Query 009977
Match_columns 521
No_of_seqs 715 out of 3038
Neff 11.6
Searched_HMMs 46136
Date Thu Mar 28 19:34:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.6E-63 7.8E-68 501.8 57.4 452 57-514 435-910 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 3.1E-62 6.6E-67 495.1 60.6 453 56-515 367-843 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 4.5E-61 9.7E-66 484.6 52.7 437 57-514 85-558 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 1E-59 2.2E-64 486.1 49.9 448 51-511 144-652 (857)
5 PLN03081 pentatricopeptide (PP 100.0 1.4E-59 2.9E-64 473.9 46.7 407 56-484 120-563 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 1.3E-58 2.8E-63 477.9 50.1 444 50-515 244-688 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.9E-31 8.5E-36 280.2 56.0 431 61-511 467-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-30 4.6E-35 274.6 55.9 439 61-517 365-803 (899)
9 KOG4626 O-linked N-acetylgluco 100.0 2.7E-26 5.9E-31 207.4 34.6 435 62-517 51-489 (966)
10 PRK11447 cellulose synthase su 100.0 1E-23 2.2E-28 224.0 52.9 430 65-512 275-739 (1157)
11 PRK11447 cellulose synthase su 100.0 4.2E-23 9.1E-28 219.3 56.2 443 58-514 61-701 (1157)
12 KOG4626 O-linked N-acetylgluco 100.0 1.5E-24 3.3E-29 196.2 33.5 406 67-494 90-500 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 3.1E-22 6.7E-27 199.9 49.1 401 62-478 130-571 (615)
14 PRK10049 pgaA outer membrane p 99.9 1.6E-21 3.4E-26 198.2 45.2 405 99-519 19-462 (765)
15 PRK11788 tetratricopeptide rep 99.9 2.2E-22 4.8E-27 191.2 36.3 294 211-512 44-346 (389)
16 PRK15174 Vi polysaccharide exp 99.9 1.7E-21 3.8E-26 193.6 44.0 361 104-478 14-381 (656)
17 PRK11788 tetratricopeptide rep 99.9 2.5E-22 5.5E-27 190.8 35.5 303 139-450 44-354 (389)
18 PRK15174 Vi polysaccharide exp 99.9 1.1E-20 2.4E-25 187.9 45.1 385 68-478 14-403 (656)
19 PRK09782 bacteriophage N4 rece 99.9 1.1E-19 2.3E-24 185.0 51.7 192 320-519 520-712 (987)
20 PRK10049 pgaA outer membrane p 99.9 3.2E-20 7E-25 188.7 46.3 413 65-494 21-470 (765)
21 PRK14574 hmsH outer membrane p 99.9 3.5E-19 7.5E-24 177.6 51.4 438 65-519 40-519 (822)
22 TIGR00990 3a0801s09 mitochondr 99.9 5.8E-19 1.3E-23 176.4 48.6 374 57-443 158-571 (615)
23 PRK09782 bacteriophage N4 rece 99.9 4.4E-18 9.5E-23 173.3 52.9 429 65-517 188-744 (987)
24 KOG2002 TPR-containing nuclear 99.9 4.3E-19 9.4E-24 169.4 40.6 451 59-519 270-751 (1018)
25 KOG2002 TPR-containing nuclear 99.9 5.1E-18 1.1E-22 162.2 41.3 443 61-516 309-801 (1018)
26 PRK14574 hmsH outer membrane p 99.9 6.3E-17 1.4E-21 161.6 49.6 413 64-491 73-524 (822)
27 KOG2003 TPR repeat-containing 99.8 3.6E-16 7.7E-21 137.4 32.0 442 66-518 208-694 (840)
28 KOG2076 RNA polymerase III tra 99.8 5.1E-15 1.1E-19 141.0 40.9 368 102-477 146-554 (895)
29 KOG1915 Cell cycle control pro 99.8 1.7E-13 3.6E-18 121.5 45.2 419 58-492 72-548 (677)
30 KOG0495 HAT repeat protein [RN 99.8 1.8E-13 3.9E-18 125.9 46.7 433 64-516 411-883 (913)
31 KOG2076 RNA polymerase III tra 99.8 5.5E-14 1.2E-18 134.2 44.4 330 68-405 148-509 (895)
32 KOG0495 HAT repeat protein [RN 99.8 2.1E-13 4.4E-18 125.6 45.3 429 71-517 388-850 (913)
33 KOG1915 Cell cycle control pro 99.8 4.2E-13 9E-18 119.0 44.8 408 92-515 70-538 (677)
34 KOG2003 TPR repeat-containing 99.8 6.2E-15 1.3E-19 129.7 31.8 421 66-499 244-709 (840)
35 KOG4422 Uncharacterized conser 99.8 4.2E-13 9.2E-18 117.5 42.2 325 59-409 116-463 (625)
36 KOG1155 Anaphase-promoting com 99.8 1.3E-13 2.8E-18 121.9 39.0 366 127-512 161-535 (559)
37 KOG1155 Anaphase-promoting com 99.8 1.5E-13 3.3E-18 121.5 39.0 367 92-476 161-534 (559)
38 COG2956 Predicted N-acetylgluc 99.8 1.5E-14 3.3E-19 121.9 31.1 291 215-513 48-347 (389)
39 PF13429 TPR_15: Tetratricopep 99.7 8.5E-18 1.8E-22 151.1 11.8 260 66-335 15-274 (280)
40 KOG4422 Uncharacterized conser 99.7 1.3E-12 2.8E-17 114.6 42.6 324 96-444 117-463 (625)
41 PRK10747 putative protoheme IX 99.7 5.4E-14 1.2E-18 132.3 37.0 284 215-513 97-390 (398)
42 KOG0547 Translocase of outer m 99.7 2.6E-14 5.7E-19 127.0 31.6 398 62-476 118-564 (606)
43 TIGR00540 hemY_coli hemY prote 99.7 3.7E-14 7.9E-19 134.2 35.3 291 213-512 95-398 (409)
44 TIGR00540 hemY_coli hemY prote 99.7 6.7E-14 1.5E-18 132.4 36.2 293 177-477 95-398 (409)
45 PRK10747 putative protoheme IX 99.7 1.1E-13 2.4E-18 130.2 36.5 285 179-477 97-389 (398)
46 COG2956 Predicted N-acetylgluc 99.7 6E-14 1.3E-18 118.3 30.4 292 143-443 48-347 (389)
47 KOG1126 DNA-binding cell divis 99.7 5.4E-15 1.2E-19 136.6 25.3 284 218-515 335-622 (638)
48 PF13429 TPR_15: Tetratricopep 99.7 6.8E-17 1.5E-21 145.3 12.6 17 102-118 15-31 (280)
49 KOG1126 DNA-binding cell divis 99.7 9.8E-15 2.1E-19 134.9 23.7 288 144-447 333-622 (638)
50 KOG1173 Anaphase-promoting com 99.6 6.7E-12 1.5E-16 114.1 35.8 440 61-518 18-523 (611)
51 COG3071 HemY Uncharacterized e 99.6 4.2E-12 9E-17 110.8 33.1 285 215-511 97-388 (400)
52 COG3071 HemY Uncharacterized e 99.6 8E-12 1.7E-16 109.0 32.8 287 179-478 97-390 (400)
53 KOG3785 Uncharacterized conser 99.6 1.1E-11 2.4E-16 106.1 32.9 425 66-517 29-494 (557)
54 KOG2047 mRNA splicing factor [ 99.6 4E-10 8.7E-15 104.2 43.6 437 61-512 104-614 (835)
55 KOG4162 Predicted calmodulin-b 99.6 4.3E-11 9.3E-16 112.9 38.0 420 90-521 318-791 (799)
56 KOG1173 Anaphase-promoting com 99.6 7.6E-11 1.6E-15 107.4 36.6 418 63-495 53-533 (611)
57 KOG1174 Anaphase-promoting com 99.6 3.8E-10 8.2E-15 98.9 39.0 272 236-517 230-504 (564)
58 KOG1129 TPR repeat-containing 99.6 5.7E-13 1.2E-17 112.6 20.7 237 278-520 227-465 (478)
59 KOG0547 Translocase of outer m 99.6 4.7E-11 1E-15 106.7 32.0 397 97-512 117-565 (606)
60 PRK12370 invasion protein regu 99.6 1E-11 2.2E-16 122.3 30.6 250 217-478 276-535 (553)
61 KOG1156 N-terminal acetyltrans 99.5 8.3E-10 1.8E-14 102.4 39.7 426 70-514 18-469 (700)
62 PRK12370 invasion protein regu 99.5 1.9E-11 4.1E-16 120.3 31.2 270 236-517 254-539 (553)
63 TIGR02521 type_IV_pilW type IV 99.5 1.3E-11 2.8E-16 108.5 26.6 89 315-405 141-229 (234)
64 PF12569 NARP1: NMDA receptor- 99.5 9.9E-10 2.1E-14 104.5 39.4 428 65-509 10-516 (517)
65 TIGR02521 type_IV_pilW type IV 99.5 1.7E-11 3.7E-16 107.7 25.8 196 98-300 34-229 (234)
66 PF12569 NARP1: NMDA receptor- 99.5 1.6E-10 3.4E-15 109.9 33.3 293 172-476 10-332 (517)
67 KOG1174 Anaphase-promoting com 99.5 2.9E-09 6.2E-14 93.5 37.4 395 64-484 102-504 (564)
68 KOG1156 N-terminal acetyltrans 99.5 4.1E-09 8.8E-14 97.9 40.0 421 69-512 51-510 (700)
69 KOG1129 TPR repeat-containing 99.5 4.5E-12 9.7E-17 107.3 18.6 227 172-407 229-457 (478)
70 KOG3785 Uncharacterized conser 99.5 1E-09 2.2E-14 94.4 32.6 390 64-487 62-497 (557)
71 KOG2047 mRNA splicing factor [ 99.5 9.8E-09 2.1E-13 95.3 40.2 408 95-515 102-581 (835)
72 KOG4318 Bicoid mRNA stability 99.4 2.3E-10 5E-15 109.6 27.3 245 53-321 19-283 (1088)
73 COG3063 PilF Tfp pilus assembl 99.4 4.1E-10 8.9E-15 91.2 24.7 199 169-373 38-236 (250)
74 KOG2376 Signal recognition par 99.4 1.5E-08 3.2E-13 93.3 36.8 227 66-309 19-258 (652)
75 KOG0548 Molecular co-chaperone 99.4 3.4E-09 7.4E-14 96.4 31.3 416 67-517 10-459 (539)
76 KOG4340 Uncharacterized conser 99.4 4.7E-09 1E-13 88.3 29.6 287 214-513 124-443 (459)
77 COG3063 PilF Tfp pilus assembl 99.4 5.5E-10 1.2E-14 90.4 23.0 195 277-475 38-233 (250)
78 KOG4162 Predicted calmodulin-b 99.4 1.2E-08 2.6E-13 96.8 35.0 406 59-478 323-783 (799)
79 PRK11189 lipoprotein NlpI; Pro 99.4 3E-09 6.4E-14 96.0 29.6 218 181-409 41-266 (296)
80 PRK11189 lipoprotein NlpI; Pro 99.4 1.8E-09 4E-14 97.3 27.8 194 276-479 66-266 (296)
81 KOG0624 dsRNA-activated protei 99.4 3.1E-08 6.6E-13 85.1 33.0 194 244-443 161-370 (504)
82 KOG1840 Kinesin light chain [C 99.3 1.2E-09 2.6E-14 102.6 25.7 236 276-511 201-477 (508)
83 KOG1840 Kinesin light chain [C 99.3 5.5E-10 1.2E-14 104.9 23.1 250 122-371 191-477 (508)
84 cd05804 StaR_like StaR_like; a 99.3 4.4E-08 9.5E-13 92.0 36.2 94 277-371 117-213 (355)
85 cd05804 StaR_like StaR_like; a 99.3 3.9E-08 8.4E-13 92.3 34.6 307 202-513 6-336 (355)
86 KOG4318 Bicoid mRNA stability 99.3 2.5E-09 5.4E-14 102.7 24.3 274 81-394 12-286 (1088)
87 PRK04841 transcriptional regul 99.3 1.3E-07 2.9E-12 100.4 40.0 373 137-514 348-761 (903)
88 PRK04841 transcriptional regul 99.2 2.2E-07 4.8E-12 98.7 39.5 341 137-479 381-761 (903)
89 KOG0624 dsRNA-activated protei 99.2 1.5E-07 3.3E-12 81.0 30.2 199 168-373 40-252 (504)
90 KOG4340 Uncharacterized conser 99.2 1E-07 2.2E-12 80.4 28.1 395 61-478 12-443 (459)
91 KOG0985 Vesicle coat protein c 99.2 1.5E-06 3.3E-11 85.3 38.5 262 203-504 1105-1374(1666)
92 KOG2376 Signal recognition par 99.2 3.5E-07 7.6E-12 84.5 32.4 421 61-508 48-515 (652)
93 PF13041 PPR_2: PPR repeat fam 99.2 7.9E-11 1.7E-15 74.0 6.5 49 342-390 1-49 (50)
94 KOG3617 WD40 and TPR repeat-co 99.2 1.1E-06 2.4E-11 84.4 36.1 53 464-516 1306-1362(1416)
95 PF13041 PPR_2: PPR repeat fam 99.2 1.4E-10 3.1E-15 72.8 6.6 49 377-425 1-49 (50)
96 KOG1127 TPR repeat-containing 99.2 3.1E-07 6.8E-12 89.8 32.0 187 73-266 472-658 (1238)
97 KOG1125 TPR repeat-containing 99.2 6.1E-09 1.3E-13 95.7 19.4 140 222-364 414-562 (579)
98 PF04733 Coatomer_E: Coatomer 99.1 4.4E-09 9.6E-14 93.3 17.2 22 208-229 137-158 (290)
99 KOG0548 Molecular co-chaperone 99.1 1.7E-07 3.6E-12 85.7 27.0 192 312-518 227-426 (539)
100 KOG1127 TPR repeat-containing 99.1 1.4E-07 3.1E-12 92.1 27.9 151 288-441 830-994 (1238)
101 KOG3616 Selective LIM binding 99.1 1.8E-07 3.9E-12 88.5 27.8 75 386-472 857-931 (1636)
102 KOG3617 WD40 and TPR repeat-co 99.1 1.5E-06 3.3E-11 83.5 33.6 394 59-509 726-1170(1416)
103 KOG1125 TPR repeat-containing 99.1 2.5E-08 5.5E-13 91.7 21.2 258 135-402 290-565 (579)
104 PF04733 Coatomer_E: Coatomer 99.1 9.8E-09 2.1E-13 91.1 17.9 252 104-374 10-266 (290)
105 KOG3616 Selective LIM binding 99.1 5.6E-07 1.2E-11 85.3 28.2 192 174-402 714-905 (1636)
106 KOG1128 Uncharacterized conser 99.0 7.3E-08 1.6E-12 91.1 22.2 222 127-373 395-616 (777)
107 PLN02789 farnesyltranstransfer 99.0 5.3E-07 1.1E-11 81.2 26.9 204 214-425 49-266 (320)
108 PLN02789 farnesyltranstransfer 99.0 5.2E-07 1.1E-11 81.3 26.6 213 241-460 40-266 (320)
109 KOG1914 mRNA cleavage and poly 99.0 2E-05 4.3E-10 72.6 38.5 154 360-515 347-503 (656)
110 KOG1128 Uncharacterized conser 99.0 2.1E-07 4.6E-12 88.1 23.0 220 271-512 395-615 (777)
111 KOG0985 Vesicle coat protein c 99.0 6.3E-06 1.4E-10 81.1 32.6 323 94-476 983-1306(1666)
112 KOG1070 rRNA processing protei 98.9 1.1E-06 2.4E-11 89.1 27.0 206 238-447 1458-1667(1710)
113 KOG1070 rRNA processing protei 98.9 8.4E-07 1.8E-11 89.9 25.9 227 168-401 1460-1693(1710)
114 TIGR03302 OM_YfiO outer membra 98.9 7.2E-07 1.6E-11 78.2 21.7 188 202-408 33-232 (235)
115 COG5010 TadD Flp pilus assembl 98.9 7E-07 1.5E-11 74.5 19.8 156 171-333 71-226 (257)
116 TIGR03302 OM_YfiO outer membra 98.9 5.3E-07 1.1E-11 79.0 20.7 59 279-337 171-231 (235)
117 COG5010 TadD Flp pilus assembl 98.9 6.2E-07 1.3E-11 74.8 18.9 159 134-300 70-228 (257)
118 KOG3081 Vesicle coat complex C 98.9 4.8E-06 1E-10 69.6 23.4 118 209-338 115-236 (299)
119 KOG3081 Vesicle coat complex C 98.8 1.1E-05 2.4E-10 67.5 24.9 48 360-408 189-236 (299)
120 PRK10370 formate-dependent nit 98.8 1E-06 2.2E-11 73.9 19.4 155 316-487 23-181 (198)
121 PRK10370 formate-dependent nit 98.8 1.7E-06 3.7E-11 72.6 20.2 119 180-304 53-174 (198)
122 PRK14720 transcript cleavage f 98.8 4.1E-06 9E-11 84.2 25.1 239 163-460 28-268 (906)
123 KOG1914 mRNA cleavage and poly 98.8 0.00015 3.2E-09 67.1 39.4 438 58-504 19-530 (656)
124 PRK15179 Vi polysaccharide bio 98.7 5.5E-06 1.2E-10 82.5 24.5 160 163-336 83-243 (694)
125 PRK15359 type III secretion sy 98.7 5.5E-07 1.2E-11 71.4 14.4 107 365-478 14-121 (144)
126 COG4783 Putative Zn-dependent 98.7 5E-05 1.1E-09 69.4 27.9 143 208-373 312-454 (484)
127 PRK15359 type III secretion sy 98.7 1.1E-06 2.4E-11 69.6 15.6 95 205-303 27-121 (144)
128 PRK14720 transcript cleavage f 98.7 1.4E-05 3E-10 80.5 26.5 169 128-337 29-197 (906)
129 KOG3060 Uncharacterized conser 98.7 1.3E-05 2.7E-10 66.6 21.3 163 169-338 55-220 (289)
130 KOG2053 Mitochondrial inherita 98.7 0.00042 9.1E-09 68.1 43.5 219 71-304 21-256 (932)
131 PRK15179 Vi polysaccharide bio 98.7 5.3E-06 1.1E-10 82.6 22.1 135 92-231 83-217 (694)
132 KOG3060 Uncharacterized conser 98.5 9.6E-05 2.1E-09 61.5 22.2 189 72-267 25-220 (289)
133 PF12854 PPR_1: PPR repeat 98.5 1.5E-07 3.3E-12 52.8 3.8 32 197-228 2-33 (34)
134 TIGR02552 LcrH_SycD type III s 98.5 6.5E-06 1.4E-10 64.9 14.7 96 204-303 19-114 (135)
135 KOG0550 Molecular chaperone (D 98.5 0.00018 4E-09 64.2 24.3 281 65-373 55-350 (486)
136 PF12854 PPR_1: PPR repeat 98.5 2.3E-07 4.9E-12 52.1 4.0 32 90-121 2-33 (34)
137 TIGR02552 LcrH_SycD type III s 98.5 1.4E-05 3.1E-10 63.0 15.4 94 241-337 20-113 (135)
138 KOG2041 WD40 repeat protein [G 98.4 0.00072 1.6E-08 64.6 27.2 192 74-298 678-876 (1189)
139 COG4783 Putative Zn-dependent 98.4 0.00011 2.3E-09 67.3 21.2 120 175-300 315-434 (484)
140 KOG2053 Mitochondrial inherita 98.4 0.003 6.5E-08 62.4 40.8 201 61-268 43-256 (932)
141 PF09976 TPR_21: Tetratricopep 98.3 4E-05 8.8E-10 61.0 15.4 127 381-510 14-144 (145)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.1E-05 6.8E-10 71.4 15.5 124 169-301 172-295 (395)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.8E-05 8.1E-10 70.8 15.7 125 204-336 171-295 (395)
144 PF09976 TPR_21: Tetratricopep 98.3 6.3E-05 1.4E-09 59.9 15.2 87 208-298 54-142 (145)
145 KOG0550 Molecular chaperone (D 98.3 0.00018 3.8E-09 64.3 18.4 281 204-515 51-352 (486)
146 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.8E-05 8.3E-10 58.9 11.9 99 419-517 7-109 (119)
147 COG4700 Uncharacterized protei 98.2 0.00057 1.2E-08 54.2 17.5 150 68-223 65-214 (251)
148 TIGR02795 tol_pal_ybgF tol-pal 98.2 0.00011 2.3E-09 56.4 13.7 100 204-303 4-105 (119)
149 PRK15363 pathogenicity island 98.1 9.1E-05 2E-09 57.8 12.7 98 202-303 35-132 (157)
150 PRK15363 pathogenicity island 98.1 0.0001 2.2E-09 57.5 12.6 96 380-477 36-131 (157)
151 PRK02603 photosystem I assembl 98.1 0.00033 7.2E-09 57.7 16.1 62 241-302 38-100 (172)
152 PF14938 SNAP: Soluble NSF att 98.1 0.00025 5.4E-09 63.6 16.5 26 205-230 158-183 (282)
153 COG4700 Uncharacterized protei 98.1 0.0019 4.1E-08 51.3 18.7 130 341-472 86-216 (251)
154 cd00189 TPR Tetratricopeptide 98.1 0.00011 2.3E-09 53.6 11.6 97 417-515 3-99 (100)
155 PF12895 Apc3: Anaphase-promot 98.0 1E-05 2.2E-10 57.5 5.1 20 280-299 31-50 (84)
156 PF14938 SNAP: Soluble NSF att 98.0 0.0013 2.7E-08 59.2 19.7 94 244-337 120-224 (282)
157 cd00189 TPR Tetratricopeptide 98.0 0.00012 2.6E-09 53.4 11.2 90 208-301 6-95 (100)
158 COG3898 Uncharacterized membra 98.0 0.0096 2.1E-07 53.3 30.3 287 143-447 97-396 (531)
159 KOG2041 WD40 repeat protein [G 98.0 0.017 3.6E-07 55.7 29.1 214 111-368 679-902 (1189)
160 PRK10866 outer membrane biogen 98.0 0.0055 1.2E-07 53.4 22.5 66 100-166 37-105 (243)
161 PF12895 Apc3: Anaphase-promot 98.0 1.8E-05 4E-10 56.1 5.9 20 208-227 31-50 (84)
162 KOG1130 Predicted G-alpha GTPa 98.0 0.0001 2.2E-09 65.7 10.9 288 66-371 24-342 (639)
163 CHL00033 ycf3 photosystem I as 97.9 0.00036 7.8E-09 57.3 13.7 82 202-285 35-117 (168)
164 CHL00033 ycf3 photosystem I as 97.9 0.00025 5.4E-09 58.2 12.7 102 218-320 15-117 (168)
165 PRK10866 outer membrane biogen 97.9 0.011 2.5E-07 51.4 23.4 57 245-303 39-98 (243)
166 PRK02603 photosystem I assembl 97.9 0.00086 1.9E-08 55.2 15.6 86 169-256 38-124 (172)
167 PLN03088 SGT1, suppressor of 97.9 0.00042 9E-09 64.3 15.1 91 173-267 9-99 (356)
168 PF10037 MRP-S27: Mitochondria 97.9 0.00021 4.6E-09 66.3 12.7 119 237-355 65-184 (429)
169 PLN03088 SGT1, suppressor of 97.9 0.00044 9.5E-09 64.2 15.0 84 356-441 14-97 (356)
170 PF13432 TPR_16: Tetratricopep 97.9 6.5E-05 1.4E-09 50.2 7.0 62 455-517 3-64 (65)
171 TIGR00756 PPR pentatricopeptid 97.9 2.8E-05 6E-10 44.3 4.5 33 276-308 2-34 (35)
172 TIGR00756 PPR pentatricopeptid 97.9 2.9E-05 6.3E-10 44.2 4.4 33 416-448 2-34 (35)
173 KOG0553 TPR repeat-containing 97.9 0.00023 4.9E-09 61.1 11.3 102 352-457 89-190 (304)
174 PRK10153 DNA-binding transcrip 97.9 0.0013 2.9E-08 63.8 18.1 143 340-487 333-489 (517)
175 PF13812 PPR_3: Pentatricopept 97.9 3.3E-05 7.1E-10 43.7 4.4 32 416-447 3-34 (34)
176 KOG0553 TPR repeat-containing 97.9 0.00033 7.2E-09 60.2 12.0 102 317-422 89-190 (304)
177 KOG1130 Predicted G-alpha GTPa 97.9 0.00048 1E-08 61.6 13.3 132 311-442 197-343 (639)
178 PRK10153 DNA-binding transcrip 97.8 0.0011 2.5E-08 64.3 17.0 146 126-276 333-491 (517)
179 PF05843 Suf: Suppressor of fo 97.8 0.00074 1.6E-08 60.4 14.6 143 345-492 2-148 (280)
180 PF13812 PPR_3: Pentatricopept 97.8 4.3E-05 9.3E-10 43.2 4.5 32 276-307 3-34 (34)
181 KOG2796 Uncharacterized conser 97.8 0.015 3.2E-07 49.2 22.5 132 204-337 179-314 (366)
182 COG4235 Cytochrome c biogenesi 97.8 0.0015 3.2E-08 56.6 15.3 116 360-479 138-257 (287)
183 PF05843 Suf: Suppressor of fo 97.8 0.00061 1.3E-08 60.9 13.6 129 204-337 3-135 (280)
184 PF10037 MRP-S27: Mitochondria 97.8 0.0004 8.7E-09 64.5 12.5 123 270-392 62-186 (429)
185 PF13414 TPR_11: TPR repeat; P 97.8 0.00013 2.9E-09 49.4 7.2 67 448-515 2-69 (69)
186 KOG2280 Vacuolar assembly/sort 97.8 0.046 9.9E-07 53.4 27.9 344 123-506 425-792 (829)
187 COG4235 Cytochrome c biogenesi 97.8 0.0018 3.8E-08 56.2 14.8 109 225-338 145-256 (287)
188 PF13432 TPR_16: Tetratricopep 97.7 0.00016 3.4E-09 48.3 6.7 57 209-267 4-60 (65)
189 PRK10803 tol-pal system protei 97.7 0.00079 1.7E-08 59.0 12.1 89 426-516 155-249 (263)
190 PF13414 TPR_11: TPR repeat; P 97.7 0.0003 6.4E-09 47.7 7.3 62 203-266 4-66 (69)
191 PF13525 YfiO: Outer membrane 97.6 0.019 4.1E-07 48.7 19.6 57 246-302 13-70 (203)
192 PF13525 YfiO: Outer membrane 97.6 0.016 3.4E-07 49.2 18.5 65 100-164 10-76 (203)
193 PF08579 RPM2: Mitochondrial r 97.6 0.0016 3.4E-08 47.2 10.0 74 387-460 33-115 (120)
194 PF14559 TPR_19: Tetratricopep 97.6 0.00041 8.9E-09 46.8 6.9 52 214-267 3-54 (68)
195 KOG2796 Uncharacterized conser 97.6 0.04 8.6E-07 46.7 19.7 132 276-408 179-315 (366)
196 PF12688 TPR_5: Tetratrico pep 97.5 0.009 2E-07 45.1 14.4 90 175-265 10-102 (120)
197 PF14559 TPR_19: Tetratricopep 97.5 0.00011 2.4E-09 49.7 3.7 59 426-488 3-62 (68)
198 PF12688 TPR_5: Tetratrico pep 97.5 0.008 1.7E-07 45.4 13.8 16 357-372 14-29 (120)
199 PF08579 RPM2: Mitochondrial r 97.5 0.0021 4.5E-08 46.6 9.9 67 323-389 39-114 (120)
200 PF01535 PPR: PPR repeat; Int 97.5 0.00019 4.1E-09 39.4 3.7 28 416-443 2-29 (31)
201 PF01535 PPR: PPR repeat; Int 97.5 0.00018 3.9E-09 39.5 3.6 29 276-304 2-30 (31)
202 PF13371 TPR_9: Tetratricopept 97.4 0.00049 1.1E-08 47.2 6.1 58 458-516 4-61 (73)
203 PF13371 TPR_9: Tetratricopept 97.4 0.00079 1.7E-08 46.1 6.8 56 210-267 3-58 (73)
204 KOG1585 Protein required for f 97.4 0.038 8.2E-07 46.3 17.0 141 209-367 98-250 (308)
205 PF07079 DUF1347: Protein of u 97.4 0.12 2.6E-06 47.7 41.7 430 69-512 16-523 (549)
206 COG3898 Uncharacterized membra 97.3 0.11 2.3E-06 46.9 32.3 309 74-408 68-392 (531)
207 KOG2280 Vacuolar assembly/sort 97.3 0.2 4.3E-06 49.2 26.3 90 63-155 441-532 (829)
208 KOG1538 Uncharacterized conser 97.3 0.1 2.2E-06 50.2 20.5 21 388-408 826-846 (1081)
209 PF06239 ECSIT: Evolutionarily 97.3 0.013 2.8E-07 48.4 13.0 87 377-463 45-152 (228)
210 COG1729 Uncharacterized protei 97.2 0.01 2.2E-07 50.9 12.5 101 416-517 144-248 (262)
211 COG3118 Thioredoxin domain-con 97.2 0.09 1.9E-06 45.7 17.9 145 103-252 142-286 (304)
212 PRK10803 tol-pal system protei 97.2 0.021 4.5E-07 50.2 14.6 95 347-441 146-244 (263)
213 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.19 4.2E-06 46.3 36.4 67 58-126 41-107 (660)
214 PF06239 ECSIT: Evolutionarily 97.2 0.013 2.8E-07 48.4 12.2 36 394-429 118-153 (228)
215 PF03704 BTAD: Bacterial trans 97.2 0.02 4.4E-07 45.6 13.5 71 416-488 64-140 (146)
216 PRK15331 chaperone protein Sic 97.1 0.055 1.2E-06 42.8 15.0 90 386-477 44-133 (165)
217 PF13281 DUF4071: Domain of un 97.1 0.16 3.5E-06 46.6 20.1 167 310-478 142-334 (374)
218 PRK15331 chaperone protein Sic 97.1 0.031 6.7E-07 44.2 13.2 90 209-302 44-133 (165)
219 PF04840 Vps16_C: Vps16, C-ter 97.1 0.21 4.7E-06 45.3 30.1 79 316-404 184-262 (319)
220 PF13424 TPR_12: Tetratricopep 97.1 0.0025 5.4E-08 44.3 6.5 62 204-265 7-73 (78)
221 KOG1258 mRNA processing protei 97.0 0.36 7.9E-06 46.4 31.5 410 57-498 43-489 (577)
222 PF03704 BTAD: Bacterial trans 97.0 0.041 8.8E-07 43.8 13.8 71 381-452 64-139 (146)
223 PF04053 Coatomer_WDAD: Coatom 96.9 0.037 7.9E-07 52.7 14.9 131 168-334 297-427 (443)
224 COG3118 Thioredoxin domain-con 96.9 0.19 4.2E-06 43.8 17.5 146 137-288 141-286 (304)
225 PF13424 TPR_12: Tetratricopep 96.9 0.0038 8.2E-08 43.4 6.4 63 450-512 6-74 (78)
226 KOG2114 Vacuolar assembly/sort 96.9 0.46 9.9E-06 47.5 21.9 179 61-264 336-516 (933)
227 PF12921 ATP13: Mitochondrial 96.9 0.022 4.7E-07 43.5 10.3 51 235-285 49-99 (126)
228 KOG1941 Acetylcholine receptor 96.8 0.078 1.7E-06 47.2 14.7 228 248-476 16-273 (518)
229 KOG1941 Acetylcholine receptor 96.8 0.35 7.5E-06 43.3 20.5 203 204-406 45-273 (518)
230 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.052 1.1E-06 50.5 14.1 67 201-267 74-141 (453)
231 PF04840 Vps16_C: Vps16, C-ter 96.8 0.39 8.5E-06 43.7 32.2 107 276-402 179-285 (319)
232 PF12921 ATP13: Mitochondrial 96.7 0.058 1.3E-06 41.2 12.0 102 94-216 1-102 (126)
233 PF13512 TPR_18: Tetratricopep 96.7 0.066 1.4E-06 41.3 11.8 57 386-442 17-75 (142)
234 PF13281 DUF4071: Domain of un 96.7 0.53 1.2E-05 43.3 20.9 177 239-443 142-334 (374)
235 PF10300 DUF3808: Protein of u 96.6 0.14 3.1E-06 49.6 16.5 164 204-372 190-375 (468)
236 KOG1538 Uncharacterized conser 96.6 0.29 6.3E-06 47.3 17.5 54 238-301 747-800 (1081)
237 PF08631 SPO22: Meiosis protei 96.6 0.54 1.2E-05 42.2 25.9 52 70-122 4-63 (278)
238 KOG0543 FKBP-type peptidyl-pro 96.5 0.099 2.1E-06 47.6 13.6 61 204-266 259-319 (397)
239 COG4785 NlpI Lipoprotein NlpI, 96.5 0.3 6.6E-06 40.4 15.0 53 284-337 75-127 (297)
240 COG1729 Uncharacterized protei 96.5 0.028 6.1E-07 48.3 9.6 94 140-233 151-246 (262)
241 KOG1585 Protein required for f 96.5 0.43 9.4E-06 40.3 16.6 53 243-296 195-249 (308)
242 KOG0543 FKBP-type peptidyl-pro 96.5 0.058 1.3E-06 49.0 11.8 92 210-303 216-320 (397)
243 KOG2610 Uncharacterized conser 96.4 0.4 8.7E-06 42.5 16.2 114 215-333 116-233 (491)
244 PF13512 TPR_18: Tetratricopep 96.4 0.22 4.7E-06 38.6 13.1 64 174-237 18-82 (142)
245 COG4105 ComL DNA uptake lipopr 96.4 0.52 1.1E-05 40.4 20.9 57 247-303 43-100 (254)
246 KOG4555 TPR repeat-containing 96.4 0.072 1.6E-06 39.9 9.9 92 387-479 51-145 (175)
247 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.076 1.7E-06 49.4 12.3 68 236-303 73-141 (453)
248 PF08631 SPO22: Meiosis protei 96.4 0.72 1.5E-05 41.4 25.9 62 276-338 86-150 (278)
249 PF04184 ST7: ST7 protein; In 96.3 0.53 1.2E-05 44.3 17.3 99 418-516 263-378 (539)
250 PF04053 Coatomer_WDAD: Coatom 96.3 0.34 7.4E-06 46.3 16.7 157 70-264 272-428 (443)
251 PF10300 DUF3808: Protein of u 96.3 0.24 5.2E-06 48.0 16.1 61 204-266 307-375 (468)
252 PRK11906 transcriptional regul 96.3 0.43 9.4E-06 44.7 16.7 146 324-474 273-432 (458)
253 COG4105 ComL DNA uptake lipopr 96.3 0.61 1.3E-05 40.0 22.8 69 97-166 37-107 (254)
254 KOG1258 mRNA processing protei 96.3 1.2 2.6E-05 43.0 36.9 369 66-464 86-490 (577)
255 COG5107 RNA14 Pre-mRNA 3'-end 96.2 1 2.2E-05 41.8 31.7 418 79-515 29-533 (660)
256 PF13428 TPR_14: Tetratricopep 96.2 0.0073 1.6E-07 36.2 3.3 28 451-478 3-30 (44)
257 PF04184 ST7: ST7 protein; In 96.1 0.85 1.8E-05 43.0 17.6 57 172-228 265-321 (539)
258 PF13428 TPR_14: Tetratricopep 96.0 0.021 4.6E-07 34.2 4.7 38 204-243 3-40 (44)
259 KOG2610 Uncharacterized conser 95.9 1.1 2.5E-05 39.8 17.0 152 107-263 115-272 (491)
260 COG4649 Uncharacterized protei 95.8 0.75 1.6E-05 36.7 15.1 54 212-266 142-195 (221)
261 KOG4555 TPR repeat-containing 95.7 0.2 4.4E-06 37.6 9.6 90 353-444 52-145 (175)
262 COG0457 NrfG FOG: TPR repeat [ 95.7 1.2 2.7E-05 38.4 30.0 225 251-478 36-265 (291)
263 smart00299 CLH Clathrin heavy 95.6 0.83 1.8E-05 35.9 15.7 128 60-213 8-136 (140)
264 PRK11906 transcriptional regul 95.6 1.3 2.7E-05 41.8 16.4 119 145-267 273-401 (458)
265 COG1747 Uncharacterized N-term 95.5 2.2 4.9E-05 40.4 19.7 181 61-249 68-250 (711)
266 COG4649 Uncharacterized protei 95.5 1 2.2E-05 36.0 15.4 124 213-337 69-195 (221)
267 COG0457 NrfG FOG: TPR repeat [ 95.4 1.5 3.3E-05 37.8 32.2 227 215-443 36-265 (291)
268 PF07079 DUF1347: Protein of u 95.3 2.5 5.5E-05 39.4 30.7 142 141-285 17-178 (549)
269 PF09613 HrpB1_HrpK: Bacterial 95.2 1.2 2.5E-05 35.4 12.9 54 212-267 20-73 (160)
270 KOG4234 TPR repeat-containing 95.1 0.27 5.9E-06 40.1 9.3 95 386-484 102-201 (271)
271 smart00299 CLH Clathrin heavy 95.1 1.3 2.8E-05 34.9 14.6 126 98-249 10-136 (140)
272 KOG2066 Vacuolar assembly/sort 95.0 4.3 9.3E-05 40.7 29.8 106 136-250 362-467 (846)
273 KOG1464 COP9 signalosome, subu 95.0 2.1 4.6E-05 36.8 18.5 91 205-295 148-252 (440)
274 PF07719 TPR_2: Tetratricopept 94.9 0.081 1.7E-06 29.3 4.5 32 485-516 2-33 (34)
275 PF09205 DUF1955: Domain of un 94.9 1.2 2.7E-05 33.7 17.0 61 453-514 90-150 (161)
276 PF13174 TPR_6: Tetratricopept 94.9 0.068 1.5E-06 29.4 4.0 31 487-517 3-33 (33)
277 KOG1550 Extracellular protein 94.8 5.1 0.00011 40.1 23.9 273 218-515 228-540 (552)
278 PF13176 TPR_7: Tetratricopept 94.7 0.055 1.2E-06 30.7 3.3 23 487-509 2-24 (36)
279 PF00515 TPR_1: Tetratricopept 94.6 0.086 1.9E-06 29.3 4.0 32 485-516 2-33 (34)
280 PF09205 DUF1955: Domain of un 94.4 1.7 3.6E-05 33.0 15.6 63 416-479 88-150 (161)
281 COG3629 DnrI DNA-binding trans 94.4 0.61 1.3E-05 41.0 10.5 74 379-453 153-231 (280)
282 COG2909 MalT ATP-dependent tra 94.3 7.3 0.00016 39.9 27.0 230 139-369 424-684 (894)
283 KOG3941 Intermediate in Toll s 94.1 0.51 1.1E-05 40.8 9.1 48 378-425 66-118 (406)
284 COG2976 Uncharacterized protei 94.1 2.8 6E-05 34.4 13.6 57 456-514 133-189 (207)
285 PF10602 RPN7: 26S proteasome 94.0 0.92 2E-05 37.3 10.4 61 381-441 38-100 (177)
286 PF13170 DUF4003: Protein of u 93.9 4.7 0.0001 36.3 20.6 127 327-455 80-223 (297)
287 KOG0890 Protein kinase of the 93.9 15 0.00034 42.2 27.4 325 171-516 1388-1734(2382)
288 COG3629 DnrI DNA-binding trans 93.8 0.94 2E-05 39.9 10.5 79 344-423 153-236 (280)
289 PF13176 TPR_7: Tetratricopept 93.8 0.16 3.5E-06 28.7 4.1 24 241-264 2-25 (36)
290 KOG0276 Vesicle coat complex C 93.7 0.83 1.8E-05 44.0 10.6 99 213-334 648-746 (794)
291 PF10602 RPN7: 26S proteasome 93.7 1.7 3.7E-05 35.7 11.4 98 96-193 37-140 (177)
292 KOG1550 Extracellular protein 93.4 9.3 0.0002 38.3 25.5 275 182-478 228-538 (552)
293 PF13929 mRNA_stabil: mRNA sta 93.4 5.2 0.00011 35.3 16.5 118 144-262 142-262 (292)
294 KOG0276 Vesicle coat complex C 93.4 2.1 4.5E-05 41.5 12.6 149 108-300 599-747 (794)
295 KOG3941 Intermediate in Toll s 93.4 0.91 2E-05 39.3 9.3 87 307-393 65-172 (406)
296 PF13431 TPR_17: Tetratricopep 93.3 0.15 3.4E-06 28.3 3.3 21 237-257 12-32 (34)
297 COG2976 Uncharacterized protei 93.0 4.5 9.7E-05 33.3 14.1 91 172-268 95-189 (207)
298 PF09613 HrpB1_HrpK: Bacterial 92.9 4 8.7E-05 32.5 13.4 15 356-370 56-70 (160)
299 KOG2114 Vacuolar assembly/sort 92.8 13 0.00027 38.0 28.5 176 98-300 337-516 (933)
300 PF13431 TPR_17: Tetratricopep 92.7 0.14 3.1E-06 28.5 2.6 22 483-504 12-33 (34)
301 TIGR02561 HrpB1_HrpK type III 92.5 4.1 9E-05 31.8 12.0 52 214-267 22-73 (153)
302 COG4785 NlpI Lipoprotein NlpI, 92.5 5.6 0.00012 33.3 21.5 181 214-408 77-266 (297)
303 PF08424 NRDE-2: NRDE-2, neces 92.3 8.8 0.00019 35.3 15.2 98 92-192 16-128 (321)
304 KOG3364 Membrane protein invol 92.2 2.1 4.6E-05 32.6 8.9 24 455-478 77-100 (149)
305 PF10345 Cohesin_load: Cohesin 91.9 16 0.00035 37.2 31.3 191 286-477 373-605 (608)
306 KOG4648 Uncharacterized conser 91.8 0.51 1.1E-05 41.9 6.1 97 384-484 102-198 (536)
307 PRK09687 putative lyase; Provi 91.8 9.4 0.0002 34.2 25.7 233 236-494 35-277 (280)
308 PF13181 TPR_8: Tetratricopept 91.7 0.42 9.1E-06 26.4 3.9 30 486-515 3-32 (34)
309 PF07035 Mic1: Colon cancer-as 91.5 6.3 0.00014 31.8 15.1 99 80-192 15-115 (167)
310 KOG4234 TPR repeat-containing 91.3 3.1 6.6E-05 34.3 9.4 87 248-337 105-196 (271)
311 PF10345 Cohesin_load: Cohesin 90.9 20 0.00044 36.5 39.5 433 78-512 40-605 (608)
312 PF00637 Clathrin: Region in C 90.9 0.013 2.8E-07 46.5 -4.2 84 65-156 13-96 (143)
313 PRK09687 putative lyase; Provi 90.7 12 0.00026 33.5 28.2 233 200-459 35-277 (280)
314 COG1747 Uncharacterized N-term 90.4 17 0.00038 34.8 25.8 167 270-443 62-234 (711)
315 PF07719 TPR_2: Tetratricopept 90.3 0.82 1.8E-05 25.1 4.2 28 451-478 3-30 (34)
316 KOG0890 Protein kinase of the 90.3 42 0.0009 39.0 27.6 321 135-477 1388-1730(2382)
317 PF02259 FAT: FAT domain; Int 90.2 16 0.00035 34.1 25.2 64 344-407 146-212 (352)
318 PF13374 TPR_10: Tetratricopep 90.0 0.79 1.7E-05 26.6 4.2 28 485-512 3-30 (42)
319 PF00515 TPR_1: Tetratricopept 89.9 0.92 2E-05 25.0 4.2 27 240-266 3-29 (34)
320 PF06552 TOM20_plant: Plant sp 89.7 8.1 0.00018 31.4 10.5 96 218-319 7-123 (186)
321 KOG1920 IkappaB kinase complex 89.6 32 0.0007 36.8 23.4 138 311-474 910-1051(1265)
322 COG4455 ImpE Protein of avirul 89.6 5.7 0.00012 33.3 9.7 77 98-175 4-81 (273)
323 PF02259 FAT: FAT domain; Int 89.4 18 0.0004 33.7 24.3 66 272-337 144-212 (352)
324 COG2909 MalT ATP-dependent tra 89.3 29 0.00063 35.9 30.3 228 211-439 424-684 (894)
325 PF00637 Clathrin: Region in C 89.3 0.01 2.2E-07 47.1 -6.0 85 100-192 12-96 (143)
326 KOG2396 HAT (Half-A-TPR) repea 89.3 21 0.00045 34.2 39.0 414 75-512 87-558 (568)
327 KOG4648 Uncharacterized conser 89.0 3.2 6.9E-05 37.2 8.5 49 174-225 105-154 (536)
328 KOG1920 IkappaB kinase complex 88.9 36 0.00079 36.5 27.6 131 351-507 915-1049(1265)
329 TIGR03504 FimV_Cterm FimV C-te 88.9 0.46 9.9E-06 28.3 2.4 24 490-513 5-28 (44)
330 PF13374 TPR_10: Tetratricopep 88.7 1.3 2.7E-05 25.7 4.4 26 240-265 4-29 (42)
331 PF07035 Mic1: Colon cancer-as 88.7 11 0.00025 30.4 14.6 29 298-326 18-46 (167)
332 PRK11619 lytic murein transgly 88.4 32 0.00069 35.2 31.9 117 357-476 254-373 (644)
333 cd00923 Cyt_c_Oxidase_Va Cytoc 88.4 5.3 0.00011 28.5 7.6 44 433-476 26-69 (103)
334 PRK11619 lytic murein transgly 88.3 32 0.0007 35.1 40.4 315 70-406 44-373 (644)
335 KOG4570 Uncharacterized conser 88.3 12 0.00027 33.3 11.4 46 325-370 116-161 (418)
336 PF14853 Fis1_TPR_C: Fis1 C-te 88.3 0.78 1.7E-05 28.6 3.3 34 454-489 6-39 (53)
337 PF06552 TOM20_plant: Plant sp 88.3 3.4 7.3E-05 33.5 7.5 46 360-406 7-55 (186)
338 PF11207 DUF2989: Protein of u 88.1 5.6 0.00012 33.0 8.9 20 448-467 177-196 (203)
339 COG5159 RPN6 26S proteasome re 88.0 18 0.00039 31.8 12.6 23 206-228 129-151 (421)
340 cd00923 Cyt_c_Oxidase_Va Cytoc 87.8 2.5 5.5E-05 30.0 5.7 52 464-515 22-73 (103)
341 KOG1464 COP9 signalosome, subu 87.8 18 0.00038 31.5 17.0 123 144-266 41-173 (440)
342 KOG0128 RNA-binding protein SA 87.7 35 0.00077 34.9 34.7 397 93-505 111-555 (881)
343 PRK15180 Vi polysaccharide bio 87.7 26 0.00056 33.3 25.2 91 173-267 330-420 (831)
344 KOG4570 Uncharacterized conser 87.7 11 0.00024 33.6 10.7 103 127-232 61-165 (418)
345 PF11207 DUF2989: Protein of u 87.1 13 0.00027 31.0 10.4 21 308-328 177-197 (203)
346 PF07163 Pex26: Pex26 protein; 86.7 10 0.00022 33.2 9.9 88 136-225 89-181 (309)
347 PF02284 COX5A: Cytochrome c o 86.6 10 0.00022 27.5 8.2 75 417-493 11-88 (108)
348 PF04097 Nic96: Nup93/Nic96; 86.3 42 0.0009 34.3 25.5 87 245-337 265-355 (613)
349 KOG2066 Vacuolar assembly/sort 86.1 43 0.00092 34.2 27.0 149 173-336 363-532 (846)
350 PF07721 TPR_4: Tetratricopept 86.0 1.1 2.5E-05 22.9 2.6 21 488-508 5-25 (26)
351 smart00028 TPR Tetratricopepti 85.7 1.9 4.1E-05 22.6 3.9 30 486-515 3-32 (34)
352 KOG2300 Uncharacterized conser 85.3 36 0.00077 32.6 35.2 373 61-441 48-512 (629)
353 COG4455 ImpE Protein of avirul 85.3 7.8 0.00017 32.5 8.2 53 209-263 8-60 (273)
354 PF13181 TPR_8: Tetratricopept 85.2 2.8 6.1E-05 22.9 4.3 27 240-266 3-29 (34)
355 PRK15180 Vi polysaccharide bio 85.1 19 0.0004 34.3 11.5 126 173-304 296-421 (831)
356 KOG4507 Uncharacterized conser 85.1 2.4 5.2E-05 40.9 6.0 93 424-519 617-711 (886)
357 PRK10941 hypothetical protein; 84.8 19 0.00042 31.9 11.2 79 204-284 183-261 (269)
358 PF09986 DUF2225: Uncharacteri 84.2 16 0.00034 31.2 10.1 28 489-516 170-197 (214)
359 PF13174 TPR_6: Tetratricopept 83.7 2 4.3E-05 23.2 3.2 22 209-230 7-28 (33)
360 COG3947 Response regulator con 83.5 32 0.00068 30.6 15.9 43 75-120 149-191 (361)
361 KOG1586 Protein required for f 83.5 27 0.0006 29.8 17.2 88 180-268 128-225 (288)
362 KOG2471 TPR repeat-containing 83.0 26 0.00056 33.5 11.4 106 283-390 249-380 (696)
363 PF10579 Rapsyn_N: Rapsyn N-te 82.5 4.3 9.3E-05 27.7 4.8 46 178-223 18-64 (80)
364 PF13170 DUF4003: Protein of u 81.7 40 0.00088 30.5 21.5 132 290-423 78-226 (297)
365 PF10579 Rapsyn_N: Rapsyn N-te 81.4 6.1 0.00013 27.0 5.2 46 426-471 18-65 (80)
366 KOG4507 Uncharacterized conser 81.1 25 0.00055 34.4 10.9 88 213-303 618-705 (886)
367 TIGR03504 FimV_Cterm FimV C-te 80.6 5.8 0.00013 23.6 4.4 20 387-406 7-26 (44)
368 COG2256 MGS1 ATPase related to 80.4 52 0.0011 30.9 15.0 96 426-521 261-363 (436)
369 PF02284 COX5A: Cytochrome c o 79.8 21 0.00044 25.9 10.5 78 379-457 8-87 (108)
370 PF07163 Pex26: Pex26 protein; 79.8 35 0.00076 30.1 10.4 57 209-266 90-146 (309)
371 TIGR02561 HrpB1_HrpK type III 79.5 29 0.00062 27.4 14.2 50 142-193 22-71 (153)
372 PF04097 Nic96: Nup93/Nic96; 79.3 78 0.0017 32.3 17.2 42 208-251 117-158 (613)
373 PRK10941 hypothetical protein; 79.2 22 0.00047 31.6 9.5 75 100-175 186-260 (269)
374 COG0790 FOG: TPR repeat, SEL1 78.4 51 0.0011 29.7 22.4 47 254-304 93-143 (292)
375 KOG0292 Vesicle coat complex C 77.5 96 0.0021 32.4 20.3 56 429-484 1062-1119(1202)
376 COG0790 FOG: TPR repeat, SEL1 76.9 57 0.0012 29.4 23.5 151 286-445 53-222 (292)
377 PRK13800 putative oxidoreducta 76.8 1.2E+02 0.0025 32.9 27.6 253 236-518 633-886 (897)
378 KOG4642 Chaperone-dependent E3 76.5 49 0.0011 28.5 10.2 84 212-300 20-104 (284)
379 PF14561 TPR_20: Tetratricopep 76.2 25 0.00054 25.0 8.5 31 127-157 19-49 (90)
380 PF12862 Apc5: Anaphase-promot 75.7 18 0.00039 25.9 6.8 24 244-267 47-70 (94)
381 PF08424 NRDE-2: NRDE-2, neces 75.6 67 0.0014 29.6 17.4 26 420-445 160-185 (321)
382 PF13929 mRNA_stabil: mRNA sta 74.7 62 0.0014 28.8 18.8 61 271-331 199-260 (292)
383 PF11846 DUF3366: Domain of un 74.6 14 0.00031 30.9 7.0 33 198-230 140-172 (193)
384 COG3947 Response regulator con 74.5 63 0.0014 28.8 16.3 69 417-487 282-356 (361)
385 KOG0686 COP9 signalosome, subu 74.0 79 0.0017 29.7 14.7 66 238-303 150-216 (466)
386 PF12862 Apc5: Anaphase-promot 73.8 15 0.00033 26.3 6.0 23 135-157 46-68 (94)
387 KOG2471 TPR repeat-containing 73.5 90 0.002 30.1 14.3 40 142-182 29-68 (696)
388 PF14561 TPR_20: Tetratricopep 73.2 30 0.00066 24.6 8.6 29 203-231 23-51 (90)
389 PRK13341 recombination factor 73.0 1.3E+02 0.0027 31.6 18.3 183 324-521 169-371 (725)
390 KOG4077 Cytochrome c oxidase, 72.7 14 0.0003 27.9 5.4 60 432-492 67-126 (149)
391 COG5159 RPN6 26S proteasome re 72.6 69 0.0015 28.4 13.8 53 244-297 9-68 (421)
392 KOG1586 Protein required for f 72.4 62 0.0014 27.8 22.9 17 321-337 166-182 (288)
393 PF08311 Mad3_BUB1_I: Mad3/BUB 71.4 44 0.00095 25.6 10.0 45 220-264 81-125 (126)
394 PF09986 DUF2225: Uncharacteri 70.9 66 0.0014 27.5 11.4 48 431-478 142-194 (214)
395 PF11846 DUF3366: Domain of un 70.8 16 0.00034 30.6 6.4 29 128-156 142-170 (193)
396 PF07575 Nucleopor_Nup85: Nup8 69.5 1.3E+02 0.0029 30.4 20.0 26 131-156 149-174 (566)
397 KOG2063 Vacuolar assembly/sort 69.2 1.6E+02 0.0035 31.3 20.6 116 241-356 507-638 (877)
398 PF12002 MgsA_C: MgsA AAA+ ATP 69.1 56 0.0012 26.5 8.6 17 394-410 3-19 (168)
399 PF14689 SPOB_a: Sensor_kinase 68.2 12 0.00027 24.3 4.1 24 489-512 28-51 (62)
400 PRK13184 pknD serine/threonine 68.1 1.8E+02 0.0039 31.4 27.0 100 98-201 478-587 (932)
401 KOG4642 Chaperone-dependent E3 67.8 81 0.0018 27.3 11.3 84 176-264 20-104 (284)
402 COG0735 Fur Fe2+/Zn2+ uptake r 66.7 43 0.00093 26.5 7.6 58 87-145 13-70 (145)
403 PF07575 Nucleopor_Nup85: Nup8 66.6 45 0.00097 33.7 9.6 59 276-336 407-465 (566)
404 KOG1308 Hsp70-interacting prot 66.6 5.2 0.00011 36.0 2.6 93 249-344 125-217 (377)
405 PRK13342 recombination factor 66.6 1.3E+02 0.0027 29.0 20.3 21 428-448 244-264 (413)
406 PF14853 Fis1_TPR_C: Fis1 C-te 65.8 30 0.00066 21.6 5.7 29 420-450 7-35 (53)
407 TIGR02508 type_III_yscG type I 64.2 53 0.0011 23.8 7.9 79 394-479 20-98 (115)
408 KOG3807 Predicted membrane pro 63.6 70 0.0015 29.0 8.8 120 108-243 229-352 (556)
409 KOG2300 Uncharacterized conser 63.6 1.5E+02 0.0032 28.8 36.3 156 356-511 335-512 (629)
410 PF09670 Cas_Cas02710: CRISPR- 63.1 1.3E+02 0.0028 28.5 11.4 57 316-373 138-198 (379)
411 PF09477 Type_III_YscG: Bacter 62.7 59 0.0013 23.9 8.4 78 394-478 21-98 (116)
412 PRK12798 chemotaxis protein; R 62.6 1.4E+02 0.0031 28.3 21.4 192 286-482 124-328 (421)
413 PF09454 Vps23_core: Vps23 cor 62.4 25 0.00055 23.1 4.6 52 446-498 5-56 (65)
414 PF14689 SPOB_a: Sensor_kinase 61.8 36 0.00077 22.1 5.3 23 384-406 28-50 (62)
415 KOG4077 Cytochrome c oxidase, 61.6 70 0.0015 24.4 7.8 60 396-456 66-125 (149)
416 PF11817 Foie-gras_1: Foie gra 61.6 46 0.00099 29.3 7.7 62 204-265 180-245 (247)
417 TIGR02508 type_III_yscG type I 61.6 60 0.0013 23.6 8.2 50 248-304 49-98 (115)
418 KOG3677 RNA polymerase I-assoc 61.3 1.2E+02 0.0026 28.6 10.0 60 169-228 238-298 (525)
419 KOG3807 Predicted membrane pro 60.9 1.3E+02 0.0029 27.3 10.9 62 206-267 279-340 (556)
420 PRK10564 maltose regulon perip 60.5 21 0.00046 31.9 5.2 38 270-307 252-290 (303)
421 PF10255 Paf67: RNA polymerase 60.4 65 0.0014 30.6 8.6 99 413-511 74-191 (404)
422 KOG2396 HAT (Half-A-TPR) repea 60.3 1.7E+02 0.0037 28.5 35.2 399 57-477 103-558 (568)
423 PF09670 Cas_Cas02710: CRISPR- 60.0 1.6E+02 0.0034 28.0 12.2 56 352-408 139-198 (379)
424 KOG1498 26S proteasome regulat 59.5 1.6E+02 0.0034 27.7 16.4 50 72-121 25-78 (439)
425 KOG1308 Hsp70-interacting prot 59.3 18 0.00039 32.8 4.6 117 356-476 126-242 (377)
426 PF00244 14-3-3: 14-3-3 protei 59.1 1.2E+02 0.0027 26.4 10.3 59 314-372 6-65 (236)
427 PF04190 DUF410: Protein of un 58.7 1.3E+02 0.0029 26.6 18.7 28 235-262 87-114 (260)
428 COG5071 RPN5 26S proteasome re 58.3 1.4E+02 0.003 26.8 12.4 22 95-116 52-73 (439)
429 cd00280 TRFH Telomeric Repeat 57.1 94 0.002 25.6 7.8 47 395-441 85-138 (200)
430 PF04762 IKI3: IKI3 family; I 56.8 2.5E+02 0.0054 30.6 13.2 113 344-474 812-926 (928)
431 PRK14700 recombination factor 56.4 1.5E+02 0.0034 26.7 19.2 84 426-509 138-226 (300)
432 PF10366 Vps39_1: Vacuolar sor 56.2 49 0.0011 24.5 5.9 26 132-157 41-66 (108)
433 KOG1498 26S proteasome regulat 56.1 1.8E+02 0.0039 27.3 15.9 23 206-228 135-157 (439)
434 PRK11639 zinc uptake transcrip 54.8 86 0.0019 25.6 7.7 60 86-146 17-76 (169)
435 KOG2908 26S proteasome regulat 54.5 1.8E+02 0.0038 26.8 10.7 91 345-435 76-178 (380)
436 KOG1114 Tripeptidyl peptidase 54.4 3E+02 0.0065 29.4 14.7 51 273-323 1230-1281(1304)
437 PF11848 DUF3368: Domain of un 54.2 48 0.001 20.2 5.2 32 460-491 13-44 (48)
438 KOG0687 26S proteasome regulat 54.0 1.8E+02 0.0038 26.6 14.3 97 274-372 104-209 (393)
439 PF11817 Foie-gras_1: Foie gra 53.9 1E+02 0.0023 27.0 8.6 63 239-301 179-245 (247)
440 KOG2062 26S proteasome regulat 53.7 2.7E+02 0.0059 28.7 29.8 154 67-231 67-239 (929)
441 KOG0545 Aryl-hydrocarbon recep 53.5 1.5E+02 0.0033 25.8 10.5 102 414-516 178-296 (329)
442 PF09477 Type_III_YscG: Bacter 53.1 91 0.002 23.0 9.6 12 181-192 21-32 (116)
443 COG4941 Predicted RNA polymera 52.3 1.9E+02 0.0042 26.5 11.1 117 359-478 271-394 (415)
444 PRK13800 putative oxidoreducta 52.2 3.5E+02 0.0075 29.5 27.9 261 199-493 632-893 (897)
445 smart00386 HAT HAT (Half-A-TPR 51.9 34 0.00074 17.8 3.8 15 217-231 2-16 (33)
446 KOG0376 Serine-threonine phosp 51.8 37 0.0008 32.5 5.5 107 170-284 8-115 (476)
447 KOG0376 Serine-threonine phosp 51.7 39 0.00085 32.3 5.7 104 316-424 11-115 (476)
448 COG4976 Predicted methyltransf 51.6 31 0.00068 29.4 4.5 53 425-479 6-59 (287)
449 cd08819 CARD_MDA5_2 Caspase ac 51.3 84 0.0018 22.2 6.7 38 250-293 48-85 (88)
450 KOG0551 Hsp90 co-chaperone CNS 50.4 1.7E+02 0.0036 26.9 8.9 96 379-476 81-180 (390)
451 PF03745 DUF309: Domain of unk 48.9 73 0.0016 20.7 6.0 47 390-436 10-61 (62)
452 COG5187 RPN7 26S proteasome re 48.8 2E+02 0.0043 25.8 14.1 109 262-372 103-220 (412)
453 PRK09462 fur ferric uptake reg 48.5 1.1E+02 0.0025 24.1 7.3 59 87-146 9-68 (148)
454 KOG0551 Hsp90 co-chaperone CNS 48.0 2.2E+02 0.0049 26.1 9.5 90 244-334 87-178 (390)
455 PF13762 MNE1: Mitochondrial s 48.0 1.4E+02 0.003 23.6 8.6 48 309-356 79-127 (145)
456 KOG4814 Uncharacterized conser 47.0 1.8E+02 0.0039 29.3 9.3 87 176-266 364-456 (872)
457 KOG4521 Nuclear pore complex, 46.8 4.4E+02 0.0094 29.1 14.1 158 65-225 926-1125(1480)
458 KOG2034 Vacuolar sorting prote 46.4 3.8E+02 0.0083 28.3 29.7 52 171-229 363-416 (911)
459 PF11848 DUF3368: Domain of un 46.4 66 0.0014 19.5 5.0 31 426-456 14-44 (48)
460 COG5187 RPN7 26S proteasome re 46.2 2.2E+02 0.0048 25.5 13.5 105 162-266 111-220 (412)
461 PF10366 Vps39_1: Vacuolar sor 45.8 1.2E+02 0.0027 22.4 7.4 27 311-337 41-67 (108)
462 PF10475 DUF2450: Protein of u 45.0 2E+02 0.0043 26.1 9.2 52 208-266 104-155 (291)
463 PF12793 SgrR_N: Sugar transpo 45.0 1.2E+02 0.0025 22.9 6.4 42 261-304 6-47 (115)
464 KOG0292 Vesicle coat complex C 44.3 1.7E+02 0.0036 30.8 8.9 93 425-517 1002-1117(1202)
465 cd07153 Fur_like Ferric uptake 44.3 70 0.0015 23.9 5.4 45 101-145 6-50 (116)
466 PRK10564 maltose regulon perip 44.1 50 0.0011 29.6 4.9 29 383-411 261-289 (303)
467 KOG0686 COP9 signalosome, subu 43.8 2.9E+02 0.0063 26.2 16.0 64 203-266 151-215 (466)
468 PF04762 IKI3: IKI3 family; I 42.4 4.9E+02 0.011 28.4 17.6 28 276-303 814-843 (928)
469 KOG2297 Predicted translation 42.3 2.6E+02 0.0057 25.3 14.1 18 311-328 323-340 (412)
470 smart00777 Mad3_BUB1_I Mad3/BU 42.2 1.6E+02 0.0034 22.6 9.2 44 219-262 80-123 (125)
471 KOG3364 Membrane protein invol 42.1 1.7E+02 0.0036 22.9 10.5 66 377-442 30-99 (149)
472 PF01475 FUR: Ferric uptake re 41.7 66 0.0014 24.3 4.9 47 99-145 11-57 (120)
473 COG0735 Fur Fe2+/Zn2+ uptake r 41.0 1.6E+02 0.0035 23.3 7.0 62 402-464 9-70 (145)
474 PF15297 CKAP2_C: Cytoskeleton 41.0 2.7E+02 0.006 25.7 9.0 64 395-460 119-186 (353)
475 PF14929 TAF1_subA: TAF RNA Po 40.8 3.9E+02 0.0085 26.9 13.5 50 236-285 409-466 (547)
476 smart00777 Mad3_BUB1_I Mad3/BU 40.7 1.7E+02 0.0036 22.5 9.3 41 468-508 82-123 (125)
477 PF11123 DNA_Packaging_2: DNA 40.3 1.1E+02 0.0024 20.6 4.8 12 236-247 29-40 (82)
478 PF06957 COPI_C: Coatomer (COP 39.9 1.4E+02 0.003 28.7 7.4 136 354-521 214-357 (422)
479 PF10516 SHNi-TPR: SHNi-TPR; 39.1 77 0.0017 18.2 3.7 27 486-512 3-29 (38)
480 KOG4567 GTPase-activating prot 38.8 2.2E+02 0.0049 25.8 7.9 41 296-336 265-305 (370)
481 PF11663 Toxin_YhaV: Toxin wit 38.7 37 0.00081 26.1 2.9 21 288-308 109-129 (140)
482 PF09454 Vps23_core: Vps23 cor 38.6 43 0.00092 22.1 2.8 50 93-143 6-55 (65)
483 PF13762 MNE1: Mitochondrial s 38.4 2E+02 0.0043 22.8 11.0 80 347-426 42-127 (145)
484 COG4976 Predicted methyltransf 38.4 81 0.0018 27.1 5.0 50 215-266 8-57 (287)
485 KOG0128 RNA-binding protein SA 38.3 5E+02 0.011 27.3 33.5 367 128-514 111-527 (881)
486 PF11663 Toxin_YhaV: Toxin wit 38.1 38 0.00083 26.1 2.9 28 462-491 108-135 (140)
487 PF14669 Asp_Glu_race_2: Putat 38.0 2.4E+02 0.0052 23.6 12.7 27 278-304 136-162 (233)
488 PF10475 DUF2450: Protein of u 37.3 3.2E+02 0.0069 24.8 11.9 23 412-434 195-217 (291)
489 KOG2659 LisH motif-containing 37.2 2.7E+02 0.0059 24.0 11.6 99 340-440 22-129 (228)
490 PF13646 HEAT_2: HEAT repeats; 37.1 1.4E+02 0.003 20.6 6.9 60 413-477 13-72 (88)
491 KOG3677 RNA polymerase I-assoc 36.7 3.8E+02 0.0083 25.5 9.8 18 353-370 281-298 (525)
492 PHA02537 M terminase endonucle 36.6 2.8E+02 0.0062 24.0 9.8 132 366-516 70-210 (230)
493 PF13934 ELYS: Nuclear pore co 36.3 2.9E+02 0.0062 23.9 16.2 96 355-461 89-184 (226)
494 PF04124 Dor1: Dor1-like famil 36.2 1.7E+02 0.0038 27.2 7.6 34 135-168 111-144 (338)
495 PRK06645 DNA polymerase III su 35.9 4.4E+02 0.0095 26.3 10.5 103 74-200 188-290 (507)
496 cd08819 CARD_MDA5_2 Caspase ac 35.6 1.6E+02 0.0035 20.8 7.4 13 393-405 50-62 (88)
497 PF00244 14-3-3: 14-3-3 protei 35.4 3E+02 0.0066 24.0 11.3 57 244-301 7-64 (236)
498 KOG1839 Uncharacterized protei 35.2 6.5E+02 0.014 28.2 11.9 131 306-436 970-1121(1236)
499 PF02847 MA3: MA3 domain; Int 35.1 1.8E+02 0.004 21.4 7.8 21 385-405 8-28 (113)
500 KOG1839 Uncharacterized protei 34.6 7E+02 0.015 27.9 12.2 157 316-472 939-1122(1236)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.6e-63 Score=501.79 Aligned_cols=452 Identities=19% Similarity=0.285 Sum_probs=276.5
Q ss_pred CCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHH
Q 009977 57 SRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNL 136 (521)
Q Consensus 57 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (521)
|+..+|+.++.+|++.|++++|+++|+.| ...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M-~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLV-QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 55556666666666666666666666665 34456666666666666666666666666666666666666666666666
Q ss_pred HHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhc-CCCCCcHHHHHHHHHHHHhc
Q 009977 137 MKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQH-LRLKPNTCIFNILIKHHCKR 215 (521)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 215 (521)
|.+|++.|++++|+++|++|.. .+..||..+|+.++.+|++.|++++|.++|+.|... .++.||..+|+.++.+|++.
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~-~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRS-KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence 6666666666666666666644 345566666666666666666666666666666431 34556666666666666666
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 009977 216 GTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKK 295 (521)
Q Consensus 216 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 295 (521)
|++++|.++|++|.+.+.. |+..+|+.++.+|++.|++++|+++|++|... |+.||..+|+.++.+|++.|++++|.+
T Consensus 593 G~ldeA~elf~~M~e~gi~-p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIK-GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 6666666666666666654 56666666666666666666666666666554 456666666666666666666666666
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009977 296 IMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGC 375 (521)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 375 (521)
+++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|+++|++|.+.|+
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 66666666666666666666666666666666666666666656666666666666666666666666666666666666
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc----C-------------------CCHHH
Q 009977 376 KADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ----K-------------------GELEK 432 (521)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~ 432 (521)
.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++..|.+ + +..++
T Consensus 751 ~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~ 830 (1060)
T PLN03218 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSW 830 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHH
Confidence 666666666666666666666666666666666666666666666544321 0 11245
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 009977 433 AIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 433 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 512 (521)
|+.+|++|++.|+.||..+|+.++.++...+..+.+..+++.|...+..|+..+|+.+++++.+. .++|..++++|.+
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 66666666666666666666666655555555666666665555555555566666666655221 2456666666666
Q ss_pred cC
Q 009977 513 KE 514 (521)
Q Consensus 513 ~~ 514 (521)
.+
T Consensus 909 ~G 910 (1060)
T PLN03218 909 LG 910 (1060)
T ss_pred cC
Confidence 54
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.1e-62 Score=495.05 Aligned_cols=453 Identities=19% Similarity=0.275 Sum_probs=427.5
Q ss_pred CCCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHH
Q 009977 56 RSRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLN 135 (521)
Q Consensus 56 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (521)
.++...+..++..+.+.|++++|+++|++|....-++++..+++.++..|.+.|.+++|..+++.|.. |+..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 35677888999999999999999999999965543577888899999999999999999999999974 88999999
Q ss_pred HHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhc
Q 009977 136 LMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKR 215 (521)
Q Consensus 136 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (521)
++.+|++.|++++|.++|+.|.. .+..|+..+|+.++.+|++.|++++|.++|+.|.+. |+.||..+|+.+|.+|++.
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~-~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQE-AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999986 677999999999999999999999999999999765 8999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 009977 216 GTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK-DQILPDALTYNVLIDGFCRGGKVDRAK 294 (521)
Q Consensus 216 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 294 (521)
|++++|.++|++|...|.. ||..+|+.++.+|++.|++++|.++|++|... .++.||..+|+.++.+|++.|++++|.
