--GGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhccH--HHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHh
Confidence 3445555666666665554321 2344567778888877653 456555544444332 2222345678888888887
Q ss_pred CCChHHHHHHHHhHHHHHHhhCc-hh--hHHHHHHHHHHhhcC-CChhHHHHHHHHHHHHhhhcChhh----hhhhhHHH
Q 009975 108 DDMPMVRRSAASNLGKFAATVEP-AH--LKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQD----CVAHILPV 179 (521)
Q Consensus 108 ~~~~~vr~~a~~~l~~l~~~~~~-~~--~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~ 179 (521)
+++...|+.|++.|..+...-.- +. ..+.+++.+.+++.+ ++..+-..+..++.++....+... ...++.++
T Consensus 345 ~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~ 424 (778)
T 3opb_A 345 RRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXX 424 (778)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC--------
T ss_pred cCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhh
Confidence 76666699999999988632110 11 224557777777774 566788889999999988754321 11222222
Q ss_pred HHHhc----CCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH--HHHHh
Q 009975 180 IVNFS----QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQH 253 (521)
Q Consensus 180 l~~~~----~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ 253 (521)
...-. .++++.-.. ..+..+.+ .......++|.+..+++.+++.+|..|+.+|..++..-... ...+-
T Consensus 425 A~~~~p~~~~~d~~~~~~---~~v~~~~~---~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqG 498 (778)
T 3opb_A 425 XXXXXPAADKVGAEKAAK---EDILLFNE---KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQG 498 (778)
T ss_dssp ----------CCTHHHHH---HHHHHHHH---HHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTT
T ss_pred ccccCcccCcccccccch---HHHHHHHH---HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 21110 001111111 11111111 11223568999999999999999999999999998753222 22344
Q ss_pred hhHHHHHhccCCcHH---HHHHHHHHHHccccccChHHHH-----HhHHHHHHHhhcC-CCh-------------HHHHH
Q 009975 254 ILPCVKELSSDSSQH---VRSALASVIMGMAPLLGKDATI-----EQLLPIFLSLLKD-EFP-------------DVRLN 311 (521)
Q Consensus 254 ~~~~l~~~~~d~~~~---vr~~~~~~l~~i~~~~~~~~~~-----~~l~~~l~~~l~d-~~~-------------~vr~~ 311 (521)
.++.+..++.+.+.. +|..|+.++.++.....+.... -..+|.+..++.. +.. --+..
T Consensus 499 al~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~fe 578 (778)
T 3opb_A 499 AVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYE 578 (778)
T ss_dssp HHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHH
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHH
Confidence 677788777666544 8999999999887443322211 2578899999882 221 12668
Q ss_pred HHHHHHHhhhhhc-------hhhHh-hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hhhH---HH---HHHH
Q 009975 312 IISKLDQVNQVIG-------IDLLS-QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFD---DK---LGAL 374 (521)
Q Consensus 312 a~~~l~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~---~~---l~~~ 374 (521)
|+.+|..++..-+ ...+. ...+|.+.+++.+.+..+|.++++++..++..-.. +.+. +. =++.
T Consensus 579 AL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~l 658 (778)
T 3opb_A 579 ALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNI 658 (778)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHH
Confidence 8888888877532 11222 25789999999989999999999999998864321 2221 11 2678
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHhCH--HHH-H-hhhHHHHHhhhcC--cchHHHHHHHHHHHHhhc
Q 009975 375 CMQWLQDKVYSIRDAAANNLKRLAEEFGP--EWA-M-QHITPQVLEMINN--PHYLYRMTILRAISLLAP 438 (521)
Q Consensus 375 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~-~-~~l~~~l~~~l~~--~~~~~r~~a~~~l~~l~~ 438 (521)
+..++...+.++|.+|..+++.+...... ..+ . ...++.+..++.+ ++..+|..++.++..++.
T Consensus 659 LV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 659 LVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 88889999999999999998887543221 111 1 2466677777777 788899999999888886
No 70
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.47 E-value=1.2e-11 Score=118.31 Aligned_cols=245 Identities=12% Similarity=0.009 Sum_probs=175.5
Q ss_pred HHHHHHHccccccC-hHH-HHHhHHHHHHHhhc-----------CCChHHHHHHHHHHHHhhhhhc--hhhH--hhhHHH
Q 009975 272 ALASVIMGMAPLLG-KDA-TIEQLLPIFLSLLK-----------DEFPDVRLNIISKLDQVNQVIG--IDLL--SQSLLP 334 (521)
Q Consensus 272 ~~~~~l~~i~~~~~-~~~-~~~~l~~~l~~~l~-----------d~~~~vr~~a~~~l~~~~~~~~--~~~~--~~~~~~ 334 (521)
.+++++++++..-. ++. .....++.+..++. +.++.++..|+.+|..++..-. +..+ ....+|
T Consensus 167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp 246 (458)
T 3nmz_A 167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 246 (458)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence 78888888864311 111 12346777777773 1346789999999999875432 1122 245699
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hh-hHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHHHHHh-C--HHHH
Q 009975 335 AIVELAEDRHWRVRLAIIEYIPLLASQLGV---GF-FDDKLGALCMQW-LQDKVYSIRDAAANNLKRLAEEF-G--PEWA 406 (521)
Q Consensus 335 ~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~-~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~-~--~~~~ 406 (521)
.+.+++.+++..++..++.+|..++..-+. .. .....+|.+..+ +...+..+++.++.++..+.... + ....
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~ 326 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 326 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 999999999999999999999888753111 11 123467888886 56678899999999999887632 1 1222
Q ss_pred -HhhhHHHHHhhhcCcch----HHHHHHHHHHHHhhcc--cChHH----HhhcHHHHHHhhcCCCCchHHHHHHHHHHHH
Q 009975 407 -MQHITPQVLEMINNPHY----LYRMTILRAISLLAPV--MGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSL 475 (521)
Q Consensus 407 -~~~l~~~l~~~l~~~~~----~~r~~a~~~l~~l~~~--~~~~~----~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~ 475 (521)
....+|.|..++.+++. .++..++.++..++.. .+.+. .....+|.++.++.+++..++..|+.+|..+
T Consensus 327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406 (458)
T ss_dssp HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 35678999998876543 4888999999988752 12221 2345789999999999999999999999999
Q ss_pred Hhhhch---HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975 476 IPIVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 476 ~~~~~~---~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~ 516 (521)
+..-.. .....-.+|.|..++...+.++|..|++||..|..
T Consensus 407 a~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 407 SARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp HSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 842111 12335678999999999999999999999999875
No 71
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.46 E-value=9.5e-10 Score=116.24 Aligned_cols=449 Identities=8% Similarity=0.007 Sum_probs=274.9
Q ss_pred cCchhHHHHHHHHHHHHHHhh----cChh---HHHHhHHHHHHHhhcCC-----CCcchhhhhhhhhhhcCCCChHHHHH
Q 009975 30 TVEETCVRDKAVESLCRIGSQ----MRES---DLVDWYIPLVKRLAAGE-----WFTARVSACGLFHIAYPSAPDILKTE 97 (521)
Q Consensus 30 ~~~~~~vR~~a~~~l~~i~~~----~~~~---~~~~~l~p~i~~~~~~~-----~~~~r~~~~~~~~~~~~~~~~~~~~~ 97 (521)
++.++.+|..|...|...++. ++++ .+++.++..+.+...++ ...++...+.++..++.+.=+..++.
T Consensus 59 ~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~ 138 (1023)
T 4hat_C 59 FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPE 138 (1023)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTT
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchH
Confidence 355789999999998877763 5554 46677787776655432 22334334444444443321223667
Q ss_pred HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc---h---------------hhHHHHHHHHHHhhcC-CChhHHHHHHH
Q 009975 98 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---A---------------HLKTDIMSIFEDLTQD-DQDSVRLLAVE 158 (521)
Q Consensus 98 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~---~---------------~~~~~l~~~l~~l~~d-~~~~vr~~a~~ 158 (521)
+++.+.++++. ++.....+...|..+.+.+.. + ...+.+.+++...+.+ .+..+...+.+
T Consensus 139 ~l~dL~~~l~~-~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~ 217 (1023)
T 4hat_C 139 FIPELIGSSSS-SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLE 217 (1023)
T ss_dssp HHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 77777777654 355566667777776665321 0 1124456666666543 45677888889
Q ss_pred HHHHHhhhcChhh-hhhhhHHHHH-HhcCCCChHHHHHHHHHHHHHHHH-h-CCC-cccc-------chHHHH-HHh---
Q 009975 159 GCAALGKLLEPQD-CVAHILPVIV-NFSQDKSWRVRYMVANQLYELCEA-V-GPE-PTRM-------DLVPAY-VRL--- 222 (521)
Q Consensus 159 ~l~~l~~~~~~~~-~~~~l~~~l~-~~~~d~~~~vR~~~~~~l~~i~~~-~-~~~-~~~~-------~l~~~l-~~~--- 222 (521)
++....+-++-+. ....+++.+. .++. ++..|..+++++..++.. . ++. ...+ .+++.+ ..+
T Consensus 218 ~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~ 295 (1023)
T 4hat_C 218 SLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPV 295 (1023)
T ss_dssp HHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8888877665442 2345777777 6664 567999999999988752 1 111 1111 111211 110
Q ss_pred ----------cCCChHHHHHHHHHhHHHHHhhhC------H--HHHHHhhhHHHHHhccCCcHHHHHHHHHHHHcccccc
Q 009975 223 ----------LRDNEAEVRIAAAGKVTKFCRILN------P--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 284 (521)
Q Consensus 223 ----------l~d~~~~vr~~a~~~l~~l~~~~~------~--~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~ 284 (521)
..+++.+....-...+..+++... + ..........+......+++.+-..+......+...+
T Consensus 296 ~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l 375 (1023)
T 4hat_C 296 TADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADL 375 (1023)
T ss_dssp TCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Confidence 123445555555555555555321 1 1122222335555556667766555555554444321
Q ss_pred C-----h---HHHHHhHHHHHHHhhcCCC-------------------hH--HH-HHHHHHHHHhhhhhchhhHhhhHHH
Q 009975 285 G-----K---DATIEQLLPIFLSLLKDEF-------------------PD--VR-LNIISKLDQVNQVIGIDLLSQSLLP 334 (521)
Q Consensus 285 ~-----~---~~~~~~l~~~l~~~l~d~~-------------------~~--vr-~~a~~~l~~~~~~~~~~~~~~~~~~ 334 (521)
- . ......+++.+...+.=++ .+ .. +..-.+|..+....+. ...+.+++
T Consensus 376 ~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~-~~~~~~~~ 454 (1023)
T 4hat_C 376 FYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI-DTEEIMIS 454 (1023)
T ss_dssp TTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHH-HHHHHHHH
T ss_pred HhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHH-HHHHHHHH
Confidence 1 1 1223456666665544221 00 11 1111444444443443 33366777
Q ss_pred HHHHHhcC--CChHHHHHHHHHhHHHHhhhChh---hhHHHHHHHHHHHcC-----CCcHHHHHHHHHHHHHHHHHhCHH
Q 009975 335 AIVELAED--RHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQ-----DKVYSIRDAAANNLKRLAEEFGPE 404 (521)
Q Consensus 335 ~l~~~~~~--~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~ 404 (521)
.+.+.+.+ .+|+.|.+++.+++.++..+.++ .+.+.++|.++.++. |+...||..++.++|.+.+.+...
T Consensus 455 ~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~ 534 (1023)
T 4hat_C 455 KLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH 534 (1023)
T ss_dssp HHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 77665543 68999999999999999887654 455677888888776 566778889999999988766322
Q ss_pred -HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH----------HhhcHHHHHHhhcCCCCchHHHHHHHHHH
Q 009975 405 -WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----------TCSRLLPVVINASKDRVPNIKFNVAKVLQ 473 (521)
Q Consensus 405 -~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----------~~~~il~~l~~~l~d~~~~VR~~a~~~l~ 473 (521)
.+.+.++..+.+.+.++++++..+|+.++..+++.++... +.+.++..+.....+-.+.-+..+.++++
T Consensus 535 ~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~ 614 (1023)
T 4hat_C 535 WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACG 614 (1023)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2456677788888888999999999999999998777543 44556666666666667778889999999
Q ss_pred HHHhhhchH
Q 009975 474 SLIPIVDQS 482 (521)
Q Consensus 474 ~~~~~~~~~ 482 (521)
.++...+..
T Consensus 615 ~vi~~~~~~ 623 (1023)
T 4hat_C 615 IIISEERSV 623 (1023)
T ss_dssp HHHTTCCSH
T ss_pred HHHHhCCCH
Confidence 999987744
No 72
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.45 E-value=7.5e-11 Score=112.84 Aligned_cols=245 Identities=12% Similarity=0.039 Sum_probs=174.1
Q ss_pred HHHHhHHHHHhhhCH-HHH-HHhhhHHHHHhcc-----------CCcHHHHHHHHHHHHccccccCh--HHH--HHhHHH
Q 009975 233 AAAGKVTKFCRILNP-ELA-IQHILPCVKELSS-----------DSSQHVRSALASVIMGMAPLLGK--DAT--IEQLLP 295 (521)
Q Consensus 233 ~a~~~l~~l~~~~~~-~~~-~~~~~~~l~~~~~-----------d~~~~vr~~~~~~l~~i~~~~~~--~~~--~~~l~~ 295 (521)
.|+.+|..++..-.. ..+ ..-.++.+..++. +.+..++..+++++..++..-.. ..+ ....+|
T Consensus 167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp 246 (458)
T 3nmz_A 167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 246 (458)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence 677778777543111 111 1224555555552 13567899999999998854321 122 134699
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhhhhhc---hhh-HhhhHHHHHHHH-hcCCChHHHHHHHHHhHHHHhhhCh--hhh-
Q 009975 296 IFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDL-LSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGV--GFF- 367 (521)
Q Consensus 296 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~-~~~~~~~~l~~~-~~~~~~~vr~~~~~~l~~l~~~~~~--~~~- 367 (521)
.+..++.+++++++..|+.+|..+...-+ ... .....+|.+.++ ..+.+..++..++.++..++..... ..+
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~ 326 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 326 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 99999999999999999999999865311 112 224678888886 5667889999999999888874321 122
Q ss_pred -HHHHHHHHHHHcCCCcH----HHHHHHHHHHHHHHHH--hCHH----HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHh
Q 009975 368 -DDKLGALCMQWLQDKVY----SIRDAAANNLKRLAEE--FGPE----WAMQHITPQVLEMINNPHYLYRMTILRAISLL 436 (521)
Q Consensus 368 -~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~l~~~--~~~~----~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l 436 (521)
....+|.+..++.+... .++..|+.+|..+... .+.+ ......+|.|..++.+++..++..|+.+++.+
T Consensus 327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406 (458)
T ss_dssp HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 24578899999886544 5889899999888753 1222 12345789999999999999999999999999
Q ss_pred hcccChH----HHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 009975 437 APVMGSE----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 478 (521)
Q Consensus 437 ~~~~~~~----~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~ 478 (521)
+.. ..+ ......+|.+..++..+++.+|..|+.+|..+...
T Consensus 407 a~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 407 SAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 842 121 23356789999999999999999999999999875
No 73
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.43 E-value=1.9e-14 Score=124.83 Aligned_cols=185 Identities=20% Similarity=0.269 Sum_probs=93.6
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHh
Q 009975 182 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL 261 (521)
Q Consensus 182 ~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ 261 (521)
.++.|+++.||..++..+. ...+..+++|+++.||..++..++ . +.+..+
T Consensus 57 ~ll~d~~~~VR~~AA~~l~---------------~~~l~~L~~D~~~~VR~~aA~~L~-------~--------~~L~~l 106 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSP---------------VEALTPLIRDSDEVVRRAVAYRLP-------R--------EQLSAL 106 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSC---------------GGGGGGGTTCSSHHHHHHHHTTSC-------S--------GGGGGT
T ss_pred HHhcCCCHHHHHHHHHhCC---------------HHHHHHHccCcCHHHHHHHHHHCC-------H--------HHHHHH
Confidence 3456666666666665321 122455566666666666665421 1 234555
Q ss_pred ccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhc
Q 009975 262 SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 341 (521)
Q Consensus 262 ~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (521)
++|+++.||..++..+ +. +.+..+++|+++.||..++..+ +. +.+..+.+
T Consensus 107 l~D~d~~VR~~aA~~l-------~~--------~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l~~ 156 (244)
T 1lrv_A 107 MFDEDREVRITVADRL-------PL--------EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFMR 156 (244)
T ss_dssp TTCSCHHHHHHHHHHS-------CT--------GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTTT
T ss_pred HcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHHHc
Confidence 6666666666665532 10 1233445666666666665532 11 11223455
Q ss_pred CCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCc
Q 009975 342 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP 421 (521)
Q Consensus 342 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~ 421 (521)
|++|.||..++..+ +. +.+..+++|+++.||.+++..+ + .+.+..+++|+
T Consensus 157 D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l-------~--------~~~L~~Ll~D~ 206 (244)
T 1lrv_A 157 DEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRL-------R--------GDDLLELLHDP 206 (244)
T ss_dssp CSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHC-------C--------GGGGGGGGGCS
T ss_pred CCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhC-------C--------HHHHHHHHcCC
Confidence 66666666655531 11 1233455666666666655432 1 12344455666
Q ss_pred chHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHH
Q 009975 422 HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVL 472 (521)
Q Consensus 422 ~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l 472 (521)
+|.+|..++..++ .+.+..+ .|+++.||.++...|
T Consensus 207 d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 207 DWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp SHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred CHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 6666666665532 1333334 666666666655443
No 74
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.42 E-value=2.1e-14 Score=124.53 Aligned_cols=188 Identities=21% Similarity=0.216 Sum_probs=127.1
Q ss_pred HHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHH
Q 009975 102 YTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV 181 (521)
Q Consensus 102 l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 181 (521)
+..+++|+++.||..++..+ + ...+..+.+|+++.||..+...+ +. +.+.
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l-------~--------~~~l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~ 104 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYS-------P--------VEALTPLIRDSDEVVRRAVAYRL-------PR--------EQLS 104 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS-------C--------GGGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGG
T ss_pred HHHHhcCCCHHHHHHHHHhC-------C--------HHHHHHHccCcCHHHHHHHHHHC-------CH--------HHHH
Confidence 34667888899998888754 1 12356778888888888887642 21 2456
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHh
Q 009975 182 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL 261 (521)
Q Consensus 182 ~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ 261 (521)
.+++|+++.||..++..+ + . +.+..+++|+++.||..++..+ + .+.+..+
T Consensus 105 ~ll~D~d~~VR~~aA~~l-------~-----~---~~L~~L~~D~d~~VR~~aA~~l-------~--------~~~l~~l 154 (244)
T 1lrv_A 105 ALMFDEDREVRITVADRL-------P-----L---EQLEQMAADRDYLVRAYVVQRI-------P--------PGRLFRF 154 (244)
T ss_dssp GTTTCSCHHHHHHHHHHS-------C-----T---GGGGGGTTCSSHHHHHHHHHHS-------C--------GGGGGGT
T ss_pred HHHcCCCHHHHHHHHHhC-------C-----H---HHHHHHHcCCCHHHHHHHHHhc-------C--------HHHHHHH
Confidence 778888888888888743 1 1 2355667888888888887632 2 1344567
Q ss_pred ccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhc
Q 009975 262 SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 341 (521)
Q Consensus 262 ~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (521)
.+|+++.||..++..+ +. +.+..+++|+++.||..++..+ +. +.+..+.+
T Consensus 155 ~~D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~ 204 (244)
T 1lrv_A 155 MRDEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLH 204 (244)
T ss_dssp TTCSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGG
T ss_pred HcCCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHc
Confidence 7888888888887651 11 2344577888888888888763 11 23455678
Q ss_pred CCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 009975 342 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK 395 (521)
Q Consensus 342 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 395 (521)
|++|.||..++..++ .+.+..+ +|+++.||.++...|+
T Consensus 205 D~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 205 DPDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp CSSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred CCCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 888888888887754 1344445 8888888888776554
No 75
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.41 E-value=1.6e-11 Score=106.31 Aligned_cols=187 Identities=15% Similarity=0.107 Sum_probs=133.8
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC---H
Q 009975 330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---P 403 (521)
Q Consensus 330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~ 403 (521)
+...|.+..++.++++.+|..++.++..++..-.. .......+|.+..+++++++.+|..|+.+++.++.... .
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 34455555666666666666666666665532111 11223467888888888888888888888888763211 1
Q ss_pred HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh---HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc
Q 009975 404 EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 480 (521)
Q Consensus 404 ~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~ 480 (521)
.......+|.+..++.+++..+|..++.+++.++..... .......+|.++.++.++++.+|..++.+|..++....
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 123355789999999999999999999999999863221 12345689999999999999999999999999987522
Q ss_pred h---HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975 481 Q---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 481 ~---~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~ 516 (521)
. .......+|.|.+++.+++++||..|.+++..+.+
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 2 12335678999999999999999999999998864
No 76
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.41 E-value=6.5e-10 Score=87.58 Aligned_cols=216 Identities=17% Similarity=0.152 Sum_probs=165.5
Q ss_pred HHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHH-hcCCChHHHHHHHHHhHHHHhhhChhhhH
Q 009975 290 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGFFD 368 (521)
Q Consensus 290 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~vr~~~~~~l~~l~~~~~~~~~~ 368 (521)
.+.++..+..++.|+-+-|+++|+..+..+..... + +.+.++..+.-+ .++..-..-..++..++.+++.-+. ..
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~-e-l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe--~v 105 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE-D-LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--LV 105 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG-G-GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH--HH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH-H-HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH--HH
Confidence 35677888889999999999999999998887544 1 113333333333 4667767777888888888876332 24
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhc
Q 009975 369 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSR 448 (521)
Q Consensus 369 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~ 448 (521)
..++|.++....=.++..|.....+|+.+..... .....++..+..++.++|..-|.+++.+++.++.. ...+...
T Consensus 106 ~~vVp~lfanyrigd~kikIn~~yaLeeIaranP--~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen--~~~yv~P 181 (253)
T 2db0_A 106 KSMIPVLFANYRIGDEKTKINVSYALEEIAKANP--MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN--SFKYVNP 181 (253)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT--THHHHGG
T ss_pred HhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh--HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc--CccccCc
Confidence 6689999988888899999999999999987642 23455777788899999999999999999998762 2335678
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 009975 449 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 449 il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~ 516 (521)
++|.++.+|.|.+.-||.+|.++|..++..- +.+...+...+.+ .+|++..|......++..+.-
T Consensus 182 fLprL~aLL~D~deiVRaSaVEtL~~lA~~n--pklRkii~~kl~e-~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 182 FLPRIINLLHDGDEIVRASAVEALVHLATLN--DKLRKVVIKRLEE-LNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC--HHHHHHHHHHHHH-CCCSCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHcCcchhhhHHHHHHHHHHHHcC--HHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998752 2244444444444 599999999999999988754
No 77
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.40 E-value=6.7e-11 Score=121.68 Aligned_cols=261 Identities=14% Similarity=0.198 Sum_probs=205.7
Q ss_pred hhhHHHHHhccCCcHHHHHHHHHHHHccccccCh----HHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhH
Q 009975 253 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 328 (521)
Q Consensus 253 ~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 328 (521)
.+...+.+.+.++... +.++..+..++...+. +.+.-.++|.++..+.|....||.+|..+...+...+.++..
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~ 131 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI 131 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 4666777777776555 7888888888866643 333345689999999999999999999999999999998887
Q ss_pred hhhHHHHHHHHhcCC-ChHHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHH
Q 009975 329 SQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 405 (521)
Q Consensus 329 ~~~~~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 405 (521)
..++|.+...+.+. .|+.+..++..+..+++..+.. ...+.++|.+...+.|..++|..+|..++..++..+++..
T Consensus 132 -~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d 210 (986)
T 2iw3_A 132 -KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD 210 (986)
T ss_dssp -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT
T ss_pred -HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc
Confidence 88899998877654 6999999999999999876432 2357799999999999999999999999999998887654
Q ss_pred HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhh--cccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch--
Q 009975 406 AMQHITPQVLEMINNPHYLYRMTILRAISLLA--PVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-- 481 (521)
Q Consensus 406 ~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~--~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~-- 481 (521)
.+..+|.|.+.+.+|+. +- .++..++... .... .....-+.|.+.+.|.++...++..++-.+.+|++-+..
T Consensus 211 -~~~~~~~~~~~~~~p~~-~~-~~~~~l~~~tfv~~v~-~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~ 286 (986)
T 2iw3_A 211 -IERFIPSLIQCIADPTE-VP-ETVHLLGATTFVAEVT-PATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQ 286 (986)
T ss_dssp -TGGGHHHHHHHHHCTTH-HH-HHHHHHTTCCCCSCCC-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHH
T ss_pred -hhhhHHHHHHHhcChhh-hH-HHHHHhhcCeeEeeec-chhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHH
Confidence 35689999999988843 22 2233332211 1111 223566889999999999999999999999999987754
Q ss_pred --HHHHhhHHHHHHHh-cCCCCccHHHHHHHHHHHHHHhhcc
Q 009975 482 --SMVEKTIRPCLVEL-TEDPDVDVRFFATQAIQSIDHVMMS 520 (521)
Q Consensus 482 --~~~~~~~~~~l~~l-~~D~~~~vr~~a~~al~~l~~~~~~ 520 (521)
..|.+.++|.+.+. -+-.+|++|..+.+|+.+|.+..+.
T Consensus 287 ~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 287 VIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 35678899999985 4457999999999999999887653
No 78
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.34 E-value=6.9e-11 Score=102.34 Aligned_cols=186 Identities=16% Similarity=0.116 Sum_probs=125.1
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhch---hhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---h
Q 009975 292 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---G 365 (521)
Q Consensus 292 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~ 365 (521)
...|.+..+++++++++|..|+.++..++..-.. .......+|.+.+++.++++.+|..++.+++.++..... .
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4456666677777777777777777666532111 112235667777777777777777777777666532111 1
Q ss_pred hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh
Q 009975 366 FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 442 (521)
Q Consensus 366 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~ 442 (521)
......+|.+..+++++++.+|..|+.+++.++..... .......+|.|.+++.+++..+|..++.+++.++.....
