BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009977
         (521 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
          Length = 1134

 Score = 35.4 bits (80), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 312 YTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCR----AGRVDEALELL 367
           Y  +M G+ ++G  +E   V   +K+  L PD + Y   + C  R    AG ++  LE  
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLE-- 225

Query: 368 KEMKERGCKADIVTFNIILG 387
            +M + G K   +   ++L 
Sbjct: 226 -QMSQEGLKLQALFTAVLLS 244


>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Ca
          Length = 501

 Score = 33.1 bits (74), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 21/128 (16%)

Query: 356 RAGRVDEALELLKEMKERGCKADIVTFNIIL---------------GGLCREGKIEEALG 400
           + G V EAL L  E +  G +     +N++L                GL R         
Sbjct: 38  KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR------GFD 91

Query: 401 MLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLC 460
           + +++  D +  N+A++      +  K + E A ++++ M   G  P   +    L   C
Sbjct: 92  IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFC 151

Query: 461 KAGMAEDA 468
           + G A+ A
Sbjct: 152 RKGDADKA 159



 Score = 32.7 bits (73), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 67/179 (37%), Gaps = 39/179 (21%)

Query: 216 GTLESAFEVL--KEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD 273
           G + S  E L  K  KK+    P  +    L D   K G   EA+ L++E   ++ +   
Sbjct: 3   GHMASPSENLSRKAKKKAIQQSPEALLKQKL-DMCSKKGDVLEALRLYDE-ARRNGVQLS 60

Query: 274 ALTYNVLI---------------DGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNG 318
              YNVL+                G  RG          +  K    +  V N  T  NG
Sbjct: 61  QYHYNVLLYVCSLAEAATESSPNPGLSRG---------FDIFKQMIVDKVVPNEATFTNG 111

Query: 319 FCKEGKLQEAKE----VFD---EMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEM 370
                +L  AK+     FD   +MK F ++P    Y   +  FCR G  D+A E+   M
Sbjct: 112 ----ARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166



 Score = 30.4 bits (67), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 197 RLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFRE 256
           ++ PN   F    +    +   E AF+++K+MK   +  P L +Y   + G C+ G   +
Sbjct: 100 KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ-PRLRSYGPALFGFCRKGDADK 158

Query: 257 AIELFEEM 264
           A E+   M
Sbjct: 159 AYEVDAHM 166


>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
           Complex With Gdp And Folinic Acid
 pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
           Complex With Gcp
 pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
           Complex With Gcp
 pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
           Complex With Gcp
          Length = 476

 Score = 32.3 bits (72), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 252 GRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGC---NPN 308
           GR  +  E+ +E+++     P + T   +++  C GG V    +++  M +NGC    P 
Sbjct: 68  GRLYDGEEMVDEVIALVFRAPRSFTAEQMVEFTCHGGPV-VVGRVLRLMLDNGCRLAEPG 126

Query: 309 VFNYTTLMNG 318
            F     +NG
Sbjct: 127 EFTRRAFLNG 136


>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
           Recognition Particle Receptor From The Archaeon
           Pyrococcus Furiosus
 pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
           Recognition Particle Receptor From The Archaeon
           Pyrococcus Furiosus
 pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
           Recognition Particle Receptor From The Archaeon
           Pyrococcus Furiosus
 pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
           Recognition Particle Receptor From The Archaeon
           Pyrococcus Furiosus
          Length = 328

 Score = 32.3 bits (72), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 24/171 (14%)

Query: 258 IELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMN 317
           I+L EE+   ++       Y ++  GF   GK     K+  ++KN+G +  +    T   
Sbjct: 117 IDLIEEIRKAEK------PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRA 170

Query: 318 GFCKEGKLQE-AKEVFDEM--KNFLLKPDTIGYTTLINCFCR---------AGRVDEALE 365
           G  ++  L+E AK +  ++   ++   P  + Y  + +   R         AGR +    
Sbjct: 171 GAIEQ--LEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRN 228

Query: 366 LLKEMKE--RGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNK 414
           L+ EMK+  R  K ++V F  +   L     +E+A    E +  DGI L K
Sbjct: 229 LMDEMKKIARVTKPNLVIF--VGDALAGNAIVEQARQFNEAVKIDGIILTK 277