T Consensus 521 G~~eeAl~lf~~M~~~Gv~-PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVK-PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999986 99999999999999999999999999999763 468999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009977 295 KIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERG 374 (521)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 374 (521)
++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009977 375 CKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNE 454 (521)
Q Consensus 375 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 454 (521)
+.|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----c-------------------CcHHHHHHHHHHHH
Q 009977 455 LLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICR----G-------------------RKLLFAFELLDELV 511 (521)
Q Consensus 455 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~ 511 (521)
++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ . +..++|..+|++|+
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876432 1 23467999999999
Q ss_pred HcCc
Q 009977 512 IKES 515 (521)
Q Consensus 512 ~~~~ 515 (521)
+.+-
T Consensus 840 ~~Gi 843 (1060)
T PLN03218 840 SAGT 843 (1060)
T ss_pred HCCC
Confidence 9863
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.5e-61 Score=484.65 Aligned_cols=437 Identities=20% Similarity=0.281 Sum_probs=392.2
Q ss_pred CCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHH
Q 009977 57 SRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNL 136 (521)
Q Consensus 57 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (521)
.+.++|+.++..+.+.|++++|+++|++|....++.||..+|+.++.+|.+.++++.+.+++..|.+.|+.|+..+++.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 45679999999999999999999999999766668899999999999999999999999999999999999999999999
Q ss_pred HHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC-----------------
Q 009977 137 MKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLK----------------- 199 (521)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------------- 199 (521)
+.+|++.|++++|.++|++|. .|+..+|+.++.+|++.|++++|.++|++|.+. +..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCC
Confidence 999999999999999999996 589999999999999999999999999999653 444
Q ss_pred ------------------CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 009977 200 ------------------PNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELF 261 (521)
Q Consensus 200 ------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 261 (521)
||..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|+++|
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 4555667888888899999999999988864 68889999999999999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 009977 262 EEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK 341 (521)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 341 (521)
++|.+. |+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..+++.|+.+|++.|++++|.++|++|.+
T Consensus 314 ~~M~~~-g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---- 388 (697)
T PLN03081 314 YEMRDS-GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---- 388 (697)
T ss_pred HHHHHc-CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----
Confidence 999765 688999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCccCHHHHHHH
Q 009977 342 PDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWY-DGIYLNKASYRIV 420 (521)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l 420 (521)
||..+||.|+.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.+
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 688899999999999999999999999999999999999999999999999999999999999976 5888999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCc
Q 009977 421 LNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKP-ESDSWALLVELICRGRK 499 (521)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 499 (521)
+.+|++.|++++|.+++++| ++.|+..+|+.|+.+|...|+++.|..+++++.+. .| +..+|..++..|.+.|+
T Consensus 469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCC
Confidence 99999999999999988776 57889999999999999999999999998888755 34 45789999999999999
Q ss_pred HHHHHHHHHHHHHcC
Q 009977 500 LLFAFELLDELVIKE 514 (521)
Q Consensus 500 ~~~A~~~~~~m~~~~ 514 (521)
+++|.+++++|.+++
T Consensus 544 ~~~A~~v~~~m~~~g 558 (697)
T PLN03081 544 QAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999999876
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-59 Score=486.14 Aligned_cols=448 Identities=16% Similarity=0.226 Sum_probs=320.3
Q ss_pred cccccCCCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCH
Q 009977 51 VDARKRSRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHE 130 (521)
Q Consensus 51 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 130 (521)
++....+++++|+.+|.+|.+.|++++|+++|++|. ..|+.||..+|+.++.+|...+++..+.+++..+.+.|+.++.
T Consensus 144 f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~-~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (857)
T PLN03077 144 FGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV 222 (857)
T ss_pred HhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCccc
Confidence 445566899999999999999999999999999994 5589999998888888887777777777777777777777777
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHH
Q 009977 131 GIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIK 210 (521)
Q Consensus 131 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 210 (521)
.+++.++.+|++.|++++|.++|++|. .++..+|+.++.+|++.|++++|.++|++|.+. |+.||..+|+.++.
T Consensus 223 ~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~ 296 (857)
T PLN03077 223 DVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVIS 296 (857)
T ss_pred chHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHH
Confidence 777777777777777777777777775 456667777777777777777777777777543 66666666666666
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCH
Q 009977 211 HHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKV 290 (521)
Q Consensus 211 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 290 (521)
+|.+.|+++.|.+++..|.+.|.. ||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~-~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~ 370 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFA-VDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGLP 370 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCc-cchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCCH
Confidence 666666666666666666666654 666666666666666666666666666653 24555666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 291 DRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEM 370 (521)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 370 (521)
++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.++.+|++.|++++|.++|++|
T Consensus 371 ~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m 450 (857)
T PLN03077 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450 (857)
T ss_pred HHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 66666666666666666666666666666666666666666666555555555555555555555555555555555544
Q ss_pred HHc------------------------------CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----------
Q 009977 371 KER------------------------------GCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGI---------- 410 (521)
Q Consensus 371 ~~~------------------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------- 410 (521)
.+. +..||..||+.++.+|++.|+.+.+.+++..+.+.|+
T Consensus 451 ~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 451 PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred CCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 321 2444554444444333333333322222222222221
Q ss_pred --------------------ccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009977 411 --------------------YLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAI 470 (521)
Q Consensus 411 --------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 470 (521)
.+|..+|+.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.+
T Consensus 531 i~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH
Confidence 456677888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 009977 471 ALFGLV-EMGFKPESDSWALLVELICRGRKLLFAFELLDELV 511 (521)
Q Consensus 471 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 511 (521)
+|+.|. +.|+.|+..+|..++.+|++.|++++|.+++++|.
T Consensus 611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 999998 68999999999999999999999999999999985
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-59 Score=473.89 Aligned_cols=407 Identities=15% Similarity=0.233 Sum_probs=372.2
Q ss_pred CCCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHH
Q 009977 56 RSRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLN 135 (521)
Q Consensus 56 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (521)
.++..+|+.++.++.+.++++.|.+++..+ ...|+.||..+|+.++..|.+.|++++|.++|++|.+ |+..+|+.
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m-~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~ 194 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHV-ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGT 194 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHH
Confidence 356788999999999999999999999888 4568889999999999999999999999999999864 57778999
Q ss_pred HHHHHHccCcHHHHHHHHHhhccccCC-----------------------------------CCCHhHHHHHHHHHHhcC
Q 009977 136 LMKHFSNCSLHERVLEMFHKIHPITRE-----------------------------------KPSLKAISTCLNLLIESN 180 (521)
Q Consensus 136 l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------------------------------~~~~~~~~~ll~~~~~~~ 180 (521)
++.+|++.|++++|+++|++|.. .+. .++..+++.++.+|++.|
T Consensus 195 li~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 195 IIGGLVDAGNYREAFALFREMWE-DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHH-hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 99999999999999999998864 233 345556678889999999
Q ss_pred CHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009977 181 QVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIEL 260 (521)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 260 (521)
++++|.++|+.|. ++|..+||.++.+|++.|++++|.++|++|.+.|.. ||..||+.++.+|++.|++++|.++
T Consensus 274 ~~~~A~~vf~~m~-----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~-pd~~t~~~ll~a~~~~g~~~~a~~i 347 (697)
T PLN03081 274 DIEDARCVFDGMP-----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS-IDQFTFSIMIRIFSRLALLEHAKQA 347 (697)
T ss_pred CHHHHHHHHHhCC-----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhccchHHHHHH
Confidence 9999999999884 368999999999999999999999999999999986 9999999999999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009977 261 FEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLL 340 (521)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 340 (521)
+..|.+. |+.||..+++.++.+|++.|++++|.++|++|. .+|..+|+.|+.+|++.|+.++|.++|++|.+.|+
T Consensus 348 ~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~ 422 (697)
T PLN03081 348 HAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422 (697)
T ss_pred HHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999887 799999999999999999999999999999996 47899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHH
Q 009977 341 KPDTIGYTTLINCFCRAGRVDEALELLKEMKE-RGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRI 419 (521)
Q Consensus 341 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 419 (521)
.||..+|+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.++++++ +..|+..+|+.
T Consensus 423 ~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~ 499 (697)
T PLN03081 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAA 499 (697)
T ss_pred CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHH
Confidence 99999999999999999999999999999986 599999999999999999999999999998765 57899999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009977 420 VLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES 484 (521)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 484 (521)
++.+|...|+++.|..+++++. ++.| +..+|..++..|++.|++++|.++++.|.+.|+.+.+
T Consensus 500 Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 500 LLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 9999999999999999999998 5667 5779999999999999999999999999999986544
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-58 Score=477.87 Aligned_cols=444 Identities=15% Similarity=0.200 Sum_probs=337.6
Q ss_pred ccccccCCCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcC
Q 009977 50 CVDARKRSRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFH 129 (521)
Q Consensus 50 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 129 (521)
.++....++.++||.+|.+|.+.|++++|+++|++| ...|+.||..+|+.++.+|.+.|+.+.|.+++..|.+.|+.|+
T Consensus 244 lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M-~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d 322 (857)
T PLN03077 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM-RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322 (857)
T ss_pred HHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc
Confidence 456667789999999999999999999999999999 5668999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHH
Q 009977 130 EGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILI 209 (521)
Q Consensus 130 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 209 (521)
..+++.++.+|++.|++++|.++|++|. .|+..+|+.++.+|.+.|++++|.++|+.|.+. ++.||..+|+.++
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~Pd~~t~~~ll 396 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD-NVSPDEITIASVL 396 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCCCceeHHHHH
Confidence 9999999999999999999999999986 578889999999999999999999999998654 8889988998888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Q 009977 210 KHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGK 289 (521)
Q Consensus 210 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 289 (521)
.+|++.|++++|.++++.+.+.|.. ++..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~-~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d~vs~~~mi~~~~~~g~ 470 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLI-SYVVVANALIEMYSKCKCIDKALEVFHNIPE-----KDVISWTSIIAGLRLNNR 470 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----CCeeeHHHHHHHHHHCCC
Confidence 8888888888888888888888876 7888888888888888888888888887743 356677777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009977 290 VDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKE 369 (521)
Q Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 369 (521)
.++|..+|++|.. ++.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.++..+++.++.+|++.|++++|.++|+.
T Consensus 471 ~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~ 549 (857)
T PLN03077 471 CFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS 549 (857)
T ss_pred HHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHh
Confidence 7777777777764 466777777777777777776666666666666666666666666666666666666666666665
Q ss_pred HHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HCCCCCC
Q 009977 370 MKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLML-CRGFLPH 448 (521)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~p~ 448 (521)
+ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|. +.|+.|+
T Consensus 550 ~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 550 H-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred c-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 4 246666666666666666666666666666666666666666666666666666666666666666 4566666
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCc
Q 009977 449 YATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKES 515 (521)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 515 (521)
..+|+.++++|++.|++++|.+++++| .+.|+..+|..|+.+|...|+.+.+....+++.+..|
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p 688 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDP 688 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Confidence 666666666666666666666666555 2355555555555555555555555444444444433
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.9e-31 Score=280.17 Aligned_cols=431 Identities=13% Similarity=0.062 Sum_probs=230.9
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHH
Q 009977 61 SHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHF 140 (521)
Q Consensus 61 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (521)
.|..+...+...|++++|.+.|+++.... +.+...+..++..+...|++++|.+.++++.+.+ +.+..++..+...+
T Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 543 (899)
T TIGR02917 467 LHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLY 543 (899)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 44444445555555555555555443321 2233344444445555555555555555554433 33344444555555
Q ss_pred HccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHH
Q 009977 141 SNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLES 220 (521)
Q Consensus 141 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 220 (521)
.+.|++++|...++++.. ..+.+...+..++..+...|++++|..+++.+.+ ..+.+..+|..++..+...|++++
T Consensus 544 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 544 LRTGNEEEAVAWLEKAAE--LNPQEIEPALALAQYYLGKGQLKKALAILNEAAD--AAPDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHcCCHHHHHHHHHHHHH--hCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCCHHH
Confidence 555555555555555432 1223333444455555555555555555555543 223344555555555555555555
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009977 221 AFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFM 300 (521)
Q Consensus 221 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 300 (521)
|...|+++.+..+ .+...+..++.++...|++++|...|+++.+. .+.+..++..++..+...|++++|.++++.+
T Consensus 620 A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 620 AVSSFKKLLALQP--DSALALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555554443 34445555555555555555555555555543 2334455555555555555555555555555
Q ss_pred HHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHh
Q 009977 301 KNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIV 380 (521)
Q Consensus 301 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 380 (521)
.+.+ +.+...+..++..+...|++++|.+.|+.+.... |+..++..+..++.+.|++++|.+.++.+.+..+. +..
T Consensus 696 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~ 771 (899)
T TIGR02917 696 QKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAV 771 (899)
T ss_pred HhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH
Confidence 5543 3344455555555566666666666666555432 33344455555556666666666666665554332 455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 009977 381 TFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRL 459 (521)
Q Consensus 381 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~ 459 (521)
.+..+...|...|++++|..+|+++.+..+ .+..+++.+...+...|+ .+|+.+++++.+. .| +..++..+...+
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLL 847 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHH
Confidence 555566666666666666666666655533 245555666666666666 5566666666542 22 444455556666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 009977 460 CKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELV 511 (521)
Q Consensus 460 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 511 (521)
...|++++|...++++++.+ +.+..++..++.++.+.|+.++|.+++++|+
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66666666666666666554 2255666666666666666666666666664
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.1e-30 Score=274.57 Aligned_cols=439 Identities=13% Similarity=0.061 Sum_probs=257.3
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHH
Q 009977 61 SHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHF 140 (521)
Q Consensus 61 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (521)
.+..+...+.+.|++++|.++|+++.... +.+...+..+...+...|++++|.+.++.+.+.+ +........++..+
T Consensus 365 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 441 (899)
T TIGR02917 365 ALSLLGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSY 441 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHH
Confidence 34455555555566666666665554322 2334445555555555555555555555555443 12223333444455
Q ss_pred HccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHH
Q 009977 141 SNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLES 220 (521)
Q Consensus 141 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 220 (521)
.+.|++++|+++++++.. ..+.+..++..+..++...|++++|...|+++.+. .+.+...+..++..+...|++++
T Consensus 442 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 442 LRSGQFDKALAAAKKLEK--KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI--EPDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HhcCCHHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHCCCHHH
Confidence 555555555555555542 22334455666666666666666666666666532 22344456666666666666666
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009977 221 AFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFM 300 (521)
Q Consensus 221 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 300 (521)
|.+.|+++....+ .+..++..++..+...|++++|..+++++.... +.+...+..++..+...|++++|..+++.+
T Consensus 518 A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 518 AIQRFEKVLTIDP--KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred HHHHHHHHHHhCc--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666666554 455566666666666666666666666665542 344455566666666666666666666666
Q ss_pred HHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHh
Q 009977 301 KNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIV 380 (521)
Q Consensus 301 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 380 (521)
.+.. +.+...|..++.++...|++++|...|+.+.+.. ..+...+..+...+...|++++|..+++++.+..+. +..
T Consensus 594 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 670 (899)
T TIGR02917 594 ADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTE 670 (899)
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHH
Confidence 6543 4455566666666666666666666666665532 123555666666666666666666666666655332 455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009977 381 TFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLC 460 (521)
Q Consensus 381 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 460 (521)
++..++..+...|++++|..+++.+...+. .+...+..+...+...|++++|...|+.+... .|+..++..++.++.
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 747 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALL 747 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHH
Confidence 666666666666666666666666665532 24555666666666666677776666666643 344455555666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccC
Q 009977 461 KAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESGT 517 (521)
Q Consensus 461 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 517 (521)
+.|++++|...++++.+.. +.+...+..++..|...|++++|.+.|+++++..|.+
T Consensus 748 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 803 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN 803 (899)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 6666666666666666543 3345566666666666666666766666666665543
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=2.7e-26 Score=207.35 Aligned_cols=435 Identities=16% Similarity=0.099 Sum_probs=322.0
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHH
Q 009977 62 HGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFS 141 (521)
Q Consensus 62 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (521)
...+..-..+.|++++|++.-...-+++ +.+......+-..+....+.+...+--....+.. +.-..+|..+.+.+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 4456666778899999998877653333 2222223333445555555665544444444333 445678888888888
Q ss_pred ccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHH-HHHHHHHHHHhcCChHH
Q 009977 142 NCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTC-IFNILIKHHCKRGTLES 220 (521)
Q Consensus 142 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~ 220 (521)
..|++++|+..|+.+.+. .+.....|..+..++...|+.+.|.+.|...+ .+.|+.. ....+...+...|++.+
T Consensus 128 erg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~al---qlnP~l~ca~s~lgnLlka~Grl~e 202 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEAL---QLNPDLYCARSDLGNLLKAEGRLEE 202 (966)
T ss_pred HhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHH---hcCcchhhhhcchhHHHHhhcccch
Confidence 888888888888887632 23445678888888888888888888888776 3556544 44556666667888888
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009977 221 AFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFM 300 (521)
Q Consensus 221 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 300 (521)
|...|.+..+..+ .-...|..|...+-.+|+...|+..|++..+.++.- ...|..|...|...+.+++|...|.+.
T Consensus 203 a~~cYlkAi~~qp--~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f--~dAYiNLGnV~ke~~~~d~Avs~Y~rA 278 (966)
T KOG4626|consen 203 AKACYLKAIETQP--CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF--LDAYINLGNVYKEARIFDRAVSCYLRA 278 (966)
T ss_pred hHHHHHHHHhhCC--ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc--hHHHhhHHHHHHHHhcchHHHHHHHHH
Confidence 8888888877665 345678888888888888888888888887764322 346788888888888888888888888
Q ss_pred HHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH
Q 009977 301 KNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD-TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADI 379 (521)
Q Consensus 301 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 379 (521)
.... +....++..+...|...|+.+.|+..+++..+ ..|+ ...|+.|..++-..|++.+|.+.+.+.+...+. ..
T Consensus 279 l~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-ha 354 (966)
T KOG4626|consen 279 LNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HA 354 (966)
T ss_pred HhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cH
Confidence 7764 45566777788888888888888888888876 3555 678888888888888888888888888876544 56
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 009977 380 VTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVR 458 (521)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~ 458 (521)
.+.+.|...|...|.+++|..+|....+..+. -....+.|...|-+.|++++|+..|++++ .+.| -...|+.+...
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEAL--RIKPTFADALSNMGNT 431 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHH--hcCchHHHHHHhcchH
Confidence 67888888888888888888888888775332 34567788888888888888888888888 5677 45677888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHHHcCccC
Q 009977 459 LCKAGMAEDAAIALFGLVEMGFKPES-DSWALLVELICRGRKLLFAFELLDELVIKESGT 517 (521)
Q Consensus 459 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 517 (521)
|...|+.+.|.+.+.+++.. .|.. +.+..|...|...|+..+|+..++++++-.|+.
T Consensus 432 ~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 88888888888888887765 4554 677788888888888888888888888877664
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1e-23 Score=224.00 Aligned_cols=430 Identities=10% Similarity=0.037 Sum_probs=333.6
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCH-HHH----------
Q 009977 65 AISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHE-GIF---------- 133 (521)
Q Consensus 65 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~---------- 133 (521)
....+...|++++|+..|+++++.. +.+...+..+..++.+.|++++|+..|++..+....... ..+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 3556778899999999999987654 557888999999999999999999999999876532211 111
Q ss_pred --HHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHH
Q 009977 134 --LNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKH 211 (521)
Q Consensus 134 --~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 211 (521)
......+.+.|++++|++.|+++... .+.+..++..+..++...|++++|++.|+++++. .+.+...+..+...
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l 428 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 12345677889999999999998743 3445667788899999999999999999998753 23456677777777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCC-------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 009977 212 HCKRGTLESAFEVLKEMKKSQMSY-------PNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGF 284 (521)
Q Consensus 212 ~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 284 (521)
|. .++.++|..+++.+....... .....+..+...+...|++++|++.|+++++.. +.+...+..+...|
T Consensus 429 ~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 429 YR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDL 505 (1157)
T ss_pred HH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 74 567899998887654322100 112345567788889999999999999998864 55677888899999
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHH
Q 009977 285 CRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTI---------GYTTLINCFC 355 (521)
Q Consensus 285 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------~~~~l~~~~~ 355 (521)
.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++.. .+..+...+.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999998764 4456666666777788999999999998765432222221 1234566788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHH
Q 009977 356 RAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIE 435 (521)
Q Consensus 356 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (521)
..|+.++|+.+++. .+.+...+..+...+.+.|++++|+..|+++.+..+. +...+..++..+...|++++|++
T Consensus 585 ~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 585 DSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 89999999998872 1335667788999999999999999999999987544 67889999999999999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C---CHHHHHHHHHHHHccCcHHHHHHHHHH
Q 009977 436 LLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFK--P---ESDSWALLVELICRGRKLLFAFELLDE 509 (521)
Q Consensus 436 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 509 (521)
.++.+.+ ..| +...+..+..++...|++++|..+++++++.... | +...+..+...+...|+.++|.+.|++
T Consensus 659 ~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 659 QLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9998875 344 5666777888999999999999999999865311 1 224566678889999999999999999
Q ss_pred HHH
Q 009977 510 LVI 512 (521)
Q Consensus 510 m~~ 512 (521)
++.
T Consensus 737 Al~ 739 (1157)
T PRK11447 737 AMV 739 (1157)
T ss_pred HHh
Confidence 986
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=4.2e-23 Score=219.26 Aligned_cols=443 Identities=12% Similarity=0.046 Sum_probs=282.5
Q ss_pred CCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHH----------------HHHHHHHHhcCCchHHHHHHHHh
Q 009977 58 RFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATY----------------ATILDKLARYKKFEAVDAVLRQM 121 (521)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~a~~~~~~~ 121 (521)
+...+..++..+...|+.++|.+.++++.+.. |.+...+ ..+...+...|++++|.+.|+.+
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34456677777888899999999998886554 2232222 23344677889999999999988
Q ss_pred hhccCCcCHHH-HHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC---
Q 009977 122 TYETCKFHEGI-FLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLR--- 197 (521)
Q Consensus 122 ~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--- 197 (521)
.+.+ +++... ...........|++++|++.|+++... .+.+......+...+...|+.++|+..++++.+...
T Consensus 139 l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~--~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~ 215 (1157)
T PRK11447 139 FNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD--YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRD 215 (1157)
T ss_pred ccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchH
Confidence 8764 333321 111222233458888888888888642 344555677778888888888888888887643210
Q ss_pred --------------CC--------------CcHH----H-----------------HHHHHHHHHhcCChHHHHHHHHHH
Q 009977 198 --------------LK--------------PNTC----I-----------------FNILIKHHCKRGTLESAFEVLKEM 228 (521)
Q Consensus 198 --------------~~--------------~~~~----~-----------------~~~l~~~~~~~g~~~~A~~~~~~~ 228 (521)
.. |+.. . .......+...|++++|+..|++.
T Consensus 216 ~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~a 295 (1157)
T PRK11447 216 AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQA 295 (1157)
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 00 0000 0 011244566788899999999988
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH------------HHHHHHHHhCCCHHHHHHH
Q 009977 229 KKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTY------------NVLIDGFCRGGKVDRAKKI 296 (521)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~~~~~~a~~~ 296 (521)
.+..+ .+...+..+..++.+.|++++|+..|++..+..+..+....+ ......+.+.|++++|+..
T Consensus 296 L~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~ 373 (1157)
T PRK11447 296 VRANP--KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERL 373 (1157)
T ss_pred HHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88776 577888888888999999999999998888754322222211 1224456778888888888
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------------------
Q 009977 297 MEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTT--------------------------- 349 (521)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--------------------------- 349 (521)
|+++++.. +.+...+..+..++...|++++|++.|+++.+.... +...+..
T Consensus 374 ~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 374 YQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence 88888764 455667777888888888888888888887764221 1222222
Q ss_pred ---------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCH
Q 009977 350 ---------------LINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNK 414 (521)
Q Consensus 350 ---------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 414 (521)
+...+...|++++|+..|++..+..+. +...+..+...|.+.|++++|...++++.+..+. +.
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~ 529 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DP 529 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CH
Confidence 223345678888888888888876543 5566777888888888888888888887664322 22
Q ss_pred H--------------------------------------------------------------------------HHHHH
Q 009977 415 A--------------------------------------------------------------------------SYRIV 420 (521)
Q Consensus 415 ~--------------------------------------------------------------------------~~~~l 420 (521)
. .+..+
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~L 609 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTL 609 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHH
Confidence 1 12223
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc
Q 009977 421 LNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRK 499 (521)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 499 (521)
...+.+.|++++|+..|+++++. .| +...+..++..+...|++++|...++.+.+.. +.+...+..+..++...|+
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~ 686 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGD 686 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCC
Confidence 33444555566666666655542 33 45555556666666666666666666555431 1223444555555666666
Q ss_pred HHHHHHHHHHHHHcC
Q 009977 500 LLFAFELLDELVIKE 514 (521)
Q Consensus 500 ~~~A~~~~~~m~~~~ 514 (521)
+++|.+++++++...
T Consensus 687 ~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 687 TAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHHHhhhC
Confidence 666666666666543
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=1.5e-24 Score=196.16 Aligned_cols=406 Identities=15% Similarity=0.116 Sum_probs=338.2
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcH
Q 009977 67 SLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLH 146 (521)
Q Consensus 67 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (521)
.++.+..+++.....-..+++.. +.-..+|..+...+...|++++|..+++.+++.. +-....|..+..++...|+.
T Consensus 90 ai~~q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~ 166 (966)
T KOG4626|consen 90 AIFFQGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDL 166 (966)
T ss_pred hhhhcccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCC
Confidence 34555566666665555554432 4557889999999999999999999999999886 55678999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc-HHHHHHHHHHHHhcCChHHHHHH
Q 009977 147 ERVLEMFHKIHPITREKPSL-KAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPN-TCIFNILIKHHCKRGTLESAFEV 224 (521)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 224 (521)
+.|.+.|.+... ..|+. .+...+...+...|++.+|...|.++++ ..|. ..+|..|.-.+..+|+.-.|+.-
T Consensus 167 ~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~---~qp~fAiawsnLg~~f~~~Gei~~aiq~ 240 (966)
T KOG4626|consen 167 ELAVQCFFEALQ---LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE---TQPCFAIAWSNLGCVFNAQGEIWLAIQH 240 (966)
T ss_pred cccHHHHHHHHh---cCcchhhhhcchhHHHHhhcccchhHHHHHHHHh---hCCceeeeehhcchHHhhcchHHHHHHH
Confidence 999999988753 24443 3444566777789999999999998875 2343 55899999999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009977 225 LKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (521)
|++..+..+. -...|-.|+..|...+.+++|+..|.+..... +-....+..+...|...|..+.|+..|++.++..
T Consensus 241 y~eAvkldP~--f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~ 316 (966)
T KOG4626|consen 241 YEEAVKLDPN--FLDAYINLGNVYKEARIFDRAVSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ 316 (966)
T ss_pred HHHhhcCCCc--chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHhcC
Confidence 9999998874 45678999999999999999999999998752 4557788889999999999999999999999875
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHH
Q 009977 305 CNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD-TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFN 383 (521)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 383 (521)
+.-+..|+.|..++-..|+..+|++.+.+.... .|+ ..+.+.|...|...|.+++|..+|....+-.+. -...++
T Consensus 317 -P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~n 392 (966)
T KOG4626|consen 317 -PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHN 392 (966)
T ss_pred -CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhh
Confidence 445779999999999999999999999999874 344 778899999999999999999999999886433 356789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 009977 384 IILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKA 462 (521)
Q Consensus 384 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 462 (521)
.|...|-+.|++++|+..+++.++..+. -...|+.+...|-..|+.+.|++.+.+++ .+.| -.+.++.|...|...
T Consensus 393 NLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda~~NmGnt~ke~g~v~~A~q~y~rAI--~~nPt~AeAhsNLasi~kDs 469 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALRIKPT-FADALSNMGNTYKEMGDVSAAIQCYTRAI--QINPTFAEAHSNLASIYKDS 469 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHhcCch-HHHHHHhcchHHHHhhhHHHHHHHHHHHH--hcCcHHHHHHhhHHHHhhcc
Confidence 9999999999999999999999886332 35789999999999999999999999999 4677 456788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 009977 463 GMAEDAAIALFGLVEMGFKPES-DSWALLVELI 494 (521)
Q Consensus 463 g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~ 494 (521)
|++.+|+.-|++.++. +||. ..|-.++.++
T Consensus 470 Gni~~AI~sY~~aLkl--kPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 470 GNIPEAIQSYRTALKL--KPDFPDAYCNLLHCL 500 (966)
T ss_pred CCcHHHHHHHHHHHcc--CCCCchhhhHHHHHH
Confidence 9999999999999886 5665 5565555543
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=3.1e-22 Score=199.88 Aligned_cols=401 Identities=11% Similarity=0.002 Sum_probs=235.8
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHH
Q 009977 62 HGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFS 141 (521)
Q Consensus 62 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (521)
+......+.+.|++++|+..|++++.. .|+...|..+..+|.+.|++++|...++..++.+ +....++..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 445677888999999999999998754 5688889999999999999999999999999876 556778999999999
Q ss_pred ccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHH----------------
Q 009977 142 NCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIF---------------- 205 (521)
Q Consensus 142 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------- 205 (521)
..|++++|+..|..+....+ .+......++..+........+...++.- ....|.....
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~a~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDG--FRNEQSAQAVERLLKKFAESKAKEILETK---PENLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCC--CccHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCCHHHHHHHHHHccCCcchhhh
Confidence 99999999998876643211 11111111111111111111222222110 0001111100
Q ss_pred --------------HHHHHH---HHhcCChHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 206 --------------NILIKH---HCKRGTLESAFEVLKEMKKSQMS-YPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 206 --------------~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
..+... ....+++++|.+.|++....+.. ......|..++..+...|++++|+..|++.+..
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 001000 01234566666666666654311 123445666666666666666666666666654
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 009977 268 DQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGY 347 (521)
Q Consensus 268 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 347 (521)
. +.....|..+...+...|++++|...|+.+++.. +.+..++..++..+...|++++|...|++..+... .+...+
T Consensus 361 ~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~ 436 (615)
T TIGR00990 361 D--PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSH 436 (615)
T ss_pred C--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHH
Confidence 2 2334456666666666666666666666666553 44455666666666666666666666666665321 134555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHH------HHHHHH
Q 009977 348 TTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKA------SYRIVL 421 (521)
Q Consensus 348 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~ 421 (521)
..+...+.+.|++++|+..|++..+..+. +...++.+...+...|++++|.+.|++........+.. .++..+
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 55666666666666666666666654322 45566666666666666666666666666543221111 111112
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 422 NFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
..+...|++++|..+++++++. .| +...+..+...+.+.|++++|...|++..+.
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2223346666666666666543 34 3334556666666666666666666666554
No 14
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.93 E-value=1.6e-21 Score=198.21 Aligned_cols=405 Identities=12% Similarity=0.024 Sum_probs=257.7
Q ss_pred HHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHh
Q 009977 99 ATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIE 178 (521)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (521)
.-.+.+....|+.++|++++.+..... +.....+..+...+...|++++|++.|++.... .+.+...+..++.++..
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 344445556777777777777776532 344555677777777777777777777776532 23445556666667777
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009977 179 SNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAI 258 (521)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 258 (521)
.|++++|...++++++. .+.+.. +..+..++...|+.++|+..++++.+..| .+...+..++.++...|..++|+
T Consensus 96 ~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P--~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 96 AGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP--QTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCChHHHH
Confidence 77777777777777643 333455 77777777777777778777777777665 45556666677777777777777
Q ss_pred HHHHHHHhcCCCCCCH------HHHHHHHHHHH-----hCCCH---HHHHHHHHHHHHc-CCCCCcc-hHH----HHHHH
Q 009977 259 ELFEEMVSKDQILPDA------LTYNVLIDGFC-----RGGKV---DRAKKIMEFMKNN-GCNPNVF-NYT----TLMNG 318 (521)
Q Consensus 259 ~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~ 318 (521)
+.++.+.. .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+..
T Consensus 171 ~~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 171 GAIDDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 77765542 1211 01111222221 11223 6677777777753 1122221 111 11233
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---cHhHHHHHHHHHHhcCC
Q 009977 319 FCKEGKLQEAKEVFDEMKNFLLK-PDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKA---DIVTFNIILGGLCREGK 394 (521)
Q Consensus 319 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~ 394 (521)
+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+++.+..... .......+..++...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 45667888888888887765422 321 12224567778888888888888876653221 12345556667778888
Q ss_pred HHHHHHHHHHHHHCCC-----------ccC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009977 395 IEEALGMLEKLWYDGI-----------YLN---KASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLC 460 (521)
Q Consensus 395 ~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 460 (521)
+++|..+++.+....+ .|+ ...+..+...+...|+.++|++.++++... .+.+...+..++..+.
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 8888888887776521 122 123455666777888888888888888753 2336777778888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccCcc
Q 009977 461 KAGMAEDAAIALFGLVEMGFKPE-SDSWALLVELICRGRKLLFAFELLDELVIKESGTIQ 519 (521)
Q Consensus 461 ~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 519 (521)
..|++++|+..++++++.. |+ ...+...+..+.+.|++++|..+++++++..|++..
T Consensus 405 ~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred hcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 8888888888888887763 44 466667777778888888888888888888777654
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=2.2e-22 Score=191.20 Aligned_cols=294 Identities=17% Similarity=0.147 Sum_probs=141.5
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhCC
Q 009977 211 HHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILP--DALTYNVLIDGFCRGG 288 (521)
Q Consensus 211 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~ 288 (521)
.+...|++++|...|+++.+.++ .+..++..++..+...|++++|..+++.+.......+ ....+..++..|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP--ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 33444555555555555554443 3344455555555555555555555555543211110 0123444455555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 009977 289 KVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD----TIGYTTLINCFCRAGRVDEAL 364 (521)
Q Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~ 364 (521)
++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 5555555555554432 23344455555555555555555555555544322211 112333444445555555555
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 009977 365 ELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRG 444 (521)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (521)
..|+++.+.... +...+..++..+.+.|++++|.++++++...+......++..++.+|...|++++|...++++.+.
T Consensus 201 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 201 ALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 555555544321 233444555555555555555555555554322222334455555555555555555555555532
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCcHHHHHHHHHHHHH
Q 009977 445 FLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICR---GRKLLFAFELLDELVI 512 (521)
Q Consensus 445 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~ 512 (521)
.|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.++|..++++|.+
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 344444455555555555555555555555543 3555555544444432 3355555555555554
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=1.7e-21 Score=193.64 Aligned_cols=361 Identities=12% Similarity=0.021 Sum_probs=270.5
Q ss_pred HHHhcCCchHHHHHHHHhhhcc--CCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCC
Q 009977 104 KLARYKKFEAVDAVLRQMTYET--CKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQ 181 (521)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 181 (521)
.+.+..+|+..--++....+.. -..+..-...++..+.+.|++++|+.+++.+.. ..+-+...+..++.+....|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~--~~p~~~~~l~~l~~~~l~~g~ 91 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVL--TAKNGRDLLRRWVISPLASSQ 91 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHH--hCCCchhHHHHHhhhHhhcCC
Confidence 3456677776666665554331 112233445567777888999999999888863 334445566667777778999
Q ss_pred HHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 009977 182 VDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELF 261 (521)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 261 (521)
+++|...++++.+. .+.+...+..+...+...|++++|.+.++++....+ .+...+..++..+...|++++|...+
T Consensus 92 ~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P--~~~~a~~~la~~l~~~g~~~eA~~~~ 167 (656)
T PRK15174 92 PDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS--GNSQIFALHLRTLVLMDKELQAISLA 167 (656)
T ss_pred HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCChHHHHHHH
Confidence 99999999988752 344567888888999999999999999999888765 56778888888999999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 009977 262 EEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK 341 (521)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 341 (521)
+.+.... +.+...+..+ ..+...|++++|...++.+.+....++...+..++..+...|++++|+..++++.+...
T Consensus 168 ~~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p- 243 (656)
T PRK15174 168 RTQAQEV--PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL- 243 (656)
T ss_pred HHHHHhC--CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-
Confidence 8887653 2333344333 34778899999999998887764233444455567788889999999999998887532
Q ss_pred CCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHH
Q 009977 342 PDTIGYTTLINCFCRAGRVDE----ALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASY 417 (521)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 417 (521)
.+...+..+...+...|++++ |+..|+++.+..+. +...+..+...+...|++++|...++++....+. +...+
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~ 321 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVR 321 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 247777888888888998885 78889888887544 6778888899999999999999999998887543 56667
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 418 RIVLNFSCQKGELEKAIELLRLMLCRGFLPHY-ATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 418 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
..+..++...|++++|+..++.+.+. .|+. ..+..+..++...|+.++|...|+++.+.
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77888888999999999999988854 4543 33444567788899999999999988875
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=2.5e-22 Score=190.77 Aligned_cols=303 Identities=15% Similarity=0.128 Sum_probs=174.5
Q ss_pred HHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC--cHHHHHHHHHHHHhcC
Q 009977 139 HFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKP--NTCIFNILIKHHCKRG 216 (521)
Q Consensus 139 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 216 (521)
.+...|++++|+..|+++... .+.+..++..+...+...|++++|..+++.+.......+ ....+..++..|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 344445555555555555421 222333445555555555555555555555543211111 1234566666677777
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhCCCHHHH
Q 009977 217 TLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD---ALTYNVLIDGFCRGGKVDRA 293 (521)
Q Consensus 217 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 293 (521)
++++|..+|+++.+..+ .+..++..++..+.+.|++++|++.++.+.+..+..+. ...+..++..+.+.|++++|
T Consensus 122 ~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 122 LLDRAEELFLQLVDEGD--FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CHHHHHHHHHHHHcCCc--chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 77777777777665543 45566666777777777777777777766654321111 12334555566666777777
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009977 294 KKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKER 373 (521)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 373 (521)
.+.++++.+.. +.+...+..++..+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777666543 33344556666666677777777777776665322212344566666666777777777777766665
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCCCCHH
Q 009977 374 GCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ---KGELEKAIELLRLMLCRGFLPHYA 450 (521)
Q Consensus 374 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~ 450 (521)
. |+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.+++++.+.++.|++.
T Consensus 279 ~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 Y--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred C--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 3 34444566666667777777777777666654 4555566655555443 346666777777666655555444
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1.1e-20 Score=187.94 Aligned_cols=385 Identities=14% Similarity=0.086 Sum_probs=304.1
Q ss_pred HHHhcCChHHHHHHHHHhhhCCC-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcH
Q 009977 68 LIKCEKEPQCALEIFNTVSEQKG-FNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLH 146 (521)
Q Consensus 68 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (521)
.+.++.+|+.---+|....+... -..+..-...++..+.+.|++++|..+++...... +-+...+..++......|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCH
Confidence 45677888887777766543211 11122334556778889999999999999999875 56677788888888899999
Q ss_pred HHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 009977 147 ERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLK 226 (521)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 226 (521)
++|++.|+++... .+.+...+..+...+...|++++|...++++.+. .+.+...+..++..+...|++++|...++
T Consensus 93 ~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 93 DAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 9999999999743 3455667888899999999999999999999752 34457789999999999999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 009977 227 EMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCN 306 (521)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 306 (521)
.+....+. +...+..+ ..+...|++++|+..++.++...+ .++......+..++...|++++|+..++++.+.. +
T Consensus 169 ~~~~~~P~--~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~-~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p 243 (656)
T PRK15174 169 TQAQEVPP--RGDMIATC-LSFLNKSRLPEDHDLARALLPFFA-LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-L 243 (656)
T ss_pred HHHHhCCC--CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC-CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 98877663 44444444 347889999999999999877632 2334455666778899999999999999999875 5
Q ss_pred CCcchHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHH
Q 009977 307 PNVFNYTTLMNGFCKEGKLQE----AKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTF 382 (521)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 382 (521)
.+...+..+...+...|++++ |...|+++.+... .+...+..+...+...|++++|+..+++..+..+. +...+
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~ 321 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVR 321 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 677788899999999999986 8999999987532 25778899999999999999999999999987654 56678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009977 383 NIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKA 462 (521)
Q Consensus 383 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 462 (521)
..+..++...|++++|...++++...++. +...+..+..++...|+.++|...|+++.+. .|+.. .
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~--~P~~~-----------~ 387 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQA--RASHL-----------P 387 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Chhhc-----------h
Confidence 88999999999999999999999886433 2334445567788999999999999999854 55432 3
Q ss_pred CCHHHHHHHHHHHHHC
Q 009977 463 GMAEDAAIALFGLVEM 478 (521)
Q Consensus 463 g~~~~a~~~~~~~~~~ 478 (521)
..+++|...+.+..+.
T Consensus 388 ~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 388 QSFEEGLLALDGQISA 403 (656)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 4556788888877754
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=1.1e-19 Score=184.98 Aligned_cols=192 Identities=14% Similarity=0.014 Sum_probs=122.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 009977 320 CKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEAL 399 (521)
Q Consensus 320 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 399 (521)
...|++++|...|+++... .|+...+..+...+.+.|++++|...+++..+..+. +...+..+...+...|++++|.
T Consensus 520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHH
Confidence 4555566666655554432 233333444455555666666666666666554321 2222223333334457777777
Q ss_pred HHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 400 GMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
..+++..+. .|+...+..+..++.+.|++++|+..++++++. .| +...++.+..++...|++++|+..+++.++.
T Consensus 597 ~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 597 NDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 777777765 345667777777777888888888888887743 45 5666677777777888888888888877765
Q ss_pred CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccCcc
Q 009977 479 GFKPESDSWALLVELICRGRKLLFAFELLDELVIKESGTIQ 519 (521)
Q Consensus 479 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 519 (521)
. +-+...+..+..++...|++++|...++++++..|.+..
T Consensus 673 ~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 673 L-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence 3 334567777888888888888888888888877776543
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=3.2e-20 Score=188.68 Aligned_cols=413 Identities=8% Similarity=0.016 Sum_probs=311.2
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccC
Q 009977 65 AISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCS 144 (521)
Q Consensus 65 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 144 (521)
.+.+....|+.++|++++..+.... +.+...+..+...+...|++++|..++++.++.. |.+...+..++..+...|
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 3455677899999999999985422 4566679999999999999999999999999875 566778888999999999
Q ss_pred cHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q 009977 145 LHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEV 224 (521)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 224 (521)
++++|+..++++... .+.+.. +..+..++...|+.++|+..++++.+. .+.+...+..++.++...|..++|+..
T Consensus 98 ~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 98 QYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 999999999998743 344445 778888999999999999999999863 344566777888899999999999999
Q ss_pred HHHHHhCCCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHhcCCCCCCHH-HH----HHHHHHHH
Q 009977 225 LKEMKKSQMSYPNL------ITYSTLIDGLC-----KNGRF---REAIELFEEMVSKDQILPDAL-TY----NVLIDGFC 285 (521)
Q Consensus 225 ~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~~~~~~~~~-~~----~~l~~~~~ 285 (521)
++.... . |+. .....++.... ..+++ ++|++.++.+.+.....|+.. .+ ...+.++.
T Consensus 173 l~~~~~-~---p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 173 IDDANL-T---PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHhCCC-C---HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 987664 2 221 11222222222 22334 778989998886422233321 11 11134556
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHH
Q 009977 286 RGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKP---DTIGYTTLINCFCRAGRVDE 362 (521)
Q Consensus 286 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 362 (521)
..|++++|+..|+.+.+.+.+........+...|...|++++|+..|+++.+..... .......+..++...|++++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 779999999999999987522111233336788999999999999999987643221 13456667778899999999
Q ss_pred HHHHHHHHHHcCC-----------CCc---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCC
Q 009977 363 ALELLKEMKERGC-----------KAD---IVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKG 428 (521)
Q Consensus 363 A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (521)
|..+++.+.+..+ .|+ ...+..+...+...|+.++|+++++++....+. +...+..+...+...|
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 9999999987632 122 234567788899999999999999999887544 6788889999999999
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009977 429 ELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELI 494 (521)
Q Consensus 429 ~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 494 (521)
++++|++.++++++ ..| +...+...+..+...|++++|..+++++++. .|+......+-..+
T Consensus 408 ~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 408 WPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred CHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999999995 456 5677777888889999999999999999986 56665544444433
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.92 E-value=3.5e-19 Score=177.56 Aligned_cols=438 Identities=10% Similarity=0.030 Sum_probs=326.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCCH--HHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHc
Q 009977 65 AISLIKCEKEPQCALEIFNTVSEQKGFNHNN--ATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSN 142 (521)
Q Consensus 65 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (521)
-+....++|+++.|++.|+++++.. |+. ..+ .++..+...|+.++|+.++++..... +.....+..++..|..
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~ 114 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHH
Confidence 3445678999999999999997653 443 234 78888888999999999999998322 3344455556778999
Q ss_pred cCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHH
Q 009977 143 CSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAF 222 (521)
Q Consensus 143 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 222 (521)
.|++++|+++|+++.+. .+.+...+..++..+...++.++|++.++.+.+ ..|+...+..++..+...++..+|+
T Consensus 115 ~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~---~dp~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 115 EKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAE---RDPTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred cCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc---cCcchHHHHHHHHHHHhcchHHHHH
Confidence 99999999999999743 344456677888899999999999999999864 4566666655666665677777799
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH--HHHHHHHHh---------CCC--
Q 009977 223 EVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTY--NVLIDGFCR---------GGK-- 289 (521)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~---------~~~-- 289 (521)
+.++++.+..| .+...+..+..++.+.|-...|+++..+-... +.+....+ ...+.-.++ ..+
T Consensus 190 ~~~ekll~~~P--~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~--f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 190 QASSEAVRLAP--TSEEVLKNHLEILQRNRIVEPALRLAKENPNL--VSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHhCC--CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc--cCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 99999999887 57888888999999999999999887764322 22222111 000111111 112
Q ss_pred -HHHHHHHHHHHHHc-CCCCCc-chH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009977 290 -VDRAKKIMEFMKNN-GCNPNV-FNY----TTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDE 362 (521)
Q Consensus 290 -~~~a~~~~~~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 362 (521)
.+.|+.-++.+... +-.|.. ..| .-.+-++...|++.++++.|+.+...+......+-..+..+|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 34455666665542 111321 222 23456678899999999999999987755345577888999999999999
Q ss_pred HHHHHHHHHHcCC-----CCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------cc--CH-HHHHHHHHH
Q 009977 363 ALELLKEMKERGC-----KADIVTFNIILGGLCREGKIEEALGMLEKLWYDGI-----------YL--NK-ASYRIVLNF 423 (521)
Q Consensus 363 A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~--~~-~~~~~l~~~ 423 (521)
|+.+++++..... .++......|..+|...+++++|..+++.+.+..+ .| |- ..+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 9999999976531 22333457889999999999999999999987422 12 22 234456777
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHH
Q 009977 424 SCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLF 502 (521)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 502 (521)
+...|++.+|++.++++.. ..| |......+...+...|.+.+|+..++...... +-+..+....+.++...|++++
T Consensus 426 ~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHH
Confidence 8899999999999999985 355 89999999999999999999999997776652 3345777788899999999999
Q ss_pred HHHHHHHHHHcCccCcc
Q 009977 503 AFELLDELVIKESGTIQ 519 (521)
Q Consensus 503 A~~~~~~m~~~~~~~~~ 519 (521)
|..+.+.+.+..|++..
T Consensus 503 A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 503 MELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHHHhhCCCchh
Confidence 99999999998887653
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=5.8e-19 Score=176.45 Aligned_cols=374 Identities=13% Similarity=0.039 Sum_probs=278.2
Q ss_pred CCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHH
Q 009977 57 SRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNL 136 (521)
Q Consensus 57 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (521)
|+...|..+..+|.+.|++++|++.++.+++.. +.+...|..+..++...|++++|..-|......+ +.+......+
T Consensus 158 p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~-~~~~~~~~~~ 234 (615)
T TIGR00990 158 PDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIID-GFRNEQSAQA 234 (615)
T ss_pred CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCccHHHHHH
Confidence 556678888889999999999999999997654 4567789999999999999999998887665443 2222211122
Q ss_pred HHHHHccCcHHHHHHHHHhhccccCCCCCH------------------------------hHHHHHHHHH---HhcCCHH
Q 009977 137 MKHFSNCSLHERVLEMFHKIHPITREKPSL------------------------------KAISTCLNLL---IESNQVD 183 (521)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------------------------------~~~~~ll~~~---~~~~~~~ 183 (521)
+..+.......++...++.-. ...|.. ..+..+...+ ...++++
T Consensus 235 ~~~~l~~~a~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~ 311 (615)
T TIGR00990 235 VERLLKKFAESKAKEILETKP---ENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYE 311 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHH
Confidence 211111111122222221110 000100 0011111111 2246899
Q ss_pred HHHHHHHHhhhcCCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009977 184 LAQNFLKYSNQHLRLKP-NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFE 262 (521)
Q Consensus 184 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 262 (521)
+|...|+.++......| ....++.+...+...|++++|+..|++.....+ .+...|..+...+...|++++|+..|+
T Consensus 312 ~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P--~~~~~~~~la~~~~~~g~~~eA~~~~~ 389 (615)
T TIGR00990 312 EAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP--RVTQSYIKRASMNLELGDPDKAEEDFD 389 (615)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999876433334 456789999999999999999999999998776 467789999999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 009977 263 EMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKP 342 (521)
Q Consensus 263 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 342 (521)
++++.. +.+...+..+...+...|++++|...|++.++.. +.+...+..+..++.+.|++++|+..|++..+.. ..
T Consensus 390 ~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~ 465 (615)
T TIGR00990 390 KALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PE 465 (615)
T ss_pred HHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 998763 5567889999999999999999999999999875 5567788889999999999999999999988742 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHh------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHH
Q 009977 343 DTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIV------TFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKAS 416 (521)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 416 (521)
+...++.+...+...|++++|+..|++..+.....+.. .++..+..+...|++++|..++++....++. +...
T Consensus 466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a 544 (615)
T TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIA 544 (615)
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHH
Confidence 47889999999999999999999999998764331111 1222223344579999999999999887543 5567
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 009977 417 YRIVLNFSCQKGELEKAIELLRLMLCR 443 (521)
Q Consensus 417 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (521)
+..+...+...|++++|+..|+++.+.
T Consensus 545 ~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 545 VATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 889999999999999999999999854
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=4.4e-18 Score=173.30 Aligned_cols=429 Identities=11% Similarity=-0.028 Sum_probs=304.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh-cCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHcc
Q 009977 65 AISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLAR-YKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNC 143 (521)
Q Consensus 65 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (521)
+...|.+.+++++|+.++.++.+.. +.+......+..+|.. .++ +++..+++. ....+...+..++..|.+.
T Consensus 188 ~~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~ 260 (987)
T PRK09782 188 LLQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYR 260 (987)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHC
Confidence 3677888899999999999886554 3445556666667766 366 666666443 2234667777888888888
Q ss_pred CcHHHHHHHHHhhccccCCCCCHhHHHH------------------------------HHHHHH----------------
Q 009977 144 SLHERVLEMFHKIHPITREKPSLKAIST------------------------------CLNLLI---------------- 177 (521)
Q Consensus 144 g~~~~a~~~~~~~~~~~~~~~~~~~~~~------------------------------ll~~~~---------------- 177 (521)
|+.++|.+.++++.......|...++.. ++..+.
T Consensus 261 G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (987)
T PRK09782 261 GEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLP 340 (987)
T ss_pred CCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 8888888888887643333232222110 012222
Q ss_pred -----------------------------------------------hcCCHHHHHHHHHHhhh-cCCCCCcHHHHHHHH
Q 009977 178 -----------------------------------------------ESNQVDLAQNFLKYSNQ-HLRLKPNTCIFNILI 209 (521)
Q Consensus 178 -----------------------------------------------~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~l~ 209 (521)
+.|+.++|.++++.... .....++.....-++
T Consensus 341 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 341 ANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred cchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 23444555555554433 111112333444555
Q ss_pred HHHHhcCC---hHHHHHH-------------------------HHHHHhCCCCCC--CHHHHHHHHHHHHhcCChHHHHH
Q 009977 210 KHHCKRGT---LESAFEV-------------------------LKEMKKSQMSYP--NLITYSTLIDGLCKNGRFREAIE 259 (521)
Q Consensus 210 ~~~~~~g~---~~~A~~~-------------------------~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 259 (521)
..|.+.+. ..++..+ +.......+ + +...|..+..++.. ++.++|+.
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p--~~~~~~a~~~LG~~l~~-~~~~eAi~ 497 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMS--PSYDAAAWNRLAKCYRD-TLPGVALY 497 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCC--CCCCHHHHHHHHHHHHh-CCcHHHHH
Confidence 55555544 2222111 111111111 3 56677778877776 78889999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009977 260 LFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFL 339 (521)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 339 (521)
.+.+.... .|+......+...+...|++++|...|+++... +|+...+..++..+.+.|++++|...++...+..
T Consensus 498 a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~ 572 (987)
T PRK09782 498 AWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG 572 (987)
T ss_pred HHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88888765 355554445555667899999999999998664 4555567778889999999999999999998753
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHH
Q 009977 340 LKPD-TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYR 418 (521)
Q Consensus 340 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 418 (521)
|+ ...+..+.......|++++|+..+++..+.. |+...+..+..++.+.|++++|...+++.....+. +...++
T Consensus 573 --P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~ 647 (987)
T PRK09782 573 --LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQA 647 (987)
T ss_pred --CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 33 3333344444556699999999999999874 46788999999999999999999999999998654 677888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHc
Q 009977 419 IVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES-DSWALLVELICR 496 (521)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 496 (521)
.+..++...|++++|+..++++++. .| +...+..+..++...|++++|...+++..+. .|+. .+.....+...+
T Consensus 648 nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~ 723 (987)
T PRK09782 648 ALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQ 723 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHH
Confidence 8999999999999999999999964 55 7788899999999999999999999999987 4555 666677888888
Q ss_pred cCcHHHHHHHHHHHHHcCccC
Q 009977 497 GRKLLFAFELLDELVIKESGT 517 (521)
Q Consensus 497 ~g~~~~A~~~~~~m~~~~~~~ 517 (521)
..+++.|.+-+++...-++.+
T Consensus 724 ~~~~~~a~~~~~r~~~~~~~~ 744 (987)
T PRK09782 724 RFNFRRLHEEVGRRWTFSFDS 744 (987)
T ss_pred HHHHHHHHHHHHHHhhcCccc
Confidence 999999999988887766554
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.90 E-value=4.3e-19 Score=169.41 Aligned_cols=451 Identities=12% Similarity=0.004 Sum_probs=272.8
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHH
Q 009977 59 FISHGAAISLIKCEKEPQCALEIFNTVSEQKGFN-HNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLM 137 (521)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (521)
++..+.|...+.-.|+++.+.++...+....... .-..+|..+..++...|++++|..+|.+..+.+.....-.+..+.
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Glg 349 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLG 349 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchh
Confidence 3444455555555566666666665554322100 012335556666666666666666666655443111123344566
Q ss_pred HHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcC----CHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHH
Q 009977 138 KHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESN----QVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHC 213 (521)
Q Consensus 138 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 213 (521)
..|...|+.+.+...|+++.. ..+.+..+...+...|...+ ..+.|..++.+..+. .+.|...|..+..++.
T Consensus 350 Qm~i~~~dle~s~~~fEkv~k--~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 350 QMYIKRGDLEESKFCFEKVLK--QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLE 425 (1018)
T ss_pred HHHHHhchHHHHHHHHHHHHH--hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHH
Confidence 666666666666666666642 22333344444444444443 345555555555432 2345556666655554
Q ss_pred hcCChHHHHHHHHHHH----hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CC------CCHHHHHHHH
Q 009977 214 KRGTLESAFEVLKEMK----KSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQ--IL------PDALTYNVLI 281 (521)
Q Consensus 214 ~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~------~~~~~~~~l~ 281 (521)
...-+.. +..|..+. ..+.. ......|.++..+...|++.+|...|......-. .. ++..+-..+.
T Consensus 426 ~~d~~~s-L~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 426 QTDPWAS-LDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred hcChHHH-HHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 4333322 44444322 22322 4555666666666666666666666666554300 01 1122233344
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 009977 282 DGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVD 361 (521)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 361 (521)
..+-..++.+.|.+.|..+.+.. +.-+..|..++.+....+...+|...+..+... ...++..+..+...+.....+.
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhc
Confidence 44445556666666666666543 323334444443444445666666666666553 2334556666666777777777
Q ss_pred HHHHHHHHHHHc-CCCCcHhHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCC
Q 009977 362 EALELLKEMKER-GCKADIVTFNIILGGLCR------------EGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKG 428 (521)
Q Consensus 362 ~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (521)
.|.+-|..+... ...+|.++...|...|.+ .+..+.|+++|.++++..+. |...-|.+...++..|
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKG 660 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhcc
Confidence 777766655543 223466666667765543 24577899999998887655 7788888888999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 009977 429 ELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVE-MGFKPESDSWALLVELICRGRKLLFAFELL 507 (521)
Q Consensus 429 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 507 (521)
++.+|..+|....+.. .-...+|..+..+|..+|++..|+++|+...+ ....-+..+...|.+++.+.|++.+|.+.+
T Consensus 661 ~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred CchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999998764 33556777899999999999999999998875 343456688899999999999999999999
Q ss_pred HHHHHcCccCcc
Q 009977 508 DELVIKESGTIQ 519 (521)
Q Consensus 508 ~~m~~~~~~~~~ 519 (521)
..++...|.+..
T Consensus 740 l~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 740 LKARHLAPSNTS 751 (1018)
T ss_pred HHHHHhCCccch
Confidence 998888777654
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=5.1e-18 Score=162.22 Aligned_cols=443 Identities=15% Similarity=0.084 Sum_probs=333.8
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHH
Q 009977 61 SHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHN--NATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMK 138 (521)
Q Consensus 61 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (521)
++-.+...|...|++++|..+|....+.. +| ...+..+++.+.+.|+.+.+...|+.+.... |....+...+..
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~---~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLKAD---NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccC---CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHh
Confidence 45667888999999999999999885442 33 4556778999999999999999999999875 666778878888
Q ss_pred HHHccC----cHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhh---cCCCCCcHHHHHHHHHH
Q 009977 139 HFSNCS----LHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQ---HLRLKPNTCIFNILIKH 211 (521)
Q Consensus 139 ~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~ 211 (521)
.|...+ ..++|..++.+.. ...+.+..+|..+...+....-+.. +..|..+.. ..+..+.+...|.++..
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~--~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVL--EQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHH--hcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 888775 5677888887776 3346677788887777665544333 666655431 22344778899999999
Q ss_pred HHhcCChHHHHHHHHHHHhCC-----CC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH-HHHHHHHH
Q 009977 212 HCKRGTLESAFEVLKEMKKSQ-----MS---YPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDA-LTYNVLID 282 (521)
Q Consensus 212 ~~~~g~~~~A~~~~~~~~~~~-----~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~ 282 (521)
+...|++++|...|+.....- .. .+++.+--.+...+-..++++.|.+.|..+.+.. |.. ..|..++.
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh---p~YId~ylRl~~ 538 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH---PGYIDAYLRLGC 538 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC---chhHHHHHHhhH
Confidence 999999999999999987651 10 0222234456777788899999999999999863 443 34445544
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHh-----
Q 009977 283 GFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLL-KPDTIGYTTLINCFCR----- 356 (521)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~----- 356 (521)
+....+...+|...++...+.. ..++.++..++..+.+...+..|.+-|..+.+... .+|..+.-.|...|.+
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 4455678899999999998865 66788888888899999999999997777665322 2466666666665543
Q ss_pred -------cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCC
Q 009977 357 -------AGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGE 429 (521)
Q Consensus 357 -------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (521)
.+..++|+++|.+.+...+. |..+-|.+.-.++..|++.+|..+|.++.+.... ...+|..+.++|..+|+
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHH
Confidence 24578899999999988765 7888889999999999999999999999987543 56789999999999999
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH------H----------
Q 009977 430 LEKAIELLRLMLCR-GFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLV------E---------- 492 (521)
Q Consensus 430 ~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~------~---------- 492 (521)
+..|+++|+...+. .-..+..+...|.+++.+.|.+.+|.+.+...+...+......|+..+ .
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~ 775 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTL 775 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccH
Confidence 99999999988865 334488999999999999999999999998877653222223333211 1
Q ss_pred --HHHccCcHHHHHHHHHHHHHcCcc
Q 009977 493 --LICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 493 --~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
.....+..+.|.++|..|...++-
T Consensus 776 eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 776 EEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 112246677888999998877654
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=6.3e-17 Score=161.56 Aligned_cols=413 Identities=10% Similarity=0.055 Sum_probs=307.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHcc
Q 009977 64 AAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNC 143 (521)
Q Consensus 64 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (521)
.++..+...|+.++|+.+++++. . .-+........++..+...|++++|.++|+++.+.. |.++..+..++..|...
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~-~-p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ-S-SMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc-c-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhc
Confidence 67788888899999999999986 2 112334444444678888999999999999999986 55677888889999999
Q ss_pred CcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHH
Q 009977 144 SLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFE 223 (521)
Q Consensus 144 g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 223 (521)
++.++|++.++++.. ..|+...+..++..+...++..+|+..++++++. .+.+...+..+..++.+.|-...|.+
T Consensus 150 ~q~~eAl~~l~~l~~---~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~ 224 (822)
T PRK14574 150 GRGGVVLKQATELAE---RDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALR 224 (822)
T ss_pred CCHHHHHHHHHHhcc---cCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 999999999999964 3555555555555555567776799999999863 34567788999999999999999998
Q ss_pred HHHHHHhCCCCCCCHHHH--HHHHHHHHh---------cCC---hHHHHHHHHHHHhcCCCCCCH-----HHHHHHHHHH
Q 009977 224 VLKEMKKSQMSYPNLITY--STLIDGLCK---------NGR---FREAIELFEEMVSKDQILPDA-----LTYNVLIDGF 284 (521)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~--~~l~~~~~~---------~g~---~~~A~~~~~~~~~~~~~~~~~-----~~~~~l~~~~ 284 (521)
+..+-...-- +....+ ...+.-.++ ..+ .+.|+.-++.+...-+..|.. ....-.+-++
T Consensus 225 l~~~~p~~f~--~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL 302 (822)
T PRK14574 225 LAKENPNLVS--AEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGAL 302 (822)
T ss_pred HHHhCccccC--HHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHH
Confidence 8776432111 111111 001111111 122 345666666666532222322 2223455677
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCC
Q 009977 285 CRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLL-----KPDTIGYTTLINCFCRAGR 359 (521)
Q Consensus 285 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~ 359 (521)
...|++.++++.|+.+...+.+....+-..++.+|...++.++|+.+++.+..... .++......|.-+|...++
T Consensus 303 ~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~ 382 (822)
T PRK14574 303 LVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQ 382 (822)
T ss_pred HHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhccc
Confidence 88999999999999999988666667888999999999999999999999866431 2234445778899999999
Q ss_pred HHHHHHHHHHHHHcCC-------------CCcH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 009977 360 VDEALELLKEMKERGC-------------KADI-VTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSC 425 (521)
Q Consensus 360 ~~~A~~~~~~~~~~~~-------------~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (521)
+++|..+++.+.+..+ .||- ..+..++..+...|++.+|++.++++....+. |......+...+.
T Consensus 383 ~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~ 461 (822)
T PRK14574 383 LDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYL 461 (822)
T ss_pred HHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 9999999999987422 1222 23345677788999999999999999887655 8889999999999
Q ss_pred cCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009977 426 QKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLV 491 (521)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 491 (521)
..|.+.+|++.++.+.. +.| +..+....+.++...|++++|..+.+.+.+. .|+......|-
T Consensus 462 ~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l~ 524 (822)
T PRK14574 462 ARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQELD 524 (822)
T ss_pred hcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHHH
Confidence 99999999999977773 466 6677778888899999999999999998876 46665444443
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=3.6e-16 Score=137.41 Aligned_cols=442 Identities=16% Similarity=0.134 Sum_probs=260.3
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHH----HHHHHHHHH
Q 009977 66 ISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGI----FLNLMKHFS 141 (521)
Q Consensus 66 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~ 141 (521)
..-|..+....+|+..++-+.+..-|+.....--.+...+.+.+++.+|++.|+..+.+-...+..+ +..+.-.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 3345566778889888888765544544444444567788889999999999988876643333333 344555678
Q ss_pred ccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-----------CCcHHHHHHH--
Q 009977 142 NCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRL-----------KPNTCIFNIL-- 208 (521)
Q Consensus 142 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~l-- 208 (521)
+.|++++|+..|+...+ ..|+..+-..++-++...|+.++..+.|.+++.-.+. .|+....+..
T Consensus 288 q~gqy~dainsfdh~m~---~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCME---EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred ecccchhhHhhHHHHHH---hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 89999999999999853 4788888777888888899999999999988753321 2333333322
Q ss_pred ---HHHHHhcCCh--HHHHHHHHHHHhCCCCCCCHHH---H------------------HHHHHHHHhcCChHHHHHHHH
Q 009977 209 ---IKHHCKRGTL--ESAFEVLKEMKKSQMSYPNLIT---Y------------------STLIDGLCKNGRFREAIELFE 262 (521)
Q Consensus 209 ---~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~---~------------------~~l~~~~~~~g~~~~A~~~~~ 262 (521)
+.-.-+.+.- ++++-.--++..--+. |+-.. | ..-..-+.++|+++.|+++++
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~-~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIA-PDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccc-cchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 2222222221 2222111122211111 22100 1 111334778999999999998
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 009977 263 EMVSKDQILPDALTYNVLIDGFCR-GGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK 341 (521)
Q Consensus 263 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 341 (521)
-+.+++.-..+...-|.-+--|.+ ..++..|.++-+..+... .-+......-.......|++++|.+.+++.......
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 887664332222222222222222 235667777666666543 334444444444555667777777777777653211
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 009977 342 PDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVL 421 (521)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 421 (521)
- ......+.-.+-..|++++|++.|-.+...-. .+...+..+...|-...+...|++++.+.... +..|+..+.-|.
T Consensus 523 c-~ealfniglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~ 599 (840)
T KOG2003|consen 523 C-TEALFNIGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLA 599 (840)
T ss_pred H-HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHH
Confidence 1 11111222235566777777777766543211 14555666666676667777777776665544 333566677777
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCcH
Q 009977 422 NFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVE-LICRGRKL 500 (521)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~ 500 (521)
..|-+.|+-..|.+.+-+--.. ++.+..+...|..-|....-+++++.+|++..-. +|+..-|..++. ++.+.|++
T Consensus 600 dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaali--qp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHhcccH
Confidence 7777777777776665444321 3336666666666666666667777777665432 577766765553 33456777
Q ss_pred HHHHHHHHHHHHcCccCc
Q 009977 501 LFAFELLDELVIKESGTI 518 (521)
Q Consensus 501 ~~A~~~~~~m~~~~~~~~ 518 (521)
.+|+++++..-.+-|.++
T Consensus 677 qka~d~yk~~hrkfpedl 694 (840)
T KOG2003|consen 677 QKAFDLYKDIHRKFPEDL 694 (840)
T ss_pred HHHHHHHHHHHHhCccch
Confidence 777777777766665543
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.80 E-value=5.1e-15 Score=141.04 Aligned_cols=368 Identities=15% Similarity=0.121 Sum_probs=259.4
Q ss_pred HHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCC
Q 009977 102 LDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQ 181 (521)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 181 (521)
...+...|++++|..++.++++.. +....+|..|...|-+.|+.++++..+-..- .-.+.|...|..+.....+.|.
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHhccc
Confidence 334455588899999998888876 6677888888888988898888888765554 2345566788888888888888
Q ss_pred HHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHhcCChHHH
Q 009977 182 VDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITY----STLIDGLCKNGRFREA 257 (521)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A 257 (521)
++.|.-.|.++++. .+++...+-.-+..|-+.|+...|.+.|.++....++ .|..-. -.++..+...++-+.|
T Consensus 223 i~qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~-~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 223 INQARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP-VDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred HHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999888888763 4456666666778888889999999988888877652 232222 2345566677777888
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------------------------CCCCcc
Q 009977 258 IELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG---------------------------CNPNVF 310 (521)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~ 310 (521)
++.++......+-..+...++.++..+.+...++.|......+.... ..++..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 88888887754445556677888888888888888888877776511 112222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 009977 311 NYTTLMNGFCKEGKLQEAKEVFDEMKNFL--LKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGG 388 (521)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (521)
+ ..++-++...+..+....+........ +.-+...|.-+..+|...|++.+|+.+|..+.....--+...|..+..+
T Consensus 380 v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 V-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred h-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 2 123333444444444444444444433 3334677888888899999999999999988876544467788888889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHH
Q 009977 389 LCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLML--------CRGFLPHYATSNELLVRLC 460 (521)
Q Consensus 389 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~p~~~~~~~l~~~~~ 460 (521)
|...|.+++|.+.+++++...+. +...-..|...+.+.|+.++|.+.+..+. ..+..|+........+.+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 99999999999999988876432 44555667777888899999998888854 1234455555566667778
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009977 461 KAGMAEDAAIALFGLVE 477 (521)
Q Consensus 461 ~~g~~~~a~~~~~~~~~ 477 (521)
..|+.++-......|+.
T Consensus 538 ~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVD 554 (895)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 88888776555555543
No 29
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.7e-13 Score=121.47 Aligned_cols=419 Identities=10% Similarity=0.053 Sum_probs=249.6
Q ss_pred CCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHH
Q 009977 58 RFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLM 137 (521)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (521)
+...|-.....-..+++.+.|.++|++++... ..+...|...+.+=.+......|..+++..+.. .|.-...|...+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHH
Confidence 34456666666667788888888888886443 456667777777777778888888888877765 244445666666
Q ss_pred HHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCC
Q 009977 138 KHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGT 217 (521)
Q Consensus 138 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 217 (521)
.+--..|+..-|.++|++.. .-.|+..+|.+.++.-.+.+.++.|..+++..+ -+.|++..|...++.-.++|+
T Consensus 149 ymEE~LgNi~gaRqiferW~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV---~~HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFV---LVHPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHhcccHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh---eecccHHHHHHHHHHHHhcCc
Confidence 66666777777777777764 347777777777777777777777777777765 355777777777777777777
Q ss_pred hHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----------------------------
Q 009977 218 LESAFEVLKEMKKSQM-SYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKD---------------------------- 268 (521)
Q Consensus 218 ~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------------------- 268 (521)
...|..+|....+.-. ...+...+.+...--..+..++.|.-+|+-.++.-
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 7777777776554321 01122223333332233344444444444443320
Q ss_pred --------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcc--hHHHH----HH----HHHhcCC
Q 009977 269 --------------QILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVF--NYTTL----MN----GFCKEGK 324 (521)
Q Consensus 269 --------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l----~~----~~~~~~~ 324 (521)
..+.|-.+|-..+..-...|+.+...++|++++..- +|-.. .|... ++ .-....+
T Consensus 303 Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed 381 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAED 381 (677)
T ss_pred HhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 113344455555555555666666666666666542 33211 01100 11 1123456
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 009977 325 LQEAKEVFDEMKNFLLKPDTIGYTT----LINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALG 400 (521)
Q Consensus 325 ~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 400 (521)
.+.+.++++...+. ++....++.- ......++.++..|.+++...+. .-|-..+|...|..-.+.++++.+..