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 171 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH
Confidence 12233577888888888888888888888888642111 112356788888888888899999999999998863211
Q ss_pred ---HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975 443 ---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 443 ---~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~ 477 (521)
.......++.+..++.++++.+|..|+.+|..++.
T Consensus 172 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 172 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 11234678899999999999999999999988753
No 79
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.25 E-value=2.7e-08 Score=108.02 Aligned_cols=489 Identities=12% Similarity=0.047 Sum_probs=271.2
Q ss_pred hHHhhhhHHhhhhcC-chhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhh-cCCCCcchhhhhhhhhhh----cCCC
Q 009975 17 HAHVLLPPLETLCTV-EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA-AGEWFTARVSACGLFHIA----YPSA 90 (521)
Q Consensus 17 ~~~~l~~~l~~l~~~-~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~-~~~~~~~r~~~~~~~~~~----~~~~ 90 (521)
....+...+....+. .+.++|+.|.+.|..+-+. + + .+..+. ..+. .+.+..+|..+...+... +..+
T Consensus 9 ~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-p-~-~~~~~~---~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l 82 (1204)
T 3a6p_A 9 LCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK-C-P-ICVPCG---LRLAEKTQVAIVRHFGLQILEHVVKFRWNGM 82 (1204)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-C-T-THHHHH---HHHTSTTSCHHHHHHHHHHHHHHHHHSGGGS
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC-c-h-HHHHHH---HHHHccCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 444566666665553 4778899999998886543 1 1 111222 2223 344567787776555433 3456
Q ss_pred ChHHHHHHHHHHHHhcC-------CCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 009975 91 PDILKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAAL 163 (521)
Q Consensus 91 ~~~~~~~l~~~l~~l~~-------~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l 163 (521)
+++.+..+...+..++. +..+.||..++.++..+++..-+ ..|+.+++.+.++.+. +...+..+..+|..+
T Consensus 83 ~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L 160 (1204)
T 3a6p_A 83 SRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVMFILLRL 160 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 76655555555544322 14689999999999999987543 4588888888888765 456688888888888
Q ss_pred hhhcCh-----hhh-----------hhhhHHHHHHhcCC-------------------CChHHHHHHHHHHHHHHHHhCC
Q 009975 164 GKLLEP-----QDC-----------VAHILPVIVNFSQD-------------------KSWRVRYMVANQLYELCEAVGP 208 (521)
Q Consensus 164 ~~~~~~-----~~~-----------~~~l~~~l~~~~~d-------------------~~~~vR~~~~~~l~~i~~~~~~ 208 (521)
.+.+.. ... .+.+++.+...+++ .+..++..+.+++..+....+.
T Consensus 161 ~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~ 240 (1204)
T 3a6p_A 161 AEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM 240 (1204)
T ss_dssp HHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH
T ss_pred HHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH
Confidence 764211 000 11344444433322 1234555566655544332221
Q ss_pred Ccc---ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC-HHHHH---Hhh----hHHHHHhc--------cCCcHHH
Q 009975 209 EPT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-PELAI---QHI----LPCVKELS--------SDSSQHV 269 (521)
Q Consensus 209 ~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~~---~~~----~~~l~~~~--------~d~~~~v 269 (521)
... ...+++.+..++.+ +.+|.+|+++|..+..... ++... ..+ +..+.... .+.+..+
T Consensus 241 ~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~ 318 (1204)
T 3a6p_A 241 SHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVF 318 (1204)
T ss_dssp HHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHH
T ss_pred HHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHH
Confidence 111 12478888888776 4699999999999987543 22211 111 11122221 2223445
Q ss_pred HHHHHHHHHccccccC----------hHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc--h-hh---HhhhHH
Q 009975 270 RSALASVIMGMAPLLG----------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--I-DL---LSQSLL 333 (521)
Q Consensus 270 r~~~~~~l~~i~~~~~----------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~--~-~~---~~~~~~ 333 (521)
++..++.+..++..+- .......+++.++.+..+++..+-..++..+..+.+... . +. +...++
T Consensus 319 ~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll 398 (1204)
T 3a6p_A 319 LKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYL 398 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 5555555554432111 112245788999999999988888888887777665432 1 11 123333
Q ss_pred HHHHHHh------cC---------------------CChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCC-----
Q 009975 334 PAIVELA------ED---------------------RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD----- 381 (521)
Q Consensus 334 ~~l~~~~------~~---------------------~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d----- 381 (521)
+.+...+ .+ ..+..|......+..++...+.. ..+.+.+.+...+.+
T Consensus 399 ~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~-~l~~v~~~l~~~l~~~l~~~ 477 (1204)
T 3a6p_A 399 RASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKT-SFQMAGEWLKYQLSTFLDAG 477 (1204)
T ss_dssp HHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHTCC----
T ss_pred HHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHhhhhccc
Confidence 3331101 10 01345666666666666544332 233444544333322
Q ss_pred --------------------CcHHHHHHHHHHHHHHHHHh---C-HHHHHhhhHHHHHhhh---cCcchHHHHHHHHHHH
Q 009975 382 --------------------KVYSIRDAAANNLKRLAEEF---G-PEWAMQHITPQVLEMI---NNPHYLYRMTILRAIS 434 (521)
Q Consensus 382 --------------------~~~~vr~~a~~~l~~l~~~~---~-~~~~~~~l~~~l~~~l---~~~~~~~r~~a~~~l~ 434 (521)
+.+...++....++.+...+ . .+.....+++.+...+ +..++.+|.+.+.+++
T Consensus 478 ~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~ 557 (1204)
T 3a6p_A 478 SVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVS 557 (1204)
T ss_dssp -------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 22333445444454444433 1 1111112455555542 3457889999999999
Q ss_pred HhhcccCh-HHHhhcHHHHHHhhcCC------------CCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcC--
Q 009975 435 LLAPVMGS-EITCSRLLPVVINASKD------------RVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTE-- 497 (521)
Q Consensus 435 ~l~~~~~~-~~~~~~il~~l~~~l~d------------~~~~VR~~a~~~l~~~~~~~~~~--~~~~~~~~~l~~l~~-- 497 (521)
.+...+.. ..+.+.+++.++..+.+ .+..||.+|+.++..++...+.. .+.+.+...+..+..
T Consensus 558 ~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~ 637 (1204)
T 3a6p_A 558 ALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNE 637 (1204)
T ss_dssp HHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHST
T ss_pred HHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc
Confidence 88875442 33566777777777665 24479999999999999876543 122444444444332
Q ss_pred C-CCccHHHHHHHHHHHHHH
Q 009975 498 D-PDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 498 D-~~~~vr~~a~~al~~l~~ 516 (521)
. -+..=+.....++..+..
T Consensus 638 ~~l~~~e~~~L~eal~~ia~ 657 (1204)
T 3a6p_A 638 LLLTQMEKCALMEALVLISN 657 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHG
T ss_pred ccccHHHHHHHHHHHHHHhc
Confidence 1 224445555666665543
No 80
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.25 E-value=1.2e-09 Score=95.02 Aligned_cols=180 Identities=16% Similarity=0.108 Sum_probs=136.4
Q ss_pred HhhcCCChHHHHHHHHHHHHhhhhhchhhH--hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhh-----h-HHH
Q 009975 299 SLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF-----F-DDK 370 (521)
Q Consensus 299 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~-----~-~~~ 370 (521)
..+-+.+...|..++..+....+....+.+ .+.+++.+.-.+.|.|..+-..+++.+..+...++... + ...
T Consensus 53 ~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~ 132 (266)
T 2of3_A 53 SQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSA 132 (266)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 344455667777777766665543222111 01123333323358899998899999888877665421 1 356
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHH
Q 009975 371 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL 450 (521)
Q Consensus 371 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il 450 (521)
++|.++.-+.|+...||..+-..+..+...+++ ..+++.+.+.+++.||+.|..++..++.+.+..|.. ....+
T Consensus 133 ~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~~~l 206 (266)
T 2of3_A 133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--PLKSL 206 (266)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GGGGG
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--ccccc
Confidence 899999999999999999999999888877653 457788888889999999999999999999988876 34567
Q ss_pred ---HHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHH
Q 009975 451 ---PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV 484 (521)
Q Consensus 451 ---~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~ 484 (521)
|.+..+++|++..||.+|++++..++...|...+
T Consensus 207 ~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~ 243 (266)
T 2of3_A 207 SVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMW 243 (266)
T ss_dssp CHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999999999998887644
No 81
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.24 E-value=2.7e-09 Score=109.95 Aligned_cols=314 Identities=16% Similarity=0.196 Sum_probs=219.5
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCcc-c---cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHH
Q 009975 175 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-R---MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA 250 (521)
Q Consensus 175 ~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~-~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 250 (521)
.++..+.+.+.+.... ..++..+..++...+.... . -.++|.+.....|....||.+|..+...+...++++..
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~ 131 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI 131 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 5777777777776544 7788888888765543211 1 23578888888999999999999999999999998765
Q ss_pred HHhhhHHHHHhccCC-cHHHHHHHHHHHHccccccChHH--HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhh
Q 009975 251 IQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 327 (521)
Q Consensus 251 ~~~~~~~l~~~~~d~-~~~vr~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 327 (521)
..++|.+...+.+. .|..+.+++..+..++...+... ...+++|.+...+.|..++|...|..++..++..++...
T Consensus 132 -~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d 210 (986)
T 2iw3_A 132 -KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD 210 (986)
T ss_dssp -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT
T ss_pred -HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc
Confidence 66788887777554 69999999999999987654332 356899999999999999999999999999999999777
Q ss_pred HhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhh--C--hhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH
Q 009975 328 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL--G--VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 403 (521)
Q Consensus 328 ~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~--~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 403 (521)
+ +..+|.+.+.+.+++. | -+++..++... . ......-+.|++...|+++...+++.++-.+.++++-...
T Consensus 211 ~-~~~~~~~~~~~~~p~~-~----~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~ 284 (986)
T 2iw3_A 211 I-ERFIPSLIQCIADPTE-V----PETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED 284 (986)
T ss_dssp T-GGGHHHHHHHHHCTTH-H----HHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC
T ss_pred h-hhhHHHHHHHhcChhh-h----HHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC
Confidence 6 7889999999988853 2 23333332221 1 1233567899999999999999999999999999987754
Q ss_pred H----HHHhhhHHHHHhhhcC-cchHHHHHHHHHHHHhhcccCh--HH---------HhhcHHHHHHhhcCCCC-----c
Q 009975 404 E----WAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGS--EI---------TCSRLLPVVINASKDRV-----P 462 (521)
Q Consensus 404 ~----~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~--~~---------~~~~il~~l~~~l~d~~-----~ 462 (521)
. .+...++|.+...... +++.+|..+-.++..+....+. +. -...++..+...+.... .
T Consensus 285 ~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (986)
T 2iw3_A 285 PQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNVGEDDAIPELSHAGDVSTTLQVVNELLKDETVAPRFK 364 (986)
T ss_dssp HHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTCBTTTBCCCCCCTTCHHHHHHHHHHHTTTSCCCGGGH
T ss_pred HHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhccccccccccccccchHHHHHHHHHHHhcccccccchh
Confidence 3 3456777777775543 6788998888888877553222 00 01234444555444321 2
Q ss_pred hHHHHHHHHHHHHHhh--hchHHHHhhHHHHHHHhcC
Q 009975 463 NIKFNVAKVLQSLIPI--VDQSMVEKTIRPCLVELTE 497 (521)
Q Consensus 463 ~VR~~a~~~l~~~~~~--~~~~~~~~~~~~~l~~l~~ 497 (521)
.+...++...+.++.. +....+...+.|.+..+..
T Consensus 365 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (986)
T 2iw3_A 365 IVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLH 401 (986)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHTHHHHTTTSC
T ss_pred hHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHhcc
Confidence 2334444444444332 1223345667777776554
No 82
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.24 E-value=9.6e-08 Score=100.68 Aligned_cols=486 Identities=9% Similarity=0.029 Sum_probs=270.7
Q ss_pred hhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhHHHHhHHHHHHHhhc-CCCCcchhhhhhhhhhh----cCCCChH-
Q 009975 20 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA-GEWFTARVSACGLFHIA----YPSAPDI- 93 (521)
Q Consensus 20 ~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~-~~~~~~r~~~~~~~~~~----~~~~~~~- 93 (521)
.+-..+..+. ++++..|+.|.+.|..+-+. + .-++....+.. +.+..+|..|...+... +..++++
T Consensus 29 ~Le~lv~~ly-~p~~~~r~qA~~~L~q~q~s--p-----~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~ 100 (1073)
T 3gjx_A 29 LLDNVVNCLY-HGEGAQQRMAQEVLTHLKEH--P-----DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQ 100 (1073)
T ss_dssp HHHHHHHTTT-CSSHHHHHHHHHHHHTSSCC--S-----CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHHHh-CCCHHHHHHHHHHHHHHHcC--c-----hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 3334444444 45677899999888665442 1 12233323322 34567787777665443 3456665
Q ss_pred ---HHHHHHHHHHHhcCC-----CChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhh
Q 009975 94 ---LKTELRSIYTQLCQD-----DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK 165 (521)
Q Consensus 94 ---~~~~l~~~l~~l~~~-----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 165 (521)
.++.++..+.+...+ .++.++...+.++..+++..-+ ..|+.+++.+..+.+. ++..+...+.+|..+.+
T Consensus 101 ~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P-~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~E 178 (1073)
T 3gjx_A 101 CEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWP-KHWPTFISDIVGASRT-SESLCQNNMVILKLLSE 178 (1073)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhCh-hhccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 445555555554433 3578889999999999877443 3477777777776653 34556777888888877
Q ss_pred hcCh--------h----------hhhhhhHHHHHHhc-CCCChHHHHHHHHHHHHHHHHhCCCc-cccchHHHH-HHhcC
Q 009975 166 LLEP--------Q----------DCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAY-VRLLR 224 (521)
Q Consensus 166 ~~~~--------~----------~~~~~l~~~l~~~~-~d~~~~vR~~~~~~l~~i~~~~~~~~-~~~~l~~~l-~~~l~ 224 (521)
.+.+ . ...+.+++++...+ ...++.+...+.++++.+..-++-+. ....+++.+ ..++.
T Consensus 179 EV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~ 258 (1073)
T 3gjx_A 179 EVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN 258 (1073)
T ss_dssp HHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS
T ss_pred HHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC
Confidence 6432 0 01123555554444 34577788888888888877655332 235688877 57775
Q ss_pred CChHHHHHHHHHhHHHHHhhhCH---HH---HHHhhhHHHHHhc-------------cCCcHHHHHHHHHHHHccccccC
Q 009975 225 DNEAEVRIAAAGKVTKFCRILNP---EL---AIQHILPCVKELS-------------SDSSQHVRSALASVIMGMAPLLG 285 (521)
Q Consensus 225 d~~~~vr~~a~~~l~~l~~~~~~---~~---~~~~~~~~l~~~~-------------~d~~~~vr~~~~~~l~~i~~~~~ 285 (521)
+ +.+|.+|+++|..+...-.+ +. ....++..+...+ .+.+...-...+..+..+.....
T Consensus 259 ~--~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~ 336 (1073)
T 3gjx_A 259 V--PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHG 336 (1073)
T ss_dssp S--HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred C--hHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 4 57999999999998764211 11 1111221111111 12222222233333333322211
Q ss_pred h------H--HHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchh--------------------hHhhhHHHHHH
Q 009975 286 K------D--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--------------------LLSQSLLPAIV 337 (521)
Q Consensus 286 ~------~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--------------------~~~~~~~~~l~ 337 (521)
. + ......+..+..+..-++.++-+.+...+..+...+-.+ .......|.+.
T Consensus 337 ~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~ 416 (1073)
T 3gjx_A 337 QLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLS 416 (1073)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHH
T ss_pred HHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHH
Confidence 1 1 111223444566666778888888888777665543211 01111233332
Q ss_pred HHh-------c----------CCCh------------HHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcC--CCcHHH
Q 009975 338 ELA-------E----------DRHW------------RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ--DKVYSI 386 (521)
Q Consensus 338 ~~~-------~----------~~~~------------~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~v 386 (521)
++. . +... ..+...-+++..+ .+++.+.....+.+.+.+.+. ..+|..
T Consensus 417 ~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~l-t~l~~~~~~~i~~~~l~~~~~~~~~sW~~ 495 (1073)
T 3gjx_A 417 KVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYL-THLDYVDTEIIMTKKLQNQVNGTEWSWKN 495 (1073)
T ss_dssp HHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHHHHTSCCCCHHH
T ss_pred HHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 221 0 0000 1122222333332 344444444555565554444 356999
Q ss_pred HHHHHHHHHHHHHHhCHH---HHHhhhHHHHHhhhcCc-----chHHHHHHHHHHHHhhcccCh-HHHhhcHHHHHHhhc
Q 009975 387 RDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNP-----HYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINAS 457 (521)
Q Consensus 387 r~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~~~-----~~~~r~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~l 457 (521)
+++++.++|.++..+..+ .+...+++.|..+...+ ...++...+..+|...+-+.. ..+.+.++..++..+
T Consensus 496 lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m 575 (1073)
T 3gjx_A 496 LNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFM 575 (1073)
T ss_dssp HHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHH
Confidence 999999999997665532 23455666666554332 355677677788887664322 335677888888889
Q ss_pred CCCCchHHHHHHHHHHHHHhhhchHH----------HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 009975 458 KDRVPNIKFNVAKVLQSLIPIVDQSM----------VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 518 (521)
Q Consensus 458 ~d~~~~VR~~a~~~l~~~~~~~~~~~----------~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~ 518 (521)
.++++.|+.+|+.++..+++..+... +...++..+.....+=+++-.....+|++.+..-.
T Consensus 576 ~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~ 646 (1073)
T 3gjx_A 576 HETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQ 646 (1073)
T ss_dssp TCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999988765432 22333333334444445555566666666655443
No 83
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.22 E-value=3e-09 Score=98.61 Aligned_cols=214 Identities=12% Similarity=0.045 Sum_probs=159.4
Q ss_pred cHHHHHHHHHHHHccccccCh--HHH--HHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhc---hhh-HhhhHHHHHH
Q 009975 266 SQHVRSALASVIMGMAPLLGK--DAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDL-LSQSLLPAIV 337 (521)
Q Consensus 266 ~~~vr~~~~~~l~~i~~~~~~--~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~-~~~~~~~~l~ 337 (521)
+..+|..+++++..++..-.. ..+ ....+|.+..++.+++++++..|+.+|..+...-+ ... .....+|.+.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 467899999999999854321 122 13469999999999999999999999999875311 122 2246788888
Q ss_pred HH-hcCCChHHHHHHHHHhHHHHhhhCh--hhh--HHHHHHHHHHHcCCCcH----HHHHHHHHHHHHHHHHh--CHHH-
Q 009975 338 EL-AEDRHWRVRLAIIEYIPLLASQLGV--GFF--DDKLGALCMQWLQDKVY----SIRDAAANNLKRLAEEF--GPEW- 405 (521)
Q Consensus 338 ~~-~~~~~~~vr~~~~~~l~~l~~~~~~--~~~--~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~l~~~~--~~~~- 405 (521)
++ ..+.+..++..++.++..++..... ..+ ....+|.+..++.+.+. .++..|..+|..+.... +.+.
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 86 5667889999999999888863321 122 24578899999886554 58998999998887531 2221
Q ss_pred ---HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccCh---HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh
Q 009975 406 ---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 479 (521)
Q Consensus 406 ---~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~ 479 (521)
.....+|.|..++.+++..++..|+.++..++..-.. .......+|.+..++.++++.+|..|+.+|..+...-
T Consensus 257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 2245789999999999999999999999999842111 1223567899999999999999999999999998763
No 84
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.21 E-value=1.4e-09 Score=100.85 Aligned_cols=249 Identities=11% Similarity=-0.012 Sum_probs=174.1
Q ss_pred HHHHHHHHHHccccccCh--HHHHHhHHHHHHHhhcC-----------CChHHHHHHHHHHHHhhhhhc--hhhH--hhh
Q 009975 269 VRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKD-----------EFPDVRLNIISKLDQVNQVIG--IDLL--SQS 331 (521)
Q Consensus 269 vr~~~~~~l~~i~~~~~~--~~~~~~l~~~l~~~l~d-----------~~~~vr~~a~~~l~~~~~~~~--~~~~--~~~ 331 (521)
....+++++++++..-.. .......+|.+..++.. .++.++..|+.+|..++..-. +..+ ...
T Consensus 48 ~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~G 127 (354)
T 3nmw_A 48 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 127 (354)
T ss_dssp THHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 344566666666532100 01122356666666631 246799999999999975322 1122 245
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHHHHhhhCh---hh-hHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHHHHHh-C--H
Q 009975 332 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GF-FDDKLGALCMQW-LQDKVYSIRDAAANNLKRLAEEF-G--P 403 (521)
Q Consensus 332 ~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~-~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~-~--~ 403 (521)
.+|.+.+++.+++..++..++.+|..++..-+. .. .....+|.+..+ ++..+..+++.|+.++..+.... + .
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~ 207 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 207 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhH
Confidence 699999999999999999999999999764211 11 123457888886 56678899999999998887522 1 1
Q ss_pred HHH-HhhhHHHHHhhhcCcch----HHHHHHHHHHHHhhcc--cChHH----HhhcHHHHHHhhcCCCCchHHHHHHHHH
Q 009975 404 EWA-MQHITPQVLEMINNPHY----LYRMTILRAISLLAPV--MGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVL 472 (521)
Q Consensus 404 ~~~-~~~l~~~l~~~l~~~~~----~~r~~a~~~l~~l~~~--~~~~~----~~~~il~~l~~~l~d~~~~VR~~a~~~l 472 (521)
... ....+|.|..++.+++. .++..++.++..++.. .+.+. .....+|.++.++.+++..++..|+.+|
T Consensus 208 ~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 287 (354)
T 3nmw_A 208 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 287 (354)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHH
Confidence 222 35688999998876543 5888999999988752 12221 2345789999999999999999999999
Q ss_pred HHHHhhhch---HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 009975 473 QSLIPIVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 517 (521)
Q Consensus 473 ~~~~~~~~~---~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~ 517 (521)
..++..-.. .....-.+|.|.+++.+.+.++|..|++++..|..-
T Consensus 288 ~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 288 WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 999842111 123356789999999999999999999999998753
No 85
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.16 E-value=5.3e-07 Score=95.12 Aligned_cols=460 Identities=8% Similarity=-0.011 Sum_probs=256.5
Q ss_pred chhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhh----cChh---HHHHhHHHHHHHhhcCC-----CCcchhhhhhh
Q 009975 15 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ----MRES---DLVDWYIPLVKRLAAGE-----WFTARVSACGL 82 (521)
Q Consensus 15 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~----~~~~---~~~~~l~p~i~~~~~~~-----~~~~r~~~~~~ 82 (521)
++.+.....+| .++.++.+|..|...|...++. ++++ .+++.++.++.+...++ ...++...+.+
T Consensus 59 p~aw~~~~~iL---~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~ 135 (1073)
T 3gjx_A 59 PDAWTRVDTIL---EFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMI 135 (1073)
T ss_dssp SCHHHHHTCC------CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHH
T ss_pred chHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHH
Confidence 34444444333 2356889999999999887774 5554 46678888877655432 22334444444
Q ss_pred hhhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch------------------hhHHHHHHHHHHh
Q 009975 83 FHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA------------------HLKTDIMSIFEDL 144 (521)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~------------------~~~~~l~~~l~~l 144 (521)
+..++.+.-++.++.+++-+.++.+. ++..+......|..+.+.+..- ...+.+++++...
T Consensus 136 La~I~k~~~P~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~i 214 (1073)
T 3gjx_A 136 LVQILKQEWPKHWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFV 214 (1073)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhChhhccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444322111244455555554432 3556666777777777663210 1124466666665
Q ss_pred hc-CCChhHHHHHHHHHHHHhhhcChhhh-hhhhHHHH-HHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHH--
Q 009975 145 TQ-DDQDSVRLLAVEGCAALGKLLEPQDC-VAHILPVI-VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAY-- 219 (521)
Q Consensus 145 ~~-d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~l~~~l-~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l-- 219 (521)
+. ..++.+...+.++++...+-++-+.. ...+++.+ ..++. ++..|..+++++..++..-. +.....+...+
T Consensus 215 L~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~-~~~~~~~~~lf~~ 291 (1073)
T 3gjx_A 215 MENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSV-SQYEEQFETLFTL 291 (1073)
T ss_dssp HHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCS-GGGHHHHHHHHHH
T ss_pred hcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccc-cchHHHHHHHHHH
Confidence 54 34667778888999988887765432 34577766 46654 56799999999999886411 11111221111
Q ss_pred -----HHhc-------------CCChHHHHHHHHHhHHHHHhhhC------HH--HHHHhhhHHHHHhccCCcHHHHHHH
Q 009975 220 -----VRLL-------------RDNEAEVRIAAAGKVTKFCRILN------PE--LAIQHILPCVKELSSDSSQHVRSAL 273 (521)
Q Consensus 220 -----~~~l-------------~d~~~~vr~~a~~~l~~l~~~~~------~~--~~~~~~~~~l~~~~~d~~~~vr~~~ 273 (521)
.+.+ .+++.+.-..-...+..+++... ++ ......+.++..+...++..+-..+
T Consensus 292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kit 371 (1073)
T 3gjx_A 292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKIC 371 (1073)
T ss_dssp HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 1111 23333333333334443333221 11 1122233344555555555554444
Q ss_pred HHHHHccccccC----------------------h-----HHHHHhHHHHHHHhhcCCC--------------------h
Q 009975 274 ASVIMGMAPLLG----------------------K-----DATIEQLLPIFLSLLKDEF--------------------P 306 (521)
Q Consensus 274 ~~~l~~i~~~~~----------------------~-----~~~~~~l~~~l~~~l~d~~--------------------~ 306 (521)
......+...+- . ....+.+...+...+.-++ .