>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana, Semet Substituted Form With Sr
          Length = 501

 Score = 31.6 bits (70), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 57/159 (35%), Gaps = 29/159 (18%)

Query: 226 KEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLI---- 281
           K  KK+    P  +    L D   K G   EA+ L++E   ++ +      YNVL+    
Sbjct: 15  KAKKKAIQQSPEALLKQKL-DXCSKKGDVLEALRLYDE-ARRNGVQLSQYHYNVLLYVCS 72

Query: 282 -----------DGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKE 330
                       G  RG          +  K    +  V N  T  NG        + + 
Sbjct: 73  LAEAATESSPNPGLSRG---------FDIFKQXIVDKVVPNEATFTNGARLAVAKDDPEX 123

Query: 331 VFDEMKN---FLLKPDTIGYTTLINCFCRAGRVDEALEL 366
            FD +K    F ++P    Y   +  FCR G  D+A E+
Sbjct: 124 AFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162



 Score = 28.9 bits (63), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 22/142 (15%)

Query: 342 PDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIIL--------------- 386
           P+ +    L  C  + G V EAL L  E +  G +     +N++L               
Sbjct: 25  PEALLKQKLDXC-SKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPN 83

Query: 387 GGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFL 446
            GL R         + ++   D +  N+A++      +  K + E A + ++     G  
Sbjct: 84  PGLSR------GFDIFKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQ 137

Query: 447 PHYATSNELLVRLCKAGMAEDA 468
           P   +    L   C+ G A+ A
Sbjct: 138 PRLRSYGPALFGFCRKGDADKA 159


>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
           Aquifex Aeolicus Vf5
 pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
           Aquifex Aeolicus Vf5
          Length = 375

 Score = 30.4 bits (67), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 14/95 (14%)

Query: 108 YKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLK 167
           Y K   +D+V + +  ET     GI + +++      ++E   +   K+  I +EK  L 
Sbjct: 156 YAKLNDIDSVYKLLDEETA----GIIIEVIQ--GEGGVNEASEDFLSKLQEICKEKDVL- 208

Query: 168 AISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNT 202
                  L+I+  Q  + +    Y+ QH  LKP+ 
Sbjct: 209 -------LIIDEVQTGIGRTGEFYAYQHFNLKPDV 236


>pdb|2DH4|A Chain A, Geranylgeranyl Pyrophosphate Synthase
 pdb|2DH4|B Chain B, Geranylgeranyl Pyrophosphate Synthase
 pdb|2E8T|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium, Fspp And Ipp
 pdb|2E8T|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium, Fspp And Ipp
 pdb|2E8U|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Ipp (P21)
 pdb|2E8U|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Ipp (P21)
 pdb|2E8V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Product Ggpp (P21)
 pdb|2E8V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Product Ggpp (P21)
 pdb|2E8W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Ipp
 pdb|2E8W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Ipp
 pdb|2E8X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Gpp
 pdb|2E8X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Gpp
 pdb|2E90|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium, Pyrophosphate And Fpp
 pdb|2E90|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium, Pyrophosphate And Fpp
 pdb|2E91|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Bph-91
 pdb|2E91|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Bph-91
 pdb|2E92|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Bph-261
 pdb|2E92|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Bph-261
 pdb|2E93|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Bph-629
 pdb|2E93|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Bph-629
 pdb|2E94|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Bph-364
 pdb|2E94|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Bph-364
 pdb|2E95|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Bph-675
 pdb|2E95|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Bph-675
 pdb|2Z7H|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Inhibitor Bph-210
 pdb|2Z7H|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Inhibitor Bph-210
 pdb|2Z4V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Ggpp (Inhibitory Site)
 pdb|2Z4V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Ggpp (Inhibitory Site)
 pdb|2Z4W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Bph-749
 pdb|2Z4W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Bph-749
 pdb|2Z4X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Bph-252 (P21)
 pdb|2Z4X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Bph-252 (P21)
 pdb|2Z4Y|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Bph-252
 pdb|2Z4Y|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Bph-252
 pdb|2Z4Z|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Bph-Sc01
 pdb|2Z4Z|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Bph-Sc01
 pdb|2Z50|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Bph-28
 pdb|2Z50|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Bph-28
 pdb|2Z52|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Bph-23
 pdb|2Z52|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium And Bph-23
 pdb|2Z78|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Bph-806
 pdb|2Z78|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Bph-806
 pdb|2Z7I|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Inhibitor Bph-742
 pdb|2Z7I|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Inhibitor Bph-742
 pdb|2ZEU|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Bph-715
 pdb|2ZEU|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Bph-715
 pdb|2ZEV|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium, Ipp And Bph-715
 pdb|2ZEV|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
           Complex With Magnesium, Ipp And Bph-715
          Length = 340