T Consensus 382 ~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 382 VERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred HHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 66666666666552 2222333332 22333456666777776666553 34566667777777777777777777
Q ss_pred HHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009977 401 MLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRG-FLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMG 479 (521)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 479 (521)
++++.++-++. +..+|......-...|+.+.|..+|.-++... ++.....|.+.|+.-...|.++.|..+++++++.
T Consensus 459 LYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r- 536 (677)
T KOG1915|consen 459 LYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR- 536 (677)
T ss_pred HHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh-
Confidence 77777776554 56666666666666777777777777776432 1223344555555556677777777777777765
Q ss_pred CCCCHHHHHHHHH
Q 009977 480 FKPESDSWALLVE 492 (521)
Q Consensus 480 ~~~~~~~~~~l~~ 492 (521)
.+...+|..++.
T Consensus 537 -t~h~kvWisFA~ 548 (677)
T KOG1915|consen 537 -TQHVKVWISFAK 548 (677)
T ss_pred -cccchHHHhHHH
Confidence 244445555543
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.79 E-value=1.8e-13 Score=125.95 Aligned_cols=433 Identities=11% Similarity=0.024 Sum_probs=246.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhh----hccCCcCHHHHHHHHHH
Q 009977 64 AAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMT----YETCKFHEGIFLNLMKH 139 (521)
Q Consensus 64 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~ 139 (521)
-|-.+|.+..-|+.|..+++++. . .++.+...|.+-...=-..|+.+...+++++-+ ..|+..+...|..=...
T Consensus 411 dLwlAlarLetYenAkkvLNkaR-e-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~ 488 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAR-E-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEA 488 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-h-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHH
Confidence 34455566666677777777662 2 356666666666655556666666666654432 22444444444444444
Q ss_pred HHccCcHHHHHHHHHhhcccc-----------------------------------CCCCCHhHHHHHHHHHHhcCCHHH
Q 009977 140 FSNCSLHERVLEMFHKIHPIT-----------------------------------REKPSLKAISTCLNLLIESNQVDL 184 (521)
Q Consensus 140 ~~~~g~~~~a~~~~~~~~~~~-----------------------------------~~~~~~~~~~~ll~~~~~~~~~~~ 184 (521)
+-..|..--+..+...+...+ ..+.+...|......--..|..++
T Consensus 489 ~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 489 CEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred HhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHH
Confidence 444444444444333332211 112222233333333334455555
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009977 185 AQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEM 264 (521)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 264 (521)
...+++++.. ..+.....|...+..+...|+...|..++....+..+ .+...|..-+.....+.+++.|..+|.+.
T Consensus 569 l~Allqkav~--~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p--nseeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 569 LEALLQKAVE--QCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP--NSEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred HHHHHHHHHH--hCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC--CcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 5555555543 2333444555555555566666666666666665554 35555666666666666666666666665
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 009977 265 VSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDT 344 (521)
Q Consensus 265 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 344 (521)
... .|+...|..-+...--.++.++|++++++.++. ++.-...|..+.+.+-+.++.+.|.+.|..-.+. +...+
T Consensus 645 r~~---sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~i 719 (913)
T KOG0495|consen 645 RSI---SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSI 719 (913)
T ss_pred hcc---CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCc
Confidence 432 344555544444444456666666666665554 1223345555566666666666666665544331 22234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHH
Q 009977 345 IGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFS 424 (521)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (521)
..|-.+...--+.|.+-.|..++++..-.++. +...|...+..-.+.|..+.|..+..++++.- +-+...|..-|...
T Consensus 720 pLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-p~sg~LWaEaI~le 797 (913)
T KOG0495|consen 720 PLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQEC-PSSGLLWAEAIWLE 797 (913)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccchhHHHHHHhc
Confidence 45555555555566666666666666655544 55666666666666666666666666665542 22444555555554
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHH
Q 009977 425 CQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES-DSWALLVELICRGRKLLFA 503 (521)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A 503 (521)
.+.++-......+++ ..-|+.++..+...+....+++.|...|.+.++.+ ||. .+|..+...+.++|.-++-
T Consensus 798 ~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa~fykfel~hG~eed~ 870 (913)
T KOG0495|consen 798 PRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWAWFYKFELRHGTEEDQ 870 (913)
T ss_pred cCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHHHHHHHHHHHhCCHHHH
Confidence 444443333332222 34466667777888888888999999999888764 444 8888888888899988888
Q ss_pred HHHHHHHHHcCcc
Q 009977 504 FELLDELVIKESG 516 (521)
Q Consensus 504 ~~~~~~m~~~~~~ 516 (521)
.+++++.....|.
T Consensus 871 kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 871 KEVLKKCETAEPT 883 (913)
T ss_pred HHHHHHHhccCCC
Confidence 8888888776553
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.79 E-value=5.5e-14 Score=134.19 Aligned_cols=330 Identities=14% Similarity=0.102 Sum_probs=191.3
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHH
Q 009977 68 LIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHE 147 (521)
Q Consensus 68 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 147 (521)
.+...|+.++|.+++.+++++. +.+...|.+|..+|-..|+.+++...+-.....+ |-+...|..+.....+.|.++
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 3445588888888888887775 5667778888888888888887777666555544 556677777888888888888
Q ss_pred HHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHH----HHHHHHHHHHhcCChHHHHH
Q 009977 148 RVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTC----IFNILIKHHCKRGTLESAFE 223 (521)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~ 223 (521)
+|.-.|.+.. ...+++...+..-...|-+.|+...|..-+.++.+..+ +.|.. .--..++.+...++-+.|.+
T Consensus 225 qA~~cy~rAI--~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 225 QARYCYSRAI--QANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHH--hcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888776 33455566666667777788888888877777765311 11222 22233555666677777777
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--------------------------CCCCCHHHH
Q 009977 224 VLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKD--------------------------QILPDALTY 277 (521)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------------------~~~~~~~~~ 277 (521)
.++.....+....+...++.++..+.+...++.|........... +..++...
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v- 380 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV- 380 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-
Confidence 777766633333455566677777777777777777666655410 01111111
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009977 278 NVLIDGFCRGGKVDRAKKIMEFMKNNG--CNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFC 355 (521)
Q Consensus 278 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 355 (521)
..++-++.+....+....+.....+.. ..-+...|.-+..+|...|.+..|+.+|..+......-+...|-.+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 011122222333333333333333333 222334455555555555666666665555554333333455555555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 356 RAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKL 405 (521)
Q Consensus 356 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 405 (521)
..|.+++|...|+..+...+. +...-..|...+.+.|+.++|.+.++.+
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 555566666555555554322 3333444445555555555555555553
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.78 E-value=2.1e-13 Score=125.60 Aligned_cols=429 Identities=13% Similarity=0.047 Sum_probs=321.3
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHH
Q 009977 71 CEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVL 150 (521)
Q Consensus 71 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 150 (521)
..-+++.|+.++.++.+-. +.+...|. +|++...++.|..++++..+. +|-+..+|......--.+|..+.+.
T Consensus 388 elE~~~darilL~rAvecc--p~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC--PQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred hccChHHHHHHHHHHHHhc--cchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHH
Confidence 3456677999999986543 44444444 556677889999999999875 6888899999888888999999998
Q ss_pred HHHHhhcc---ccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC--cHHHHHHHHHHHHhcCChHHHHHHH
Q 009977 151 EMFHKIHP---ITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKP--NTCIFNILIKHHCKRGTLESAFEVL 225 (521)
Q Consensus 151 ~~~~~~~~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~ 225 (521)
+++.+-.. ..+...+...|..=...|-..|..-.+..+....+.- |+.. -..+|+.-...|.+.+.++-|..+|
T Consensus 461 kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi-gvEeed~~~tw~~da~~~~k~~~~~carAVy 539 (913)
T KOG0495|consen 461 KIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI-GVEEEDRKSTWLDDAQSCEKRPAIECARAVY 539 (913)
T ss_pred HHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh-ccccchhHhHHhhhHHHHHhcchHHHHHHHH
Confidence 88776421 1445667777777777888888888888888777632 3332 2458888889999999999999999
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 009977 226 KEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGC 305 (521)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 305 (521)
....+..+ .+...|......--..|..++-..+|+++... .+-....|.....-+-..|+...|..++.++.+..
T Consensus 540 a~alqvfp--~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~- 614 (913)
T KOG0495|consen 540 AHALQVFP--CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN- 614 (913)
T ss_pred HHHHhhcc--chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-
Confidence 98888766 46677877777777788888888899888875 34555666666777777899999999998888875
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHH
Q 009977 306 NPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNII 385 (521)
Q Consensus 306 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 385 (521)
+.+...|..-+...+...+++.|..+|.+... ..|+...|.--+...--.++.++|++++++.++.-+. -...|..+
T Consensus 615 pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lml 691 (913)
T KOG0495|consen 615 PNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLML 691 (913)
T ss_pred CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHH
Confidence 55777888888888888899999999988776 4566777766666666678889999988888876322 34567778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 009977 386 LGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMA 465 (521)
Q Consensus 386 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 465 (521)
.+.+-+.++.+.|.+.|..-.+. .+-.+..|..+...--+.|.+-+|..++++..-++ +-+...|...+++-.+.|..
T Consensus 692 GQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 692 GQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNK 769 (913)
T ss_pred hHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCH
Confidence 88888888888888877665554 22245567777777777788888888888877542 23677778888888888888
Q ss_pred HHHHHHHHHHHHC----C-------------------------CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 466 EDAAIALFGLVEM----G-------------------------FKPESDSWALLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 466 ~~a~~~~~~~~~~----~-------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
+.|..+..++++. | ...|..+...+...+....++++|++.|++.+..+|+
T Consensus 770 ~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 770 EQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred HHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 8887777665531 1 0234455666777888889999999999999998876
Q ss_pred C
Q 009977 517 T 517 (521)
Q Consensus 517 ~ 517 (521)
.
T Consensus 850 ~ 850 (913)
T KOG0495|consen 850 N 850 (913)
T ss_pred c
Confidence 3
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=4.2e-13 Score=119.02 Aligned_cols=408 Identities=11% Similarity=0.063 Sum_probs=271.6
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCH-hHHH
Q 009977 92 NHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSL-KAIS 170 (521)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ 170 (521)
..+...|-...+.=..++++..|..+|+..+.-+ ..+...|...+.+-.++.....|..++++... .-|-. ..|-
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt---~lPRVdqlWy 145 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVT---ILPRVDQLWY 145 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHH---hcchHHHHHH
Confidence 3466778888888888899999999999999776 45666788888888889999999999998753 23332 3444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 009977 171 TCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCK 250 (521)
Q Consensus 171 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (521)
-.+..--..|++..|.++|+.-+ ...|+..+|++.+..-.+.+.++.|..++++..-. +|++.+|......-.+
T Consensus 146 KY~ymEE~LgNi~gaRqiferW~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~---HP~v~~wikyarFE~k 219 (677)
T KOG1915|consen 146 KYIYMEEMLGNIAGARQIFERWM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV---HPKVSNWIKYARFEEK 219 (677)
T ss_pred HHHHHHHHhcccHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---cccHHHHHHHHHHHHh
Confidence 45555566899999999999887 58899999999999999999999999999998754 3899999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------------------------
Q 009977 251 NGRFREAIELFEEMVSKDQI-LPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG------------------------- 304 (521)
Q Consensus 251 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------- 304 (521)
.|+...|..+|+.+.+.-+. .-+...+.+....-.++..++.|.-+|+-.++.-
T Consensus 220 ~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gI 299 (677)
T KOG1915|consen 220 HGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGI 299 (677)
T ss_pred cCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhh
Confidence 99999999999988775321 1122334444443344555666665555544431
Q ss_pred ------------------CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHH--------HHh
Q 009977 305 ------------------CNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD--TIGYTTLINC--------FCR 356 (521)
Q Consensus 305 ------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~--------~~~ 356 (521)
-+.|-.+|...+..-...|+.+...++|+++... ++|- ...|.-.+-. -..
T Consensus 300 Ed~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle 378 (677)
T KOG1915|consen 300 EDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELE 378 (677)
T ss_pred HHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234445555555555666777777777666652 2331 1122211111 123
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHhHHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHH
Q 009977 357 AGRVDEALELLKEMKERGCKADIVTFNII----LGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEK 432 (521)
Q Consensus 357 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 432 (521)
..+.+.+.++++..++. ++....||..+ ..-..++.++..|.+++-.+. |..|-..+|...|..-.+.++++.
T Consensus 379 ~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDR 455 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDR 455 (677)
T ss_pred hhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHH
Confidence 56666677777666653 11123333332 233345566677777666554 445666777777777777777777
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 009977 433 AIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGF-KPESDSWALLVELICRGRKLLFAFELLDEL 510 (521)
Q Consensus 433 a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 510 (521)
+..++++.++. .| +-.+|......-...|+.+.|..+|+-+++... .-....|...|+.-...|.++.|..+++++
T Consensus 456 cRkLYEkfle~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 456 CRKLYEKFLEF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHHHHHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 77777777753 44 556666666666677777777777776665321 111234555555556677777777777777
Q ss_pred HHcCc
Q 009977 511 VIKES 515 (521)
Q Consensus 511 ~~~~~ 515 (521)
++...
T Consensus 534 L~rt~ 538 (677)
T KOG1915|consen 534 LDRTQ 538 (677)
T ss_pred HHhcc
Confidence 76543
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=6.2e-15 Score=129.74 Aligned_cols=421 Identities=15% Similarity=0.089 Sum_probs=291.9
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCC-CCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHc
Q 009977 66 ISLIKCEKEPQCALEIFNTVSEQK-GFNHN--NATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSN 142 (521)
Q Consensus 66 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (521)
...+.+..++.+|++++.-++.+- .+..+ ....+.+...+.+.|+++.|..-|+...+.. |+-.+-..|+-++.-
T Consensus 244 gni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~ 321 (840)
T KOG2003|consen 244 GNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFA 321 (840)
T ss_pred cceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhhee
Confidence 345667778999999999876542 12222 2345566667889999999999999998774 676777778888888
Q ss_pred cCcHHHHHHHHHhhccccCC-----------CCCHhHHHHHH-----HHHHhcCC--HHHHHHHHHHhhhcCCCCCcHH-
Q 009977 143 CSLHERVLEMFHKIHPITRE-----------KPSLKAISTCL-----NLLIESNQ--VDLAQNFLKYSNQHLRLKPNTC- 203 (521)
Q Consensus 143 ~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~ll-----~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~- 203 (521)
.|+.++..+.|.++....+. .|+...++..+ +-+.+.++ .+++.-.--+++ ..-+.|+..
T Consensus 322 i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kii-apvi~~~fa~ 400 (840)
T KOG2003|consen 322 IGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKII-APVIAPDFAA 400 (840)
T ss_pred cCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHh-ccccccchhc
Confidence 89999999999988643221 23333333322 22222221 122221111111 112233211
Q ss_pred ------------HH--------HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCChHHHHHHH
Q 009977 204 ------------IF--------NILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCK--NGRFREAIELF 261 (521)
Q Consensus 204 ------------~~--------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~ 261 (521)
.+ ..-...|.+.|+++.|.++++-..+.... .....-+.|-..+.. -.++..|.++-
T Consensus 401 g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk-~~saaa~nl~~l~flqggk~~~~aqqya 479 (840)
T KOG2003|consen 401 GCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNK-TASAAANNLCALRFLQGGKDFADAQQYA 479 (840)
T ss_pred ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccch-hhHHHhhhhHHHHHHhcccchhHHHHHH
Confidence 00 11233577899999999999988776543 222223333333322 34688888888
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 009977 262 EEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK 341 (521)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 341 (521)
+..+..+ .-+......-.+.....|++++|.+.|++.+... ..-......+.-.+-..|++++|++.|-++... +.
T Consensus 480 d~aln~d--ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd-asc~ealfniglt~e~~~~ldeald~f~klh~i-l~ 555 (840)
T KOG2003|consen 480 DIALNID--RYNAAALTNKGNIAFANGDLDKAAEFYKEALNND-ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LL 555 (840)
T ss_pred HHHhccc--ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc-hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HH
Confidence 7776654 2344444444455566899999999999998764 223334445566678899999999999876542 23
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 009977 342 PDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVL 421 (521)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 421 (521)
.+......+...|-...+..+|++++.+.... ++.|+..+..|...|-+.|+-..|++.+-.--+. +.-+..+...|.
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ 633 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLA 633 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHH
Confidence 46777778888999999999999999887655 3447888999999999999999999887665443 344788888999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc
Q 009977 422 NFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRL-CKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRK 499 (521)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 499 (521)
..|....-+++++.+|+++. -+.|+..-|..++..| .+.|+++.|..+|++.... ++.+..++.-|++.+...|-
T Consensus 634 ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 99999999999999999987 4799999998887765 5789999999999988753 46778899989888776654
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=4.2e-13 Score=117.50 Aligned_cols=325 Identities=15% Similarity=0.206 Sum_probs=145.6
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH--HhcCCchHH-HHHHHHhhhccCCcCHHHHHH
Q 009977 59 FISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKL--ARYKKFEAV-DAVLRQMTYETCKFHEGIFLN 135 (521)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~ 135 (521)
+++-|.++... .++..+++.-+++.| ++.|.+-+...-..|+..- ....++.-| ++.|-.|...| ..+..+|
T Consensus 116 V~~E~nL~kmI-S~~EvKDs~ilY~~m-~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREVKDSCILYERM-RSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hcchhHHHHHH-hhcccchhHHHHHHH-HhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 44566666653 456777788888887 5556666665554554432 222222222 22333333322 1111111
Q ss_pred HHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhc
Q 009977 136 LMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKR 215 (521)
Q Consensus 136 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (521)
+.|+..+ -+|+.. +.+..++..+|.++++.-..+.|.+++++.... ..+.+..++|.+|.+-.-
T Consensus 191 ------K~G~vAd--L~~E~~------PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~- 254 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETL------PKTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSY- 254 (625)
T ss_pred ------ccccHHH--HHHhhc------CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHh-
Confidence 1222222 112111 333445555555555555555555555544322 334445555555443321
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH----HHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHH
Q 009977 216 GTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREA----IELFEEMVSKDQILPDALTYNVLIDGFCRGGKVD 291 (521)
Q Consensus 216 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 291 (521)
..-.++..+|...... ||..|+|+++.+..+.|+++.| .+++.+|.+. |+.|...+|..+|..+++-++..
T Consensus 255 ---~~~K~Lv~EMisqkm~-Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKei-GVePsLsSyh~iik~f~re~dp~ 329 (625)
T KOG4422|consen 255 ---SVGKKLVAEMISQKMT-PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEI-GVEPSLSSYHLIIKNFKRESDPQ 329 (625)
T ss_pred ---hccHHHHHHHHHhhcC-CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh-CCCcchhhHHHHHHHhcccCCch
Confidence 1114445555544443 5555555555555555544432 3334444443 45555555555555555544442
Q ss_pred H-HHHHHHHHHH----cCC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHH
Q 009977 292 R-AKKIMEFMKN----NGC----NPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFL----LKPD---TIGYTTLINCFC 355 (521)
Q Consensus 292 ~-a~~~~~~~~~----~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~~~ 355 (521)
+ +..++..+.. +.+ +.+...|...+..|.+..+.+-|.++..-..... +.|+ ..-|..+....+
T Consensus 330 k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~lic 409 (625)
T KOG4422|consen 330 KVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLIC 409 (625)
T ss_pred hhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHH
Confidence 2 2222222221 111 1122233344445555555555555444332210 1111 122334444445
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009977 356 RAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDG 409 (521)
Q Consensus 356 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 409 (521)
+....+.-+..|+.|.-.-+.|+..+...++++....|.++-.-+++..+...|
T Consensus 410 q~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 410 QMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 555555555555555544444555555555555555555554444444444433
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.3e-13 Score=121.86 Aligned_cols=366 Identities=13% Similarity=0.034 Sum_probs=207.8
Q ss_pred CcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC--cHHH
Q 009977 127 KFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKP--NTCI 204 (521)
Q Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 204 (521)
..|...+......+.+.|....|++.|.... ...+..+.+|..+.... -+.+.+..+.. +.+. ....
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v--~~~P~~W~AWleL~~li---t~~e~~~~l~~------~l~~~~h~M~ 229 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVV--NRYPWFWSAWLELSELI---TDIEILSILVV------GLPSDMHWMK 229 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHH--hcCCcchHHHHHHHHhh---chHHHHHHHHh------cCcccchHHH
Confidence 3444444455555666777777777776654 22344444444443322 22222222221 1121 1222
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-CHHHHHHHHHH
Q 009977 205 FNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILP-DALTYNVLIDG 283 (521)
Q Consensus 205 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~ 283 (521)
--.+..++-...+.++++.-.......|.+ .+...-+....+.....++++|+..|+++.+.++... |..+|..++-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~-~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY- 307 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFP-NSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY- 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC-ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH-
Confidence 223445555555667777666666666653 3333334444455566677777777777766543222 3445555542
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009977 284 FCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEA 363 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 363 (521)
.+..+..-+ -+-....+.+ +-.+.|...+++.|.-.++.++|...|++..+.+.. ....|+.+..-|....+...|
T Consensus 308 -v~~~~skLs-~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 308 -VKNDKSKLS-YLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred -HHhhhHHHH-HHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHH
Confidence 222221111 1111111111 334456666677777777777777777777764322 356677777777777777777
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 009977 364 LELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCR 443 (521)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (521)
++-++...+..+. |-..|-.+.++|.-.+...-|+-+|+++....+. |...|..|..+|.+.++.++|++.|..+...
T Consensus 384 i~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 384 IESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 7777777776544 6667777777777777777777777777665433 6677777777777777777777777777754
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 009977 444 GFLPHYATSNELLVRLCKAGMAEDAAIALFGLVE----MG-FKP-ESDSWALLVELICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 444 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 512 (521)
| +.+...+..|...|.+.++..+|...|++.++ .| +.| ......-|..-+.+.+++++|..+......
T Consensus 462 ~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 462 G-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred c-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 3 33556667777777777777777777766554 12 122 112233344555667777776665554443
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.5e-13 Score=121.46 Aligned_cols=367 Identities=11% Similarity=0.034 Sum_probs=259.3
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHH
Q 009977 92 NHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAIST 171 (521)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 171 (521)
..|...+......+.+.|....|...|...... .|....+|..|...... .+.+..+...+. .......=..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit~---~e~~~~l~~~l~----~~~h~M~~~F 232 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELITD---IEILSILVVGLP----SDMHWMKKFF 232 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhch---HHHHHHHHhcCc----ccchHHHHHH
Confidence 345555555555666778888888888777765 35667777766665433 222222211111 0111112223
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHh
Q 009977 172 CLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMS-YPNLITYSTLIDGLCK 250 (521)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 250 (521)
+..++....+.+++..-.+.+... |++-+...-+..+.+.....++|+|+.+|+++.+..|- ..|..+|..++ |.+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~ 309 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHH
Confidence 456666677888888777766543 66666666666677778889999999999999987652 23667787777 444
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 009977 251 NGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKE 330 (521)
Q Consensus 251 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 330 (521)
+.+..-+. +-+.....+...| .|+..+.+.|.-.++.++|...|++.++.+ +....+|+.++.-|....+...|.+
T Consensus 310 ~~~skLs~-LA~~v~~idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 310 NDKSKLSY-LAQNVSNIDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhhHHHHH-HHHHHHHhccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 33322211 1122222333444 578888898999999999999999999886 5667789999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009977 331 VFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGI 410 (521)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 410 (521)
-++.+.+.. +.|-..|-.+.++|.-.+.+.-|+-+|++.....+. |...|.+|...|.+.++.++|++.|......|-
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 999998854 347889999999999999999999999999887554 888999999999999999999999999988754
Q ss_pred ccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 411 YLNKASYRIVLNFSCQKGELEKAIELLRLMLCR----G-FLP-HYATSNELLVRLCKAGMAEDAAIALFGLV 476 (521)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 476 (521)
. +...+..|...|-+.++..+|...|++-++. | +.| ......-|..-+.+.+++++|..+.....
T Consensus 464 t-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 464 T-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred c-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 3 6678999999999999999999999887752 2 223 22222335556677888888777655444
No 38
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.76 E-value=1.5e-14 Score=121.86 Aligned_cols=291 Identities=16% Similarity=0.147 Sum_probs=223.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhCCCHHH
Q 009977 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD--ALTYNVLIDGFCRGGKVDR 292 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ 292 (521)
.++.++|.+.|-+|.+..+ .+..+..+|++.|-+.|..+.|+++.+.+.+..+.+-+ ......|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~--~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP--ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcCc--hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 5788999999999998665 56677788999999999999999999988876433222 2344566777888999999
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 009977 293 AKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD----TIGYTTLINCFCRAGRVDEALELLK 368 (521)
Q Consensus 293 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~ 368 (521)
|+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+. ...|..+...+....+++.|..+++
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999998866 45566788899999999999999999998887665544 2446667777777889999999999
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 009977 369 EMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPH 448 (521)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 448 (521)
+..+.+.+ ...+--.+...+...|+++.|.+.++.+.+.++.--+.+...|..+|.+.|+.++....+.++.+. .+.
T Consensus 205 kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g 281 (389)
T COG2956 205 KALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTG 281 (389)
T ss_pred HHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCC
Confidence 99887654 555666788889999999999999999999877666778888999999999999999999999865 333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCcHHHHHHHHHHHHHc
Q 009977 449 YATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICR---GRKLLFAFELLDELVIK 513 (521)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~ 513 (521)
...-..+...-....-.+.|...+.+-+.. .|+...+..+++.-.. .|...+....++.|+..
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 344444444444444456666666555544 6999888888876553 45677778888887753
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=8.5e-18 Score=151.14 Aligned_cols=260 Identities=12% Similarity=0.112 Sum_probs=66.2
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCc
Q 009977 66 ISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSL 145 (521)
Q Consensus 66 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (521)
...+.+.|++++|+++++........+.|...|..+.......++++.|.+.++++...+ +.+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 445556666666666664432221112334444445555555666666666666666554 2234444445544 45566
Q ss_pred HHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHH
Q 009977 146 HERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVL 225 (521)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 225 (521)
+++|.++++...+ ..+++..+..++..+...++++++..+++.+......+.+...|..++..+.+.|+.++|++.+
T Consensus 93 ~~~A~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYE---RDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccc---cccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666554421 1233344444555555555555555555554433223344445555555555555555555555
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 009977 226 KEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGC 305 (521)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 305 (521)
++..+..| .|......++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|..++++..+..
T Consensus 170 ~~al~~~P--~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 170 RKALELDP--DDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHH-T--T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 55555443 244445555555555555555555555444331 2333344455555555555555555555555433
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 306 NPNVFNYTTLMNGFCKEGKLQEAKEVFDEM 335 (521)
Q Consensus 306 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 335 (521)
+.|+.+...++.++...|+.++|.++.+++
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp TT-HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 334445555555555555555555554443
No 40
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1.3e-12 Score=114.55 Aligned_cols=324 Identities=20% Similarity=0.250 Sum_probs=232.3
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHH--HHccCcHHHH-HHHHHhhccccCCCCCHhHHHHH
Q 009977 96 ATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKH--FSNCSLHERV-LEMFHKIHPITREKPSLKAISTC 172 (521)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~~l 172 (521)
.+=+.|+.. ...|....+.-+|+.|.+.|++.++..-..+++. |....+.--| .+.|-.|...+. .+..+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E--~S~~sW--- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE--DSTSSW--- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc--cccccc---
Confidence 445555554 4578999999999999999999888877777664 3333333222 234544543221 121222
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009977 173 LNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG 252 (521)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 252 (521)
+.|++.+ -+++ ..+....++..+|.++++--+.+.|.+++++....... .+..++|.+|.+-.-
T Consensus 191 -----K~G~vAd--L~~E------~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k-v~~~aFN~lI~~~S~-- 254 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFE------TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGK-VYREAFNGLIGASSY-- 254 (625)
T ss_pred -----ccccHHH--HHHh------hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe-eeHHhhhhhhhHHHh--
Confidence 2343333 2333 23446779999999999999999999999998876664 788999998866433
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHH----HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHH-
Q 009977 253 RFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDR----AKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQE- 327 (521)
Q Consensus 253 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 327 (521)
....+++.+|... ...||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+.+.++..+
T Consensus 255 --~~~K~Lv~EMisq-km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 255 --SVGKKLVAEMISQ-KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred --hccHHHHHHHHHh-hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 2337789999887 699999999999999999998765 56788899999999999999999999999888754
Q ss_pred HHHHHHHHHh----CCCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCc---HhHHHHHHHHHHhc
Q 009977 328 AKEVFDEMKN----FLLK---P-DTIGYTTLINCFCRAGRVDEALELLKEMKERG----CKAD---IVTFNIILGGLCRE 392 (521)
Q Consensus 328 A~~~~~~~~~----~~~~---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~ 392 (521)
|..++.++.. ...+ | |...|...+..|.+..+.+-|.++-.-+.... +.|+ ..-|..+....++.
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 4444444432 2222 3 35556667778888889988888766544221 2222 23456677788888
Q ss_pred CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 009977 393 GKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRG 444 (521)
Q Consensus 393 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (521)
...+.-..+++.|.-.-..|+..+...++++..-.|.++-.-++|..++..|
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 8899999999999887777888888888888877888777777777766654
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.74 E-value=5.4e-14 Score=132.28 Aligned_cols=284 Identities=10% Similarity=0.049 Sum_probs=200.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHH--HHHHHHHhCCCHHH
Q 009977 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYN--VLIDGFCRGGKVDR 292 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~ 292 (521)
.|+++.|.+.+....+... .....|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHH
Confidence 6888888877776555322 11223333344557788888888888888654 34443222 33566777888888
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHH
Q 009977 293 AKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDT-------IGYTTLINCFCRAGRVDEALE 365 (521)
Q Consensus 293 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~ 365 (521)
|.+.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 888888887775 556777778888888888888888888888776544222 123333333344455566666
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 009977 366 LLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGF 445 (521)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (521)
+++.+.+.- +.+......+...+...|+.++|.+.+++..+. .+++... ++.+....++.+++++..+...+.
T Consensus 251 ~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~-- 323 (398)
T PRK10747 251 WWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ-- 323 (398)
T ss_pred HHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--
Confidence 666664432 236777888888999999999999999888874 3444322 233334558899999999888854
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 009977 446 LP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIK 513 (521)
Q Consensus 446 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 513 (521)
.| |+..+..+...|.+.|++++|...|+.+.+. .|+...+..+..++.+.|+.++|.+++++.+.-
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44 6667788889999999999999999988876 688888888999999999999999999988664
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2.6e-14 Score=126.98 Aligned_cols=398 Identities=13% Similarity=0.033 Sum_probs=200.3
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHH
Q 009977 62 HGAAISLIKCEKEPQCALEIFNTVSEQKGFNHN-NATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHF 140 (521)
Q Consensus 62 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (521)
+....+-+.++|.+++|++++.+++.. .|| ++.|.....+|...|+|++..+---+.++.+ |.-..++..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHH
Confidence 344556678899999999999999866 467 8889999999999999999988888887765 44456777778888
Q ss_pred HccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHh------
Q 009977 141 SNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCK------ 214 (521)
Q Consensus 141 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------ 214 (521)
-..|++++|+.=..-.-- .+.-.+..+-..+=+.+-+.+. ..+.+-++. .+..+-|+....++....+..
T Consensus 194 E~lg~~~eal~D~tv~ci-~~~F~n~s~~~~~eR~Lkk~a~-~ka~e~~k~--nr~p~lPS~~fi~syf~sF~~~~~~~~ 269 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCI-LEGFQNASIEPMAERVLKKQAM-KKAKEKLKE--NRPPVLPSATFIASYFGSFHADPKPLF 269 (606)
T ss_pred HhhccHHHHHHhhhHHHH-hhhcccchhHHHHHHHHHHHHH-HHHHHhhcc--cCCCCCCcHHHHHHHHhhccccccccc
Confidence 888999888754322210 1111111111111111111111 111111110 011223333333222222210
Q ss_pred ----------------------cCChHHHHHHHHHHHhCCCCC--CC---------HHHHHHHHHHHHhcCChHHHHHHH
Q 009977 215 ----------------------RGTLESAFEVLKEMKKSQMSY--PN---------LITYSTLIDGLCKNGRFREAIELF 261 (521)
Q Consensus 215 ----------------------~g~~~~A~~~~~~~~~~~~~~--~~---------~~~~~~l~~~~~~~g~~~~A~~~~ 261 (521)
...+..|.+.+.+-....... .+ ..+....+..+.-.|+.-.|..-|
T Consensus 270 ~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 270 DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 011222222222211100000 01 111222222233355555666666
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 009977 262 EEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK 341 (521)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 341 (521)
+..++... .+...|.-+..+|....+.++..+.|+...+.+ +.++.+|..-.+++.-.+++++|..=|++.... .
T Consensus 350 ~~~I~l~~--~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~ 424 (606)
T KOG0547|consen 350 DAAIKLDP--AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--D 424 (606)
T ss_pred HHHHhcCc--ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--C
Confidence 66555432 112224445555556666666666666665554 445555555555555566666666666655542 2
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCc-----cCHH
Q 009977 342 P-DTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIY-----LNKA 415 (521)
Q Consensus 342 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~ 415 (521)
| +...|-.+..+..+.+++++++..|++..+.-+. -+..|+.....+...++++.|.+.|+...+.... .+..
T Consensus 425 pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~ 503 (606)
T KOG0547|consen 425 PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAA 503 (606)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccch
Confidence 2 2344444444455555666666666665554222 3455555566666666666666666655543111 0111
Q ss_pred H--HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 416 S--YRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLV 476 (521)
Q Consensus 416 ~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 476 (521)
. --.++.. .-.+++..|..+++++++ ++| ....+..|...-.+.|+.++|+++|++..
T Consensus 504 plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 504 PLVHKALLVL-QWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhhhhHhhh-chhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1 1111111 122555566666665553 344 33445555555556666666666665544
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.74 E-value=3.7e-14 Score=134.22 Aligned_cols=291 Identities=11% Similarity=0.010 Sum_probs=179.1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH--HHHHHHHHHHHhCCCH
Q 009977 213 CKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDA--LTYNVLIDGFCRGGKV 290 (521)
Q Consensus 213 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~ 290 (521)
...|+++.|.+.+.+..+..+ .....+-....+....|+++.|.+++.++.+. .|+. .........+...|++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~--~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAA--EPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCCH
Confidence 346777777777766655543 22333444556666677777777777776543 2332 2223345666667777
Q ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHH---HHhcCCHHHHHHH
Q 009977 291 DRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYT-TLINC---FCRAGRVDEALEL 366 (521)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~---~~~~~~~~~A~~~ 366 (521)
+.|...++.+.+.. |.+..+...+...+...|++++|.+.+..+.+.+.. +...+. ....+ +...+..+++.+.
T Consensus 170 ~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 170 HAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 77777777777664 445566667777777777777777777777765433 222221 11111 1222222333334
Q ss_pred HHHHHHcCCC---CcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 009977 367 LKEMKERGCK---ADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKAS-YRIVLNFSCQKGELEKAIELLRLMLC 442 (521)
Q Consensus 367 ~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (521)
+..+.+..+. .+...+..++..+...|+.++|.+.+++..+..+...... ...........++.+.+.+.++...+
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 4444433221 2667777778888888888888888888877633211111 11111222345777888888888775
Q ss_pred CCCCC-CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 009977 443 RGFLP-HY--ATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 443 ~~~~p-~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 512 (521)
. .| |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 328 ~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 N--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred h--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 44 44 566778888888899999999888544333368888888888888888998899888887643
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.73 E-value=6.7e-14 Score=132.42 Aligned_cols=293 Identities=11% Similarity=0.019 Sum_probs=183.9
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCcH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH
Q 009977 177 IESNQVDLAQNFLKYSNQHLRLKPNT-CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFR 255 (521)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 255 (521)
...|+++.|.+.+....+ ..|++ ..+.....++.+.|+++.|.+.+.+..+..+. +...........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~-~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN-DNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-CchHHHHHHHHHHHHCCCHH
Confidence 346777777777766543 23443 33444466677777777777777777654432 22233444466677777777
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHH-HHHHH---HHhcCCHHHHHHH
Q 009977 256 EAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYT-TLMNG---FCKEGKLQEAKEV 331 (521)
Q Consensus 256 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~---~~~~~~~~~A~~~ 331 (521)
.|...++.+.+.. |-+...+..+...+...|++++|.+.+..+.+.+.. +...+. .-..+ ....+..+++.+.
T Consensus 171 ~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 171 AARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 7777777777653 445566777777777777777777777777776533 322221 11111 1222223333334
Q ss_pred HHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhH-HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 332 FDEMKNFLL---KPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVT-FNIILGGLCREGKIEEALGMLEKLWY 407 (521)
Q Consensus 332 ~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~ 407 (521)
+..+.+... +.+...+..+...+...|+.++|.+++++..+..+...... ...........++.+.+.+.+++..+
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 444433221 12677777788888888888888888888887643321111 11122222335677788888888777
Q ss_pred CCCccCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 408 DGIYLNK--ASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVE 477 (521)
Q Consensus 408 ~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 477 (521)
..+. |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 328 ~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6333 44 566678888888889999999888544334578888888888888888998888888887653
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.73 E-value=1.1e-13 Score=130.19 Aligned_cols=285 Identities=12% Similarity=0.042 Sum_probs=168.2
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCcHHHH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009977 179 SNQVDLAQNFLKYSNQHLRLKPNTCIF-NILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREA 257 (521)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 257 (521)
.|+++.|.+.+....+. .+++..+ ........+.|+++.|.+.+.++.+..+. ............+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~-~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADN-DQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHCCCHHHH
Confidence 46666666555544321 1222222 22234446667777777777766654431 1112222335566666777777
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc-------chHHHHHHHHHhcCCHHHHHH
Q 009977 258 IELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNV-------FNYTTLMNGFCKEGKLQEAKE 330 (521)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~ 330 (521)
...++++.+.. |-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 173 l~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 173 RHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 77777766542 445556666666677777777777777777665432211 122222333333344455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009977 331 VFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGI 410 (521)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 410 (521)
+++.+.+. .+.++.....+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+...+..+
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC
Confidence 55554332 2335666677777777777777777777777664 233321 123333445777777777777776644
Q ss_pred ccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 411 YLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVE 477 (521)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 477 (521)
. |+..+..+...|.+.+++++|.+.|+.+.+ ..|+...+..+..++.+.|+.++|..++++.+.
T Consensus 326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3 566677777777777888888888877774 467777777777777778888887777776654
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=6e-14 Score=118.31 Aligned_cols=292 Identities=16% Similarity=0.168 Sum_probs=209.8
Q ss_pred cCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc--HHHHHHHHHHHHhcCChHH
Q 009977 143 CSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPN--TCIFNILIKHHCKRGTLES 220 (521)
Q Consensus 143 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 220 (521)
..+.++|+++|-.|.+ ..+.+..+..++.+.|.+.|..|.|+++.+.+..+.+.+-+ ..+...|.+-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3556677777666652 33444455566677777777777777777777654333332 3356677888999999999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHH
Q 009977 221 AFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD---ALTYNVLIDGFCRGGKVDRAKKIM 297 (521)
Q Consensus 221 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~ 297 (521)
|.++|..+.+.+. .-......|+..|-...+|++|++.-+++.+.++-+-. ...|.-+...+....+.+.|..++
T Consensus 126 AE~~f~~L~de~e--fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 126 AEDIFNQLVDEGE--FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHhcchh--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999887654 45567778899999999999999999988776432222 234556666666778899999999
Q ss_pred HHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 009977 298 EFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKA 377 (521)
Q Consensus 298 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 377 (521)
.+..+.+ +..+.+--.+.+.+...|++++|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+...
T Consensus 204 ~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~-- 280 (389)
T COG2956 204 KKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT-- 280 (389)
T ss_pred HHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 9998876 5566666678889999999999999999998865444467778888999999999999999998887743
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHC
Q 009977 378 DIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ---KGELEKAIELLRLMLCR 443 (521)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 443 (521)
....-..+...-....-.+.|..++.+-... .|+...+..++..... .|...+.+..++.|+..
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 3334444444444445566666666655554 6788888888886543 35567777788888743
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=5.4e-15 Score=136.59 Aligned_cols=284 Identities=15% Similarity=0.067 Sum_probs=127.7
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhCCCHHHHHHH
Q 009977 218 LESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQIL-PDALTYNVLIDGFCRGGKVDRAKKI 296 (521)
Q Consensus 218 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 296 (521)
..+|...|..+..... ........++.+|...+++++|.++|+.+.+..+.. -+...|.+.+..+-+ +-++..
T Consensus 335 ~~~A~~~~~klp~h~~--nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHY--NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHhhHHhcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 3445555555333322 222333444555555555555555555554432211 123334433332211 111111
Q ss_pred H-HHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009977 297 M-EFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKP-DTIGYTTLINCFCRAGRVDEALELLKEMKERG 374 (521)
Q Consensus 297 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 374 (521)
+ +.+.+.. +..+.+|..++++|.-.++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+..+...
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 1 2222221 33444555555555555555555555555544 223 24444444444555555555555555544432
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHH
Q 009977 375 CKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSN 453 (521)
Q Consensus 375 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~ 453 (521)
+. +-.+|..+...|.+.++++.|+-.|+++.+.++. +......+...+-+.|+.++|+++++++.. ++| |+..-.
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~ 561 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKY 561 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHH
Confidence 22 2333444455555555555555555555544333 334444444445555555555555555552 233 333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCc
Q 009977 454 ELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKES 515 (521)
Q Consensus 454 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 515 (521)
.-+..+...+++++|...++++.+.- +.+...+..++..|.+.|+.+.|+.-|-=|.+-+|
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 34444445555555555555555431 22224444455555555555555555554444433
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=6.8e-17 Score=145.29 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHhcCCchHHHHHH
Q 009977 102 LDKLARYKKFEAVDAVL 118 (521)
Q Consensus 102 ~~~~~~~~~~~~a~~~~ 118 (521)
...+.+.|++++|.+++
T Consensus 15 A~~~~~~~~~~~Al~~L 31 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVL 31 (280)
T ss_dssp -----------------
T ss_pred ccccccccccccccccc
Confidence 33333444444444444
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=9.8e-15 Score=134.89 Aligned_cols=288 Identities=16% Similarity=0.103 Sum_probs=220.8
Q ss_pred CcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC-CcHHHHHHHHHHHHhcCChHHHH
Q 009977 144 SLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLK-PNTCIFNILIKHHCKRGTLESAF 222 (521)
Q Consensus 144 g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 222 (521)
=+..+|+..|.+++. ...-+......+.++|.+.+++++|+++|+.+.+..... .+..+|.+.+-.+- + +-++
T Consensus 333 y~~~~A~~~~~klp~--h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~-~v~L 406 (638)
T KOG1126|consen 333 YNCREALNLFEKLPS--HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---D-EVAL 406 (638)
T ss_pred HHHHHHHHHHHhhHH--hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---h-hHHH
Confidence 356789999988653 233344777788999999999999999999886532222 24667777665442 2 2222
Q ss_pred H-HHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009977 223 E-VLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMK 301 (521)
Q Consensus 223 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 301 (521)
. +-+.+.+..+ ..+.+|..++.+|.-+++++.|++.|++.+..+ +-...+|+.+..-+.....+|+|...|+..+
T Consensus 407 s~Laq~Li~~~~--~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 407 SYLAQDLIDTDP--NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHHHHhhCC--CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 2 3334444444 577899999999999999999999999998763 4478899999999999999999999999888
Q ss_pred HcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhH
Q 009977 302 NNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVT 381 (521)
Q Consensus 302 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 381 (521)
... +-+-.+|.-++-.|.+.++++.|+-.|+++.+.++. +.+....+...+.+.|+.++|+.+++++...+.+ |+..
T Consensus 483 ~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~ 559 (638)
T KOG1126|consen 483 GVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLC 559 (638)
T ss_pred cCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cchh
Confidence 643 334456667888999999999999999999874432 4566677778888999999999999999888766 5555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 009977 382 FNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP 447 (521)
Q Consensus 382 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 447 (521)
--..+..+...+++++|+..++++.+.-+. +...+..+...|.+.|+.+.|+.-|--+.+ ++|
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~--ldp 622 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALD--LDP 622 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhc--CCC
Confidence 555677788889999999999999886322 556678888999999999999999988884 455
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=6.7e-12 Score=114.07 Aligned_cols=440 Identities=13% Similarity=0.067 Sum_probs=311.6
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHH
Q 009977 61 SHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHF 140 (521)
Q Consensus 61 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (521)
-+..+..-+..+..+..|+-+-++.. ++.-|+..-..+.+++.-.|+++.|..++..-.-. ..+..+.......+
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~---~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l 92 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVA---GLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCL 92 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH---hccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHH
Confidence 34455555666778888888877764 33455555566888888899999998887665332 35667777888889
Q ss_pred HccCcHHHHHHHHHhh----ccccCCCCC--------HhH----HH-------HHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 009977 141 SNCSLHERVLEMFHKI----HPITREKPS--------LKA----IS-------TCLNLLIESNQVDLAQNFLKYSNQHLR 197 (521)
Q Consensus 141 ~~~g~~~~a~~~~~~~----~~~~~~~~~--------~~~----~~-------~ll~~~~~~~~~~~a~~~~~~~~~~~~ 197 (521)
.+..++++|..++.+. ........+ ..- .+ .-..+|....+.++|...|.+++.
T Consensus 93 ~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~--- 169 (611)
T KOG1173|consen 93 VKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL--- 169 (611)
T ss_pred HHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh---
Confidence 9999999999998832 111111111 000 00 112455556677888888887753
Q ss_pred CCCcHHHH---HHHHHHHHhc-----------------CC-hHHHHHHHHHHHhCC------CC---------CCCHHHH
Q 009977 198 LKPNTCIF---NILIKHHCKR-----------------GT-LESAFEVLKEMKKSQ------MS---------YPNLITY 241 (521)
Q Consensus 198 ~~~~~~~~---~~l~~~~~~~-----------------g~-~~~A~~~~~~~~~~~------~~---------~~~~~~~ 241 (521)
.|+..+ ..++....-. +. .+.-..+|+-..... .. ..+....
T Consensus 170 --~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll 247 (611)
T KOG1173|consen 170 --ADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLL 247 (611)
T ss_pred --cchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHH
Confidence 233332 2222222111 11 111111222110000 00 1233444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 009977 242 STLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK 321 (521)
Q Consensus 242 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 321 (521)
.....-+...+++.+..++.+...+.+ ++....+..-|.++...|+..+-..+-.++.+.- |..+.+|..++-.|..
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHH
Confidence 455566778899999999999999876 4555566667778899999888888888888774 6778899999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 009977 322 EGKLQEAKEVFDEMKNFLLKPD-TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALG 400 (521)
Q Consensus 322 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 400 (521)
.|..++|.+.|.+.... .|. ...|-.....|.-.|..|+|+..+..+-+.-.. ....+.-+..-|.+.++.+.|.+
T Consensus 325 i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred hcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHH
Confidence 99999999999988763 333 578999999999999999999999887664211 22334456667888999999999
Q ss_pred HHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009977 401 MLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCR--GFLP----HYATSNELLVRLCKAGMAEDAAIALFG 474 (521)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 474 (521)
+|.++....+. |+..++-+.-.....+.+.+|..+|+..+.. .+.+ -..+++.|..+|.+.+++++|+..+++
T Consensus 402 Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 402 FFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 99998876433 7778888877777889999999999988732 1111 345678899999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccCc
Q 009977 475 LVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESGTI 518 (521)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 518 (521)
.+... +.+..++..++-.|...|+++.|.+.|++.+-..|.++
T Consensus 481 aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 481 ALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred HHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 98764 56778999999999999999999999999998887763
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=4.2e-12 Score=110.77 Aligned_cols=285 Identities=13% Similarity=0.044 Sum_probs=171.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 009977 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAK 294 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 294 (521)
.|+|.+|.+...+-.+.+. .....|..-+.+--+.|+.+.+-.++.++-+.. -.++..............|+++.|.
T Consensus 97 eG~~~qAEkl~~rnae~~e--~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE--QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc--chHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHH
Confidence 5666666666666555543 233444445555556666666666666665431 1233344445555556666666666
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 009977 295 KIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDT-------IGYTTLINCFCRAGRVDEALELL 367 (521)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~ 367 (521)
.-.+++.+.+ +-++.+.....++|.+.|++.....++..+.+.+.-.+. .+|..++.-....+..+.-...+
T Consensus 174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 6666666654 445556666666666666666666666666665544332 34555555544444455544555
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 009977 368 KEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP 447 (521)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 447 (521)
+..... .+-++..-..++.-+.+.|+.++|.++.++..+.+..|+ ... .-.+.+-++...-++..++..+. .+.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~-h~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQ-HPE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHh-CCC
Confidence 554433 122455556666777777777777777777777655443 111 12244566666666666666543 223
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 009977 448 HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELV 511 (521)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 511 (521)
++..+..|...|.+.+.|.+|...|+...+. .|+..+|..+..++.+.|+..+|.+..++.+
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4566777777777777777777777766655 5777777777777777777777777777655
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.63 E-value=8e-12 Score=109.02 Aligned_cols=287 Identities=16% Similarity=0.118 Sum_probs=184.5
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009977 179 SNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAI 258 (521)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 258 (521)
.|++..|+++..+..+. +- -....|..-+.+.-+.|+.+.+-.++.+..+.... ++....-+........|+++.|.
T Consensus 97 eG~~~qAEkl~~rnae~-~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~-~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH-GE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD-DTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhc-Cc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHhCCCchhHH
Confidence 46666666666654322 11 12234445556666677777777777777665332 45555666666677777777777
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc-------chHHHHHHHHHhcCCHHHHHHH
Q 009977 259 ELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNV-------FNYTTLMNGFCKEGKLQEAKEV 331 (521)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~ 331 (521)
.-+.++.+.. +..+........+|.+.|++.....++..+.+.|.-.+. .++..+++-....+..+.-...
T Consensus 174 ~~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 174 ENVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 7777776553 444566677777777777777777777777776644443 2344455544444555554455
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCc
Q 009977 332 FDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIY 411 (521)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 411 (521)
|+..... .+.++..-..++.-+.++|+.++|.++.++..+.+..|. ....-.+.+-++.+.-++..++-.+....
T Consensus 252 W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 252 WKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred HHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC
Confidence 5554332 334556666677777788888888888888777766544 22223455666776666666666554332
Q ss_pred cCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 412 LNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
++..+..|...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+..+|..+.++.+..
T Consensus 327 -~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 327 -DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred -ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 557777788888888888888888887773 5778888888888888888888888887776643
No 53
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=1.1e-11 Score=106.10 Aligned_cols=425 Identities=12% Similarity=0.038 Sum_probs=270.7
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCc
Q 009977 66 ISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSL 145 (521)
Q Consensus 66 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (521)
+.-+..+.++..|+.+++... ..+-.....+-..+..++.+.|++++|...+.-+.+.. .++...+..+.-.+.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~-~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKL-NLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhh-ccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 455677889999999998763 22222223445557788899999999999999988765 5666778888888888899
Q ss_pred HHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHH
Q 009977 146 HERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVL 225 (521)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 225 (521)
+.+|..+-.+.. .++-....+.....+.++-++-..+.+.+.. ...--.+|.......-.+++|++++
T Consensus 107 Y~eA~~~~~ka~------k~pL~~RLlfhlahklndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdvY 174 (557)
T KOG3785|consen 107 YIEAKSIAEKAP------KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDVY 174 (557)
T ss_pred HHHHHHHHhhCC------CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999877653 3344455566677778888888877776632 2234455566666666789999999
Q ss_pred HHHHhCCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH----
Q 009977 226 KEMKKSQMSYPNLITYST-LIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFM---- 300 (521)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---- 300 (521)
..+...++ +-...|. +.-+|.+..-++-+.+++.-.+.. ++.++...|..+....+.=+-..|.+-...+
T Consensus 175 krvL~dn~---ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~ 249 (557)
T KOG3785|consen 175 KRVLQDNP---EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNI 249 (557)
T ss_pred HHHHhcCh---hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcc
Confidence 99987664 3333333 445678888889898888888765 4555555555544444322211222222222
Q ss_pred ----------HHcCC------------CC-----CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009977 301 ----------KNNGC------------NP-----NVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINC 353 (521)
Q Consensus 301 ----------~~~~~------------~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 353 (521)
.++++ -| -+..-..|+-.|.+.++..+|..+.+++.. ..|-......++
T Consensus 250 ~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv-- 325 (557)
T KOG3785|consen 250 DQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV-- 325 (557)
T ss_pred cccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH--
Confidence 11110 00 122334556667888999999888877542 122222222222
Q ss_pred HHhcC-------CHHHHHHHHHHHHHcCCCCcHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 009977 354 FCRAG-------RVDEALELLKEMKERGCKADIV-TFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSC 425 (521)
Q Consensus 354 ~~~~~-------~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (521)
++..| ...-|...|.-.-+.+..-|.. --.++...+.-..++++.+.++..+...-...|.. .-.+..+++
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~F-n~N~AQAk~ 404 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDF-NLNLAQAKL 404 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh-hhHHHHHHH
Confidence 22222 2344555555443333222221 22344555555667888888888887653332333 335778888
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHH
Q 009977 426 QKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES-DSWALLVELICRGRKLLFAF 504 (521)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 504 (521)
..|.+.+|.++|-.+....++.+......|.++|.+.++++.|+.++-++-. +.+. .....++..|.+.+.+=-|.
T Consensus 405 atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaa 481 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAA 481 (557)
T ss_pred HhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887444444444445677888999999999887644322 2333 33445557888999999999
Q ss_pred HHHHHHHHcCccC
Q 009977 505 ELLDELVIKESGT 517 (521)
Q Consensus 505 ~~~~~m~~~~~~~ 517 (521)
+.|+.+...+|.+
T Consensus 482 KAFd~lE~lDP~p 494 (557)
T KOG3785|consen 482 KAFDELEILDPTP 494 (557)
T ss_pred HhhhHHHccCCCc
Confidence 9999988877764
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.61 E-value=4e-10 Score=104.19 Aligned_cols=437 Identities=11% Similarity=0.101 Sum_probs=281.5
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHH
Q 009977 61 SHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHF 140 (521)
Q Consensus 61 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (521)
.|-..+..+..+++...-...|++++....+......|...+......+-++.+..++++.++.. +......+..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHH
Confidence 57777888889999999999999998776666667789999999999999999999999998653 33466778888
Q ss_pred HccCcHHHHHHHHHhhccccC-----CCCCHhHHHHHHHHHHhcCCHHH---HHHHHHHhhhcCCCCCc--HHHHHHHHH
Q 009977 141 SNCSLHERVLEMFHKIHPITR-----EKPSLKAISTCLNLLIESNQVDL---AQNFLKYSNQHLRLKPN--TCIFNILIK 210 (521)
Q Consensus 141 ~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~--~~~~~~l~~ 210 (521)
...+++++|.+.+..+..... .+.+-..|..+.+..+++.+.-. ...+++..+. .-+| ...|+.|+.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~---rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR---RFTDQLGFLWCSLAD 256 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc---cCcHHHHHHHHHHHH
Confidence 999999999999988753211 13344556667676666554432 3345555443 2244 348999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----------------C------ChHHHHHHHHHHHhcC
Q 009977 211 HHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKN----------------G------RFREAIELFEEMVSKD 268 (521)
Q Consensus 211 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g------~~~~A~~~~~~~~~~~ 268 (521)
.|.+.|.+++|.++|++....-. .+.-+..+.++|+.- | +++-.+.-|+.+....
T Consensus 257 YYIr~g~~ekarDvyeeai~~v~---tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTVM---TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhe---ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 99999999999999999876532 333344444443321 1 1233344455554432
Q ss_pred CC----------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC------cchHHHHHHHHHhcCCHHHHHHHH
Q 009977 269 QI----------LPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPN------VFNYTTLMNGFCKEGKLQEAKEVF 332 (521)
Q Consensus 269 ~~----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~ 332 (521)
+. +.+...|..-+. +..|+..+-...|.++.+. +.|. ...|..+...|-..|+++.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 11 222333333332 2346667777777777654 1222 235778888899999999999999
Q ss_pred HHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------------cHhHHHHHHHHHHhc
Q 009977 333 DEMKNFLLKPD---TIGYTTLINCFCRAGRVDEALELLKEMKERGCKA-----------------DIVTFNIILGGLCRE 392 (521)
Q Consensus 333 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~ 392 (521)
++..+...+.- ..+|.....+-.+..+++.|+++.+......-.| +...|...+...-..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 99877543321 3556666667777888999998887765431111 223445555555566
Q ss_pred CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh---cCCHHHH
Q 009977 393 GKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCK---AGMAEDA 468 (521)
Q Consensus 393 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~---~g~~~~a 468 (521)
|-++....+++++....+. ++.........+-.+..++++.++|++-+..=-.| -...|+..+.-+.+ ....+.|
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 7888888888888876554 44444444444556667788888887765432223 34556666555543 2357788
Q ss_pred HHHHHHHHHCCCCCCHH--HHHHHHHHHHccCcHHHHHHHHHHHHH
Q 009977 469 AIALFGLVEMGFKPESD--SWALLVELICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 469 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~ 512 (521)
..+|+++++ |.+|... .|......--+.|-...|+.+++++..
T Consensus 570 RdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 570 RDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 888888887 4344431 222222222346777777777777654
No 55
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.61 E-value=4.3e-11 Score=112.91 Aligned_cols=420 Identities=15% Similarity=0.108 Sum_probs=276.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHH
Q 009977 90 GFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAI 169 (521)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 169 (521)
.+.-|...|..+.-++.+.|+++.+.+.|++....- --....|..+...|...|....|+.+++........+++...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 455678888888889999999999999999887543 3345678888888888999999999988776434334444455
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHhhhcCCCC---CcHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhCCCC
Q 009977 170 STCLNLLIE-SNQVDLAQNFLKYSNQHLRLK---PNTCIFNILIKHHCKR-----------GTLESAFEVLKEMKKSQMS 234 (521)
Q Consensus 170 ~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~ 234 (521)
......|.+ .+.+++++.+-.+++...+.. ..+..|..+.-+|... ....++++.+++..+.++.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 555555554 567777777776665422211 1234555555555421 1235678888888888875
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHH
Q 009977 235 YPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTT 314 (521)
Q Consensus 235 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 314 (521)
.|++..| +.--|+..++.+.|.+..++..+.+ -..+...|..+.-.+...+++.+|+.+.+...+.- ..|-.....
T Consensus 477 dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~-~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~ 552 (799)
T KOG4162|consen 477 DPLVIFY--LALQYAEQRQLTSALDYAREALALN-RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDG 552 (799)
T ss_pred CchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchh
Confidence 4544444 4445777889999999999998873 35677888888888888999999999988777542 122111112
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC---------------------CC-----CC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 009977 315 LMNGFCKEGKLQEAKEVFDEMKNF---------------------LL-----KP--DTIGYTTLINCFCRAGRVDEALEL 366 (521)
Q Consensus 315 l~~~~~~~~~~~~A~~~~~~~~~~---------------------~~-----~~--~~~~~~~l~~~~~~~~~~~~A~~~ 366 (521)
-+..-...++.++|......+... |. .| ...++..+....... .+.+..-
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~--~~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ--LKSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh--hhhcccc
Confidence 222223355655555544433210 00 00 011222211111100 0000000
Q ss_pred HHHHHHcCCC--Cc------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 009977 367 LKEMKERGCK--AD------IVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLR 438 (521)
Q Consensus 367 ~~~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (521)
.. +...... |+ ...|......+.+.+..++|.-.+.+..... ......|......+...|..++|.+.|.
T Consensus 631 ~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 631 LK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred cc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 00 1111111 22 1234556677888899999998888887653 2356667777777888999999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCc
Q 009977 439 LMLCRGFLP-HYATSNELLVRLCKAGMAEDAAI--ALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKES 515 (521)
Q Consensus 439 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 515 (521)
.+. .+.| ++.+..++..++.+.|+..-|.. ++..+++.+ +.+.+.|..+...+.+.|+.++|.+.|..+.+-..
T Consensus 709 ~Al--~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 709 VAL--ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHH--hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 988 4677 77888899999999998877777 999999886 45679999999999999999999999999999776
Q ss_pred cCccCC
Q 009977 516 GTIQVP 521 (521)
Q Consensus 516 ~~~~v~ 521 (521)
++.-.|
T Consensus 786 S~PV~p 791 (799)
T KOG4162|consen 786 SNPVLP 791 (799)
T ss_pred CCCccc
Confidence 655443
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=7.6e-11 Score=107.40 Aligned_cols=418 Identities=12% Similarity=0.043 Sum_probs=292.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhc--cCCcCHHH--------
Q 009977 63 GAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYE--TCKFHEGI-------- 132 (521)
Q Consensus 63 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~-------- 132 (521)
-.++.++.-.+++++|..+...- .. ...|.........++.+..++++|..++...... .+.-++..
T Consensus 53 ~~~aq~l~~~~~y~ra~~lit~~-~l--e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n 129 (611)
T KOG1173|consen 53 YWLAQVLYLGRQYERAAHLITTY-KL--EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELN 129 (611)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHh-hh--hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccC
Confidence 34666777778888887777553 11 1457788888889999999999999999833111 11101111
Q ss_pred --H------------HHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHh-----------------cC-
Q 009977 133 --F------------LNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIE-----------------SN- 180 (521)
Q Consensus 133 --~------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----------------~~- 180 (521)
. ..-...|......++|...|.+... .+.-....+..++....- .+
T Consensus 130 ~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~--~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~e 207 (611)
T KOG1173|consen 130 SAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL--ADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKE 207 (611)
T ss_pred cccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh--cchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhh
Confidence 0 0111234444567888888877642 111222222222211111 01
Q ss_pred CHHHHHHHHHHhhhc---------------CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 009977 181 QVDLAQNFLKYSNQH---------------LRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLI 245 (521)
Q Consensus 181 ~~~~a~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 245 (521)
+.+.-..+|+....+ .+...++.....-...+...+++.+..++++.+.+..+ +....+..-|
T Consensus 208 d~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp--fh~~~~~~~i 285 (611)
T KOG1173|consen 208 DVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP--FHLPCLPLHI 285 (611)
T ss_pred HHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC--CCcchHHHHH
Confidence 111122222211000 02223455566667778889999999999999999887 5666666677
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCH
Q 009977 246 DGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKL 325 (521)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 325 (521)
.++...|+..+-..+=.++.+. .|..+.+|-++.-.|...|+..+|.+.|.+....+ +.-...|...+..|.-.|..
T Consensus 286 a~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~Eh 362 (611)
T KOG1173|consen 286 ACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEH 362 (611)
T ss_pred HHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchH
Confidence 7999999988888888888876 46678899999999999999999999999988654 33345888999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 326 QEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKL 405 (521)
Q Consensus 326 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 405 (521)
++|+..+..+.+.-.. ....+--+..-|.+.++.+.|.++|.+.....+. |+...+-+.-.....+.+.+|..+|+..
T Consensus 363 dQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~ 440 (611)
T KOG1173|consen 363 DQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKA 440 (611)
T ss_pred HHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHH
Confidence 9999999887653111 1111223444578899999999999998877544 7788888888888889999999999988
Q ss_pred HHC----CCc--cCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009977 406 WYD----GIY--LNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMG 479 (521)
Q Consensus 406 ~~~----~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 479 (521)
+.. +.+ .-..+++.|..+|.+.+.+++|+..+++.+.. .+-+..++.++.-.|...|+++.|...|.+.+..
T Consensus 441 l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l- 518 (611)
T KOG1173|consen 441 LEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL- 518 (611)
T ss_pred HHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc-
Confidence 732 111 13456889999999999999999999999964 2348899999999999999999999999988765
Q ss_pred CCCCHHHHHHHHHHHH
Q 009977 480 FKPESDSWALLVELIC 495 (521)
Q Consensus 480 ~~~~~~~~~~l~~~~~ 495 (521)
.|+..+...++..+.
T Consensus 519 -~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 519 -KPDNIFISELLKLAI 533 (611)
T ss_pred -CCccHHHHHHHHHHH
Confidence 688766665555433
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.8e-10 Score=98.91 Aligned_cols=272 Identities=11% Similarity=0.054 Sum_probs=171.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHH
Q 009977 236 PNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTL 315 (521)
Q Consensus 236 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 315 (521)
.|+.....+...+...|+.++|+..|++....+ +-+...+....-.+.+.|+++....+...+.... ..+...|..-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 566777777777888888888888887775432 1122222222333456677777777776666542 2333344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 009977 316 MNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKI 395 (521)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 395 (521)
+.......++..|+.+-++..+... .+...+-.-...+...+++++|.-.|+..+...+. +...|..|+..|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchH
Confidence 4555566777777777776665321 13444444455667777888887777777665322 567788888888888888
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHH-HHHH-cCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 009977 396 EEALGMLEKLWYDGIYLNKASYRIVL-NFSC-QKGELEKAIELLRLMLCRGFLPHY-ATSNELLVRLCKAGMAEDAAIAL 472 (521)
Q Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~ 472 (521)
.+|...-+...+. ...+..+...+. ..|. ...--++|.+++++.+ .+.|+. ...+.+...|...|..++++.++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L--~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL--KINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh--ccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 7777666655543 222445555442 2222 2334567777777776 345632 34455666777788888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccC
Q 009977 473 FGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESGT 517 (521)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 517 (521)
++.+.. .||....+.|.+.+...+.+.+|++.|..++..+|.+
T Consensus 462 e~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 462 EKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 777654 5777777788888888888888888888777777665
No 58
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=5.7e-13 Score=112.61 Aligned_cols=237 Identities=14% Similarity=0.052 Sum_probs=189.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009977 278 NVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRA 357 (521)
Q Consensus 278 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 357 (521)
+-+..+|.+.|.+.+|.+.++..++. .|-+.||..|.++|.+..+...|+.++.+-.+. .+-|+.....+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 66788888999999999988888776 577778888899999999999999998887763 222444445667778888
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHH
Q 009977 358 GRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELL 437 (521)
Q Consensus 358 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 437 (521)
++.++|.++++...+.... +......+...|.-.++.+.|+.++++++..|+. ++..|+.+.-+|...++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 8999999999988877543 6667777777888888999999999999998877 8888888888888889999999999
Q ss_pred HHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCc
Q 009977 438 RLMLCRGFLP--HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKES 515 (521)
Q Consensus 438 ~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 515 (521)
++++..--.| -..+|..+.......|++..|.+.|+-.+..+ ....+.++.|.-.-.+.|+.++|..+++.+....|
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 8888654444 45567778777888899999999998877654 33457888888888889999999999999888887
Q ss_pred cCccC
Q 009977 516 GTIQV 520 (521)
Q Consensus 516 ~~~~v 520 (521)
.-.++
T Consensus 461 ~m~E~ 465 (478)
T KOG1129|consen 461 DMAEV 465 (478)
T ss_pred ccccc
Confidence 76554
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=4.7e-11 Score=106.72 Aligned_cols=397 Identities=15% Similarity=0.083 Sum_probs=265.9
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhccCCcC-HHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHH
Q 009977 97 TYATILDKLARYKKFEAVDAVLRQMTYETCKFH-EGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNL 175 (521)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (521)
.+-....-|.+.|++++|++.|.+.++. .|+ +..|.+...+|...|+|+++++--....+. .+.-..++..-..+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHH
Confidence 3555666788899999999999999876 455 566677888899999999999877766531 22234456666677
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCCHHHHHHHHHHHHhc--
Q 009977 176 LIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKK--SQMSYPNLITYSTLIDGLCKN-- 251 (521)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~-- 251 (521)
+-..|++++|+.=+.-..-..++. +..+--.+=+.+- ..|....++-.+ ..+..|+.....+....+...
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 778888888764332211111111 1111111111111 122222222222 223335555555555554321
Q ss_pred ------CC-----hHHHHHHHHHHHhcC-------------C--CCC-----C------HHHHHHHHHHHHhCCCHHHHH
Q 009977 252 ------GR-----FREAIELFEEMVSKD-------------Q--ILP-----D------ALTYNVLIDGFCRGGKVDRAK 294 (521)
Q Consensus 252 ------g~-----~~~A~~~~~~~~~~~-------------~--~~~-----~------~~~~~~l~~~~~~~~~~~~a~ 294 (521)
++ ..++.+.+..-...+ + ..+ | ..+.......+.-.|+.-.|.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 11 233344433332110 0 000 1 111122222234468888999
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009977 295 KIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERG 374 (521)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 374 (521)
.-|+..++.. +-+...|-.+..+|...++.++....|......+.. ++.+|..-..++.-.+++++|..=|++.+...
T Consensus 347 ~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~ 424 (606)
T KOG0547|consen 347 EDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD 424 (606)
T ss_pred hhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999875 333344888888999999999999999999875433 57788888888888899999999999999886
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC------
Q 009977 375 CKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPH------ 448 (521)
Q Consensus 375 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~------ 448 (521)
+. +...|-.+..+..+.+++++++..|++..+. ++-.+..|+.....+...+++++|.+.|+..++. .|.
T Consensus 425 pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v 500 (606)
T KOG0547|consen 425 PE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIV 500 (606)
T ss_pred hh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccc
Confidence 54 6778888888888999999999999999887 3336789999999999999999999999999854 332
Q ss_pred -HH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 009977 449 -YA--TSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES-DSWALLVELICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 449 -~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 512 (521)
.. +.-+++..-. .+++..|..+++++.+.+ |.. ..|..|.....+.|+.++|+++|++...
T Consensus 501 ~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 501 NAAPLVHKALLVLQW-KEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 2222332223 388999999999998874 544 6788999999999999999999998764
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.56 E-value=1e-11 Score=122.28 Aligned_cols=250 Identities=14% Similarity=0.070 Sum_probs=151.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC
Q 009977 217 TLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCK---------NGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRG 287 (521)
Q Consensus 217 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (521)
++++|.+.|++..+..| .+...|..+..++.. .+++++|...++++.+.+ +.+...+..+...+...
T Consensus 276 ~~~~A~~~~~~Al~ldP--~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 276 SLQQALKLLTQCVNMSP--NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHc
Confidence 45677777777777665 345556555554432 234677777887777653 45666677777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009977 288 GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELL 367 (521)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 367 (521)
|++++|...|+++++.+ +.+...+..+...+...|++++|...++++.+.... +...+..++..+...|++++|+..+
T Consensus 352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 78888888888777765 445666777777777788888888888777764322 1222233344455577778888877
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCC
Q 009977 368 KEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCR-GFL 446 (521)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~ 446 (521)
+++.+...+-+...+..+..++...|+.++|...+.++...... +....+.+...|...| ++|...++.+.+. .-.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 77765532223445666677777788888888877776554221 3334445555556666 3666666665532 222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 447 PHYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 447 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
|....+ +...+.-.|+.+.+... +++.+.
T Consensus 507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 222222 33334445665555544 665543
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.55 E-value=8.3e-10 Score=102.40 Aligned_cols=426 Identities=15% Similarity=0.103 Sum_probs=262.6
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHH
Q 009977 70 KCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERV 149 (521)
Q Consensus 70 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 149 (521)
...+++...+++.+.+++ +++....+.....-.+...|+-++|....+.....+ .-+...|..+.-.+....++++|
T Consensus 18 yE~kQYkkgLK~~~~iL~--k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILK--KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHhHHHHHHHHHH--hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHH
Confidence 345778888888888765 345555666566666677889999999888877655 34556777777778888999999
Q ss_pred HHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009977 150 LEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMK 229 (521)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 229 (521)
++.|.... ...+.|...+.-+.-.-++.|+++-....-..+.+. .+.....|..++.++.-.|++..|..++++..