T Consensus 372 f~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~ 451 (1073)
T 3gjx_A 372 LEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTD 451 (1073)
T ss_dssp HHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCH
T ss_pred HHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcc
Confidence 444333322110 0 0112233333333333111 0
Q ss_pred --HHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhc--CCChHHHHHHHHHhHHHHhhhCh---hhhHHHHHHHHHHHc
Q 009975 307 --DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWL 379 (521)
Q Consensus 307 --~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l 379 (521)
..++..-.++.. ...++.+.....+.+.+.+... ..+|..+.+++.+++.++..+.+ +.+.+.+++.+..+.
T Consensus 452 ~~~ly~~mrd~L~~-lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~ 530 (1073)
T 3gjx_A 452 SINLYKNMRETLVY-LTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLC 530 (1073)
T ss_dssp HHHHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccc
Confidence 112222223322 2234444444566666665443 35799999999999999887764 255677778777776
Q ss_pred CCC-----cHHHHHHHHHHHHHHHHHhCHH-HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHH---------
Q 009975 380 QDK-----VYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--------- 444 (521)
Q Consensus 380 ~d~-----~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~--------- 444 (521)
..+ ...++...+..+|...+-+... .+.+.++..+.+.+.+++..++.+|+.++..++..++...
T Consensus 531 e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~ 610 (1073)
T 3gjx_A 531 EQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVM 610 (1073)
T ss_dssp HHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSS
T ss_pred ccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 433 3445666667888876655332 2456778888888899999999999999999998766543
Q ss_pred -HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH
Q 009975 445 -TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 482 (521)
Q Consensus 445 -~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~ 482 (521)
+.+.++..+.....+=.+.-.....++++.++...+.+
T Consensus 611 p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~ 649 (1073)
T 3gjx_A 611 PFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQ 649 (1073)
T ss_dssp CHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCc
Confidence 33444444444455555666667888888888877653
No 86
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.16 E-value=6.2e-08 Score=76.52 Aligned_cols=215 Identities=17% Similarity=0.178 Sum_probs=134.7
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhh
Q 009975 96 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH 175 (521)
Q Consensus 96 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 175 (521)
++++..+..++.|+-|.||+.|...+..+++..+ +.+.+.+-.++.-+..++.-..-....+.+|.++..-+ +....
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~-el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P--e~v~~ 107 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE-DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--ELVKS 107 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--HHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH-HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--HHHHh
Confidence 4566667777777788888888888888876554 23333333333333455555555555677777766532 24455
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhh
Q 009975 176 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL 255 (521)
Q Consensus 176 l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 255 (521)
++|.+..-..-.++++|-....++++|++.-+.- ...+..-+..++.+++..=|.+|++.++.+++... .+....+
T Consensus 108 vVp~lfanyrigd~kikIn~~yaLeeIaranP~l--~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~--~yv~PfL 183 (253)
T 2db0_A 108 MIPVLFANYRIGDEKTKINVSYALEEIAKANPML--MASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF--KYVNPFL 183 (253)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH--HHHGGGH
T ss_pred hHHHHHHHHhcCCccceecHHHHHHHHHHhChHH--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc--cccCcch
Confidence 6677766666667788888888888887642211 12233444556677777777777766666555321 2334566
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q 009975 256 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 320 (521)
Q Consensus 256 ~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~ 320 (521)
|-+..++.|.+.-||.+++++++.++..-++ ...++...+.-++|.+..|.....++++.+.
T Consensus 184 prL~aLL~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 184 PRIINLLHDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 7777778888888888888888877754433 2334444455567777777777777777654
No 87
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=99.14 E-value=5.8e-10 Score=103.93 Aligned_cols=256 Identities=11% Similarity=0.056 Sum_probs=170.9
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHH
Q 009975 215 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 294 (521)
Q Consensus 215 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~ 294 (521)
+...+..-+-|+.|++|.+|+-+|.++....|...- .. -..+.+-.+|..++-++.++.+..++..
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAG--R~------~~~N~DLAvRLLCVLALDRFGDYVSDqV------ 240 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGD--IQ------IRVDSKLFSKIYEILVTDKFNDFVDDRT------ 240 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC------CC------CCCCTTHHHHHHHHHHHBCCBBCSSSSC------
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCc--ee------ccccHHHHHHHHHHHHhccccccccCee------
Confidence 677777778889999999999999998887764211 01 1122355677777777777776655422
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHH
Q 009975 295 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL 374 (521)
Q Consensus 295 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 374 (521)
-..||+.++++|+.+ ..+..+ ..++..+......+.|.+|-..+-.+-.+...+.. .+.++|.
T Consensus 241 ----------VAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~a 303 (800)
T 3oc3_A 241 ----------VAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRK 303 (800)
T ss_dssp ----------BCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHH
T ss_pred ----------eeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHH
Confidence 257999999999998 777655 23444444455778899999887777766222222 5778999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcC--cchHHHHHHHHHHHHhhcccChHHHhhcHHHH
Q 009975 375 CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSEITCSRLLPV 452 (521)
Q Consensus 375 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~ 452 (521)
++..|+|.+.+||..|+.+|-.++ .++. ...++..+.+.+.+ .-..--...+..++.+...-......+.++|.
T Consensus 304 VL~GL~D~DDDVRAVAAetLiPIA---~p~~-l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPR 379 (800)
T 3oc3_A 304 LVSLLSSPDEDIKLLSAELLCHFP---ITDS-LDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKD 379 (800)
T ss_dssp HHHHTTCSSHHHHHHHHHHHTTSC---CSST-HHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGG
T ss_pred HHhhcCCcccHHHHHHHHHhhhhc---chhh-HHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHH
Confidence 999999999999999999988777 2111 22333334333322 11112233444555544322111122488999
Q ss_pred HHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHH
Q 009975 453 VINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQ 512 (521)
Q Consensus 453 l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~~D~~~~vr~~a~~al~ 512 (521)
++..+.++.+.||.++++++..+.. ...+.-..++++-+++.+|+..+.+++.
T Consensus 380 L~PFLRHtITSVR~AVL~TL~tfL~-------~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 380 IFPCFTSPVPEVRTSILNMVKNLSE-------ESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp TGGGGTCSSHHHHHHHHHHTTTCCC-------HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHhhhcCCcHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999999999999999987771 1233334556788899999999998885
No 88
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.14 E-value=9.5e-09 Score=92.63 Aligned_cols=187 Identities=11% Similarity=0.066 Sum_probs=140.2
Q ss_pred hHHHHHHHhhcCCC------------hHHHHHHHHHHHHhhhhhch--hhHhhhHHHHHHH-HhcCCChHHHHHHHHHhH
Q 009975 292 QLLPIFLSLLKDEF------------PDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIP 356 (521)
Q Consensus 292 ~l~~~l~~~l~d~~------------~~vr~~a~~~l~~~~~~~~~--~~~~~~~~~~l~~-~~~~~~~~vr~~~~~~l~ 356 (521)
+.++..+..+.++. .+-|..|+..|..++..... .......+|.+.. ++.+++..+|..++.+++
T Consensus 28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg 107 (296)
T 1xqr_A 28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIG 107 (296)
T ss_dssp HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44566666666652 24677788888887765432 1222356788888 999999999999999999
Q ss_pred HHHhhhCh---hhhHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHH
Q 009975 357 LLASQLGV---GFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTI 429 (521)
Q Consensus 357 ~l~~~~~~---~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a 429 (521)
.++..-+. .......+|.++.+++ +++..+|..|+.+|+.++..... .+.....+|.|..++.+++..+|..+
T Consensus 108 ~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A 187 (296)
T 1xqr_A 108 TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKS 187 (296)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 99864321 1223346788888887 56889999999999999854322 22345688999999999999999999
Q ss_pred HHHHHHhhcccCh---HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 009975 430 LRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 478 (521)
Q Consensus 430 ~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~ 478 (521)
+++++.++..-.. ......++|.++.++.++++.||..++.+|+.+...
T Consensus 188 ~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 188 AFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999865221 223467899999999999999999999999999876
No 89
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.13 E-value=1.7e-09 Score=97.79 Aligned_cols=181 Identities=17% Similarity=0.165 Sum_probs=112.9
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHhhhChhhhH-------HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHH----
Q 009975 336 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD-------DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---- 404 (521)
Q Consensus 336 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~-------~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---- 404 (521)
+.+-+.+++|..|..+++.+..+....+..... ..+.+.+...+.|.|..|...++.++..++..++..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 445667777888877777776665543322111 113455566777888888887777777777655432
Q ss_pred ----HHHhhhHHHHHh-hhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh
Q 009975 405 ----WAMQHITPQVLE-MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 479 (521)
Q Consensus 405 ----~~~~~l~~~l~~-~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~ 479 (521)
.....++|.+.+ .+.+++..+|..+..++..++...+. ...+++.+...+++.+|.+|..++..|..+...+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 122445666654 36777777777777777766653332 1334566677777778888888888887777766
Q ss_pred chHH-----HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 009975 480 DQSM-----VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 519 (521)
Q Consensus 480 ~~~~-----~~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~~ 519 (521)
|... ....+++.+.++++|+|++||..|..++..+...+|
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 5432 223455566667778888888888888777776665
No 90
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.12 E-value=9.7e-10 Score=100.51 Aligned_cols=280 Identities=12% Similarity=0.030 Sum_probs=119.0
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhh
Q 009975 175 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 254 (521)
Q Consensus 175 ~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 254 (521)
.+++-+.+++.+++...|+.+.-.+..+++. .++.. -+.+.+.+-++|+++-+|-.|+.+++.+... ...+.+
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i--Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~----~m~~~l 140 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI--IVTSSLTKDMTGKEDSYRGPAVRALCQITDS----TMLQAI 140 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG--GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT----TTHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH--HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH----HHHHHH
Confidence 4555566667777777777766666655543 22221 4566666667777777777777777766441 234556
Q ss_pred hHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHH
Q 009975 255 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 334 (521)
Q Consensus 255 ~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 334 (521)
.+.+++.+.|+++.||..|+-+...+.+..++ ..+.+++.+..++.|.++.|...|+..+..+...- ...+ ..+++
T Consensus 141 ~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe--~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-~~a~-~kLv~ 216 (355)
T 3tjz_B 141 ERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD--VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-RLAV-SKMIS 216 (355)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH--HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-HHHH-HHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-hHHH-HHHHH
Confidence 77777777777777777777777666544333 23456777777777888877777777777765421 1111 22233
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHH
Q 009975 335 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 414 (521)
Q Consensus 335 ~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l 414 (521)
.+.+. .-.++......++.+..+...- .+.....+.+.+..+++..++.|.-.|++++-.+.. .+.. ........+
T Consensus 217 ~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~-~~~~a~~~L 292 (355)
T 3tjz_B 217 KFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAK-ELAPAVSVL 292 (355)
T ss_dssp HHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-------------CCCTH
T ss_pred HHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHH-HHHHHHHHH
Confidence 22210 0112222222232222221110 011223455555555666666665555555444322 1110 111222333
Q ss_pred HhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHH
Q 009975 415 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKV 471 (521)
Q Consensus 415 ~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~ 471 (521)
..++.+++..+|..++..+..+....+. .....-..+..+++|++..++.-|+.+
T Consensus 293 ~~fLss~d~niryvaLr~L~~l~~~~P~--~v~~~n~~ie~li~d~n~sI~t~Aitt 347 (355)
T 3tjz_B 293 QLFCSSPKAALRYAAVRTLNKVAMKHPS--AVTACNLDLENLVTDANRSIATLAITT 347 (355)
T ss_dssp HHHHHSSSSSSHHHHHHCC--------------------------------------
T ss_pred HHHHcCCCchHHHHHHHHHHHHHHHCcH--HHHHHHHHHHHHccCCcHhHHHHHHHH
Confidence 3344444455555555555554442221 112223334444555554444444433
No 91
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.10 E-value=2.9e-09 Score=97.37 Aligned_cols=289 Identities=14% Similarity=0.043 Sum_probs=165.8
Q ss_pred CCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcC
Q 009975 89 SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE 168 (521)
Q Consensus 89 ~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 168 (521)
.++......++.-+.++.++++...|+-.--.+..+++. .++ .. .....+.+=++++++.+|..|+++++.+...
T Consensus 60 ~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e-~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~-- 134 (355)
T 3tjz_B 60 HLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED-VI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDS-- 134 (355)
T ss_dssp CCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC-GG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--
T ss_pred CCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH-HH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--
Confidence 344444567888888899999999999988888887765 322 22 5667777777889999999999999988643
Q ss_pred hhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHH
Q 009975 169 PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE 248 (521)
Q Consensus 169 ~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 248 (521)
+..+.+.+.+.+.+.|.++.||+.|+-+...+.... ++. ...+++.+.+++.|.++.|...|+..+..+... ++.
T Consensus 135 --~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~-pe~-v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~~ 209 (355)
T 3tjz_B 135 --TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS-FDV-VKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DRL 209 (355)
T ss_dssp --TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC-HHH-HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CHH
T ss_pred --HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC-HHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-chH
Confidence 366788999999999999999999999877665321 222 245788888899999999999998888888763 222
Q ss_pred HHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhH
Q 009975 249 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 328 (521)
Q Consensus 249 ~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 328 (521)
...++++.+... .-.++...-..++.+..+++.- .....+.+.+.+...++..++.|...|+.++..+.. .+...+
T Consensus 210 -a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~~ 285 (355)
T 3tjz_B 210 -AVSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKEL 285 (355)
T ss_dssp -HHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC----------
T ss_pred -HHHHHHHHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHHH
Confidence 223444444331 1224444444555554443311 012346788899999999999999999999988755 222222
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 009975 329 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNL 394 (521)
Q Consensus 329 ~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 394 (521)
......+..++.+++..+|..++..+..+....+.. ......-+..+++|+|..++.-|+..|
T Consensus 286 -~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~--v~~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 286 -APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA--VTACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp ---CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------------
T ss_pred -HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH--HHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence 344556667778888899999999999888765432 223445567888999988877766554
No 92
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.10 E-value=8.6e-09 Score=89.67 Aligned_cols=179 Identities=14% Similarity=0.179 Sum_probs=130.6
Q ss_pred HHhcCCChHHHHHHHHHhHHHHHhhhCHHHHH---HhhhHHHHHhccCCcHHHHHHHHHHHHccccccChH------HHH
Q 009975 220 VRLLRDNEAEVRIAAAGKVTKFCRILNPELAI---QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD------ATI 290 (521)
Q Consensus 220 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~------~~~ 290 (521)
...+-+.++.-|..++..|....... ++... +.++..+.-.+.|+|..|-..+++.+..+...++.. ...
T Consensus 52 ~~~lfs~d~k~~~~ale~L~~~l~~~-~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea 130 (266)
T 2of3_A 52 MSQLFHKDFKQHLAALDSLVRLADTS-PRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV 130 (266)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHHC-HHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhhhC-hHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 33344445666666666666654432 22211 223444443445788888888888888776555332 113
Q ss_pred HhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHH
Q 009975 291 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK 370 (521)
Q Consensus 291 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 370 (521)
..++|.+..-+.|+.+.||..+...+..+....++ ..+.+.+.+.++++||++|..++..+..+....|... ..
T Consensus 131 ~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~ 204 (266)
T 2of3_A 131 SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--LK 204 (266)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GG
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--cc
Confidence 56899999999999999999999988888776665 3467777778899999999999999999999988763 33
Q ss_pred HH---HHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHH
Q 009975 371 LG---ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 405 (521)
Q Consensus 371 l~---~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 405 (521)
.+ |.+..++.|++..||.+|+.++..+....|...
T Consensus 205 ~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 205 SLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp GGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred cccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 56 888899999999999999999999998888653
No 93
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.09 E-value=4e-08 Score=81.26 Aligned_cols=217 Identities=13% Similarity=0.100 Sum_probs=168.0
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc---hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh-hhh
Q 009975 97 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDC 172 (521)
Q Consensus 97 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~ 172 (521)
..+..+.+++.++|+.++..+..+|+.+.+..+. ....+.++|-+..++.++++.+...|+++++.+.+..+- +..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 4667888889999999999999999999998654 345678899999999999999999999999999998764 345
Q ss_pred hhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHH
Q 009975 173 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ 252 (521)
Q Consensus 173 ~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 252 (521)
...+...+.....+++...+..+++.++.+ ........+..++.+++.+.+..++.+++.++..++...+.....+
T Consensus 113 y~Kl~~aL~dlik~~~~il~~eaae~Lgkl----kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~ 188 (265)
T 3b2a_A 113 FLKAAKTLVSLLESPDDMMRIETIDVLSKL----QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLT 188 (265)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHC----CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGG
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhCcC----CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHH
Confidence 566888888999999999999999999977 3333346789999999999999999999999999998776545556
Q ss_pred hhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHH---hHHHHHHHhh-cCCChHHHHHHHHHHH
Q 009975 253 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE---QLLPIFLSLL-KDEFPDVRLNIISKLD 317 (521)
Q Consensus 253 ~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~---~l~~~l~~~l-~d~~~~vr~~a~~~l~ 317 (521)
.++.-+..+++.+++.++.-+...+-.+...--.+.... .+....-++. -...|.+|..|-....
T Consensus 189 ~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~ 257 (265)
T 3b2a_A 189 LILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSD 257 (265)
T ss_dssp GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Confidence 777888888898999999999998888765422221122 2222333333 3455667766644433
No 94
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.08 E-value=9.8e-09 Score=92.52 Aligned_cols=172 Identities=17% Similarity=0.140 Sum_probs=131.3
Q ss_pred HHHHHHHHHhHHHHhhhChh--hhHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHHHHhC---HHHHHhhhHHHHHhhhc
Q 009975 346 RVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQ-WLQDKVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMIN 419 (521)
Q Consensus 346 ~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~ 419 (521)
..|..++..|..+++..... ......+|.++. +++++++.||..|+.+++.++.... ........+|.|..++.
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 45666777777777654321 222335788888 9999999999999999999985321 12234567889998887
Q ss_pred -CcchHHHHHHHHHHHHhhcccCh---HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch---HHHHhhHHHHH
Q 009975 420 -NPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCL 492 (521)
Q Consensus 420 -~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~---~~~~~~~~~~l 492 (521)
+++..+|..|+++++.++..... .+.....+|.+..++.+++..+|..|+++|+.++..... .....-++|.|
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L 214 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence 45889999999999999864332 223356899999999999999999999999999875221 23346688999
Q ss_pred HHhcCCCCccHHHHHHHHHHHHHHh
Q 009975 493 VELTEDPDVDVRFFATQAIQSIDHV 517 (521)
Q Consensus 493 ~~l~~D~~~~vr~~a~~al~~l~~~ 517 (521)
..++.+++.+||..|..++..|...
T Consensus 215 v~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 215 VALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999999999999998754
No 95
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.07 E-value=2.5e-08 Score=82.49 Aligned_cols=222 Identities=14% Similarity=0.118 Sum_probs=172.4
Q ss_pred HhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhh----chhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChh-
Q 009975 291 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG- 365 (521)
Q Consensus 291 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~- 365 (521)
+..+..+..+++|.++.++..++.+++.+.+.. ....+ +.++|.+.++..+++.++-..+++++..+....+..
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 346778888999999999999999999998874 22223 788999999999999999999999999999886542
Q ss_pred hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH
Q 009975 366 FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT 445 (521)
Q Consensus 366 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~ 445 (521)
.....+...+...+++++.-++.-+++.++.+ +... ....+...+..++.++|.+++.+++.++..++..-++...
T Consensus 111 ~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~---~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i 186 (265)
T 3b2a_A 111 KTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLE---DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGH 186 (265)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSC---CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCC
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cccc---chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHH
Confidence 22356788888999999999999999999888 3222 2345777788888999999999999999999987776666
Q ss_pred hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHH---hhHHHHHHHhc-CCCCccHHHHHHHHHHHHHHh
Q 009975 446 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE---KTIRPCLVELT-EDPDVDVRFFATQAIQSIDHV 517 (521)
Q Consensus 446 ~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~---~~~~~~l~~l~-~D~~~~vr~~a~~al~~l~~~ 517 (521)
.+.+..-+-.+++.+++.++..|+.++..+...--.+... ..+...+.++. .-.-+.+|..|...-..+..-
T Consensus 187 ~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~~le~~ 262 (265)
T 3b2a_A 187 LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSDLIDSV 262 (265)
T ss_dssp GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Confidence 7777777888888899999999999999987642111111 34455556666 677888888888777666543
No 96
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.03 E-value=7.4e-07 Score=96.80 Aligned_cols=447 Identities=11% Similarity=-0.011 Sum_probs=242.7
Q ss_pred cCchhHHHHHHHHHHHHHHhh----cChh---HHHHhHHHHHHHhhc---CCCCcchhhhhhhhhhhcCCCChHHHHHHH
Q 009975 30 TVEETCVRDKAVESLCRIGSQ----MRES---DLVDWYIPLVKRLAA---GEWFTARVSACGLFHIAYPSAPDILKTELR 99 (521)
Q Consensus 30 ~~~~~~vR~~a~~~l~~i~~~----~~~~---~~~~~l~p~i~~~~~---~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~ 99 (521)
.+.+..+|..|...|...+.. ++++ .+++.++..+.+... +....+|...+.++..++.+.-+..+..++
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll 136 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDML 136 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHH
Confidence 456789999999888877654 4543 455666666554322 134556666666666555432122366777
Q ss_pred HHHHHhcCCCChHHHHHHHHhHHHHHHhhCc-----h-----------hhHHHHHHHHHHhhcC----------------
Q 009975 100 SIYTQLCQDDMPMVRRSAASNLGKFAATVEP-----A-----------HLKTDIMSIFEDLTQD---------------- 147 (521)
Q Consensus 100 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~-----~-----------~~~~~l~~~l~~l~~d---------------- 147 (521)
+.+.++++. ++..+..+...|..+.+.... . ...+.+++.+.+.+.+
T Consensus 137 ~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~ 215 (1204)
T 3a6p_A 137 IELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQES 215 (1204)
T ss_dssp HHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchh
Confidence 777776654 566788888888888765221 0 0112445555544432
Q ss_pred ---CChhHHHHHHHHHHHHhhhcChhhhh---hhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCC-Cc---cccch--
Q 009975 148 ---DQDSVRLLAVEGCAALGKLLEPQDCV---AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EP---TRMDL-- 215 (521)
Q Consensus 148 ---~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~-~~---~~~~l-- 215 (521)
++..++..+++++.....-++..... ..+++.+..++.+ +.+|..|+++|..++..... +. ....+
T Consensus 216 ~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~ 293 (1204)
T 3a6p_A 216 KAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGD 293 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSH
T ss_pred hhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhh
Confidence 12345666666666555544433221 2477877777764 56899999999998863221 10 00111
Q ss_pred --HHHHHHhc--------CCChHHHHHHHHHhHHHHHhhhCH----------HHHHHhhhHHHHHhccCCcHHHHHHHHH
Q 009975 216 --VPAYVRLL--------RDNEAEVRIAAAGKVTKFCRILNP----------ELAIQHILPCVKELSSDSSQHVRSALAS 275 (521)
Q Consensus 216 --~~~l~~~l--------~d~~~~vr~~a~~~l~~l~~~~~~----------~~~~~~~~~~l~~~~~d~~~~vr~~~~~ 275 (521)
+..+.+.. .|++.++++...+.+..++..+.. ......+++.+..+..+++..+-..++.
T Consensus 294 ~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~ 373 (1204)
T 3a6p_A 294 VAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQM 373 (1204)
T ss_dssp HHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHH
Confidence 11222222 233456666666666655532211 1123467888888888888888777776
Q ss_pred HHHcccccc--Ch-HH---HHHhHHHHHHH---hhc---CCC---------------------hHHHHHHHHHHHHhhhh
Q 009975 276 VIMGMAPLL--GK-DA---TIEQLLPIFLS---LLK---DEF---------------------PDVRLNIISKLDQVNQV 322 (521)
Q Consensus 276 ~l~~i~~~~--~~-~~---~~~~l~~~l~~---~l~---d~~---------------------~~vr~~a~~~l~~~~~~ 322 (521)
....+.+.. +. +. ....+++.+.. -++ +.+ .+.|+.....+..++..
T Consensus 374 fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v 453 (1204)
T 3a6p_A 374 TWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRL 453 (1204)
T ss_dssp HHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666554432 12 11 23344444422 111 100 12355555555555443
Q ss_pred hchhhHhhhHHHHHHHHhc-------------------------CCChHHHHHHHHHhHHHHhhh---C-hhhhHHHHHH
Q 009975 323 IGIDLLSQSLLPAIVELAE-------------------------DRHWRVRLAIIEYIPLLASQL---G-VGFFDDKLGA 373 (521)
Q Consensus 323 ~~~~~~~~~~~~~l~~~~~-------------------------~~~~~vr~~~~~~l~~l~~~~---~-~~~~~~~l~~ 373 (521)
.+...+ ..+.+.+.+.+. ++.|....+....+..+.+.+ . .+.....+.|
T Consensus 454 ~p~~~l-~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~ 532 (1204)
T 3a6p_A 454 DPKTSF-QMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGI 532 (1204)
T ss_dssp CHHHHH-HHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHH
T ss_pred CHHHHH-HHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHH
Confidence 332222 444455544322 223455556555565555544 1 1111112334
Q ss_pred HHHHH-c--CCCcHHHHHHHHHHHHHHHHHhCHH-HHHhhhHHHHHhhhcC------------cchHHHHHHHHHHHHhh
Q 009975 374 LCMQW-L--QDKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINN------------PHYLYRMTILRAISLLA 437 (521)
Q Consensus 374 ~l~~~-l--~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~~------------~~~~~r~~a~~~l~~l~ 437 (521)
.++.. + +..++.+|..++.+++.+...+... .+...++..+...+.+ .+..+|.+|+.++..++
T Consensus 533 ~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~ 612 (1204)
T 3a6p_A 533 ELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMC 612 (1204)
T ss_dssp HHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHH
Confidence 44433 2 3467889999999999887765421 1233444445544433 34589999999999999
Q ss_pred cccChHH--HhhcHHHHHHhhcCCC---CchHHHHHHHHHHHHHhhhc
Q 009975 438 PVMGSEI--TCSRLLPVVINASKDR---VPNIKFNVAKVLQSLIPIVD 480 (521)
Q Consensus 438 ~~~~~~~--~~~~il~~l~~~l~d~---~~~VR~~a~~~l~~~~~~~~ 480 (521)
..++... +.+.+...+...+... ...=+.....++..++..++
T Consensus 613 ~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~ 660 (1204)
T 3a6p_A 613 RDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFK 660 (1204)
T ss_dssp HHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGC
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCC
Confidence 8776532 3455555555555422 24445566677777655443
No 97
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=99.02 E-value=9.7e-09 Score=95.89 Aligned_cols=255 Identities=12% Similarity=0.095 Sum_probs=148.4
Q ss_pred HHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhH
Q 009975 98 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL 177 (521)
Q Consensus 98 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 177 (521)
+...+..-+-|+.|++|+.|+-+|..+.+..+...-.. -..+.+-.+|..++-++..++.++++.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~--------~~~N~DLAvRLLCVLALDRFGDYVSDq------- 239 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ--------IRVDSKLFSKIYEILVTDKFNDFVDDR------- 239 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC--------CCCCTTHHHHHHHHHHHBCCBBCSSSS-------
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee--------ccccHHHHHHHHHHHHhccccccccCe-------
Confidence 55666666678899999999999999998866311000 001112344444444444333332221
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHH
Q 009975 178 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 257 (521)
Q Consensus 178 ~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 257 (521)
.-..||..++++++.+ ..++++ -.++..++..+..+.|+||.+++-.+.-+...+.. .+.+++.