 Score = 29.6 bits (65), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 2/43 (4%)

Query: 403 EKLWYDGIYLNKASYRIV--LNFSCQKGELEKAIELLRLMLCR 443
           EK + + I   K S+ IV  LNF+  KG+ E+  E+LR++L R
Sbjct: 227 EKGFAEDITEGKLSFPIVHALNFTKTKGQTEQHNEILRILLLR 269


>pdb|1LY1|A Chain A, Structure And Mechanism Of T4 Polynucleotide Kinase
          Length = 181

 Score = 28.5 bits (62), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 208 LIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYS 242
           L+K + KRGT     +VL+ M KS   Y  L  Y+
Sbjct: 119 LVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYN 153


>pdb|2DFL|A Chain A, Crystal Structure Of Left-Handed Rada Filament
 pdb|2Z43|A Chain A, Structure Of A Twinned Crystal Of Rada
 pdb|2Z43|B Chain B, Structure Of A Twinned Crystal Of Rada
 pdb|2Z43|C Chain C, Structure Of A Twinned Crystal Of Rada
 pdb|2ZUB|A Chain A, Left Handed Rada
 pdb|2ZUB|B Chain B, Left Handed Rada
 pdb|2ZUC|A Chain A, Crystal Structure Of Left-Handed Rada Filament
 pdb|2ZUC|B Chain B, Crystal Structure Of Left-Handed Rada Filament
 pdb|2ZUD|A Chain A, Crystal Structure Of Left-Handed Rada Filament
 pdb|2ZUD|B Chain B, Crystal Structure Of Left-Handed Rada Filament
          Length = 324

 Score = 28.5 bits (62), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG-RFREAIELFEEMVSKDQILPD 273
           R  L+  F+   E+KK +M+   + T S  +DGL   G   R   E F E  S    L  
Sbjct: 66  RDALDIRFKTALEVKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCH 125

Query: 274 ALTYNV 279
            L+ NV
Sbjct: 126 QLSVNV 131


>pdb|2IA5|A Chain A, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
           Magnesium.
 pdb|2IA5|B Chain B, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
           Magnesium.
 pdb|2IA5|C Chain C, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
           Magnesium.
 pdb|2IA5|D Chain D, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
           Magnesium.
 pdb|2IA5|E Chain E, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
           Magnesium.
 pdb|2IA5|F Chain F, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
           Magnesium.
 pdb|2IA5|G Chain G, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
           Magnesium.
 pdb|2IA5|H Chain H, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
           Magnesium.
 pdb|2IA5|I Chain I, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
           Magnesium.
 pdb|2IA5|J Chain J, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
           Magnesium.
 pdb|2IA5|K Chain K, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
           Magnesium.
 pdb|2IA5|L Chain L, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
           Magnesium
          Length = 301

 Score = 28.5 bits (62), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 208 LIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYS 242
           L+K + KRGT     +VL+ M KS   Y  L  Y+
Sbjct: 119 LVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYN 153


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,639,478
Number of Sequences: 62578
Number of extensions: 584871
Number of successful extensions: 1468
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1451
Number of HSP's gapped (non-prelim): 20
length of query: 521
length of database: 14,973,337
effective HSP length: 103
effective length of query: 418
effective length of database: 8,527,803
effective search space: 3564621654
effective search space used: 3564621654
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)