T Consensus 95 iKcy~nAl--~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~ 170 (700)
T KOG1156|consen 95 IKCYRNAL--KIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFE 170 (700)
T ss_pred HHHHHHHH--hcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999886 334566667777766677788887777666665541 22344578888888888999999999999887
Q ss_pred hCCCCCCCHHHHHHH------HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 230 KSQMSYPNLITYSTL------IDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 230 ~~~~~~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
+.....++...+... .....+.|..++|.+.+..-... +......-..-...+.+.+++++|..++..++..
T Consensus 171 ~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 171 KTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 765322555554332 23456678888888887765432 2222333345566778889999999999999887
Q ss_pred CCCCCcchHH-HHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcHh
Q 009977 304 GCNPNVFNYT-TLMNGFCKEGKLQEAK-EVFDEMKNFLLKPDTIGYTTL-INCFCRAGRVDEALELLKEMKERGCKADIV 380 (521)
Q Consensus 304 ~~~~~~~~~~-~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 380 (521)
. ||...|. .+..++.+..+.-++. .+|....+.- |....-..+ +.......-.+..-.++..+.+.|+++
T Consensus 249 n--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~--- 321 (700)
T KOG1156|consen 249 N--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS--- 321 (700)
T ss_pred C--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---
Confidence 4 5544444 4444554344444444 5566554421 111111111 111111112223334555666666543
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HCC----------CccCHHHH--HHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 009977 381 TFNIILGGLCREGKIEEALGMLEKLW----YDG----------IYLNKASY--RIVLNFSCQKGELEKAIELLRLMLCRG 444 (521)
Q Consensus 381 ~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~----------~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (521)
++..+...|-.-...+-..++.-.+. ..| -.|....| ..++..+-..|+++.|..+++.++.
T Consensus 322 vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId-- 399 (700)
T KOG1156|consen 322 VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID-- 399 (700)
T ss_pred hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--
Confidence 33333333322221111111111111 111 03343333 3556677788888888888888883
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 009977 445 FLPH-YATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKE 514 (521)
Q Consensus 445 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 514 (521)
..|+ ++.|..-.+.+...|++++|...+++..+.+ .+|...-...+.-..++++.++|.+++......+
T Consensus 400 HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 400 HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 4553 3444455577888888888888888887765 4555554466777778888888888877776655
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.54 E-value=1.9e-11 Score=120.32 Aligned_cols=270 Identities=13% Similarity=0.037 Sum_probs=188.3
Q ss_pred CCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh---------CCCHHHHHHHHHHHH
Q 009977 236 PNLITYSTLIDGLCK-----NGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCR---------GGKVDRAKKIMEFMK 301 (521)
Q Consensus 236 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 301 (521)
.+...|...+.+... .+++++|+.+|++..+.+ +.+...|..+..++.. .+++++|...+++++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 444555444444221 234679999999998764 4455666666655442 245789999999999
Q ss_pred HcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhH
Q 009977 302 NNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVT 381 (521)
Q Consensus 302 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 381 (521)
+.. +.+..++..+...+...|++++|...|+++.+... .+...+..+...+...|++++|+..++++.+..+. +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 876 66777888888899999999999999999988532 24677888888999999999999999999987654 3333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 009977 382 FNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPH-YATSNELLVRLC 460 (521)
Q Consensus 382 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 460 (521)
+..++..+...|++++|...++++......-++..+..+..++...|++++|...++++... .|+ ....+.+...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 34445556778999999999999876532224556777888888999999999999887643 443 344455555666
Q ss_pred hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccC
Q 009977 461 KAGMAEDAAIALFGLVEM-GFKPESDSWALLVELICRGRKLLFAFELLDELVIKESGT 517 (521)
Q Consensus 461 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 517 (521)
..| +.|...++.+.+. .-.+....+ +...+.-.|+-+.+..+ +++.+.++..
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~~~ 539 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDNIW 539 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccchHh
Confidence 666 4777777776642 112222222 44455567777666666 8888776543
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.54 E-value=1.3e-11 Score=108.50 Aligned_cols=89 Identities=11% Similarity=0.048 Sum_probs=35.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 009977 315 LMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGK 394 (521)
Q Consensus 315 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 394 (521)
+..++...|++++|...+.+...... .+...+..+...+...|++++|...+++..+.. ..+...+..++..+...|+
T Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 141 AGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGD 218 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhh
Confidence 33444444444444444444433211 123333344444444444444444444443331 1123333333444444444
Q ss_pred HHHHHHHHHHH
Q 009977 395 IEEALGMLEKL 405 (521)
Q Consensus 395 ~~~a~~~~~~~ 405 (521)
.++|..+.+.+
T Consensus 219 ~~~a~~~~~~~ 229 (234)
T TIGR02521 219 VAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 64
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.52 E-value=9.9e-10 Score=104.50 Aligned_cols=428 Identities=14% Similarity=0.118 Sum_probs=258.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHcc-
Q 009977 65 AISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNC- 143 (521)
Q Consensus 65 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 143 (521)
...++...|++++|++.++.... .+.............+.+.|+.++|..++..+++++ |.+..-|..+..+....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhc
Confidence 34567889999999999987532 234345567788899999999999999999999997 34444444455554222
Q ss_pred ----CcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHH-HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCCh
Q 009977 144 ----SLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVD-LAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTL 218 (521)
Q Consensus 144 ----g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 218 (521)
.+.+...++|+++.. ..|...+...+.-.+.....+. .+..++...+.+ |+| .+++.|-..|......
T Consensus 87 ~~~~~~~~~~~~~y~~l~~---~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvP---slF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAE---KYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVP---SLFSNLKPLYKDPEKA 159 (517)
T ss_pred ccccccHHHHHHHHHHHHH---hCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCc---hHHHHHHHHHcChhHH
Confidence 356777888888753 2344444433322222222332 344555555543 443 3666676777655555
Q ss_pred HHHHHHHHHHHhCC-------------CCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 219 ESAFEVLKEMKKSQ-------------MSYPNLITY--STLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 219 ~~A~~~~~~~~~~~-------------~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
+-..+++....... ...|....| ..+...|-..|++++|++++++.++.. |..+..|..-...
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~Kari 237 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHH
Confidence 55556665544321 112444334 556777888999999999999998863 3446788888999
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHH
Q 009977 284 FCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTI------GY--TTLINCFC 355 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~--~~l~~~~~ 355 (521)
+-+.|++.+|.+.++...... .-|...-+-.+..+.+.|+.++|.+++....+.+..|... .| .....+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876 4567777778888999999999999999887755433221 22 44566888
Q ss_pred hcCCHHHHHHHHHHHHHc-----CCCCcH----------hHHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCc--
Q 009977 356 RAGRVDEALELLKEMKER-----GCKADI----------VTFNIILGGLCREGK-------IEEALGMLEKLWYDGIY-- 411 (521)
Q Consensus 356 ~~~~~~~A~~~~~~~~~~-----~~~~~~----------~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~-- 411 (521)
+.|++..|++.|..+.+. .-+.|- .+|..++...-+... ...|.+++-.+......
T Consensus 317 r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~ 396 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQ 396 (517)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCccccc
Confidence 999999999877766543 011122 233333332211111 12344444444332100
Q ss_pred -c---------CHHHHHHHHHHH---HcCCCHHHHHHHHHH-H----------HH-CCCCCCHHHHHHHHHHHHhcCC-H
Q 009977 412 -L---------NKASYRIVLNFS---CQKGELEKAIELLRL-M----------LC-RGFLPHYATSNELLVRLCKAGM-A 465 (521)
Q Consensus 412 -~---------~~~~~~~l~~~~---~~~g~~~~a~~~~~~-~----------~~-~~~~p~~~~~~~l~~~~~~~g~-~ 465 (521)
. +..--..+..-. .+...-+++...-.+ - .. .....|... +..-+.+..+ .
T Consensus 397 ~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp---~GekL~~t~dPL 473 (517)
T PF12569_consen 397 GEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDP---LGEKLLKTEDPL 473 (517)
T ss_pred ccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCc---cHHHHhcCCcHH
Confidence 0 000000111000 000111111111000 0 00 001112222 2333444444 6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 009977 466 EDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDE 509 (521)
Q Consensus 466 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 509 (521)
++|.++++-+.+.+ +.+..+|..-.++|.+.|++--|++.+.+
T Consensus 474 e~A~kfl~pL~~~a-~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 474 EEAMKFLKPLLELA-PDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHHHhC-ccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 88999999888775 45668999999999999999999988765
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.52 E-value=1.7e-11 Score=107.68 Aligned_cols=196 Identities=11% Similarity=0.028 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHH
Q 009977 98 YATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLI 177 (521)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 177 (521)
+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.+++.... .+.+...+..+...+.
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHH
Confidence 3334444444444444444444443332 222333333444444444444444444433311 1112222333333333
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009977 178 ESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREA 257 (521)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 257 (521)
..|++++|...++.+......+.....+..+...+...|++++|...+++.....+ .+...+..+...+...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP--QRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CChHHHHHHHHHHHHcCCHHHH
Confidence 33333333333333332111111222333344444444444444444444444332 2333344444444444444444
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009977 258 IELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFM 300 (521)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 300 (521)
...+++.... .+.+...+..++..+...|+.++|..+.+.+
T Consensus 189 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4444444332 1223333333344444444444444444333
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.51 E-value=1.6e-10 Score=109.88 Aligned_cols=293 Identities=16% Similarity=0.150 Sum_probs=187.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 009977 172 CLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKN 251 (521)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 251 (521)
...++...|++++|++.++.... .+..........+..+.+.|+.++|..++..+.+.+| .|..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP--dn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP--DNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHhhh
Confidence 34456667777777777766432 3444455667777888888888888888888888776 4666666666655222
Q ss_pred -----CChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCH
Q 009977 252 -----GRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKV-DRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKL 325 (521)
Q Consensus 252 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 325 (521)
.+.+....+|+++.... |.......+.-.+.....+ ..+..++..+...|+|+ +|..+-..|......
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKA 159 (517)
T ss_pred cccccccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHH
Confidence 24566777777776542 3322222222222221222 24455666677777543 566666666655555
Q ss_pred HHHHHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 009977 326 QEAKEVFDEMKNF----L----------LKPDT--IGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGL 389 (521)
Q Consensus 326 ~~A~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 389 (521)
+-..+++...... + -.|.. .++..+...|-..|++++|++++++.+++.+. .+..|..-...+
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Karil 238 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHH
Confidence 5555555544321 0 12333 34455666777888888888888888887433 356777778888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHh
Q 009977 390 CREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYAT--------SNELLVRLCK 461 (521)
Q Consensus 390 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--------~~~l~~~~~~ 461 (521)
-+.|++.+|.+.++..+..+.. |...-+-.+..+.+.|++++|.+++....+.+..|.... ......+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887655 666667777788888888888888888876655442211 1334567788
Q ss_pred cCCHHHHHHHHHHHH
Q 009977 462 AGMAEDAAIALFGLV 476 (521)
Q Consensus 462 ~g~~~~a~~~~~~~~ 476 (521)
.|++..|++.|....
T Consensus 318 ~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 318 QGDYGLALKRFHAVL 332 (517)
T ss_pred HhhHHHHHHHHHHHH
Confidence 888888877665544
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.9e-09 Score=93.55 Aligned_cols=395 Identities=14% Similarity=0.056 Sum_probs=261.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCch-HHHHHHHHhhhccCCcCHHHHHHHHHHHHc
Q 009977 64 AAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFE-AVDAVLRQMTYETCKFHEGIFLNLMKHFSN 142 (521)
Q Consensus 64 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (521)
..+..|...++-+.|.......+... ...-.+.|+..+.+.|--+ ++.--+.+.+..- +..- ..|.+..+
T Consensus 102 ~~aecy~~~~n~~~Ai~~l~~~p~t~----r~p~inlMla~l~~~g~r~~~~vl~ykevvrec-p~aL----~~i~~ll~ 172 (564)
T KOG1174|consen 102 RAAECYRQIGNTDMAIETLLQVPPTL----RSPRINLMLARLQHHGSRHKEAVLAYKEVIREC-PMAL----QVIEALLE 172 (564)
T ss_pred HHHHHHHHHccchHHHHHHhcCCccc----cchhHHHHHHHHHhccccccHHHHhhhHHHHhc-chHH----HHHHHHHH
Confidence 46777888888888888876653221 2233455555555544222 2222222222211 1111 11111111
Q ss_pred c--CcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHh--cCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCCh
Q 009977 143 C--SLHERVLEMFHKIHPITREKPSLKAISTCLNLLIE--SNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTL 218 (521)
Q Consensus 143 ~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 218 (521)
. .-.+.+.-....+ ...|........+.++++ .++...|...+-.+.....++-|+.....+...+...|+.
T Consensus 173 l~v~g~e~~S~~m~~~----~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn 248 (564)
T KOG1174|consen 173 LGVNGNEINSLVMHAA----TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDY 248 (564)
T ss_pred Hhhcchhhhhhhhhhe----ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCc
Confidence 1 1111111111111 123333333444444433 4555555554444444446777899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 009977 219 ESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIME 298 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 298 (521)
++|...|++....++ -+....-...-.+...|+++....+...+.... ..+...|-.-+......+++..|+.+-+
T Consensus 249 ~~a~~~Fe~~~~~dp--y~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~e 324 (564)
T KOG1174|consen 249 FQAEDIFSSTLCANP--DNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVE 324 (564)
T ss_pred hHHHHHHHHHhhCCh--hhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 999999999887654 344444444556678999999999888887653 3344555555566667889999999999
Q ss_pred HHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 009977 299 FMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKAD 378 (521)
Q Consensus 299 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 378 (521)
+.++.. +.+...+..-...+...++.++|.-.|+...... +-+..+|..|+..|...|++.+|.-+-+...+.- ..+
T Consensus 325 K~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~s 401 (564)
T KOG1174|consen 325 KCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNS 401 (564)
T ss_pred HHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcc
Confidence 988765 4566677667788899999999999999988642 2358899999999999999999988777665542 225
Q ss_pred HhHHHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCccC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009977 379 IVTFNIIL-GGLCR-EGKIEEALGMLEKLWYDGIYLN-KASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNEL 455 (521)
Q Consensus 379 ~~~~~~l~-~~~~~-~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 455 (521)
..+...+. ..|.- ...-++|.+++++.+.. .|+ ....+.+...|...|..+.++.++++.+. ..||....+.|
T Consensus 402 A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~L 477 (564)
T KOG1174|consen 402 ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHL 477 (564)
T ss_pred hhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHH
Confidence 55665553 33332 23457888888888765 444 34566777888899999999999999884 57899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009977 456 LVRLCKAGMAEDAAIALFGLVEMGFKPES 484 (521)
Q Consensus 456 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 484 (521)
.+.+.....+++|...|..++..+ |..
T Consensus 478 gd~~~A~Ne~Q~am~~y~~ALr~d--P~~ 504 (564)
T KOG1174|consen 478 GDIMRAQNEPQKAMEYYYKALRQD--PKS 504 (564)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC--ccc
Confidence 999999999999999999888763 544
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.50 E-value=4.1e-09 Score=97.95 Aligned_cols=421 Identities=16% Similarity=0.117 Sum_probs=248.9
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHH
Q 009977 69 IKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHER 148 (521)
Q Consensus 69 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 148 (521)
+...|+-++|.......++.+ ..+.+.|..+.-.+....++++|++.|......+ +.+...+..+.-.-++.|+++-
T Consensus 51 L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhh
Confidence 556678888888877764322 4466778877777777788888888888888765 5566777777777777788887
Q ss_pred HHHHHHhhccccCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHH------HHHHHhcCChHHH
Q 009977 149 VLEMFHKIHPITREKPS-LKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNIL------IKHHCKRGTLESA 221 (521)
Q Consensus 149 a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~g~~~~A 221 (521)
....-.++.+ ..|+ ...|.....++.-.|++..|..+++...+...-.|+...+... .....+.|.+++|
T Consensus 128 ~~~tr~~LLq---l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~a 204 (700)
T KOG1156|consen 128 YLETRNQLLQ---LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKA 204 (700)
T ss_pred HHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 7777666642 2333 3346667777777888888888888876654334554443322 3345567777888
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-hCCCHHHHH-HHHHH
Q 009977 222 FEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFC-RGGKVDRAK-KIMEF 299 (521)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~-~~~~~ 299 (521)
++.+......-. .....-..-...+.+.++.++|..+|..++.+ .||...|......+. +..+.-++. .+|..
T Consensus 205 le~L~~~e~~i~--Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r---nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ 279 (700)
T KOG1156|consen 205 LEHLLDNEKQIV--DKLAFEETKADLLMKLGQLEEAVKVYRRLLER---NPDNLDYYEGLEKALGKIKDMLEALKALYAI 279 (700)
T ss_pred HHHHHhhhhHHH--HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh---CchhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 777765543321 22233345566778888888888888888876 355555544444333 333333333 55555
Q ss_pred HHHcCCCCCcchHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------
Q 009977 300 MKNNGCNPNVFNYTTL-MNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMK------- 371 (521)
Q Consensus 300 ~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------- 371 (521)
..+. .|....-..+ +.......-.+..-.++....+.|+.+- +..+...|-.-...+ +++++.
T Consensus 280 ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~----~le~Lvt~y~~~L 350 (700)
T KOG1156|consen 280 LSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVA----FLEKLVTSYQHSL 350 (700)
T ss_pred Hhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhH----HHHHHHHHHHhhc
Confidence 5443 2221111111 1111112223333445555566555432 222222222111111 222211
Q ss_pred -HcC----------CCCcHhH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCccC-HHHHHHHHHHHHcCCCHHHHHHHH
Q 009977 372 -ERG----------CKADIVT--FNIILGGLCREGKIEEALGMLEKLWYDGIYLN-KASYRIVLNFSCQKGELEKAIELL 437 (521)
Q Consensus 372 -~~~----------~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~ 437 (521)
..| -+|.... +..++..+-+.|+++.|..+++....+ .|+ +..|..=.+.+...|++++|..++
T Consensus 351 ~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l 428 (700)
T KOG1156|consen 351 SGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWL 428 (700)
T ss_pred ccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 000 1334433 345677778888999999888888776 333 344555567778888999999988
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCH----HHHHH--HHHHHHccCcHHHHHHHHHH
Q 009977 438 RLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFK--PES----DSWAL--LVELICRGRKLLFAFELLDE 509 (521)
Q Consensus 438 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~----~~~~~--l~~~~~~~g~~~~A~~~~~~ 509 (521)
++..+.. .||..+-..-+.-..++.+.++|.++.....+.|.. .+. -.|.. -+++|.++|++.+|++-|..
T Consensus 429 ~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 429 DEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred HHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 8888543 334444334555556788888888888877766531 111 12222 23677788888888877776
Q ss_pred HHH
Q 009977 510 LVI 512 (521)
Q Consensus 510 m~~ 512 (521)
+..
T Consensus 508 i~k 510 (700)
T KOG1156|consen 508 IEK 510 (700)
T ss_pred HHH
Confidence 543
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=4.5e-12 Score=107.29 Aligned_cols=227 Identities=12% Similarity=0.010 Sum_probs=122.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 009977 172 CLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKN 251 (521)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 251 (521)
+.++|.+.|.+.+|...++..++ ..|.+.+|..|.+.|.+..+...|+.+|.+-.+.-| .|+.....+.+.+-..
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~---q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP--~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLT---QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP--FDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhh---cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC--chhhhhhhhHHHHHHH
Confidence 45555566666666655555443 234455566666666666666666666666555443 3444444455555556
Q ss_pred CChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 009977 252 GRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEV 331 (521)
Q Consensus 252 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 331 (521)
++.++|.++|+...+.. +.+......+...|.-.++++.|+.+|+++++.| ..++..|..+.-+|.-.+++|-++.-
T Consensus 304 ~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 66666666666665542 3344444444455555556666666666666665 23555555565555556666666555
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 332 FDEMKNFLLKPD--TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWY 407 (521)
Q Consensus 332 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 407 (521)
|.+....--.|+ ...|-.+....+..||+..|.+.|+-.+..+.. +...++.|.-.-.+.|++++|..++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 555544222222 334444444455555555555555555544332 444555555555555555555555555443
No 70
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=1e-09 Score=94.35 Aligned_cols=390 Identities=15% Similarity=0.098 Sum_probs=231.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHcc
Q 009977 64 AAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNC 143 (521)
Q Consensus 64 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (521)
.+...+...|++++|+..+..+.+.. .++...+..|.-+..-.|.+.+|.++-+...+. +-....++....+.
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~-----pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKT-----PLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCC-----hHHHHHHHHHHHHh
Confidence 35556778899999999999986543 567777878888888889999999887775432 22233344455555
Q ss_pred CcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHH-HHHHHhcCChHHHH
Q 009977 144 SLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNIL-IKHHCKRGTLESAF 222 (521)
Q Consensus 144 g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~ 222 (521)
++-++-...-+.+.. +.+.-..+.......-.+++|.+++..++.. .|+....|.. .-+|.+..-++-+.
T Consensus 135 ndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ey~alNVy~ALCyyKlDYydvsq 205 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NPEYIALNVYMALCYYKLDYYDVSQ 205 (557)
T ss_pred CcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---ChhhhhhHHHHHHHHHhcchhhhHH
Confidence 665555444444321 1122333344444445667777777766542 2443333332 33455566666666
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCC---------------------------------hHHHHHHHHHHHhc
Q 009977 223 EVLKEMKKSQMSYPNLITYSTLIDGLCK--NGR---------------------------------FREAIELFEEMVSK 267 (521)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~---------------------------------~~~A~~~~~~~~~~ 267 (521)
++++--.+.-+ .+....|..+....+ .|+ -+.|++++-.+.+
T Consensus 206 evl~vYL~q~p--dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~- 282 (557)
T KOG3785|consen 206 EVLKVYLRQFP--DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK- 282 (557)
T ss_pred HHHHHHHHhCC--CcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh-
Confidence 66666555443 233333333222222 121 1233333333322
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCC
Q 009977 268 DQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEG-------KLQEAKEVFDEMKNFLL 340 (521)
Q Consensus 268 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~ 340 (521)
+-| ..-..++-.|.+.++..+|..+.+.+. +.++.-|..-.-.+...| ...-|.+.|.-.-+.+.
T Consensus 283 --~IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ 354 (557)
T KOG3785|consen 283 --HIP--EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESAL 354 (557)
T ss_pred --hCh--HhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccc
Confidence 122 233556667889999999998877653 223333322222233333 35567777776655544
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHH-
Q 009977 341 KPD-TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYR- 418 (521)
Q Consensus 341 ~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~- 418 (521)
.-| ...-..+...+.-..++++.+.++..+..--.. |...-..+.++++..|.+.+|.++|-.+....++ |..+|.
T Consensus 355 ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s 432 (557)
T KOG3785|consen 355 ECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKS 432 (557)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHH
Confidence 433 222345556666667889999888887765443 3333345788999999999999999887665555 555665
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 009977 419 IVLNFSCQKGELEKAIELLRLMLCRGFLPHYAT-SNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSW 487 (521)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 487 (521)
.|.++|.+++.++-|+.++-++- -..+..+ +..+...|.+++.+--|.+.|+.+... +|+++-|
T Consensus 433 ~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 433 MLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 55678889999999888765553 2223333 344456788888888888888877665 4555544
No 71
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.47 E-value=9.8e-09 Score=95.29 Aligned_cols=408 Identities=14% Similarity=0.135 Sum_probs=274.5
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhc-cCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHH
Q 009977 95 NATYATILDKLARYKKFEAVDAVLRQMTYE-TCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCL 173 (521)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 173 (521)
+..|...++.+.++|+.-.....|+..+.. .+.....+|.-.+......|-++.++.+|++.. +.++......+
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL-----k~~P~~~eeyi 176 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL-----KVAPEAREEYI 176 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH-----hcCHHHHHHHH
Confidence 346778888889999999999999988754 233345577788888888999999999999986 44556688889
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcC-----CCCCcHHHHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCCHHHHHHHH
Q 009977 174 NLLIESNQVDLAQNFLKYSNQHL-----RLKPNTCIFNILIKHHCKRGTLE---SAFEVLKEMKKSQMSYPNLITYSTLI 245 (521)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~l~ 245 (521)
..++..+++++|.+.+..++... ..+.+...|..+-....+.-+.- ....+++.+...-.. .-...|+.|.
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftD-q~g~Lw~SLA 255 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTD-QLGFLWCSLA 255 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcH-HHHHHHHHHH
Confidence 99999999999999998876421 12334556776666666544432 334455554443221 2246799999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC----------------C------CHHHHHHHHHHHHHc
Q 009977 246 DGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRG----------------G------KVDRAKKIMEFMKNN 303 (521)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~------~~~~a~~~~~~~~~~ 303 (521)
.-|.+.|.+++|.++|++.+.. ..+..-+..+.++|..- + +++-...-|+.+.+.
T Consensus 256 dYYIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 9999999999999999998865 22233333333333321 1 122333344444432
Q ss_pred C-----------CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHH
Q 009977 304 G-----------CNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD------TIGYTTLINCFCRAGRVDEALEL 366 (521)
Q Consensus 304 ~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~ 366 (521)
+ -+.++..|..-+ -+..|+..+-...+.++.+. +.|. ...|..+...|-..|+++.|..+
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 2 012223332222 23356777777888777652 3332 45688899999999999999999
Q ss_pred HHHHHHcCCCCc---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------CCcc-------CHHHHHHHHHHHHc
Q 009977 367 LKEMKERGCKAD---IVTFNIILGGLCREGKIEEALGMLEKLWYD----------GIYL-------NKASYRIVLNFSCQ 426 (521)
Q Consensus 367 ~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~-------~~~~~~~l~~~~~~ 426 (521)
|++..+...+-- ..+|..-...-.++.+++.|+++++.+... |..| +...|..+++.--.
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 999887644311 234555556666788999999998877542 1111 23456666776677
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHc---cCcHHH
Q 009977 427 KGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES-DSWALLVELICR---GRKLLF 502 (521)
Q Consensus 427 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~ 502 (521)
.|-++....+|+++++..+. ++.+.......+....-++++.++|++-...=-.|+. +.|+..+..+.+ .-+.+.
T Consensus 490 ~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 89999999999999976543 4444444555566677789999999876654334554 778877766654 467889
Q ss_pred HHHHHHHHHHcCc
Q 009977 503 AFELLDELVIKES 515 (521)
Q Consensus 503 A~~~~~~m~~~~~ 515 (521)
|..+|+++++.-|
T Consensus 569 aRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 569 ARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999544
No 72
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.43 E-value=2.3e-10 Score=109.55 Aligned_cols=245 Identities=13% Similarity=0.073 Sum_probs=154.9
Q ss_pred cccCCCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHH
Q 009977 53 ARKRSRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGI 132 (521)
Q Consensus 53 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 132 (521)
.+..|+-+||..+|.-|+..|+.+.|- +|.-| +-...+-+...++.++......++.+.+. .|...+
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm-~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFM-EIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhh-hcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 445677788888888888888888887 77777 44455667777888888777777777655 466778
Q ss_pred HHHHHHHHHccCcHHH---HHHHHHhhcc----ccCCCCCHhH-------------HHHHHHHHHhcCCHHHHHHHHHHh
Q 009977 133 FLNLMKHFSNCSLHER---VLEMFHKIHP----ITREKPSLKA-------------ISTCLNLLIESNQVDLAQNFLKYS 192 (521)
Q Consensus 133 ~~~l~~~~~~~g~~~~---a~~~~~~~~~----~~~~~~~~~~-------------~~~ll~~~~~~~~~~~a~~~~~~~ 192 (521)
|..+..+|...||... +.+.++.+.. .+...+.... ...++....-.|-++.+++++..+
T Consensus 86 yt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999888654 3332222211 0101111111 112233333444455555555433
Q ss_pred hhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 009977 193 NQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILP 272 (521)
Q Consensus 193 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 272 (521)
.......|... .++-+... .....++.+....... .++..++..++.+-..+|+.+.|..++.+|.++ |.+.
T Consensus 166 Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~-gfpi 237 (1088)
T KOG4318|consen 166 PVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEK-GFPI 237 (1088)
T ss_pred CcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc-CCCc
Confidence 21111111111 13322222 2223333333222211 389999999999999999999999999999877 6887
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 009977 273 DALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK 321 (521)
Q Consensus 273 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 321 (521)
+..-|-.++-+ .++...++.++..|.+.|+.|+..|+...+..+.+
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 77766666544 78888999999999999999999988766555554
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.43 E-value=4.1e-10 Score=91.18 Aligned_cols=199 Identities=15% Similarity=0.014 Sum_probs=152.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009977 169 ISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGL 248 (521)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 248 (521)
...+.-.|.+.|+...|..-++++++. .+.+..+|..+...|.+.|+.+.|.+.|++..+..+ .+..+.|..+..+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p--~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP--NNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC--CccchhhhhhHHH
Confidence 344556677778888888888877652 233456888888888888888888888888888776 5777788888888
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH
Q 009977 249 CKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEA 328 (521)
Q Consensus 249 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 328 (521)
|..|++++|...|++.........-..+|..+.-+..+.|+++.|...|++.++.. +..+.+...+.....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 88888888888888887764444445678888888888888888888888888875 45566777888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009977 329 KEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKER 373 (521)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 373 (521)
...++.....+. ++..+.-..|..-...|+.+.+-+.=.++...
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888888777554 67777666677777788888877766666554
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=1.5e-08 Score=93.34 Aligned_cols=227 Identities=11% Similarity=0.045 Sum_probs=136.9
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCc
Q 009977 66 ISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSL 145 (521)
Q Consensus 66 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (521)
++.+..++++++|++...+++.. .+.|...+..=+-++...++|++|..+.+.-... ......+..-..+..+.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHccc
Confidence 44566789999999999998633 3556667778888899999999999776654321 1111111233344557899
Q ss_pred HHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHH
Q 009977 146 HERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVL 225 (521)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 225 (521)
.++|+..++-.. ..+..+...-...+.+.|++++|..+|+.+.++..-.-+...-..++..-.. -.+. +.
T Consensus 95 ~Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~ 164 (652)
T KOG2376|consen 95 LDEALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LL 164 (652)
T ss_pred HHHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HH
Confidence 999999998442 3445566777888999999999999999997642222222222222221110 1111 12
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC------CCC--CCHH-----HHHHHHHHHHhCCCHHH
Q 009977 226 KEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKD------QIL--PDAL-----TYNVLIDGFCRGGKVDR 292 (521)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~--~~~~-----~~~~l~~~~~~~~~~~~ 292 (521)
+.... .+. .+-..+-.....+...|++.+|+++++...... +-. -+.. .-.-+.-++...|+-.+
T Consensus 165 q~v~~-v~e-~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 165 QSVPE-VPE-DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HhccC-CCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 22111 110 122223334456777899999999998882210 000 1111 12234445667899999
Q ss_pred HHHHHHHHHHcCCCCCc
Q 009977 293 AKKIMEFMKNNGCNPNV 309 (521)
Q Consensus 293 a~~~~~~~~~~~~~~~~ 309 (521)
|..++...++.. ++|.
T Consensus 243 a~~iy~~~i~~~-~~D~ 258 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADE 258 (652)
T ss_pred HHHHHHHHHHhc-CCCc
Confidence 999998888876 4443
No 75
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.4e-09 Score=96.43 Aligned_cols=416 Identities=11% Similarity=0.036 Sum_probs=223.8
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcH
Q 009977 67 SLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLH 146 (521)
Q Consensus 67 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (521)
.+....|+++.|+..|..++... ++|.+.|+.-..+|+..|++++|.+=-.+-.+.+ |.-...|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccH
Confidence 45567899999999999987665 6688899999999999999999988877777665 44466888999999999999
Q ss_pred HHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCC-hHHHHHHH
Q 009977 147 ERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGT-LESAFEVL 225 (521)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~ 225 (521)
++|+..|.+-.+ ..+.+...+..+..++...... .+.| -++..|..+..--...+- .+.+....
T Consensus 87 ~eA~~ay~~GL~--~d~~n~~L~~gl~~a~~~~~~~---~~~~----------~~p~~~~~l~~~p~t~~~~~~~~~~~~ 151 (539)
T KOG0548|consen 87 EEAILAYSEGLE--KDPSNKQLKTGLAQAYLEDYAA---DQLF----------TKPYFHEKLANLPLTNYSLSDPAYVKI 151 (539)
T ss_pred HHHHHHHHHHhh--cCCchHHHHHhHHHhhhHHHHh---hhhc----------cCcHHHHHhhcChhhhhhhccHHHHHH
Confidence 999999998753 2344445566666665111100 1111 011111111110000000 01111111
Q ss_pred HHHHhCCCCCCCHHHHH---HHHHHHHhcCChH-HHHHHHHHHHhcCCCCC----------------------CHHHHHH
Q 009977 226 KEMKKSQMSYPNLITYS---TLIDGLCKNGRFR-EAIELFEEMVSKDQILP----------------------DALTYNV 279 (521)
Q Consensus 226 ~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~----------------------~~~~~~~ 279 (521)
-+....++ .+...|. .++.+.......+ .....-..+....+..| -..-...
T Consensus 152 l~~~~~~p--~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 152 LEIIQKNP--TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred HHHhhcCc--HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence 11111111 0111110 0111110000000 00000000000000000 0122455
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------HHH
Q 009977 280 LIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTT-------LIN 352 (521)
Q Consensus 280 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~ 352 (521)
+.++..+..++..|++.+....+.. .+..-++....+|...|.+...........+.|.. ....|+. +..
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhh
Confidence 6677777778888888888777764 45555666777788888777777766665554422 1122222 333
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHH
Q 009977 353 CFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEK 432 (521)
Q Consensus 353 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 432 (521)
+|.+.++++.|+..|.+.......|+.. .+....+++....+.....++.. ..-...-...+.+.|++..
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHH
Confidence 5556677888888887766554333221 12223344444333333322221 1111122445556677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 009977 433 AIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 433 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 512 (521)
|+..|.++++.. +-|...|..-.-+|.+.|.+..|+.-.+...+.. ++....|..=+.++....+|++|.+.|++.++
T Consensus 377 Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777776542 2266666666667777777777766666666552 22234454445555566677777777777777
Q ss_pred cCccC
Q 009977 513 KESGT 517 (521)
Q Consensus 513 ~~~~~ 517 (521)
.+|.+
T Consensus 455 ~dp~~ 459 (539)
T KOG0548|consen 455 LDPSN 459 (539)
T ss_pred cCchh
Confidence 66654
No 76
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=4.7e-09 Score=88.26 Aligned_cols=287 Identities=13% Similarity=0.071 Sum_probs=140.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 009977 214 KRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRA 293 (521)
Q Consensus 214 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 293 (521)
..+++..+..+.++.... .+..+.+...-...+.|++++|.+-|+...+-+|..| ...|+..+ +..+.|+++.|
T Consensus 124 se~Dl~g~rsLveQlp~e----n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasA 197 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSE----NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASA 197 (459)
T ss_pred ccccCcchHHHHHhccCC----CccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHH
Confidence 344444444444443321 2223333333344455555555555555555444443 22333332 22344455555
Q ss_pred HHHHHHHHHcCCCCC----------------------------cchHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH
Q 009977 294 KKIMEFMKNNGCNPN----------------------------VFNYTTLMNGFCKEGKLQEAKEVFDEMKNFL-LKPDT 344 (521)
Q Consensus 294 ~~~~~~~~~~~~~~~----------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 344 (521)
++...+++++|++.. +..++.-...+.+.++++.|.+.+-.|..+. ...|+
T Consensus 198 Lk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDP 277 (459)
T KOG4340|consen 198 LKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDP 277 (459)
T ss_pred HHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCc
Confidence 555555554443211 1233444455678899999998888775322 23456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-ccCHHHHHHHHHH
Q 009977 345 IGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGI-YLNKASYRIVLNF 423 (521)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~ 423 (521)
++...+.-.= ..+++.+..+-+.-+.+..+. ...||..++-.||+..-++.|-+++.+-..... -.+...|+.+=..
T Consensus 278 vTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaL 355 (459)
T KOG4340|consen 278 VTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDAL 355 (459)
T ss_pred hhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHH
Confidence 6665543322 234455555555556665554 457888888899999888888887755322211 1233344433332
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcH
Q 009977 424 SCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGM---AEDAAIALFGLVEMGFKPESDSWALLVELICRGRKL 500 (521)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 500 (521)
..-.-..++|.+-+..+... +.........-+..-....+ ...+.+-+++.++. -..+.....+.|.+..++
T Consensus 356 It~qT~pEea~KKL~~La~~-l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy 430 (459)
T KOG4340|consen 356 ITCQTAPEEAFKKLDGLAGM-LTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDY 430 (459)
T ss_pred HhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhcccccc
Confidence 23345667776665554421 00000000000111111111 11222223332221 112233344566778999
Q ss_pred HHHHHHHHHHHHc
Q 009977 501 LFAFELLDELVIK 513 (521)
Q Consensus 501 ~~A~~~~~~m~~~ 513 (521)
..+.+.|+.-.+-
T Consensus 431 ~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 431 PMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999877664
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.39 E-value=5.5e-10 Score=90.45 Aligned_cols=195 Identities=14% Similarity=0.058 Sum_probs=95.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 009977 277 YNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCR 356 (521)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 356 (521)
..-|.-.|...|+...|.+-+++.++.. +.+..++..+...|.+.|+.+.|.+.|++..+.... +..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 3444445555555555555555555543 334445555555555555555555555555543211 24444555555555
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHH
Q 009977 357 AGRVDEALELLKEMKERGC-KADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIE 435 (521)
Q Consensus 357 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (521)
.|++++|...|++...... .-...+|..+.-+..+.|+.+.|.+.|++.++.... .+.+...+.......|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 5555555555555554311 112334555555555555555555555555554322 23344444444555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 436 LLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGL 475 (521)
Q Consensus 436 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 475 (521)
+++.....+ .++..++.-.|+.-.+.|+.+.+-++=.++
T Consensus 195 ~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 195 YLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 555554432 244554444444445555554444443333
No 78
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.38 E-value=1.2e-08 Score=96.81 Aligned_cols=406 Identities=13% Similarity=-0.005 Sum_probs=267.6
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccC-CcCHHHHHHHH
Q 009977 59 FISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETC-KFHEGIFLNLM 137 (521)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~ 137 (521)
...|..+.-++...|+++.+-+.|++... +.-.....|+.+...+...|.-..|..+++.-..... +++...+....
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 34456666677888999999999998752 2234567799999999999999999999988765432 23344444455
Q ss_pred HHHHc-cCcHHHHHHHHHhhccccCC---CCCHhHHHHHHHHHHhc-----------CCHHHHHHHHHHhhhcCCCCCcH
Q 009977 138 KHFSN-CSLHERVLEMFHKIHPITRE---KPSLKAISTCLNLLIES-----------NQVDLAQNFLKYSNQHLRLKPNT 202 (521)
Q Consensus 138 ~~~~~-~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~ 202 (521)
+.|.+ .+..+++++.-.++....+. .-.+..+..+.-+|... ....++++.++.+.+...-.|
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp-- 478 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP-- 478 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc--
Confidence 55554 47778887776665432111 22233444444444321 123567788888876433334
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 009977 203 CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLID 282 (521)
Q Consensus 203 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (521)
.+...+.--|...++++.|.+..++..+.+.. .+...|..+...+...+++.+|+.+.+......+ .|......-+.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~-~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~--~N~~l~~~~~~ 555 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRG-DSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG--DNHVLMDGKIH 555 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh--hhhhhchhhhh
Confidence 44444555677889999999999999998664 7899999999999999999999999998887532 22222222222
Q ss_pred HHHhCCCHHHHHHHHHHHHHc---------------------C-------CCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 009977 283 GFCRGGKVDRAKKIMEFMKNN---------------------G-------CNPNVFNYTTLMNGFCKEGKLQEAKEVFDE 334 (521)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 334 (521)
.-...++.+++......++.. | ......++..+.......+....-...
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~--- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK--- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---
Confidence 223345555555444333221 0 000111222221111100000000000
Q ss_pred HHhCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 335 MKNFLLK--PD------TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLW 406 (521)
Q Consensus 335 ~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 406 (521)
+...... |+ ...|......+...+..++|...+.+.....+. ....|......+...|..++|.+.|....
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 1111111 22 234556666788889999999888887766432 56677777788888999999999999988
Q ss_pred HCCCccCHHHHHHHHHHHHcCCCHHHHHH--HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 407 YDGIYLNKASYRIVLNFSCQKGELEKAIE--LLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
..++. ++.+..++...+.+.|+..-|.. ++..+++ ++| +...|..+...+.+.|+.++|...|....+.
T Consensus 712 ~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 712 ALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 87544 56788899999999998888877 9999985 566 8999999999999999999999999988764
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.37 E-value=3e-09 Score=95.95 Aligned_cols=218 Identities=15% Similarity=0.084 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHhhhcCCCCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009977 181 QVDLAQNFLKYSNQHLRLKPN--TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAI 258 (521)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 258 (521)
..+.++.-+.+++......|+ ...|..+...|...|++++|...|++..+..+ .+...|+.++..+...|++++|+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP--DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHCCCHHHHH
Confidence 334444444444432222222 34566666667777777777777777766665 45666777777777777777777
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009977 259 ELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNF 338 (521)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 338 (521)
..|++.++.. +-+..++..+..++...|++++|.+.++...+.. |+..........+...++.++|...|.+....
T Consensus 119 ~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 7777776542 3345566666666667777777777777766643 22211112222233455667777766554332
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CC---CcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009977 339 LLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERG---CK---ADIVTFNIILGGLCREGKIEEALGMLEKLWYDG 409 (521)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 409 (521)
..++...+ .+ .....|+..++ ..+..+.+.. +. ....+|..+...+.+.|++++|...|+++...+
T Consensus 195 -~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 -LDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 12222111 11 12223444333 2333332210 00 022355566666666666666666666666543
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.36 E-value=1.8e-09 Score=97.28 Aligned_cols=194 Identities=13% Similarity=0.009 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 009977 276 TYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD-TIGYTTLINCF 354 (521)
Q Consensus 276 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 354 (521)
.|..+...+...|++++|...|++.++.. +.+...|+.+...+...|++++|...|++..+. .|+ ..+|..+..++
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l 142 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 34444445555555555555555555543 334455555555555555555555555555542 222 44445555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHH
Q 009977 355 CRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAI 434 (521)
Q Consensus 355 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 434 (521)
...|++++|++.|+...+..+. +. ........+...++.++|...|.+..... .++...+ .+.. ...|+..++
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~~--~~lg~~~~~- 215 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIVE--FYLGKISEE- 215 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHHH--HHccCCCHH-
Confidence 5555555555555555544321 11 11111111223445555555554433221 1111111 1111 122333222
Q ss_pred HHHHHHHHC---C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009977 435 ELLRLMLCR---G--FLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMG 479 (521)
Q Consensus 435 ~~~~~~~~~---~--~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 479 (521)
..++.+.+. . +.| ....|..+...+.+.|++++|...|++..+.+
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 122222211 0 011 23455566666666666666666666666554
No 81
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.36 E-value=3.1e-08 Score=85.12 Aligned_cols=194 Identities=13% Similarity=0.074 Sum_probs=134.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 009977 244 LIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEG 323 (521)
Q Consensus 244 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 323 (521)
.+..+...|+...|+.....+++. .+-|...+..-..+|...|++..|+.-++...+.. ..+..++..+...+...|
T Consensus 161 ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vg 237 (504)
T KOG0624|consen 161 QLKSASGSGDCQNAIEMITHLLEI--QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVG 237 (504)
T ss_pred HHHHHhcCCchhhHHHHHHHHHhc--CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhh
Confidence 445566788999999999998876 36678888888899999999999988888877765 456777778888889999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHH----HHH-------H--HHHHHhcCCHHHHHHHHHHHHHcCCCCcHh---HHHHHHH
Q 009977 324 KLQEAKEVFDEMKNFLLKPDTIG----YTT-------L--INCFCRAGRVDEALELLKEMKERGCKADIV---TFNIILG 387 (521)
Q Consensus 324 ~~~~A~~~~~~~~~~~~~~~~~~----~~~-------l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~ 387 (521)
+.+.++...++..+ +.||-.. |.. + +......++|.++++-.+...+..+..... .+..+..
T Consensus 238 d~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 238 DAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred hHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeee
Confidence 99999988888876 3455322 111 1 112344566777777777666654332222 2334455
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 009977 388 GLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCR 443 (521)
Q Consensus 388 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (521)
++...|++.+|++.-.+++..... |..++.--..+|.....++.|+.-|+.+.+.
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 556667777777777777765322 4666777777777777778888877777743
No 82
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=1.2e-09 Score=102.59 Aligned_cols=236 Identities=18% Similarity=0.136 Sum_probs=143.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC-CCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CC
Q 009977 276 TYNVLIDGFCRGGKVDRAKKIMEFMKNN-----GC-NPNVF-NYTTLMNGFCKEGKLQEAKEVFDEMKNF-----LL-KP 342 (521)
Q Consensus 276 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~ 342 (521)
+...+...|...|++++|+.+++..++. |. .|... ..+.+...|...+++++|..+|+++... |. .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3344555555555555555555554432 10 11111 1223556666667777776666665431 11 11
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CcH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCc
Q 009977 343 D-TIGYTTLINCFCRAGRVDEALELLKEMKER-----GCK-ADI-VTFNIILGGLCREGKIEEALGMLEKLWYD---GIY 411 (521)
Q Consensus 343 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~-~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~ 411 (521)
. ..+++.|..+|.+.|++++|...+++..+. +.. |.. ..++.++..|...+++++|..++++..+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1 345566666677777777776666655432 111 111 23556667777788888888887766542 111
Q ss_pred c----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 009977 412 L----NKASYRIVLNFSCQKGELEKAIELLRLMLCR------GFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVE--- 477 (521)
Q Consensus 412 ~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--- 477 (521)
+ -..+++.|...|...|++++|.+++++++.. +..+ ....++.+...|.+.+.+++|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 1 2346778888888888888888888887742 1122 345567788888888888888888876543
Q ss_pred -CCC-CCCH-HHHHHHHHHHHccCcHHHHHHHHHHHH
Q 009977 478 -MGF-KPES-DSWALLVELICRGRKLLFAFELLDELV 511 (521)
Q Consensus 478 -~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 511 (521)
.|. .|+. .+|..|+..|.+.|++++|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 332 2333 678888999999999999998888776
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=5.5e-10 Score=104.87 Aligned_cols=250 Identities=18% Similarity=0.123 Sum_probs=175.2
Q ss_pred hhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccc-----cCCCCCHhH-HHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 009977 122 TYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPI-----TREKPSLKA-ISTCLNLLIESNQVDLAQNFLKYSNQH 195 (521)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~ 195 (521)
...+.|.-..+...+...|...|++++|+.++++.... +-..|...+ ...+...|...+++++|..+|+.++.-
T Consensus 191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI 270 (508)
T ss_pred cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 33444555556667888899999999998888876532 112444443 334677888889999888888887641
Q ss_pred ----CC-CCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHH
Q 009977 196 ----LR-LKPN-TCIFNILIKHHCKRGTLESAFEVLKEMKK-----SQMSYPNLI-TYSTLIDGLCKNGRFREAIELFEE 263 (521)
Q Consensus 196 ----~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 263 (521)
.| ..|. ..+++.|..+|.+.|++++|...+++..+ .+...+.+. .++.++..+...+++++|..++++
T Consensus 271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 12 2233 34788888899999999888877776532 122223333 356677788889999999998887
Q ss_pred HHhcCC--CCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------CCCCcchHHHHHHHHHhcCCHHHHHH
Q 009977 264 MVSKDQ--ILP----DALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG-------CNPNVFNYTTLMNGFCKEGKLQEAKE 330 (521)
Q Consensus 264 ~~~~~~--~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~ 330 (521)
..+... ..+ -..+++.|...|...|++++|.++++.++... .......++.+...|.+.+.+.+|.+
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 654311 222 24678999999999999999999998887531 11223456778888999999999998
Q ss_pred HHHHHHh----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 331 VFDEMKN----FLL-KPD-TIGYTTLINCFCRAGRVDEALELLKEMK 371 (521)
Q Consensus 331 ~~~~~~~----~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 371 (521)
+|.+... .|. .|+ ..+|..|...|.+.|+++.|+++.+...
T Consensus 431 l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 431 LFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 8876432 222 233 5778899999999999999999888765
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.33 E-value=4.4e-08 Score=91.98 Aligned_cols=94 Identities=13% Similarity=0.166 Sum_probs=49.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH--HHHHHHHHH
Q 009977 277 YNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK-PDT--IGYTTLINC 353 (521)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~ 353 (521)
...+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++....... ++. ..|..+...
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 3344445555666666666666665543 334445555555666666666666666555442211 111 223345555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 009977 354 FCRAGRVDEALELLKEMK 371 (521)
Q Consensus 354 ~~~~~~~~~A~~~~~~~~ 371 (521)
+...|++++|..++++..
T Consensus 196 ~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 196 YLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHCCCHHHHHHHHHHHh
Confidence 556666666666666554
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.31 E-value=3.9e-08 Score=92.35 Aligned_cols=307 Identities=12% Similarity=0.033 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNL-ITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVL 280 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 280 (521)
...|..+...+...|+.+.+.+.+....+..+...+. .........+...|++++|.+++++..+.. |.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-
Confidence 4467777777777888888777777766554422232 223333456677899999999999988763 445544442
Q ss_pred HHHHHh----CCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 009977 281 IDGFCR----GGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCR 356 (521)
Q Consensus 281 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 356 (521)
...+.. .+..+.+.+.+.... ...+........+...+...|++++|...+++..+... .+...+..+...+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~ 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEM 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHH
Confidence 223333 344455555554411 11122233444566788999999999999999988542 246778888899999
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CcH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-ccCHHHH-H--HHHHHHHcCCC
Q 009977 357 AGRVDEALELLKEMKERGCK-ADI--VTFNIILGGLCREGKIEEALGMLEKLWYDGI-YLNKASY-R--IVLNFSCQKGE 429 (521)
Q Consensus 357 ~~~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~ 429 (521)
.|++++|...+++....... ++. ..|..+...+...|++++|..+++++..... .+..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 99999999999998875432 222 3455788889999999999999999864422 1111111 1 22333333443
Q ss_pred HHHHHHH--HHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------C--CHHHHHHHHHHHHcc
Q 009977 430 LEKAIEL--LRLMLCRGFLP--HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFK------P--ESDSWALLVELICRG 497 (521)
Q Consensus 430 ~~~a~~~--~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~~ 497 (521)
.+.+.+. +.......... ..........++...|+.++|...++.+...... . ..........++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3322222 11111111111 1122234667778899999999999988753211 0 112222333455689
Q ss_pred CcHHHHHHHHHHHHHc
Q 009977 498 RKLLFAFELLDELVIK 513 (521)
Q Consensus 498 g~~~~A~~~~~~m~~~ 513 (521)
|++++|.+.+.+.+..
T Consensus 321 g~~~~A~~~L~~al~~ 336 (355)
T cd05804 321 GNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988764
No 86
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.28 E-value=2.5e-09 Score=102.67 Aligned_cols=274 Identities=15% Similarity=0.161 Sum_probs=200.4
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhcccc
Q 009977 81 IFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPIT 160 (521)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 160 (521)
++-.+ +..|+.|+.+||..+|.-|+..|+.+.|- +|.-|.....+.+...+..++....+.++.+.+.
T Consensus 12 fla~~-e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 12 FLALH-EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred HHHHH-HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 33444 56799999999999999999999999888 9999988888888899999999988888765443
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHH
Q 009977 161 REKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLIT 240 (521)
Q Consensus 161 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 240 (521)
.|.+.+|..+..+|...||+.. |+...+ ....+...+...|.-.....++..+.-.+...||..
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~----fe~veq---------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~- 143 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL----FEVVEQ---------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE- 143 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH----HHHHHH---------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH-
Confidence 6788899999999999999876 222211 123345566677777777777766543322124433
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 009977 241 YSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGG-KVDRAKKIMEFMKNNGCNPNVFNYTTLMNGF 319 (521)
Q Consensus 241 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (521)
+.+....-.|-++.+++++..+.......|... +++-+.... .+++-..+.....+ .++..+|..++..-
T Consensus 144 --n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~a 214 (1088)
T KOG4318|consen 144 --NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRA 214 (1088)
T ss_pred --HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHH
Confidence 344455667888888888877654322222222 233333322 33333333333332 58999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 009977 320 CKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGK 394 (521)
Q Consensus 320 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 394 (521)
...|+.+.|..++.+|.+.|+..+..-|-.++.+ .++...+..+++.|.+.|+.|+..|+...+..+..+|.
T Consensus 215 laag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 215 LAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999999999999999988887766666554 78888999999999999999999999988888887655
No 87
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.27 E-value=1.3e-07 Score=100.39 Aligned_cols=373 Identities=14% Similarity=0.049 Sum_probs=229.1
Q ss_pred HHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcC
Q 009977 137 MKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRG 216 (521)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 216 (521)
...+...|++.+|...+..... ...-..............|+++.+..+++.+... ....++.........+...|
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~-~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGD---AQLLRDILLQHGWSLFNQGELSLLEECLNALPWE-VLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHH-HHhcCcchHHHHHHHHHHCC
Confidence 3344555666666665554421 0000111222234455678888777777655211 11122223344555667889
Q ss_pred ChHHHHHHHHHHHhCCCC-----CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHH
Q 009977 217 TLESAFEVLKEMKKSQMS-----YPN--LITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD----ALTYNVLIDGFC 285 (521)
Q Consensus 217 ~~~~A~~~~~~~~~~~~~-----~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~ 285 (521)
++++|...+......-.. .+. ......+...+...|++++|...+++...... ..+ ....+.+...+.
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHH
Confidence 999999999887543111 011 12223344566789999999999999876321 112 134466667778
Q ss_pred hCCCHHHHHHHHHHHHHcCC---CCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHH
Q 009977 286 RGGKVDRAKKIMEFMKNNGC---NPN--VFNYTTLMNGFCKEGKLQEAKEVFDEMKNF----LLK--P-DTIGYTTLINC 353 (521)
Q Consensus 286 ~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~ 353 (521)
..|++++|...+.+...... .+. ..+...+...+...|++++|...+++.... +.. + ....+..+...
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 89999999999988875311 111 234456677888999999999998876542 211 1 12334455666
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CccCHH--HH--HHHHHH
Q 009977 354 FCRAGRVDEALELLKEMKER----GCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDG--IYLNKA--SY--RIVLNF 423 (521)
Q Consensus 354 ~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~ 423 (521)
+...|++++|...+.+.... +.......+..+...+...|++++|...++.+.... ...... .. ...+..
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 77789999999998887653 111123345556677888999999999998875431 111111 10 112234
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHH
Q 009977 424 SCQKGELEKAIELLRLMLCRGFLPH---YATSNELLVRLCKAGMAEDAAIALFGLVEM----GFKPES-DSWALLVELIC 495 (521)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~ 495 (521)
+...|+.+.|...+........... ...+..+..++...|++++|...++++.+. |...+. .+...+..++.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 4568999999998877653211111 111345677888999999999999988752 322222 45667778889
Q ss_pred ccCcHHHHHHHHHHHHHcC
Q 009977 496 RGRKLLFAFELLDELVIKE 514 (521)
Q Consensus 496 ~~g~~~~A~~~~~~m~~~~ 514 (521)
+.|+.++|.+.+.++++..
T Consensus 743 ~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 743 QQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999998753
No 88
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.23 E-value=2.2e-07 Score=98.74 Aligned_cols=341 Identities=12% Similarity=0.016 Sum_probs=218.7
Q ss_pred HHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-----CCc--HHHHHHHH
Q 009977 137 MKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRL-----KPN--TCIFNILI 209 (521)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~--~~~~~~l~ 209 (521)
.......|+++.+..+++.+... ....+..........+...|+++++..++..+.+.... .+. ......+.
T Consensus 381 a~~l~~~g~~~~l~~~l~~lp~~-~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a 459 (903)
T PRK04841 381 GWSLFNQGELSLLEECLNALPWE-VLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA 459 (903)
T ss_pred HHHHHhcCChHHHHHHHHhCCHH-HHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence 33455668888887877776421 11122223334455566789999999998877542211 111 22333445
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CCCCHHHHHHHH
Q 009977 210 KHHCKRGTLESAFEVLKEMKKSQMSYPNL----ITYSTLIDGLCKNGRFREAIELFEEMVSKDQ----ILPDALTYNVLI 281 (521)
Q Consensus 210 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~ 281 (521)
..+...|++++|...+++....... .+. ...+.+...+...|++++|...+++...... ......++..+.
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPL-TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 6677899999999999998764221 222 3446677778889999999999988865311 111123456667
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc----CCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC--HHHHHHH
Q 009977 282 DGFCRGGKVDRAKKIMEFMKNN----GCNP---NVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFL--LKPD--TIGYTTL 350 (521)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~--~~~~~~l 350 (521)
..+...|+++.|...+++.... +... ....+..+...+...|++++|...+++..... ..+. ...+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 7888999999999998877652 2111 12234456667788899999999998775421 1122 3344456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-cHhHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCccCH---HHHHHHH
Q 009977 351 INCFCRAGRVDEALELLKEMKERGCKA-DIVTF-----NIILGGLCREGKIEEALGMLEKLWYDGIYLNK---ASYRIVL 421 (521)
Q Consensus 351 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~ 421 (521)
...+...|++++|...+.......... ....+ ...+..+...|+.+.|..++............ ..+..+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 667788999999999998875431110 11111 11224455688999999988776543211111 1134566
Q ss_pred HHHHcCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009977 422 NFSCQKGELEKAIELLRLMLCR----GFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMG 479 (521)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 479 (521)
.++...|++++|...++++... |..+ ...+...+..++.+.|+.++|...+.++++..
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7788899999999999988753 3222 23455667778889999999999999998753
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.23 E-value=1.5e-07 Score=80.98 Aligned_cols=199 Identities=12% Similarity=0.060 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCH-HHHHHHHH
Q 009977 168 AISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNL-ITYSTLID 246 (521)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~ 246 (521)
-...+...+...|++..|+..|..+++ +.+.+-.++..-...|...|+-..|+.=+.+..+.. ||- ..-..-..
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve--~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK---pDF~~ARiQRg~ 114 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVE--GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK---PDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHc--CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC---ccHHHHHHHhch
Confidence 344455666666666666666666543 222222233444556666666666666666666543 232 12222344
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCC-CHHH------------HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHH
Q 009977 247 GLCKNGRFREAIELFEEMVSKDQILP-DALT------------YNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYT 313 (521)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 313 (521)
.+.+.|.+++|..-|+.++......- .... ....+..+...|+...|+.....+++.. +.+...+.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 55666667777666666665421000 0001 1112223334455555555555555543 34444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009977 314 TLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKER 373 (521)
Q Consensus 314 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 373 (521)
.-..+|...|+...|+.=++...+..- .+......+-..+...|+.+.++...++.++.
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 555555555555555554444443211 12333334444445555555555555555443
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=1e-07 Score=80.38 Aligned_cols=395 Identities=12% Similarity=0.060 Sum_probs=245.0
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHH-HHHHH
Q 009977 61 SHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFL-NLMKH 139 (521)
Q Consensus 61 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~ 139 (521)
.+++++..+.+..++..|++++..-.++. +.+....+.+..+|.+..++..|...++++-... |...-|. .-...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHH
Confidence 46778888899999999999998765553 4477888899999999999999999999987653 3333332 34556
Q ss_pred HHccCcHHHHHHHHHhhccccCCCCCHh--HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCC
Q 009977 140 FSNCSLHERVLEMFHKIHPITREKPSLK--AISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGT 217 (521)
Q Consensus 140 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 217 (521)
+.+.+.+.+|+++...|.. .++.. ....-.......+++..+..++++... +.+..+.+...-...+.|+
T Consensus 88 LY~A~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~----en~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS----ENEADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHhcccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccC----CCccchhccchheeecccc
Confidence 6788999999999988852 22221 122222344467888889888887631 2355566777777889999
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-------------CCH----------
Q 009977 218 LESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQIL-------------PDA---------- 274 (521)
Q Consensus 218 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~---------- 274 (521)
++.|.+-|+...+-+.- .....|+. .-++.+.|+++.|+++..++++++ +. ||.
T Consensus 160 yEaAvqkFqaAlqvsGy-qpllAYni-ALaHy~~~qyasALk~iSEIieRG-~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGY-QPLLAYNL-ALAHYSSRQYASALKHISEIIERG-IRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred HHHHHHHHHHHHhhcCC-CchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhh-hhcCCccCccceeccCchhcccchHHHH
Confidence 99999999999887663 45566664 456778899999999999998763 21 221
Q ss_pred -----HHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 009977 275 -----LTYNVLIDGFCRGGKVDRAKKIMEFMKNN-GCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYT 348 (521)
Q Consensus 275 -----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 348 (521)
..+|.-...+.+.++++.|.+.+-.|.-+ ....|+.|...+.-.= ..+++-+..+-+.-+.+..+- ...++.
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFA 314 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFA 314 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHH
Confidence 12333344566788999998888777532 1234666666554322 234455555555555554443 367888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc
Q 009977 349 TLINCFCRAGRVDEALELLKEMKERGCK-ADIVTFNIILGGLCR-EGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ 426 (521)
Q Consensus 349 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (521)
.++-.||+..-++-|-+++-+-...... .+...|+ ++.++.. .-..++|++-++.+...-.. .......-+..-..
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~-kLRklAi~vQe~r~ 392 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTE-KLRKLAIQVQEARH 392 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 8889999999999998887653221100 1223333 3334333 34667777666555432000 00111111111111
Q ss_pred CCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 427 KGE---LEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 427 ~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
.++ +..+++-+++.++. . ..+..+-...+.+..++..+.+.|..-.+.
T Consensus 393 ~~dd~a~R~ai~~Yd~~LE~-Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 393 NRDDEAIRKAVNEYDETLEK-Y---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred cccHHHHHHHHHHHHHHHHH-H---HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 121 12223333333322 1 122333445667888899999998876654
No 91
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=1.5e-06 Score=85.25 Aligned_cols=262 Identities=17% Similarity=0.222 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 009977 203 CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLID 282 (521)
Q Consensus 203 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (521)
.+|..+..+-.+.|.+.+|.+-|-+. .|+..|..++....+.|.|++-.+++....++ ...|... ..|+-
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIF 1174 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHH
Confidence 34555555555555555554444321 33444555555555555555555555444333 1223222 34445
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009977 283 GFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDE 362 (521)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 362 (521)
+|++.++..+.++++. -||......+..-|...+.++.|.-+|.. +..|..+...+...|++..
T Consensus 1175 AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHH
Confidence 5555555444333321 24444444455555555555555444443 3345566666666777777
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 009977 363 ALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLC 442 (521)
Q Consensus 363 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (521)
|.+.-++. .+..+|..+..+|...+.+.-| ++...++-....-...++..|-..|.+++.+.+++..+
T Consensus 1239 AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L- 1306 (1666)
T KOG0985|consen 1239 AVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL- 1306 (1666)
T ss_pred HHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh-
Confidence 66544432 1556787777777766554333 23223334455567788888999999999999888877
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCC------CCHHHHHHHHHHHHccCcHHHHH
Q 009977 443 RGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVE-MGFK------PESDSWALLVELICRGRKLLFAF 504 (521)
Q Consensus 443 ~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~------~~~~~~~~l~~~~~~~g~~~~A~ 504 (521)
|+.- +...|..|.-.|++- ++++..+.++-... .+++ .....|..++-.|.+-..++.|.
T Consensus 1307 -GLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1307 -GLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred -chhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 5443 666777777677654 34444444333221 1111 12245667777777666666553
No 92
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=3.5e-07 Score=84.52 Aligned_cols=421 Identities=14% Similarity=0.112 Sum_probs=227.9
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHH
Q 009977 61 SHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHF 140 (521)
Q Consensus 61 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (521)
....-+.++.+.+.+++|+.+.+.-. +...+..-+---+.+..+.+..++|...++... +.+..+...-...+
T Consensus 48 a~~cKvValIq~~ky~~ALk~ikk~~---~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvl 120 (652)
T KOG2376|consen 48 AIRCKVVALIQLDKYEDALKLIKKNG---ALLVINSFFFEKAYCEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVL 120 (652)
T ss_pred hHhhhHhhhhhhhHHHHHHHHHHhcc---hhhhcchhhHHHHHHHHHcccHHHHHHHHhccc----ccchHHHHHHHHHH
Confidence 44555667788899999996655431 111111111233456678999999999998332 22344666677788
Q ss_pred HccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC--cHHHHHHHHHHHHhcCCh
Q 009977 141 SNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKP--NTCIFNILIKHHCKRGTL 218 (521)
Q Consensus 141 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 218 (521)
.+.|++++|+++|+.+.......-+...-..++.+-.. -.+. +.+.. ...| +-..+....-.+...|++
T Consensus 121 Yrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~q~v----~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 121 YRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LLQSV----PEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HHHhc----cCCCcchHHHHHHHHHHHHhcccH
Confidence 89999999999999996322222222222222222111 1111 22222 2222 233444456677889999
Q ss_pred HHHHHHHHHHHhCCCC-----CCC---H-----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH----HHHH
Q 009977 219 ESAFEVLKEMKKSQMS-----YPN---L-----ITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTY----NVLI 281 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~-----~~~---~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~l~ 281 (521)
.+|++++....+.+.. ..+ . .....+...+...|+.++|..+|...+... ++|.... |.++
T Consensus 192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~--~~D~~~~Av~~NNLv 269 (652)
T KOG2376|consen 192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN--PADEPSLAVAVNNLV 269 (652)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc--CCCchHHHHHhcchh
Confidence 9999999988322110 011 1 112345667788999999999999998874 5554322 3333
Q ss_pred HHHHhCCCHH-HHHHHHHHHHH-----------cCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 009977 282 DGFCRGGKVD-RAKKIMEFMKN-----------NGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTT 349 (521)
Q Consensus 282 ~~~~~~~~~~-~a~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 349 (521)
.+-....-++ .++..++.... .........-+.++..| .+..+.+.++...... ..|.. .+..
T Consensus 270 a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~~-~~~~ 344 (652)
T KOG2376|consen 270 ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPG--MSPES-LFPI 344 (652)
T ss_pred hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCchH-HHHH
Confidence 2211111111 11222221111 00000111111222222 3334444444443322 22332 2333
Q ss_pred HHH-HH-HhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCccCHHHHHH
Q 009977 350 LIN-CF-CRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLE--------KLWYDGIYLNKASYRI 419 (521)
Q Consensus 350 l~~-~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~ 419 (521)
++. +. ++...+..|.+++...-+....-........++.....|+++.|.+++. .+.+.+. .+.+...
T Consensus 345 ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~a 422 (652)
T KOG2376|consen 345 LLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGA 422 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHH
Confidence 333 22 2223466777777776655433234455666777788889988888888 3333333 3345556
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009977 420 VLNFSCQKGELEKAIELLRLMLCR--GFLPHYATS----NELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVEL 493 (521)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 493 (521)
+...+.+.++.+.|..++.+++.. .-.+..... ..++..-.+.|.-++|..+++++.+.. ++|..+...++.+
T Consensus 423 iv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a 501 (652)
T KOG2376|consen 423 IVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTA 501 (652)
T ss_pred HHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHH
Confidence 666677777766677776666632 111111222 223333346788888999998888754 5777888888888
Q ss_pred HHccCcHHHHHHHHH
Q 009977 494 ICRGRKLLFAFELLD 508 (521)
Q Consensus 494 ~~~~g~~~~A~~~~~ 508 (521)
|++. +.+.|..+-.
T Consensus 502 ~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 502 YARL-DPEKAESLSK 515 (652)
T ss_pred HHhc-CHHHHHHHhh
Confidence 7764 3355555433
No 93
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=7.9e-11 Score=73.98 Aligned_cols=49 Identities=55% Similarity=1.070 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 009977 342 PDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLC 390 (521)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (521)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444455555555555555555555555555555555555555554443
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=1.1e-06 Score=84.35 Aligned_cols=53 Identities=25% Similarity=0.169 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 464 MAEDAAIALFGLVEMGFKPES----DSWALLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 464 ~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
+..+.++-.+.|++....|+. ..|..|++.+....+|..|-+.+++|..+.|.
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~ 1362 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPN 1362 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCc
Confidence 555566666666665444432 67889999999999999999999999988764
No 95
>PF13041 PPR_2: PPR repeat family
Probab=99.15 E-value=1.4e-10 Score=72.82 Aligned_cols=49 Identities=37% Similarity=0.742 Sum_probs=26.5
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 009977 377 ADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSC 425 (521)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (521)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555543
No 96
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.15 E-value=3.1e-07 Score=89.84 Aligned_cols=187 Identities=10% Similarity=0.025 Sum_probs=119.1
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHH
Q 009977 73 KEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEM 152 (521)
Q Consensus 73 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 152 (521)
++...|+..|-+.++.. +-=...|..|...|...-+...|.+.|++.-+.+ +.+..+...+...|++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 34667777776665442 1123557788888877777788888888877665 44556667788888888888888887
Q ss_pred HHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009977 153 FHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQ 232 (521)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 232 (521)
.-...+......-...|....-.|.+.++...|+.-|+...+ --+.|...|..++.+|..+|.+..|.++|++.....
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 443322111111122233344456667777777777777653 233466788888888888888888888888776654
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 233 MSYPNLITYSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
| .+...---.....+..|.+.+|+..+...+.
T Consensus 627 P--~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 P--LSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred c--HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3 2222222233445667778888777776654
No 97
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=6.1e-09 Score=95.66 Aligned_cols=140 Identities=18% Similarity=0.054 Sum_probs=74.0
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009977 222 FEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMK 301 (521)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 301 (521)
.++|-++....+...|...+..|.-.|.-.|++++|++.|+.++.. -|-|...||.|...++...+..+|+..|.+++
T Consensus 414 ~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL 491 (579)
T KOG1125|consen 414 QELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRAL 491 (579)
T ss_pred HHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHH
Confidence 3334444333332345555555666666666666666666666554 24455566666666666666666666666666
Q ss_pred HcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCCHHHHH
Q 009977 302 NNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFL---------LKPDTIGYTTLINCFCRAGRVDEAL 364 (521)
Q Consensus 302 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~ 364 (521)
+.. |.-+.+...|.-.|...|.+++|.+.|-.++... ..++...|..|=.++.-.++.|.+.