T Consensus 240 ---------VVAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~a 303 (800)
T 3oc3_A 240 ---------TVAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRK 303 (800)
T ss_dssp ---------CBCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHH
T ss_pred ---------eeeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHH
Confidence 2335888888888877 555555 23444444555677788888887777766443332 4567777
Q ss_pred HHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCC--ChHHHHHHHHHHHHhhhhhchhhHhhhHHHH
Q 009975 258 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 335 (521)
Q Consensus 258 l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 335 (521)
+...+.|.+..||..++.++..++ .+ ...+.++..+-.++.+. -..--...+.-|+.++..-......+.++|.
T Consensus 304 VL~GL~D~DDDVRAVAAetLiPIA--~p--~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPR 379 (800)
T 3oc3_A 304 LVSLLSSPDEDIKLLSAELLCHFP--IT--DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKD 379 (800)
T ss_dssp HHHHTTCSSHHHHHHHHHHHTTSC--CS--STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGG
T ss_pred HHhhcCCcccHHHHHHHHHhhhhc--ch--hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHH
Confidence 777788888888888888887777 11 11233444443333322 1111222233333333221110111356676
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHH-HHHHcCCCcHHHHHHHHHHHH
Q 009975 336 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL-CMQWLQDKVYSIRDAAANNLK 395 (521)
Q Consensus 336 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~-l~~~l~d~~~~vr~~a~~~l~ 395 (521)
+..++.+.-..||.++++++..+. ...++.+ +.+.+-+++.+++..+.+.+.
T Consensus 380 L~PFLRHtITSVR~AVL~TL~tfL--------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 380 IFPCFTSPVPEVRTSILNMVKNLS--------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp TGGGGTCSSHHHHHHHHHHTTTCC--------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHhhhcCCcHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 777778888888888888876665 1233333 345677888888888887774
No 98
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.00 E-value=1.5e-08 Score=91.38 Aligned_cols=183 Identities=11% Similarity=0.062 Sum_probs=126.0
Q ss_pred HHHhcCCChHHHHHHHHHhHHHHHhhhCHHHH-------HHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChH----
Q 009975 219 YVRLLRDNEAEVRIAAAGKVTKFCRILNPELA-------IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---- 287 (521)
Q Consensus 219 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-------~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~---- 287 (521)
+.+-+.+.+|..|..|++.+..+....+.... ...+.+.+...+.|.|..|...++.++..++..++..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 44556666677777666666655544322111 1224556667777888888888877777776655432
Q ss_pred ----HHHHhHHHHHH-HhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhh
Q 009975 288 ----ATIEQLLPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 362 (521)
Q Consensus 288 ----~~~~~l~~~l~-~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~ 362 (521)
.....++|.+. +++.|..+.+|..+..++..++...+.. ..+++.+...+++++|++|..++.++..+...+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 12345667665 4588999999999999988877654322 345666777789999999999999999999888
Q ss_pred Chhh-----hHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHH
Q 009975 363 GVGF-----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 404 (521)
Q Consensus 363 ~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 404 (521)
|... ..+.+++.+..++.|.++.||.+|..+++.+...+|..
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 7643 23456677788899999999999999999999888853
No 99
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.94 E-value=2.8e-10 Score=89.88 Aligned_cols=119 Identities=19% Similarity=0.191 Sum_probs=62.1
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHh
Q 009975 213 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ 292 (521)
Q Consensus 213 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~ 292 (521)
..-.+.+...++|+++.+|..|+.+|+.+... . ++.+..+++|+++.||..++++++.+.. ..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--------~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~ 73 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE--------A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ER 73 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST--------T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HH
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--------H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HH
Confidence 34455566666666666666666666544321 1 2555555566666666666666666541 23
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhH
Q 009975 293 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 356 (521)
Q Consensus 293 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~ 356 (521)
.++.+...++|+++.||..|+.+++.+.. ...+|.+.+.++|+++.||..++.+|.
T Consensus 74 a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 74 AVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 35555556666666666666666665542 334555555555666666666655554
No 100
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.93 E-value=9.5e-09 Score=86.08 Aligned_cols=141 Identities=20% Similarity=0.230 Sum_probs=111.4
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHH-hcCCCChHHHHHHHHHHHHHHHHhCCCccc
Q 009975 134 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTR 212 (521)
Q Consensus 134 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~ 212 (521)
.++++++...+.+++.+.||..|+.+++.. . ....+++.+.. +..|++|.||..++..++.++...+++
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 678889999999999999999999988877 2 22568888887 889999999999999999998755544
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccC
Q 009975 213 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG 285 (521)
Q Consensus 213 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~ 285 (521)
..++.+...++|++..||.+|+...-..+.......-.+.++|.+..+..|++..||.+++.++..+++.-+
T Consensus 139 -~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 139 -KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp -TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred -HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 367889999999999999999887643332211112234578888888999999999999999988875443
No 101
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.92 E-value=2.7e-10 Score=89.90 Aligned_cols=121 Identities=16% Similarity=0.140 Sum_probs=81.8
Q ss_pred HHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhh
Q 009975 251 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ 330 (521)
Q Consensus 251 ~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 330 (521)
.....+.+..+++|+++.+|..++..++.+.. . . ++.+..+++|+++.||..|+.+++.+.. .
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~----~----~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~ 72 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD----E----A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------E 72 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS----T----T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------H
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc----h----H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------H
Confidence 34456777777888888888888777766542 1 1 4777888888888888888888888754 3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 009975 331 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKR 396 (521)
Q Consensus 331 ~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 396 (521)
..++.+...++|+++.||..++.+++.+.. +..+|.+...++|+++.||..|..+|+.
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 456777777788888888888888776531 3456777777888888888888877653
No 102
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.75 E-value=1.1e-06 Score=91.99 Aligned_cols=387 Identities=10% Similarity=0.004 Sum_probs=213.9
Q ss_pred CCChHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc------hhhHHHHHHHHHHhhc-CCChhHHHHHHHHHH
Q 009975 89 SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCA 161 (521)
Q Consensus 89 ~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~ 161 (521)
+..+...+.+.+.+..+..+++..-+..+++.++.++..... +..++.+.|++...+. +-+++.......++.
T Consensus 500 n~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~ 579 (997)
T 1vsy_5 500 GFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAW 579 (997)
T ss_dssp TTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 334445788999999999999988999999999988754321 3577889999999888 456655555555555
Q ss_pred HHhhhcChhhhhhhhHHHHHHh----c-CCCChHHHHHHHHHHHHHHHHhCCCcc-ccchHHHHHHhcCCChHHHHHHHH
Q 009975 162 ALGKLLEPQDCVAHILPVIVNF----S-QDKSWRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLRDNEAEVRIAAA 235 (521)
Q Consensus 162 ~l~~~~~~~~~~~~l~~~l~~~----~-~d~~~~vR~~~~~~l~~i~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~ 235 (521)
.+.....+. ...-++..+..+ . ++.+.-....-...+..+....+-... ...++..+. +..+...||++..
T Consensus 580 ~~~~~~Dpr-R~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig 656 (997)
T 1vsy_5 580 WLPAVVDLR-RSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVA 656 (997)
T ss_dssp HHHHHSCGG-GCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHH
T ss_pred HHhcCCChh-hhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHH
Confidence 555544332 112233333111 0 111111111112222222222221111 223333333 5556678888887
Q ss_pred HhHHHHHhhhC----------------------------HHHHHHhhhHHHHHh---cc---C--C-----cH--HHHHH
Q 009975 236 GKVTKFCRILN----------------------------PELAIQHILPCVKEL---SS---D--S-----SQ--HVRSA 272 (521)
Q Consensus 236 ~~l~~l~~~~~----------------------------~~~~~~~~~~~l~~~---~~---d--~-----~~--~vr~~ 272 (521)
..|..+....- +..+.+.+...+..+ .. + + +. ..-..
T Consensus 657 ~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kT 736 (997)
T 1vsy_5 657 KLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTST 736 (997)
T ss_dssp HHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHH
T ss_pred HHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHH
Confidence 77766555430 011111111111111 00 0 1 11 11223
Q ss_pred HHHHHHccccccChHHH---HH-hHHHHHHHhhcCCCh-HHHHH-HHHHHHHhhhhhchhhHhhhHHHHHHHHhc-CCCh
Q 009975 273 LASVIMGMAPLLGKDAT---IE-QLLPIFLSLLKDEFP-DVRLN-IISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHW 345 (521)
Q Consensus 273 ~~~~l~~i~~~~~~~~~---~~-~l~~~l~~~l~d~~~-~vr~~-a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~ 345 (521)
++.++............ .. .++|.++.+.++.+. +.... +...+..+....-+....+.++..+.+... +++|
T Consensus 737 vl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW 816 (997)
T 1vsy_5 737 IFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN 816 (997)
T ss_dssp HHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS
T ss_pred HHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH
Confidence 34333333221111111 11 255555555555543 44444 444455543322222222455555555555 6899
Q ss_pred HHHHHHHHHhHHHHhh----hChhhhHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcC
Q 009975 346 RVRLAIIEYIPLLASQ----LGVGFFDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 420 (521)
Q Consensus 346 ~vr~~~~~~l~~l~~~----~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~ 420 (521)
.|..++..+..+.-. ++.+. ...+...+..+|.|+. .+||+.|..+|+.++...+.....+.++..+.+.+..
T Consensus 817 -~R~~~L~~lq~~~f~n~f~l~~~~-~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~ 894 (997)
T 1vsy_5 817 -QTKLQLAFIQHFLSAELLQLTEEE-KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDV 894 (997)
T ss_dssp -SHHHHHHHHHHHHHHHTTTSCTTH-HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTT
T ss_pred -HHHHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 999998887665421 12222 3567888899999999 9999999999999987652322233455555554422
Q ss_pred ------------cchHHHHHHHHHHHHhhcccCh----HHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch
Q 009975 421 ------------PHYLYRMTILRAISLLAPVMGS----EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 481 (521)
Q Consensus 421 ------------~~~~~r~~a~~~l~~l~~~~~~----~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~ 481 (521)
.+-..|.+++-.+++++..++- +.+.+.++..+-....|+.+ |+.++-++++.+-..-..
T Consensus 895 ~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D 970 (997)
T 1vsy_5 895 NKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRAD 970 (997)
T ss_dssp TSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTST
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccch
Confidence 1226788999999999975542 34566677777777788654 999999999998765433
No 103
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.70 E-value=1.7e-06 Score=72.64 Aligned_cols=138 Identities=9% Similarity=0.116 Sum_probs=79.7
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHHHHhCHHHHHh
Q 009975 330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ-WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ 408 (521)
Q Consensus 330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 408 (521)
+.+++....+.+++...+|..++..++.. . ..+.+++.+.. +..|+++.||..+..+++.++...++ +
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p----e 138 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY----K 138 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT----T
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH----H
Confidence 44555556666666666666666654444 1 11345555555 55566666666666666666543332 2
Q ss_pred hhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 009975 409 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 478 (521)
Q Consensus 409 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~ 478 (521)
..++.+.....|+|..+|..|.+...-.+.........+.++|.+-.+..|++..||.+..+.|..+.+.
T Consensus 139 ~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 139 KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 3455555666666666666666554332221111112345777777778888888888888888777765
No 104
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=98.37 E-value=0.00029 Score=65.52 Aligned_cols=254 Identities=14% Similarity=0.065 Sum_probs=147.8
Q ss_pred HHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChH
Q 009975 228 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPD 307 (521)
Q Consensus 228 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~ 307 (521)
...+..|...+..+....+.- .+..+..+..+++|.+..||..++..++.++.. .....+..++.++++.+++.
T Consensus 42 ~k~K~LaaQ~I~kffk~FP~l--~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~~ 115 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFPEL--ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDSA 115 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCGGG--HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccchH
Confidence 567777777777777766542 245567777888888888888888888888765 33567788888888888877
Q ss_pred HHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhh----hHHHHHHHHHHHcCCCc
Q 009975 308 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQWLQDKV 383 (521)
Q Consensus 308 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~ 383 (521)
.+..+-.+|..+.+.-....+ ..++. ++.+ .+..+|..++..|..-...++.+. ....+...+.+.++|-.
T Consensus 116 E~~~V~~sL~sllk~Dpk~tl-~~lf~---~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT 190 (507)
T 3u0r_A 116 EFNLVNNALLSIFKMDAKGTL-GGLFS---QILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVT 190 (507)
T ss_dssp HHHHHHHHHHHHHHHCHHHHH-HHHHH---HHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHhcChHHHH-HHHHH---HHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhcccc
Confidence 777777777777664332222 22222 2222 356888888888776666555543 34556666677777654
Q ss_pred HHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhh------cCcchHHHHHHHHHHHHhh----cccChHHHhhcHHHHH
Q 009975 384 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI------NNPHYLYRMTILRAISLLA----PVMGSEITCSRLLPVV 453 (521)
Q Consensus 384 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l------~~~~~~~r~~a~~~l~~l~----~~~~~~~~~~~il~~l 453 (521)
.+-=...+..|+.+ +.++.....+++++.+.+.. ...+...-...+.++.... .......|..++...+
T Consensus 191 ~~EF~L~m~lL~~l-kl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kI 269 (507)
T 3u0r_A 191 GEEFVLFMKILSGL-KSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQV 269 (507)
T ss_dssp HHHHHHHHHHHHTS-GGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc-ccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhh
Confidence 33222222333221 12222223455666665532 1123333233334444433 3334444555555556
Q ss_pred HhhcCCCCc-----hHHHHHHHHHHHHHhhhchHHHHhhHHHHHH
Q 009975 454 INASKDRVP-----NIKFNVAKVLQSLIPIVDQSMVEKTIRPCLV 493 (521)
Q Consensus 454 ~~~l~d~~~-----~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~ 493 (521)
+..+++-.. ..|...++++..++...+........+|.+.
T Consensus 270 lP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy 314 (507)
T 3u0r_A 270 LPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLF 314 (507)
T ss_dssp GGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHH
T ss_pred ccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHH
Confidence 666655433 3799999999999998873332233333333
No 105
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.34 E-value=5.8e-06 Score=86.63 Aligned_cols=379 Identities=12% Similarity=0.014 Sum_probs=200.6
Q ss_pred chhHHhhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcC------hhHHHHhHHHHHHHhhcCC-CCcch--hhhhhhhhh
Q 009975 15 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMR------ESDLVDWYIPLVKRLAAGE-WFTAR--VSACGLFHI 85 (521)
Q Consensus 15 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~------~~~~~~~l~p~i~~~~~~~-~~~~r--~~~~~~~~~ 85 (521)
+...+.+.+.++.+..+++..-...|++.++.++.... -+..++.+.|++.....++ ..+.. +..+- ..
T Consensus 503 ~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i--~~ 580 (997)
T 1vsy_5 503 ELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLA--WW 580 (997)
T ss_dssp CCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHH--HH
T ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHH--HH
Confidence 56678899999999999999889999999998887642 2457789999998877732 22211 22211 11
Q ss_pred hcCCCChHHHHHHHHHHHH----h-cCCCChHHHHHHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcCCChhHHHHHHH
Q 009975 86 AYPSAPDILKTELRSIYTQ----L-CQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVE 158 (521)
Q Consensus 86 ~~~~~~~~~~~~l~~~l~~----l-~~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~ 158 (521)
+....++....-++..+.. + ..+.+......-...|..+....+- .. ...++..+. ++.+...||.....
T Consensus 581 ~~~~~DprR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~-~~~~l~~~~--l~h~y~~VRe~Ig~ 657 (997)
T 1vsy_5 581 LPAVVDLRRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD-VGKLFDELV--FDHPYDQVRQAVAK 657 (997)
T ss_dssp HHHHSCGGGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC-CHHHHHHCC--SCCSCHHHHHHHHH
T ss_pred HhcCCChhhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc-HHHHHHHHH--hCCChHHHHHHHHH
Confidence 1112233323444444422 1 1112222222222333333322221 11 223333333 45566778887777
Q ss_pred HHHHHhhhcCh----------------------------hhhhhhhHHHHHHhc---C---C--C-----ChHH--HHHH
Q 009975 159 GCAALGKLLEP----------------------------QDCVAHILPVIVNFS---Q---D--K-----SWRV--RYMV 195 (521)
Q Consensus 159 ~l~~l~~~~~~----------------------------~~~~~~l~~~l~~~~---~---d--~-----~~~v--R~~~ 195 (521)
++..+....-. +.....+..++..+- . + + +... -+.+
T Consensus 658 ~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTv 737 (997)
T 1vsy_5 658 LLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTI 737 (997)
T ss_dssp HHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHH
T ss_pred HHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHH
Confidence 77766554310 000001111111111 1 1 1 1111 1122
Q ss_pred HHHHHHHHHHhCCC-------ccccchHHHHHHhcCCChH-HHHHH-HHHhHHHHHhhhCHHHHHHhhhHHHHHhcc-CC
Q 009975 196 ANQLYELCEAVGPE-------PTRMDLVPAYVRLLRDNEA-EVRIA-AAGKVTKFCRILNPELAIQHILPCVKELSS-DS 265 (521)
Q Consensus 196 ~~~l~~i~~~~~~~-------~~~~~l~~~l~~~l~d~~~-~vr~~-a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~-d~ 265 (521)
+..+. ..++.. .....++|.+..+.++.+. ++... |..++..++...-+....+.++..+.+... ++
T Consensus 738 l~wl~---~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~ 814 (997)
T 1vsy_5 738 FYWIK---EMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALS 814 (997)
T ss_dssp HHHHH---HHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSC
T ss_pred HHHHH---HHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 22222 222211 0112266666666666654 55555 555666655443333444556666666665 68
Q ss_pred cHHHHHHHHHHHHcccc----ccChHHHHHhHHHHHHHhhcCCC-hHHHHHHHHHHHHhhhhhch-hhHhhhHHHHHHHH
Q 009975 266 SQHVRSALASVIMGMAP----LLGKDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGI-DLLSQSLLPAIVEL 339 (521)
Q Consensus 266 ~~~vr~~~~~~l~~i~~----~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~-~~~~~~~~~~l~~~ 339 (521)
+| .|.+++..+..+.- .+.++. ...+...+..++.|+. .|||..|..+|+.++...+. ... ..++..+.+.
T Consensus 815 sW-~R~~~L~~lq~~~f~n~f~l~~~~-~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~-~~li~~f~~~ 891 (997)
T 1vsy_5 815 SN-QTKLQLAFIQHFLSAELLQLTEEE-KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPL-LSLIERFAKG 891 (997)
T ss_dssp SS-SHHHHHHHHHHHHHHHTTTSCTTH-HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHH-HHHHHHHTTS
T ss_pred cH-HHHHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhH-HHHHHHHHHH
Confidence 99 99998777655421 123332 3578899999999999 99999999999999876522 222 3444444443
Q ss_pred hcC------------CChHHHHHHHHHhHHHHhhhChh----hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCH
Q 009975 340 AED------------RHWRVRLAIIEYIPLLASQLGVG----FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 403 (521)
Q Consensus 340 ~~~------------~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 403 (521)
... ++-..|-+++-.|+.+...++-+ .+.+.++..+-....|+.+ ++.++-++++.+-++-..
T Consensus 892 ~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D 970 (997)
T 1vsy_5 892 LDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRAD 970 (997)
T ss_dssp STTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTST
T ss_pred HhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccch
Confidence 311 11134556666777777666544 2344444444445566444 777777777777665544
Q ss_pred HH
Q 009975 404 EW 405 (521)
Q Consensus 404 ~~ 405 (521)
.|
T Consensus 971 ~W 972 (997)
T 1vsy_5 971 TW 972 (997)
T ss_dssp TH
T ss_pred hH
Confidence 44
No 106
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=98.22 E-value=0.00091 Score=62.27 Aligned_cols=242 Identities=11% Similarity=0.100 Sum_probs=148.3
Q ss_pred ChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChH
Q 009975 149 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA 228 (521)
Q Consensus 149 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~ 228 (521)
+...+..|.+.+....+.++. ....-+..+..+|+|.+..||..+++.|..+++. ...+.+..++.++++.+++
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~--l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~ 114 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPE--LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDS 114 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGG--GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCH
T ss_pred CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccch
Confidence 577788999999999988854 5567788889999999999999999999988754 3357889999999998887
Q ss_pred HHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHccccccCh----HHHHHhHHHHHHHhhcCC
Q 009975 229 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----DATIEQLLPIFLSLLKDE 304 (521)
Q Consensus 229 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~----~~~~~~l~~~l~~~l~d~ 304 (521)
.-+...-++|..+... .+......++..+.. .++.+|.-++..+..-...++. ....+.+...+.+.++|-
T Consensus 115 ~E~~~V~~sL~sllk~-Dpk~tl~~lf~~i~~----~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DV 189 (507)
T 3u0r_A 115 AEFNLVNNALLSIFKM-DAKGTLGGLFSQILQ----GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDV 189 (507)
T ss_dssp HHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhc-ChHHHHHHHHHHHcc----cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccc
Confidence 7777777788777764 333333333333333 3578888888887654433333 334556777888888776
Q ss_pred ChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhc------CCChHHHHHHHH----HhHHHHhhhChhhhHHHHHHH
Q 009975 305 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE------DRHWRVRLAIIE----YIPLLASQLGVGFFDDKLGAL 374 (521)
Q Consensus 305 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~vr~~~~~----~l~~l~~~~~~~~~~~~l~~~ 374 (521)
..+-=.-.+..|..+- ..+.-.-.+.+++.+.+..+ ..+...-...+. ++..+.+......|..++..-
T Consensus 190 T~~EF~L~m~lL~~lk-l~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~k 268 (507)
T 3u0r_A 190 TGEEFVLFMKILSGLK-SLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQ 268 (507)
T ss_dssp CHHHHHHHHHHHHTSG-GGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcc-cccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHh
Confidence 5433222333332211 11100112455666655421 123332233333 333344444444444444444
Q ss_pred HHHHcCCCc-----HHHHHHHHHHHHHHHHHhC
Q 009975 375 CMQWLQDKV-----YSIRDAAANNLKRLAEEFG 402 (521)
Q Consensus 375 l~~~l~d~~-----~~vr~~a~~~l~~l~~~~~ 402 (521)
++..+++-. .+.+...+++++.++...|
T Consensus 269 IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~ 301 (507)
T 3u0r_A 269 VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG 301 (507)
T ss_dssp TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred hccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence 433444322 2367778899999998887
No 107
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.18 E-value=0.00051 Score=67.04 Aligned_cols=296 Identities=11% Similarity=0.096 Sum_probs=171.6
Q ss_pred HhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhcChh------------
Q 009975 104 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQ------------ 170 (521)
Q Consensus 104 ~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~------------ 170 (521)
.+.+..-.+=|+.|+..|..+++....+.-...+-+++..+-+|. +..+-..+.++|..+...-+.+
T Consensus 29 Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~ 108 (651)
T 3grl_A 29 RVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSED 108 (651)
T ss_dssp HHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------C
T ss_pred HHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchH
Confidence 344455677788888888888776654433344444444444443 4455556677775554322110
Q ss_pred -------h--hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCc----c-ccchHHHHHHhcCCChHHHHHHHHH
Q 009975 171 -------D--CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----T-RMDLVPAYVRLLRDNEAEVRIAAAG 236 (521)
Q Consensus 171 -------~--~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~----~-~~~l~~~l~~~l~d~~~~vr~~a~~ 236 (521)
. ..+.-++.+..++++.+..+|..+++.|..++..-+... . .+.=++.++.+++|+...+|..++-
T Consensus 109 ~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneall 188 (651)
T 3grl_A 109 LGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVL 188 (651)
T ss_dssp HHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHH
Confidence 0 123357888889999999999999999999886544311 1 2356789999999999999999999
Q ss_pred hHHHHHhhhCHH---HHHHhhhHHHHHhccCCc----HHHHHHHHHHHHcccccc--ChHHHHH-hHHHHHHHhhcCCCh
Q 009975 237 KVTKFCRILNPE---LAIQHILPCVKELSSDSS----QHVRSALASVIMGMAPLL--GKDATIE-QLLPIFLSLLKDEFP 306 (521)
Q Consensus 237 ~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~----~~vr~~~~~~l~~i~~~~--~~~~~~~-~l~~~l~~~l~d~~~ 306 (521)
.|..+...-..- ...+..++.+..++.... ..|-.-++..+..+.+.= ....+.+ ..+|.+..+++..++
T Consensus 189 LL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~ 268 (651)
T 3grl_A 189 LLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDE 268 (651)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSC
T ss_pred HHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCcc
Confidence 998887743211 112223444444443322 245555566666665442 2222332 345555666653321
Q ss_pred ------HHHHH---HHHHHHHhhhhhch---------hhHhhhHHHHHHHHhcCC--ChHHHHHHHHHhHHHHhhhCh--
Q 009975 307 ------DVRLN---IISKLDQVNQVIGI---------DLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGV-- 364 (521)
Q Consensus 307 ------~vr~~---a~~~l~~~~~~~~~---------~~~~~~~~~~l~~~~~~~--~~~vr~~~~~~l~~l~~~~~~-- 364 (521)
....+ ++..+..++..-+. ......+++.+.++.-.. ...+|..++.+++.+...-..