T Consensus 492 qLq-P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 492 QLQ-PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hcC-CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 543 2234455556666666666666666554432210 1122345555555555555555433
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.13 E-value=4.4e-09 Score=93.27 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=8.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 009977 208 LIKHHCKRGTLESAFEVLKEMK 229 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~~~ 229 (521)
.+.+|.+.++++.|.+.++.|.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333333333333333
No 99
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.7e-07 Score=85.71 Aligned_cols=192 Identities=13% Similarity=0.082 Sum_probs=132.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHH-------
Q 009977 312 YTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNI------- 384 (521)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------- 384 (521)
...++++..+..+++.|++-+....+.. -+..-++....+|...|.+.++...-....+.|.. ...-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3456777778888888888888877743 35555677777888888888877777666666533 2233333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 009977 385 ILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHY-ATSNELLVRLCKAG 463 (521)
Q Consensus 385 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 463 (521)
+..+|.+.++++.+..+|.+.......|+. ..+....++++....... -+.|.. .-...-...+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a--~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKA--YINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHH--hhChhHHHHHHHHHHHHHhcc
Confidence 334555667788888888887665333322 223344455555554443 234422 12222367788999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccCc
Q 009977 464 MAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESGTI 518 (521)
Q Consensus 464 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 518 (521)
++..|+..|.+++... +.|...|....-+|.+.|.+..|++-.+..++.+|..+
T Consensus 373 dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~ 426 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFI 426 (539)
T ss_pred CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHH
Confidence 9999999999999875 55668899999999999999999999999999877643
No 100
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.12 E-value=1.4e-07 Score=92.12 Aligned_cols=151 Identities=16% Similarity=0.110 Sum_probs=77.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 009977 288 GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKP-DTIGYTTLINCFCRAGRVDEALEL 366 (521)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 366 (521)
|++.-+...|-+-.... +.+..+|..+.-.+.+..+++.|...|...+.. .| +...|-.........|+.-++..+
T Consensus 830 gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~l 906 (1238)
T KOG1127|consen 830 GNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLIL 906 (1238)
T ss_pred chhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 44444444443333322 334445555555566677777777777776653 23 345555554445556666666666
Q ss_pred HHHH--HH--cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCccCHHHHHHHHHHHHcCCCHHHH
Q 009977 367 LKEM--KE--RGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYD---------GIYLNKASYRIVLNFSCQKGELEKA 433 (521)
Q Consensus 367 ~~~~--~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~a 433 (521)
|..- .. .|--++..-|.........+|+.++-+...+++... +..-+...|.......-+.+.+..|
T Consensus 907 faHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a 986 (1238)
T KOG1127|consen 907 FAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAA 986 (1238)
T ss_pred HHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHH
Confidence 6552 11 122233333333334444556555544433333211 2222445566666666666667777
Q ss_pred HHHHHHHH
Q 009977 434 IELLRLML 441 (521)
Q Consensus 434 ~~~~~~~~ 441 (521)
.+...+.+
T Consensus 987 ~ela~Rli 994 (1238)
T KOG1127|consen 987 LELATRLI 994 (1238)
T ss_pred HHHHHHHH
Confidence 66666654
No 101
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.12 E-value=1.8e-07 Score=88.49 Aligned_cols=75 Identities=15% Similarity=0.021 Sum_probs=36.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 009977 386 LGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMA 465 (521)
Q Consensus 386 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 465 (521)
+..|-+.|..+..+++.++-... .-..|...+..-+...|+.+.|..-|-++- -|.+-++.|...+.|
T Consensus 857 iqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw 924 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELW 924 (1636)
T ss_pred HHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhH
Confidence 34444444444444444332211 112333444555555666666665554442 233445566666666
Q ss_pred HHHHHHH
Q 009977 466 EDAAIAL 472 (521)
Q Consensus 466 ~~a~~~~ 472 (521)
++|.++-
T Consensus 925 ~dayria 931 (1636)
T KOG3616|consen 925 EDAYRIA 931 (1636)
T ss_pred HHHHHHH
Confidence 6665553
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=1.5e-06 Score=83.45 Aligned_cols=394 Identities=14% Similarity=0.096 Sum_probs=214.4
Q ss_pred CCChHHHHHH--HHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhcc--------CCc
Q 009977 59 FISHGAAISL--IKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYET--------CKF 128 (521)
Q Consensus 59 ~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~ 128 (521)
..+...++.. |..-|+.+.|.+-.+.+ .+...|..|.+.|.+.++.+-|.-.+..|.... ...
T Consensus 726 ~~TRkaml~FSfyvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 726 ESTRKAMLDFSFYVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred HHHHHhhhceeEEEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3445555543 55678888887776665 256789999999999998888877776664211 111
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHH
Q 009977 129 HEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNIL 208 (521)
Q Consensus 129 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 208 (521)
+...-..+.-...+.|..++|+.+|.+.. -|..+-..|-..|.+++|.++-+.-- .+.. -.+|...
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ck----------R~DLlNKlyQs~g~w~eA~eiAE~~D---RiHL-r~Tyy~y 864 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCK----------RYDLLNKLYQSQGMWSEAFEIAETKD---RIHL-RNTYYNY 864 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHH----------HHHHHHHHHHhcccHHHHHHHHhhcc---ceeh-hhhHHHH
Confidence 11222334445567899999999998875 35555667778899999998876421 2221 2367777
Q ss_pred HHHHHhcCChHHHHHHHHHH----------HhCCCC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 009977 209 IKHHCKRGTLESAFEVLKEM----------KKSQMS--------YPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQI 270 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~----------~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 270 (521)
...+-..++.+.|++.|++. ....++ ..|...|.=....+-..|+.+.|+.+|..+.+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 77777888899998888763 222210 01222233333334445666666666655432
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----C---CC
Q 009977 271 LPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFL-----L---KP 342 (521)
Q Consensus 271 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~---~~ 342 (521)
|-.++...|-.|+.++|-++-++ . .|......|.+.|-..|++.+|...|-++.... + ..
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~e---s---gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~ 1008 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEE---S---GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM 1008 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHh---c---ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 34455555556677776665543 2 245566667777777788887777776654210 0 00
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHH--------HHHC--CCcc
Q 009977 343 DTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEK--------LWYD--GIYL 412 (521)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--------~~~~--~~~~ 412 (521)
+...+|..+ .....+.-.|-.+|++. |. -+...+..|-+.|.+.+|+++--+ +... ....
T Consensus 1009 ~d~L~nlal--~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~s 1078 (1416)
T KOG3617|consen 1009 KDRLANLAL--MSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGS 1078 (1416)
T ss_pred HHHHHHHHh--hcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCC
Confidence 011111100 11112222333344332 11 112233445566666665543211 1111 2334
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCH----HHH
Q 009977 413 NKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLV-EMGFKPES----DSW 487 (521)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~----~~~ 487 (521)
|+...+.-...++...++++|..++-...+ |...+..|...+ ..-..++-+.|. ..+-.|+. ..+
T Consensus 1079 Dp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vL 1148 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVL 1148 (1416)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHH
Confidence 566666666777777777777777665543 222333333222 222222222222 11112333 345
Q ss_pred HHHHHHHHccCcHHHHHHHHHH
Q 009977 488 ALLVELICRGRKLLFAFELLDE 509 (521)
Q Consensus 488 ~~l~~~~~~~g~~~~A~~~~~~ 509 (521)
..+.+.|.++|.+..|.+=|.+
T Consensus 1149 eqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1149 EQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHhh
Confidence 5666777777877777655543
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=2.5e-08 Score=91.71 Aligned_cols=258 Identities=15% Similarity=0.064 Sum_probs=192.5
Q ss_pred HHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-cHHHHHHHHHHHH
Q 009977 135 NLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKP-NTCIFNILIKHHC 213 (521)
Q Consensus 135 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 213 (521)
....-+.+.|+..+|.-.|+... ...+.+..+|..|.......++-..|+..++++++ +.| +..+...|.-.|.
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAV--kqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~---LdP~NleaLmaLAVSyt 364 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAV--KQDPQHAEAWQKLGITQAENENEQNAISALRRCLE---LDPTNLEALMALAVSYT 364 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHH--hhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh---cCCccHHHHHHHHHHHh
Confidence 34445667888888888888875 34466677888888888888888888888888764 344 5678888888888
Q ss_pred hcCChHHHHHHHHHHHhCCCCCC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 009977 214 KRGTLESAFEVLKEMKKSQMSYP-------NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCR 286 (521)
Q Consensus 214 ~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 286 (521)
..|.-..|++.++......+++. +...-.. ..+.....+....++|-++....+..+|+.....|.-.|.-
T Consensus 365 Neg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred hhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 89988999999888766553210 0000000 12333444566677777776665555788888899889999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 009977 287 GGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD-TIGYTTLINCFCRAGRVDEALE 365 (521)
Q Consensus 287 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~ 365 (521)
.|++++|.+.|+.++... |.|...|+.|...++...+..+|+..|.++++ +.|. +.+...|.-.|...|.+++|.+
T Consensus 443 s~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred chHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 999999999999999876 66788999999999999999999999999998 5677 6677778888999999999999
Q ss_pred HHHHHHHc---------CCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 009977 366 LLKEMKER---------GCKADIVTFNIILGGLCREGKIEEALGML 402 (521)
Q Consensus 366 ~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 402 (521)
.|-..+.. ...++...|..|=.++.-.++.|-+....
T Consensus 520 hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 520 HLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 88776532 12234467777777777777776554443
No 104
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.09 E-value=9.8e-09 Score=91.11 Aligned_cols=252 Identities=17% Similarity=0.122 Sum_probs=158.3
Q ss_pred HHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHH
Q 009977 104 KLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVD 183 (521)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 183 (521)
-+.-.|++..+..-.+ ......+.......-+.++|...|+++.++.-... ...|....+..+...+...++-+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~-----~~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK-----SSSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T-----TSSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc-----CCChhHHHHHHHHHHHhCccchH
Confidence 3344666666665544 22222122233444566677777776655433322 22555555544444443334555
Q ss_pred HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009977 184 LAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEE 263 (521)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 263 (521)
.+..-++..........+.........++...|++++|++++... .+.......+..+.+.++++.|.+.++.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555554433222234444445556777889999999887642 4667777888999999999999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009977 264 MVSKDQILPDALTYNVLIDGFCR----GGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFL 339 (521)
Q Consensus 264 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 339 (521)
|.+. ..|. +...++.++.. .+.+.+|..+|+++.+. ..+++.+.+.++.++...|++++|.+++.+.....
T Consensus 157 ~~~~---~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 157 MQQI---DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHCC---SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHhc---CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 9754 3343 44445555443 34789999999998765 46788888999999999999999999999987654
Q ss_pred CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcC
Q 009977 340 LKPDTIGYTTLINCFCRAGRV-DEALELLKEMKERG 374 (521)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~ 374 (521)
. .+..+...++.+....|+. +.+.+++.++....
T Consensus 232 ~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 232 P-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred c-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 3 2566777777777778887 66777888887763
No 105
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.05 E-value=5.6e-07 Score=85.26 Aligned_cols=192 Identities=22% Similarity=0.281 Sum_probs=98.4
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009977 174 NLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGR 253 (521)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 253 (521)
..+...|+++.|...|-... .....+.+.....+|.+|+.+++.+..+.. -...|..+...|...|+
T Consensus 714 ~hl~~~~q~daainhfiea~----------~~~kaieaai~akew~kai~ildniqdqk~---~s~yy~~iadhyan~~d 780 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEAN----------CLIKAIEAAIGAKEWKKAISILDNIQDQKT---ASGYYGEIADHYANKGD 780 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhh----------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc---ccccchHHHHHhccchh
Confidence 34444555555555543321 122234455556667777777776665432 23345566666777777
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 009977 254 FREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFD 333 (521)
Q Consensus 254 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 333 (521)
++.|.++|.+.- .++..|.+|.+.|+|..|.++-.+.. |.......|..-..-+-+.|++.+|++++-
T Consensus 781 fe~ae~lf~e~~----------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 781 FEIAEELFTEAD----------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHHHHhcc----------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 777777765431 23445566777777777766655443 212333344444455555666666666654
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 009977 334 EMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGML 402 (521)
Q Consensus 334 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 402 (521)
.+.. |+. .+.+|-+.|..+..+++.++-... .-..|...+..-|-..|+...|...|
T Consensus 849 ti~~----p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 849 TIGE----PDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred EccC----chH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHH
Confidence 4332 332 244555555555555544432211 01223344444444455555544444
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.05 E-value=7.3e-08 Score=91.14 Aligned_cols=222 Identities=13% Similarity=0.053 Sum_probs=161.8
Q ss_pred CcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHH
Q 009977 127 KFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFN 206 (521)
Q Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 206 (521)
+|-...-..+...+...|-...|+.+|+++. .|..++.+|...|+..+|..+..+.++ -+||+..|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc 461 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYC 461 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHH
Confidence 4444455567777788888888888888774 677778888888888888888777653 467788888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 009977 207 ILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCR 286 (521)
Q Consensus 207 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 286 (521)
.+++.....--+++|.++.+..-. .+...+.....+.++++++.+.|+.-.+.+ +.-..+|..+..+..+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sa--------rA~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISA--------RAQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQ 531 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhH--------HHHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHH
Confidence 888887777778888888775432 222333333455788888888888777764 3445677778888888
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009977 287 GGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALEL 366 (521)
Q Consensus 287 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 366 (521)
.++++.|.+.|....... +.+...|+.+..+|.+.++..+|...+.+..+.+ .-+...|...+......|.+++|++.
T Consensus 532 lek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred HhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHH
Confidence 888888888888877654 5566788888888888888888888888888765 33455666666677788888888888
Q ss_pred HHHHHHc
Q 009977 367 LKEMKER 373 (521)
Q Consensus 367 ~~~~~~~ 373 (521)
+.++...
T Consensus 610 ~~rll~~ 616 (777)
T KOG1128|consen 610 YHRLLDL 616 (777)
T ss_pred HHHHHHh
Confidence 8877653
No 107
>PLN02789 farnesyltranstransferase
Probab=99.04 E-value=5.3e-07 Score=81.25 Aligned_cols=204 Identities=8% Similarity=0.038 Sum_probs=92.5
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCH--
Q 009977 214 KRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG-RFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKV-- 290 (521)
Q Consensus 214 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 290 (521)
..++.++|+.+++++....+ .+..+|+....++...| ++++++..++++...+ +-+..+|+.....+.+.|..
T Consensus 49 ~~e~serAL~lt~~aI~lnP--~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNP--GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHHcCchhh
Confidence 34455555555555555444 34444444444444444 3455555555555432 23333444433333333331
Q ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC----HHHH
Q 009977 291 DRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRA---GR----VDEA 363 (521)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~----~~~A 363 (521)
+++..+++.+++.. +-+..+|.....++...|+++++++.++++.+.++. +..+|+.....+.+. |. .+++
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 34445555555443 334445555555555555555555555555543322 334444433333222 11 2344
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 009977 364 LELLKEMKERGCKADIVTFNIILGGLCRE----GKIEEALGMLEKLWYDGIYLNKASYRIVLNFSC 425 (521)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (521)
+.+..+++...+. |...|+.+...+... +...+|...+.++...++. +...+..|+..|+
T Consensus 203 l~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~ 266 (320)
T PLN02789 203 LKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHH
Confidence 5555455544333 445555555555442 2234455555554443322 4444555555554
No 108
>PLN02789 farnesyltranstransferase
Probab=99.03 E-value=5.2e-07 Score=81.27 Aligned_cols=213 Identities=11% Similarity=0.068 Sum_probs=114.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 009977 241 YSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGG-KVDRAKKIMEFMKNNGCNPNVFNYTTLMNGF 319 (521)
Q Consensus 241 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (521)
+..+-..+...++.++|+.++.+++... +-+..+|+....++...| ++++++..++++.+.. +.+..+|+....++
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 3344444555667777777777777653 334445555555555555 4677777777776654 44555565555455
Q ss_pred HhcCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc---CC
Q 009977 320 CKEGKL--QEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCRE---GK 394 (521)
Q Consensus 320 ~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~ 394 (521)
.+.|+. +++..+++++.+... .+..+|+....++...|+++++++.++++++.++. +..+|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 555542 455666666665432 24666666666666666777777777777666554 555565555554443 11
Q ss_pred H----HHHHHHHHHHHHCCCccCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009977 395 I----EEALGMLEKLWYDGIYLNKASYRIVLNFSCQK----GELEKAIELLRLMLCRGFLPHYATSNELLVRLC 460 (521)
Q Consensus 395 ~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 460 (521)
. ++.+.+..+++...+. |...|+.+...+... +...+|...+.+..+.+ ..+...+..|++.|+
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 1 3444555455444332 445555555555442 22344555555544321 113334444444444
No 109
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.01 E-value=2e-05 Score=72.55 Aligned_cols=154 Identities=12% Similarity=0.087 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCcc-CHHHHHHHHHHHHcCCCHHHHHHHHH
Q 009977 360 VDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYL-NKASYRIVLNFSCQKGELEKAIELLR 438 (521)
Q Consensus 360 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (521)
.+....+++++...-..--..+|..++..-.+....+.|..+|.++.+.+..+ +...+++++..|+ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44555555555543222123456677777777777888888888888876555 5556666776554 577788888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCcHHHHHHHHHHHHHcCc
Q 009977 439 LMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES--DSWALLVELICRGRKLLFAFELLDELVIKES 515 (521)
Q Consensus 439 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 515 (521)
--++. +..++..-...++-+...++-..+..+|++.+..++.++. ..|..+++--..-|+...+.++-+++...-+
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 76643 3334455566777777888888888888888876555554 6788888877778888888877777665433
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.00 E-value=2.1e-07 Score=88.14 Aligned_cols=220 Identities=14% Similarity=0.059 Sum_probs=164.9
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 009977 271 LPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTL 350 (521)
Q Consensus 271 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 350 (521)
+|-...-..+...+.+.|-...|..+++++. .|...+.+|...|+..+|..+..+..+ -+||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 3333344566677778888888888887664 455678888888888888888887766 36778888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCH
Q 009977 351 INCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGEL 430 (521)
Q Consensus 351 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 430 (521)
.+......-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.++- ...+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhh
Confidence 88777666778888877765432 2222222233468888888888887776432 567788888888888999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 009977 431 EKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDE 509 (521)
Q Consensus 431 ~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 509 (521)
+.|.+.|...+. ..| +...||.+-.+|.+.|+-.+|...+.+..+.+ ..+...|...+....+-|.+++|.+.+.+
T Consensus 536 q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 999999888873 566 67788999999999999999999998888876 45556777777778889999999999888
Q ss_pred HHH
Q 009977 510 LVI 512 (521)
Q Consensus 510 m~~ 512 (521)
+.+
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 876
No 111
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=6.3e-06 Score=81.11 Aligned_cols=323 Identities=18% Similarity=0.228 Sum_probs=218.8
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHH-HHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHH
Q 009977 94 NNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEG-IFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTC 172 (521)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 172 (521)
|+...+..+.++...+-+.+..++++++.-.+...+.. .+..++-.-+-.-+..++.+..+++.. -+.| .+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdn--yDa~------~i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDN--YDAP------DI 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhcc--CCch------hH
Confidence 44445555666666666666666766665443222211 111222222222345555555555531 1122 23
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009977 173 LNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG 252 (521)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 252 (521)
...+..++-+++|..+|++. ..+..+.+.|+. ..+.++.|.+.-++. .....|..+..+-.+.|
T Consensus 1055 a~iai~~~LyEEAF~ifkkf------~~n~~A~~VLie---~i~~ldRA~efAe~~-------n~p~vWsqlakAQL~~~ 1118 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF------DMNVSAIQVLIE---NIGSLDRAYEFAERC-------NEPAVWSQLAKAQLQGG 1118 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh------cccHHHHHHHHH---HhhhHHHHHHHHHhh-------CChHHHHHHHHHHHhcC
Confidence 44556667778888888754 235555555554 456777777766554 34568999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 009977 253 RFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVF 332 (521)
Q Consensus 253 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 332 (521)
...+|++-|-+. .|+..|..+++...+.|.+++-.+++....+....|.. =..|+-+|++.++..+-++++
T Consensus 1119 ~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1119 LVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred chHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh
Confidence 999999887654 25678899999999999999999998888877655544 457888999999888766554
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCcc
Q 009977 333 DEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYL 412 (521)
Q Consensus 333 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 412 (521)
. .|+......+..-|...+.++.|.-+|. +...|..|...+...|++..|.+.-+++.
T Consensus 1190 ~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKAn------ 1247 (1666)
T KOG0985|consen 1190 A-------GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKAN------ 1247 (1666)
T ss_pred c-------CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhcc------
Confidence 3 4777777888888889999998887775 34567888888899999998887665542
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 413 NKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLV 476 (521)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 476 (521)
+..+|..+-.+|...+.+.-| .|-...+.....-+..++.-|...|-+++-+.+++..+
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 567899998888877766543 23322333466677778888888888888888776543
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.94 E-value=1.1e-06 Score=89.07 Aligned_cols=206 Identities=13% Similarity=0.078 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHH
Q 009977 238 LITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD---ALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTT 314 (521)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 314 (521)
...|...|..+...++.++|.++.++++..-++.-. ...|.++++.-..-|.-+...++|+++.+.. ....+|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 344444444444455555555555444432111100 1123333333333344444444444444421 12223444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHhHHHHHHHHHHhcC
Q 009977 315 LMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKA-DIVTFNIILGGLCREG 393 (521)
Q Consensus 315 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 393 (521)
|...|.+.+.+++|.++++.|.+. ..-....|...+..+.+.++-+.|..++.++++.-++- ........+..-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 444444444444444444444432 11233444444444444444444444444444331110 1122222333333444
Q ss_pred CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 009977 394 KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP 447 (521)
Q Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 447 (521)
+.+.+..+|+......++ ....|+.+++.-.++|+.+.+..+|++++..++.|
T Consensus 1615 DaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 444444444444443222 23344444444444444444444444444444333
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.94 E-value=8.4e-07 Score=89.93 Aligned_cols=227 Identities=14% Similarity=0.100 Sum_probs=135.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC---cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009977 168 AISTCLNLLIESNQVDLAQNFLKYSNQHLRLKP---NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTL 244 (521)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 244 (521)
.|-..+....+.++.++|.++.++++..-++.- -...|.++++.-..-|.-+...++|+++.+.. .....|..|
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc---d~~~V~~~L 1536 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC---DAYTVHLKL 1536 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---chHHHHHHH
Confidence 344444444444555555555554443222111 12356666666666666666777777766532 223456667
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CcchHHHHHHHHHhc
Q 009977 245 IDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNP--NVFNYTTLMNGFCKE 322 (521)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 322 (521)
...|.+.+.+++|.++|+.|.++.+ .....|...+..+.+.++-+.|..++.++++.- +. ......-.++.-++.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhhc
Confidence 7777777777777777777776643 445667777777777777777777777766541 11 233444455566677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH--hHHHHHHHHHHhcCCHHHHHH
Q 009977 323 GKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADI--VTFNIILGGLCREGKIEEALG 400 (521)
Q Consensus 323 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~ 400 (521)
|+.+.+..+|+.....-+ .....|+..+.+-.++|+.+.+..+|+++...++.|.. ..|..-+..--..|+-+.+..
T Consensus 1614 GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 777777777777665322 24667777777777777777777777777777655432 345555555555565444443
Q ss_pred H
Q 009977 401 M 401 (521)
Q Consensus 401 ~ 401 (521)
+
T Consensus 1693 V 1693 (1710)
T KOG1070|consen 1693 V 1693 (1710)
T ss_pred H
Confidence 3
No 114
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.89 E-value=7.2e-07 Score=78.17 Aligned_cols=188 Identities=12% Similarity=0.042 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH-HHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN-LITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDA-LTYNV 279 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~ 279 (521)
...+..++..+...|++++|...|+++....+..+. ..++..++.++...|++++|+..++++.+..+-.+.. .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 445555555555666666666666655554432111 1244555555666666666666666665543211211 12333
Q ss_pred HHHHHHhC--------CCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009977 280 LIDGFCRG--------GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLI 351 (521)
Q Consensus 280 l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 351 (521)
+..++... |++++|.+.++.+.+.. +.+......+..... .. ... ......+.
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~------~~~--------~~~~~~~a 173 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LR------NRL--------AGKELYVA 173 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HH------HHH--------HHHHHHHH
Confidence 33344332 45666666666665542 112112211111000 00 000 00011344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCC-C-cHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 352 NCFCRAGRVDEALELLKEMKERGCK-A-DIVTFNIILGGLCREGKIEEALGMLEKLWYD 408 (521)
Q Consensus 352 ~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 408 (521)
..|.+.|++++|+..++...+.... | ....+..++.++...|++++|..+++.+...
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566667777777666666654221 1 2345666666677777777777666665543
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.89 E-value=7e-07 Score=74.49 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=76.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 009977 171 TCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCK 250 (521)
Q Consensus 171 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (521)
.+-..+...|+-+....+...... ..+.|....+.++....+.|++..|...|++.....+ +|...|+.+..+|.+
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p--~d~~~~~~lgaaldq 146 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP--TDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC--CChhhhhHHHHHHHH
Confidence 334444444554444444444321 2223334444455555555555555555555555444 455555555555555
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 009977 251 NGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKE 330 (521)
Q Consensus 251 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 330 (521)
.|++++|..-|.+..+.. +-+...++.+.-.+.-.|+.+.|..++......+ .-+..+-..+.......|+++.|..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 147 LGRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred ccChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHh
Confidence 555555555555555442 2233344555555555555555555555554443 2244444455555555555555555
Q ss_pred HHH
Q 009977 331 VFD 333 (521)
Q Consensus 331 ~~~ 333 (521)
+..
T Consensus 224 i~~ 226 (257)
T COG5010 224 IAV 226 (257)
T ss_pred hcc
Confidence 443
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.89 E-value=5.3e-07 Score=78.99 Aligned_cols=59 Identities=14% Similarity=0.058 Sum_probs=33.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 279 VLIDGFCRGGKVDRAKKIMEFMKNNGC--NPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 279 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
.+...+.+.|++++|...+..+.+... +.....+..++.++.+.|++++|..+++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455666666666666666655420 11234555666666666666666666665554
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.87 E-value=6.2e-07 Score=74.80 Aligned_cols=159 Identities=13% Similarity=0.015 Sum_probs=90.4
Q ss_pred HHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHH
Q 009977 134 LNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHC 213 (521)
Q Consensus 134 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 213 (521)
..+-..+...|+-+....+..... .....+.......+......|++.+|...++++.. .-++|..+|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~--~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSA--IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhh--ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHH
Confidence 444444445555555555544432 22233334444455555666666666666665543 34556666666666666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 009977 214 KRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRA 293 (521)
Q Consensus 214 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 293 (521)
+.|+++.|..-|.+..+..+ .+....+.+...+.-.|+.+.|..++....... .-|...-..+.......|+++.|
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~--~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 146 QLGRFDEARRAYRQALELAP--NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HccChhHHHHHHHHHHHhcc--CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCChHHH
Confidence 66666666666666666554 345556666666666666666666666665431 33455556666666666666666
Q ss_pred HHHHHHH
Q 009977 294 KKIMEFM 300 (521)
Q Consensus 294 ~~~~~~~ 300 (521)
.++...-
T Consensus 222 ~~i~~~e 228 (257)
T COG5010 222 EDIAVQE 228 (257)
T ss_pred Hhhcccc
Confidence 6655443
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=4.8e-06 Score=69.56 Aligned_cols=118 Identities=20% Similarity=0.220 Sum_probs=58.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh--
Q 009977 209 IKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCR-- 286 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 286 (521)
+..|++.|++++|++..... .+......=...+.+..+++-|.+.+++|.+.+ +..|.+-|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id----ed~tLtQLA~awv~la 183 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID----EDATLTQLAQAWVKLA 183 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----hHHHHHHHHHHHHHHh
Confidence 34455555566655555431 222233333334455555555555555554432 33444444444433
Q ss_pred --CCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009977 287 --GGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNF 338 (521)
Q Consensus 287 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 338 (521)
.+.+..|.-+|++|.++ .+|++.+.+-.+.++...|++++|..+++.....
T Consensus 184 ~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred ccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 23455555555555543 2455555555555555555555555555555543
No 119
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1.1e-05 Score=67.50 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 360 VDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYD 408 (521)
Q Consensus 360 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 408 (521)
..+|.-+|++|.++ ..|+..+.+..+.++...|++++|..+++.++..
T Consensus 189 ~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 44444444444332 2234444444444444444444444444444443
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.83 E-value=1e-06 Score=73.87 Aligned_cols=155 Identities=11% Similarity=0.086 Sum_probs=112.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 009977 316 MNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKI 395 (521)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 395 (521)
+..|...|+++......+.+.. |. ..+...++.++++..++...+..+. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 4567888888876554433221 11 0122366778888888888777654 788888888999999999
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHH-HHcCCC--HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 009977 396 EEALGMLEKLWYDGIYLNKASYRIVLNF-SCQKGE--LEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIA 471 (521)
Q Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 471 (521)
++|...+++..+.... +...+..+..+ +...|+ .++|.++++++++. .| +...+..+...+.+.|++++|...
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999988887554 67777777775 356676 58999999998854 45 677788888888899999999999
Q ss_pred HHHHHHCCCCCCHHHH
Q 009977 472 LFGLVEMGFKPESDSW 487 (521)
Q Consensus 472 ~~~~~~~~~~~~~~~~ 487 (521)
|+++++.. +|+..-+
T Consensus 167 ~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 167 WQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHhhC-CCCccHH
Confidence 99988764 4444443
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.81 E-value=1.7e-06 Score=72.58 Aligned_cols=119 Identities=12% Similarity=0.097 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HhcCC--hHH
Q 009977 180 NQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGL-CKNGR--FRE 256 (521)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~ 256 (521)
++.+++...++..++ .-+.+...|..+...|...|++++|...|++..+..+ .+...+..+..++ ...|+ .++
T Consensus 53 ~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P--~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 53 QTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG--ENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred hhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCCCcHH
Confidence 344444444444433 2234455666666666666666666666666655554 3555555555543 44444 356
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009977 257 AIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 257 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (521)
|.+++++..+.+ +.+...+..+...+.+.|++++|+..|+++.+..
T Consensus 129 A~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 666666665542 3344555555555566666666666666665543
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.78 E-value=4.1e-06 Score=84.21 Aligned_cols=239 Identities=13% Similarity=0.103 Sum_probs=148.4
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHH
Q 009977 163 KPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYS 242 (521)
Q Consensus 163 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 242 (521)
+.+...+..++..+...+++++|.++.+...+. .+-....|..++..+.+.++.+++..+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------ 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------------ 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh------------------
Confidence 555567777788777888888888887766542 222233455555566666665544433
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 009977 243 TLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKE 322 (521)
Q Consensus 243 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 322 (521)
.++.......++.-...++..+... .-+...+..++.+|-+.|+.++|..+|+++++.. +.|+.+.+.++..|...
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 2233333344443333444444332 3345577788888888888888888888888876 66778888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 009977 323 GKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGML 402 (521)
Q Consensus 323 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 402 (521)
++++|++++.++... +...+++.++.++|.++....+. +...+ ..+.
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f----------------~~i~ 210 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFF----------------LRIE 210 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHH----------------HHHH
Confidence 888888888777652 55666777888888877776332 22222 2222
Q ss_pred HHHHHC-CCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 009977 403 EKLWYD-GIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLC 460 (521)
Q Consensus 403 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 460 (521)
+++... +..--..++-.+-..|...++++++..+++.+++. .| |......++.+|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH
Confidence 222222 22223344555666677778888888888888853 44 5555555666554
No 123
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.78 E-value=0.00015 Score=67.10 Aligned_cols=438 Identities=13% Similarity=0.096 Sum_probs=253.2
Q ss_pred CCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHH
Q 009977 58 RFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLM 137 (521)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (521)
|+.+|..||.-+..+ ..+++++.++++.. .++..+..|..-+....+.++++..+.+|.+.+..- .+...|...+
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 577999999988777 89999999999864 356778889999999999999999999999988653 3334444333
Q ss_pred HHHHc-cCcH----HHHHHHHHhhccccCC-CCCHhHHHHHHH---------HHHhcCCHHHHHHHHHHhhhcCCCCCcH
Q 009977 138 KHFSN-CSLH----ERVLEMFHKIHPITRE-KPSLKAISTCLN---------LLIESNQVDLAQNFLKYSNQHLRLKPNT 202 (521)
Q Consensus 138 ~~~~~-~g~~----~~a~~~~~~~~~~~~~-~~~~~~~~~ll~---------~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 202 (521)
.--.+ .|+. +...+.|+-.....+. ..+...|...+. -+.++.+++...+++++++... + .+.
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP-m-~nl 171 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP-M-HNL 171 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc-c-ccH
Confidence 32111 1222 3334445444322222 222223443332 2333445667778888776421 1 111
Q ss_pred -HHHHHH------HHHH-------HhcCChHHHHHHHHHHHh--CCCC-----CCC---------HHHHHHHHHHHHhcC
Q 009977 203 -CIFNIL------IKHH-------CKRGTLESAFEVLKEMKK--SQMS-----YPN---------LITYSTLIDGLCKNG 252 (521)
Q Consensus 203 -~~~~~l------~~~~-------~~~g~~~~A~~~~~~~~~--~~~~-----~~~---------~~~~~~l~~~~~~~g 252 (521)
..|+.. ++.. -+...+..|.++++++.. .|.. .|. +..|..+|.--..++
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 122211 1111 123456677777777542 2221 010 112333332211111
Q ss_pred ------C--hHHHHHHHHHHHhcCCCCCCHHHH-----HHHHHHHHhCCC-------HHHHHHHHHHHHHcCCCCCcchH
Q 009977 253 ------R--FREAIELFEEMVSKDQILPDALTY-----NVLIDGFCRGGK-------VDRAKKIMEFMKNNGCNPNVFNY 312 (521)
Q Consensus 253 ------~--~~~A~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~ 312 (521)
. .....-.+++.+.--+..|+.... ....+.+...|+ -+++..++++.+..-...+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011222233322221222322110 111122223333 45666666666543222233333
Q ss_pred HHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHhHHHHHHHH
Q 009977 313 TTLMNGFC---KEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKA-DIVTFNIILGG 388 (521)
Q Consensus 313 ~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 388 (521)
..+...-- +.+..+....+++++.......-..+|..++..-.+..-+..|..+|.++.+.+..+ +....++++.-
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 33332211 112355666677766653222224567778888888888999999999999987776 66677777776
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHH
Q 009977 389 LCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP--HYATSNELLVRLCKAGMAE 466 (521)
Q Consensus 389 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~ 466 (521)
+| .++.+-|.++|+.-++. ..-++.--...+..+...++-..+..+|++.+..++.| ...+|..++.--..-|+..
T Consensus 412 ~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 66 57889999999987765 22244555677888889999999999999999886666 5688999999989999999
Q ss_pred HHHHHHHHHHHC-C--CCCCHHHHHHHHHHHHccCcHHHHH
Q 009977 467 DAAIALFGLVEM-G--FKPESDSWALLVELICRGRKLLFAF 504 (521)
Q Consensus 467 ~a~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~~~~A~ 504 (521)
.+.++-+++... . ..+....-..+++.|.-.+.+..-.
T Consensus 490 si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~ 530 (656)
T KOG1914|consen 490 SILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSL 530 (656)
T ss_pred HHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccH
Confidence 988887776532 1 2333334445566665555554333
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.74 E-value=5.5e-06 Score=82.54 Aligned_cols=160 Identities=11% Similarity=0.034 Sum_probs=121.1
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHH
Q 009977 163 KPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPN-TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITY 241 (521)
Q Consensus 163 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 241 (521)
..+..++..+..+..+.|.+++|..+++.+.+ ..|+ ......++..+.+.+++++|+..+++.....+ .+....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p--~~~~~~ 157 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS--SSAREI 157 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC--CCHHHH
Confidence 44577888888888889999999999988874 4454 55788888888899999999999999888877 577778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 009977 242 STLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK 321 (521)
Q Consensus 242 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 321 (521)
..+..++.+.|++++|+.+|+++... .+-+..++..+..++...|+.++|...|+...+.- .+....|+..+
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~----- 229 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL----- 229 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH-----
Confidence 88888888999999999999998874 24457788888888888999999999998888753 33334444433
Q ss_pred cCCHHHHHHHHHHHH
Q 009977 322 EGKLQEAKEVFDEMK 336 (521)
Q Consensus 322 ~~~~~~A~~~~~~~~ 336 (521)
++...-...++++.
T Consensus 230 -~~~~~~~~~~~~~~ 243 (694)
T PRK15179 230 -VDLNADLAALRRLG 243 (694)
T ss_pred -HHHHHHHHHHHHcC
Confidence 23334444555554
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.74 E-value=5.5e-07 Score=71.37 Aligned_cols=107 Identities=18% Similarity=0.014 Sum_probs=81.7
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 009977 365 ELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRG 444 (521)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (521)
.++++..+. ++..+..+...+...|++++|...|+.+....+. +...|..+..++...|++++|...|+.+.+.
T Consensus 14 ~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l- 87 (144)
T PRK15359 14 DILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALML- 87 (144)
T ss_pred HHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 356666665 3333556677788888888888888888876544 6777888888888888888888888888853
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 445 FLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 445 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
.| +...+..+..++...|++++|...|++.++.
T Consensus 88 -~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 88 -DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred -CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45 7777788888888888888888888888776
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=5e-05 Score=69.40 Aligned_cols=143 Identities=21% Similarity=0.243 Sum_probs=96.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC
Q 009977 208 LIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRG 287 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (521)
..-.+...|++++|+..++.+.+..| .|+..+......+.+.++.++|.+.++++.... +........+..++.+.
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~P--~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~ 387 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQP--DNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhc
Confidence 34445567777777777777776655 466666667777777777777777777777653 22355566677777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009977 288 GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELL 367 (521)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 367 (521)
|++.+|+.+++...... +.|+..|..|.++|...|+..++.....+ .|...|++++|+..+
T Consensus 388 g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l 448 (484)
T COG4783 388 GKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFL 448 (484)
T ss_pred CChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHH
Confidence 77777777777776654 66777777777777777777766554433 334567777777776
Q ss_pred HHHHHc
Q 009977 368 KEMKER 373 (521)
Q Consensus 368 ~~~~~~ 373 (521)
....+.
T Consensus 449 ~~A~~~ 454 (484)
T COG4783 449 MRASQQ 454 (484)
T ss_pred HHHHHh
Confidence 666654
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.73 E-value=1.1e-06 Score=69.65 Aligned_cols=95 Identities=9% Similarity=-0.064 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 009977 205 FNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGF 284 (521)
Q Consensus 205 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 284 (521)
+..+...+...|++++|...|+......+ .+...|..++.++...|++++|+..|++....+ +.+...+..+..++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--p~~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP--WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD--ASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHH
Confidence 33455566666666666666666666555 456666666666666666666666666666542 44555666666666
Q ss_pred HhCCCHHHHHHHHHHHHHc
Q 009977 285 CRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 285 ~~~~~~~~a~~~~~~~~~~ 303 (521)
...|++++|+..|+..++.
T Consensus 103 ~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666654
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.72 E-value=1.4e-05 Score=80.53 Aligned_cols=169 Identities=11% Similarity=0.111 Sum_probs=111.8
Q ss_pred cCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHH
Q 009977 128 FHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNI 207 (521)
Q Consensus 128 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 207 (521)
.....+..|+..|...+++++|.++.+...+..+..+.. |......+.+.++.+.+..+ .
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~--yy~~G~l~~q~~~~~~~~lv------------------~ 88 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA--LYISGILSLSRRPLNDSNLL------------------N 88 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh--HHHHHHHHHhhcchhhhhhh------------------h
Confidence 356688899999999999999999999775433333333 33333366677776555544 2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC
Q 009977 208 LIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRG 287 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (521)
++.......++..+..+.+.+...+ .+..++..++.+|-+.|+.++|..+|+++++.+ +-|+.+.|.+...|...
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~---~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYG---ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhh---hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh
Confidence 2333334444544444444444432 344567778888888888888888888888764 66777788888888777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 288 GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
+.++|++++.++... +...+++.++.++|.++..
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh
Confidence 888888888777654 4445566666666666655
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=1.3e-05 Score=66.58 Aligned_cols=163 Identities=15% Similarity=0.198 Sum_probs=104.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009977 169 ISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGL 248 (521)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 248 (521)
+..++-+....|+.+.|...++.+..++ +.+..+-..-+-.+-..|++++|.++++.+...++ .|..++..-+...
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp--t~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDP--TDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCc--chhHHHHHHHHHH
Confidence 4445555666777777777777765543 33333333333344556777777777777777665 4666666666666
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC---CH
Q 009977 249 CKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEG---KL 325 (521)
Q Consensus 249 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~ 325 (521)
-..|+.-+|++.+.+..+. +..|...|.-+...|...|++++|.-.+++++-.. |.++..+..+...+.-.| +.
T Consensus 131 ka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHH
Confidence 6677777777777777664 56777777777777777777777777777777654 445555555665555444 34
Q ss_pred HHHHHHHHHHHhC
Q 009977 326 QEAKEVFDEMKNF 338 (521)
Q Consensus 326 ~~A~~~~~~~~~~ 338 (521)
+-|.++|.+..+.
T Consensus 208 ~~arkyy~~alkl 220 (289)
T KOG3060|consen 208 ELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHHh
Confidence 5566666666653
No 130
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.70 E-value=0.00042 Score=68.10 Aligned_cols=219 Identities=13% Similarity=0.111 Sum_probs=108.3
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHH--HHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHH
Q 009977 71 CEKEPQCALEIFNTVSEQKGFNHNNATYATILD--KLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHER 148 (521)
Q Consensus 71 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 148 (521)
..+++.+|++..++.+++. |+.. |..++. .+.+.|+.++|..+++.....+. .|..++..+-..|...|++++
T Consensus 21 d~~qfkkal~~~~kllkk~---Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH---PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC---CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhH
Confidence 3456666777776665553 2222 222223 33566777777766666654442 255566666666677777777
Q ss_pred HHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHH----HHHHHHHhhhcCCCCCcHHHHHHHHHHHHhc-CC------
Q 009977 149 VLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDL----AQNFLKYSNQHLRLKPNTCIFNILIKHHCKR-GT------ 217 (521)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~------ 217 (521)
|..+|++.. ...|+......+..+|++.+++.+ |.++++.. +-+...+=.+++.+.+. ..
T Consensus 96 ~~~~Ye~~~---~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~------pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 96 AVHLYERAN---QKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF------PKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred HHHHHHHHH---hhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CcccchHHHHHHHHHHhccCCccccc
Confidence 777777663 335555555666666666665533 33444321 22222222222222221 11
Q ss_pred ---hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHhcCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 009977 218 ---LESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFE-EMVSKDQILPDALTYNVLIDGFCRGGKVDRA 293 (521)
Q Consensus 218 ---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 293 (521)
..-|.+.++.+.+.+....+..-...-...+...|++++|++++. ...+. -...+...-+.-+..+...+++.+.
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHH
Confidence 122444555554443111222222222333445666777776663 22222 1222333334455555666666666
Q ss_pred HHHHHHHHHcC
Q 009977 294 KKIMEFMKNNG 304 (521)
Q Consensus 294 ~~~~~~~~~~~ 304 (521)
.++-.++...|
T Consensus 246 ~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 246 FELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhC
Confidence 66666666655
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.67 E-value=5.3e-06 Score=82.64 Aligned_cols=135 Identities=13% Similarity=0.022 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHH
Q 009977 92 NHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAIST 171 (521)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 171 (521)
+.+...+..|..+..+.|++++|+.+++...+.. |.+...+..++..+.+.+++++|+..+++.. ...+.+......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l--~~~p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYF--SGGSSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHh--hcCCCCHHHHHH
Confidence 4445556666666666666666666666666553 3444555556666666666666666666654 222333444455
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009977 172 CLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKS 231 (521)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 231 (521)
+..++.+.|++++|..+|+++.. ..+.+..++..+...+...|+.++|...|++..+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555566666666666666553 12223455566666666666666666666665543
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=9.6e-05 Score=61.54 Aligned_cols=189 Identities=12% Similarity=0.076 Sum_probs=112.9
Q ss_pred cCChHHHHHHHHHhhhCC--C-CCCCHHH-HHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHH
Q 009977 72 EKEPQCALEIFNTVSEQK--G-FNHNNAT-YATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHE 147 (521)
Q Consensus 72 ~~~~~~A~~~~~~~~~~~--~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 147 (521)
..++++.++++..+.... | ..++..+ |..++-+....|+.+-|...++.+..+- |-+......-.-.+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 356777777777765332 2 3344433 5555556667777788888887776653 323222222222344457777
Q ss_pred HHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009977 148 RVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKE 227 (521)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 227 (521)
+|+++|+.+. ..++.|..++..-+.+.-..|+--+|++-+....+ .+..|...|.-+...|...|++++|.-.+++
T Consensus 104 ~A~e~y~~lL--~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 104 EAIEYYESLL--EDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hHHHHHHHHh--ccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 8888877776 33344455555555555666666666666665554 3556777777777777777777777777777
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhc
Q 009977 228 MKKSQMSYPNLITYSTLIDGLCKNG---RFREAIELFEEMVSK 267 (521)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 267 (521)
+.-..| .+...+..+...+.-.| +..-|.++|.+.++.
T Consensus 180 ~ll~~P--~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 180 LLLIQP--FNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHcCC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 766655 35555555555444433 345566666666654
No 133
>PF12854 PPR_1: PPR repeat
Probab=98.52 E-value=1.5e-07 Score=52.83 Aligned_cols=32 Identities=38% Similarity=0.745 Sum_probs=24.2
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009977 197 RLKPNTCIFNILIKHHCKRGTLESAFEVLKEM 228 (521)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 228 (521)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777766
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.52 E-value=6.5e-06 Score=64.94 Aligned_cols=96 Identities=15% Similarity=0.127 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
....++..+...|++++|.+.|+.+...++ .+...|..+...+...|++++|...+++..... +.+...+..+...
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~ 94 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDP--YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHH
Confidence 344444555555555555555555544443 344455555555555555555555555554431 3334444444555
Q ss_pred HHhCCCHHHHHHHHHHHHHc
Q 009977 284 FCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~ 303 (521)
+...|++++|...|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 55555555555555555443
No 135
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=0.00018 Score=64.19 Aligned_cols=281 Identities=15% Similarity=0.024 Sum_probs=166.7
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccC
Q 009977 65 AISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCS 144 (521)
Q Consensus 65 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 144 (521)
....+.+..++..|+..+..++... +.+..-|..-+..+...|++++|.--.+.-.+.. +-.........+++...+
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALS 131 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhH
Confidence 3445677788999999998887543 4456667777777777888888777666555443 112234445555666666
Q ss_pred cHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHH-HHHHHhcCChHHHHH
Q 009977 145 LHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNIL-IKHHCKRGTLESAFE 223 (521)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~ 223 (521)
+..+|.+.++.-. .+ ....++..++.+.....-+|....+-.+ ..++.-.|++++|.+
T Consensus 132 ~~i~A~~~~~~~~----------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ 190 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQ----------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS 190 (486)
T ss_pred HHHHHHHHhhhhh----------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence 6666666655221 00 1122333333333322233444444444 345566788888888
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHH----------HHHHHHHHHhCCCHHHH
Q 009977 224 VLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALT----------YNVLIDGFCRGGKVDRA 293 (521)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~~~~~~a 293 (521)
+--.+.+.+. .+....-.-..++.-.++.+.|...|++.+..++-..+..+ +..-.+-..+.|++..|
T Consensus 191 ea~~ilkld~--~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 191 EAIDILKLDA--TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHHHHhccc--chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 7777776554 34444333344555677788888888887765322111111 12223345567888888
Q ss_pred HHHHHHHHHcC---CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009977 294 KKIMEFMKNNG---CNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD-TIGYTTLINCFCRAGRVDEALELLKE 369 (521)
Q Consensus 294 ~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 369 (521)
.+.|.+.+... ..++...|.....+..+.|+..+|+.--....+. .+. ...+..-..++...++|++|++-++.
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887643 2334445666666777888888888877777652 211 22333334456667788888888887
Q ss_pred HHHc
Q 009977 370 MKER 373 (521)
Q Consensus 370 ~~~~ 373 (521)
..+.
T Consensus 347 a~q~ 350 (486)
T KOG0550|consen 347 AMQL 350 (486)
T ss_pred HHhh
Confidence 7665
No 136
>PF12854 PPR_1: PPR repeat
Probab=98.49 E-value=2.3e-07 Score=52.13 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHh
Q 009977 90 GFNHNNATYATILDKLARYKKFEAVDAVLRQM 121 (521)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 121 (521)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777888888888888888888888877776
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.46 E-value=1.4e-05 Score=62.97 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 009977 241 YSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFC 320 (521)
Q Consensus 241 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 320 (521)
...++..+...|++++|.+.|+.+...+ +.+...+..+...+...|++++|..+++...+.+ +.+...+..+..+|.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 3344444444455555555554444331 2334444444444444445555555444444433 333444444444444
Q ss_pred hcCCHHHHHHHHHHHHh
Q 009977 321 KEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 321 ~~~~~~~A~~~~~~~~~ 337 (521)
..|++++|...|+...+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 45555555555544444
No 138
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.42 E-value=0.00072 Score=64.55 Aligned_cols=192 Identities=10% Similarity=0.023 Sum_probs=101.1
Q ss_pred ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhc-cCCcCHHHHH------HHHHHHHccCcH
Q 009977 74 EPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYE-TCKFHEGIFL------NLMKHFSNCSLH 146 (521)
Q Consensus 74 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~------~l~~~~~~~g~~ 146 (521)
..++|.++.+. .|.+..|..+.......-.++.|+..|-+.... |++.-..... .-...-+--|.+
T Consensus 678 gledA~qfiEd-------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~f 750 (1189)
T KOG2041|consen 678 GLEDAIQFIED-------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEF 750 (1189)
T ss_pred chHHHHHHHhc-------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcch
Confidence 35666666433 367778877777665555666666666544322 2211000000 001111224788
Q ss_pred HHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 009977 147 ERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLK 226 (521)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 226 (521)
++|.++|-.+.. -...+..+.+.|++-...++++.--.......-..+|+.+...+.....|++|.+.|.
T Consensus 751 eeaek~yld~dr----------rDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 751 EEAEKLYLDADR----------RDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hHhhhhhhccch----------hhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888876642 1234556667778777777776421100011113467777777777777777777776
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 009977 227 EMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIME 298 (521)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 298 (521)
.-.. ....+.++.+...+++-+.+-..+. .+....-.+..++.+.|.-++|.+.|-
T Consensus 821 ~~~~----------~e~~~ecly~le~f~~LE~la~~Lp------e~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 821 YCGD----------TENQIECLYRLELFGELEVLARTLP------EDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred hccc----------hHhHHHHHHHHHhhhhHHHHHHhcC------cccchHHHHHHHHHhhchHHHHHHHHH
Confidence 4321 1124455555555555444444332 233444555566666666666655443
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=0.00011 Score=67.31 Aligned_cols=120 Identities=17% Similarity=0.096 Sum_probs=64.5
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 009977 175 LLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRF 254 (521)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 254 (521)
.+...|++++|+..++.+++ ..+.|+..+......+.+.|+.++|.+.++++....+ .....+..+..++.+.|++
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P--~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDP--NSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CccHHHHHHHHHHHhcCCh
Confidence 34445555666655555553 2333444555555556666666666666666555543 2244455555566666666
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009977 255 REAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFM 300 (521)
Q Consensus 255 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 300 (521)
.+|+.+++..... .+.|+..|..|..+|...|+..++.....+.
T Consensus 391 ~eai~~L~~~~~~--~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 391 QEAIRILNRYLFN--DPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHHHhhc--CCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 6666666555543 2445555555655555555555554444333
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.40 E-value=0.003 Score=62.43 Aligned_cols=201 Identities=12% Similarity=0.091 Sum_probs=133.5
Q ss_pred ChHHHHHHH--HhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHH
Q 009977 61 SHGAAISLI--KCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMK 138 (521)
Q Consensus 61 ~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (521)
.+..++.++ .+.|..++|..+++.. ...+ ..|..|...+-.+|.+.++.++|..+|+...... |+......+..
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~-~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFm 118 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEAL-YGLK-GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFM 118 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhh-ccCC-CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHH
Confidence 555666664 5789999999888875 3332 3488899999999999999999999999999764 55888888999
Q ss_pred HHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcC----------CHHHHHHHHHHhhhcCCCCCcHHHHHHH
Q 009977 139 HFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESN----------QVDLAQNFLKYSNQHLRLKPNTCIFNIL 208 (521)
Q Consensus 139 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~~l 208 (521)
+|.+.+++.+-.++--++.+. .+.+...+-.++..+.+.. -...|.+..+.+.+..|--.+..-....
T Consensus 119 ayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Ly 196 (932)
T KOG2053|consen 119 AYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILY 196 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHH
Confidence 999988876554443333221 1233344445554444321 1245667777776654311122222233
Q ss_pred HHHHHhcCChHHHHHHHHH-HHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 009977 209 IKHHCKRGTLESAFEVLKE-MKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKD 268 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 268 (521)
...+...|++++|++++.. ..+.-.. .+...-+.-+..+...++|.+..++-.++..++
T Consensus 197 l~iL~~~~k~~eal~~l~~~la~~l~~-~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 197 LLILELQGKYQEALEFLAITLAEKLTS-ANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 4455678889999999844 3333322 455555666777888888998888888888764
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.35 E-value=4e-05 Score=61.03 Aligned_cols=127 Identities=16% Similarity=0.065 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCcc--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 009977 381 TFNIILGGLCREGKIEEALGMLEKLWYDGIYL--NKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPH--YATSNELL 456 (521)
Q Consensus 381 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~ 456 (521)
.|..++..+ ..++...+...++.+......- .......+...+...|++++|...|+.+......|. ......+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444443 3566666666666666653221 112233344566667777777777777776542221 12334456
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 009977 457 VRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDEL 510 (521)
Q Consensus 457 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 510 (521)
..+...|++++|...++..... ......+...+++|.+.|++++|...|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6667777777777777553322 223345556667777777777777777664
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.30 E-value=3.1e-05 Score=71.36 Aligned_cols=124 Identities=16% Similarity=0.153 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009977 169 ISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGL 248 (521)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 248 (521)
...++..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++++.....+ .+..........+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p--~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENP--QDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Confidence 333444444445555555555555432 122 233344555555555555555555554443 3444444445555
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009977 249 CKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMK 301 (521)
Q Consensus 249 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 301 (521)
.+.++++.|+++.+++... .|.+..+|..|..+|.+.|+++.|+..++.+-
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 5555555555555555543 23334455555555555555555555555443
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.29 E-value=3.8e-05 Score=70.84 Aligned_cols=125 Identities=16% Similarity=0.165 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
....|+..+...++++.|.++|+++.+.. |+ ....++..+...++-.+|++++++.+.. .+.|...+......
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD---PE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC---Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 44455666666777777777777777654 23 3344666666777777777777777754 24566666666777
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 284 FCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMK 336 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 336 (521)
+.+.++++.|+++.+++.+.. +.+-.+|..|+.+|.+.|+++.|+..+..+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777887777777764 4445577777778888888887777777654
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.29 E-value=6.3e-05 Score=59.92 Aligned_cols=87 Identities=22% Similarity=0.301 Sum_probs=34.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 009977 208 LIKHHCKRGTLESAFEVLKEMKKSQMSYPNL--ITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFC 285 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 285 (521)
+...+...|++++|...|+.+....+. ++. .....+...+...|++++|+..++.... .......+......|.
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d-~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~---~~~~~~~~~~~Gdi~~ 129 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPD-PELKPLARLRLARILLQQGQYDEALATLQQIPD---EAFKALAAELLGDIYL 129 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC---cchHHHHHHHHHHHHH
Confidence 334444444444444444444443321 111 1222334444444444444444433211 1122233344444444
Q ss_pred hCCCHHHHHHHHH
Q 009977 286 RGGKVDRAKKIME 298 (521)
Q Consensus 286 ~~~~~~~a~~~~~ 298 (521)
+.|++++|...|+
T Consensus 130 ~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 130 AQGDYDEARAAYQ 142 (145)
T ss_pred HCCCHHHHHHHHH
Confidence 4444444444444
No 145
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=0.00018 Score=64.31 Aligned_cols=281 Identities=14% Similarity=0.029 Sum_probs=132.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
........+.+...+.+|+..+....+..+ .++.-|..-+..+...|++++|.--.+.-.+.. +-..........+
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~p--d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~c 126 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCP--DNASYYSNRAATLMMLGRFEEALGDARQSVRLK--DGFSKGQLREGQC 126 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCc--cchhhhchhHHHHHHHHhHhhcccchhhheecC--CCccccccchhhh
Confidence 334445556666667777777777766665 345556666666666666666666555444321 1112233444444
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHH-HHHHHhcCCHH
Q 009977 284 FCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLL-KPDTIGYTTL-INCFCRAGRVD 361 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~ 361 (521)
+...++..+|...++.-. .+ ....|+..++....... .|.-..|..+ ..++.-.|+.+
T Consensus 127 ~~a~~~~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~ 186 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYD 186 (486)
T ss_pred hhhhHHHHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccch
Confidence 444555555554444111 00 00111111111111111 1222223222 22344456666
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHH---HH----------HHHHHcCC
Q 009977 362 EALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYR---IV----------LNFSCQKG 428 (521)
Q Consensus 362 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~l----------~~~~~~~g 428 (521)
+|...--.+++.... +......-..++...++.+.+...|++.+..++ +...-. .. ..-..+.|
T Consensus 187 ~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp--dh~~sk~~~~~~k~le~~k~~gN~~fk~G 263 (486)
T KOG0550|consen 187 EAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDP--DHQKSKSASMMPKKLEVKKERGNDAFKNG 263 (486)
T ss_pred hHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccCh--hhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence 666555555444221 222222222233344556666666665554422 211111 11 11234566
Q ss_pred CHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHH
Q 009977 429 ELEKAIELLRLMLCRGFLP-----HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES-DSWALLVELICRGRKLLF 502 (521)
Q Consensus 429 ~~~~a~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 502 (521)
++.+|.+.|.+.+ ++.| +...|.....+..+.|+.++|+.-.+..++. .+.. ..+..-..++...++|++
T Consensus 264 ~y~~A~E~Yteal--~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 264 NYRKAYECYTEAL--NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred chhHHHHHHHHhh--cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766 3333 4444545555556667777776666665543 1211 233333344455667777
Q ss_pred HHHHHHHHHHcCc
Q 009977 503 AFELLDELVIKES 515 (521)
Q Consensus 503 A~~~~~~m~~~~~ 515 (521)
|.+-++++.+...
T Consensus 340 AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 340 AVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHhhcc
Confidence 7777776666543
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.19 E-value=3.8e-05 Score=58.94 Aligned_cols=99 Identities=17% Similarity=0.047 Sum_probs=42.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHH
Q 009977 419 IVLNFSCQKGELEKAIELLRLMLCRGFL-P-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFK--PESDSWALLVELI 494 (521)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 494 (521)
.++..+...|++++|...|+.+....-. + ....+..+..++.+.|++++|...++++...... .....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3334444445555555555554432100 0 1223333444555555555555555554432100 0123344444455
Q ss_pred HccCcHHHHHHHHHHHHHcCccC
Q 009977 495 CRGRKLLFAFELLDELVIKESGT 517 (521)
Q Consensus 495 ~~~g~~~~A~~~~~~m~~~~~~~ 517 (521)
.+.|+.++|...++++++..|.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCC
Confidence 55555555555555555544443
No 147
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.18 E-value=0.00057 Score=54.16 Aligned_cols=150 Identities=10% Similarity=0.036 Sum_probs=89.0
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHH
Q 009977 68 LIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHE 147 (521)
Q Consensus 68 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 147 (521)
...+.=|++..++-..+... ..|++.....|...+.+.|+..+|...|++...--+..+...+..+.++....+++.
T Consensus 65 a~~q~ldP~R~~Rea~~~~~---~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 65 ALQQKLDPERHLREATEELA---IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred HHHHhcChhHHHHHHHHHHh---hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence 33444455544433332221 245666666777778888888888888887776544556666777777777777787
Q ss_pred HHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHH
Q 009977 148 RVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFE 223 (521)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 223 (521)
.|..+++.+.+......++.....+.+.+...|++..|..-|+.++. .-|+..........+.++|+.+++..
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 77777777754333333334455556666666666666666666653 23444444444455556665555443
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.16 E-value=0.00011 Score=56.43 Aligned_cols=100 Identities=14% Similarity=0.059 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CCHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSY-PNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQIL-PDALTYNVLI 281 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~ 281 (521)
++..++..+.+.|++++|.+.|+.+....+.. .....+..++.++.+.|++++|.+.|+.+....+.. .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 33444455555555555555555555433210 112334445555555555555555555554432111 1123444455
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc
Q 009977 282 DGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
.++.+.|++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555555555555555555554
No 149
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.15 E-value=9.1e-05 Score=57.80 Aligned_cols=98 Identities=8% Similarity=-0.034 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLI 281 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 281 (521)
......+...+...|++++|..+|+.+...++ -+..-|..|..++-..|++++|+..|......+ +.|+..+..+.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp--~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag 110 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA--WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHH
Confidence 34555566667777888888888887777665 566777777777777888888888887777653 45666777777
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc
Q 009977 282 DGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
.++...|+.+.|.+.|+..+..
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777888888888777776654
No 150
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.12 E-value=0.0001 Score=57.51 Aligned_cols=96 Identities=10% Similarity=-0.107 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009977 380 VTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRL 459 (521)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 459 (521)
...-.+...+...|++++|.++|+.+...++. +..-|..|..++-..|++++|+..|..+.... +.++..+..+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 34445556666777888888888777766443 55666777777777788888888887777543 22666677777777
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 009977 460 CKAGMAEDAAIALFGLVE 477 (521)
Q Consensus 460 ~~~g~~~~a~~~~~~~~~ 477 (521)
...|+.+.|.+.|+..+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 778888888777777664
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.09 E-value=0.00033 Score=57.69 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009977 241 YSTLIDGLCKNGRFREAIELFEEMVSKDQILPD-ALTYNVLIDGFCRGGKVDRAKKIMEFMKN 302 (521)
Q Consensus 241 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 302 (521)
+..++..+...|++++|...|++..+....+++ ...+..+...+.+.|++++|...+.+..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444444444444432111111 23344444444444444444444444444
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.09 E-value=0.00025 Score=63.65 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 205 FNILIKHHCKRGTLESAFEVLKEMKK 230 (521)
Q Consensus 205 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 230 (521)
+..++..+.+.|++++|.++|+++..
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444555555555555555555443
No 153
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.08 E-value=0.0019 Score=51.33 Aligned_cols=130 Identities=15% Similarity=0.092 Sum_probs=69.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCc-cCHHHHHH
Q 009977 341 KPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIY-LNKASYRI 419 (521)
Q Consensus 341 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ 419 (521)
.|++..--.|..++...|++.+|...|++....-..-|......+.++....+++..|...++++.+..+. -++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34444444555566666666666666666554433445555556666666666666666666666554210 12233444
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009977 420 VLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIAL 472 (521)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 472 (521)
+...+...|.+.+|...|+.++. ..|+...-......+.+.|+.+++..-+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 55556666666666666666653 3444433333444455555555544433
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.06 E-value=0.00011 Score=53.64 Aligned_cols=97 Identities=15% Similarity=0.075 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 009977 417 YRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICR 496 (521)
Q Consensus 417 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 496 (521)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3444555566677777777777666431 2233555566666667777777777777666543 2333566666677777
Q ss_pred cCcHHHHHHHHHHHHHcCc
Q 009977 497 GRKLLFAFELLDELVIKES 515 (521)
Q Consensus 497 ~g~~~~A~~~~~~m~~~~~ 515 (521)
.|++++|...+++..+.++
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 7777777777777665543
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.03 E-value=1e-05 Score=57.48 Aligned_cols=20 Identities=20% Similarity=0.404 Sum_probs=8.2
Q ss_pred HHHHHHhCCCHHHHHHHHHH
Q 009977 280 LIDGFCRGGKVDRAKKIMEF 299 (521)
Q Consensus 280 l~~~~~~~~~~~~a~~~~~~ 299 (521)
+..++.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444433
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.02 E-value=0.0013 Score=59.15 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=45.8
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc------chH
Q 009977 244 LIDGLCKN-GRFREAIELFEEMVSKDQILPD----ALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNV------FNY 312 (521)
Q Consensus 244 l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~ 312 (521)
+...|... |++++|++.|++..+......+ ..++..++..+.+.|++++|.++|++........+. ..+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 33444455 6677777777666442100001 233455566666777777777777666553222111 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 313 TTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 313 ~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
...+-++...||...|...+++...
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2233345556666666666666554
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.02 E-value=0.00012 Score=53.35 Aligned_cols=90 Identities=24% Similarity=0.255 Sum_probs=38.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC
Q 009977 208 LIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRG 287 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (521)
++..+...|++++|...++++.+..+ .+...+..+...+...|++++|.+.++...... +.+...+..+...+...
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDP--DNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHHH
Confidence 33444444444444444444444332 222334444444444444444444444444321 22223344444444444
Q ss_pred CCHHHHHHHHHHHH
Q 009977 288 GKVDRAKKIMEFMK 301 (521)
Q Consensus 288 ~~~~~a~~~~~~~~ 301 (521)
|+++.|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 44444444444433
No 158
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.01 E-value=0.0096 Score=53.27 Aligned_cols=287 Identities=14% Similarity=0.122 Sum_probs=153.3
Q ss_pred cCcHHHHHHHHHhhccccCCCCCHhHHHHHHHH--HHhcCCHHHHHHHHHHhhhcCCCCCcHHH--HHHHHHHHHhcCCh
Q 009977 143 CSLHERVLEMFHKIHPITREKPSLKAISTCLNL--LIESNQVDLAQNFLKYSNQHLRLKPNTCI--FNILIKHHCKRGTL 218 (521)
Q Consensus 143 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~ 218 (521)
.|+-..|.++-.+-.. ....|...+..++.+ -.-.|+++.|.+-|+.|... |.... ...|.-..-+.|..
T Consensus 97 AGda~lARkmt~~~~~--llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASK--LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHh--hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccH
Confidence 4555555555444321 112233333333322 22356666666666666431 22211 11222223356777
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHH--HHHHHHHHH---hCCCHHHH
Q 009977 219 ESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALT--YNVLIDGFC---RGGKVDRA 293 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~l~~~~~---~~~~~~~a 293 (521)
+.|...-+......+ .-...+...+...+..|+|+.|+++++.-....-+.++..- -..|+.+-. -..+...|
T Consensus 171 eaAr~yAe~Aa~~Ap--~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 171 EAARHYAERAAEKAP--QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred HHHHHHHHHHHhhcc--CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 777777776665544 34456677777777888888888877766544333444321 112222111 12245556
Q ss_pred HHHHHHHHHcCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 294 KKIMEFMKNNGCNPNVF-NYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKE 372 (521)
Q Consensus 294 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 372 (521)
...-.+..+. .|+.. .-..-...+++.|+..++-.+++.+-+....|+ .+ ..|.....-+.++.-+++..+
T Consensus 249 r~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia----~lY~~ar~gdta~dRlkRa~~ 320 (531)
T COG3898 249 RDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IA----LLYVRARSGDTALDRLKRAKK 320 (531)
T ss_pred HHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HH----HHHHHhcCCCcHHHHHHHHHH
Confidence 6555555443 34432 223345677888888888888888776544443 22 223333333333333333322
Q ss_pred c-CCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHCCCCC
Q 009977 373 R-GCKA-DIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ-KGELEKAIELLRLMLCRGFLP 447 (521)
Q Consensus 373 ~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~p 447 (521)
. ..+| +......+..+-...|++..|..--+..... .|....|..|.+.-.. .|+-.++.+.+.+.++..-+|
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 1 1122 4556666777777788887777666655543 5666677777665443 488888888888877654444
No 159
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.01 E-value=0.017 Score=55.74 Aligned_cols=214 Identities=10% Similarity=0.096 Sum_probs=131.4
Q ss_pred chHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHH----------HHHhcC
Q 009977 111 FEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLN----------LLIESN 180 (521)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~----------~~~~~~ 180 (521)
.++|.+..+. .|.+..|..+.......-.++-|...|-+... -+.......+-. .-.--|
T Consensus 679 ledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d----Y~Gik~vkrl~~i~s~~~q~aei~~~~g 748 (1189)
T KOG2041|consen 679 LEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD----YAGIKLVKRLRTIHSKEQQRAEISAFYG 748 (1189)
T ss_pred hHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc----ccchhHHHHhhhhhhHHHHhHhHhhhhc
Confidence 4556555544 46777888777777777778888888877643 333323222222 222358
Q ss_pred CHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009977 181 QVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIEL 260 (521)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 260 (521)
++++|+++|-.+-++ ...+..+.+.|+|-.+.++++.--...-...-...|+.+...+.....|++|.++
T Consensus 749 ~feeaek~yld~drr----------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 749 EFEEAEKLYLDADRR----------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred chhHhhhhhhccchh----------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999888766332 3346778888999877777653211100001245788899999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009977 261 FEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLL 340 (521)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 340 (521)
|..-... ...+.++.+..++++-+.+...+ +.+....-.+.+++.+.|.-++|.+.|-+-..