T Consensus 269 ~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q 348 (651)
T 3grl_A 269 NSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQ 348 (651)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 12222 23333333322111 112345677777765443 567888888888877654321
Q ss_pred hhhH----------HHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHH
Q 009975 365 GFFD----------DKLGALCMQWLQD-KVYSIRDAAANNLKRLAE 399 (521)
Q Consensus 365 ~~~~----------~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~ 399 (521)
+.|. +.++.+++.++.+ ....+|.+|+.++..+..
T Consensus 349 ~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 349 DYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp HHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 1111 2344555555655 458899999999988863
No 108
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.16 E-value=0.0014 Score=64.00 Aligned_cols=304 Identities=15% Similarity=0.178 Sum_probs=177.5
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhCCCc---
Q 009975 135 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP--- 210 (521)
Q Consensus 135 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~~~~~--- 210 (521)
+.+-.+..++.+..-..-|+.|+..|..+++..+.+....-+-+++..+-+| .+.++=+.+.+.+..+...-+.+.
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~ 100 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEE 100 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-------
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccc
Confidence 3444444455555555667778887877776654432222233333333333 344444445555543322111000
Q ss_pred ------------------cccchHHHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHH---HH--HhhhHHHHHhccCCcH
Q 009975 211 ------------------TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL---AI--QHILPCVKELSSDSSQ 267 (521)
Q Consensus 211 ------------------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~--~~~~~~l~~~~~d~~~ 267 (521)
..++-++.+..+++.++..+|..++..|..++..-+... +. +.-++.+..+++|+..
T Consensus 101 ~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE 180 (651)
T 3grl_A 101 NSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSRE 180 (651)
T ss_dssp -------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSH
T ss_pred cccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchH
Confidence 024568888999999999999999999999988754421 11 2357888999999999
Q ss_pred HHHHHHHHHHHccccccC---hHHHHHhHHHHHHHhhcCCCh----HHHHHHHHHHHHhhhhhc--hhhHh-hhHHHHHH
Q 009975 268 HVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFP----DVRLNIISKLDQVNQVIG--IDLLS-QSLLPAIV 337 (521)
Q Consensus 268 ~vr~~~~~~l~~i~~~~~---~~~~~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~~~~~~~--~~~~~-~~~~~~l~ 337 (521)
.+|..++-.+..+...-. +-...+..++.++.+++++.. .|...++..+..+.+.=. ...+. ...+|.+.
T Consensus 181 ~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~ 260 (651)
T 3grl_A 181 VIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMK 260 (651)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGG
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHH
Confidence 999999999988875432 222345678888888876654 777778888887765421 11121 23344444
Q ss_pred HHhcC----CChHHH--H---HHHHHhHHHHhhhCh---------hhhHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHH
Q 009975 338 ELAED----RHWRVR--L---AIIEYIPLLASQLGV---------GFFDDKLGALCMQWLQDK--VYSIRDAAANNLKRL 397 (521)
Q Consensus 338 ~~~~~----~~~~vr--~---~~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l 397 (521)
.+++. ..|.-+ . .++..+..+...-++ ..+...+++.+.+++..+ ...+|..|+.+++.+
T Consensus 261 ~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~ 340 (651)
T 3grl_A 261 PWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEV 340 (651)
T ss_dssp GGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred HHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 44431 234321 1 233344444332221 112223556666665433 577999999999988
Q ss_pred HHHhCH--HHHH----------hhhHHHHHhhhcCc-chHHHHHHHHHHHHhhc
Q 009975 398 AEEFGP--EWAM----------QHITPQVLEMINNP-HYLYRMTILRAISLLAP 438 (521)
Q Consensus 398 ~~~~~~--~~~~----------~~l~~~l~~~l~~~-~~~~r~~a~~~l~~l~~ 438 (521)
+..... +.+. ..++..+..++++. ...+|.+++.++..+..
T Consensus 341 irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 341 IRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp HTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 753311 1111 12444455556554 48899999999998874
No 109
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.13 E-value=0.00022 Score=61.20 Aligned_cols=186 Identities=15% Similarity=0.091 Sum_probs=113.3
Q ss_pred HHHHHHHhcCCCh--HHHHHHHHHhHHHHhhhCh---hhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC---HH
Q 009975 333 LPAIVELAEDRHW--RVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PE 404 (521)
Q Consensus 333 ~~~l~~~~~~~~~--~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~ 404 (521)
+|.+.+++.++++ .++..++..+..++..-.. .......+|.+..+|+.++.+++..|+.+|..+..... ..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4555555555444 5555555555544432111 11122356788888888888888888888888864211 11
Q ss_pred HHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhhcccC-hHHHhhcHHHHHHhhcC-------C---------CCchHHH
Q 009975 405 WAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINASK-------D---------RVPNIKF 466 (521)
Q Consensus 405 ~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~il~~l~~~l~-------d---------~~~~VR~ 466 (521)
......+|.|.+++. .+++.+++.++.++..++..-. ...+...-+|.+..++. + .++.|+.
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~ 169 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY 169 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHH
Confidence 123456888888886 4678888888888888875322 22233345666665432 1 2568999
Q ss_pred HHHHHHHHHHhhh--chHHHH--hhHHHHHHHhc------CCCCccHHHHHHHHHHHHHHhh
Q 009975 467 NVAKVLQSLIPIV--DQSMVE--KTIRPCLVELT------EDPDVDVRFFATQAIQSIDHVM 518 (521)
Q Consensus 467 ~a~~~l~~~~~~~--~~~~~~--~~~~~~l~~l~------~D~~~~vr~~a~~al~~l~~~~ 518 (521)
+|..+|..+...- ....+. .-+.+.|..++ .+.+...+.++..+|..|...+
T Consensus 170 na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~~ 231 (233)
T 3tt9_A 170 NVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQL 231 (233)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhh
Confidence 9999999987631 122222 23555555542 4457788899999998887654
No 110
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.11 E-value=0.0066 Score=61.88 Aligned_cols=185 Identities=12% Similarity=0.124 Sum_probs=103.4
Q ss_pred hhhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChhH--HHHh-HHHHHHHhhcCCCCcchhhhhhhhhhhcCCCChHHH-
Q 009975 20 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD--LVDW-YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK- 95 (521)
Q Consensus 20 ~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~--~~~~-l~p~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~- 95 (521)
.++|+++++ .++++..|..|+.++..+++.-.... ..+. +.+.+..+..|.+.++|..+.+.+..+......+..
T Consensus 35 ~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 578888774 56899999999999999997422221 2233 446677778888889999999988877654433322
Q ss_pred ----HHHHHHHHHhcCC---------C-----Ch-------HHHHHHHHhHHHHHHhhCc---hhhHHHHHHHHHH-hhc
Q 009975 96 ----TELRSIYTQLCQD---------D-----MP-------MVRRSAASNLGKFAATVEP---AHLKTDIMSIFED-LTQ 146 (521)
Q Consensus 96 ----~~l~~~l~~l~~~---------~-----~~-------~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~-l~~ 146 (521)
..+++.+..++.. . .. .+-..++..|..++..... .......++.+.. +..
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 2244544443311 0 11 1222344444555433221 1112233444433 333
Q ss_pred CC--ChhHHHHHHHHHHHHhhhcChh------hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 009975 147 DD--QDSVRLLAVEGCAALGKLLEPQ------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 206 (521)
Q Consensus 147 d~--~~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~ 206 (521)
.+ ...++..|..+|..+.+.-.+- .....++..+....++.+.. |..++-.+..+....
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~-~~la~giL~Ni~~~~ 260 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPR-AVMACGVLHNVFTSL 260 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTT-HHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHH-HHHHHHHHHhHhhhh
Confidence 22 3578999999999987653220 11123455555555554443 445555555555443
No 111
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.88 E-value=0.00025 Score=60.91 Aligned_cols=145 Identities=14% Similarity=0.062 Sum_probs=104.6
Q ss_pred HHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccC---h
Q 009975 371 LGALCMQWLQDKVY--SIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---S 442 (521)
Q Consensus 371 l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~---~ 442 (521)
-+|.+.++|+.+++ .++..|+.++..++..-.. .......+|.|.+++.+++..++..|++++..++..-. .
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 35777888887777 8888888888887753221 12335578999999999999999999999999986211 1
Q ss_pred HHHhhcHHHHHHhhcC-CCCchHHHHHHHHHHHHHhhhc-hHHHHhhHHHHHHHhcC-------C---------CCccHH
Q 009975 443 EITCSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVD-QSMVEKTIRPCLVELTE-------D---------PDVDVR 504 (521)
Q Consensus 443 ~~~~~~il~~l~~~l~-d~~~~VR~~a~~~l~~~~~~~~-~~~~~~~~~~~l~~l~~-------D---------~~~~vr 504 (521)
......-+|.++++|. .++..++..++.+|..+...-. ...+...-+|.|..+.. | .+.+|+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~ 168 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIF 168 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHH
Confidence 1233567899999997 4788999999999988875322 22233345666665431 1 366999
Q ss_pred HHHHHHHHHHH
Q 009975 505 FFATQAIQSID 515 (521)
Q Consensus 505 ~~a~~al~~l~ 515 (521)
.+|..++..|.
T Consensus 169 ~na~~~L~nLs 179 (233)
T 3tt9_A 169 YNVTGCLRNMS 179 (233)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 112
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=97.44 E-value=0.018 Score=61.62 Aligned_cols=170 Identities=9% Similarity=0.022 Sum_probs=108.2
Q ss_pred hhHHHHHHhcCC----CChHHHHHHHHHHHHHHHHhCCC--cc----ccchHHHHHHhcCCChHHHHHHHHHhHHHHHhh
Q 009975 175 HILPVIVNFSQD----KSWRVRYMVANQLYELCEAVGPE--PT----RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 244 (521)
Q Consensus 175 ~l~~~l~~~~~d----~~~~vR~~~~~~l~~i~~~~~~~--~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 244 (521)
..+..+..++++ .++.+|..+.-+++.++.....+ .. ...+...+.+.+...+.+-+..++++|++++.-
T Consensus 391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p 470 (1056)
T 1lsh_A 391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP 470 (1056)
T ss_dssp HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh
Confidence 344445555544 56789999999999998754321 11 233444455555666677788899999998762
Q ss_pred hCHHHHHHhhhHHHHHhc-------cCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhh--cCCChHHHHHHHHH
Q 009975 245 LNPELAIQHILPCVKELS-------SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL--KDEFPDVRLNIISK 315 (521)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~-------~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~ 315 (521)
..++.+..++ .+...++|.+|+.++..+.... .+.+.+.+.+.+ .+.++++|..|+..
T Consensus 471 --------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-----p~~v~~il~~i~~n~~e~~EvRiaA~~~ 537 (1056)
T 1lsh_A 471 --------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-----PRKVQEIVLPIFLNVAIKSELRIRSCIV 537 (1056)
T ss_dssp --------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-----HHHHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred --------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-----hHHHHHHHHHHhcCCCCChHHHHHHHHH
Confidence 2233444433 2345689999999999887432 233556666666 55679999999888
Q ss_pred HHHhhhhhchhhHhhhHHHHHHH-HhcCCChHHHHHHHHHhHHHHhhhCh
Q 009975 316 LDQVNQVIGIDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGV 364 (521)
Q Consensus 316 l~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~~~ 364 (521)
+-..... ..++..+.. +..+++..|+..+...|..+++.-.+
T Consensus 538 Lm~t~P~-------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 538 FFESKPS-------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHTCCC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHCcC-------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 8654432 223444444 33567888888877777777665443
No 113
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=97.38 E-value=0.0084 Score=64.13 Aligned_cols=132 Identities=11% Similarity=-0.026 Sum_probs=86.6
Q ss_pred hhHHHHHHHHhcC----CChHHHHHHHHHhHHHHhhhC------hhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 009975 330 QSLLPAIVELAED----RHWRVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 399 (521)
Q Consensus 330 ~~~~~~l~~~~~~----~~~~vr~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 399 (521)
...+..+..++++ .++.+|..++-+++.++...- .....+.+...+.+.+...+.+-+..++++||.+..
T Consensus 390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence 3455555555544 467788888888888775431 112245566666677777777888888888887642
Q ss_pred HhCHHHHHhhhHHHHHhhhcC-------cchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhc--CCCCchHHHHHHH
Q 009975 400 EFGPEWAMQHITPQVLEMINN-------PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS--KDRVPNIKFNVAK 470 (521)
Q Consensus 400 ~~~~~~~~~~l~~~l~~~l~~-------~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l--~d~~~~VR~~a~~ 470 (521)
...++.+.+++.. ...++|.+|+.++..+.... ...+-+.+++.+ .+..++||.+|+.
T Consensus 470 --------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-----p~~v~~il~~i~~n~~e~~EvRiaA~~ 536 (1056)
T 1lsh_A 470 --------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-----PRKVQEIVLPIFLNVAIKSELRIRSCI 536 (1056)
T ss_dssp --------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-----HHHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred --------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-----hHHHHHHHHHHhcCCCCChHHHHHHHH
Confidence 2355666666532 24589999999999987532 123455566665 4468899999988
Q ss_pred HHHH
Q 009975 471 VLQS 474 (521)
Q Consensus 471 ~l~~ 474 (521)
.|-.
T Consensus 537 ~Lm~ 540 (1056)
T 1lsh_A 537 VFFE 540 (1056)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8744
No 114
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=97.34 E-value=0.07 Score=49.12 Aligned_cols=200 Identities=13% Similarity=0.111 Sum_probs=125.2
Q ss_pred HHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHH
Q 009975 290 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD 369 (521)
Q Consensus 290 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~ 369 (521)
.+.++..+...-...+ +.+...+..+..++-.-.++.+ +.++|.+.++..|++..+|..+++.+...+.. ...+..
T Consensus 24 ~~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dpsLl-~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~ 99 (386)
T 3o2t_A 24 SERVVDLLNQAALITN-DSKITVLKQVQELIINKDPTLL-DNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLL 99 (386)
T ss_dssp HHHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCGGGG-GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHH
T ss_pred HHHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 3444454444333333 3566666666665443344433 78888888888888888888888888777753 233356
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh--------C------HHHH-HhhhHHHHHhhhcCcchHHHHHHHHHHH
Q 009975 370 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEF--------G------PEWA-MQHITPQVLEMINNPHYLYRMTILRAIS 434 (521)
Q Consensus 370 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--------~------~~~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~ 434 (521)
.+++.+..+++|.++.|.+.++.+...++... + ..|- ...+-..+.....+.+..+|..++.++.
T Consensus 100 ~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle 179 (386)
T 3o2t_A 100 KLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVE 179 (386)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 77888888888888888888888777776322 1 1111 2334445556667788999999999999
Q ss_pred HhhcccChH------------H--------------------HhhcHHHHHHhhcCCC--CchHHHHHHHHHHHHHhhhc
Q 009975 435 LLAPVMGSE------------I--------------------TCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVD 480 (521)
Q Consensus 435 ~l~~~~~~~------------~--------------------~~~~il~~l~~~l~d~--~~~VR~~a~~~l~~~~~~~~ 480 (521)
.++...... . -...++..++..+.++ ++..=.+++++|..++..
T Consensus 180 ~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~-- 257 (386)
T 3o2t_A 180 GLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQ-- 257 (386)
T ss_dssp HHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHh--
Confidence 887422100 0 0135667777777653 333344667777777763
Q ss_pred hHHHHhhHHHHHHHh
Q 009975 481 QSMVEKTIRPCLVEL 495 (521)
Q Consensus 481 ~~~~~~~~~~~l~~l 495 (521)
.+.+...+++.+..+
T Consensus 258 RP~~~~rIl~aL~~l 272 (386)
T 3o2t_A 258 RPMFMSEVIQAYETL 272 (386)
T ss_dssp SGGGHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhh
Confidence 233456777777765
No 115
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.04 E-value=0.0097 Score=60.67 Aligned_cols=87 Identities=14% Similarity=0.135 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhcccCh---HHHhhcHHHHHHhhcCC---CCchHHHHHHHHHHHHHhhhchH--HHH----hhHHHHHHH
Q 009975 427 MTILRAISLLAPVMGS---EITCSRLLPVVINASKD---RVPNIKFNVAKVLQSLIPIVDQS--MVE----KTIRPCLVE 494 (521)
Q Consensus 427 ~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~d---~~~~VR~~a~~~l~~~~~~~~~~--~~~----~~~~~~l~~ 494 (521)
..++.++..++..-.. .......+|.++..+.+ ....++..++.+|..+......- .+. ..+...+..
T Consensus 158 ~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~ 237 (684)
T 4gmo_A 158 GSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLK 237 (684)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHH
Confidence 3445555555542211 11223456666665532 24579999999999987642210 111 234444444
Q ss_pred hcCCCCccHHHHHHHHHHHH
Q 009975 495 LTEDPDVDVRFFATQAIQSI 514 (521)
Q Consensus 495 l~~D~~~~vr~~a~~al~~l 514 (521)
+.++.+.. |..++..+..+
T Consensus 238 ~~~~~~~~-~~la~giL~Ni 256 (684)
T 4gmo_A 238 LATGTDPR-AVMACGVLHNV 256 (684)
T ss_dssp HHHSSCTT-HHHHHHHHHHH
T ss_pred HhcCCcHH-HHHHHHHHHhH
Confidence 44444433 44555555444
No 116
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.97 E-value=0.16 Score=44.04 Aligned_cols=129 Identities=14% Similarity=0.222 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHH
Q 009975 307 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 386 (521)
Q Consensus 307 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v 386 (521)
+.+...+.....++-.-.+. +.+.+++.+.++..+++..+|..+++.+...++. +..+....++.+..+++|+++.|
T Consensus 30 ~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V 106 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQV 106 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHH
Confidence 45555555555543332333 3356666666666667777777777776666533 23345566677777777777777
Q ss_pred HHHHHHHHHHHHHHh-------CH-------HH-HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhc
Q 009975 387 RDAAANNLKRLAEEF-------GP-------EW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAP 438 (521)
Q Consensus 387 r~~a~~~l~~l~~~~-------~~-------~~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~ 438 (521)
.+.++.+...++... +. .| ....+-..+.....+.+..+|..++.++..+..
T Consensus 107 ~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 107 IKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 777776666665422 10 11 113344445556667788888888888888774
No 117
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.96 E-value=0.23 Score=45.71 Aligned_cols=112 Identities=13% Similarity=0.085 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhc------
Q 009975 94 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL------ 167 (521)
Q Consensus 94 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~------ 167 (521)
...++++.+.++..+.+..||+..+.-|...+.. ..+....+++.+..++.|++..|.+.++.+...+.+..
T Consensus 60 Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~ 137 (386)
T 3o2t_A 60 LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVK 137 (386)
T ss_dssp GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666666666666666666666666665542 22334555666666666666666666665555554321
Q ss_pred -Ch-----hhhhhh---hHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC
Q 009975 168 -EP-----QDCVAH---ILPVIVNFSQDKSWRVRYMVANQLYELCEAVG 207 (521)
Q Consensus 168 -~~-----~~~~~~---l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~ 207 (521)
+. +..|.. +...+....++.+..||-.+++.+..++-...
T Consensus 138 ~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS 186 (386)
T 3o2t_A 138 SRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLS 186 (386)
T ss_dssp C-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTS
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhC
Confidence 00 122222 33445556677888999999998888876543
No 118
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.59 E-value=0.31 Score=42.15 Aligned_cols=114 Identities=14% Similarity=0.145 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhc----
Q 009975 92 DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL---- 167 (521)
Q Consensus 92 ~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~---- 167 (521)
+....++++.+..+..+.+..+|+..+.-+...+.. ........++.+..+++|+++.|.+.++.+...+.+..
T Consensus 48 p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i 125 (257)
T 3gs3_A 48 AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYL 125 (257)
T ss_dssp GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888888888888999888888877643 34567778888888888888888888888777765542
Q ss_pred ---Ch-----hhhhhh---hHHHHHHhcCCCChHHHHHHHHHHHHHHHHhC
Q 009975 168 ---EP-----QDCVAH---ILPVIVNFSQDKSWRVRYMVANQLYELCEAVG 207 (521)
Q Consensus 168 ---~~-----~~~~~~---l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~ 207 (521)
+. +..|.. +...+....++.+..+|-.+++-+..++-...
T Consensus 126 ~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT 176 (257)
T 3gs3_A 126 CSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQS 176 (257)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTS
T ss_pred hcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhc
Confidence 11 223332 44456666778899999999999988875443
No 119
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=96.58 E-value=0.15 Score=41.85 Aligned_cols=142 Identities=12% Similarity=0.138 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcC------CChHHHHHHHHHhHHHHhh--hChhhhHHHHHHHHHHH
Q 009975 307 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED------RHWRVRLAIIEYIPLLASQ--LGVGFFDDKLGALCMQW 378 (521)
Q Consensus 307 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~vr~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~ 378 (521)
..|..|++++..-. |. ..++|.+..++.+ .+...-...++....+..+ +.-+.+...++|.++++
T Consensus 23 ~~r~~aL~sL~~D~---gL----~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC 95 (196)
T 4atg_A 23 DMKDIAIECLEKES---GL----QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC 95 (196)
T ss_dssp TTHHHHHHHHHHCS---SC----TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC---Ch----hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence 34666666665532 21 4566666654422 2445445555555555544 23456777788888877
Q ss_pred cCC---CcHHHHHHHHHHHHHHHHHhCH--HHHHhhhHHHHHhhhcCc--chHHHHHHHHHHHHhhcccChHHHhhcHHH
Q 009975 379 LQD---KVYSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLP 451 (521)
Q Consensus 379 l~d---~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~~~~~~~~~~il~ 451 (521)
+-. ....+|..|+..++.++..+|. ......+...+.+.+.|+ +...+..|+..+..+ |.+.+..-++|
T Consensus 96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l----G~~~vr~~llP 171 (196)
T 4atg_A 96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL----SKNVVNTVIRE 171 (196)
T ss_dssp HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----CHHHHHTHHHH
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh----HHHHHHHhhhc
Confidence 521 1228999999999999999876 334566777777777665 467778888887766 55666666667
Q ss_pred HHHhhcCC
Q 009975 452 VVINASKD 459 (521)
Q Consensus 452 ~l~~~l~d 459 (521)
.+-...++
T Consensus 172 ~l~~~~~~ 179 (196)
T 4atg_A 172 HAEEYKRT 179 (196)
T ss_dssp HHHHHHHH
T ss_pred CHHHHHHH
Confidence 77655543
No 120
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.25 E-value=0.92 Score=37.15 Aligned_cols=158 Identities=12% Similarity=0.045 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCC--ChhHHHHHHHHHHHHhhh--cChh
Q 009975 95 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD--QDSVRLLAVEGCAALGKL--LEPQ 170 (521)
Q Consensus 95 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~--~~~vr~~a~~~l~~l~~~--~~~~ 170 (521)
.+..+..+.+.+.+ ..|+.|.+.|.. .-+-....+.+..++.+..... +...-...+++..++..+ +.-+
T Consensus 9 lq~yf~~It~a~~~---~~r~~aL~sL~~---D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~le 82 (196)
T 4atg_A 9 LQLYFDKILSMIKS---DMKDIAIECLEK---ESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFID 82 (196)
T ss_dssp HHHHHHHHHHHHTS---TTHHHHHHHHHH---CSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCG
T ss_pred HHHHHHHHHHHHHh---HHHHHHHHHHhc---CCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChH
Confidence 44555566655554 457666655543 3332334444444444333222 333334445555555544 2224
Q ss_pred hhhhhhHHHHHHhcC--C-CChHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCh--HHHHHHHHHhHHHHHh
Q 009975 171 DCVAHILPVIVNFSQ--D-KSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNE--AEVRIAAAGKVTKFCR 243 (521)
Q Consensus 171 ~~~~~l~~~l~~~~~--d-~~~~vR~~~~~~l~~i~~~~~~~~--~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~ 243 (521)
.+...++|.+..++- . ....+|..+++.++.+++.++... ..+.+...+.+.+.|++ ......|+..|..+
T Consensus 83 pYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l-- 160 (196)
T 4atg_A 83 PYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL-- 160 (196)
T ss_dssp GGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh--
Confidence 566677777766442 1 122799999999999999888642 23566677777777754 56677777777665
Q ss_pred hhCHHHHHHhhhHHHHHhc
Q 009975 244 ILNPELAIQHILPCVKELS 262 (521)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~~ 262 (521)
|++.+...++|.+....
T Consensus 161 --G~~~vr~~llP~l~~~~ 177 (196)
T 4atg_A 161 --SKNVVNTVIREHAEEYK 177 (196)
T ss_dssp --CHHHHHTHHHHHHHHHH
T ss_pred --HHHHHHHhhhcCHHHHH
Confidence 44555455667765554
No 121
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.96 E-value=1.9 Score=38.48 Aligned_cols=205 Identities=12% Similarity=0.147 Sum_probs=131.3
Q ss_pred HHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhh-chh-----hH--hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHh
Q 009975 289 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GID-----LL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 360 (521)
Q Consensus 289 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~-----~~--~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~ 360 (521)
+.++++..+...+..-+.+.|+.+...+..+...- |.. -+ ...++..+....++++-.. ..|.+..
T Consensus 75 ~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl------~~G~mLR 148 (341)
T 1upk_A 75 YNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIAL------NCGIMLR 148 (341)
T ss_dssp HHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHH------HHHHHHH
T ss_pred HHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHh------HHHHHHH
Confidence 35677888888888888888888888877765431 110 00 1344555555444433211 1122221
Q ss_pred hh-ChhhhHHHH-----HHHHHHHcCCCcHHHHHHHHHHHHHHHHHh---CHHHH---HhhhHHHHHhhhcCcchHHHHH
Q 009975 361 QL-GVGFFDDKL-----GALCMQWLQDKVYSIRDAAANNLKRLAEEF---GPEWA---MQHITPQVLEMINNPHYLYRMT 428 (521)
Q Consensus 361 ~~-~~~~~~~~l-----~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~---~~~l~~~l~~~l~~~~~~~r~~ 428 (521)
.+ .-+.+...+ .--++.+++.++.+|-.-|+..+..+.... -.+++ -+.++..+..++.++||-.|..