T Consensus 819 Y~~~~~~----------e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~--- 880 (1189)
T KOG2041|consen 819 YSYCGDT----------ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL--- 880 (1189)
T ss_pred HHhccch----------HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC---
Confidence 8765321 34567777777777766655544 34455566677777777777777776644321
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009977 341 KPDTIGYTTLINCFCRAGRVDEALELLK 368 (521)
Q Consensus 341 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 368 (521)
|. ..+..|...+++.+|.++-+
T Consensus 881 -pk-----aAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 881 -PK-----AAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred -cH-----HHHHHHHHHHHHHHHHHHHH
Confidence 11 22344555555666555544
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.00 E-value=0.0055 Score=53.37 Aligned_cols=66 Identities=8% Similarity=0.078 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhhccCCcCHHH---HHHHHHHHHccCcHHHHHHHHHhhccccCCCCCH
Q 009977 100 TILDKLARYKKFEAVDAVLRQMTYETCKFHEGI---FLNLMKHFSNCSLHERVLEMFHKIHPITREKPSL 166 (521)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 166 (521)
.....+...|++++|.+.|+.+.... |.+... ...++.+|.+.+++++|+..|++.....+..|+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~ 105 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 105 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch
Confidence 34444555667777777777666543 222222 2345566666677777777766665544444443
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.99 E-value=1.8e-05 Score=56.13 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=8.2
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 009977 208 LIKHHCKRGTLESAFEVLKE 227 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~ 227 (521)
++.+|.+.|++++|..++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444433
No 162
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.96 E-value=0.0001 Score=65.74 Aligned_cols=288 Identities=14% Similarity=0.060 Sum_probs=139.7
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHh--hhc--cCC-cCHHHHHHHHH
Q 009977 66 ISLIKCEKEPQCALEIFNTVSEQK--GFNHNNATYATILDKLARYKKFEAVDAVLRQM--TYE--TCK-FHEGIFLNLMK 138 (521)
Q Consensus 66 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~--~~~-~~~~~~~~l~~ 138 (521)
..-+++.|+....+.+|+.+++.. +++.-...|..|..+|...+++++|.+.+..= +.+ |-. -....-..+.+
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 344778888888888888876432 11112345777777777788888887765321 111 100 01122234555
Q ss_pred HHHccCcHHHHHHHHHh-h---ccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC-C-cHHHHHHHHHHH
Q 009977 139 HFSNCSLHERVLEMFHK-I---HPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLK-P-NTCIFNILIKHH 212 (521)
Q Consensus 139 ~~~~~g~~~~a~~~~~~-~---~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~~~l~~~~ 212 (521)
.+--.|.+++|+-.-.+ + .++........++-.+..+|...|+.- |.+ | +...++.=+.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~-------------g~~~pee~g~f~~ev~-- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCT-------------GLEAPEEKGAFNAEVT-- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhccccc-------------CCCChhhcccccHHHH--
Confidence 55555666666553222 1 111111222333444444444433210 000 0 0000000000
Q ss_pred HhcCChHHHHHHHHHHH----hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CC-CCCCHHHHHHHHHHH
Q 009977 213 CKRGTLESAFEVLKEMK----KSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK---DQ-ILPDALTYNVLIDGF 284 (521)
Q Consensus 213 ~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~-~~~~~~~~~~l~~~~ 284 (521)
..++.|.++|.+=. +.|-...-...|..|...|.-.|+++.|+...+.-+.. .| -......+..+.+++
T Consensus 169 ---~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~h 245 (639)
T KOG1130|consen 169 ---SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCH 245 (639)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhh
Confidence 01222333333211 11100011223555555666667777777665433221 11 112234566777777
Q ss_pred HhCCCHHHHHHHHHHHHH----cCC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHH
Q 009977 285 CRGGKVDRAKKIMEFMKN----NGC-NPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN----FL-LKPDTIGYTTLINCF 354 (521)
Q Consensus 285 ~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~-~~~~~~~~~~l~~~~ 354 (521)
+-.|+++.|.+.|+.... .|- .........|.+.|.-..++++|+.++.+-.. .+ ..-...++-.|..+|
T Consensus 246 iflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~ 325 (639)
T KOG1130|consen 246 IFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAF 325 (639)
T ss_pred hhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 777777777777765432 221 12233455677777777777777777654321 00 112345566677777
Q ss_pred HhcCCHHHHHHHHHHHH
Q 009977 355 CRAGRVDEALELLKEMK 371 (521)
Q Consensus 355 ~~~~~~~~A~~~~~~~~ 371 (521)
...|..++|+.+.+.-+
T Consensus 326 ~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 326 NALGEHRKALYFAELHL 342 (639)
T ss_pred HhhhhHHHHHHHHHHHH
Confidence 77777777776655443
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.95 E-value=0.00036 Score=57.27 Aligned_cols=82 Identities=10% Similarity=-0.027 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYP-NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVL 280 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 280 (521)
...+..++..+...|++++|...|++.....+..+ ...+|..+...+...|++++|+..+++..... +....++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH
Confidence 34556666666666777777777776655432211 23456666666777777777777777666542 2233444444
Q ss_pred HHHHH
Q 009977 281 IDGFC 285 (521)
Q Consensus 281 ~~~~~ 285 (521)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 44444
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.94 E-value=0.00025 Score=58.23 Aligned_cols=102 Identities=9% Similarity=-0.054 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhCCCHHHHHHH
Q 009977 218 LESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILP-DALTYNVLIDGFCRGGKVDRAKKI 296 (521)
Q Consensus 218 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 296 (521)
+..+.+.+..+.+..........|..++..+...|++++|+..|++.....+.++ ...++..+...+...|++++|++.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444444444432222113355667777788888888888888888876532222 234677788888888888888888
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHH
Q 009977 297 MEFMKNNGCNPNVFNYTTLMNGFC 320 (521)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~~~ 320 (521)
++...+.. +....++..+...+.
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~ 117 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHH
Confidence 88887653 333444555555555
No 165
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.94 E-value=0.011 Score=51.41 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=25.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 245 IDGLCKNGRFREAIELFEEMVSKDQILPDALT---YNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
...+...|++++|++.|+++....+ -+... ...++.++.+.+++++|...+++.++.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP--~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYP--FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3334445555555555555544321 11111 123344445555555555555555543
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.93 E-value=0.00086 Score=55.24 Aligned_cols=86 Identities=9% Similarity=-0.083 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009977 169 ISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPN-TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDG 247 (521)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (521)
+..+...+...|++++|...+++++....-.++ ...+..++..+.+.|++++|...+++.....+ .+...+..++..
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~ 115 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP--KQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHH
Confidence 444444555555555555555555432111111 24556666666666666666666666665544 345555555556
Q ss_pred HHhcCChHH
Q 009977 248 LCKNGRFRE 256 (521)
Q Consensus 248 ~~~~g~~~~ 256 (521)
+...|+...
T Consensus 116 ~~~~g~~~~ 124 (172)
T PRK02603 116 YHKRGEKAE 124 (172)
T ss_pred HHHcCChHh
Confidence 655555433
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.92 E-value=0.00042 Score=64.33 Aligned_cols=91 Identities=12% Similarity=0.026 Sum_probs=52.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009977 173 LNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG 252 (521)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 252 (521)
...+...|++++|+..|+++++. .+.+...|..+..+|.+.|++++|+..++++....+ .+...|..++.+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDP--SLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhC
Confidence 34445556666666666665532 223445555566666666666666666666655554 34555555666666666
Q ss_pred ChHHHHHHHHHHHhc
Q 009977 253 RFREAIELFEEMVSK 267 (521)
Q Consensus 253 ~~~~A~~~~~~~~~~ 267 (521)
++++|+..|++.+..
T Consensus 85 ~~~eA~~~~~~al~l 99 (356)
T PLN03088 85 EYQTAKAALEKGASL 99 (356)
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666666554
No 168
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.91 E-value=0.00021 Score=66.29 Aligned_cols=119 Identities=14% Similarity=0.157 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHH
Q 009977 237 NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQ-ILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTL 315 (521)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 315 (521)
+......++..+....+.+.+..++.+...... ...-..|..++++.|.+.|..+.++.+++.=...|+.||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 444444455555555555555555555543211 1011223345666666666666666666655556666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009977 316 MNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFC 355 (521)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 355 (521)
+..+.+.|++..|.++...|...+...+..++...+.+|.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 6666666666666666555554444444444444333333
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.91 E-value=0.00044 Score=64.19 Aligned_cols=84 Identities=12% Similarity=-0.043 Sum_probs=35.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHH
Q 009977 356 RAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIE 435 (521)
Q Consensus 356 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (521)
..|++++|+..|+++++.... +...|..+..+|...|++++|+..++++...... +...|..+..+|...|++++|+.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 344444444444444443322 3334444444444444444444444444443221 33334444444444444444444
Q ss_pred HHHHHH
Q 009977 436 LLRLML 441 (521)
Q Consensus 436 ~~~~~~ 441 (521)
.|++++
T Consensus 92 ~~~~al 97 (356)
T PLN03088 92 ALEKGA 97 (356)
T ss_pred HHHHHH
Confidence 444444
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.90 E-value=6.5e-05 Score=50.21 Aligned_cols=62 Identities=15% Similarity=0.218 Sum_probs=48.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccC
Q 009977 455 LLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESGT 517 (521)
Q Consensus 455 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 517 (521)
+...+...|++++|...|+++++.. +-+...+..+..++...|++++|...|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4567788888888888888888764 3345778888888888888888888888888887765
No 171
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.90 E-value=2.8e-05 Score=44.33 Aligned_cols=33 Identities=42% Similarity=0.895 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 009977 276 TYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPN 308 (521)
Q Consensus 276 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 308 (521)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555554443
No 172
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.88 E-value=2.9e-05 Score=44.25 Aligned_cols=33 Identities=36% Similarity=0.729 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 009977 416 SYRIVLNFSCQKGELEKAIELLRLMLCRGFLPH 448 (521)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 448 (521)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555555443
No 173
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.00023 Score=61.14 Aligned_cols=102 Identities=19% Similarity=0.114 Sum_probs=85.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHH
Q 009977 352 NCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELE 431 (521)
Q Consensus 352 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (521)
.-+.+.+++.+|+..|.+.++..+. |.+-|..-..+|.+.|.++.|++-.+..+..+.. ...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 3467789999999999999998765 7888888999999999999999998888876443 4578999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009977 432 KAIELLRLMLCRGFLPHYATSNELLV 457 (521)
Q Consensus 432 ~a~~~~~~~~~~~~~p~~~~~~~l~~ 457 (521)
+|++.|++.+ .+.|+..+|-.=+.
T Consensus 167 ~A~~aykKaL--eldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKAL--ELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhh--ccCCCcHHHHHHHH
Confidence 9999999998 57897777654443
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.87 E-value=0.0013 Score=63.76 Aligned_cols=143 Identities=13% Similarity=0.034 Sum_probs=81.9
Q ss_pred CCCCHHHHHHHHHHHHh--cC---CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC--------CHHHHHHHHHHHH
Q 009977 340 LKPDTIGYTTLINCFCR--AG---RVDEALELLKEMKERGCKADIVTFNIILGGLCREG--------KIEEALGMLEKLW 406 (521)
Q Consensus 340 ~~~~~~~~~~l~~~~~~--~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~ 406 (521)
...+...|...+.+... .+ +.+.|..+|++..+..+. ....|..+..++.... +...+.+..++..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34566777777766432 22 256777788887776433 3445554444333221 1223333333332
Q ss_pred HC-CCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 009977 407 YD-GIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESD 485 (521)
Q Consensus 407 ~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 485 (521)
.. ....++..|..+.-.....|++++|...+++++.. .|+...|..+...+...|+.++|...++++... .|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence 22 12224455665555555567777777777777743 466677777777777777777777777777665 35544
Q ss_pred HH
Q 009977 486 SW 487 (521)
Q Consensus 486 ~~ 487 (521)
+|
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 54
No 175
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.87 E-value=3.3e-05 Score=43.67 Aligned_cols=32 Identities=25% Similarity=0.483 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 009977 416 SYRIVLNFSCQKGELEKAIELLRLMLCRGFLP 447 (521)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 447 (521)
+|+.++.+|++.|+++.|.++|+.|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 176
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.00033 Score=60.16 Aligned_cols=102 Identities=18% Similarity=0.168 Sum_probs=84.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 009977 317 NGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIE 396 (521)
Q Consensus 317 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 396 (521)
.-+.+.+++.+|+..|.++++... .|.+.|..-..+|.+.|.++.|++-.+..+..+.. ...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 457789999999999999998532 35778888899999999999999999998887544 5679999999999999999
Q ss_pred HHHHHHHHHHHCCCccCHHHHHHHHH
Q 009977 397 EALGMLEKLWYDGIYLNKASYRIVLN 422 (521)
Q Consensus 397 ~a~~~~~~~~~~~~~~~~~~~~~l~~ 422 (521)
+|.+.|++.++. .|+..+|-.=+.
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHHH
Confidence 999999999875 566666654443
No 177
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.86 E-value=0.00048 Score=61.60 Aligned_cols=132 Identities=17% Similarity=0.113 Sum_probs=78.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCC-CcHh
Q 009977 311 NYTTLMNGFCKEGKLQEAKEVFDEM----KNFLLK-PDTIGYTTLINCFCRAGRVDEALELLKEMKE----RGCK-ADIV 380 (521)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~ 380 (521)
.|..|.+.|.-.|+++.|+...+.- .+.|-. .....+..+..++.-.|+++.|.+.|+.... .|-+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4556666666777888777665432 222211 1234566677777777888888777765432 2211 1233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 009977 381 TFNIILGGLCREGKIEEALGMLEKLWYD-----GIYLNKASYRIVLNFSCQKGELEKAIELLRLMLC 442 (521)
Q Consensus 381 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (521)
...+|...|.-..+++.|+.++.+-+.. +..-....+.+|..+|...|..++|+.+.+...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4455666777667777887777654321 1111345677777788888888888777665543
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.84 E-value=0.0011 Score=64.27 Aligned_cols=146 Identities=11% Similarity=0.028 Sum_probs=89.4
Q ss_pred CCcCHHHHHHHHHHHHc--c---CcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhc--------CCHHHHHHHHHHh
Q 009977 126 CKFHEGIFLNLMKHFSN--C---SLHERVLEMFHKIHPITREKPSLKAISTCLNLLIES--------NQVDLAQNFLKYS 192 (521)
Q Consensus 126 ~~~~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~~~~a~~~~~~~ 192 (521)
.+.+..+|...+++... . +..++|+++|++..+.. +....++..+..++... .+.+.+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 35555666665555322 2 23567777777765322 22223333332222211 1234455555443
Q ss_pred hhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 009977 193 NQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILP 272 (521)
Q Consensus 193 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 272 (521)
......+.+..+|..+.-.+...|++++|...+++....+ |+...|..++..+...|+.++|.+.|++....++..|
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~---ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE---MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 3322234456677777777777899999999999988876 4677888888999999999999999988887765555
Q ss_pred CHHH
Q 009977 273 DALT 276 (521)
Q Consensus 273 ~~~~ 276 (521)
+...
T Consensus 488 t~~~ 491 (517)
T PRK10153 488 TLYW 491 (517)
T ss_pred hHHH
Confidence 4333
No 179
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.83 E-value=0.00074 Score=60.35 Aligned_cols=143 Identities=12% Similarity=0.091 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 009977 345 IGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCR-EGKIEEALGMLEKLWYDGIYLNKASYRIVLNF 423 (521)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (521)
.+|..++....+.+..+.|..+|.++.+.+. .+...|...+..-.+ .++.+.|.++|+...+. ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4577777777777778888888888875432 244455555554333 45666688888887775 33366777777888
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009977 424 SCQKGELEKAIELLRLMLCRGFLPH---YATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVE 492 (521)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 492 (521)
+...++.+.|..+|++.+.. +.++ ...|..++..-.+.|+.+.+..+.+++.+. .|+...+..+++
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 88888888888888888754 2222 247777777777888888888888777764 344444433433
No 180
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.83 E-value=4.3e-05 Score=43.17 Aligned_cols=32 Identities=34% Similarity=0.652 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 009977 276 TYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNP 307 (521)
Q Consensus 276 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 307 (521)
+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555443
No 181
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.015 Score=49.22 Aligned_cols=132 Identities=11% Similarity=0.015 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CCCCHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQ----ILPDALTYNV 279 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~ 279 (521)
+.+.++..+.-.|.+.-..+++.+..+..++ .++.....+++.-.+.|+.+.|...|++..+..+ ..-.......
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e-~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPE-QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCc-ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4455566666666666666666666665543 5555666666666666666666666665543211 1111112222
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 280 LIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 280 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
....|...+++..|...+.+....+ +.++...|.-.-+..-.|+..+|++.++.|.+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2223444455555555555555443 23333333333333334555556666555554
No 182
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.0015 Score=56.60 Aligned_cols=116 Identities=16% Similarity=0.074 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcC---CCHHHHHHH
Q 009977 360 VDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQK---GELEKAIEL 436 (521)
Q Consensus 360 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~ 436 (521)
.+....-++.-...++. |...|..|..+|...|+++.|..-|....+... +++..+..+..++... ....++..+
T Consensus 138 ~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 44444444444444443 677777777777777777777777777776532 2555666665554432 234567777
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009977 437 LRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMG 479 (521)
Q Consensus 437 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 479 (521)
|++++. .+| |.....-|...+...|++.+|...|+.|++..
T Consensus 216 l~~al~--~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 216 LRQALA--LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 777774 345 56666666677777777777777777777653
No 183
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.80 E-value=0.00061 Score=60.90 Aligned_cols=129 Identities=15% Similarity=0.151 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCK-NGRFREAIELFEEMVSKDQILPDALTYNVLID 282 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (521)
+|..+++..-+.+..+.|..+|.+..+.+. .+...|...+..-.. .++.+.|.++|+..++. ++.+...|...++
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 344444444444445555555555543322 122233332222112 33344455555555443 2334444444445
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 283 GFCRGGKVDRAKKIMEFMKNNGCNPNV---FNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
.+.+.|+.+.|..+|++.+.. +.++. ..|...+..-.+.|+.+.+.++.+++.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555554433 11111 2444444444444454444444444443
No 184
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.79 E-value=0.0004 Score=64.50 Aligned_cols=123 Identities=13% Similarity=0.166 Sum_probs=104.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 009977 270 ILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN--GCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGY 347 (521)
Q Consensus 270 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 347 (521)
.+.+......+++.+....+.+.+..++.+.... ....-+.|..++++.|.+.|..+.++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 4667778888888888888899999999988865 22334567789999999999999999999998999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 009977 348 TTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCRE 392 (521)
Q Consensus 348 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 392 (521)
+.++..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999998877666777777777777665
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.79 E-value=0.00013 Score=49.41 Aligned_cols=67 Identities=12% Similarity=0.000 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-cHHHHHHHHHHHHHcCc
Q 009977 448 HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGR-KLLFAFELLDELVIKES 515 (521)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~ 515 (521)
+..+|..+...+...|++++|+..|++.++.. +.+...|..+..++.+.| ++++|.+.+++.++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34566677777777777888888877777653 223467777777777777 67788888877777654
No 186
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.046 Score=53.41 Aligned_cols=344 Identities=11% Similarity=0.074 Sum_probs=173.0
Q ss_pred hccCCcCHHHHH-----HHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCH---HHHHHHHHHhhh
Q 009977 123 YETCKFHEGIFL-----NLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQV---DLAQNFLKYSNQ 194 (521)
Q Consensus 123 ~~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~ 194 (521)
..|++.+..-|. .++.-+...+.+..|+++-+.+. .+...+...+.....-+.+..+. +.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~--~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLN--LPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhC--CccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 345666655554 35556667788888888877664 12222256666666666665322 222233333311
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 009977 195 HLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYP---NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQIL 271 (521)
Q Consensus 195 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 271 (521)
... ....|..+++.....|+.+-|..+++.=...+...| +..-+..-+.-..+.|+.+-...++-.+..+-
T Consensus 503 --~~~-~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~--- 576 (829)
T KOG2280|consen 503 --KLT-PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL--- 576 (829)
T ss_pred --cCC-CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---
Confidence 112 334677777777788888888887764222111000 00001112222233333333333333332210
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH-Hh-CCCCCCHHHHHH
Q 009977 272 PDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEM-KN-FLLKPDTIGYTT 349 (521)
Q Consensus 272 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~-~~~~~~~~~~~~ 349 (521)
+...+ ..-..+.-.|..+|.+..+.. +. ..+-..|-+..+...+-.+..+- .. ..+.+-......
T Consensus 577 -~~s~l------~~~l~~~p~a~~lY~~~~r~~---~~---~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~ 643 (829)
T KOG2280|consen 577 -NRSSL------FMTLRNQPLALSLYRQFMRHQ---DR---ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKT 643 (829)
T ss_pred -HHHHH------HHHHHhchhhhHHHHHHHHhh---ch---hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHH
Confidence 00001 111122334555555544421 11 11222233322332222221111 00 001111222223
Q ss_pred HHHHHHhcCC----------HHHHHHHHHHHHHc-CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHH
Q 009977 350 LINCFCRAGR----------VDEALELLKEMKER-GCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYR 418 (521)
Q Consensus 350 l~~~~~~~~~----------~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 418 (521)
....+.+... ..+-+.+.+.+... |......+.+--+.-+...|+..+|.++-.+.. -||...|-
T Consensus 644 ~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~w 719 (829)
T KOG2280|consen 644 AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWW 719 (829)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHH
Confidence 3334443332 11222223333221 323344556666777888899999988776654 46888888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 009977 419 IVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGR 498 (521)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 498 (521)
.-+.+++..+++++-+++-+... . +.-|.-++.+|.+.|+.++|.+++-+.-.. . ..+.+|.+.|
T Consensus 720 Lk~~aLa~~~kweeLekfAkskk----s--PIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~ 784 (829)
T KOG2280|consen 720 LKLTALADIKKWEELEKFAKSKK----S--PIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVG 784 (829)
T ss_pred HHHHHHHhhhhHHHHHHHHhccC----C--CCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhc
Confidence 88899999999998777666543 1 333445788999999999999987543221 1 5667788888
Q ss_pred cHHHHHHH
Q 009977 499 KLLFAFEL 506 (521)
Q Consensus 499 ~~~~A~~~ 506 (521)
++.+|.++
T Consensus 785 ~~~eAad~ 792 (829)
T KOG2280|consen 785 DVKEAADL 792 (829)
T ss_pred cHHHHHHH
Confidence 88887664
No 187
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0018 Score=56.16 Aligned_cols=109 Identities=11% Similarity=0.105 Sum_probs=68.2
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Q 009977 225 LKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGG---KVDRAKKIMEFMK 301 (521)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~ 301 (521)
++.-...+| .|...|-.|...|...|+++.|...|.+..+.. +++...+..+..++.... ...++..+|++++
T Consensus 145 Le~~L~~nP--~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 145 LETHLQQNP--GDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHhCC--CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 333344454 567777777777777777777777777776654 344444555555543322 3456667777777
Q ss_pred HcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009977 302 NNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNF 338 (521)
Q Consensus 302 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 338 (521)
... +.|+.+...|...+...|++.+|...|+.|.+.
T Consensus 221 ~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 221 ALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred hcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 665 445666666666777777777777777777664
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.73 E-value=0.00016 Score=48.33 Aligned_cols=57 Identities=19% Similarity=0.305 Sum_probs=32.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 209 IKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
+..+.+.|++++|.+.|+++.+..+ .+...|..++.++...|++++|...|+++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDP--DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCST--THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455555666666666666655554 35555555556666666666666666655543
No 189
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.68 E-value=0.00079 Score=59.01 Aligned_cols=89 Identities=16% Similarity=0.091 Sum_probs=40.5
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHccCc
Q 009977 426 QKGELEKAIELLRLMLCRGFLPH----YATSNELLVRLCKAGMAEDAAIALFGLVEMG-F-KPESDSWALLVELICRGRK 499 (521)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~ 499 (521)
+.|++++|...|+.+++. .|+ ...+..+...|...|++++|...|+++.+.- - +.....+..++..+...|+
T Consensus 155 ~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~ 232 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD 232 (263)
T ss_pred hcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC
Confidence 345555555555555532 221 1334444555555555555555555554321 0 0112333344444445555
Q ss_pred HHHHHHHHHHHHHcCcc
Q 009977 500 LLFAFELLDELVIKESG 516 (521)
Q Consensus 500 ~~~A~~~~~~m~~~~~~ 516 (521)
.++|.+.|+++++..|+
T Consensus 233 ~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 233 TAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHHHHHCcC
Confidence 55555555555554444
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.66 E-value=0.0003 Score=47.66 Aligned_cols=62 Identities=26% Similarity=0.247 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 009977 203 CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG-RFREAIELFEEMVS 266 (521)
Q Consensus 203 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 266 (521)
.+|..++..+...|++++|+..|++..+.++ .+...|..+..++...| ++++|++.+++.++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p--~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDP--NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHST--THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455555555555555555555555555544 34555555555555555 45555555555544
No 191
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.64 E-value=0.019 Score=48.69 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=22.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009977 246 DGLCKNGRFREAIELFEEMVSKDQILP-DALTYNVLIDGFCRGGKVDRAKKIMEFMKN 302 (521)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 302 (521)
..+...|++.+|++.|+++....+..+ -......++.++.+.|+++.|...++.+++
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444443321111 122233344444444455555444444443
No 192
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.60 E-value=0.016 Score=49.16 Aligned_cols=65 Identities=8% Similarity=0.073 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhhccC--CcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCC
Q 009977 100 TILDKLARYKKFEAVDAVLRQMTYETC--KFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKP 164 (521)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 164 (521)
.....+...|++.+|.+.|+.+..... +....+...++.++.+.|++++|...++++....+..|
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 344455567777777777777765421 22234555666677777777777777777654444333
No 193
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.57 E-value=0.0016 Score=47.21 Aligned_cols=74 Identities=18% Similarity=0.186 Sum_probs=36.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC-ccCHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009977 387 GGLCREGKIEEALGMLEKLWYDGI-YLNKASYRIVLNFSCQKG--------ELEKAIELLRLMLCRGFLPHYATSNELLV 457 (521)
Q Consensus 387 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 457 (521)
..+...+++.....+|+.+.+.|+ -|+..+|+.++.+..+.. .+-+.+.+|+.|+..+++|+..+|+.++.
T Consensus 33 ~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~ 112 (120)
T PF08579_consen 33 NSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLG 112 (120)
T ss_pred HHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 333344555555555555555555 455555555554433221 22344455555555555555555555555
Q ss_pred HHH
Q 009977 458 RLC 460 (521)
Q Consensus 458 ~~~ 460 (521)
.+.
T Consensus 113 ~Ll 115 (120)
T PF08579_consen 113 SLL 115 (120)
T ss_pred HHH
Confidence 443
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.56 E-value=0.00041 Score=46.79 Aligned_cols=52 Identities=27% Similarity=0.387 Sum_probs=26.5
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 214 KRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 214 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
+.|++++|+++|+++....+ .+...+..++.+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP--DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT--TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555555555555555444 34444555555555555555555555555443
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.04 Score=46.73 Aligned_cols=132 Identities=14% Similarity=0.036 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-----HH
Q 009977 276 TYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYT-----TL 350 (521)
Q Consensus 276 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-----~l 350 (521)
..+.++..+...|.+.-....+.+.++...+.++.....|++.-.+.||.+.|...|++..+..-..+....+ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455555555566666666666666665444555556666666666666666666666554432222222222 22
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 351 INCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYD 408 (521)
Q Consensus 351 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 408 (521)
...|.-.+++..|...+.++...+.. |....|.-.-+..-.|+..+|.+.++.+...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23345566777777777776665433 4444444444444456777777777777765
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.54 E-value=0.009 Score=45.09 Aligned_cols=90 Identities=18% Similarity=0.073 Sum_probs=47.0
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHhc
Q 009977 175 LLIESNQVDLAQNFLKYSNQHLRLKPN--TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSY-PNLITYSTLIDGLCKN 251 (521)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 251 (521)
++-..|+.++|+.+|++.+.. |.... ...+..+...+...|++++|..++++.....+.. -+......+..++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344455555555555555442 33322 2355556666666666677666666665543310 0122222333455666
Q ss_pred CChHHHHHHHHHHH
Q 009977 252 GRFREAIELFEEMV 265 (521)
Q Consensus 252 g~~~~A~~~~~~~~ 265 (521)
|+.++|++.+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666665544
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.52 E-value=0.00011 Score=49.66 Aligned_cols=59 Identities=27% Similarity=0.360 Sum_probs=36.3
Q ss_pred cCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 009977 426 QKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWA 488 (521)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 488 (521)
..|++++|++.|+++... .| +......++.+|.+.|++++|..+++++... .|+...|.
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHH
Confidence 456677777777776643 33 5666666777777777777777777766654 35543333
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.52 E-value=0.008 Score=45.36 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=6.0
Q ss_pred cCCHHHHHHHHHHHHH
Q 009977 357 AGRVDEALELLKEMKE 372 (521)
Q Consensus 357 ~~~~~~A~~~~~~~~~ 372 (521)
.|+.++|+.+|++..+
T Consensus 14 ~G~~~~Ai~~Y~~Al~ 29 (120)
T PF12688_consen 14 LGREEEAIPLYRRALA 29 (120)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3333333333333333
No 199
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.51 E-value=0.0021 Score=46.61 Aligned_cols=67 Identities=16% Similarity=0.341 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 009977 323 GKLQEAKEVFDEMKNFLL-KPDTIGYTTLINCFCRAG--------RVDEALELLKEMKERGCKADIVTFNIILGGL 389 (521)
Q Consensus 323 ~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 389 (521)
+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|+..+.+|+..+|+.++..+
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 444444444444444444 344444444444433221 1223344455555555555555555555444
No 200
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.49 E-value=0.00019 Score=39.42 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=13.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 009977 416 SYRIVLNFSCQKGELEKAIELLRLMLCR 443 (521)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (521)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 201
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.48 E-value=0.00018 Score=39.51 Aligned_cols=29 Identities=38% Similarity=0.863 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009977 276 TYNVLIDGFCRGGKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 276 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (521)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444455555555555555554444443
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.44 E-value=0.00049 Score=47.19 Aligned_cols=58 Identities=14% Similarity=0.087 Sum_probs=26.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 458 RLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
.|.+.+++++|..++++++..+ +.+...+...+.++.+.|++++|.+.|++.++.+|+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 3444445555555555444432 222344444444444555555555555555544443
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.40 E-value=0.00079 Score=46.14 Aligned_cols=56 Identities=21% Similarity=0.224 Sum_probs=37.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 210 KHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 210 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
..|.+.+++++|.++++.+...+| .+...|...+.++...|++++|.+.|++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP--DDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc--ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456666677777777777666665 45666666666667777777777777766654
No 204
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.038 Score=46.32 Aligned_cols=141 Identities=13% Similarity=0.133 Sum_probs=69.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHH
Q 009977 209 IKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKD----QILPDALTYNVLIDGF 284 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~~~~ 284 (521)
...|..+|..+.|-..+++.-+ ..++.++++|+++|++....- ....-...+......+
T Consensus 98 s~lY~E~GspdtAAmaleKAak-----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 98 SELYVECGSPDTAAMALEKAAK-----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHhCCcchHHHHHHHHHH-----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 4556666666666555554332 123344555555555543320 0011122334444455
Q ss_pred HhCCCHHHHHHHHHHHHHc----CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh
Q 009977 285 CRGGKVDRAKKIMEFMKNN----GCNPN-VFNYTTLMNGFCKEGKLQEAKEVFDEMKNFL---LKPDTIGYTTLINCFCR 356 (521)
Q Consensus 285 ~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~ 356 (521)
.+...+++|-..+.+-... .--++ -..|...+-.|.-..++..|...++.-.+.+ -.-+..+...|+.+| .
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-D 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-c
Confidence 5555665554444322110 00111 1234455556666778888888887644322 112356667777776 4
Q ss_pred cCCHHHHHHHH
Q 009977 357 AGRVDEALELL 367 (521)
Q Consensus 357 ~~~~~~A~~~~ 367 (521)
.|+.+++.+++
T Consensus 240 ~gD~E~~~kvl 250 (308)
T KOG1585|consen 240 EGDIEEIKKVL 250 (308)
T ss_pred cCCHHHHHHHH
Confidence 57777665544
No 205
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.36 E-value=0.12 Score=47.67 Aligned_cols=430 Identities=16% Similarity=0.174 Sum_probs=232.9
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHH--HHc
Q 009977 69 IKCEKEPQCALEIFNTVSEQKGFNHN----NATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKH--FSN 142 (521)
Q Consensus 69 ~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 142 (521)
+.++++..+|.++|.++.+...-.|. ...-+.++++|. .++.+.....+....+.. + ...|..+..+ +.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 45788999999999988544211111 223455666665 455666666666666553 2 3355555554 457
Q ss_pred cCcHHHHHHHHHhhcccc-CCCCC------------HhHHHHHHHHHHhcCCHHHHHHHHHHhhhcC---CCCCcHHHHH
Q 009977 143 CSLHERVLEMFHKIHPIT-REKPS------------LKAISTCLNLLIESNQVDLAQNFLKYSNQHL---RLKPNTCIFN 206 (521)
Q Consensus 143 ~g~~~~a~~~~~~~~~~~-~~~~~------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ 206 (521)
.+.+.+|++.+....... +..+. ...-+..+.++...|++.++..+++++.... ...-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 799999999887664321 11111 1112334688889999999999999887531 1224677888
Q ss_pred HHHHHHHhcC--------C-------hHHHHHHHHHHHhCCCC-----CCCHHHHHHHHHHHHhc--CChHHHHHHHHHH
Q 009977 207 ILIKHHCKRG--------T-------LESAFEVLKEMKKSQMS-----YPNLITYSTLIDGLCKN--GRFREAIELFEEM 264 (521)
Q Consensus 207 ~l~~~~~~~g--------~-------~~~A~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~ 264 (521)
.++-.+.+.= . ++.+.-...+|...... .|.......++....-. .+..--.++++.+
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 7665555421 1 12222222333221110 12222222222222211 1222233444444
Q ss_pred HhcCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009977 265 VSKDQILPDAL-TYNVLIDGFCRGGKVDRAKKIMEFMKNNGC----NPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFL 339 (521)
Q Consensus 265 ~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 339 (521)
.... +.|+.. ....+...+.+ +.+++..+-+.+....+ ..-..+|..++....+.++...|.+.+.-+...
T Consensus 252 e~~y-v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l- 327 (549)
T PF07079_consen 252 ENFY-VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL- 327 (549)
T ss_pred Hhhc-cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-
Confidence 3332 444432 22333343333 44555554444433211 112446777888888899999998888776652
Q ss_pred CCCCHHHH-------HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHh-HHHHH---HHHHHhcCC-HHHHHHHHH
Q 009977 340 LKPDTIGY-------TTLINCFCR----AGRVDEALELLKEMKERGCKADIV-TFNII---LGGLCREGK-IEEALGMLE 403 (521)
Q Consensus 340 ~~~~~~~~-------~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l---~~~~~~~g~-~~~a~~~~~ 403 (521)
.|+...- ..+.+..+. .-+...=+.+|+.+...++ |.. ....+ +.-+-+.|. -++|+.+++
T Consensus 328 -dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 328 -DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred -CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 3433211 112222221 1123334445565555433 221 11122 223344554 778888888
Q ss_pred HHHHCCCccCHHHHHHHH----HHHHc---CCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHH--HHhcCCHHHHHH
Q 009977 404 KLWYDGIYLNKASYRIVL----NFSCQ---KGELEKAIELLRLMLCRGFLP----HYATSNELLVR--LCKAGMAEDAAI 470 (521)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~a~~ 470 (521)
.+.+-..- |...-|.+. .+|.. ...+.+-+.+-+-+.+.|+.| +...-|.|.++ +...|++.++.-
T Consensus 405 ~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ 483 (549)
T PF07079_consen 405 LILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYL 483 (549)
T ss_pred HHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 88764211 333333222 23322 233444455545555668887 45555556554 457889988877
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 009977 471 ALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 512 (521)
.-.-+.+. .|++.+|..++-++....++++|.+++..+.-
T Consensus 484 ys~WL~~i--aPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 484 YSSWLTKI--APSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHh--CCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 66655554 68899999999999999999999999987654
No 206
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.35 E-value=0.11 Score=46.92 Aligned_cols=309 Identities=13% Similarity=0.129 Sum_probs=181.4
Q ss_pred ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH--HhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHH--HccCcHHHH
Q 009977 74 EPQCALEIFNTVSEQKGFNHNNATYATILDKL--ARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHF--SNCSLHERV 149 (521)
Q Consensus 74 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a 149 (521)
.+-.+..+|..-.+..| |..|-..+ +..|+-..|.++-.+..+. +..|...+..++.+- .-.|+++.|
T Consensus 68 sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~A 139 (531)
T COG3898 68 SPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDA 139 (531)
T ss_pred CcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHH
Confidence 45667777776543333 33333333 3456777777776665432 244555566665543 345888888
Q ss_pred HHHHHhhccccCCCCCHhH--HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc-HHHHHHHHHHHHhcCChHHHHHHHH
Q 009977 150 LEMFHKIHPITREKPSLKA--ISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPN-TCIFNILIKHHCKRGTLESAFEVLK 226 (521)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 226 (521)
.+-|+.|.. .|.... +..+.-..-+.|+.+.|..+-+..-. .-|. ...+...+...+..|+|+.|+++.+
T Consensus 140 r~kfeAMl~----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~---~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 140 RKKFEAMLD----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAE---KAPQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred HHHHHHHhc----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh---hccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 888888853 233222 22222233357888888877776643 3333 5577888888888899999988888
Q ss_pred HHHhCCCCCCCHHHH--HHHHHHHH---hcCChHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHH
Q 009977 227 EMKKSQMSYPNLITY--STLIDGLC---KNGRFREAIELFEEMVSKDQILPDALT-YNVLIDGFCRGGKVDRAKKIMEFM 300 (521)
Q Consensus 227 ~~~~~~~~~~~~~~~--~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~ 300 (521)
.-.......+++.-- ..|+.+-. -.-+...|...-.+..+ ..||..- -..-..++.+.|+..++-.+++.+
T Consensus 213 ~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 213 AQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 766554433443221 22222211 12345666666555544 3455332 233456678888999999998888
Q ss_pred HHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 009977 301 KNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN-FLLKPD-TIGYTTLINCFCRAGRVDEALELLKEMKERGCKAD 378 (521)
Q Consensus 301 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 378 (521)
-+.. |.+..+ ++..+.+.|+.. ..-+++..+ ...+|+ ..+...+..+-...|++..|..--+..... .|.
T Consensus 290 WK~e--PHP~ia--~lY~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pr 361 (531)
T COG3898 290 WKAE--PHPDIA--LLYVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APR 361 (531)
T ss_pred HhcC--CChHHH--HHHHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--Cch
Confidence 8763 444333 223344555433 333332221 012333 555566677777788888887766666554 456
Q ss_pred HhHHHHHHHHHHh-cCCHHHHHHHHHHHHHC
Q 009977 379 IVTFNIILGGLCR-EGKIEEALGMLEKLWYD 408 (521)
Q Consensus 379 ~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 408 (521)
...|..|...-.. .|+-.++..++.+..+.
T Consensus 362 es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 362 ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 6677777666544 48888888888887765
No 207
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.2 Score=49.24 Aligned_cols=90 Identities=6% Similarity=-0.043 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCc--hHHHHHHHHhhhccCCcCHHHHHHHHHHH
Q 009977 63 GAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKF--EAVDAVLRQMTYETCKFHEGIFLNLMKHF 140 (521)
Q Consensus 63 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (521)
..++..+...+.+..|+++-.++ ..+-.. +...|..-...+.+..+. +++.+.+++=.... ......|..+.+..
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l-~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLL-NLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRA 517 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHh-CCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHH
Confidence 34556666666777777776665 221111 134444444444444221 12222222211111 12233555666666
Q ss_pred HccCcHHHHHHHHHh
Q 009977 141 SNCSLHERVLEMFHK 155 (521)
Q Consensus 141 ~~~g~~~~a~~~~~~ 155 (521)
..+|+++-|..+++.
T Consensus 518 y~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 518 YQEGRFELARKLLEL 532 (829)
T ss_pred HhcCcHHHHHHHHhc
Confidence 667777777766553
No 208
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.26 E-value=0.1 Score=50.24 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=13.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 009977 388 GLCREGKIEEALGMLEKLWYD 408 (521)
Q Consensus 388 ~~~~~g~~~~a~~~~~~~~~~ 408 (521)
+|.+.|+..+|.++++++...
T Consensus 826 AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 826 AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHhcchHHHHHHHHHhhhh
Confidence 455666777777777766543
No 209
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.26 E-value=0.013 Score=48.38 Aligned_cols=87 Identities=24% Similarity=0.257 Sum_probs=58.8
Q ss_pred CcHhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcC----------------CCHHHHHH
Q 009977 377 ADIVTFNIILGGLCRE-----GKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQK----------------GELEKAIE 435 (521)
Q Consensus 377 ~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~a~~ 435 (521)
.+..+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.|++.+=+. .+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3778888888888753 66776777778888888888888888888876431 12344555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009977 436 LLRLMLCRGFLPHYATSNELLVRLCKAG 463 (521)
Q Consensus 436 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g 463 (521)
++++|...|+-||.+++..+++.+.+.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 6666666666666666666665555444
No 210
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.21 E-value=0.01 Score=50.90 Aligned_cols=101 Identities=20% Similarity=0.118 Sum_probs=73.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-HHHHHHHH
Q 009977 416 SYRIVLNFSCQKGELEKAIELLRLMLCRGFL--PHYATSNELLVRLCKAGMAEDAAIALFGLVEM-GFKPE-SDSWALLV 491 (521)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~ 491 (521)
.|+..+..+ ..|++..|...|...++..-. -....+..|..++...|++++|...|..+.+. +-.|. ++.+..|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 566666644 677788888888888865211 13444556888888899998888888888753 22222 36777888
Q ss_pred HHHHccCcHHHHHHHHHHHHHcCccC
Q 009977 492 ELICRGRKLLFAFELLDELVIKESGT 517 (521)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~m~~~~~~~ 517 (521)
....+.|+.++|...|+++.++.|++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 88888999999999999988887764
No 211
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.09 Score=45.74 Aligned_cols=145 Identities=13% Similarity=0.092 Sum_probs=81.0
Q ss_pred HHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCH
Q 009977 103 DKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQV 182 (521)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 182 (521)
......|++.+|..+|....... +-+......++.+|...|+.+.|..++..++... ..........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcC
Confidence 34556777777777777777664 3345566677777777888888888777775311 111111122234444444444
Q ss_pred HHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009977 183 DLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG 252 (521)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 252 (521)
.+...+-+.+-. .+.|...-..+...+...|+.+.|++.+-.+.+.+....|...-..++..+...|
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444443321 2235666666666777777777776666555554433344455555555554444
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.18 E-value=0.021 Score=50.21 Aligned_cols=95 Identities=14% Similarity=0.049 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--ccCHHHHHHHHH
Q 009977 347 YTTLINCFCRAGRVDEALELLKEMKERGCKAD--IVTFNIILGGLCREGKIEEALGMLEKLWYDGI--YLNKASYRIVLN 422 (521)
Q Consensus 347 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~ 422 (521)
|...+..+.+.|++++|+..|+.+.+..+... ..++..+...|...|++++|...|+.+...-+ ......+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333444555555555555554422110 12444445555555555555555555543311 111223333333
Q ss_pred HHHcCCCHHHHHHHHHHHH
Q 009977 423 FSCQKGELEKAIELLRLML 441 (521)
Q Consensus 423 ~~~~~g~~~~a~~~~~~~~ 441 (521)
.+...|+.++|..+|+.++
T Consensus 226 ~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 4444455555555555444
No 213
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.17 E-value=0.19 Score=46.28 Aligned_cols=67 Identities=12% Similarity=0.201 Sum_probs=51.8
Q ss_pred CCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccC
Q 009977 58 RFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETC 126 (521)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 126 (521)
++.+|-.++.-+..++..++-.++++++. ..++.-..+|..-++.-...++++..+.+|.+.+....
T Consensus 41 nI~S~fqLiq~~~tq~s~~~~re~yeq~~--~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 41 NILSYFQLIQYLETQESMDAEREMYEQLS--SPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHhc--CCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 56788888888888888888888888874 34555566777777777777888888888888876643
No 214
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.17 E-value=0.013 Score=48.43 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCC
Q 009977 394 KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGE 429 (521)
Q Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (521)
+.+-|++++++|...|+-||..++..+++.+++.+.
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 456788999999999999999999999999866654
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.16 E-value=0.02 Score=45.57 Aligned_cols=71 Identities=21% Similarity=0.292 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHH
Q 009977 416 SYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLV-----EMGFKPESDSWA 488 (521)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~ 488 (521)
....++..+...|++++|..+.+.++. ..| +...+..++.+|...|+..+|.++|+++. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 445566677788889999998888884 456 77788888889999999888888888764 368888776543
No 216
>PRK15331 chaperone protein SicA; Provisional
Probab=97.14 E-value=0.055 Score=42.81 Aligned_cols=90 Identities=16% Similarity=0.021 Sum_probs=60.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 009977 386 LGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMA 465 (521)
Q Consensus 386 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 465 (521)
..-+...|++++|..+|+-+...++. +..-|..|..++-..+++++|+..|..+...+. -|+..+.....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 34455677888888888777765543 555666777777777788888887776654321 2334444567777778888
Q ss_pred HHHHHHHHHHHH
Q 009977 466 EDAAIALFGLVE 477 (521)
Q Consensus 466 ~~a~~~~~~~~~ 477 (521)
+.|...|....+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888887777766
No 217
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.13 E-value=0.16 Score=46.58 Aligned_cols=167 Identities=15% Similarity=0.067 Sum_probs=97.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCcHhHHH
Q 009977 310 FNYTTLMNGFCKEGKLQEAKEVFDEMKNFL---LKPDTIGYTTLINCFCR---AGRVDEALELLKEMKERGCKADIVTFN 383 (521)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~ 383 (521)
.+...++-.|....+++.-+++.+.+.... +......-....-++.+ .|+.++|+.++..+......+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 344456667888889999999998887631 11112222334445566 788999999988866666667888888
Q ss_pred HHHHHHHh---------cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCC----HHHHHHHH---HHHH-HCCCC
Q 009977 384 IILGGLCR---------EGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGE----LEKAIELL---RLML-CRGFL 446 (521)
Q Consensus 384 ~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~a~~~~---~~~~-~~~~~ 446 (521)
.++..|-. ....++|+..|.+.-+.. |+..+=-.++..+...|. -.+..++- ..+. ++|..
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 88877642 123566777776665542 333221112222222232 12233333 1211 22322
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 447 ---PHYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 447 ---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
.+.-.+..++.++.-.|+.++|.+..++|.+.
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 24455566777777788888888888887765
No 218
>PRK15331 chaperone protein SicA; Provisional
Probab=97.10 E-value=0.031 Score=44.21 Aligned_cols=90 Identities=13% Similarity=0.026 Sum_probs=41.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Q 009977 209 IKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGG 288 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 288 (521)
..-+...|++++|..+|+-+...++ -+..-|..|..++...+++++|+..|......+ .-|+..+-....++...|
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~--~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDF--YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhC
Confidence 3334445555555555555544443 344444445555555555555555554443321 122222333444445555
Q ss_pred CHHHHHHHHHHHHH
Q 009977 289 KVDRAKKIMEFMKN 302 (521)
Q Consensus 289 ~~~~a~~~~~~~~~ 302 (521)
+.+.|...|....+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 55555555544443
No 219
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.09 E-value=0.21 Score=45.33 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=33.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 009977 316 MNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKI 395 (521)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 395 (521)
+.-+...|+...|.++-.+.. .|+...|-..+.+++..++|++-..+... . + .+.-|..++.+|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k--K-sPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K--K-SPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C--C-CCCChHHHHHHHHHCCCH
Confidence 333444444444444433332 24444444445555555555444333211 0 0 223444444444444444
Q ss_pred HHHHHHHHH
Q 009977 396 EEALGMLEK 404 (521)
Q Consensus 396 ~~a~~~~~~ 404 (521)
.+|..++.+
T Consensus 254 ~eA~~yI~k 262 (319)
T PF04840_consen 254 KEASKYIPK 262 (319)
T ss_pred HHHHHHHHh
Confidence 444444433
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.07 E-value=0.0025 Score=44.33 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKS----QMSYPN-LITYSTLIDGLCKNGRFREAIELFEEMV 265 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 265 (521)
+++.+...|...|++++|++.|++..+. |...++ ..++..++.++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5556666666666666666666655421 111111 3445556666666666666666666554
No 221
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.00 E-value=0.36 Score=46.36 Aligned_cols=410 Identities=10% Similarity=0.031 Sum_probs=211.8
Q ss_pred CCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHH
Q 009977 57 SRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNN-ATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLN 135 (521)
Q Consensus 57 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (521)
-++..|+.++.--....+.+.+...++.++.. .|.. --|......=.+.|..+.+.++|++.+. +++.+...|..
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k---yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~ 118 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK---YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLS 118 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHH
Confidence 35667887777666666667777777777633 2333 3466666666778888999999998886 46777777777
Q ss_pred HHHHHH-ccCcHHHHHHHHHhhccccCC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHH
Q 009977 136 LMKHFS-NCSLHERVLEMFHKIHPITRE-KPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHC 213 (521)
Q Consensus 136 l~~~~~-~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 213 (521)
....+. ..|+.+...+.|++.....+. --+...|...|.--..++++.....+++++++. | ..-++..-.-|.
T Consensus 119 Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P-~~~~~~~f~~f~ 193 (577)
T KOG1258|consen 119 YLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----P-LHQLNRHFDRFK 193 (577)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----h-hhHhHHHHHHHH
Confidence 666554 458888888888887644333 333445666666666777788888888777642 1 112222211111
Q ss_pred ---hc------CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHhcCCCCCC-HHHHHHHH-
Q 009977 214 ---KR------GTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFRE-AIELFEEMVSKDQILPD-ALTYNVLI- 281 (521)
Q Consensus 214 ---~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~-~~~~~~l~- 281 (521)
+. ...+++.++-...... ......++..+ .....+..... .+. ....+.+.
T Consensus 194 ~~l~~~~~~~l~~~d~~~~l~~~~~~~--------------~~~~~~~~~~e~~~~~v~~~~~~---s~~l~~~~~~l~~ 256 (577)
T KOG1258|consen 194 QLLNQNEEKILLSIDELIQLRSDVAER--------------SKITHSQEPLEELEIGVKDSTDP---SKSLTEEKTILKR 256 (577)
T ss_pred HHHhcCChhhhcCHHHHHHHhhhHHhh--------------hhcccccChhHHHHHHHhhccCc---cchhhHHHHHHHH
Confidence 11 1112222211111110 00000011111 11111111000 000 00111111
Q ss_pred ------HHHHhCCCHHHHHHHHHHHHHcC---CC----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 009977 282 ------DGFCRGGKVDRAKKIMEFMKNNG---CN----PNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYT 348 (521)
Q Consensus 282 ------~~~~~~~~~~~a~~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 348 (521)
.++...-........++.-++.- +. ++..+|..-+..-.+.|+.+.+.-+|++..-- +..-...|-
T Consensus 257 ~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWi 335 (577)
T KOG1258|consen 257 IVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWI 335 (577)
T ss_pred HHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHH
Confidence 11112222223333333333221 11 23456666677777888888888888776531 222244555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHH-HHHHHHHHHHcC
Q 009977 349 TLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKA-SYRIVLNFSCQK 427 (521)
Q Consensus 349 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 427 (521)
..+......|+.+-|..++....+-..+-.+.+-..-....-..|+++.|..+++.+...- |+.. .-..-+....+.
T Consensus 336 ky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~ 413 (577)
T KOG1258|consen 336 KYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRK 413 (577)
T ss_pred HHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHh
Confidence 5555555568888887777666554333222222111222334578888888888887752 3322 122223344566
Q ss_pred CCHHHHH---HHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 009977 428 GELEKAI---ELLRLMLCRGFLPHYATSNELLVRL-----CKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGR 498 (521)
Q Consensus 428 g~~~~a~---~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 498 (521)
|..+.+. .++...... .-+..+...+.--+ .-.++.+.|..++.++.+.- +++...|..++......+
T Consensus 414 ~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 414 GNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred cchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 7777776 333333221 22333333333322 23567888888888877652 445566777777666554
No 222
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.00 E-value=0.041 Score=43.83 Aligned_cols=71 Identities=21% Similarity=0.335 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 009977 381 TFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLC-----RGFLPHYATS 452 (521)
Q Consensus 381 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~ 452 (521)
+...++..+...|++++|..+.+.+....+- +...|..++.+|...|+..+|.+.|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4556677778889999999999988887544 778889999999999999999998887753 3888877653
No 223
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.94 E-value=0.037 Score=52.69 Aligned_cols=131 Identities=17% Similarity=0.241 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009977 168 AISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDG 247 (521)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (521)
....++.-+.+.|..+.|+.+.+. +. .-.....+.|+++.|.++.++. .+...|..|...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D----------~~---~rFeLAl~lg~L~~A~~~a~~~-------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTD----------PD---HRFELALQLGNLDIALEIAKEL-------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-----------HH---HHHHHHHHCT-HHHHHHHCCCC-------STHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCC----------hH---HHhHHHHhcCCHHHHHHHHHhc-------CcHHHHHHHHHH
Confidence 345555555556666666554432 11 1133445666666666554321 455567777777
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHH
Q 009977 248 LCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQE 327 (521)
Q Consensus 248 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 327 (521)
....|+++-|++.|++... +..|+-.|.-.|+.++-.++.+.....| -++....++.-.|+.++
T Consensus 357 AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~ 420 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEE 420 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHH
T ss_pred HHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHH
Confidence 7777777777666665421 3445555666666666666666655554 23444444555566666
Q ss_pred HHHHHHH
Q 009977 328 AKEVFDE 334 (521)
Q Consensus 328 A~~~~~~ 334 (521)
..+++.+
T Consensus 421 cv~lL~~ 427 (443)
T PF04053_consen 421 CVDLLIE 427 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655554
No 224
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.19 Score=43.79 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=73.0
Q ss_pred HHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcC
Q 009977 137 MKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRG 216 (521)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 216 (521)
.......|++.+|..+|...... ..-+......++.+|...|+.+.|..++..+..... .........-+..+.+..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHh
Confidence 33455667777777777666532 233345556666677777777777777765532110 001111112233344444
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Q 009977 217 TLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGG 288 (521)
Q Consensus 217 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 288 (521)
...+..++-.+.-. ++ .|...-..+...+...|+.++|++.+-.+++++.-.-|...-..++..+.-.|
T Consensus 218 ~~~~~~~l~~~~aa-dP--dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 218 ATPEIQDLQRRLAA-DP--DDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred cCCCHHHHHHHHHh-CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 44333333333322 22 25555555666666666666666666655554333333444445555444444
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.92 E-value=0.0038 Score=43.38 Aligned_cols=63 Identities=17% Similarity=0.105 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 009977 450 ATSNELLVRLCKAGMAEDAAIALFGLVE----MGF-KPE-SDSWALLVELICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 512 (521)
.+++.+...|...|++++|+..|++.++ .|- .|+ ..++..+..++...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455566666666666666666666553 110 011 24555666677777777777777776654
No 226
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.46 Score=47.51 Aligned_cols=179 Identities=11% Similarity=0.086 Sum_probs=98.1
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCH--HHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHH
Q 009977 61 SHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNN--ATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMK 138 (521)
Q Consensus 61 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (521)
+-..-+..+.+..-+.-|+.+-+.- +..++. .......+.+.+.|++++|...|-+-+.. +.| ..++.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 4556777888888888888886553 222332 33555566777888888888777665422 112 13455
Q ss_pred HHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCCh
Q 009977 139 HFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTL 218 (521)
Q Consensus 139 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 218 (521)
-|.......+-...++.+.+ ..-.+......++.+|.+.++.+...++.+... . |.. ..-....+..+.+.+-.
T Consensus 406 kfLdaq~IknLt~YLe~L~~--~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHK--KGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHH--cccccchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cce--eeeHHHHHHHHHHhChH
Confidence 55555555555556666653 223444455667777777777777776665432 1 100 01133445555556666
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009977 219 ESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEM 264 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 264 (521)
++|.-+-.+... +..... -.+-..+++++|++++..+
T Consensus 480 ~~a~~LA~k~~~------he~vl~---ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 480 DEAELLATKFKK------HEWVLD---ILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHhcc------CHHHHH---HHHHHhcCHHHHHHHHhcC
Confidence 666555443321 111111 1233455666666666544
No 227
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.85 E-value=0.022 Score=43.52 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 009977 235 YPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFC 285 (521)
Q Consensus 235 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 285 (521)
.|+..+..+++.+|+.+|++..|+++.+...+..+++.+..+|..|+.-..
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 466677777777777777777777777777666666666666666665443
No 228
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.84 E-value=0.078 Score=47.25 Aligned_cols=228 Identities=12% Similarity=0.021 Sum_probs=112.0
Q ss_pred HHhcCChHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCC---cchHHHHHHHHHh
Q 009977 248 LCKNGRFREAIELFEEMVSKDQ-ILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN--GCNPN---VFNYTTLMNGFCK 321 (521)
Q Consensus 248 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~ 321 (521)
+....+.++|+..+.+.+.+-. ...-..++..+..+.++.|.+++++..--.-++. ..... ...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777776654311 1111334556666666777766665443221111 00111 1234444444444
Q ss_pred cCCHHHHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCcHhHHHHHHHHHHhc
Q 009977 322 EGKLQEAKEVFDEMKNF-LLKPD---TIGYTTLINCFCRAGRVDEALELLKEMKERGC-----KADIVTFNIILGGLCRE 392 (521)
Q Consensus 322 ~~~~~~A~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~ 392 (521)
.-++.+++.+-..-... |..|. ......+..++...+.++++++.|+...+... ......+..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 44555555444332221 11111 12223344555566667777777766654311 11234566666667777
Q ss_pred CCHHHHHHHHHHHHHC----CCccCHH-HHH-----HHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 009977 393 GKIEEALGMLEKLWYD----GIYLNKA-SYR-----IVLNFSCQKGELEKAIELLRLMLCR----GFLP-HYATSNELLV 457 (521)
Q Consensus 393 g~~~~a~~~~~~~~~~----~~~~~~~-~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~ 457 (521)
.++++|.-+..+..+. ++. |.. -|. .+.-++...|+...|.+..++..+. |-.+ .......+.+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 7777776666554432 222 111 121 2223455566666666666555432 3222 3334455666
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 009977 458 RLCKAGMAEDAAIALFGLV 476 (521)
Q Consensus 458 ~~~~~g~~~~a~~~~~~~~ 476 (521)
.|...|+.+.|..-|+++.
T Consensus 255 IyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHhcccHhHHHHHHHHHH
Confidence 6666777776666666554
No 229
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.82 E-value=0.35 Score=43.35 Aligned_cols=203 Identities=14% Similarity=0.100 Sum_probs=115.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHH----HHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---HHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVL----KEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD---ALT 276 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~ 276 (521)
++..+..+.++.|.+++++..- +-..+..-...-...|..+.+++-+..++.+++.+-+.-....|..|- -..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 4555556666666666654321 111111100012344556666666666677777666555544333221 123
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHH
Q 009977 277 YNVLIDGFCRGGKVDRAKKIMEFMKNNGC-----NPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN----FLLKPDTIGY 347 (521)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~ 347 (521)
..++..+....+.++++++.|+...+--. .....++..|...|.+..|+++|.-+..+..+ .++..-..-|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 34566677777788888888887765211 12345778888889999999988877665533 2222111222
Q ss_pred H-----HHHHHHHhcCCHHHHHHHHHHHHH----cCCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 348 T-----TLINCFCRAGRVDEALELLKEMKE----RGCKA-DIVTFNIILGGLCREGKIEEALGMLEKLW 406 (521)
Q Consensus 348 ~-----~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 406 (521)
. .|.-++...|....|.+.-++..+ .|-.+ .......+...|-..|+.+.|+.-++...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 233456667777777777666543 33221 12334556677778888888887777654
No 230
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.80 E-value=0.052 Score=50.51 Aligned_cols=67 Identities=7% Similarity=-0.041 Sum_probs=39.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 201 NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNL-ITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 201 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
+...++.+..+|.+.|++++|+..|++..+.++..+.. .+|..+..+|...|+.++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45566666666666666666666666666555421111 34666666666666666666666666553
No 231
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.79 E-value=0.39 Score=43.67 Aligned_cols=107 Identities=17% Similarity=0.209 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009977 276 TYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFC 355 (521)
Q Consensus 276 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 355 (521)
+.+..+.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-..+... +..+..|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34555666677787777777766553 46777777788888888888876664332 224567777888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 009977 356 RAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGML 402 (521)
Q Consensus 356 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 402 (521)
+.|+..+|..+...+ .+..-+..|.+.|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 888888887777651 1244566777888887776553
No 232
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.75 E-value=0.058 Score=41.20 Aligned_cols=102 Identities=7% Similarity=0.104 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHH
Q 009977 94 NNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCL 173 (521)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 173 (521)
|..++..++.++++.|+.+....+++..- |+.++... ..+. .....+..|+..++.+++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~----------~~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD----------YPPSSPLYPTSRLLIAIV 59 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc----------cCCCCCCCCCHHHHHHHH
Confidence 34566677777777777777777766554 22222100 0000 222245577777888888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcC
Q 009977 174 NLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRG 216 (521)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 216 (521)
.+|+..+++..|.++++...+.++++-+..+|..|+.-....-
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 8888888888888888887777777777777777776655433
No 233
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.68 E-value=0.066 Score=41.35 Aligned_cols=57 Identities=19% Similarity=0.114 Sum_probs=32.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC--ccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 009977 386 LGGLCREGKIEEALGMLEKLWYDGI--YLNKASYRIVLNFSCQKGELEKAIELLRLMLC 442 (521)
Q Consensus 386 ~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (521)
.....+.|++++|.+.|+.+...-+ .-....-..++.+|.+.+++++|...+++.++
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444555666666666666665411 11334445556666666666666666666664
No 234
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.65 E-value=0.53 Score=43.34 Aligned_cols=177 Identities=18% Similarity=0.072 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCCcchHH
Q 009977 239 ITYSTLIDGLCKNGRFREAIELFEEMVSKDQ--ILPDALTYNVLIDGFCR---GGKVDRAKKIMEFMKNNGCNPNVFNYT 313 (521)
Q Consensus 239 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 313 (521)
.+...++-+|-...+++..+++++.+..... +.-....-...+-++.+ .|+.++|++++..+......+++.++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 3344555567777777777777777754311 11111222233344455 667777777777655444456666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 009977 314 TLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREG 393 (521)
Q Consensus 314 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 393 (521)
.++..|-.. |.+ .+.. |. ...++|+..|.+.-+.. |+..+--.++..+...|
T Consensus 222 L~GRIyKD~---------~~~---s~~~-d~-------------~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g 273 (374)
T PF13281_consen 222 LLGRIYKDL---------FLE---SNFT-DR-------------ESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAG 273 (374)
T ss_pred HHHHHHHHH---------HHH---cCcc-ch-------------HHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcC
Confidence 666655321 100 0000 11 11445555555444331 22221111111122222
Q ss_pred C----HHHHHHHH---H-HHHHCC---CccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 009977 394 K----IEEALGML---E-KLWYDG---IYLNKASYRIVLNFSCQKGELEKAIELLRLMLCR 443 (521)
Q Consensus 394 ~----~~~a~~~~---~-~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (521)
. -.+..++- . .+.+.| ...+...+..++.++.-.|+.++|.+..++|.+.
T Consensus 274 ~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 274 HDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred CcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1 11111211 1 111122 2345666778888888899999999999999854
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.61 E-value=0.14 Score=49.56 Aligned_cols=164 Identities=21% Similarity=0.174 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCH------HHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCC
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNL------ITYSTLIDGLCK----NGRFREAIELFEEMVSKDQILPD 273 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 273 (521)
....++....-.|+-+.+++.+.+..+.+.. ..+ ..|..++..++. ..+.+.|.++++.+..+ .|+
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i-~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~ 265 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENI-RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPN 265 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCc-chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCC
Confidence 4455667777778888888888877664332 222 223444433333 45678888899888876 345
Q ss_pred HHHHH-HHHHHHHhCCCHHHHHHHHHHHHHcC---CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 009977 274 ALTYN-VLIDGFCRGGKVDRAKKIMEFMKNNG---CNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTT 349 (521)
Q Consensus 274 ~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 349 (521)
...|. .-.+.+...|++++|++.|+...... .+.....+..++-.+.-.+++++|.+.|..+.+..- -+...|.-
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y 344 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAY 344 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHH
Confidence 44443 33455667889999999998765321 122334556677788888999999999998887421 12344444
Q ss_pred HHH-HHHhcCCH-------HHHHHHHHHHHH
Q 009977 350 LIN-CFCRAGRV-------DEALELLKEMKE 372 (521)
Q Consensus 350 l~~-~~~~~~~~-------~~A~~~~~~~~~ 372 (521)
+.. ++...++. ++|.++|.+...
T Consensus 345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 345 LAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 333 34556776 888888887754
No 236
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.57 E-value=0.29 Score=47.26 Aligned_cols=54 Identities=19% Similarity=0.003 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009977 238 LITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMK 301 (521)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 301 (521)
..+...+..-+.+...+.-|-++|.+|-+ ...++......++|++|..+-+...
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCc
Confidence 33444444444445555556666655522 1334455556666666666655443
No 237
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.56 E-value=0.54 Score=42.17 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=29.0
Q ss_pred HhcCChHHHHHHHHHhhhCC-CCCCCHH------HHHHHHHHHHhcC-CchHHHHHHHHhh
Q 009977 70 KCEKEPQCALEIFNTVSEQK-GFNHNNA------TYATILDKLARYK-KFEAVDAVLRQMT 122 (521)
Q Consensus 70 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~------~~~~l~~~~~~~~-~~~~a~~~~~~~~ 122 (521)
.++|+.+.|..++.++.... ...|+.. .|+.-. .....+ +++.|...+++..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~-~l~~~~~~~~~a~~wL~~a~ 63 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGK-SLLSKKDKYEEAVKWLQRAY 63 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHH-HHHHcCCChHHHHHHHHHHH
Confidence 36788999999998874332 2233321 232222 233344 6777766665554
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.099 Score=47.56 Aligned_cols=61 Identities=15% Similarity=0.053 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
+++.+.-+|.+.+++..|+...++.+..++ +|+...-.-..++...|+++.|+..|+++++
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~--~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDP--NNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 344444445555555555555555544443 3444444444455555555555555555544
No 239
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.52 E-value=0.3 Score=40.36 Aligned_cols=53 Identities=15% Similarity=0.046 Sum_probs=27.8
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 284 FCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
|-..|-++-|.--|.+..... |.-+.+||.|.-.+...|+++.|.+.|+...+
T Consensus 75 YDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E 127 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 127 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence 334444555555555554432 22344555555555566666666666665555
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.50 E-value=0.028 Score=48.31 Aligned_cols=94 Identities=11% Similarity=-0.021 Sum_probs=55.0
Q ss_pred HHccCcHHHHHHHHHhhccccCC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc-HHHHHHHHHHHHhcCC
Q 009977 140 FSNCSLHERVLEMFHKIHPITRE-KPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPN-TCIFNILIKHHCKRGT 217 (521)
Q Consensus 140 ~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 217 (521)
+.+.|++..|...|.......+. .-...++.-|..++...|+++.|...|..+.+.+.-.|. +..+..|.....+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 44456666666666655432222 222334445566666666666666666666554443333 3566666777777777
Q ss_pred hHHHHHHHHHHHhCCC
Q 009977 218 LESAFEVLKEMKKSQM 233 (521)
Q Consensus 218 ~~~A~~~~~~~~~~~~ 233 (521)
.++|..+|+++.+.-|
T Consensus 231 ~d~A~atl~qv~k~YP 246 (262)
T COG1729 231 TDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 7777777777776654
No 241
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.43 Score=40.31 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=24.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 009977 243 TLIDGLCKNGRFREAIELFEEMVSKDQ--ILPDALTYNVLIDGFCRGGKVDRAKKI 296 (521)
Q Consensus 243 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 296 (521)
..|-.+.-..++..|.+.++.-.+.++ -+.+..+...|+.+| ..|+.+++.++
T Consensus 195 a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 195 AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 334444445566666666655332221 122344455555544 34455544443
No 242
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.058 Score=48.97 Aligned_cols=92 Identities=15% Similarity=0.032 Sum_probs=43.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCC-------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHH
Q 009977 210 KHHCKRGTLESAFEVLKEMKKSQMS-------------YPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALT 276 (521)
Q Consensus 210 ~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 276 (521)
+.|.+.|++..|...|++....-.. ..-..+++.+..++.+.+++.+|++..++.+..+ ++|...
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~KA 293 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVKA 293 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchhH
Confidence 4555666666666665554331100 0112234444445555555555555555554432 344444
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 277 YNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
+..-..++...|+++.|+..|.++++.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 444444555555555555555555443
No 243
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.4 Score=42.47 Aligned_cols=114 Identities=17% Similarity=0.122 Sum_probs=49.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhCCCH
Q 009977 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDA----LTYNVLIDGFCRGGKV 290 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~ 290 (521)
.|+..+|-..++++.+..| .|..++.-.=.+|.-.|+...-...++++... ..+|. ..-....-++...|-+
T Consensus 116 ~g~~h~a~~~wdklL~d~P--tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYP--TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred cccccHHHHHHHHHHHhCc--hhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4444444444555444443 34444444444444455544444444444432 11221 1112222223344555
Q ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 009977 291 DRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFD 333 (521)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 333 (521)
++|++.-++..+.+ +.|...-.++...+-..|++.++.+...
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 55555555544443 3333344444444444555555544443
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.42 E-value=0.22 Score=38.56 Aligned_cols=64 Identities=14% Similarity=0.090 Sum_probs=40.2
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC
Q 009977 174 NLLIESNQVDLAQNFLKYSNQHLRLKP-NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN 237 (521)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 237 (521)
....+.|++++|.+.|+.+..+.-..+ ...+...|+.+|.+.|++++|...+++..+..|..|+
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 334455666666666666654332222 2345666777777777777777777777777766554
No 245
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.42 E-value=0.52 Score=40.40 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=28.4
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 247 GLCKNGRFREAIELFEEMVSKDQILP-DALTYNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
.-.+.|++++|.+.|+.+..+.+..| ...+...++-++.+.++++.|+..+++..+.
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 33455555566655555554432111 2233444445555555666665555555543
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.39 E-value=0.072 Score=39.86 Aligned_cols=92 Identities=14% Similarity=0.058 Sum_probs=60.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcC
Q 009977 387 GGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYA---TSNELLVRLCKAG 463 (521)
Q Consensus 387 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g 463 (521)
-+++..|+.+.|++.|.+.+..-++ ....||.-..++.-.|+.++|++-++++++..-.-... .|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3566778888888888877765333 66678888888877888888888887777542111221 2222334566677
Q ss_pred CHHHHHHHHHHHHHCC
Q 009977 464 MAEDAAIALFGLVEMG 479 (521)
Q Consensus 464 ~~~~a~~~~~~~~~~~ 479 (521)
+-+.|..-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7778888777777766
No 247
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.37 E-value=0.076 Score=49.45 Aligned_cols=68 Identities=15% Similarity=0.101 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 236 PNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDA-LTYNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 236 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
.+...|+.+..+|...|++++|+..|++.++.++..+.. .+|..+..+|...|+.++|++.++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567889999999999999999999999998864221111 46999999999999999999999999985
No 248
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.36 E-value=0.72 Score=41.38 Aligned_cols=62 Identities=10% Similarity=0.097 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhCCCHH---HHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009977 276 TYNVLIDGFCRGGKVD---RAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNF 338 (521)
Q Consensus 276 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 338 (521)
++..++.+|...+..+ +|..+++.+.... +..+.++..-+..+.+.++.+.+.+++.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4566666676666543 4455555554332 333445555566666677777777777777764
No 249
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.33 E-value=0.53 Score=44.32 Aligned_cols=99 Identities=15% Similarity=0.089 Sum_probs=57.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 009977 418 RIVLNFSCQKGELEKAIELLRLMLCRG-FLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES-DSWALLVELIC 495 (521)
Q Consensus 418 ~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 495 (521)
..+..++.+.|+.++|++.++++.+.. ...+..+...|+.++...+.+.++..++.+.-+...+... -+|...+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 345566667777777777777777431 1124445666777777777777777777665433222222 23333221112
Q ss_pred ccCc---------------HHHHHHHHHHHHHcCcc
Q 009977 496 RGRK---------------LLFAFELLDELVIKESG 516 (521)
Q Consensus 496 ~~g~---------------~~~A~~~~~~m~~~~~~ 516 (521)
..|+ ...|.+.++++++.+|.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 1222 23477888999888875
No 250
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.31 E-value=0.34 Score=46.29 Aligned_cols=157 Identities=11% Similarity=0.050 Sum_probs=82.7
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHH
Q 009977 70 KCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERV 149 (521)
Q Consensus 70 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 149 (521)
.-+++++++.+....-.-.+.++ ..-.+.++..+.+.|..+.|.++...- . .-.....+.|+.+.|
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCCHHHH
Confidence 34567777666654211111122 344666777777777777776653332 1 223445667777777
Q ss_pred HHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009977 150 LEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMK 229 (521)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 229 (521)
.++.++. .+...|..+.+.....|+++.|+..|.+.. -+..|+-.|.-.|+.+.-.++.+...
T Consensus 338 ~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----------d~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 338 LEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK----------DFSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc----------CccccHHHHHHhCCHHHHHHHHHHHH
Confidence 7765443 245577777777777777777777776552 34555666666777666666666555
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009977 230 KSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEM 264 (521)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 264 (521)
..|- ++....++.-.|+.++..+++.+.