T Consensus 149 ecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ 228 (341)
T 1upk_A 149 ECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ 228 (341)
T ss_dssp HHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence 11 111112222 224567888999999888888888776432 11222 1456777788999999999999
Q ss_pred HHHHHHHhhcccChHHH------hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch-H-------HHHhhHHHHHHH
Q 009975 429 ILRAISLLAPVMGSEIT------CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-S-------MVEKTIRPCLVE 494 (521)
Q Consensus 429 a~~~l~~l~~~~~~~~~------~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~-~-------~~~~~~~~~l~~ 494 (521)
++..+|.+...=....+ .+.-+..++.+|+|+..+|+..|..++..++..-.. + ...+.++..+.+
T Consensus 229 SlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~ 308 (341)
T 1upk_A 229 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSK 308 (341)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHh
Confidence 99999999852111111 256788899999999999999999999988753211 1 123778888888
Q ss_pred hcCCC
Q 009975 495 LTEDP 499 (521)
Q Consensus 495 l~~D~ 499 (521)
+..|+
T Consensus 309 f~~d~ 313 (341)
T 1upk_A 309 FQNDR 313 (341)
T ss_dssp TTTTC
T ss_pred CCCCC
Confidence 88887
No 122
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=94.62 E-value=0.33 Score=37.64 Aligned_cols=76 Identities=9% Similarity=0.083 Sum_probs=59.6
Q ss_pred HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH----hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH
Q 009975 407 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 482 (521)
Q Consensus 407 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~ 482 (521)
....+..+...++++++.+...|+..+..+.+.+|..+. ...++..+..++...++.||...+..+......+..+
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 455677788888888889999999999999998887654 2567777777776678899999999998888776543
No 123
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=93.48 E-value=2.9 Score=35.28 Aligned_cols=132 Identities=6% Similarity=-0.031 Sum_probs=89.8
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCCCccccchHH
Q 009975 139 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVP 217 (521)
Q Consensus 139 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~ 217 (521)
.++..+..++....|..|+..+......+.+ .-++.+..++. -.+|.+--..+.+++.+... .+..+.+
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~-----~~~~~~~ 127 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-----HLTELPT 127 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-----SGGGHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-----ChHHHHH
Confidence 5666677777788899998888876544332 33445555554 47888877777667766543 2334678
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHcccccc
Q 009975 218 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 284 (521)
Q Consensus 218 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~ 284 (521)
.+.+...|++.-+|..|+.++-.... +...+.+++.+..+..|++..||.+..+++..++...
T Consensus 128 ~i~~W~~s~~~w~rR~ai~~~l~~~~----~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~ 190 (220)
T 2b6c_A 128 IFALFYGAENFWNRRVALNLQLMLKE----KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTN 190 (220)
T ss_dssp HHHHHTTCSSHHHHHHHHHTTTTCGG----GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhC
Confidence 88889998888888777765522211 1122445677777889999999999999998887553
No 124
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=93.35 E-value=0.83 Score=35.70 Aligned_cols=75 Identities=15% Similarity=0.124 Sum_probs=57.6
Q ss_pred HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH----hhcHHHHHHhhcCC------CCchHHHHHHHHHHHHH
Q 009975 407 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD------RVPNIKFNVAKVLQSLI 476 (521)
Q Consensus 407 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d------~~~~VR~~a~~~l~~~~ 476 (521)
....+..|...++++|+.+...|+..+..+.+.+|..+. ...|+..+.+++.+ +.+.||...+..+....
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 345666777778888888888888888888888887653 35677878877764 46789999999988888
Q ss_pred hhhch
Q 009975 477 PIVDQ 481 (521)
Q Consensus 477 ~~~~~ 481 (521)
..++.
T Consensus 126 ~~f~~ 130 (149)
T 3g2s_A 126 VGLPE 130 (149)
T ss_dssp HHCTT
T ss_pred HHhCC
Confidence 77643
No 125
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=92.80 E-value=0.92 Score=36.12 Aligned_cols=74 Identities=8% Similarity=0.081 Sum_probs=53.1
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH----hhcHHHHHHhhcCC-CCchHHHHHHHHHHHHHhhhch
Q 009975 408 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQ 481 (521)
Q Consensus 408 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d-~~~~VR~~a~~~l~~~~~~~~~ 481 (521)
...+..|.+.++++++.+...|+..+..+.+.+|..+. ...++..+.+++.. .++.||..++..+......++.
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44556677777778888888888888888888776543 24566666665554 5678999998888888777654
No 126
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=92.32 E-value=4.2 Score=34.26 Aligned_cols=131 Identities=8% Similarity=0.025 Sum_probs=75.8
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHH
Q 009975 334 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 412 (521)
Q Consensus 334 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 412 (521)
..+.++..++....|..++..+....+.... .-++.+..++. -++|++-...+.+++.++... .+.+.+
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~~ 127 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELPT 127 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHHH
Confidence 3444555666666777766666544333222 23344444443 466777666555565555432 233556
Q ss_pred HHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 009975 413 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 478 (521)
Q Consensus 413 ~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~ 478 (521)
.+.....|++..+|..++... + .. ........+++.+-..+.|+..-||.+..++|..+...
T Consensus 128 ~i~~W~~s~~~w~rR~ai~~~--l-~~-~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~ 189 (220)
T 2b6c_A 128 IFALFYGAENFWNRRVALNLQ--L-ML-KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT 189 (220)
T ss_dssp HHHHHTTCSSHHHHHHHHHTT--T-TC-GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCCHHHHHHHHHHH--H-HH-HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence 677777777755554444422 1 11 11222345677777788888888999888888888775
No 127
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=92.30 E-value=3.2 Score=32.31 Aligned_cols=75 Identities=16% Similarity=0.125 Sum_probs=58.8
Q ss_pred HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH----hhcHHHHHHhhcCC------CCchHHHHHHHHHHHHH
Q 009975 407 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD------RVPNIKFNVAKVLQSLI 476 (521)
Q Consensus 407 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d------~~~~VR~~a~~~l~~~~ 476 (521)
....+..|...++++|+.+...|+..+..+.+.+|..+. ...++..+.+++.+ ..+.||..++..+....
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 345666777778888999999999999999998887653 35788888887764 46789999999998888
Q ss_pred hhhch
Q 009975 477 PIVDQ 481 (521)
Q Consensus 477 ~~~~~ 481 (521)
..++.
T Consensus 116 ~~f~~ 120 (148)
T 1mhq_A 116 VWFPE 120 (148)
T ss_dssp HHCTT
T ss_pred HHcCC
Confidence 77654
No 128
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=91.98 E-value=2.5 Score=32.99 Aligned_cols=74 Identities=5% Similarity=-0.012 Sum_probs=51.7
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhH----HHHHHHHHHHcCC------CcHHHHHHHHHHHHHHHH
Q 009975 330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQD------KVYSIRDAAANNLKRLAE 399 (521)
Q Consensus 330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~----~~l~~~l~~~l~d------~~~~vr~~a~~~l~~l~~ 399 (521)
...+..+..-+.++++.+...++..+..+++++|..+.. ..++.-+..++.+ .+..||.-++..+..+..
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 345566666667788888888888888888888875422 3455556666653 467888888888888887
Q ss_pred HhCH
Q 009975 400 EFGP 403 (521)
Q Consensus 400 ~~~~ 403 (521)
.++.
T Consensus 127 ~f~~ 130 (149)
T 3g2s_A 127 GLPE 130 (149)
T ss_dssp HCTT
T ss_pred HhCC
Confidence 7754
No 129
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=91.71 E-value=5.3 Score=33.97 Aligned_cols=132 Identities=11% Similarity=0.084 Sum_probs=76.1
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhhhhhhHHHHHHhc-CCCChHHHHHHH-HHHHHHHHHhCCCccccchH
Q 009975 139 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMVA-NQLYELCEAVGPEPTRMDLV 216 (521)
Q Consensus 139 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~d~~~~vR~~~~-~~l~~i~~~~~~~~~~~~l~ 216 (521)
.++..+..++....|..|+..+....+.+.++ -++.+..++ ...+|.+--..+ ..++.+...- +..+.
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~-----~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~-----p~~~~ 133 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINET-----HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKH-----PELIS 133 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG-----GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHC-----GGGGG
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHC-----HHHHH
Confidence 45556666666678888887776544443332 222333332 346777655553 4556655431 12255
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHhhhCHHHHHHhhhHHHHHhccCCcHHHHHHHHHHHHcccccc
Q 009975 217 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 284 (521)
Q Consensus 217 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~ 284 (521)
+.+.....|++..+|..|+..+-....... ...+.+.+.....|++..||.+..+++..++...
T Consensus 134 ~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d----~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~ 197 (232)
T 3jxy_A 134 AYIPKWIASDNIWLQRAAILFQLKYKQKMD----EELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTN 197 (232)
T ss_dssp GTHHHHHHSSCHHHHHHHHHTTTTCGGGCC----HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHhCCC----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhC
Confidence 666777777777676666655422111111 1234556666778888888888888888877543
No 130
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=90.55 E-value=1.7 Score=36.89 Aligned_cols=74 Identities=8% Similarity=0.100 Sum_probs=52.7
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH----hhcHHHHHHhhcCC-CCchHHHHHHHHHHHHHhhhch
Q 009975 408 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQ 481 (521)
Q Consensus 408 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d-~~~~VR~~a~~~l~~~~~~~~~ 481 (521)
...+..|.+.++++|+.+...|+..+..+.+..|..+. ...++..+..+++. +.+.||..++..+......+..
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 45666777777788888888888888888887776543 24555555555433 4678999999888888877644
No 131
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=90.28 E-value=3.3 Score=32.69 Aligned_cols=74 Identities=12% Similarity=0.102 Sum_probs=57.2
Q ss_pred HhhhHHHHHhhhc-CcchHHHHHHHHHHHHhhcccChHHHh----hcHHHH-HHhhcC---CCCchHHHHHHHHHHHHHh
Q 009975 407 MQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEITC----SRLLPV-VINASK---DRVPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 407 ~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~~~----~~il~~-l~~~l~---d~~~~VR~~a~~~l~~~~~ 477 (521)
....+..|.+.++ ++|+.+...|+..+..+.+.+|..+.. ..++.. +.+.+. ++...||..++..+.....
T Consensus 51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 4556777888887 588999999999999999999976542 457776 666663 3456899999999988887
Q ss_pred hhc
Q 009975 478 IVD 480 (521)
Q Consensus 478 ~~~ 480 (521)
.++
T Consensus 131 ~f~ 133 (157)
T 1elk_A 131 AFR 133 (157)
T ss_dssp HHT
T ss_pred HcC
Confidence 664
No 132
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=90.14 E-value=5.3 Score=30.77 Aligned_cols=87 Identities=10% Similarity=0.025 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh----hhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHhCCCc
Q 009975 135 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP 210 (521)
Q Consensus 135 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~ 210 (521)
.+.+..+.+-++..++.+...|+.++..+.++.++. .....++.-+..++...++.||..+.+.+...+..++.+.
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~~ 120 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKNDP 120 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 344555556566677788888888888888887652 2223344444444445678899999999988888877664
Q ss_pred cccchHHHHHH
Q 009975 211 TRMDLVPAYVR 221 (521)
Q Consensus 211 ~~~~l~~~l~~ 221 (521)
....+...+..
T Consensus 121 ~l~~i~~~Y~~ 131 (140)
T 3ldz_A 121 QLSLISAMIKN 131 (140)
T ss_dssp GGTHHHHHHHH
T ss_pred CchHHHHHHHH
Confidence 43334444433
No 133
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=89.65 E-value=11 Score=33.71 Aligned_cols=183 Identities=9% Similarity=0.043 Sum_probs=115.8
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhh-Chh-hh------HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH-
Q 009975 330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVG-FF------DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE- 400 (521)
Q Consensus 330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~-~~~-~~------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~- 400 (521)
..++..+...+..=++..|..+...+..+...- |.. .. .+.++..+.....+++...-.+ ..|...++.
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G--~mLRecir~e 154 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCG--IMLRECIRHE 154 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHH--HHHHHHHTSH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHH--HHHHHHHHhH
Confidence 566777777777778888888888777765542 221 11 1346666666666655443211 112211110
Q ss_pred -hCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccC---hHHH---hhcHHHHHHhhcCCCCchHHHHHHHHHH
Q 009975 401 -FGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---SEIT---CSRLLPVVINASKDRVPNIKFNVAKVLQ 473 (521)
Q Consensus 401 -~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~---~~~~---~~~il~~l~~~l~d~~~~VR~~a~~~l~ 473 (521)
+.........+-.+.+....++..+-.-|..++..+..... .+++ .+.+......++..++.-.|..+++.|+
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg 234 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 234 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 00001122344466678888999998888888888764322 1221 2456677788999999999999999999
Q ss_pred HHHhhhchHH-----H-HhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 009975 474 SLIPIVDQSM-----V-EKTIRPCLVELTEDPDVDVRFFATQAIQSI 514 (521)
Q Consensus 474 ~~~~~~~~~~-----~-~~~~~~~l~~l~~D~~~~vr~~a~~al~~l 514 (521)
.+...-.+.. + ...-+-.+-.++.|+..+|+..|-+.++-.
T Consensus 235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvF 281 (341)
T 1upk_A 235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVF 281 (341)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeee
Confidence 9976422211 1 144556666789999999999999888754
No 134
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=89.62 E-value=6.6 Score=31.15 Aligned_cols=87 Identities=11% Similarity=0.030 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh----hhhhhhHHHHHHhcCC-CChHHHHHHHHHHHHHHHHhCCC
Q 009975 135 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPE 209 (521)
Q Consensus 135 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~d-~~~~vR~~~~~~l~~i~~~~~~~ 209 (521)
.+.+..+.+-++..++.+...|+.+|..+.++.++. .....++.-+..++.. .++.||..+.+.+......++.+
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 445566666677788889999999999999887752 2223344444444443 66789999999998888877765
Q ss_pred ccccchHHHHHH
Q 009975 210 PTRMDLVPAYVR 221 (521)
Q Consensus 210 ~~~~~l~~~l~~ 221 (521)
.....+...+..
T Consensus 131 ~~l~~i~~~Y~~ 142 (163)
T 1x5b_A 131 PQFSLISATIKS 142 (163)
T ss_dssp STTHHHHHHHHH
T ss_pred cccHHHHHHHHH
Confidence 433333333333
No 135
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=89.58 E-value=5.4 Score=31.94 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=61.2
Q ss_pred HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH----hhcHHHHHHhhcCC------CCchHHHHHHHHHHHHH
Q 009975 407 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD------RVPNIKFNVAKVLQSLI 476 (521)
Q Consensus 407 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d------~~~~VR~~a~~~l~~~~ 476 (521)
....+..|.+.++++|..+...|+..+..+.+.+|..+. ...++..+.+++.. ....||..++..+....
T Consensus 48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 455677788888999999999999999999998887653 35678888887753 36789999999999998
Q ss_pred hhhchH
Q 009975 477 PIVDQS 482 (521)
Q Consensus 477 ~~~~~~ 482 (521)
..++..
T Consensus 128 ~~f~~~ 133 (171)
T 1juq_A 128 MALPEE 133 (171)
T ss_dssp HHCTTC
T ss_pred HHcCCC
Confidence 887653
No 136
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=89.22 E-value=7.4 Score=31.16 Aligned_cols=75 Identities=8% Similarity=0.019 Sum_probs=55.9
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhH----HHHHHHHHHHcCC------CcHHHHHHHHHHHHHHHH
Q 009975 330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQD------KVYSIRDAAANNLKRLAE 399 (521)
Q Consensus 330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~----~~l~~~l~~~l~d------~~~~vr~~a~~~l~~l~~ 399 (521)
...+..+.+-++++++.+...++..+..+++++|..+.. ..++.-+..++.. .+..||..++..+..+..
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 455667777778889999999999999999998875432 3455556666642 467899999999999888
Q ss_pred HhCHH
Q 009975 400 EFGPE 404 (521)
Q Consensus 400 ~~~~~ 404 (521)
.++.+
T Consensus 129 ~f~~~ 133 (171)
T 1juq_A 129 ALPEE 133 (171)
T ss_dssp HCTTC
T ss_pred HcCCC
Confidence 77643
No 137
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=88.78 E-value=7.1 Score=30.37 Aligned_cols=74 Identities=8% Similarity=0.001 Sum_probs=53.2
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhhhH----HHHHHHHHHHcCC------CcHHHHHHHHHHHHHHHH
Q 009975 330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQD------KVYSIRDAAANNLKRLAE 399 (521)
Q Consensus 330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~----~~l~~~l~~~l~d------~~~~vr~~a~~~l~~l~~ 399 (521)
...+..+..-++++++.+...++..+..+++++|..+.. ..++.-+..++.+ .+..||..++..+..+..
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 345666666677888888888888888888888875432 4455556666654 367888888888888887
Q ss_pred HhCH
Q 009975 400 EFGP 403 (521)
Q Consensus 400 ~~~~ 403 (521)
.++.
T Consensus 117 ~f~~ 120 (148)
T 1mhq_A 117 WFPE 120 (148)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 7654
No 138
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=88.02 E-value=11 Score=31.88 Aligned_cols=131 Identities=11% Similarity=0.109 Sum_probs=73.0
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHh-cCCChHHHHHHH-HHhHHHHhhhChhhhHHHHH
Q 009975 295 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAII-EYIPLLASQLGVGFFDDKLG 372 (521)
Q Consensus 295 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vr~~~~-~~l~~l~~~~~~~~~~~~l~ 372 (521)
..+..+.+++..+.|..|+..+....+.+.+ .-++.+..++ ...+|.+-...+ ..++.+....+. ...
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~-----~~~ 133 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINE-----THIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE-----LIS 133 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCG-----GGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG-----GGG
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCH-----HHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH-----HHH
Confidence 4555666777777777777776644333322 2233344433 346677655442 233333332111 134
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcc
Q 009975 373 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV 439 (521)
Q Consensus 373 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~ 439 (521)
+.+..+..|++..+|+.|+..+-... ...+ ...+++.+...+.|+.+-+|.+..++|..++..
T Consensus 134 ~~l~~W~~s~~~w~rR~ai~~~l~~~--~~~d--~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~ 196 (232)
T 3jxy_A 134 AYIPKWIASDNIWLQRAAILFQLKYK--QKMD--EELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT 196 (232)
T ss_dssp GTHHHHHHSSCHHHHHHHHHTTTTCG--GGCC--HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHH--hCCC--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 55667778888888887765542111 1111 223455556667788888888888888777764
No 139
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=85.69 E-value=12 Score=31.51 Aligned_cols=78 Identities=14% Similarity=0.113 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh----hhhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCC
Q 009975 134 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP 208 (521)
Q Consensus 134 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~~ 208 (521)
-.+.+..+.+-++..++.+...|+.+|..+.++.++. .....++..+..+++ ..+..||..+.+.+...+..++.
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 3455666666677888889999999999998887652 222334444444333 35678999999988888877765
Q ss_pred Ccc
Q 009975 209 EPT 211 (521)
Q Consensus 209 ~~~ 211 (521)
+..
T Consensus 123 ~~~ 125 (226)
T 3zyq_A 123 EPK 125 (226)
T ss_dssp CGG
T ss_pred Ccc
Confidence 543
No 140
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=85.68 E-value=4.4 Score=30.62 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=39.3
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHHhhcHH
Q 009975 371 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL 450 (521)
Q Consensus 371 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~il 450 (521)
++|-++.+++|.||.+...++..|..+ .+.++|.+.+.+++.+..-.. +.+..+...+..+ ....+.
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~---------~~~l~p~I~~vl~s~D~~W~y---wil~~lv~~~~~~-~~~~l~ 98 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLH---------QSIAMPHILTILQGNDIMWKY---WVIKLMIPYLIYP-NKQLVK 98 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHT---------HHHHHHHHHHHHHSSCHHHHH---HHHHHHGGGCCHH-HHHHHH
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHc---------cHhhHHHHHHHHHcCChHHHH---HHHHHHHHcCCHH-HHHHHH
Confidence 566666777777777766555554432 234555555555444433332 3333334333332 234455
Q ss_pred HHHHhhcCCC
Q 009975 451 PVVINASKDR 460 (521)
Q Consensus 451 ~~l~~~l~d~ 460 (521)
+.+.++...+
T Consensus 99 ~eL~rl~~~p 108 (134)
T 3ut4_A 99 SELERLSSLE 108 (134)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHhCC
Confidence 5566655544
No 141
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=84.81 E-value=2.5 Score=32.41 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=48.1
Q ss_pred HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHH---HHHHHhc-----CC------CCccHHHHHHHH
Q 009975 445 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIR---PCLVELT-----ED------PDVDVRFFATQA 510 (521)
Q Consensus 445 ~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~---~~l~~l~-----~D------~~~~vr~~a~~a 510 (521)
+...+++.|++-+.++.+.|+..|+++|..++.... +.|...+. ..+..+. .| ...+||..|.+.
T Consensus 46 ~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs-~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl 124 (140)
T 1vdy_A 46 IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG-SEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHET 124 (140)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC-HHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHH
Confidence 347899999999999999999999999999987643 33332221 2233331 12 237889888888
Q ss_pred HHHHH
Q 009975 511 IQSID 515 (521)
Q Consensus 511 l~~l~ 515 (521)
+..|.
T Consensus 125 ~~ll~ 129 (140)
T 1vdy_A 125 ISAIF 129 (140)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77653
No 142
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=83.00 E-value=29 Score=32.04 Aligned_cols=95 Identities=7% Similarity=0.081 Sum_probs=47.4
Q ss_pred chHHHHHHHHHHHHhhcccChHHHhh---cHHHHHHhhcCCCCchHHHHHHHHHHH--HHhhh--chHHHHhhHHHHHHH
Q 009975 422 HYLYRMTILRAISLLAPVMGSEITCS---RLLPVVINASKDRVPNIKFNVAKVLQS--LIPIV--DQSMVEKTIRPCLVE 494 (521)
Q Consensus 422 ~~~~r~~a~~~l~~l~~~~~~~~~~~---~il~~l~~~l~d~~~~VR~~a~~~l~~--~~~~~--~~~~~~~~~~~~l~~ 494 (521)
+..-....+.-+..+.+.+++..|.. .+...+-.+++.++..|-.+|+..+.. +...+ ..+.+.+.+.|.|.+
T Consensus 264 ns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~ 343 (403)
T 3fga_B 264 HSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYR 343 (403)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444455555666666666555432 334444555666666666666554411 11111 112233445555555
Q ss_pred hcC-CCCccHHHHHHHHHHHHHH
Q 009975 495 LTE-DPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 495 l~~-D~~~~vr~~a~~al~~l~~ 516 (521)
.+. .=+..||..+..+++.+.+
T Consensus 344 ~~~~HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 344 NSKTHWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp TTSCCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHccCHHHHHHHHHHHHHHHH
Confidence 333 2366677667666666544
No 143
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=82.42 E-value=33 Score=32.26 Aligned_cols=84 Identities=13% Similarity=0.222 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCHHHHHh---hhHHHHHhhhcCcchHHHHHHHHHHHHh--hcccChHHHhhcHHHHHHhhc-----CCCC
Q 009975 392 NNLKRLAEEFGPEWAMQ---HITPQVLEMINNPHYLYRMTILRAISLL--APVMGSEITCSRLLPVVINAS-----KDRV 461 (521)
Q Consensus 392 ~~l~~l~~~~~~~~~~~---~l~~~l~~~l~~~~~~~r~~a~~~l~~l--~~~~~~~~~~~~il~~l~~~l-----~d~~ 461 (521)
.-+..+....+...+.. .++..+...+++++.+|-+.|+..+..= ...+ ......++|.++..+ .+.+
T Consensus 306 ~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li--~~n~~~IlPii~p~L~~~s~~HWn 383 (449)
T 2npp_B 306 NELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLI--SDNAAKILPIMFPSLYRNSKTHWN 383 (449)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH--HTTHHHHHHHHHHHHTSCTTCCSS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHH--HhchhhhHHhhHHHHHHHHHHhcC
Confidence 33444444444444432 2344444555666666666665444211 1110 001233444444332 3345
Q ss_pred chHHHHHHHHHHHHHh
Q 009975 462 PNIKFNVAKVLQSLIP 477 (521)
Q Consensus 462 ~~VR~~a~~~l~~~~~ 477 (521)
..||..+.+++..+.+
T Consensus 384 ~~V~~la~~vlk~l~e 399 (449)
T 2npp_B 384 KTIHGLIYNALKLFME 399 (449)
T ss_dssp TTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666664443
No 144
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=80.82 E-value=31 Score=30.88 Aligned_cols=138 Identities=10% Similarity=0.063 Sum_probs=86.9
Q ss_pred CChHHHHHHHHhHHHHHHh---hCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh-hh--hhhhhHHHHHH
Q 009975 109 DMPMVRRSAASNLGKFAAT---VEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QD--CVAHILPVIVN 182 (521)
Q Consensus 109 ~~~~vr~~a~~~l~~l~~~---~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~--~~~~l~~~l~~ 182 (521)
.+...++.+...|..+... +-.+.+...-+..+.....+.+.+....++.++.++..+... +. ..+.++.-+..
T Consensus 130 ~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lys 209 (339)
T 3dad_A 130 SSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYT 209 (339)
T ss_dssp CCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHH
Confidence 4466677777778774431 222444455567777777777889999999999999877322 11 13446666777
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHhCCCcc-------------ccchHHHHHHhcC---CChHHHHHHHHHhHHHHHhhhC
Q 009975 183 FSQDKSWRVRYMVANQLYELCEAVGPEPT-------------RMDLVPAYVRLLR---DNEAEVRIAAAGKVTKFCRILN 246 (521)
Q Consensus 183 ~~~d~~~~vR~~~~~~l~~i~~~~~~~~~-------------~~~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~ 246 (521)
++.+.+..|-+.+.+.|..++........ ....+..++..++ ..+.+++..|+..+..+....+
T Consensus 210 lv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~ap 289 (339)
T 3dad_A 210 LCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALP 289 (339)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCS
T ss_pred HHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 77778888888888888877764321100 0112344555554 4566777777766666665554
No 145
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=78.72 E-value=13 Score=31.15 Aligned_cols=74 Identities=8% Similarity=0.083 Sum_probs=47.7
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChHHH----hhcHHHHHHhhcC-CCCchHHHHHHHHHHHHHhhhch
Q 009975 408 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQ 481 (521)
Q Consensus 408 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~-d~~~~VR~~a~~~l~~~~~~~~~ 481 (521)
...+..|.+.++++|+.+...|+..+..+.+..|..+. ...++..+..+++ .+...||..++..+......+..
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 34455566666777777777777777777776665432 2345555555443 34677888888888877776643
No 146
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=72.99 E-value=32 Score=29.35 Aligned_cols=54 Identities=19% Similarity=0.256 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHhhcccChHHH----hhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 009975 423 YLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKDRVPNIKFNVAKVLQSLI 476 (521)
Q Consensus 423 ~~~r~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~ 476 (521)
..+|.+++..+|++.+.-..+.+ ...++|.+++.++-++.--|..|...+..+.
T Consensus 116 E~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 116 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp HHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 45666666666666654333321 2456666666666666666666666555554
No 147
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=71.96 E-value=52 Score=29.58 Aligned_cols=10 Identities=40% Similarity=0.534 Sum_probs=3.8
Q ss_pred HHHHHhccCC
Q 009975 256 PCVKELSSDS 265 (521)
Q Consensus 256 ~~l~~~~~d~ 265 (521)
+.+..++.|.
T Consensus 122 ~~~~~L~~d~ 131 (333)
T 3bwt_A 122 PYTVQLSKDL 131 (333)
T ss_dssp GGHHHHHTST
T ss_pred HHHHHHhcCC
Confidence 3333333333
No 148
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=71.77 E-value=30 Score=26.12 Aligned_cols=79 Identities=11% Similarity=0.055 Sum_probs=51.2
Q ss_pred HhhhHHHHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhcCCChHHHHHHHHHHHHhhhhhchhhHhhh
Q 009975 252 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 331 (521)
Q Consensus 252 ~~~~~~l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 331 (521)
..++|.+...++|.||.+...++..+..+ .+.++|.+...+++++..-....+..+ ...+..+ ....
T Consensus 30 ~p~lp~LL~WLQD~NWPvA~~i~~~L~~~---------~~~l~p~I~~vl~s~D~~W~ywil~~l---v~~~~~~-~~~~ 96 (134)
T 3ut4_A 30 EPIIFDLLKWLQDYNWPIAKDILPVVVLH---------QSIAMPHILTILQGNDIMWKYWVIKLM---IPYLIYP-NKQL 96 (134)
T ss_dssp HHHHHHHHGGGSCTTSTTHHHHHHHHHHT---------HHHHHHHHHHHHHSSCHHHHHHHHHHH---GGGCCHH-HHHH
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHc---------cHhhHHHHHHHHHcCChHHHHHHHHHH---HHcCCHH-HHHH
Confidence 45778888888999998888877777654 346778888888777766555544433 3233322 2256
Q ss_pred HHHHHHHHhcCC
Q 009975 332 LLPAIVELAEDR 343 (521)
Q Consensus 332 ~~~~l~~~~~~~ 343 (521)
+.|.+..+...+
T Consensus 97 l~~eL~rl~~~p 108 (134)
T 3ut4_A 97 VKSELERLSSLE 108 (134)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHhCC
Confidence 667776666543
No 149
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=70.86 E-value=71 Score=30.06 Aligned_cols=219 Identities=11% Similarity=0.073 Sum_probs=117.0
Q ss_pred hhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChh--HHHHhHHHHHHHhhcC-CCCcchhhhhhhhhhhcCCC----ChH
Q 009975 21 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--DLVDWYIPLVKRLAAG-EWFTARVSACGLFHIAYPSA----PDI 93 (521)
Q Consensus 21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~--~~~~~l~p~i~~~~~~-~~~~~r~~~~~~~~~~~~~~----~~~ 93 (521)
++--|..+..++|+.-|+.....+..+-..+..- .++..+-..+.+++.+ +.+.--...+..++.+..+. .++
T Consensus 163 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKee 242 (449)
T 2npp_B 163 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 242 (449)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHH
Confidence 4455566778899999999888887777765432 2334444444444433 23322334456666666553 344
Q ss_pred HHHHHHHHHHHhcCCCChHH-HHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChhhh
Q 009975 94 LKTELRSIYTQLCQDDMPMV-RRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC 172 (521)
Q Consensus 94 ~~~~l~~~l~~l~~~~~~~v-r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~ 172 (521)
.+..+...+.-+.+.+.-.+ -.....++..+++.- +.....++..+.+.---.+..-....+.-+..+.+.++++..
T Consensus 243 hk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD--p~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef 320 (449)
T 2npp_B 243 HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD--STLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEF 320 (449)
T ss_dssp HHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHC--GGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcC--cHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHH
Confidence 44445555666655443222 223334444444321 223333333333333333444344556667777777777654
Q ss_pred hhh---hHHHHHHhcCCCChHHHHHHHHHH--HHHHHHhCCCccccchHHHHHHhcCC----C-hHHHHHHHHHhHHHHH
Q 009975 173 VAH---ILPVIVNFSQDKSWRVRYMVANQL--YELCEAVGPEPTRMDLVPAYVRLLRD----N-EAEVRIAAAGKVTKFC 242 (521)
Q Consensus 173 ~~~---l~~~l~~~~~d~~~~vR~~~~~~l--~~i~~~~~~~~~~~~l~~~l~~~l~d----~-~~~vr~~a~~~l~~l~ 242 (521)
.+. ++..+...+++++..|-..|.... ..+...+... ...++|.+...+.. . +..||..+..++..+.
T Consensus 321 ~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n--~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~ 398 (449)
T 2npp_B 321 VKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDN--AAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFM 398 (449)
T ss_dssp HHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTT--HHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhc--hhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 443 555566677888888877766433 1122222111 23466665554422 1 3468888888887655
Q ss_pred h
Q 009975 243 R 243 (521)
Q Consensus 243 ~ 243 (521)
+
T Consensus 399 e 399 (449)
T 2npp_B 399 E 399 (449)
T ss_dssp T
T ss_pred H
Confidence 5
No 150
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=70.26 E-value=61 Score=29.04 Aligned_cols=99 Identities=10% Similarity=-0.025 Sum_probs=59.7
Q ss_pred CCChHHHHHHHHHHHHhhh---hhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhh-Chhhh--HHHHHHHHH
Q 009975 303 DEFPDVRLNIISKLDQVNQ---VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGFF--DDKLGALCM 376 (521)
Q Consensus 303 d~~~~vr~~a~~~l~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~-~~~~~--~~~l~~~l~ 376 (521)
+.+...++.++..|..+.. .+..+.+...=+..+.....+.+......++.++..+..+. |.+.+ ...++.-+.
T Consensus 129 ~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~ly 208 (339)
T 3dad_A 129 SSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLY 208 (339)
T ss_dssp HCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHH
Confidence 3445566666666666332 22334443444666666667777777777777777765542 22111 234555666
Q ss_pred HHcCCCcHHHHHHHHHHHHHHHHHh
Q 009975 377 QWLQDKVYSIRDAAANNLKRLAEEF 401 (521)
Q Consensus 377 ~~l~d~~~~vr~~a~~~l~~l~~~~ 401 (521)
.++...+..|-+.|++.|..++...
T Consensus 209 slv~s~~~~V~k~AL~LL~v~V~~s 233 (339)
T 3dad_A 209 TLCASLSRLVVKTALKLLLVFVEYS 233 (339)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCccHHHHHHHHHHHHHHHccC
Confidence 6777777888888888877776543
No 151
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=69.63 E-value=53 Score=28.09 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHhhhcChhh----hhhhhHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009975 133 LKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQD----CVAHILPVIVNFSQDKSWRVRYMVANQLYELC 203 (521)
Q Consensus 133 ~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~ 203 (521)
+--.+.|++....++. .+..|..+..+++.+.+.-.++. ...+++|+..+..+..+..-|..|.-.+.+|.
T Consensus 98 iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 98 IPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp GGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred chHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 3345677776655543 35789999999999997644432 23568888888888888777777777776665
No 152
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=69.04 E-value=72 Score=29.46 Aligned_cols=88 Identities=13% Similarity=0.167 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhCHHHH---HhhhHHHHHhhhcCcchHHHHHHHHHHHHh--hccc--ChHHHhhcHHHHHHhh-cCCCC
Q 009975 390 AANNLKRLAEEFGPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLL--APVM--GSEITCSRLLPVVINA-SKDRV 461 (521)
Q Consensus 390 a~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l--~~~~--~~~~~~~~il~~l~~~-l~d~~ 461 (521)
-+.-+..+....++..+ ...++..+...+.+++.+|-++|+.....= ...+ ....+.+.+.|.+.+. -.+.+
T Consensus 271 FL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~HWn 350 (403)
T 3fga_B 271 FLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWN 350 (403)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHccC
Confidence 44455566665555543 345666677788999999998887654221 1111 1122334445555553 45668
Q ss_pred chHHHHHHHHHHHHHh
Q 009975 462 PNIKFNVAKVLQSLIP 477 (521)
Q Consensus 462 ~~VR~~a~~~l~~~~~ 477 (521)
..||..+.+++..+..
T Consensus 351 ~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 351 KTIHGLIYNALKLFME 366 (403)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999999988764
No 153
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=67.32 E-value=68 Score=28.53 Aligned_cols=96 Identities=17% Similarity=0.234 Sum_probs=61.7
Q ss_pred cHHHHHHHHHHHHccccccChH--HHHHhHHHHHHHhhcC---CChHHHHHHHHHHHHhhhh-------hchhhHhhhHH
Q 009975 266 SQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKD---EFPDVRLNIISKLDQVNQV-------IGIDLLSQSLL 333 (521)
Q Consensus 266 ~~~vr~~~~~~l~~i~~~~~~~--~~~~~l~~~l~~~l~d---~~~~vr~~a~~~l~~~~~~-------~~~~~~~~~~~ 333 (521)
++.|-......+.++...+.+. ...+.+...-+.++++ +.|+.|..-..-+..+... ++++.+ +.++
T Consensus 91 epeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~f-klvi 169 (321)
T 1w9c_A 91 EPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQF-KLVL 169 (321)
T ss_dssp CTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHH-HHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHH-HHHH
Confidence 3455555555555555444332 2345556666677763 5689998888777776643 234444 6777
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHhhh
Q 009975 334 PAIVELAEDRHWRVRLAIIEYIPLLASQL 362 (521)
Q Consensus 334 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~ 362 (521)
..+....+++...+-...+..+..+.+.+
T Consensus 170 dsiiWa~kH~~r~V~e~gL~il~~ll~n~ 198 (321)
T 1w9c_A 170 DSIIWAFKHTMRNVADTGLQILFTLLQNV 198 (321)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHH
Confidence 78888888888888888777776666555
No 154
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=67.01 E-value=55 Score=27.32 Aligned_cols=77 Identities=6% Similarity=-0.023 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcChh----hhhhhhHHHHHHhcC-CCChHHHHHHHHHHHHHHHHhCCC
Q 009975 135 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPE 209 (521)
Q Consensus 135 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~-d~~~~vR~~~~~~l~~i~~~~~~~ 209 (521)
.+.+..+.+-++..++.+...|+.+|..+.++.++. .....++..+..++. ..+..||..+.+.+...+..++..
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSS 120 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccc
Confidence 344555666667788888889999998888876542 122224444444333 456789999999888888777654
Q ss_pred cc
Q 009975 210 PT 211 (521)
Q Consensus 210 ~~ 211 (521)
..
T Consensus 121 ~~ 122 (220)
T 1dvp_A 121 DK 122 (220)
T ss_dssp SS
T ss_pred hH
Confidence 43
No 155
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=66.18 E-value=44 Score=25.98 Aligned_cols=75 Identities=8% Similarity=0.054 Sum_probs=55.1
Q ss_pred HhhhHHHHHhhhcC-cchHHHHHHHHHHHHhhcccChHHHh----hcHHHH-HHhhcCCC---CchHHHHHHHHHHHHHh
Q 009975 407 MQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSEITC----SRLLPV-VINASKDR---VPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 407 ~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~~~~~----~~il~~-l~~~l~d~---~~~VR~~a~~~l~~~~~ 477 (521)
....+..|...++. +|..+...|+..+..+.+.+|..+.. ..++.- +.+++.++ ...||..++..+.....
T Consensus 51 pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 51 PKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 45667777777764 68888888999999999999986532 456653 66666643 34699999999988887
Q ss_pred hhch
Q 009975 478 IVDQ 481 (521)
Q Consensus 478 ~~~~ 481 (521)
.+..
T Consensus 131 ~F~~ 134 (152)
T 3rru_A 131 GFPG 134 (152)
T ss_dssp CCSS
T ss_pred HhCC
Confidence 7654
No 156
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=63.27 E-value=52 Score=25.72 Aligned_cols=76 Identities=13% Similarity=0.051 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhc-CCChhHHHHHHHHHHHHhhhcChh----hhhhhhHHH-HHHhcC---CCChHHHHHHHHHHHHHHHH
Q 009975 135 TDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPV-IVNFSQ---DKSWRVRYMVANQLYELCEA 205 (521)
Q Consensus 135 ~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~-l~~~~~---d~~~~vR~~~~~~l~~i~~~ 205 (521)
.+.+..+.+-++ ..++.+...|+.++..+.++.++. .....++.- +.+.+. ++...||..+.+.+...+..
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 344555666565 578888899999999999988753 223334443 445443 34568999999999888887
Q ss_pred hCCCc
Q 009975 206 VGPEP 210 (521)
Q Consensus 206 ~~~~~ 210 (521)
++...
T Consensus 132 f~~~p 136 (157)
T 1elk_A 132 FRSSP 136 (157)
T ss_dssp HTTCT
T ss_pred cCCCc
Confidence 76543
No 157
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=61.37 E-value=1.5e+02 Score=30.45 Aligned_cols=107 Identities=8% Similarity=0.021 Sum_probs=63.1
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHhhhC--HHHHHHhhhHHHHHhccC---CcHHHHHHHHHHHHccccccCh-H
Q 009975 214 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PELAIQHILPCVKELSSD---SSQHVRSALASVIMGMAPLLGK-D 287 (521)
Q Consensus 214 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~~~d---~~~~vr~~~~~~l~~i~~~~~~-~ 287 (521)
.+.|.+...+...+..+...+..++..++..-+ ++.+.+.++..+...++. .+.+--.+++.++..++..+-. .
T Consensus 339 ~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~ 418 (799)
T 1vsy_4 339 IFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDK 418 (799)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTST
T ss_pred HHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCc
Confidence 477777777888888899999999988877543 155555555555555444 4455555667777777654422 1
Q ss_pred HHHHhHHHHHHHhh---cCCChHHHHHHHHHHHHhh
Q 009975 288 ATIEQLLPIFLSLL---KDEFPDVRLNIISKLDQVN 320 (521)
Q Consensus 288 ~~~~~l~~~l~~~l---~d~~~~vr~~a~~~l~~~~ 320 (521)
.+..++.|.+..++ .-.++.--..+.+.+..+.
T Consensus 419 ~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~ 454 (799)
T 1vsy_4 419 LYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIA 454 (799)
T ss_dssp TGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHH
Confidence 23345555554433 3334433344445554443
No 158
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=61.11 E-value=53 Score=25.08 Aligned_cols=64 Identities=16% Similarity=0.134 Sum_probs=39.1
Q ss_pred HHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhC
Q 009975 338 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 402 (521)
Q Consensus 338 ~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 402 (521)
+...+.+|..=.....-|..+......+ +...+++.+.+.+++.++.+..-|+..|..++..-.
T Consensus 18 ~ATs~d~~~~pgylm~EIA~~T~~s~~~-~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs 81 (140)
T 1vdy_A 18 AVTSDEDKVAPVYKLEEICDLLRSSHVS-IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG 81 (140)
T ss_dssp HTTCSCSSCCCHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC
T ss_pred HHhcCCCCCCcHHHHHHHHHHHHhcchh-HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC
Confidence 3444555544444444444443332222 235688888888999888888888888887775433
No 159
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=57.69 E-value=1.2e+02 Score=27.97 Aligned_cols=176 Identities=10% Similarity=0.116 Sum_probs=84.5
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhC-hh-hhHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHHHHHhCH---
Q 009975 330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-VG-FFDDKLGALCMQWLQDKVY-SIRDAAANNLKRLAEEFGP--- 403 (521)
Q Consensus 330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~-~~-~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~--- 403 (521)
...+-.+.+++.+++++-|...-..+..+...+. -. .....+...+.+++.+... .--...++.++.+...+..
T Consensus 173 ~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLK 252 (392)
T 2jak_A 173 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLK 252 (392)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCc
Confidence 3455566667777777777777777766654432 22 2233344455555443221 1112356667777766641
Q ss_pred HHHHhhhHHHHHhhhcCcchH-HHHHHHHHHHHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH
Q 009975 404 EWAMQHITPQVLEMINNPHYL-YRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 482 (521)
Q Consensus 404 ~~~~~~l~~~l~~~l~~~~~~-~r~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~ 482 (521)
+....-+...+..+.+.+... .......++..+.+. +......++..+++.==-++..-....+.-+..+....+++
T Consensus 253 eehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK--Dp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~ 330 (392)
T 2jak_A 253 EEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPS 330 (392)
T ss_dssp HHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHH--CGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhc--CchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHH
Confidence 112222233333344443321 111222333333321 11112333444443321223333456677778888887777
Q ss_pred HHHhhHHHHHHH---hcCCCCccHHHHH
Q 009975 483 MVEKTIRPCLVE---LTEDPDVDVRFFA 507 (521)
Q Consensus 483 ~~~~~~~~~l~~---l~~D~~~~vr~~a 507 (521)
.+.....|.+.. +.+.+.-.|-..|
T Consensus 331 ~f~~i~~~lF~~la~ci~S~hfqVAErA 358 (392)
T 2jak_A 331 EFVKIMEPLFRQLAKCVSSPHFQVAERA 358 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 776555555544 4555555554444
No 160
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=53.01 E-value=44 Score=28.25 Aligned_cols=69 Identities=6% Similarity=-0.007 Sum_probs=49.9
Q ss_pred HHHHHHHhhcCCChhHHHHHHH----HHHHHhhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 009975 137 IMSIFEDLTQDDQDSVRLLAVE----GCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 205 (521)
Q Consensus 137 l~~~l~~l~~d~~~~vr~~a~~----~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~~~ 205 (521)
..+.+.....|++.-+|..|+. .+..+.....++.....++..+...+.|+...||.++.-+|..+...
T Consensus 109 ~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~ 181 (235)
T 1t06_A 109 AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS 181 (235)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhh
Confidence 5667778888999888888887 54442211112345666888888888999999999999888877653
No 161
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=52.47 E-value=1.3e+02 Score=27.09 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=21.7
Q ss_pred HhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhc
Q 009975 445 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELT 496 (521)
Q Consensus 445 ~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 496 (521)
|-++++..++... .+..|...+..+......+....+...++..+.++.
T Consensus 295 ygnyViq~~L~~~---~~~~r~~i~~~i~~~~~~L~~~~~g~~i~~kl~~~~ 343 (351)
T 3gvo_A 295 YANYVVQKMIDMA---EPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY 343 (351)
T ss_dssp THHHHHHHHHHHC---CHHHHHHHHHHHGGGHHHHTTSTTTHHHHHHHHHHT
T ss_pred chHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3344555555443 233455544444333333333334455555555543
No 162
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=50.71 E-value=1.5e+02 Score=27.05 Aligned_cols=298 Identities=9% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCh-HHHHHHHHHhHHHHHhhhCHHHHHHhhhHH
Q 009975 179 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNPELAIQHILPC 257 (521)
Q Consensus 179 ~l~~~~~d~~~~vR~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 257 (521)
.+.+.++..++..|......+..-...+-.+...+.++..+.+....+. ..+-......+..++.+.-...+.+.++..
T Consensus 45 ~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~ 124 (369)
T 3k49_A 45 FIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEY 124 (369)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHh
Q ss_pred HHHhccCCcHHHHHHHHHHHHccccccChHHHHHhHHHHHHHhhc-CCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHH
Q 009975 258 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI 336 (521)
Q Consensus 258 l~~~~~d~~~~vr~~~~~~l~~i~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l 336 (521)
.+..-|...+.-+..-...+-.+..-++++..++.... +....+-......+..++.. ..--..+
T Consensus 125 -------~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~-------~~Gs~Vv 190 (369)
T 3k49_A 125 -------IDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTH-------SYGCRVI 190 (369)
T ss_dssp -------SCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTS-------TTHHHHH
T ss_pred -------CCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC-------CccCcHH
Q ss_pred HHHhcCCChHHHHHHHHHhHHHHhhhChhhhHHHHHHHHHHHcCCCcHH---HHHHHHHHHHHHHHHhCHHHHHhhhHHH
Q 009975 337 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYS---IRDAAANNLKRLAEEFGPEWAMQHITPQ 413 (521)
Q Consensus 337 ~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~---vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 413 (521)
..+++..+..-|..++..+......+-.+.+..+++..++....+.... .|...+..+..-...+..+.+...++..
T Consensus 191 q~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~Ls~~k~gS~Vvek 270 (369)
T 3k49_A 191 QRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVVEK 270 (369)
T ss_dssp HHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHHHHHHHHHHHHHTTHHHHHTSTTHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhhhhHhHHHHHHHHHHHHHHHHHhhhHhhHHHHH
Q ss_pred HHhhhcCcchHHHHHHHHHH-------------HHhhcccChHHHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc
Q 009975 414 VLEMINNPHYLYRMTILRAI-------------SLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 480 (521)
Q Consensus 414 l~~~l~~~~~~~r~~a~~~l-------------~~l~~~~~~~~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~ 480 (521)
+.... +...|...+..+ ..-...+-.+.|-++++..++...+++ -|...+..+.-....+.
T Consensus 271 ~l~~~---~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~l~~~~~~---~~~~l~~~i~p~l~~L~ 344 (369)
T 3k49_A 271 SILYG---SKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSEGE---GKKLIVIAIRAYLDKLN 344 (369)
T ss_dssp HHHHS---CHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHhC---CHHHHHHHHHHHhccccccccccccccHHHHHHhCcchHHHHHHHHHhCCHH---HHHHHHHHHHHHHHHHh
Q ss_pred hH-HHHhhHHHHHHHhc
Q 009975 481 QS-MVEKTIRPCLVELT 496 (521)
Q Consensus 481 ~~-~~~~~~~~~l~~l~ 496 (521)
.. .+...++..+.+++
T Consensus 345 ~~~~~G~~~~~~~e~~~ 361 (369)
T 3k49_A 345 KSNSLGNRHLASVEKLA 361 (369)
T ss_dssp HCC--CCCCCHHHHHHH
T ss_pred ccccCcchHHHHHHHHH
No 163
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=50.33 E-value=87 Score=24.29 Aligned_cols=86 Identities=7% Similarity=0.035 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhc-CCChhHHHHHHHHHHHHhhhcChh----hhhhhhHH-HHHHhcCC---CChHHHHHHHHHHHHHHHH
Q 009975 135 TDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILP-VIVNFSQD---KSWRVRYMVANQLYELCEA 205 (521)
Q Consensus 135 ~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~-~l~~~~~d---~~~~vR~~~~~~l~~i~~~ 205 (521)
.+.+..+.+-++ ..++.+...|+.+|..+.++.+.. .....++. .+.+++.+ ....||..+.+.+...+..
T Consensus 52 keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 52 KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 344455555444 457777778999999999888763 22233443 34455543 2347999999999888877
Q ss_pred hCCCccccchHHHHH
Q 009975 206 VGPEPTRMDLVPAYV 220 (521)
Q Consensus 206 ~~~~~~~~~l~~~l~ 220 (521)
++.+.....+...+.
T Consensus 132 F~~~p~l~~i~~~Y~ 146 (152)
T 3rru_A 132 FPGGVDVSEVKEVYL 146 (152)
T ss_dssp CSSSCCCHHHHHHHH
T ss_pred hCCCCcchHHHHHHH
Confidence 765543334444433
No 164
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=46.55 E-value=65 Score=27.22 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=18.0
Q ss_pred HHhHHHHHHHhhcCCChHHHHHHHHHHHHhhh
Q 009975 290 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 321 (521)
Q Consensus 290 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 321 (521)
.+.++..+...+.|++..|+.+...+|..+..
T Consensus 149 ~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk 180 (235)
T 1t06_A 149 ISDMLEMVKDTIHHSPERTKSAMNNFLNTVAI 180 (235)
T ss_dssp HHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Confidence 44455555555666666666666555555443
No 165
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=43.25 E-value=1.8e+02 Score=25.91 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=6.7
Q ss_pred hHHHHHHHhhcCCC
Q 009975 292 QLLPIFLSLLKDEF 305 (521)
Q Consensus 292 ~l~~~l~~~l~d~~ 305 (521)
.+.+.+..+.+|+.