T Consensus 401 ~~~~-------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 401 ERGD-------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HTT--------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HccC-------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5442 344444455556666666665543
No 251
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.31 E-value=0.24 Score=48.02 Aligned_cols=61 Identities=26% Similarity=0.186 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHH-HHHHHhcCCh-------HHHHHHHHHHHh
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTL-IDGLCKNGRF-------REAIELFEEMVS 266 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~-------~~A~~~~~~~~~ 266 (521)
.+--++-.+.-.++|++|.+.|..+.+... -+...|.-+ +.++...|+. ++|.++|.++..
T Consensus 307 ~~~El~w~~~~~~~w~~A~~~f~~L~~~s~--WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 307 CYFELAWCHMFQHDWEEAAEYFLRLLKESK--WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHHchHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 344445556666677777777777666543 233333322 2334445555 677777766643
No 252
>PRK11906 transcriptional regulator; Provisional
Probab=96.30 E-value=0.43 Score=44.74 Aligned_cols=146 Identities=16% Similarity=0.096 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 009977 324 KLQEAKEVFDEMKN-FLLKPD-TIGYTTLINCFCRA---------GRVDEALELLKEMKERGCKADIVTFNIILGGLCRE 392 (521)
Q Consensus 324 ~~~~A~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 392 (521)
..+.|..+|.+... ....|+ ...|..+..++... .+..+|.++-+...+.+.. |..+...+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 35678888888772 224555 44555544443321 2344666777777777654 777777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 009977 393 GKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPH---YATSNELLVRLCKAGMAEDAA 469 (521)
Q Consensus 393 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~ 469 (521)
++++.|...|++....++. ...+|......+.-.|+.++|.+.+++.++ +.|. ..+....++.|+.. ..++|+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 8888888888888776433 345555555566677888888888888763 4562 22333334455544 456777
Q ss_pred HHHHH
Q 009977 470 IALFG 474 (521)
Q Consensus 470 ~~~~~ 474 (521)
++|-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 77654
No 253
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.30 E-value=0.61 Score=39.99 Aligned_cols=69 Identities=12% Similarity=0.129 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhccC--CcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCH
Q 009977 97 TYATILDKLARYKKFEAVDAVLRQMTYETC--KFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSL 166 (521)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 166 (521)
.|+.-+ .-.+.|++++|.+.|+.+..+.+ +-...+...++.++.+.+++++|+..+++.....+.+|+.
T Consensus 37 LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 37 LYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 344333 34467888888888888876531 2234456667777778888888888888776666666664
No 254
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.26 E-value=1.2 Score=43.00 Aligned_cols=369 Identities=12% Similarity=0.035 Sum_probs=204.8
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH-hcCCchHHHHHHHHhhhc-cCC-cCHHHHHHHHHHHHc
Q 009977 66 ISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLA-RYKKFEAVDAVLRQMTYE-TCK-FHEGIFLNLMKHFSN 142 (521)
Q Consensus 66 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~ 142 (521)
...=.+-|..+.+.++|++.+ .+++.+...|...+..+. ..|+.+....+|+..... |.. .+...|...|..-..
T Consensus 86 A~~E~klg~~~~s~~Vfergv--~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~ 163 (577)
T KOG1258|consen 86 ADYEYKLGNAENSVKVFERGV--QAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENG 163 (577)
T ss_pred HHHHHHhhhHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhc
Confidence 333446688999999999975 367777777777766544 457778888888888765 222 234567778888788
Q ss_pred cCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHH---hc------CCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHH
Q 009977 143 CSLHERVLEMFHKIHPITREKPSLKAISTCLNLLI---ES------NQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHC 213 (521)
Q Consensus 143 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 213 (521)
++++.....+|+++.+ .|. ..++.....|. .. ...+++.++-.....+ ..-.
T Consensus 164 qks~k~v~~iyeRile----iP~-~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~--------------~~~~ 224 (577)
T KOG1258|consen 164 QKSWKRVANIYERILE----IPL-HQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAER--------------SKIT 224 (577)
T ss_pred cccHHHHHHHHHHHHh----hhh-hHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhh--------------hhcc
Confidence 8999999999999874 221 12222222111 11 1223333222221110 0000
Q ss_pred hcCCh-HHHHHHHHHHHhCCCCCCCHHHHHHHH-------HHHHhcCChHHHHHHHHHHHhcC------CCCCCHHHHHH
Q 009977 214 KRGTL-ESAFEVLKEMKKSQMSYPNLITYSTLI-------DGLCKNGRFREAIELFEEMVSKD------QILPDALTYNV 279 (521)
Q Consensus 214 ~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~ 279 (521)
..|.. +.-....+..-..+.. -....+.+. ..+...-...+..-.|+.-+... -.+++..+|..
T Consensus 225 ~~~~~~e~~~~~v~~~~~~s~~--l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~ 302 (577)
T KOG1258|consen 225 HSQEPLEELEIGVKDSTDPSKS--LTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRY 302 (577)
T ss_pred cccChhHHHHHHHhhccCccch--hhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHH
Confidence 01111 1111111111110000 000011111 11222223333334444443321 12334567888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcC
Q 009977 280 LIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINC-FCRAG 358 (521)
Q Consensus 280 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 358 (521)
-+..-...|+++.+.-+|++..-- +..-...|-..+.-....|+.+-|..++....+-..+..+. ...+-.. .-..|
T Consensus 303 yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~-i~L~~a~f~e~~~ 380 (577)
T KOG1258|consen 303 YLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPI-IHLLEARFEESNG 380 (577)
T ss_pred HhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcH-HHHHHHHHHHhhc
Confidence 888888999999999999988742 12233455555566666699999998888776643332222 2222222 33478
Q ss_pred CHHHHHHHHHHHHHcCCCCcHh-HHHHHHHHHHhcCCHHHHHH---HHHHHHHCCCccCHHHHHHHHH-----HHHcCCC
Q 009977 359 RVDEALELLKEMKERGCKADIV-TFNIILGGLCREGKIEEALG---MLEKLWYDGIYLNKASYRIVLN-----FSCQKGE 429 (521)
Q Consensus 359 ~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~---~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~ 429 (521)
+++.|..+++.+.+.- |+.. .-..-+....+.|..+.+.. ++..... |-. +......+.- .+.-.++
T Consensus 381 n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~-~~~i~~~l~~~~~r~~~~i~~d 456 (577)
T KOG1258|consen 381 NFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKE-NNGILEKLYVKFARLRYKIRED 456 (577)
T ss_pred cHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-ccc-CcchhHHHHHHHHHHHHHHhcC
Confidence 9999999999998774 4432 22333555667788887773 3333222 222 3333333322 2334689
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009977 430 LEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGM 464 (521)
Q Consensus 430 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 464 (521)
.+.|..++.++.+. ..++...|..+++.+...+.
T Consensus 457 ~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 457 ADLARIILLEANDI-LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCc
Confidence 99999999999864 45577778888887766553
No 255
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.22 E-value=1 Score=41.77 Aligned_cols=418 Identities=13% Similarity=0.120 Sum_probs=234.9
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhcc
Q 009977 79 LEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHP 158 (521)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 158 (521)
+++=+++ +.+ |.|..+|-.|++.+...+..++..+++++|... +|.-+.+|...+.+-....++..+..+|.+...
T Consensus 29 lrLRerI-kdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 29 LRLRERI-KDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHHh-hcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 4566666 443 678889999999999999999999999999864 466677888878777777899999999999863
Q ss_pred ccCCCCCHhHHHHHHHHHHhcC-----CH-HHHHHHHHHhhhcCCCCCcH-HHHHHHHHHHH---hcCC------hHHHH
Q 009977 159 ITREKPSLKAISTCLNLLIESN-----QV-DLAQNFLKYSNQHLRLKPNT-CIFNILIKHHC---KRGT------LESAF 222 (521)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~~-----~~-~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~---~~g~------~~~A~ 222 (521)
..-+...|...+.-..+.+ +- -...+.|+..+...++.|-. ..|+..+..+- ..|. +|...
T Consensus 105 ---k~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR 181 (660)
T COG5107 105 ---KSLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIR 181 (660)
T ss_pred ---hhccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 2444555655554333322 21 12234455554444566643 35555554432 2344 45566
Q ss_pred HHHHHHHhCCCCCCCH-HHHHHH------HHHH-Hh--cC----ChHHHHHHHHHHHhcC-C----CCCCHHHHHHH---
Q 009977 223 EVLKEMKKSQMSYPNL-ITYSTL------IDGL-CK--NG----RFREAIELFEEMVSKD-Q----ILPDALTYNVL--- 280 (521)
Q Consensus 223 ~~~~~~~~~~~~~~~~-~~~~~l------~~~~-~~--~g----~~~~A~~~~~~~~~~~-~----~~~~~~~~~~l--- 280 (521)
..+.++..... .+. ..|+.. +... ++ .| -+-.|...++++...- | .+.+..+++.+
T Consensus 182 ~~Y~ral~tP~--~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~ 259 (660)
T COG5107 182 NGYMRALQTPM--GNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAART 259 (660)
T ss_pred HHHHHHHcCcc--ccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccc
Confidence 67777765433 232 233211 1100 00 11 1445666666654310 1 11122222221
Q ss_pred --------HHHHHhC-----CC--HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 009977 281 --------IDGFCRG-----GK--VDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTI 345 (521)
Q Consensus 281 --------~~~~~~~-----~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 345 (521)
|.--... |+ .....-++++.... +...+.+|.---..+...++-+.|....+..... .|.
T Consensus 260 s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps-- 334 (660)
T COG5107 260 SDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS-- 334 (660)
T ss_pred ccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--
Confidence 1110000 00 01111122222221 1222333333333444566777777666554331 232
Q ss_pred HHHHHH-HHHHhcCCHHHHHHHHHHHHH--------------cCC---------------CCcHhHHHHHHHHHHhcCCH
Q 009977 346 GYTTLI-NCFCRAGRVDEALELLKEMKE--------------RGC---------------KADIVTFNIILGGLCREGKI 395 (521)
Q Consensus 346 ~~~~l~-~~~~~~~~~~~A~~~~~~~~~--------------~~~---------------~~~~~~~~~l~~~~~~~g~~ 395 (521)
.+..+ ..|.-.++-++....|+.... .+. ..-..+|...+..-.+....
T Consensus 335 -L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl 413 (660)
T COG5107 335 -LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGL 413 (660)
T ss_pred -hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhH
Confidence 11111 112222222222222221110 000 00123456666666777788
Q ss_pred HHHHHHHHHHHHCC-CccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHH
Q 009977 396 EEALGMLEKLWYDG-IYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYAT-SNELLVRLCKAGMAEDAAIALF 473 (521)
Q Consensus 396 ~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~ 473 (521)
+.|..+|-++.+.+ +.++...+++++..+ ..|+..-|..+|+--+.. -||... .+..+..+.+.++-+.|..+|+
T Consensus 414 ~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFe 490 (660)
T COG5107 414 EAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFE 490 (660)
T ss_pred HHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 99999999999887 566777888888865 468888999999876643 344444 3566777788999999999999
Q ss_pred HHHHCCCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCc
Q 009977 474 GLVEMGFKPE--SDSWALLVELICRGRKLLFAFELLDELVIKES 515 (521)
Q Consensus 474 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 515 (521)
...+. +..+ ...|..+++--..-|+...+..+=++|.+.-|
T Consensus 491 tsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 491 TSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 76642 1222 47888898888888999988888888776544
No 256
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.15 E-value=0.0073 Score=36.24 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 451 TSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 451 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
++..+...|.+.|++++|+++|+++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555666666666666666665554
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.14 E-value=0.85 Score=43.05 Aligned_cols=57 Identities=11% Similarity=-0.031 Sum_probs=25.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009977 172 CLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEM 228 (521)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 228 (521)
+..++-+.|+.++|.+.++++++......+..+...|+..+...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 333444445555555555555432211112234444555555555555555555444
No 258
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.97 E-value=0.021 Score=34.20 Aligned_cols=38 Identities=11% Similarity=0.090 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYST 243 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 243 (521)
++..+...|...|++++|.++|+++.+..| .|...|..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P--~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDP--DDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CCHHHHHH
Confidence 344555555556666666666666555554 34444443
No 259
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.94 E-value=1.1 Score=39.81 Aligned_cols=152 Identities=11% Similarity=-0.059 Sum_probs=80.8
Q ss_pred hcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHH----HHHHHHHhcCCH
Q 009977 107 RYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAIS----TCLNLLIESNQV 182 (521)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~~~~ 182 (521)
..|+..+|...++++++. .|-+--++...=.+|.-.|+.+.-...++++... -.++...|. .+.-++.+.|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 456667777777776654 3444445555555666667666666666666432 122322222 123344456777
Q ss_pred HHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHhcCChHHHHHH
Q 009977 183 DLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMS--YPNLITYSTLIDGLCKNGRFREAIEL 260 (521)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 260 (521)
++|++.-++..+- .+-|..+..++...+-..|+..++.++..+-...--. ..-..-|-...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 7777666665531 2335556666666666677777776666553221100 01111122233345555777777777
Q ss_pred HHH
Q 009977 261 FEE 263 (521)
Q Consensus 261 ~~~ 263 (521)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 754
No 260
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.80 E-value=0.75 Score=36.68 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=25.4
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 212 HCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 212 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
+...|.++......+.+...+.+ .-...-..|.-+-.+.|++.+|.++|..+..
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~-mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNP-MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccccHHHHHHHhhhccCCCCh-hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 34455555555544444332221 1222334444455555555555555555544
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.73 E-value=0.2 Score=37.56 Aligned_cols=90 Identities=22% Similarity=0.130 Sum_probs=56.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCccCH---HHHHHHHHHHHcCC
Q 009977 353 CFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYD-GIYLNK---ASYRIVLNFSCQKG 428 (521)
Q Consensus 353 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~---~~~~~l~~~~~~~g 428 (521)
++...|+.+.|++.|.+.+..-++ ....||.-.+++--.|+.++|++-+++..+. |.+ .. ..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 455667777777777776665433 5667777777777777777777777766654 322 21 22333344566677
Q ss_pred CHHHHHHHHHHHHHCC
Q 009977 429 ELEKAIELLRLMLCRG 444 (521)
Q Consensus 429 ~~~~a~~~~~~~~~~~ 444 (521)
+-+.|..-|+.+.+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777777666554
No 262
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.69 E-value=1.2 Score=38.38 Aligned_cols=225 Identities=22% Similarity=0.127 Sum_probs=128.9
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCcchHHHHHHHHHhcCCHHHHH
Q 009977 251 NGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN-GCNPNVFNYTTLMNGFCKEGKLQEAK 329 (521)
Q Consensus 251 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~ 329 (521)
.+....+...+...............+......+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35566666666666544211112456666677777777777777777766642 22344455666666677777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC--CCcHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 330 EVFDEMKNFLLKPDTIGYTTLIN-CFCRAGRVDEALELLKEMKERGC--KADIVTFNIILGGLCREGKIEEALGMLEKLW 406 (521)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 406 (521)
..+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7777776543332 122222222 56677777777777777754321 1123333344444556667777777777766
Q ss_pred HCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 407 YDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPH-YATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
..........+..+...+...++++.+...+...... .|+ ...+..+...+...+..+++...+.+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6522113455666666666667777777777776642 332 333344444444555667777666666654
No 263
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.62 E-value=0.83 Score=35.92 Aligned_cols=128 Identities=14% Similarity=0.166 Sum_probs=78.1
Q ss_pred CChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHH
Q 009977 60 ISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKH 139 (521)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (521)
.....++..+...+.+..+..+++++.... +.+...++.++..|++.+. .+....+.. . .+..-...+++.
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~ 78 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKL 78 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHH
Confidence 345567888888888999999999886553 3577788888888887643 333333332 1 111223356777
Q ss_pred HHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhc-CCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHH
Q 009977 140 FSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIES-NQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHC 213 (521)
Q Consensus 140 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 213 (521)
|.+.+.++++.-++.++. -+...+..+... ++++.|.++..+. .+...|..++..+.
T Consensus 79 c~~~~l~~~~~~l~~k~~----------~~~~Al~~~l~~~~d~~~a~~~~~~~-------~~~~lw~~~~~~~l 136 (140)
T smart00299 79 CEKAKLYEEAVELYKKDG----------NFKDAIVTLIEHLGNYEKAIEYFVKQ-------NNPELWAEVLKALL 136 (140)
T ss_pred HHHcCcHHHHHHHHHhhc----------CHHHHHHHHHHcccCHHHHHHHHHhC-------CCHHHHHHHHHHHH
Confidence 777777777777777663 123333444444 6667776666542 24456666665554
No 264
>PRK11906 transcriptional regulator; Provisional
Probab=95.58 E-value=1.3 Score=41.80 Aligned_cols=119 Identities=11% Similarity=0.048 Sum_probs=56.7
Q ss_pred cHHHHHHHHHhhccccCCCCCH-hHHHHHHHHHHh---------cCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHh
Q 009977 145 LHERVLEMFHKIHPITREKPSL-KAISTCLNLLIE---------SNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCK 214 (521)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 214 (521)
..+.|+.+|.+........|+. ..|..+..++.. ..+..+|.++-+...+. -+.|..+...+..+..-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHh
Confidence 3456666777765222333332 223222222211 12233444444444431 23345555555555555
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
.|+++.|..+|++....+| ....+|......+.-.|+.++|.+.+++..+.
T Consensus 351 ~~~~~~a~~~f~rA~~L~P--n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHST--DIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred hcchhhHHHHHHHHhhcCC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 5556666666666655554 23344444444455556666666666665544
No 265
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.54 E-value=2.2 Score=40.38 Aligned_cols=181 Identities=12% Similarity=0.088 Sum_probs=123.5
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHH
Q 009977 61 SHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHF 140 (521)
Q Consensus 61 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (521)
..-+++..+..+..++-...+-.+++.- ..+.-.|..++++|... ..++-..+++++.+..+ +......-+..+
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~---~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~~ 141 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEY---GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELADK 141 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHHH
Confidence 3445777788888888888888888644 45677788999999888 56778899999888763 334444433344
Q ss_pred HccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHh--cCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCCh
Q 009977 141 SNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIE--SNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTL 218 (521)
Q Consensus 141 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 218 (521)
...++.+++...|.++....-..........+..-+.. ..+.+....+...+....|...-...+..+-.-|....++
T Consensus 142 yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred HHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 44488888888888764211111111222223333333 5677888888888877666666677788888889999999
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009977 219 ESAFEVLKEMKKSQMSYPNLITYSTLIDGLC 249 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (521)
++|++++..+.+.+. .|+.+-..++.-+.
T Consensus 222 ~eai~Ilk~il~~d~--k~~~ar~~~i~~lR 250 (711)
T COG1747 222 TEAIRILKHILEHDE--KDVWARKEIIENLR 250 (711)
T ss_pred HHHHHHHHHHhhhcc--hhhhHHHHHHHHHH
Confidence 999999998888765 56666655655443
No 266
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.47 E-value=1 Score=35.95 Aligned_cols=124 Identities=16% Similarity=0.208 Sum_probs=68.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHH-HHHHH--HHHHHhCCC
Q 009977 213 CKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDAL-TYNVL--IDGFCRGGK 289 (521)
Q Consensus 213 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~~~ 289 (521)
.+.|..++|+.-|..+.+.|...-.+...........+.|+...|...|+++-... ..|-.. -...| .-.+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-SIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHHHhcccc
Confidence 45566677777777777666431222223334445666777777777777765432 222211 11111 122345667
Q ss_pred HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 290 VDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
++......+.+...+-+.....-..|.-+-.+.|++.+|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 777666666655444333333444566666677777777777777655
No 267
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.45 E-value=1.5 Score=37.81 Aligned_cols=227 Identities=23% Similarity=0.138 Sum_probs=142.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 009977 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAK 294 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 294 (521)
.+....+...+...............+......+...+.+..+...+...............+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666666666666654431113566677777788888888888888777642012444556666777777777888888
Q ss_pred HHHHHHHHcCCCCCcchHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 295 KIMEFMKNNGCNPNVFNYTTLMN-GFCKEGKLQEAKEVFDEMKNFLL--KPDTIGYTTLINCFCRAGRVDEALELLKEMK 371 (521)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 371 (521)
+.+.........+ ......... .+...|+++.|...+........ ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888777654222 222333333 67788888888888888755211 1123334444444566778888888888877
Q ss_pred HcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 009977 372 ERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCR 443 (521)
Q Consensus 372 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (521)
..........+..+...+...++++.+...+......... ....+..+...+...+..+++...+......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6532213556777777777788888888888877765322 2333444444444666788888887777743
No 268
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.30 E-value=2.5 Score=39.44 Aligned_cols=142 Identities=16% Similarity=0.189 Sum_probs=64.0
Q ss_pred HccCcHHHHHHHHHhhccccCCCCCH---hHH-HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcC
Q 009977 141 SNCSLHERVLEMFHKIHPITREKPSL---KAI-STCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRG 216 (521)
Q Consensus 141 ~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 216 (521)
-+.+++.++.++|.++.......|.. ..+ ..++++|. .++.+.....+....+..+-.+-...+- .-.+.+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s~~l~LF~--~L~~Y~~k 93 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKSAYLPLFK--ALVAYKQK 93 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCchHHHHHH--HHHHHHhh
Confidence 45678888888888775322222221 111 22334433 3444444444444443333222222222 22334566
Q ss_pred ChHHHHHHHHHHHhC--CCC--CCCHH---------HHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCHHHHHHH
Q 009977 217 TLESAFEVLKEMKKS--QMS--YPNLI---------TYSTLIDGLCKNGRFREAIELFEEMVSKD---QILPDALTYNVL 280 (521)
Q Consensus 217 ~~~~A~~~~~~~~~~--~~~--~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l 280 (521)
++.+|.+.+...... +.. ..|.. .=+..+.++...|++.++..+++++..+- ...-+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 677776666655443 111 00111 11334455556666666666666655431 011345555554
Q ss_pred HHHHH
Q 009977 281 IDGFC 285 (521)
Q Consensus 281 ~~~~~ 285 (521)
+-.+.
T Consensus 174 vlmls 178 (549)
T PF07079_consen 174 VLMLS 178 (549)
T ss_pred HHHHh
Confidence 44433
No 269
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.24 E-value=1.2 Score=35.41 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=28.9
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 212 HCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 212 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
-.+.++.+.+..+++.+.-..|..+...++..+ .+...|+|.+|+.+|+++...
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhcc
Confidence 344556666666666665554433333333332 355666666666666666443
No 270
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.14 E-value=0.27 Score=40.07 Aligned_cols=95 Identities=18% Similarity=0.074 Sum_probs=59.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCccC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 009977 386 LGGLCREGKIEEALGMLEKLWYDGIYLN----KASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHY-ATSNELLVRLC 460 (521)
Q Consensus 386 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 460 (521)
..-+...|++++|..-|..++..-+... ...|..-..++.+.+.++.|+.-..+.++ +.|+. ..+..-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHH
Confidence 3456778888888888888777522211 12344444566777888888887777774 34422 22222344677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH
Q 009977 461 KAGMAEDAAIALFGLVEMGFKPES 484 (521)
Q Consensus 461 ~~g~~~~a~~~~~~~~~~~~~~~~ 484 (521)
+...+++|+.-|.++++. .|..
T Consensus 180 k~ek~eealeDyKki~E~--dPs~ 201 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES--DPSR 201 (271)
T ss_pred hhhhHHHHHHHHHHHHHh--Ccch
Confidence 777788888888888776 3444
No 271
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.09 E-value=1.3 Score=34.86 Aligned_cols=126 Identities=13% Similarity=0.165 Sum_probs=70.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHH
Q 009977 98 YATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLI 177 (521)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 177 (521)
...++..+...+........++.+...+ +.+....+.++..|++.. .++.++.++. ..+......+++.|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 3456667766777888888888877776 356667777777777643 3444444442 122233445666666
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009977 178 ESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKR-GTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLC 249 (521)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (521)
+.+-++++.-++.++- -+...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~----------~~~~Al~~~l~~~~d~~~a~~~~~~~-------~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDG----------NFKDAIVTLIEHLGNYEKAIEYFVKQ-------NNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhc----------CHHHHHHHHHHcccCHHHHHHHHHhC-------CCHHHHHHHHHHHH
Confidence 6666666666665441 112223333333 5666666655531 34445655555443
No 272
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.04 E-value=4.3 Score=40.71 Aligned_cols=106 Identities=9% Similarity=0.017 Sum_probs=67.2
Q ss_pred HHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhc
Q 009977 136 LMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKR 215 (521)
Q Consensus 136 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (521)
=++.+.+.+.+++|+++.+..........-.......+..+...|++++|-...-.|.. .+..-|..-+..+...
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g-----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG-----NNAAEWELWVFKFAEL 436 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc-----chHHHHHHHHHHhccc
Confidence 35566777889999988877642111111345667778888888999888887777653 2555666666777666
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 009977 216 GTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCK 250 (521)
Q Consensus 216 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (521)
++......+ +. .+++..+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lP-t~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LP-TGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CC-CCCcccCchHHHHHHHHHHH
Confidence 665443332 22 23323456677777777766
No 273
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.97 E-value=2.1 Score=36.84 Aligned_cols=91 Identities=20% Similarity=0.251 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC---C-------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH
Q 009977 205 FNILIKHHCKRGTLESAFEVLKEMKKSQMS---Y-------PNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDA 274 (521)
Q Consensus 205 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 274 (521)
-..|...|...|++.+..+++.++...-.. . .-...|..-+..|....+-.+-..+|++.+.....-|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 345677777778887777777776542111 0 113445556666777777666667777665543344544
Q ss_pred HHHHHHHH----HHHhCCCHHHHHH
Q 009977 275 LTYNVLID----GFCRGGKVDRAKK 295 (521)
Q Consensus 275 ~~~~~l~~----~~~~~~~~~~a~~ 295 (521)
.....+-. +..+.|.+++|..
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHh
Confidence 44333322 2334566666643
No 274
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.95 E-value=0.081 Score=29.33 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 485 DSWALLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
..+..+...+...|++++|.+.|++.++.+|.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34566777777777777777777777776664
No 275
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.89 E-value=1.2 Score=33.70 Aligned_cols=61 Identities=18% Similarity=0.029 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 009977 453 NELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKE 514 (521)
Q Consensus 453 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 514 (521)
...++.+...|+-++-.+++..+.+.+ .++++....+..+|.+.|+..+|.+++.++-+++
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 334455556666666666665555322 4555666666666666666666666666665554
No 276
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.87 E-value=0.068 Score=29.37 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=24.7
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHcCccC
Q 009977 487 WALLVELICRGRKLLFAFELLDELVIKESGT 517 (521)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 517 (521)
+..++.++.+.|++++|.+.|++++++.|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4456777888888888888888888887764
No 277
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.75 E-value=5.1 Score=40.10 Aligned_cols=273 Identities=18% Similarity=0.075 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHh-------cCCCCCCHHHHHHHHHHHH
Q 009977 218 LESAFEVLKEMKKSQMSYPNLITYSTLIDG-----LCKNGRFREAIELFEEMVS-------KDQILPDALTYNVLIDGFC 285 (521)
Q Consensus 218 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~ 285 (521)
...|.++++...+.|. ......++.+ +....+.+.|+.+|+.+.+ . + .......+..+|.
T Consensus 228 ~~~a~~~~~~~a~~g~----~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~-~---~~~a~~~lg~~Y~ 299 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH----SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATK-G---LPPAQYGLGRLYL 299 (552)
T ss_pred hhHHHHHHHHHHhhcc----hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhh-c---CCccccHHHHHHh
Confidence 3567777777666543 2222222222 2345567777777777755 2 1 2234566666666
Q ss_pred hCC-----CHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--
Q 009977 286 RGG-----KVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKE---GKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFC-- 355 (521)
Q Consensus 286 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 355 (521)
+.. +...|..++...-+.| .|+... .+...+..- .+...|.++|......|.. ..+-.+..+|.
T Consensus 300 ~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G 373 (552)
T KOG1550|consen 300 QGLGVEKIDYEKALKLYTKAAELG-NPDAQY--LLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELG 373 (552)
T ss_pred cCCCCccccHHHHHHHHHHHHhcC-CchHHH--HHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhC
Confidence 643 5667888888777776 333322 333333322 3567888888887776533 22222222221
Q ss_pred --hcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHH-HHH---Hc---
Q 009977 356 --RAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVL-NFS---CQ--- 426 (521)
Q Consensus 356 --~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~--- 426 (521)
-..+.+.|..++++.-+.| .|...--...+..+.. ++.+.+.-.+..+...|.+ ...+-...+ ... ..
T Consensus 374 ~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~ 450 (552)
T KOG1550|consen 374 LGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRG 450 (552)
T ss_pred CCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccc
Confidence 2346778888888887776 2222222222333333 6666666666666555443 222211111 111 11
Q ss_pred -CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----cc
Q 009977 427 -KGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKA----GMAEDAAIALFGLVEMGFKPESDSWALLVELIC----RG 497 (521)
Q Consensus 427 -~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 497 (521)
..+...+...+......| +......+.+.|... .+++.|...+......+ ....-.+...+- -.
T Consensus 451 ~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~ 523 (552)
T KOG1550|consen 451 VISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIK 523 (552)
T ss_pred cccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcc
Confidence 224556666666665433 333444444444322 24677777777666553 222222222222 23
Q ss_pred CcHHHHHHHHHHHHHcCc
Q 009977 498 RKLLFAFELLDELVIKES 515 (521)
Q Consensus 498 g~~~~A~~~~~~m~~~~~ 515 (521)
. +..|.+++++..+.++
T Consensus 524 ~-~~~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 524 V-LHLAKRYYDQASEEDS 540 (552)
T ss_pred h-hHHHHHHHHHHHhcCc
Confidence 3 6778888877776543
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.68 E-value=0.055 Score=30.66 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=12.7
Q ss_pred HHHHHHHHHccCcHHHHHHHHHH
Q 009977 487 WALLVELICRGRKLLFAFELLDE 509 (521)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~ 509 (521)
|..|...|.+.|++++|.+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555556666666666655
No 279
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.62 E-value=0.086 Score=29.29 Aligned_cols=32 Identities=9% Similarity=0.000 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 485 DSWALLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
.+|..++.++...|++++|...|+++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666677777777777777777777776654
No 280
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.40 E-value=1.7 Score=33.02 Aligned_cols=63 Identities=13% Similarity=0.043 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009977 416 SYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMG 479 (521)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 479 (521)
.....+......|.-+.-.++++.+.+ .-.+++..+..+..+|.+.|+..++..++.++-+.|
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 344445555566666666666666554 235566666666666666666666666666666555
No 281
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.38 E-value=0.61 Score=41.01 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=47.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 009977 379 IVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLC-----RGFLPHYATSN 453 (521)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~ 453 (521)
..++..++..+...|+.+.+...++++....+. +...|..++.+|...|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 445666666677777777777777777666443 666677777777777777777777766654 25566555433
No 282
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.27 E-value=7.3 Score=39.91 Aligned_cols=230 Identities=13% Similarity=0.128 Sum_probs=120.9
Q ss_pred HHHccCcHHHHHHHHHhhccccCC---CCCHh---HHHHH-HHHHHhcCCHHHHHHHHHHhhhcC---CCCCcHHHHHHH
Q 009977 139 HFSNCSLHERVLEMFHKIHPITRE---KPSLK---AISTC-LNLLIESNQVDLAQNFLKYSNQHL---RLKPNTCIFNIL 208 (521)
Q Consensus 139 ~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~---~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l 208 (521)
.....+++.+|..++.++....+. .+... .+..+ ..+....|++++|.++-+...... ...+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 345568888888888776432221 11111 12222 223445788899988888776532 223356677888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCHH---HHHHH--HHHHHhcCC--hHHHHHHHHHHHhcCC--CC---CCHHH
Q 009977 209 IKHHCKRGTLESAFEVLKEMKKSQMSYPNLI---TYSTL--IDGLCKNGR--FREAIELFEEMVSKDQ--IL---PDALT 276 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~l--~~~~~~~g~--~~~A~~~~~~~~~~~~--~~---~~~~~ 276 (521)
..+..-.|++++|..+..+..+..-. -++. .|..+ ...+...|+ +.+.+..|........ .+ +-..+
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~-~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQ-HDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 88888999999999888876553221 2322 23322 334566773 3334444443322210 11 11233
Q ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCCcchH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHH
Q 009977 277 YNVLIDGFCRG-GKVDRAKKIMEFMKNNGCNPNVFNY--TTLMNGFCKEGKLQEAKEVFDEMKNFLLKP----DTIGYTT 349 (521)
Q Consensus 277 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~ 349 (521)
+..++.++.+. +...++..-+.........+-.... ..|+..+...|+.++|...++++......+ +..+-..
T Consensus 583 r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 583 RAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 44445555441 1222222323322222212222222 367788888999999999988876532222 2222222
Q ss_pred HH--HHHHhcCCHHHHHHHHHH
Q 009977 350 LI--NCFCRAGRVDEALELLKE 369 (521)
Q Consensus 350 l~--~~~~~~~~~~~A~~~~~~ 369 (521)
.+ ......|+.+++.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 22 234457888877766554
No 283
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.13 E-value=0.51 Score=40.79 Aligned_cols=48 Identities=17% Similarity=0.110 Sum_probs=34.8
Q ss_pred cHhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 009977 378 DIVTFNIILGGLCRE-----GKIEEALGMLEKLWYDGIYLNKASYRIVLNFSC 425 (521)
Q Consensus 378 ~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (521)
|..+|...+..+... +.++=....++.|.+.|+.-|..+|+.|+..+-
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfP 118 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFP 118 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCc
Confidence 667777777777543 456666667777888888888888888887764
No 284
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.09 E-value=2.8 Score=34.40 Aligned_cols=57 Identities=11% Similarity=-0.050 Sum_probs=25.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 009977 456 LVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKE 514 (521)
Q Consensus 456 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 514 (521)
.+.....|.+++|...++...+.+. .......-.+++...|+.++|+..|++.++.+
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3344455555555555443332211 11112223345555555555555555555553
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.00 E-value=0.92 Score=37.28 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccC--HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 009977 381 TFNIILGGLCREGKIEEALGMLEKLWYDGIYLN--KASYRIVLNFSCQKGELEKAIELLRLML 441 (521)
Q Consensus 381 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (521)
.+..++..|.+.|+.+.|.+.+.++......+. ...+..++......+++..+...+.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444555555555555555555555544322211 2233344444445555555555544443
No 286
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.89 E-value=4.7 Score=36.35 Aligned_cols=127 Identities=19% Similarity=0.208 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCCC---CcHhHHHHHHHHHHhcCC---
Q 009977 327 EAKEVFDEMKNFLLKPDTIGYTTLINCFCR--AG----RVDEALELLKEMKERGCK---ADIVTFNIILGGLCREGK--- 394 (521)
Q Consensus 327 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~--- 394 (521)
+...+++.+.+.|...+..+|-+....... .. ....|..+|+.|.+..+. ++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344555666666666554444332222211 11 234566666666665321 233444444332 2222
Q ss_pred -HHHHHHHHHHHHHCCCccCH--HHHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009977 395 -IEEALGMLEKLWYDGIYLNK--ASYRIVLNFSCQKGE--LEKAIELLRLMLCRGFLPHYATSNEL 455 (521)
Q Consensus 395 -~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l 455 (521)
.+.+..+++.+...|...+. .....++..+..... ..++.++++.+.+.|+++....|..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 23445555555555443322 222223322222211 33566666666666666655544433
No 287
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.86 E-value=15 Score=42.16 Aligned_cols=325 Identities=13% Similarity=0.074 Sum_probs=168.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCC-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009977 171 TCLNLLIESNQVDLAQNFLKYSNQHLR-LKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLC 249 (521)
Q Consensus 171 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (521)
.+..+-.+.+.+.+|...++.-..... -.-....+..+...|...+++|....+...-... |+ ....+....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~----~s---l~~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD----PS---LYQQILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC----cc---HHHHHHHHH
Confidence 344555677888888888887311100 0112234445555899999999888777641110 22 233445567
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHH-HHHHHhcCCHHHH
Q 009977 250 KNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTL-MNGFCKEGKLQEA 328 (521)
Q Consensus 250 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A 328 (521)
..|+++.|...|+.+...+ ++...+++.++......|.++...-..+-..... .+....++.+ +.+--+.++++..
T Consensus 1461 ~~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhh
Confidence 7899999999999998764 3446677777777777888887777666555432 2333333332 3333566677766
Q ss_pred HHHHHHHHhCCCCCCHHHHHH--HHHHHHhc--CCHHHHHHHHHHHHHcCCCC---------cHhHHHHHHHHHHhcCCH
Q 009977 329 KEVFDEMKNFLLKPDTIGYTT--LINCFCRA--GRVDEALELLKEMKERGCKA---------DIVTFNIILGGLCREGKI 395 (521)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~--~~~~~A~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~ 395 (521)
...+. .. +...|.. +...+.+. .+.-.-.+..+.+.+.-+.| -...|..++....-.. .
T Consensus 1538 e~~l~--~~-----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l 1609 (2382)
T KOG0890|consen 1538 ESYLS--DR-----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-L 1609 (2382)
T ss_pred hhhhh--cc-----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-H
Confidence 66554 11 1222222 22222222 11111112222222211100 1123333333322111 1
Q ss_pred HHHHHHHHHHHHC-CCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HCCCCC-----CHHHHHHHHHHHHhcCCHHHH
Q 009977 396 EEALGMLEKLWYD-GIYLNKASYRIVLNFSCQKGELEKAIELLRLML-CRGFLP-----HYATSNELLVRLCKAGMAEDA 468 (521)
Q Consensus 396 ~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~p-----~~~~~~~l~~~~~~~g~~~~a 468 (521)
+...+.+...... ...-+...|..-+.--....+..+-+-.+++.. .....| -..+|....+.....|.++.|
T Consensus 1610 ~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1610 ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 1111111111110 111122223222221111112222222222222 211222 456788888888889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 469 AIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
...+-++.+.+ -+..+...++.+...|+...|+.++++.++++=.
T Consensus 1690 ~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1690 QNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 98887777654 3456667788888999999999999999876433
No 288
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.83 E-value=0.94 Score=39.89 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCccCHHHHH
Q 009977 344 TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWY-----DGIYLNKASYR 418 (521)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 418 (521)
..++..++..+...|+.+.+...++++....+. +...|..++.+|.+.|+...|+..|+.+.. .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 345566677777777777777777777776544 667777788888888877777777776654 36777666655
Q ss_pred HHHHH
Q 009977 419 IVLNF 423 (521)
Q Consensus 419 ~l~~~ 423 (521)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55444
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.81 E-value=0.16 Score=28.69 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 009977 241 YSTLIDGLCKNGRFREAIELFEEM 264 (521)
Q Consensus 241 ~~~l~~~~~~~g~~~~A~~~~~~~ 264 (521)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555555555555555553
No 290
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.72 E-value=0.83 Score=43.98 Aligned_cols=99 Identities=20% Similarity=0.277 Sum_probs=48.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHH
Q 009977 213 CKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDR 292 (521)
Q Consensus 213 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 292 (521)
.+.|+++.|.++..+. .+..-|..|..+....|++..|.+.|.+... |..|+-.+...|+-+.
T Consensus 648 l~lgrl~iA~~la~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-------NSEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhcCcHHHHHHHHHhh-------cchHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhH
Confidence 3455555555554432 2344456666666666666666655554422 2334444455555544
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 009977 293 AKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDE 334 (521)
Q Consensus 293 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 334 (521)
...+-....+.| ..| ....+|...|+++++.+++.+
T Consensus 711 l~~la~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 711 LAVLASLAKKQG-KNN-----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHHhhc-ccc-----hHHHHHHHcCCHHHHHHHHHh
Confidence 444444444444 212 222334455555555555543
No 291
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.69 E-value=1.7 Score=35.73 Aligned_cols=98 Identities=8% Similarity=-0.013 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcC--HHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHH-
Q 009977 96 ATYATILDKLARYKKFEAVDAVLRQMTYETCKFH--EGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTC- 172 (521)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l- 172 (521)
..+..++..|.+.|+.+.|.+.|.++.+....+. ...+..+++.....|++..+...+.+.........++..-+.+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3466777777777888888777777766543322 3355567777777777777777766665432222222221111
Q ss_pred ---HHHHHhcCCHHHHHHHHHHhh
Q 009977 173 ---LNLLIESNQVDLAQNFLKYSN 193 (521)
Q Consensus 173 ---l~~~~~~~~~~~a~~~~~~~~ 193 (521)
.-.+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 112223566666665555443
No 292
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.43 E-value=9.3 Score=38.26 Aligned_cols=275 Identities=16% Similarity=0.039 Sum_probs=157.1
Q ss_pred HHHHHHHHHHhhhcCCCCCcHHHHHHHHHH-HHhcCChHHHHHHHHHHHh-------CCCCCCCHHHHHHHHHHHHhcC-
Q 009977 182 VDLAQNFLKYSNQHLRLKPNTCIFNILIKH-HCKRGTLESAFEVLKEMKK-------SQMSYPNLITYSTLIDGLCKNG- 252 (521)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g- 252 (521)
...|.++++.........+-...-...... +....+.+.|+.+|+.+.+ .+ .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~----~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG----LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc----CCccccHHHHHHhcCCC
Confidence 467888888775542222221122222222 4467789999999999876 33 2335666777777743
Q ss_pred ----ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHH----h
Q 009977 253 ----RFREAIELFEEMVSKDQILPDALTYNVLIDGFCRG---GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFC----K 321 (521)
Q Consensus 253 ----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 321 (521)
+.+.|..+|.+.-..+ .|+.... +...+... .+...|.++|....+.|. ...+..+..+|. .
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g--~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG--NPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGV 376 (552)
T ss_pred CccccHHHHHHHHHHHHhcC--CchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCc
Confidence 6677999999987763 4554433 33333322 467899999999999883 233334444443 2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH----Hh----cC
Q 009977 322 EGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGL----CR----EG 393 (521)
Q Consensus 322 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~----~g 393 (521)
..+...|..++.+..+.| .|....-...+..+.. ++++.+...+..+.+.|.. ...+-...+..- .. ..
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~ 453 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIS 453 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhcccccccccccc
Confidence 347889999999998876 2221211222223333 7777777777777666543 222222111111 01 12
Q ss_pred CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCH
Q 009977 394 KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQK----GELEKAIELLRLMLCRGFLPHYATSNELLVRLC----KAGMA 465 (521)
Q Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~ 465 (521)
+.+.+...+.+....| +......+...|..- .+++.|...+......+ ......+...+. -.. +
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~ 525 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-L 525 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-h
Confidence 4556666666665554 345555555554432 35778888888777554 222222333332 123 6
Q ss_pred HHHHHHHHHHHHC
Q 009977 466 EDAAIALFGLVEM 478 (521)
Q Consensus 466 ~~a~~~~~~~~~~ 478 (521)
..|.+++++..+.
T Consensus 526 ~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 526 HLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHHhc
Confidence 7788888877664
No 293
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.42 E-value=5.2 Score=35.29 Aligned_cols=118 Identities=8% Similarity=0.130 Sum_probs=72.1
Q ss_pred CcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHh-cCC-HHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHH
Q 009977 144 SLHERVLEMFHKIHPITREKPSLKAISTCLNLLIE-SNQ-VDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESA 221 (521)
Q Consensus 144 g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 221 (521)
....+|+++|+........-.|..+...+++.... .+. ...--++.+.+....+..++..+...++..++..++|.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 34556777776443212234556666677766665 222 2222244444444445666777777778888888888888
Q ss_pred HHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009977 222 FEVLKEMKKS-QMSYPNLITYSTLIDGLCKNGRFREAIELFE 262 (521)
Q Consensus 222 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 262 (521)
.++++..... ++. .|...|...+......|+..-..++.+
T Consensus 222 ~~fW~~~~~~~~~~-~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 222 FQFWEQCIPNSVPG-NDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHhcccCCCC-CCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 8777776655 333 677778888888888887665554443
No 294
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=2.1 Score=41.47 Aligned_cols=149 Identities=14% Similarity=0.169 Sum_probs=101.9
Q ss_pred cCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 009977 108 YKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQN 187 (521)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 187 (521)
.|+++.|..++..+. ......+++.+.+.|..++|+++- +|+.. -.....+.|+++.|.+
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s----------~D~d~---rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS----------TDPDQ---RFELALKLGRLDIAFD 658 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC----------CChhh---hhhhhhhcCcHHHHHH
Confidence 455555555444332 235567888888999999988753 22211 1234567899999998
Q ss_pred HHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 188 FLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
+..+. .+..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+.+....+-....+.
T Consensus 659 la~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 659 LAVEA-------NSEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred HHHhh-------cchHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 87765 3667899999999999999999999986543 555677777788876665555555444
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009977 268 DQILPDALTYNVLIDGFCRGGKVDRAKKIMEFM 300 (521)
Q Consensus 268 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 300 (521)
+ . .|....+|...|+++++.+++..-
T Consensus 722 g--~-----~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 722 G--K-----NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c--c-----cchHHHHHHHcCCHHHHHHHHHhc
Confidence 2 1 244445677889999998887643
No 295
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.40 E-value=0.91 Score=39.34 Aligned_cols=87 Identities=17% Similarity=0.241 Sum_probs=51.7
Q ss_pred CCcchHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------CHHHHHH
Q 009977 307 PNVFNYTTLMNGFCK-----EGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAG----------------RVDEALE 365 (521)
Q Consensus 307 ~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~A~~ 365 (521)
-|-.+|...+..+.. .+..+=.-..++.|.+.|+..|..+|+.|+..+-+.. +-+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 345566666655543 2445555556677777777778888887777653321 2233555
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 009977 366 LLKEMKERGCKADIVTFNIILGGLCREG 393 (521)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g 393 (521)
++++|...|+.||..+-..+++++.+.+
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 6666666666666666666666665554
No 296
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.25 E-value=0.15 Score=28.33 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHhcCChHHH
Q 009977 237 NLITYSTLIDGLCKNGRFREA 257 (521)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~A 257 (521)
+..+|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444555555555555555444
No 297
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.96 E-value=4.5 Score=33.27 Aligned_cols=91 Identities=20% Similarity=0.189 Sum_probs=59.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCcH----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009977 172 CLNLLIESNQVDLAQNFLKYSNQHLRLKPNT----CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDG 247 (521)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (521)
+...+...+++++|...++..+.. +.|. .+-..|.+.....|.+|+|+..++.....+. .......-+++
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w---~~~~~elrGDi 168 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW---AAIVAELRGDI 168 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH---HHHHHHHhhhH
Confidence 345667778888888877766532 2222 2334466777788888888888877655332 22233445677
Q ss_pred HHhcCChHHHHHHHHHHHhcC
Q 009977 248 LCKNGRFREAIELFEEMVSKD 268 (521)
Q Consensus 248 ~~~~g~~~~A~~~~~~~~~~~ 268 (521)
+...|+-++|..-|++.+...
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHcCchHHHHHHHHHHHHcc
Confidence 888888888888888887653
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.87 E-value=4 Score=32.47 Aligned_cols=15 Identities=47% Similarity=0.720 Sum_probs=6.0
Q ss_pred hcCCHHHHHHHHHHH
Q 009977 356 RAGRVDEALELLKEM 370 (521)
Q Consensus 356 ~~~~~~~A~~~~~~~ 370 (521)
..|++.+|+.+|+++
T Consensus 56 ~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 56 VRGDWDDALRLLREL 70 (160)
T ss_pred HhCCHHHHHHHHHHH
Confidence 334444444444443
No 299
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.81 E-value=13 Score=38.02 Aligned_cols=176 Identities=13% Similarity=0.155 Sum_probs=106.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHH----HHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHH
Q 009977 98 YATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMK----HFSNCSLHERVLEMFHKIHPITREKPSLKAISTCL 173 (521)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 173 (521)
...-+..+.+...++-|..+-+.-. .+......+.+ .+.+.|++++|...|-+-. .-..|+ .++
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~s-----~Vi 404 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI--GFLEPS-----EVI 404 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc--ccCChH-----HHH
Confidence 4456677777888888888766532 23334444444 4457799999999886654 222332 234
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009977 174 NLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGR 253 (521)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 253 (521)
.-+....+..+-..+++.+.+. |+ .+...-..|+.+|.+.++.++-.++.+... .|...-| ....+..+.+.+-
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~-gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~sny 478 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKK-GL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNY 478 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHc-cc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhCh
Confidence 4445555666666677776654 33 344456678899999999998888777654 3322123 2345666677777
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009977 254 FREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFM 300 (521)
Q Consensus 254 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 300 (521)
.++|..+-.+... .......+ +-..+++++|++++..+
T Consensus 479 l~~a~~LA~k~~~------he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 479 LDEAELLATKFKK------HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHHhcc------CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 7777766555422 22333333 33567788888777654
No 300
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.69 E-value=0.14 Score=28.48 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHccCcHHHHH
Q 009977 483 ESDSWALLVELICRGRKLLFAF 504 (521)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~A~ 504 (521)
+...|..+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 3456666666666666666654
No 301
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.53 E-value=4.1 Score=31.82 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=29.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 214 KRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 214 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
..++.+++..+++.|.-..|..+...++-..+ +...|+|++|+.+|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 35666666666666665554333444443333 55666777777777666544
No 302
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.51 E-value=5.6 Score=33.29 Aligned_cols=181 Identities=13% Similarity=0.059 Sum_probs=87.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 009977 214 KRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRA 293 (521)
Q Consensus 214 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 293 (521)
..|-++-|.-=|.+.....| .-+.+||-++--+...|+++.|.+.|+...+.+ +....+...-.-++.-.|++.-|
T Consensus 77 SlGL~~LAR~DftQaLai~P--~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 77 SLGLRALARNDFSQALAIRP--DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCC--CcHHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhh
Confidence 34444455555555555554 234567777777888888888888888887663 22222222222334446777777
Q ss_pred HHHHHHHHHcCCCCCcchHHHHH-HHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHH
Q 009977 294 KKIMEFMKNNGCNPNVFNYTTLM-NGFCKEGKLQEAKEVF-DEMKNFLLKPDTIGYTTLIN-CFCRAGRVDEALELLKEM 370 (521)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~~~~-~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~ 370 (521)
.+-+-..-+.+ +.|+ |..|- -.--+.-+..+|..-+ ++... .|..-|...+- .|...=..+. +++++
T Consensus 153 q~d~~~fYQ~D-~~DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e~---l~~~~ 222 (297)
T COG4785 153 QDDLLAFYQDD-PNDP--FRSLWLYLNEQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEET---LMERL 222 (297)
T ss_pred HHHHHHHHhcC-CCCh--HHHHHHHHHHhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHHH---HHHHH
Confidence 76666655543 2222 22221 1111223455555433 33332 23333333222 2221111111 23333
Q ss_pred HHcCCC------CcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 371 KERGCK------ADIVTFNIILGGLCREGKIEEALGMLEKLWYD 408 (521)
Q Consensus 371 ~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 408 (521)
...... .=..||--+..-+...|+.++|..+|+-....
T Consensus 223 ~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 223 KADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 221100 01235555666666677777777777666544
No 303
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.28 E-value=8.8 Score=35.28 Aligned_cols=98 Identities=10% Similarity=0.091 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHhcCC------------chHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccc
Q 009977 92 NHNNATYATILDKLARYKK------------FEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPI 159 (521)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 159 (521)
|.|..+|..++..--..-. .+.-..++++.++.+ +.+...+..++..+.+..+.++..+.++++..
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~- 93 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLF- 93 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-
Confidence 5567777776654322211 234455666666664 45556666677777766666776666766652
Q ss_pred cCCCCCHhHHHHHHHHHHh---cCCHHHHHHHHHHh
Q 009977 160 TREKPSLKAISTCLNLLIE---SNQVDLAQNFLKYS 192 (521)
Q Consensus 160 ~~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~ 192 (521)
..+.+...|...+..... .-.++....+|.+.
T Consensus 94 -~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 94 -KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred -HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 223344455555543332 12344444444443
No 304
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.24 E-value=2.1 Score=32.60 Aligned_cols=24 Identities=17% Similarity=0.025 Sum_probs=11.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 455 LLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 455 l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
|.-++.+.++++.+.++.+.+++.
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhh
Confidence 444445555555555555544443
No 305
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.93 E-value=16 Score=37.23 Aligned_cols=191 Identities=15% Similarity=0.004 Sum_probs=91.0
Q ss_pred hCCCHHHHHHHHHHHHHcCC-CCC-------cchHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHHH
Q 009977 286 RGGKVDRAKKIMEFMKNNGC-NPN-------VFNYTTLMNGFCKEGKLQEAKEVFD--------EMKNFLLKPDTIGYTT 349 (521)
Q Consensus 286 ~~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~~~~~~~~~ 349 (521)
-.+++..|...+..+.+... .|+ +..+...+-.+-..|+.+.|...|. .....+...+...+..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 46788888888888775321 111 2233333344456788999999987 4444444444333322
Q ss_pred H--HHHHH--hcCCHHH--HHHHHHHHHHc---CCCCcHhHHHHH-HHHHHhcC--CHHHHHHHHHHHH-----HCCC-c
Q 009977 350 L--INCFC--RAGRVDE--ALELLKEMKER---GCKADIVTFNII-LGGLCREG--KIEEALGMLEKLW-----YDGI-Y 411 (521)
Q Consensus 350 l--~~~~~--~~~~~~~--A~~~~~~~~~~---~~~~~~~~~~~l-~~~~~~~g--~~~~a~~~~~~~~-----~~~~-~ 411 (521)
+ +..+. ...+.++ +..+++.+... ....+..++..+ +.++.... ...++...+.... ..+. .
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 1 11222 2223333 67777766542 122233333333 33332211 1123333333222 1111 1
Q ss_pred cCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCC--CHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 412 LNKASYRIVLNFSCQKGELEKAIELLRLMLCRG-FLP--HYATSN-----ELLVRLCKAGMAEDAAIALFGLVE 477 (521)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~ 477 (521)
.-..+++.+...+. .|+..+............ -.| ....|. .+...+...|+.++|.....+...
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 11223333333333 677776665555433211 112 334442 234457788999999888776543
No 306
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.84 E-value=0.51 Score=41.94 Aligned_cols=97 Identities=11% Similarity=-0.059 Sum_probs=62.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009977 384 IILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAG 463 (521)
Q Consensus 384 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 463 (521)
--..-|.+.|.+++|++.+.......+. ++.++..-..+|.+...+..|..-...++... +.-...|..-+.+-...|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 3466788899999999999887765322 77788888888888888888877777666321 111122333333333455
Q ss_pred CHHHHHHHHHHHHHCCCCCCH
Q 009977 464 MAEDAAIALFGLVEMGFKPES 484 (521)
Q Consensus 464 ~~~~a~~~~~~~~~~~~~~~~ 484 (521)
...+|.+-++..++. .|+.
T Consensus 180 ~~~EAKkD~E~vL~L--EP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLAL--EPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhh--Cccc
Confidence 667777777776665 5654
No 307
>PRK09687 putative lyase; Provisional
Probab=91.77 E-value=9.4 Score=34.24 Aligned_cols=233 Identities=12% Similarity=0.046 Sum_probs=112.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHcCCCCCcch
Q 009977 236 PNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKV----DRAKKIMEFMKNNGCNPNVFN 311 (521)
Q Consensus 236 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 311 (521)
+|.......+.++...|. +++...+..+... +|...-...+.++...|+. +++...+..+... .++..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS----KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 666666666667666664 3344444444332 3445555556666666653 3455555555332 345545
Q ss_pred HHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 009977 312 YTTLMNGFCKEGKL-----QEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIIL 386 (521)
Q Consensus 312 ~~~l~~~~~~~~~~-----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 386 (521)
-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ ++++..+-.+.+. ++...-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 54555555444321 122333333222 2344444455555555554 3455555555442 2333444444
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 009977 387 GGLCREG-KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMA 465 (521)
Q Consensus 387 ~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 465 (521)
.++.+.+ +...+...+..+... ++..+-...+.++.+.|+ ..++..+-+..+.+ + .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 4444432 133444444444432 344555555666666665 34444444444321 2 223455566666664
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009977 466 EDAAIALFGLVEMGFKPESDSWALLVELI 494 (521)
Q Consensus 466 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 494 (521)
+|...+.++.+. .||..+-...++++
T Consensus 252 -~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 -TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred -hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 466666665543 24555544444443
No 308
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.70 E-value=0.42 Score=26.37 Aligned_cols=30 Identities=10% Similarity=0.024 Sum_probs=20.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCc
Q 009977 486 SWALLVELICRGRKLLFAFELLDELVIKES 515 (521)
Q Consensus 486 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 515 (521)
+|..+...|...|++++|.+.|++.++-++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455666667777777777777777766554
No 309
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.53 E-value=6.3 Score=31.80 Aligned_cols=99 Identities=16% Similarity=0.229 Sum_probs=61.0
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHcc--CcHHHHHHHHHhhc
Q 009977 80 EIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNC--SLHERVLEMFHKIH 157 (521)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~ 157 (521)
++...+ ...+++++...+..+++.+.+.|++....+++.- ++-+|.......+-.+... .-..-+++++.++.
T Consensus 15 EYirSl-~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~----~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 15 EYIRSL-NQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY----HVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHH-HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh----cccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 344444 4567888888999999999999987765555443 4444444443333222221 22445566666653
Q ss_pred cccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 009977 158 PITREKPSLKAISTCLNLLIESNQVDLAQNFLKYS 192 (521)
Q Consensus 158 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 192 (521)
..+..+++.+...|++-+|.++.+..
T Consensus 90 ---------~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 90 ---------TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---------hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 14566677777888888888877654
No 310
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.26 E-value=3.1 Score=34.26 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=41.2
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 009977 248 LCKNGRFREAIELFEEMVSKDQILPD-----ALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKE 322 (521)
Q Consensus 248 ~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 322 (521)
+..+|++++|..-|..++... ++. ...|..-..++.+.+.++.|+.-....++.+ +........-..+|.+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c--p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC--PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC--ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 445566666666666555532 221 1223333444555555555555555555543 21222222223445555
Q ss_pred CCHHHHHHHHHHHHh
Q 009977 323 GKLQEAKEVFDEMKN 337 (521)
Q Consensus 323 ~~~~~A~~~~~~~~~ 337 (521)
..+++|++=|..+.+
T Consensus 182 ek~eealeDyKki~E 196 (271)
T KOG4234|consen 182 EKYEEALEDYKKILE 196 (271)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555554
No 311
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.88 E-value=20 Score=36.48 Aligned_cols=433 Identities=13% Similarity=0.094 Sum_probs=212.3
Q ss_pred HHHHHHHhhhCCCCCCC--HHHHHHHHHHHH-hcCCchHHHHHHHHhhhccCCcCH-----HHHHHHHHHHHccCcHHHH
Q 009977 78 ALEIFNTVSEQKGFNHN--NATYATILDKLA-RYKKFEAVDAVLRQMTYETCKFHE-----GIFLNLMKHFSNCSLHERV 149 (521)
Q Consensus 78 A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a 149 (521)
|++-++-+.+...++|. ..++..++..|. ...+++.|+..+++.....-.++- ..-..+++.|.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 55556655444434443 345666777766 668899999999877544322111 12224567777777666 8
Q ss_pred HHHHHhhccccCCCC-CH--hHHHHH-HHHHHhcCCHHHHHHHHHHhhhcCC--CCCcHHHHHHHHHHHH--hcCChHHH
Q 009977 150 LEMFHKIHPITREKP-SL--KAISTC-LNLLIESNQVDLAQNFLKYSNQHLR--LKPNTCIFNILIKHHC--KRGTLESA 221 (521)
Q Consensus 150 ~~~~~~~~~~~~~~~-~~--~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~--~~g~~~~A 221 (521)
...+++..+.....+ .. ..+..+ +..+...++...|.+.++.+..... ..|...++..++.+.. +.+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 888777543332211 11 223333 3333334799999999988765433 2333444444544443 45656777
Q ss_pred HHHHHHHHhCCC--------CCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHh---cCCCC-----------------
Q 009977 222 FEVLKEMKKSQM--------SYPNLITYSTLIDGL--CKNGRFREAIELFEEMVS---KDQIL----------------- 271 (521)
Q Consensus 222 ~~~~~~~~~~~~--------~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~---~~~~~----------------- 271 (521)
.+.++++..... ..|-..+|..++..+ ...|+++.+...++++.. .....
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~ 278 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIG 278 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecc
Confidence 777776632111 113456666666544 457776666665554432 10000
Q ss_pred ---------CCHH---------HHHHHHH--HHHhCCCHHHHHHHHHHHHH--------cCCCCCc--------chHHHH
Q 009977 272 ---------PDAL---------TYNVLID--GFCRGGKVDRAKKIMEFMKN--------NGCNPNV--------FNYTTL 315 (521)
Q Consensus 272 ---------~~~~---------~~~~l~~--~~~~~~~~~~a~~~~~~~~~--------~~~~~~~--------~~~~~l 315 (521)
+... .+.-++. ..+..+..++|.+++++..+ ....+.. ..|...
T Consensus 279 ~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~ 358 (608)
T PF10345_consen 279 EGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRY 358 (608)
T ss_pred cccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHH
Confidence 1111 1111122 22334444466555554432 1111111 111111
Q ss_pred H---------HHHHhcCCHHHHHHHHHHHHhCCC-CCC-----HHHHHHHH--HHHHhcCCHHHHHHHHH--------HH
Q 009977 316 M---------NGFCKEGKLQEAKEVFDEMKNFLL-KPD-----TIGYTTLI--NCFCRAGRVDEALELLK--------EM 370 (521)
Q Consensus 316 ~---------~~~~~~~~~~~A~~~~~~~~~~~~-~~~-----~~~~~~l~--~~~~~~~~~~~A~~~~~--------~~ 370 (521)
+ -..+-.+++..|...+..+....- .|+ ...+...+ -.+...|+.+.|...|. ..
T Consensus 359 l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~ 438 (608)
T PF10345_consen 359 LQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAA 438 (608)
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhh
Confidence 1 222457889999999988875321 111 12222222 23455799999999997 44
Q ss_pred HHcCCCCcHhHHHHH--HHHHHhcC--CHHH--HHHHHHHHHHC-CCcc--CHHHHH-HHHHHHHcC--CCHHHHHHHHH
Q 009977 371 KERGCKADIVTFNII--LGGLCREG--KIEE--ALGMLEKLWYD-GIYL--NKASYR-IVLNFSCQK--GELEKAIELLR 438 (521)
Q Consensus 371 ~~~~~~~~~~~~~~l--~~~~~~~g--~~~~--a~~~~~~~~~~-~~~~--~~~~~~-~l~~~~~~~--g~~~~a~~~~~ 438 (521)
...+...+...+..+ +-.+...+ ..++ +.++++.+... .-.| +..++. .++.++... -...++...+.
T Consensus 439 ~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~ 518 (608)
T PF10345_consen 439 NRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQ 518 (608)
T ss_pred ccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Confidence 444444344433322 12222222 2223 66666665442 1122 222333 333333221 11224444444
Q ss_pred HHHHC---CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHHH-----HHHHHHHccCcHHHHH
Q 009977 439 LMLCR---GFLP---HYATSNELLVRLCKAGMAEDAAIALFGLVEMGF-KP--ESDSWA-----LLVELICRGRKLLFAF 504 (521)
Q Consensus 439 ~~~~~---~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~-----~l~~~~~~~g~~~~A~ 504 (521)
+.++. .... -..+++.+...+. .|+..+............. .| ....|. .+.+.+...|+.++|.
T Consensus 519 ~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~ 597 (608)
T PF10345_consen 519 EALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAE 597 (608)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 33321 1111 1122232333333 6787776655554432111 12 334553 3334567789999999
Q ss_pred HHHHHHHH
Q 009977 505 ELLDELVI 512 (521)
Q Consensus 505 ~~~~~m~~ 512 (521)
....+...
T Consensus 598 ~~~~~~~~ 605 (608)
T PF10345_consen 598 EARQQLDR 605 (608)
T ss_pred HHHHHHHH
Confidence 98877653
No 312
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.86 E-value=0.013 Score=46.54 Aligned_cols=84 Identities=14% Similarity=0.261 Sum_probs=58.7
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccC
Q 009977 65 AISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCS 144 (521)
Q Consensus 65 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 144 (521)
++..+.+.+.+..+..+++.+... +...+...++.++..|++.++.+.....++.... . -...+++.+.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~--y-----d~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN--Y-----DLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS--S------CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHcccccc--c-----CHHHHHHHHHhcc
Confidence 566777788888888888888643 2235688889999999999887887777773222 1 1235677777778
Q ss_pred cHHHHHHHHHhh
Q 009977 145 LHERVLEMFHKI 156 (521)
Q Consensus 145 ~~~~a~~~~~~~ 156 (521)
.+++|.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 888888777765
No 313
>PRK09687 putative lyase; Provisional
Probab=90.66 E-value=12 Score=33.52 Aligned_cols=233 Identities=12% Similarity=0.056 Sum_probs=114.5
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHhcCCCCCCHH
Q 009977 200 PNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRF----REAIELFEEMVSKDQILPDAL 275 (521)
Q Consensus 200 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~ 275 (521)
+|..+....+..+...|. +.+...+..+... +|...-...+.++...|+. .++...+..+... .++..
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~d~~ 106 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS----KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DKSAC 106 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CCCHH
Confidence 344444445555555554 2333333333321 3444444455555555542 3455555555332 23444
Q ss_pred HHHHHHHHHHhCCCH-----HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 009977 276 TYNVLIDGFCRGGKV-----DRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTL 350 (521)
Q Consensus 276 ~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 350 (521)
.-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ ..+...+..+.+ .++...-...
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A 179 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWA 179 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHH
Confidence 444444444443321 122333333222 2344555566666666665 345555555554 2344444444
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCC
Q 009977 351 INCFCRAG-RVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGE 429 (521)
Q Consensus 351 ~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (521)
+.++.+.+ +...+...+..+... ++...-...+.++.+.|+. .+...+-...+.+. .....+.++...|+
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~ 250 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGD 250 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCC
Confidence 44444432 233555555555532 3555666667777777763 55555555554422 23356666777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009977 430 LEKAIELLRLMLCRGFLPHYATSNELLVRL 459 (521)
Q Consensus 430 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 459 (521)
. +|+..+..+.+. .||..+-...+.+|
T Consensus 251 ~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 251 K-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred H-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 4 577777777642 34555544444443
No 314
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.38 E-value=17 Score=34.83 Aligned_cols=167 Identities=12% Similarity=0.102 Sum_probs=86.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 009977 270 ILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTT 349 (521)
Q Consensus 270 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 349 (521)
.+.|.....+++..+.....+.-.+.+..+|+..| .+-..+..++++|... ..++-..+|+++.+..+. |...-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 34455566666666666666666666677776654 3455666666766666 445556666666654322 3333344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC--Cc---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCccCHHHHHHHHHH
Q 009977 350 LINCFCRAGRVDEALELLKEMKERGCK--AD---IVTFNIILGGLCREGKIEEALGMLEKLWYD-GIYLNKASYRIVLNF 423 (521)
Q Consensus 350 l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 423 (521)
|+..|-+ ++.+.+..+|..+...-+. .+ ...|..+...- ..+.+..+.+..++... |...-...+.-+-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 4444433 6666666666666543211 00 11232222211 23445555555555443 222223334444455
Q ss_pred HHcCCCHHHHHHHHHHHHHC
Q 009977 424 SCQKGELEKAIELLRLMLCR 443 (521)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~ 443 (521)
|....++++|++++..+++.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 215 YSENENWTEAIRILKHILEH 234 (711)
T ss_pred hccccCHHHHHHHHHHHhhh
Confidence 55566666666666665543
No 315
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.30 E-value=0.82 Score=25.07 Aligned_cols=28 Identities=18% Similarity=-0.001 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 451 TSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 451 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
.+..+...+...|++++|++.|++.++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3444555556666666666666655543
No 316
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.26 E-value=42 Score=39.04 Aligned_cols=321 Identities=13% Similarity=0.103 Sum_probs=164.6
Q ss_pred HHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHH-HHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHH
Q 009977 135 NLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCL-NLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHC 213 (521)
Q Consensus 135 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 213 (521)
.+..+-.+++.+.+|+-.+++-......+-....+..++ ..|...+++|....+...... +...+. -+....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a------~~sl~~-qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA------DPSLYQ-QILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc------CccHHH-HHHHHH
Confidence 455566788999999999998421111111222333444 489999999988877763211 222333 344567
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHH-HHHHHhCCCHHH
Q 009977 214 KRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVL-IDGFCRGGKVDR 292 (521)
Q Consensus 214 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~ 292 (521)
..|++..|...|+.+...++ +...+++.++......|.++..+...+-.... ..+....++.+ +.+--+.++++.
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p--~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~--~se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDP--DKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN--RSEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCC--ccccchhhHHHhhhcccchhHHHhhhcchhhc--cCHHHHHHHHHHHHHHhhhcchhh
Confidence 79999999999999998876 45778888888888888888888776665443 23333333333 334456777777
Q ss_pred HHHHHHHHHHcCCCCCcchHHH--HHHHHHhcCCHHH--HHHHHHHHHhCCCCC---------CHHHHHHHHHHHHhcCC
Q 009977 293 AKKIMEFMKNNGCNPNVFNYTT--LMNGFCKEGKLQE--AKEVFDEMKNFLLKP---------DTIGYTTLINCFCRAGR 359 (521)
Q Consensus 293 a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~--A~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~ 359 (521)
...... . -+..+|.. ++....+...-+. -.+..+.+.+.-+.| -...|..++....-..-
T Consensus 1537 ~e~~l~---~----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el 1609 (2382)
T KOG0890|consen 1537 LESYLS---D----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL 1609 (2382)
T ss_pred hhhhhh---c----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 766655 1 12222322 2333332222111 111222221110110 01334444433322111
Q ss_pred HHHHHHHHHHHH-HcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCcc-----CHHHHHHHHHHHHcCCCHHH
Q 009977 360 VDEALELLKEMK-ERGCKADIVTFNIILGGLCREGKIEEALGMLEKLW-YDGIYL-----NKASYRIVLNFSCQKGELEK 432 (521)
Q Consensus 360 ~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~-----~~~~~~~l~~~~~~~g~~~~ 432 (521)
..... .+.... .....-+..-|..-+..-....+..+-+--+++.. .....| -...|....+.....|+++.
T Consensus 1610 ~~~~~-~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1610 ENSIE-ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred HHHHH-HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 11111 000000 00000111122222221111111112111111111 111111 23567777777777888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 433 AIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVE 477 (521)
Q Consensus 433 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 477 (521)
|...+-.+.+.+ . +..+...+..+...|+...|+.++++-++
T Consensus 1689 A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1689 AQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 887777776544 2 33445566777888888888888887774
No 317
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.17 E-value=16 Score=34.09 Aligned_cols=64 Identities=20% Similarity=0.138 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---cHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 344 TIGYTTLINCFCRAGRVDEALELLKEMKERGCKA---DIVTFNIILGGLCREGKIEEALGMLEKLWY 407 (521)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 407 (521)
..+|..++..+.+.|.++.|...+..+...+... .+.....-+..+-..|+..+|+..++....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5567777777778888888888777776643211 233444445566667777788877777766
No 318
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.05 E-value=0.79 Score=26.64 Aligned_cols=28 Identities=21% Similarity=0.146 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 009977 485 DSWALLVELICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 512 (521)
.+++.+...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566677777777777777777776654
No 319
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.94 E-value=0.92 Score=24.95 Aligned_cols=27 Identities=22% Similarity=0.490 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 240 TYSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 240 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
+|..++.++...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344555555555555555555555544
No 320
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.67 E-value=8.1 Score=31.41 Aligned_cols=96 Identities=14% Similarity=0.097 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---CC-------hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC
Q 009977 218 LESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKN---GR-------FREAIELFEEMVSKDQILPDALTYNVLIDGFCRG 287 (521)
Q Consensus 218 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~-------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (521)
++.|.+.++.-...+| .|...++....++... .. +++|+.-|++.+..+ |-...++..+..+|...