T Consensus 191 el~~~~~~L~~d~~ 204 (333)
T 3bwt_A 191 KLLALVDKLTLDPF 204 (333)
T ss_dssp HHHTTHHHHHTSTT
T ss_pred HHHHHHHHHhcCCh
Confidence 34444445555554
No 166
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=42.87 E-value=2.6e+02 Score=27.57 Aligned_cols=107 Identities=12% Similarity=0.003 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCch----------hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 009975 94 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----------HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAAL 163 (521)
Q Consensus 94 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~----------~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l 163 (521)
....-+..+..+++++++.+...+...+..+...+... .+......+..-+...+....|..|..++..+
T Consensus 314 if~~~l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~~ 393 (596)
T 4f52_E 314 LLQFNMGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQLY 393 (596)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 45555678888888888888888888888777665532 12222222222234577888999999999999
Q ss_pred hhhcChhhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 009975 164 GKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELC 203 (521)
Q Consensus 164 ~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~~~~~l~~i~ 203 (521)
...++++ .+-.++..+.+.+. .+.++..++..+..-+
T Consensus 394 I~~~~~e-~R~~iL~~LL~~~~--~~~v~~~lI~~~KdeI 430 (596)
T 4f52_E 394 INKLDSQ-GKYTLFRCLLNTSN--HSGVEAFIIQNIKNQI 430 (596)
T ss_dssp HHHBCHH-HHHHHHHHHHHHHC--CHHHHHHHHHHHHHHH
T ss_pred HHhCChH-HHHHHHHHHHhcCC--ChHHHHHHHHHHHHHH
Confidence 8888765 44556666655554 4557777777665444
No 167
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=41.50 E-value=1.3e+02 Score=23.70 Aligned_cols=101 Identities=12% Similarity=0.132 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhh-cChhhh
Q 009975 94 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL-LEPQDC 172 (521)
Q Consensus 94 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~-~~~~~~ 172 (521)
.++...+++.++....+. ..++.++..+ ..+.+.+.++..+....-|..+.-|..+...+..+... ++.+..
T Consensus 9 ~~kk~~~ii~EYf~~~D~---~Ea~~~l~eL----~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~~~ls~~~i 81 (165)
T 2rg8_A 9 FEKTLTPIIQEYFEHGDT---NEVAEMLRDL----NLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDV 81 (165)
T ss_dssp HHHHHHHHHHHHHHHCCH---HHHHHHHHHH----TCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBTTTBCHHHH
T ss_pred HHHHHHHHHHHHHcCCCH---HHHHHHHHHh----CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCCCCHHHH
Confidence 566677777776655443 2334444443 23457777888877777788888899999999998654 333323
Q ss_pred hhhhHHHHHHhcCC---CChHHHHHHHHHHHHH
Q 009975 173 VAHILPVIVNFSQD---KSWRVRYMVANQLYEL 202 (521)
Q Consensus 173 ~~~l~~~l~~~~~d---~~~~vR~~~~~~l~~i 202 (521)
.+-+ ..+...+.| +.|.+-...++.+++.
T Consensus 82 ~~Gf-~~lle~ldDl~iDiP~a~~~la~fiara 113 (165)
T 2rg8_A 82 EKSF-DKLLKDLPELALDTPRAPQLVGQFIARA 113 (165)
T ss_dssp HHHH-HHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHH-HHHHHhChhhcccccchHHHHHHHHHHH
Confidence 2222 222333333 3455555555555443
No 168
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=40.95 E-value=1.2e+02 Score=23.21 Aligned_cols=69 Identities=17% Similarity=0.090 Sum_probs=43.4
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhhChhh---hHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 009975 330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 398 (521)
Q Consensus 330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 398 (521)
+.++..+.+.+....+..|..++-.+..++++.|.++ |...+.+.+.......+..+|....+.+..+-
T Consensus 42 ~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~ 113 (144)
T 1sz9_A 42 QYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWL 113 (144)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 4555666555555666777777777777777777542 23334555555555556777777777776665
No 169
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=37.51 E-value=3.6e+02 Score=27.73 Aligned_cols=114 Identities=11% Similarity=0.049 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCc--hhhHHHHHHHHHHhhcC--CChhHHH-HHHHHHHHHhhhcC
Q 009975 94 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQD--DQDSVRL-LAVEGCAALGKLLE 168 (521)
Q Consensus 94 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d--~~~~vr~-~a~~~l~~l~~~~~ 168 (521)
..+.++|.+...+.+++..+...+..++..++...+. +.+.+.++..+..-+.. -.+..|. .+++++..++..+.
T Consensus 336 fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv 415 (799)
T 1vsy_4 336 IVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIV 415 (799)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHh
Confidence 4456677777778899999999999999999864331 44555555555555555 3444444 56788888776654
Q ss_pred h-hhhhhhhHHHHHHh---cCCCChHHHHHHHHHHHHHHHHhC
Q 009975 169 P-QDCVAHILPVIVNF---SQDKSWRVRYMVANQLYELCEAVG 207 (521)
Q Consensus 169 ~-~~~~~~l~~~l~~~---~~d~~~~vR~~~~~~l~~i~~~~~ 207 (521)
. ..+..++.+++..+ ++-.++.--..+.+.+..++..++
T Consensus 416 ~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ip 458 (799)
T 1vsy_4 416 MDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIP 458 (799)
T ss_dssp TSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSC
T ss_pred cCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhcc
Confidence 3 34566777766554 444566666667778888877665
No 170
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.72 E-value=95 Score=20.82 Aligned_cols=34 Identities=12% Similarity=0.126 Sum_probs=27.2
Q ss_pred HhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 009975 485 EKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 518 (521)
Q Consensus 485 ~~~~~~~l~~l~~D~~~~vr~~a~~al~~l~~~~ 518 (521)
.+.++-.|.++..|.++.+|..-.+|+..+..++
T Consensus 43 Lq~Li~~LDev~~~~NpcIReaRRrAV~EvQ~li 76 (89)
T 2d9d_A 43 LQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLI 76 (89)
T ss_dssp HHHHHHHHGGGCSCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 3556667777889999999999999988887665
No 171
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=35.88 E-value=2.3e+02 Score=24.99 Aligned_cols=107 Identities=11% Similarity=0.117 Sum_probs=66.3
Q ss_pred hHHHHHhhhcC-cchHHHHHHHHHHHHhhccc-ChHHH---hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch---
Q 009975 410 ITPQVLEMINN-PHYLYRMTILRAISLLAPVM-GSEIT---CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--- 481 (521)
Q Consensus 410 l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~-~~~~~---~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~~~~--- 481 (521)
++..+...+.+ .++..+..+++++..++..- |...+ .+.+++.+...+.+++.++|.+++..+-+++-....
T Consensus 148 l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~ 227 (304)
T 3ebb_A 148 FSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHN 227 (304)
T ss_dssp HHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCC
Confidence 33333344332 34556888888888887632 22221 245677777777788999999999888777654321
Q ss_pred HHHHhhHHHHHHHhc-CCCCccHHHHHHHHHHHHHH
Q 009975 482 SMVEKTIRPCLVELT-EDPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 482 ~~~~~~~~~~l~~l~-~D~~~~vr~~a~~al~~l~~ 516 (521)
..-...++..+.... ...|.+....+.-|++++..
T Consensus 228 ~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 228 IEGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 111233555555533 44678888888888888774
No 172
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=35.50 E-value=2.5e+02 Score=25.27 Aligned_cols=10 Identities=20% Similarity=0.218 Sum_probs=4.1
Q ss_pred HHHHHhhcCC
Q 009975 295 PIFLSLLKDE 304 (521)
Q Consensus 295 ~~l~~~l~d~ 304 (521)
+.+..+.+|+
T Consensus 206 ~~~~~L~~d~ 215 (351)
T 3gvo_A 206 QHTEQLVQDQ 215 (351)
T ss_dssp TTHHHHHTST
T ss_pred hhHHhcCCCc
Confidence 3334444443
No 173
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=34.89 E-value=2.7e+02 Score=25.57 Aligned_cols=89 Identities=13% Similarity=0.023 Sum_probs=46.3
Q ss_pred hhhHHhhhhcCchhHHHHHHHHHHHHHHhhcChh--HHHHhHHHHHHHhhcCC-CCcchhhhhhhhhhhcCCC----ChH
Q 009975 21 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--DLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSA----PDI 93 (521)
Q Consensus 21 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~--~~~~~l~p~i~~~~~~~-~~~~r~~~~~~~~~~~~~~----~~~ 93 (521)
++--|..+..++|+..|+.....+..+-..+... .++..+-..+.+++.+. .+.--...+..++.+..+. .++
T Consensus 175 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKee 254 (392)
T 2jak_A 175 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 254 (392)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHH
Confidence 3444556667888888888888777776655432 23344444444444432 2222233445555555443 333
Q ss_pred HHHHHHHHHHHhcCCC
Q 009975 94 LKTELRSIYTQLCQDD 109 (521)
Q Consensus 94 ~~~~l~~~l~~l~~~~ 109 (521)
.+..+...+.-+.+.+
T Consensus 255 hk~Fl~~vLlPLhk~~ 270 (392)
T 2jak_A 255 HKIFLLKVLLPLHKVK 270 (392)
T ss_dssp HHHHHHHTTGGGGTSG
T ss_pred HHHHHHHHhHhhccCC
Confidence 3444445555554443
No 174
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=32.84 E-value=1.4e+02 Score=25.56 Aligned_cols=98 Identities=8% Similarity=0.079 Sum_probs=56.8
Q ss_pred cCcchHHHHHHHHHHHHhhcccC--hHHH-----hhcHHHHHHhhcCC----CCchHHHHHHHHHHHHHhhhchH----H
Q 009975 419 NNPHYLYRMTILRAISLLAPVMG--SEIT-----CSRLLPVVINASKD----RVPNIKFNVAKVLQSLIPIVDQS----M 483 (521)
Q Consensus 419 ~~~~~~~r~~a~~~l~~l~~~~~--~~~~-----~~~il~~l~~~l~d----~~~~VR~~a~~~l~~~~~~~~~~----~ 483 (521)
.+.++..++.+++++..+..+-. ...+ ...++..+...+.| ++.++|.+++..+-.++-....+ .
T Consensus 100 ~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~e 179 (253)
T 3gae_A 100 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLE 179 (253)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCTT
T ss_pred CCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchHH
Confidence 35567888999999988886432 2222 12333333333333 36778988888887766543221 1
Q ss_pred HHhhHHHHHHHhcC-----CCCccHHHHHHHHHHHHHH
Q 009975 484 VEKTIRPCLVELTE-----DPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 484 ~~~~~~~~l~~l~~-----D~~~~vr~~a~~al~~l~~ 516 (521)
....+..++..... ..|.+....+.-|++++..
T Consensus 180 ~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 180 LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp HHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 12234444443211 2377888888888888874
No 175
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=31.42 E-value=2.4e+02 Score=25.83 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHhhc-ccChHHH--hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 009975 423 YLYRMTILRAISLLAP-VMGSEIT--CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 478 (521)
Q Consensus 423 ~~~r~~a~~~l~~l~~-~~~~~~~--~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~ 478 (521)
......++.|+..+.. ..|-+.+ .+..+..+..++..+.+.+|..+++.|..++..
T Consensus 134 ~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~ 192 (383)
T 3eg5_B 134 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCIL 192 (383)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhC
Confidence 4556667777777765 2233332 245667777778878888888888888777654
No 176
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=31.34 E-value=2.3e+02 Score=23.67 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHhhc-ccChHHH--hhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 009975 423 YLYRMTILRAISLLAP-VMGSEIT--CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 478 (521)
Q Consensus 423 ~~~r~~a~~~l~~l~~-~~~~~~~--~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~~ 478 (521)
......++.++..+.. ..|-+.+ .+..+..+...+..+.+.+|..+++.|..++..
T Consensus 68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~ 126 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCIL 126 (233)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 3445566666666654 2233322 234566777777777777777777777766543
No 177
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=30.16 E-value=1.7e+02 Score=21.76 Aligned_cols=33 Identities=6% Similarity=0.063 Sum_probs=17.3
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhh
Q 009975 330 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 362 (521)
Q Consensus 330 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~ 362 (521)
+.++..+.+.+......-|...+-.+..+.+..
T Consensus 39 ~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns 71 (132)
T 4flb_A 39 STIVYHWMKWLRRSAYPHRLNLFYLANDVIQNC 71 (132)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Confidence 344444444444444555555555566665554
No 178
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=28.88 E-value=3.1e+02 Score=24.37 Aligned_cols=73 Identities=8% Similarity=0.070 Sum_probs=52.5
Q ss_pred hhHHHHHHHHhc---CCChHHHHHHHHHhHHHHhhhChhhh------HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 009975 330 QSLLPAIVELAE---DRHWRVRLAIIEYIPLLASQLGVGFF------DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 400 (521)
Q Consensus 330 ~~~~~~l~~~~~---~~~~~vr~~~~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 400 (521)
+.+..+-.++++ +..|..|....+.+..+..++-...+ ...++..+.=..++++.+|-..++..+..+...
T Consensus 118 ~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n 197 (321)
T 1w9c_A 118 DAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQN 197 (321)
T ss_dssp HHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 344444445555 36799999999999998877544322 234566666678999999999999999888876
Q ss_pred hC
Q 009975 401 FG 402 (521)
Q Consensus 401 ~~ 402 (521)
++
T Consensus 198 ~~ 199 (321)
T 1w9c_A 198 VA 199 (321)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 179
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=26.74 E-value=2e+02 Score=21.44 Aligned_cols=55 Identities=5% Similarity=0.011 Sum_probs=25.4
Q ss_pred hcCCChHHHHHHHHHHHHhhhhhchhhHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHhhh
Q 009975 301 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 362 (521)
Q Consensus 301 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~ 362 (521)
|+...+.+...+..++...-. .+.++..+.+.+......-|...+-.+..+.++.
T Consensus 16 L~~s~~sI~~~s~w~l~~~~~-------a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns 70 (135)
T 4fu3_A 16 LSNSQQSVQTLSLWLIHHRKH-------AGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNS 70 (135)
T ss_dssp CCSSTTHHHHHHHHHHHTGGG-------HHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 344445555544444443211 1344445544444333444555555555555443
No 180
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=26.71 E-value=6.7e+02 Score=27.52 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHhhcChhHHHHhHHHH
Q 009975 33 ETCVRDKAVESLCRIGSQMRESDLVDWYIPL 63 (521)
Q Consensus 33 ~~~vR~~a~~~l~~i~~~~~~~~~~~~l~p~ 63 (521)
-|..++.....+...++ +.+.++..++|.
T Consensus 55 yp~~v~~F~~gl~~~i~--~~~~~~~~Llp~ 83 (1323)
T 3s4w_B 55 YPKVIEEFVNGLESYTE--DSESLRNCLLSC 83 (1323)
T ss_dssp HHHHHHHHHHHHHHHTT--SHHHHHHHSSBC
T ss_pred chHHHHHHHHHHHHHhc--CHHHHHHHhCCC
Confidence 45667777776666655 333344444433
No 181
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=25.93 E-value=3.7e+02 Score=24.34 Aligned_cols=99 Identities=9% Similarity=0.126 Sum_probs=56.7
Q ss_pred hcCcchHHHHHHHHHHHHhhcccC--hHHHh-----hcHHHHHHhhcC----CCCchHHHHHHHHHHHHHhhhchHHHHh
Q 009975 418 INNPHYLYRMTILRAISLLAPVMG--SEITC-----SRLLPVVINASK----DRVPNIKFNVAKVLQSLIPIVDQSMVEK 486 (521)
Q Consensus 418 l~~~~~~~r~~a~~~l~~l~~~~~--~~~~~-----~~il~~l~~~l~----d~~~~VR~~a~~~l~~~~~~~~~~~~~~ 486 (521)
+.+.++..++.+++++..+...-. ..... ..++..+...+. ..+.++|.+++..+-.++-.........
T Consensus 208 ~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~~ 287 (362)
T 3l3f_X 208 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDL 287 (362)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSCT
T ss_pred cCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccchH
Confidence 335577888899999988876322 22221 223333322222 2356788888888777665433221112
Q ss_pred hHHHHHHHhcC---------CCCccHHHHHHHHHHHHHH
Q 009975 487 TIRPCLVELTE---------DPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 487 ~~~~~l~~l~~---------D~~~~vr~~a~~al~~l~~ 516 (521)
.+.+.+..+++ ..|.+....+.-|+++|..
T Consensus 288 el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 288 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp THHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 23333333222 2488888999999998875
No 182
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=25.90 E-value=4.3e+02 Score=25.04 Aligned_cols=116 Identities=14% Similarity=0.169 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhcChhHHHHhHHHHHHHhhcCCCCc-chhhhhhhhhhhcCCCChHHHHHHHHHHHHhcCCCChHHHHHHH
Q 009975 40 AVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFT-ARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 118 (521)
Q Consensus 40 a~~~l~~i~~~~~~~~~~~~l~p~i~~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~ 118 (521)
..+++-.+......+++.++++-++.+++.++.+. .+.. ++ . ..++... +++......+++....++.
T Consensus 78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~---~f---~-~~~~~~~----~l~~~~~~~dd~~~ll~a~ 146 (480)
T 1ho8_A 78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVK---FF---Q-EDPKQLE----QLFDVSLKGDFQTVLISGF 146 (480)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHH---HH---H-HCTTHHH----HHHHHCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHH---HH---h-hCcccch----HHHHHHhcccchHHHHHHH
Confidence 34556666666777788888888888888875422 2211 11 1 1122211 2333334455667777776
Q ss_pred HhHHHHHHhhCc-hhhHHHHHH--HHHHhhcC-CChhHHHHHHHHHHHHhhh
Q 009975 119 SNLGKFAATVEP-AHLKTDIMS--IFEDLTQD-DQDSVRLLAVEGCAALGKL 166 (521)
Q Consensus 119 ~~l~~l~~~~~~-~~~~~~l~~--~l~~l~~d-~~~~vr~~a~~~l~~l~~~ 166 (521)
..+..++..... +...+.++. .+...+.. ++...+..++.++..+...
T Consensus 147 ~l~~ll~~~~~~~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~ 198 (480)
T 1ho8_A 147 NVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI 198 (480)
T ss_dssp HHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccCCccHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc
Confidence 665555432221 223333444 33333333 2334456677777776543
No 183
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=24.51 E-value=3.2e+02 Score=23.24 Aligned_cols=104 Identities=11% Similarity=0.055 Sum_probs=55.9
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHhhhcC-hh-hh-----hhhhHHHHHHhcCC----CChHHHHHHHHHHHHHHHHhCC
Q 009975 140 IFEDLTQDDQDSVRLLAVEGCAALGKLLE-PQ-DC-----VAHILPVIVNFSQD----KSWRVRYMVANQLYELCEAVGP 208 (521)
Q Consensus 140 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-~~-~~-----~~~l~~~l~~~~~d----~~~~vR~~~~~~l~~i~~~~~~ 208 (521)
++.....+.++..+..+++++.++..+-. .. .. ...++..+.....+ ++..+|-+++..+-.++-....
T Consensus 94 ~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~ 173 (253)
T 3gae_A 94 YIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTK 173 (253)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhh
Confidence 33344445566788888898888876543 11 11 12233333222222 3667888888888877765443
Q ss_pred CccccchHHHHHHhcCC---------ChHHHHHHHHHhHHHHHh
Q 009975 209 EPTRMDLVPAYVRLLRD---------NEAEVRIAAAGKVTKFCR 243 (521)
Q Consensus 209 ~~~~~~l~~~l~~~l~d---------~~~~vr~~a~~~l~~l~~ 243 (521)
+....++...+.+.+.. ++.+....++.++|.+..
T Consensus 174 ~~~~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 174 GNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp SCSCTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 22223333444443321 244566666667776654
No 184
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=24.35 E-value=4.3e+02 Score=24.55 Aligned_cols=100 Identities=9% Similarity=0.131 Sum_probs=57.7
Q ss_pred hhcCcchHHHHHHHHHHHHhhcccC--hHHHh-hcHHHHHHhhcC--------CCCchHHHHHHHHHHHHHhhhchHHHH
Q 009975 417 MINNPHYLYRMTILRAISLLAPVMG--SEITC-SRLLPVVINASK--------DRVPNIKFNVAKVLQSLIPIVDQSMVE 485 (521)
Q Consensus 417 ~l~~~~~~~r~~a~~~l~~l~~~~~--~~~~~-~~il~~l~~~l~--------d~~~~VR~~a~~~l~~~~~~~~~~~~~ 485 (521)
.+.+.++..++.+++++..+...-. ..... +.+.+.++..+. ..+.++|.+++..+-.++-........
T Consensus 270 ~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~ 349 (425)
T 3pst_A 270 GLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD 349 (425)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred hcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch
Confidence 3345678889999999988886322 22221 122344444332 235678888888877766543321111
Q ss_pred hhHHHHHHHhcC---------CCCccHHHHHHHHHHHHHH
Q 009975 486 KTIRPCLVELTE---------DPDVDVRFFATQAIQSIDH 516 (521)
Q Consensus 486 ~~~~~~l~~l~~---------D~~~~vr~~a~~al~~l~~ 516 (521)
..+.+.+..+++ ..|.+....+.-|+++|..
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 223333333222 2488888999999998874
No 185
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=23.68 E-value=5.3e+02 Score=25.33 Aligned_cols=75 Identities=9% Similarity=-0.045 Sum_probs=47.5
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhhcccChH----------HHhhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975 408 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE----------ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 408 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~----------~~~~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~ 477 (521)
..-++.+..+++++...+...++..+..+....... .|...+-....-....+...+|..|..+++.+..
T Consensus 316 ~~~l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~~I~ 395 (596)
T 4f52_E 316 QFNMGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQLYIN 395 (596)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHH
Confidence 334556666778877777777888877777644421 1222111111223456788999999999999888
Q ss_pred hhchH
Q 009975 478 IVDQS 482 (521)
Q Consensus 478 ~~~~~ 482 (521)
.++.+
T Consensus 396 ~~~~e 400 (596)
T 4f52_E 396 KLDSQ 400 (596)
T ss_dssp HBCHH
T ss_pred hCChH
Confidence 77654
No 186
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=21.95 E-value=3.9e+02 Score=24.20 Aligned_cols=104 Identities=12% Similarity=0.108 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHhcCCCChHHHHHHHHhHHHHHHhhCchhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHhhhcCh-h
Q 009975 92 DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-Q 170 (521)
Q Consensus 92 ~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~ 170 (521)
++.++...+++.++..+.+. ..++.++.. +..+.+...++..+....-|....-|..+...|..+...+-+ +
T Consensus 51 ee~~k~~~~ii~EYf~~~d~---~Ea~~~l~e----L~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~~~ls~~ 123 (358)
T 3eiq_C 51 TAFEKTLTPIIQEYFEHGDT---NEVAEMLRD----LNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTN 123 (358)
T ss_dssp HHHHHHHHHHHHHHHHHCCH---HHHHHHHHT----TTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTTTSCCHH
T ss_pred HHHHHHHHHHHHHHhcCCCH---HHHHHHHHH----hCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCCHH
Confidence 34666677777776655443 223333333 333445677778888877788888899999999998865333 3
Q ss_pred hhhhhhHHHHHHhcCC---CChHHHHHHHHHHHHHH
Q 009975 171 DCVAHILPVIVNFSQD---KSWRVRYMVANQLYELC 203 (521)
Q Consensus 171 ~~~~~l~~~l~~~~~d---~~~~vR~~~~~~l~~i~ 203 (521)
...+-+. .+...+.| +.|.+....+..+.+.+
T Consensus 124 ~i~~gf~-~lle~ldDl~lDiP~a~~~la~flaRaV 158 (358)
T 3eiq_C 124 DVEKSFD-KLLKDLPELALDTPRAPQLVGQFIARAV 158 (358)
T ss_dssp HHHHHHH-HHHHTHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHhhhhhccccccHHHHHHHHHHHHH
Confidence 2222222 23333333 34556666666655444
No 187
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=21.81 E-value=5.2e+02 Score=24.51 Aligned_cols=56 Identities=13% Similarity=0.161 Sum_probs=35.6
Q ss_pred chHHHHHHHHHHHHhhcccChHH-Hh--hcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 009975 422 HYLYRMTILRAISLLAPVMGSEI-TC--SRLLPVVINASKDRVPNIKFNVAKVLQSLIP 477 (521)
Q Consensus 422 ~~~~r~~a~~~l~~l~~~~~~~~-~~--~~il~~l~~~l~d~~~~VR~~a~~~l~~~~~ 477 (521)
++.+-..||.=+|.++.+.+... +. -.....++.++.+++++||..|+.++..+..
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 56666777777777777655432 11 1245566777777777777777777766553
No 188
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=20.92 E-value=2e+02 Score=26.15 Aligned_cols=107 Identities=11% Similarity=0.065 Sum_probs=60.4
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHhhhcC-hh-hh-----hhhhHHHHHHhcC----CCChHHHHHHHHHHHHHHHH
Q 009975 137 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE-PQ-DC-----VAHILPVIVNFSQ----DKSWRVRYMVANQLYELCEA 205 (521)
Q Consensus 137 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-~~-~~-----~~~l~~~l~~~~~----d~~~~vR~~~~~~l~~i~~~ 205 (521)
+..++.....+..+..+..+++++.++...-. .. .. ...++..+...+. ..+..+|.+++..+-.++..
T Consensus 200 l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~ 279 (362)
T 3l3f_X 200 IKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSAL 279 (362)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHH
Confidence 44445555555567889999999998876533 11 11 1223333322221 23567888888887777765
Q ss_pred hCCCccccchHHHHHHhcC---------CChHHHHHHHHHhHHHHHh
Q 009975 206 VGPEPTRMDLVPAYVRLLR---------DNEAEVRIAAAGKVTKFCR 243 (521)
Q Consensus 206 ~~~~~~~~~l~~~l~~~l~---------d~~~~vr~~a~~~l~~l~~ 243 (521)
...+.....+.+.+.+++. ..+.+....++-++|.+..
T Consensus 280 ~~~~~~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 280 VTKGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp HHHTCSCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HhcccchHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 4322222345555555444 1355677777777777764
No 189
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=20.78 E-value=4.9e+02 Score=23.79 Aligned_cols=29 Identities=7% Similarity=-0.042 Sum_probs=15.4
Q ss_pred hHHHHHhhhcCcchHHHHHHHHHHHHhhc
Q 009975 410 ITPQVLEMINNPHYLYRMTILRAISLLAP 438 (521)
Q Consensus 410 l~~~l~~~l~~~~~~~r~~a~~~l~~l~~ 438 (521)
.+..+...+.+++..+|..+++.+..++.
T Consensus 163 ~i~~l~~~L~s~~~~~~~~aleLL~~lc~ 191 (383)
T 3eg5_B 163 GILLLVRAMDPAVPNMMIDAAKLLSALCI 191 (383)
T ss_dssp HHHHHHHTCCTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHh
Confidence 44445555555555555555555555543
Done!