T Consensus 7 FE~ark~aea~y~~nP--~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~--P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNP--LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN--PNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-T--T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc--HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHH
Confidence 3455555555555554 4555544444433332 22 334444455554432 22234555555555443
Q ss_pred C----C-------HHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 009977 288 G----K-------VDRAKKIMEFMKNNGCNPNVFNYTTLMNGF 319 (521)
Q Consensus 288 ~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (521)
+ + +++|...|++..+. .|+..+|+.-+...
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 2 1 33344444444443 45555555554443
No 321
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.63 E-value=32 Score=36.83 Aligned_cols=138 Identities=20% Similarity=0.143 Sum_probs=77.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 009977 311 NYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIG----YTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIIL 386 (521)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 386 (521)
.|...++.--+.|.+.+|..++. |+... |.+....+.+...+++|.-+|+..-+ ....+
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl 972 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKAL 972 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHH
Confidence 33444444445555666655543 34333 33444445556777777666654321 22345
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 009977 387 GGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAE 466 (521)
Q Consensus 387 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 466 (521)
.+|..+|++.+|+.+..++.....+ -..+-..|+.-+...+++-+|-++..+... .|.. .+..+++...|+
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d~~~-----av~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRKHYEAAKILLEYLS---DPEE-----AVALLCKAKEWE 1043 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccchhHHHHHHHHhc---CHHH-----HHHHHhhHhHHH
Confidence 6777788888888877766432111 111224566667777888777777776652 2222 344566666777
Q ss_pred HHHHHHHH
Q 009977 467 DAAIALFG 474 (521)
Q Consensus 467 ~a~~~~~~ 474 (521)
+|.++...
T Consensus 1044 eAlrva~~ 1051 (1265)
T KOG1920|consen 1044 EALRVASK 1051 (1265)
T ss_pred HHHHHHHh
Confidence 77776543
No 322
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.56 E-value=5.7 Score=33.28 Aligned_cols=77 Identities=8% Similarity=0.047 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccC-CCCCHhHHHHHHHH
Q 009977 98 YATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITR-EKPSLKAISTCLNL 175 (521)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~ll~~ 175 (521)
.+..++.+.+.++..+++.+.+.-++.. |.+......+++.|+-.|++++|..-++-.-.+.. ..+....|..++++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445667778888888888888777665 55666777888888999999998877766533221 23444556666554
No 323
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.36 E-value=18 Score=33.66 Aligned_cols=66 Identities=12% Similarity=0.029 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 272 PDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNP---NVFNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 272 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
....+|..++..+.+.|.++.|...+..+...+... .+.+...-++..-..|+..+|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888889999999999999998887643221 445566667788888999999998887766
No 324
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.35 E-value=29 Score=35.90 Aligned_cols=228 Identities=14% Similarity=0.110 Sum_probs=123.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCH-------HHHHHHH-HHHHhcCChHHHHHHHHHHHhcC---CCCCCHHHHHH
Q 009977 211 HHCKRGTLESAFEVLKEMKKSQMSYPNL-------ITYSTLI-DGLCKNGRFREAIELFEEMVSKD---QILPDALTYNV 279 (521)
Q Consensus 211 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~ 279 (521)
......++++|..++.++...-+. |+. ..|+.+- ......|++++|+++.+.....- ...+....+..
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~-~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKA-PMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCc-CcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 344578899999999887654332 221 2344332 23455788999999988887642 12334556677
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHH-----HHHHHhcCCHH--HHHHHHHHHHhCC--CCC----CHHH
Q 009977 280 LIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTL-----MNGFCKEGKLQ--EAKEVFDEMKNFL--LKP----DTIG 346 (521)
Q Consensus 280 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~--~A~~~~~~~~~~~--~~~----~~~~ 346 (521)
+..+..-.|++++|..+..+..+....-+...+..+ ...+...|+.. +.+..|....... -+| -..+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 777888889999999988877664323333333222 23345566333 3333333332210 011 1234
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCcHhH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCc----cCHHHHHH
Q 009977 347 YTTLINCFCR-AGRVDEALELLKEMKERGCKADIVT--FNIILGGLCREGKIEEALGMLEKLWYDGIY----LNKASYRI 419 (521)
Q Consensus 347 ~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~ 419 (521)
...++.++.+ .+...++..-++--......|-... +..++......|+.++|...+.++...... ++...-..
T Consensus 583 r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 583 RAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4445555544 1222222222222222222222222 236677788899999999999888764222 22222222
Q ss_pred HHH--HHHcCCCHHHHHHHHHH
Q 009977 420 VLN--FSCQKGELEKAIELLRL 439 (521)
Q Consensus 420 l~~--~~~~~g~~~~a~~~~~~ 439 (521)
.+. .-...|+..++.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 222 22356888777776665
No 325
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.29 E-value=0.01 Score=47.12 Aligned_cols=85 Identities=12% Similarity=0.130 Sum_probs=57.3
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhc
Q 009977 100 TILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIES 179 (521)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (521)
.++..+.+.+.+..+..+++.+...+...+......++..|++.+..++..+.++... ..-...+++.|.+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--------~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--------NYDLDKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--------SS-CTHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--------ccCHHHHHHHHHhc
Confidence 3566677778888888888888876655667778889999999877777777765321 12334556666667
Q ss_pred CCHHHHHHHHHHh
Q 009977 180 NQVDLAQNFLKYS 192 (521)
Q Consensus 180 ~~~~~a~~~~~~~ 192 (521)
|-++++.-++.++
T Consensus 84 ~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 84 GLYEEAVYLYSKL 96 (143)
T ss_dssp TSHHHHHHHHHCC
T ss_pred chHHHHHHHHHHc
Confidence 7776666666543
No 326
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.29 E-value=21 Score=34.20 Aligned_cols=414 Identities=11% Similarity=0.114 Sum_probs=211.3
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHc-cCcHHHHHHHH
Q 009977 75 PQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSN-CSLHERVLEMF 153 (521)
Q Consensus 75 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~ 153 (521)
+.+...+|..+.. .++.|+..|...+..+.+.+.+.+...+|.+|.... |.++..|......... .-..+.|..+|
T Consensus 87 ~~rIv~lyr~at~--rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalf 163 (568)
T KOG2396|consen 87 PNRIVFLYRRATN--RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALF 163 (568)
T ss_pred HHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHH
Confidence 4456777777753 357799999999999888888999999999999875 6677777765554443 34489999999
Q ss_pred HhhccccCCCCCHhHHHHHHHHH---H-h-------cC-CH-HHHHHHHHHhhhcCCCCCcHH--HHHHH---HHHHHhc
Q 009977 154 HKIHPITREKPSLKAISTCLNLL---I-E-------SN-QV-DLAQNFLKYSNQHLRLKPNTC--IFNIL---IKHHCKR 215 (521)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~ll~~~---~-~-------~~-~~-~~a~~~~~~~~~~~~~~~~~~--~~~~l---~~~~~~~ 215 (521)
.+-....+..| ..|....+.- . + .| +. ++-.++-+.-.+.....++.. -++.- .......
T Consensus 164 lrgLR~npdsp--~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~ 241 (568)
T KOG2396|consen 164 LRGLRFNPDSP--KLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKF 241 (568)
T ss_pred HHHhhcCCCCh--HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHH
Confidence 88764333333 2332222111 0 0 00 00 000111110000000111110 00000 0000000
Q ss_pred CChHH-HHHHHHHHHhCCCCCCCHHHHHHHHH----HHHh---------------cCChHHHHHHHHHHHhcCCCCCCHH
Q 009977 216 GTLES-AFEVLKEMKKSQMSYPNLITYSTLID----GLCK---------------NGRFREAIELFEEMVSKDQILPDAL 275 (521)
Q Consensus 216 g~~~~-A~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---------------~g~~~~A~~~~~~~~~~~~~~~~~~ 275 (521)
....+ -..+.+.+...++ .++.+|..+.. .+.+ .-+-+....+|++.... .|+..
T Consensus 242 d~~kel~k~i~d~~~~~~~--~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~---l~t~s 316 (568)
T KOG2396|consen 242 DFLKELQKNIIDDLQSKAP--DNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT---LPTES 316 (568)
T ss_pred HHHHHHHHHHHHHHhccCC--CCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH---hhHHH
Confidence 11111 1123333444344 34444433321 1111 11223345677776543 45666
Q ss_pred HHHHHHHHHHhCC------CHHHHHHHHHHHHHcC-C-CCCcchHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCCHHH
Q 009977 276 TYNVLIDGFCRGG------KVDRAKKIMEFMKNNG-C-NPNVFNYTTLMNGFCKEGKLQE-AKEVFDEMKNFLLKPDTIG 346 (521)
Q Consensus 276 ~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~~~~~~~ 346 (521)
.|+..|..|...- .+.....+++...+.+ . +.....|..+...+...+...+ |+.+..+. ...+...
T Consensus 317 m~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~----f~~s~k~ 392 (568)
T KOG2396|consen 317 MWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTEL----FRDSGKM 392 (568)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHH----hcchHHH
Confidence 6777776665432 3344455555554432 1 2234455555555555554333 33333232 3345666
Q ss_pred HHHHHHHHHhc-CCHHHH-HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC-HHH-HH-HHHHHHHHCCCccCHHHH-HHH
Q 009977 347 YTTLINCFCRA-GRVDEA-LELLKEMKERGCKADIVTFNIILGGLCREGK-IEE-AL-GMLEKLWYDGIYLNKASY-RIV 420 (521)
Q Consensus 347 ~~~l~~~~~~~-~~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~-a~-~~~~~~~~~~~~~~~~~~-~~l 420 (521)
|..-+....+. .+++-- ..++......-..+....|+... .|+ ... .+ .++..+... ..|+..++ +.+
T Consensus 393 ~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~-~~~~~~tl~s~~ 466 (568)
T KOG2396|consen 393 WQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSV-IGADSVTLKSKY 466 (568)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHh-cCCceeehhHHH
Confidence 65555544422 122211 11222222221222233333333 122 111 11 122222222 23344443 467
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHc
Q 009977 421 LNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLC---KAGMAEDAAIALFGLV-EMGFKPESDSWALLVELICR 496 (521)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 496 (521)
+..+.+.|-..+|...+..+... .+|+...|..++..-. .+| ...+..+|+.+. ..| -|+..|...+..-..
T Consensus 467 l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~ 542 (568)
T KOG2396|consen 467 LDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSDLWMDYMKEELP 542 (568)
T ss_pred HHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChHHHHHHHHhhcc
Confidence 77888899999999999999854 3447777777775432 233 777888999887 566 677788877776678
Q ss_pred cCcHHHHHHHHHHHHH
Q 009977 497 GRKLLFAFELLDELVI 512 (521)
Q Consensus 497 ~g~~~~A~~~~~~m~~ 512 (521)
.|..+.+-.++.++++
T Consensus 543 ~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 543 LGRPENCGQIYWRAMK 558 (568)
T ss_pred CCCcccccHHHHHHHH
Confidence 8988888887777665
No 327
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.00 E-value=3.2 Score=37.19 Aligned_cols=49 Identities=14% Similarity=0.030 Sum_probs=21.9
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCC-cHHHHHHHHHHHHhcCChHHHHHHH
Q 009977 174 NLLIESNQVDLAQNFLKYSNQHLRLKP-NTCIFNILIKHHCKRGTLESAFEVL 225 (521)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 225 (521)
.-|.+.|.+++|++.|...+. +.| +++++..-..+|.+...+..|..=.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhH
Confidence 344444555555555544332 222 4444444444455444444444333
No 328
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=88.95 E-value=36 Score=36.49 Aligned_cols=131 Identities=24% Similarity=0.220 Sum_probs=73.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHhH----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc
Q 009977 351 INCFCRAGRVDEALELLKEMKERGCKADIVT----FNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ 426 (521)
Q Consensus 351 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (521)
+..--+.|-+.+|+.++. |+... |.+....+...+.+++|.-.|+..-+. .-.+.+|..
T Consensus 915 ~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~ 977 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKE 977 (1265)
T ss_pred HHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHH
Confidence 333345555566555543 34444 444444455567777777766654321 234567778
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 009977 427 KGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFEL 506 (521)
Q Consensus 427 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 506 (521)
+|++.+|+.+..++... -.--..+-..|..-+...+++-+|.++...... .|. ..+..|++...|++|.++
T Consensus 978 ~~dWr~~l~~a~ql~~~-~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d~~-----~av~ll~ka~~~~eAlrv 1048 (1265)
T KOG1920|consen 978 CGDWREALSLAAQLSEG-KDELVILAEELVSRLVEQRKHYEAAKILLEYLS---DPE-----EAVALLCKAKEWEEALRV 1048 (1265)
T ss_pred hccHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc---CHH-----HHHHHHhhHhHHHHHHHH
Confidence 88888888888776421 111111124577777888888888887765543 122 223344555555665554
Q ss_pred H
Q 009977 507 L 507 (521)
Q Consensus 507 ~ 507 (521)
.
T Consensus 1049 a 1049 (1265)
T KOG1920|consen 1049 A 1049 (1265)
T ss_pred H
Confidence 3
No 329
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.94 E-value=0.46 Score=28.25 Aligned_cols=24 Identities=29% Similarity=0.202 Sum_probs=12.9
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHc
Q 009977 490 LVELICRGRKLLFAFELLDELVIK 513 (521)
Q Consensus 490 l~~~~~~~g~~~~A~~~~~~m~~~ 513 (521)
|+.+|...|+.+.|.+++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555555555555555555543
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.68 E-value=1.3 Score=25.74 Aligned_cols=26 Identities=35% Similarity=0.635 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 009977 240 TYSTLIDGLCKNGRFREAIELFEEMV 265 (521)
Q Consensus 240 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 265 (521)
+++.+...|...|++++|+.++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555556666666666666655554
No 331
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.68 E-value=11 Score=30.37 Aligned_cols=29 Identities=10% Similarity=0.197 Sum_probs=12.8
Q ss_pred HHHHHcCCCCCcchHHHHHHHHHhcCCHH
Q 009977 298 EFMKNNGCNPNVFNYTTLMNGFCKEGKLQ 326 (521)
Q Consensus 298 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 326 (521)
+.+.+.+++++...+..+++.+.+.|++.
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33334444444444444444444444433
No 332
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.40 E-value=32 Score=35.19 Aligned_cols=117 Identities=10% Similarity=-0.004 Sum_probs=73.0
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCc--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHH
Q 009977 357 AGRVDEALELLKEMKERG-CKAD--IVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKA 433 (521)
Q Consensus 357 ~~~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 433 (521)
..+.+.|..++....... ..+. ...+..+....+..+...++...+....... .+......-+......++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 456788999998875443 2211 1233444444444433557777776654332 2444445555555588999988
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 434 IELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLV 476 (521)
Q Consensus 434 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 476 (521)
...+..|-.. ..-...-..-+.+++...|+.++|...|+++.
T Consensus 332 ~~~i~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8888887543 22344555567888788899999999998874
No 333
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.39 E-value=5.3 Score=28.47 Aligned_cols=44 Identities=11% Similarity=-0.046 Sum_probs=21.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 433 AIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLV 476 (521)
Q Consensus 433 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 476 (521)
+.+-++.+....+.|++.+..+.+++|.+..++..|.++++-..
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444444445555555555555555555555555554443
No 334
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.32 E-value=32 Score=35.15 Aligned_cols=315 Identities=11% Similarity=0.015 Sum_probs=140.1
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHH
Q 009977 70 KCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERV 149 (521)
Q Consensus 70 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 149 (521)
.+.|++..+.++-..+ ....+ ..-..|..+...+. ...+++....+++-. +.|............+.+.+++...
T Consensus 44 ~~~g~~~~~~~~~~~l-~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~La~~~~w~~~ 118 (644)
T PRK11619 44 WDNRQMDVVEQLMPTL-KDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANP--TLPPARSLQSRFVNELARREDWRGL 118 (644)
T ss_pred HHCCCHHHHHHHHHhc-cCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCC--CCchHHHHHHHHHHHHHHccCHHHH
Confidence 4567777777766655 22211 11122333322211 223444444444432 2233333444455556667777777
Q ss_pred HHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHH--HHHHH
Q 009977 150 LEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAF--EVLKE 227 (521)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~--~~~~~ 227 (521)
++.+.. .+.+...-.....+....|+.++|....+.+=... ...+..++.++..+.+.|.+.... +=++.
T Consensus 119 ~~~~~~------~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g--~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~ 190 (644)
T PRK11619 119 LAFSPE------KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG--KSLPNACDKLFSVWQQSGKQDPLAYLERIRL 190 (644)
T ss_pred HHhcCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCCChHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 662211 13344444556667777788776665555442221 223446677777777666654332 22222
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--------CCCCCCHHHHHHHHHHHH--hCCCHHHHHHHH
Q 009977 228 MKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK--------DQILPDALTYNVLIDGFC--RGGKVDRAKKIM 297 (521)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~ 297 (521)
+...+ +...-..+...+ ..+.....+.+..+... ..++++...-..++.++. ...+.+.|..++
T Consensus 191 al~~~----~~~lA~~l~~~l--~~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~ 264 (644)
T PRK11619 191 AMKAG----NTGLVTYLAKQL--PADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMI 264 (644)
T ss_pred HHHCC----CHHHHHHHHHhc--ChhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHH
Confidence 23222 222222222222 11111111112111111 011222211121222221 234556677777
Q ss_pred HHHHHcC-CCCCc--chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009977 298 EFMKNNG-CNPNV--FNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERG 374 (521)
Q Consensus 298 ~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 374 (521)
....... ..+.. .+...++......+...+|...++...... .+......-+..-...++++.+...+..|....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~ 342 (644)
T PRK11619 265 PSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA 342 (644)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh
Confidence 6654432 11111 112223222222222445555555443221 233333333444446777777777777765432
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 375 CKADIVTFNIILGGLCREGKIEEALGMLEKLW 406 (521)
Q Consensus 375 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 406 (521)
- -...-.--+..++...|+.++|..+|+.+.
T Consensus 343 ~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 343 K-EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred c-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2 133444556666666788888887777764
No 335
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.31 E-value=12 Score=33.31 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 325 LQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEM 370 (521)
Q Consensus 325 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 370 (521)
.++++.++..-.+.|+-||..+++.++..+.+.+++.+|..+.-.|
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3344444444444455555555555555555555555544444433
No 336
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.28 E-value=0.78 Score=28.64 Aligned_cols=34 Identities=24% Similarity=0.181 Sum_probs=20.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009977 454 ELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWAL 489 (521)
Q Consensus 454 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 489 (521)
.+.-++.+.|++++|.+..+.+++. +|+..-...
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHH
Confidence 4555677777777777777777765 566544333
No 337
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.26 E-value=3.4 Score=33.50 Aligned_cols=46 Identities=15% Similarity=0.031 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHH---HHHHHHhcCCHHHHHHHHHHHH
Q 009977 360 VDEALELLKEMKERGCKADIVTFNI---ILGGLCREGKIEEALGMLEKLW 406 (521)
Q Consensus 360 ~~~A~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~ 406 (521)
++.|.+..+.....++. |...++. .+.-+++.....++.+++++..
T Consensus 7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAi 55 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAI 55 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 34455555544443322 3333332 2222333344445555555443
No 338
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.14 E-value=5.6 Score=33.02 Aligned_cols=20 Identities=15% Similarity=-0.090 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHHHhcCCHHH
Q 009977 448 HYATSNELLVRLCKAGMAED 467 (521)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~ 467 (521)
|+..+.+|+..+.+.|+++.
T Consensus 177 n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CHHHHHHHHHHHHHhcchhh
Confidence 33334444444444444333
No 339
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=87.97 E-value=18 Score=31.81 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=15.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 009977 206 NILIKHHCKRGTLESAFEVLKEM 228 (521)
Q Consensus 206 ~~l~~~~~~~g~~~~A~~~~~~~ 228 (521)
..++..+.+.|++.+|+.+...+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHH
Confidence 45667777777777777655543
No 340
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.78 E-value=2.5 Score=30.02 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCc
Q 009977 464 MAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKES 515 (521)
Q Consensus 464 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 515 (521)
+.-+..+-++.+...++-|++....+.+++|.|.+++.-|.++|+-+..+-+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~ 73 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG 73 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence 4456778888888888999999999999999999999999999998886654
No 341
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.77 E-value=18 Score=31.52 Aligned_cols=123 Identities=11% Similarity=0.085 Sum_probs=67.5
Q ss_pred CcHHHHHHHHHhhccccCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHhhhc--CCCC--CcHHHHHHHHHHHHhcCC
Q 009977 144 SLHERVLEMFHKIHPITREKPSL--KAISTCLNLLIESNQVDLAQNFLKYSNQH--LRLK--PNTCIFNILIKHHCKRGT 217 (521)
Q Consensus 144 g~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~~l~~~~~~~g~ 217 (521)
.++++|+.-|.++.++.+.+.++ .++..++....+.+++++....+++++.- ..+. -+..+.|.++..-....+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 47888888888887766554443 45666788888888888888777776420 0111 123345555555555555
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 218 LESAFEVLKEMKKSQMSYPNLITY----STLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 218 ~~~A~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
.+--..+++.-.+.-....+...| +.+...|...|++.+..++++++..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 555444444332211111232223 3455555555555555555555543
No 342
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=87.74 E-value=35 Score=34.95 Aligned_cols=397 Identities=12% Similarity=0.043 Sum_probs=190.9
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHH---HHccCcHHHHHHHHHhhccccCCCCCHhHH
Q 009977 93 HNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKH---FSNCSLHERVLEMFHKIHPITREKPSLKAI 169 (521)
Q Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 169 (521)
-+...+..||..+.+.|++++...--..|.+.- +..+..|..-+.- ....+...++..+|++... +.-+...|
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~---dy~~v~iw 186 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG---DYNSVPIW 186 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc---ccccchHH
Confidence 355667788889999999988887777777653 5566666654443 2344778888888888753 23333344
Q ss_pred HHHHHHH-------HhcCCHHHHHHHHHHhhhcCCCCCc-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC
Q 009977 170 STCLNLL-------IESNQVDLAQNFLKYSNQHLRLKPN-----TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN 237 (521)
Q Consensus 170 ~~ll~~~-------~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 237 (521)
..++.-+ ...++++....+|++++...|..-+ ...|.-+=..|...-..++...+|..-...+.. .+
T Consensus 187 ~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D-~~ 265 (881)
T KOG0128|consen 187 EEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLD-ED 265 (881)
T ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccch-hh
Confidence 4333322 3346777888888888766554433 122222223344444446666666665554421 22
Q ss_pred HHHH--HHHHHH---HHhcCChHHHHH-------HHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 009977 238 LITY--STLIDG---LCKNGRFREAIE-------LFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGC 305 (521)
Q Consensus 238 ~~~~--~~l~~~---~~~~g~~~~A~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 305 (521)
...| ...-.. .....+++.|.+ .+++.... .++-...|..+++.+...|++.....+++++...-
T Consensus 266 ~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~--~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~- 342 (881)
T KOG0128|consen 266 TRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK--EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEM- 342 (881)
T ss_pred hhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhc-
Confidence 1111 111100 011222333332 23333222 23344567777777888888877777777776542
Q ss_pred CCCcchHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCC-------
Q 009977 306 NPNVFNYTTLMNGFC--KEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDE-ALELLKEMKERGC------- 375 (521)
Q Consensus 306 ~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~------- 375 (521)
..+...|..-. .|. ..+-.+.+..++....+. +.-...+|.--+-++.+.+.... -...|......++
T Consensus 343 ~~~~~~wi~y~-~~~d~eLkv~~~~~~~~~ra~R~-cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~ 420 (881)
T KOG0128|consen 343 VLDRALWIGYG-VYLDTELKVPQRGVSVHPRAVRS-CPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYL 420 (881)
T ss_pred cccHHHHhhhh-hhcccccccccccccccchhhcC-CchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 22222221100 000 011111122222222211 11112223222223333222111 1111222111111
Q ss_pred --------CCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHCCCC
Q 009977 376 --------KADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFS-CQKGELEKAIELLRLMLCRGFL 446 (521)
Q Consensus 376 --------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~ 446 (521)
..+...|..+-. .+..|...|.........+...+........ .-.++.+.+..+|+.....|..
T Consensus 421 ~~rr~~~~~~~s~~~s~lr~------~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~ 494 (881)
T KOG0128|consen 421 AYRRRCTNIIDSQDYSSLRA------AFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG 494 (881)
T ss_pred HHHHhhcccchhhhHHHHHH------HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc
Confidence 111111211111 2344555554443332222222222233322 3468899999999988855432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCcHHHHHH
Q 009977 447 PHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES--DSWALLVELICRGRKLLFAFE 505 (521)
Q Consensus 447 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~ 505 (521)
--...|...++.-...|+...+..+++.+......|+. .++..+...-...|.++.+..
T Consensus 495 ~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~ 555 (881)
T KOG0128|consen 495 SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDL 555 (881)
T ss_pred hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhh
Confidence 22225555666666778888888888887766555542 344444444445666665443
No 343
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.70 E-value=26 Score=33.34 Aligned_cols=91 Identities=4% Similarity=0.004 Sum_probs=52.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009977 173 LNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG 252 (521)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 252 (521)
.......|+++.+.+.+..... -+.....+...+++...+.|++++|...-.-|....+. +...........-..|
T Consensus 330 ~~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie--~~ei~~iaa~sa~~l~ 405 (831)
T PRK15180 330 SVIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE--DEEVLTVAAGSADALQ 405 (831)
T ss_pred HHHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC--ChhheeeecccHHHHh
Confidence 3445566777777766665532 12233446666677777777777777777777665553 3333333233333455
Q ss_pred ChHHHHHHHHHHHhc
Q 009977 253 RFREAIELFEEMVSK 267 (521)
Q Consensus 253 ~~~~A~~~~~~~~~~ 267 (521)
-++++...|+++...
T Consensus 406 ~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 406 LFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHHHHhcc
Confidence 666777777666543
No 344
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.70 E-value=11 Score=33.63 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=55.5
Q ss_pred CcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHH
Q 009977 127 KFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITR--EKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCI 204 (521)
Q Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 204 (521)
+....+...++..-....+.++++..+-++..... ..++. +...+++.+. .-+.++++.++..=+ .+|+-||-.+
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npI-qYGiF~dqf~ 137 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPI-QYGIFPDQFT 137 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcc-hhccccchhh
Confidence 33333444455555555677777776666542100 01111 1112222222 234456665555443 3577777777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009977 205 FNILIKHHCKRGTLESAFEVLKEMKKSQ 232 (521)
Q Consensus 205 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 232 (521)
++.+++.+.+.+++.+|..+...|....
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7777777777777777777766665443
No 345
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.15 E-value=13 Score=31.02 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=9.6
Q ss_pred CcchHHHHHHHHHhcCCHHHH
Q 009977 308 NVFNYTTLMNGFCKEGKLQEA 328 (521)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~~A 328 (521)
|+..+..|+..|.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444444443
No 346
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=86.66 E-value=10 Score=33.19 Aligned_cols=88 Identities=13% Similarity=0.069 Sum_probs=49.7
Q ss_pred HHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHH--
Q 009977 136 LMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHC-- 213 (521)
Q Consensus 136 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 213 (521)
=|.+++..+++.+++...-+..+ ...+--+.+...+|-.|.+.++...+.++-...++..+.. +..-|..++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq-~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq-~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQ-VPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQ-SLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhc-CcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccC-CchhhHHHHHHHHHH
Confidence 45566677777777765544432 2334445566666777777777777666666555432211 1222544444443
Q ss_pred ---hcCChHHHHHHH
Q 009977 214 ---KRGTLESAFEVL 225 (521)
Q Consensus 214 ---~~g~~~~A~~~~ 225 (521)
=.|.+++|.++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 367777776665
No 347
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.58 E-value=10 Score=27.47 Aligned_cols=75 Identities=9% Similarity=0.081 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 009977 417 YRIVLNFSCQKGEL--EKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVE-MGFKPESDSWALLVEL 493 (521)
Q Consensus 417 ~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~ 493 (521)
|..--..|....+. =+..+-++.+....+.|++.+..+.+++|.+..++..|.++++-... .| +....|..+++-
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 33333344443433 36667777777778889999999999999999999999999988774 33 223367766654
No 348
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.28 E-value=42 Score=34.26 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=38.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCcchHHHHHHHHHh--
Q 009977 245 IDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG-CNPNVFNYTTLMNGFCK-- 321 (521)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-- 321 (521)
...+.-.|+++.|++++-+- .....|.+++...+..|.-.+-.+... ..+.... -.+...-+..|+..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~---~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN---EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHhh---ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34456688888888888762 123455665555554432222111111 2222111 01122456677777765
Q ss_pred -cCCHHHHHHHHHHHHh
Q 009977 322 -EGKLQEAKEVFDEMKN 337 (521)
Q Consensus 322 -~~~~~~A~~~~~~~~~ 337 (521)
..+..+|.+++--+..
T Consensus 339 ~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 339 EITDPREALQYLYLICL 355 (613)
T ss_dssp TTT-HHHHHHHHHGGGG
T ss_pred hccCHHHHHHHHHHHHH
Confidence 4567778887776654
No 349
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.07 E-value=43 Score=34.17 Aligned_cols=149 Identities=13% Similarity=0.156 Sum_probs=95.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCC---cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009977 173 LNLLIESNQVDLAQNFLKYSNQHLRLKP---NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLC 249 (521)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (521)
++-+.+.+.+++|+...+... |..| -...+..++..+...|++++|-...-.|.. .+..-|...+..+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~---~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g-----n~~~eWe~~V~~f~ 434 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI---GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG-----NNAAEWELWVFKFA 434 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc---CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc-----chHHHHHHHHHHhc
Confidence 456677889999998887653 4444 244778889999999999999998888875 56777877777777
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH------------------HHcCCCCCcch
Q 009977 250 KNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFM------------------KNNGCNPNVFN 311 (521)
Q Consensus 250 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------------------~~~~~~~~~~~ 311 (521)
..++......++ ..+....+...|..++..+.. .+...-.++.... .+. ..+...
T Consensus 435 e~~~l~~Ia~~l----Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L 507 (846)
T KOG2066|consen 435 ELDQLTDIAPYL----PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTAL 507 (846)
T ss_pred cccccchhhccC----CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhH
Confidence 777655433322 222223456677777777766 2222211111110 110 112233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 312 YTTLMNGFCKEGKLQEAKEVFDEMK 336 (521)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~~~ 336 (521)
...|+..|...+++..|..++-...
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhcc
Confidence 4457888888899999988887654
No 350
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.99 E-value=1.1 Score=22.92 Aligned_cols=21 Identities=19% Similarity=-0.053 Sum_probs=11.7
Q ss_pred HHHHHHHHccCcHHHHHHHHH
Q 009977 488 ALLVELICRGRKLLFAFELLD 508 (521)
Q Consensus 488 ~~l~~~~~~~g~~~~A~~~~~ 508 (521)
..+..++...|+.++|.++++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555555666666655554
No 351
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.66 E-value=1.9 Score=22.60 Aligned_cols=30 Identities=10% Similarity=-0.063 Sum_probs=17.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCc
Q 009977 486 SWALLVELICRGRKLLFAFELLDELVIKES 515 (521)
Q Consensus 486 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 515 (521)
.+..+...+...|++++|...+++.++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555666666666666666655443
No 352
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.35 E-value=36 Score=32.61 Aligned_cols=373 Identities=13% Similarity=0.045 Sum_probs=196.0
Q ss_pred ChHHHHHH-HHhcCChHHHHHHHHHhhhCCCCCCC-----HHHHHHHHHHHHhcC-CchHHHHHHHHhhhc--cCCc-CH
Q 009977 61 SHGAAISL-IKCEKEPQCALEIFNTVSEQKGFNHN-----NATYATILDKLARYK-KFEAVDAVLRQMTYE--TCKF-HE 130 (521)
Q Consensus 61 ~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--~~~~-~~ 130 (521)
++-.+... +...++.+.|..-++++.....--|+ -.+++.|...+.... .+..+..++++.++. ++|. +-
T Consensus 48 t~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsc 127 (629)
T KOG2300|consen 48 THLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSC 127 (629)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhH
Confidence 34445544 34567888888888776432211122 245667777777666 888999999988765 3221 12
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHH------HHHHHhcCCHH---HHHHHHHHhhhcCCCCCc
Q 009977 131 GIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTC------LNLLIESNQVD---LAQNFLKYSNQHLRLKPN 201 (521)
Q Consensus 131 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l------l~~~~~~~~~~---~a~~~~~~~~~~~~~~~~ 201 (521)
.....++..+.-..++..|.+++.--.. ...+-...|..+ ...+....+.. .+.....++.+ ...+|
T Consensus 128 kllfQLaql~~idkD~~sA~elLavga~--sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~--n~~sd 203 (629)
T KOG2300|consen 128 KLLFQLAQLHIIDKDFPSALELLAVGAE--SADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQ--NISSD 203 (629)
T ss_pred HHHHHHHHHHhhhccchhHHHHHhcccc--ccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHh--ccCCC
Confidence 2344677888888999999998653221 112222222222 22233334444 44444445544 34444
Q ss_pred HH--------HHHHHHHHHHhcCChHHHHHHHHHHHhC---CCC-----------CCCH--HHH-----------HHHHH
Q 009977 202 TC--------IFNILIKHHCKRGTLESAFEVLKEMKKS---QMS-----------YPNL--ITY-----------STLID 246 (521)
Q Consensus 202 ~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~-----------~~~~--~~~-----------~~l~~ 246 (521)
.. ..+.-+..|.-.|+...+...++++.+. +.. .|.. ..| .....
T Consensus 204 k~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~ 283 (629)
T KOG2300|consen 204 KTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVI 283 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHh
Confidence 32 1222344566688887777777765432 110 0111 111 11111
Q ss_pred HHHhcCChHHHHHHHHHHHh-------cCCCCCCHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCc----
Q 009977 247 GLCKNGRFREAIELFEEMVS-------KDQILPDAL-----TYNVLIDGFCRGGKVDRAKKIMEFMKNNGC-NPNV---- 309 (521)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~---- 309 (521)
.-...|-+++|.++-++++. .++..|-.. +...++-+-.-.|++.+|++-...|.+--. .|.+
T Consensus 284 hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr 363 (629)
T KOG2300|consen 284 HSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLR 363 (629)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHH
Confidence 11234555555555554433 221111111 112222222347899999998888876321 2221
Q ss_pred ----chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHH
Q 009977 310 ----FNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGY--TTLINCFCRAGRVDEALELLKEMKERGCKADIVTFN 383 (521)
Q Consensus 310 ----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 383 (521)
.....++..+...|.++.|+.-|....+..-..|...+ ..+...|.+.|+.+.-.++++.+--. +..++.
T Consensus 364 ~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~----nt~s~s 439 (629)
T KOG2300|consen 364 AHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPL----NTNSLS 439 (629)
T ss_pred HhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCC----CCCcch
Confidence 11223344455678999999999887764433443333 33555688888877766666554322 222211
Q ss_pred H--------HHH--HHHhcCCHHHHHHHHHHHHHCCC-----ccCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 009977 384 I--------ILG--GLCREGKIEEALGMLEKLWYDGI-----YLNKASYRIVLNFSCQKGELEKAIELLRLML 441 (521)
Q Consensus 384 ~--------l~~--~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (521)
. ++. -....+++.+|...+++-.+..- +........|...+...|+..++.+...-..
T Consensus 440 sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpam 512 (629)
T KOG2300|consen 440 SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAM 512 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHH
Confidence 1 111 12357899999998888766421 1112223334445566788888887776554
No 353
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.29 E-value=7.8 Score=32.53 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=26.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009977 209 IKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEE 263 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 263 (521)
+..+.+.+++++++...++-.+..| .|...-..++..++-.|+|++|..-++-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakP--tda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKP--TDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCC--ccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 3444445555555555555444444 3444444455555555555555544443
No 354
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.22 E-value=2.8 Score=22.88 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 240 TYSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 240 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
+|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555555566666666666655544
No 355
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.15 E-value=19 Score=34.25 Aligned_cols=126 Identities=15% Similarity=0.102 Sum_probs=84.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009977 173 LNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG 252 (521)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 252 (521)
|.-....|++-.|-+-+...++.....|+. ...........|+++.+...+......-. ....+...+++...+.|
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~--i~l~~~i~~~lg~ye~~~~~~s~~~~~~~--s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVL--IQLRSVIFSHLGYYEQAYQDISDVEKIIG--TTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHhhhHHHHHHHhhchhhhhc--CCchHHHHHHHhhhchh
Confidence 444445688777766555555543334443 33344556778999999988876654322 45567788889999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009977 253 RFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 253 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (521)
++++|...-+-|+... --+...........-..|-++++...|+++....
T Consensus 372 r~~~a~s~a~~~l~~e--ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 372 RWREALSTAEMMLSNE--IEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hHHHHHHHHHHHhccc--cCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999999998887643 2333433333334455678899999999887654
No 356
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=85.14 E-value=2.4 Score=40.92 Aligned_cols=93 Identities=17% Similarity=0.096 Sum_probs=73.3
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHH
Q 009977 424 SCQKGELEKAIELLRLMLCRGFLP--HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLL 501 (521)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 501 (521)
....|+...|...+..+.. ..| .......|.....+.|..-+|-.++.+.+... ...+-++..+..++....+.+
T Consensus 617 wr~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eeecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhH
Confidence 3457999999999988873 345 33344557788888888889999998888765 455567778889999999999
Q ss_pred HHHHHHHHHHHcCccCcc
Q 009977 502 FAFELLDELVIKESGTIQ 519 (521)
Q Consensus 502 ~A~~~~~~m~~~~~~~~~ 519 (521)
.|++.|++++++.+.+..
T Consensus 694 ~a~~~~~~a~~~~~~~~~ 711 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPE 711 (886)
T ss_pred HHHHHHHHHHhcCCCChh
Confidence 999999999999887653
No 357
>PRK10941 hypothetical protein; Provisional
Probab=84.80 E-value=19 Score=31.93 Aligned_cols=79 Identities=9% Similarity=-0.048 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
..+.+-.+|.+.++++.|+.+.+.+....| .+..-+.--+-.|.+.|.+..|..-++..++..+-.|+.......+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P--~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDP--EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 345566677888888888888888887776 466666667777888888888888888777765555555555444444
Q ss_pred H
Q 009977 284 F 284 (521)
Q Consensus 284 ~ 284 (521)
.
T Consensus 261 l 261 (269)
T PRK10941 261 I 261 (269)
T ss_pred H
Confidence 3
No 358
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=84.17 E-value=16 Score=31.22 Aligned_cols=28 Identities=18% Similarity=0.030 Sum_probs=15.8
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 489 LLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 489 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
.+++...+.|++++|.++|.+++.....
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 3445555566666666666666655443
No 359
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.65 E-value=2 Score=23.23 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=9.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 009977 209 IKHHCKRGTLESAFEVLKEMKK 230 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~ 230 (521)
+.++.+.|++++|.+.|+++.+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 360
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.55 E-value=32 Score=30.56 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=27.1
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 009977 75 PQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQ 120 (521)
Q Consensus 75 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 120 (521)
..+|+++|--+..+.|- ..+-..++..+-...+..+|...+..
T Consensus 149 s~KA~ELFayLv~hkgk---~v~~~~~ie~lwpe~D~kka~s~lhT 191 (361)
T COG3947 149 SRKALELFAYLVEHKGK---EVTSWEAIEALWPEKDEKKASSLLHT 191 (361)
T ss_pred hhHHHHHHHHHHHhcCC---cccHhHHHHHHccccchhhHHHHHHH
Confidence 46788998888766542 33334566666666666666665544
No 361
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.49 E-value=27 Score=29.83 Aligned_cols=88 Identities=11% Similarity=0.075 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHhhhcCCCCC-c---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHH------HHHHHH
Q 009977 180 NQVDLAQNFLKYSNQHLRLKP-N---TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYST------LIDGLC 249 (521)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~------l~~~~~ 249 (521)
.+++.|+..|++.-+=+.... + ...+......-...+++.+|+++|+++...... .+..-|.. -+-++.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~-n~LLKys~KdyflkAgLChl 206 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD-NNLLKYSAKDYFLKAGLCHL 206 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chHHHhHHHHHHHHHHHHhH
Confidence 455555555555432111111 1 123344455556678888888888887766543 23222321 111222
Q ss_pred hcCChHHHHHHHHHHHhcC
Q 009977 250 KNGRFREAIELFEEMVSKD 268 (521)
Q Consensus 250 ~~g~~~~A~~~~~~~~~~~ 268 (521)
-..+.-.+...+++..+.+
T Consensus 207 ~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 207 CKADEVNAQRALEKYQELD 225 (288)
T ss_pred hcccHHHHHHHHHHHHhcC
Confidence 3345445555555555443
No 362
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.99 E-value=26 Score=33.50 Aligned_cols=106 Identities=15% Similarity=0.019 Sum_probs=61.7
Q ss_pred HHHhCCCHHHHHHHHHHHHH---cCCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCC----
Q 009977 283 GFCRGGKVDRAKKIMEFMKN---NGCNPN-----VFNYTTLMNGFCKEGKLQEAKEVFDEMKN-------FLLKPD---- 343 (521)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~---~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~---- 343 (521)
.+.-.|++.+|.+++...-- .|...+ -..++.|.-.+.+.|.+..+..+|.+..+ .|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34556788888777654321 121111 12235666666777777776666665542 343332
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 009977 344 -------TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLC 390 (521)
Q Consensus 344 -------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (521)
..+|| ..-.|...|++-.|.+.|.+....- .-++..|..+..+|.
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~vf-h~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHVF-HRNPRLWLRLAECCI 380 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 12233 2334667788888888887776542 236778888887775
No 363
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.47 E-value=4.3 Score=27.67 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=20.9
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCcH-HHHHHHHHHHHhcCChHHHHH
Q 009977 178 ESNQVDLAQNFLKYSNQHLRLKPNT-CIFNILIKHHCKRGTLESAFE 223 (521)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 223 (521)
..++.++|+..++.+++...-+++- .++..++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555444432222221 244455555555555555443
No 364
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=81.71 E-value=40 Score=30.51 Aligned_cols=132 Identities=17% Similarity=0.244 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCH
Q 009977 290 VDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK--EG----KLQEAKEVFDEMKNFLLK---PDTIGYTTLINCFCRAGRV 360 (521)
Q Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 360 (521)
+++...+++.+.+.|+.-+..+|.+....... .. ....|..+|+.|++...- ++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556777888888877776555443332222 22 245688888888875422 334444444433 33333
Q ss_pred ----HHHHHHHHHHHHcCCCCcHh--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 009977 361 ----DEALELLKEMKERGCKADIV--TFNIILGGLCREGK--IEEALGMLEKLWYDGIYLNKASYRIVLNF 423 (521)
Q Consensus 361 ----~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (521)
+.+..+|+.+.+.|...+.. ....++..+..... ...+..+++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 45566777777766554322 22222222221111 44677888888888888777777665543
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.40 E-value=6.1 Score=26.97 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=25.4
Q ss_pred cCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 009977 426 QKGELEKAIELLRLMLCRGFLP--HYATSNELLVRLCKAGMAEDAAIA 471 (521)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~ 471 (521)
...+.++|+..|+.+++.-..| -..++..++.+++..|++++++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666542222 223445556666666666665554
No 366
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=81.12 E-value=25 Score=34.41 Aligned_cols=88 Identities=14% Similarity=0.087 Sum_probs=43.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHH
Q 009977 213 CKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDR 292 (521)
Q Consensus 213 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 292 (521)
.-.|+...|...+.......+. ..-.....|...+.+.|-..+|-.++.+.+... ...+.++..+.+++....+.++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~-~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPL-QQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--SSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHhccChh-hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--ccCchHHHhcchhHHHHhhhHH
Confidence 3355555565555554443332 122223334444445555555555555554432 2333455555555555666666
Q ss_pred HHHHHHHHHHc
Q 009977 293 AKKIMEFMKNN 303 (521)
Q Consensus 293 a~~~~~~~~~~ 303 (521)
|++.|+++.+.
T Consensus 695 a~~~~~~a~~~ 705 (886)
T KOG4507|consen 695 ALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHHhc
Confidence 66666555554
No 367
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.57 E-value=5.8 Score=23.60 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=7.9
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 009977 387 GGLCREGKIEEALGMLEKLW 406 (521)
Q Consensus 387 ~~~~~~g~~~~a~~~~~~~~ 406 (521)
.+|...|+.+.|.++++++.
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 33333444444444443333
No 368
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=80.37 E-value=52 Score=30.89 Aligned_cols=96 Identities=20% Similarity=0.235 Sum_probs=47.2
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcH
Q 009977 426 QKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGM-----AEDAAIALFGLVEMGFKPESDSWALLVELICRGRKL 500 (521)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 500 (521)
+-.+.+.|+.++.+|++.|-+|....-..++-+...-|. ..-|...++.....|.+-....+...+-.++-.-+-
T Consensus 261 RGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da~~~lG~PE~~i~LAqavvyLA~aPKS 340 (436)
T COG2256 261 RGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNALQVAVAALDAVERLGSPEARIALAQAVVYLALAPKS 340 (436)
T ss_pred ccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCcc
Confidence 345677777777777777666655554444445444443 223444444445556332223333333333444444
Q ss_pred HHHHHHHHHHHH--cCccCccCC
Q 009977 501 LFAFELLDELVI--KESGTIQVP 521 (521)
Q Consensus 501 ~~A~~~~~~m~~--~~~~~~~v~ 521 (521)
..+...|+.++. +..++..||
T Consensus 341 NavY~A~~~A~~d~~~~~~~~vP 363 (436)
T COG2256 341 NAVYTAINAALADAKEGGSLEVP 363 (436)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCC
Confidence 445555554443 233444444
No 369
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.84 E-value=21 Score=25.95 Aligned_cols=78 Identities=10% Similarity=-0.040 Sum_probs=49.8
Q ss_pred HhHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009977 379 IVTFNIILGGLCREG--KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELL 456 (521)
Q Consensus 379 ~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 456 (521)
...|..--..|.... +.-+..+-++.+...++-|++....+.+.+|.+.+++..|.++++-+..+ ..+....|..++
T Consensus 8 ~eeF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~l 86 (108)
T PF02284_consen 8 DEEFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHH
T ss_pred HHHHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHH
Confidence 334454445555544 33466677777777788899999999999999999999999999888753 233333666665
Q ss_pred H
Q 009977 457 V 457 (521)
Q Consensus 457 ~ 457 (521)
.
T Consensus 87 q 87 (108)
T PF02284_consen 87 Q 87 (108)
T ss_dssp H
T ss_pred H
Confidence 4
No 370
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=79.79 E-value=35 Score=30.09 Aligned_cols=57 Identities=7% Similarity=-0.084 Sum_probs=22.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 209 IKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
|+++...|+|.+++...-+--..-. .-.......-|-.|.+.|++..+.++-..++.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pE-klPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPE-KLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcc-cCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4455555555554443333222111 11222333333344444444444444444443
No 371
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.46 E-value=29 Score=27.37 Aligned_cols=50 Identities=16% Similarity=0.130 Sum_probs=24.5
Q ss_pred ccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 009977 142 NCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSN 193 (521)
Q Consensus 142 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 193 (521)
..++++++..++..+.-+.+..+...++...+ +...|++.+|.++|+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELL 71 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhh
Confidence 35555566555555543333333333333332 344555555555555553
No 372
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=79.32 E-value=78 Score=32.34 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=20.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 009977 208 LIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKN 251 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 251 (521)
++..|.++|++++|.++..+...... .....+...+..+...
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~~~--~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQFQ--KIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGGS---TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhhc--chhHHHHHHHHHHHhC
Confidence 34556667777777666644333221 2233444455555443
No 373
>PRK10941 hypothetical protein; Provisional
Probab=79.20 E-value=22 Score=31.60 Aligned_cols=75 Identities=11% Similarity=-0.028 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHH
Q 009977 100 TILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNL 175 (521)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (521)
.+-.+|.+.++++.|.++.+.+.... |.++.-+..-.-.|.+.|.+..|..=++...+..+..|+.......+..
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 34445666677777777777776654 4445455555556666777777766666655444455555555444443
No 374
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=78.42 E-value=51 Score=29.73 Aligned_cols=47 Identities=15% Similarity=-0.026 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcC
Q 009977 254 FREAIELFEEMVSKDQILPDALTYNVLIDGFCR----GGKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 254 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 304 (521)
..+|.++|....+.+ .......|...|.. ..+..+|..+|+.+.+.|
T Consensus 93 ~~~A~~~~~~~a~~g----~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 93 KTKAADWYRCAAADG----LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG 143 (292)
T ss_pred HHHHHHHHHHHhhcc----cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC
Confidence 455555555443331 12223334443333 225556666666666655
No 375
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.51 E-value=96 Score=32.39 Aligned_cols=56 Identities=20% Similarity=0.159 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009977 429 ELEKAIELLRLMLCRGFLP--HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES 484 (521)
Q Consensus 429 ~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 484 (521)
..+.+.++-.-.....+.| ...+....+..+.+.+++..|..+-.++++.+..|..
T Consensus 1062 ~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~ 1119 (1202)
T KOG0292|consen 1062 NLEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPV 1119 (1202)
T ss_pred hHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChH
Confidence 3444444444444445555 3334455566777777777777777777766544443
No 376
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=76.93 E-value=57 Score=29.45 Aligned_cols=151 Identities=13% Similarity=-0.008 Sum_probs=78.5
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 009977 286 RGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK----EGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCR----A 357 (521)
Q Consensus 286 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 357 (521)
..+++..+...+......+ +......+...|.. ..+..+|.++|+...+.| .......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcc
Confidence 4567777777777776644 22344444444443 345677777777665543 23333445555544 3
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc----
Q 009977 358 GRVDEALELLKEMKERGCKADIVTFNIILGGLCREG-------KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ---- 426 (521)
Q Consensus 358 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 426 (521)
.+..+|...|+...+.|..+...+...+...|..-+ +...|...+.++...+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 367777777777777764322222333444443321 2225666666665554 23333333333322
Q ss_pred CCCHHHHHHHHHHHHHCCC
Q 009977 427 KGELEKAIELLRLMLCRGF 445 (521)
Q Consensus 427 ~g~~~~a~~~~~~~~~~~~ 445 (521)
..+.++|...|....+.|.
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC
Confidence 2356666666666665543
No 377
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=76.75 E-value=1.2e+02 Score=32.94 Aligned_cols=253 Identities=13% Similarity=0.031 Sum_probs=145.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHH
Q 009977 236 PNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTL 315 (521)
Q Consensus 236 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 315 (521)
++..+-...+..+.+.+. .++...+..+++. +|...-...+.++.+.+........+..++.. ++..+-...
T Consensus 633 ~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D----~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTP-PGFGPALVAALGD----GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 667777777777777765 4455666666542 24444445555554443221222333334432 455555556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 009977 316 MNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKI 395 (521)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 395 (521)
+..+...+..+ .. .+-...+ .+|...-...+.++.+.+..+. +..+.. .++...-...+.++...+..
T Consensus 705 ~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccc
Confidence 66665443211 12 2222332 3555555556666666554432 222222 23555556667777776654
Q ss_pred HH-HHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009977 396 EE-ALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFG 474 (521)
Q Consensus 396 ~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 474 (521)
+. +...+..+... ++...-...+.++...|..+.+...+..+++ +++..+-...+.++...+. +++...+..
T Consensus 773 ~~~~~~~L~~ll~D---~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 773 GAPAGDAVRALTGD---PDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred cchhHHHHHHHhcC---CCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 32 34445555442 4677777888888888876665555555552 4566666677788887775 456666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccCc
Q 009977 475 LVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESGTI 518 (521)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 518 (521)
+++ +|+...-...+.++.+.+....+...+..+++..+..+
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~V 886 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADV 886 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHH
Confidence 665 57777877888888886444678888888887665443
No 378
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=76.53 E-value=49 Score=28.51 Aligned_cols=84 Identities=11% Similarity=-0.031 Sum_probs=36.8
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhCCCH
Q 009977 212 HCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDA-LTYNVLIDGFCRGGKV 290 (521)
Q Consensus 212 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 290 (521)
|.....++.|...|.+....+| ....-|+.-+.++.+..+++.+..--.+.++. .|+. .....+.........+
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP--~~~~Y~tnralchlk~~~~~~v~~dcrralql---~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINP--TVASYYTNRALCHLKLKHWEPVEEDCRRALQL---DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCC--CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc---ChHHHHHHHHHHHHHHhhccc
Confidence 3334445555555555444432 12233444444555555555555444444432 2222 2222233333444455
Q ss_pred HHHHHHHHHH
Q 009977 291 DRAKKIMEFM 300 (521)
Q Consensus 291 ~~a~~~~~~~ 300 (521)
+.|+..+.+.
T Consensus 95 ~eaI~~Lqra 104 (284)
T KOG4642|consen 95 DEAIKVLQRA 104 (284)
T ss_pred cHHHHHHHHH
Confidence 5555555444
No 379
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=76.20 E-value=25 Score=24.99 Aligned_cols=31 Identities=10% Similarity=-0.024 Sum_probs=17.7
Q ss_pred CcCHHHHHHHHHHHHccCcHHHHHHHHHhhc
Q 009977 127 KFHEGIFLNLMKHFSNCSLHERVLEMFHKIH 157 (521)
Q Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 157 (521)
|.+......+...+...|++++|++.+-.+.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455566666666666666666666655554
No 380
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=75.73 E-value=18 Score=25.93 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=14.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 009977 244 LIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 244 l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
+...+...|++++|...+++.++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444555666666666666666543
No 381
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=75.63 E-value=67 Score=29.60 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=19.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCC
Q 009977 420 VLNFSCQKGELEKAIELLRLMLCRGF 445 (521)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (521)
+...+..+|..+.|..+++.+++.++
T Consensus 160 ~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 160 LCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 33445678999999999999887654
No 382
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=74.74 E-value=62 Score=28.85 Aligned_cols=61 Identities=5% Similarity=0.020 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 009977 271 LPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN-GCNPNVFNYTTLMNGFCKEGKLQEAKEV 331 (521)
Q Consensus 271 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 331 (521)
.++..+...++..++..+++.+-.++++..... +...|...|..+++.....|+..-...+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 334444445555555555555555555444432 2233444555555555555554443333
No 383
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.56 E-value=14 Score=30.86 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=17.3
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 198 LKPNTCIFNILIKHHCKRGTLESAFEVLKEMKK 230 (521)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 230 (521)
..|++.+|..++..+...|+.++|.++.+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555555555555555555444
No 384
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.47 E-value=63 Score=28.79 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHH
Q 009977 417 YRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLV-----EMGFKPESDSW 487 (521)
Q Consensus 417 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~ 487 (521)
+......|..+|.+.+|.++.++.+. +.| +...+-.++..+...|+--.+.+.++++. +.|+..+...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34445567777777777777777763 455 55566667777777777666666665543 25655554433
No 385
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.96 E-value=79 Score=29.67 Aligned_cols=66 Identities=11% Similarity=-0.058 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 238 LITYSTLIDGLCKNGRFREAIELFEEMVSKDQ-ILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
...+.-+...|...|+++.|++.|.+...-.. ....+..|..+|..-.-.|+|.....+..+..+.
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 45567788888888999999998888543210 1112344556666666778888888877777653
No 386
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=73.81 E-value=15 Score=26.33 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=12.4
Q ss_pred HHHHHHHccCcHHHHHHHHHhhc
Q 009977 135 NLMKHFSNCSLHERVLEMFHKIH 157 (521)
Q Consensus 135 ~l~~~~~~~g~~~~a~~~~~~~~ 157 (521)
.+...+...|++++|++.+++..
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 34444555566666666555543
No 387
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.50 E-value=90 Score=30.12 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=19.7
Q ss_pred ccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCH
Q 009977 142 NCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQV 182 (521)
Q Consensus 142 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 182 (521)
..+.++..++.+..+.. .+....+..++.....|.+.|..
T Consensus 29 ~~~~~d~cl~~l~~l~t-~~~~~~~v~~n~av~~~~kt~~t 68 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELET-RGESSGPVLHNRAVVSYYKTGCT 68 (696)
T ss_pred CCcchHHHHHHHHHHHh-ccccccceeeehhhHHHHhcccc
Confidence 34566666666655543 22233333345555555555544
No 388
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=73.22 E-value=30 Score=24.57 Aligned_cols=29 Identities=21% Similarity=0.165 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009977 203 CIFNILIKHHCKRGTLESAFEVLKEMKKS 231 (521)
Q Consensus 203 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 231 (521)
.....+...+...|++++|++.+-++.+.
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33444444444444444444444444433
No 389
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=73.04 E-value=1.3e+02 Score=31.56 Aligned_cols=183 Identities=10% Similarity=0.036 Sum_probs=92.7
Q ss_pred CHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CcHhHHHHHHHHHHhcC
Q 009977 324 KLQEAKEVFDEMKN--------FLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCK--ADIVTFNIILGGLCREG 393 (521)
Q Consensus 324 ~~~~A~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 393 (521)
+.++...+++.+.. .++..+......++... .|+..+++.+++.+...... .+... =
T Consensus 169 s~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~-----------I 235 (725)
T PRK13341 169 SDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLID-----------I 235 (725)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCcee-----------c
Confidence 34566666666543 23444555555555433 78888888888876532110 00000 0
Q ss_pred CHHHHHHHHHHHH---HCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----H
Q 009977 394 KIEEALGMLEKLW---YDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGM-----A 465 (521)
Q Consensus 394 ~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~ 465 (521)
..+.+.+.+.... ...-.+.......++.. .+.++++.|+.++.+|++.|.+|....-..++.+...-|. .
T Consensus 236 t~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al 314 (725)
T PRK13341 236 TLAIAEESIQQRAVLYDKEGDAHFDTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQAL 314 (725)
T ss_pred cHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHH
Confidence 1122233332211 11112344445555554 3568999999999999999988866554444444444453 2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH--cCccCccCC
Q 009977 466 EDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVI--KESGTIQVP 521 (521)
Q Consensus 466 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~--~~~~~~~v~ 521 (521)
.-|...+.-....|++--........-.++.+-+-..+ ..++++.+ +......||
T Consensus 315 ~~~~~~~~a~~~~g~pE~~~~laq~~~~la~apKSns~-~a~~~a~~~~~~~~~~~vP 371 (725)
T PRK13341 315 VVVEACAAAFERVGLPEGLYPLAQAALYLATAPKSNSV-LGFFDALKKVREEQVQDVP 371 (725)
T ss_pred HHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCCccHH-HHHHHHHHHHHhcCCCCCC
Confidence 23444444445567544344444444445544444444 33443333 122344555
No 390
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.74 E-value=14 Score=27.92 Aligned_cols=60 Identities=10% Similarity=0.055 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009977 432 KAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVE 492 (521)
Q Consensus 432 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 492 (521)
+..+.+.......+.|++.+..+.+++|.+..|+..|.++|+-.... ..+....|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 55566666666788899999999999999999999999999877643 1222335665554
No 391
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=72.57 E-value=69 Score=28.40 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=31.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCHH-------HHHHHHHHHHhCCCHHHHHHHH
Q 009977 244 LIDGLCKNGRFREAIELFEEMVSKDQILPDAL-------TYNVLIDGFCRGGKVDRAKKIM 297 (521)
Q Consensus 244 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~ 297 (521)
+.+-..+.+++++|+..|.+++.+ |+..|.. +...+...|...|++...-+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~k-g~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGK-GVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcC-CCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 455566677778888888777766 4544433 3344555666666655544443
No 392
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.42 E-value=62 Score=27.81 Aligned_cols=17 Identities=6% Similarity=0.352 Sum_probs=8.3
Q ss_pred hcCCHHHHHHHHHHHHh
Q 009977 321 KEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 321 ~~~~~~~A~~~~~~~~~ 337 (521)
..+++.+|+++|+++..
T Consensus 166 ~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555554443
No 393
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=71.45 E-value=44 Score=25.64 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009977 220 SAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEM 264 (521)
Q Consensus 220 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 264 (521)
.+.++|..|...++...-+..|......+...|++++|.++|+..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 888888888887776666777888888888888888888888753
No 394
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=70.93 E-value=66 Score=27.48 Aligned_cols=48 Identities=13% Similarity=-0.003 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHCCCCC----C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 431 EKAIELLRLMLCRGFLP----H-YATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 431 ~~a~~~~~~~~~~~~~p----~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
..|.+.|.+..+..-.| + ..+...+.....+.|+.++|.+.|.++...
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 35555555555432222 1 223333445566778888888888877764
No 395
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.83 E-value=16 Score=30.62 Aligned_cols=29 Identities=3% Similarity=-0.004 Sum_probs=15.4
Q ss_pred cCHHHHHHHHHHHHccCcHHHHHHHHHhh
Q 009977 128 FHEGIFLNLMKHFSNCSLHERVLEMFHKI 156 (521)
Q Consensus 128 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 156 (521)
|++..+..++..+...|+.++|.++..++
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555555555555555555555555544
No 396
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=69.51 E-value=1.3e+02 Score=30.40 Aligned_cols=26 Identities=8% Similarity=0.153 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHhh
Q 009977 131 GIFLNLMKHFSNCSLHERVLEMFHKI 156 (521)
Q Consensus 131 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 156 (521)
..|-..+..+.-.|.++.|.+++...
T Consensus 149 p~FW~~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWDYVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 45666788888888899888888544
No 397
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.23 E-value=1.6e+02 Score=31.26 Aligned_cols=116 Identities=15% Similarity=0.163 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHcCCCCCcchHH---
Q 009977 241 YSTLIDGLCKNGRFREAIELFEEMVSKDQ--ILPDALTYNVLIDGFCRGGKV--DRAKKIMEFMKNNGCNPNVFNYT--- 313 (521)
Q Consensus 241 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~--- 313 (521)
|..|+..|...|..++|+++|.+..+... ..--...+..++..+-+.+.. +-.+++-+...+........++.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 77888999999999999999998876321 000011223344444444433 44444444444332111111111
Q ss_pred ---------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 009977 314 ---------TLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCR 356 (521)
Q Consensus 314 ---------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 356 (521)
..+-.|......+-+..+++.+....-.++....+.++..|+.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1223345555666666777766654444455555666665543
No 398
>PF12002 MgsA_C: MgsA AAA+ ATPase C terminal; InterPro: IPR021886 The MgsA protein possesses DNA-dependent ATPase and ssDNA annealing activities []. MgsA contributes to the recovery of stalled replication forks and therefore prevents genomic instability caused by aberrant DNA replication []. Additionally, MgsA may play a role in chromosomal segregation []. This is consistent with a report that MgsA co-localises with the replisome and affects chromosome segregation []. This domain represents the C-terminal region of MgsA. ; PDB: 2R9G_A 2QW6_D 3CTD_B 3PVS_B 3BGE_A.
Probab=69.15 E-value=56 Score=26.49 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=7.4
Q ss_pred CHHHHHHHHHHHHHCCC
Q 009977 394 KIEEALGMLEKLWYDGI 410 (521)
Q Consensus 394 ~~~~a~~~~~~~~~~~~ 410 (521)
+.+.|+-++.+|++.|-
T Consensus 3 D~dAAlywlarml~~Ge 19 (168)
T PF12002_consen 3 DPDAALYWLARMLEGGE 19 (168)
T ss_dssp -HHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHHHHcCC
Confidence 34445555555555443
No 399
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=68.21 E-value=12 Score=24.26 Aligned_cols=24 Identities=21% Similarity=0.011 Sum_probs=12.4
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHH
Q 009977 489 LLVELICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 489 ~l~~~~~~~g~~~~A~~~~~~m~~ 512 (521)
.++.+|...|++++|.++++++.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445555555555555555555443
No 400
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=68.08 E-value=1.8e+02 Score=31.38 Aligned_cols=100 Identities=10% Similarity=0.030 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHH-------HHHHHHccC---cHHHHHHHHHhhccccCCCCCHh
Q 009977 98 YATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLN-------LMKHFSNCS---LHERVLEMFHKIHPITREKPSLK 167 (521)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~ 167 (521)
+.++-+++...+.+++|...|+++... +|-....+.. ++.-....| .+++|+..|+.+.. ...-+-
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 553 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRES-FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG---GVGAPL 553 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhc-CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC---CCCCch
Confidence 334445666666777777777776654 2222222222 222222223 46778888887753 122222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc
Q 009977 168 AISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPN 201 (521)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 201 (521)
-|..-.-+|-+.|++++-.+.+..+.+++...|.
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 3444445677788888888888777776666664
No 401
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=67.77 E-value=81 Score=27.27 Aligned_cols=84 Identities=14% Similarity=0.059 Sum_probs=36.4
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCcH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 009977 176 LIESNQVDLAQNFLKYSNQHLRLKPNT-CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRF 254 (521)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 254 (521)
|....+++.|...|.+.+ -+.|+. .-|..-+..+.+..+++.+..=-....+..+ ..+.....+.........+
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~--N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP--NLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh--HHHHHHHHHHHHHHhhccc
Confidence 333444555555444443 233433 2333444444555555555444444333222 1222333344444444555
Q ss_pred HHHHHHHHHH
Q 009977 255 REAIELFEEM 264 (521)
Q Consensus 255 ~~A~~~~~~~ 264 (521)
++|+..+.+.
T Consensus 95 ~eaI~~Lqra 104 (284)
T KOG4642|consen 95 DEAIKVLQRA 104 (284)
T ss_pred cHHHHHHHHH
Confidence 5555555544
No 402
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=66.70 E-value=43 Score=26.48 Aligned_cols=58 Identities=10% Similarity=0.156 Sum_probs=44.3
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCc
Q 009977 87 EQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSL 145 (521)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (521)
+..|++.+.. -..++..+...++.-.|.++++.+.+.+...+..|.+..++.+...|-
T Consensus 13 k~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 13 KEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 4556665544 346778888888889999999999998877778888888888877764
No 403
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=66.56 E-value=45 Score=33.69 Aligned_cols=59 Identities=15% Similarity=0.176 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 276 TYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMK 336 (521)
Q Consensus 276 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 336 (521)
....++..|.+.|-.+.|.++.+.+-..-. ...-|..-+..+.+.|+......+.+.+.
T Consensus 407 ~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 407 DAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555555555555554433211 11234444455555555555544444443
No 404
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.55 E-value=5.2 Score=36.02 Aligned_cols=93 Identities=19% Similarity=0.160 Sum_probs=52.4
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH
Q 009977 249 CKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEA 328 (521)
Q Consensus 249 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 328 (521)
...|.++.|++.|...+... ++....|..-..++.+.+++..|++=++..++.. +....-|-.-..+....|++++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHH
Confidence 34566666777666666542 4555555556666666666666666666665543 11222333333444456666666
Q ss_pred HHHHHHHHhCCCCCCH
Q 009977 329 KEVFDEMKNFLLKPDT 344 (521)
Q Consensus 329 ~~~~~~~~~~~~~~~~ 344 (521)
...|....+.+..+..
T Consensus 202 a~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 202 AHDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHHhccccHHH
Confidence 6666666665544433
No 405
>PRK13342 recombination factor protein RarA; Reviewed
Probab=66.55 E-value=1.3e+02 Score=29.04 Aligned_cols=21 Identities=29% Similarity=0.254 Sum_probs=11.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 009977 428 GELEKAIELLRLMLCRGFLPH 448 (521)
Q Consensus 428 g~~~~a~~~~~~~~~~~~~p~ 448 (521)
++.+.|+.++..|++.|.+|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 455555555555555554444
No 406
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=65.77 E-value=30 Score=21.61 Aligned_cols=29 Identities=24% Similarity=0.159 Sum_probs=15.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 009977 420 VLNFSCQKGELEKAIELLRLMLCRGFLPHYA 450 (521)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 450 (521)
+.-++.+.|++++|.+..+.+++ +.|+..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 33455666666666666666663 355443
No 407
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=64.22 E-value=53 Score=23.85 Aligned_cols=79 Identities=20% Similarity=0.185 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009977 394 KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALF 473 (521)
Q Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 473 (521)
..++|..+-+-+...+-. ...+-.+-+..+...|++++|..+.+.. ..||...|.+| +-.+.|..+....-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHH
Confidence 456666666555544311 2222222334456667777777665554 35666655433 3345666665555555
Q ss_pred HHHHCC
Q 009977 474 GLVEMG 479 (521)
Q Consensus 474 ~~~~~~ 479 (521)
++...|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 555544
No 408
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=63.61 E-value=70 Score=28.96 Aligned_cols=120 Identities=12% Similarity=0.085 Sum_probs=68.9
Q ss_pred cCCchHHHHHHHHhhhccCCcCHHHHH--HHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHH--HHHHHHHHhcCCHH
Q 009977 108 YKKFEAVDAVLRQMTYETCKFHEGIFL--NLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAI--STCLNLLIESNQVD 183 (521)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~ 183 (521)
.--..+|+++|++.++.+ ..+|. .-+..++..+ +| +. ....+..+| ..+.-+..+.|+..
T Consensus 229 a~Ti~~AE~l~k~ALka~----e~~yr~sqq~qh~~~~~---da------~~---rRDtnvl~YIKRRLAMCARklGrlr 292 (556)
T KOG3807|consen 229 ATTIVDAERLFKQALKAG----ETIYRQSQQCQHQSPQH---EA------QL---RRDTNVLVYIKRRLAMCARKLGRLR 292 (556)
T ss_pred hhhHHHHHHHHHHHHHHH----HHHHhhHHHHhhhccch---hh------hh---hcccchhhHHHHHHHHHHHHhhhHH
Confidence 345678899998887664 12222 1222222222 11 11 112233333 23444555789999
Q ss_pred HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHH
Q 009977 184 LAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYST 243 (521)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 243 (521)
+|.+.++.+.++..+..-......|+.++....-+..+..++.+.-+...+..-...|+.
T Consensus 293 EA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTa 352 (556)
T KOG3807|consen 293 EAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTA 352 (556)
T ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHH
Confidence 999999998775433223345677888888888888888777776655553233444543
No 409
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.58 E-value=1.5e+02 Score=28.77 Aligned_cols=156 Identities=13% Similarity=-0.057 Sum_probs=68.9
Q ss_pred hcCCHHHHHHHHHHHHHcC-CCCcH--------hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHH--HHHHHHH
Q 009977 356 RAGRVDEALELLKEMKERG-CKADI--------VTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASY--RIVLNFS 424 (521)
Q Consensus 356 ~~~~~~~A~~~~~~~~~~~-~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~ 424 (521)
-.|++.+|++-...|.+-. -.|.+ .....+...+...+.++.|...|....+..-..|...+ ..+...|
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY 414 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence 3577777777666665431 11221 11122223334456677777777666554222232222 2334456
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCC-CHHHH-HH--HHHH--HHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHH
Q 009977 425 CQKGELEKAIELLRLMLCRGFLP-HYATS-NE--LLVR--LCKAGMAEDAAIALFGLVEMGFKPES-----DSWALLVEL 493 (521)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~~~~p-~~~~~-~~--l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~ 493 (521)
.+.|+.+.-.++++.+-..+-.+ ..... +. ++.+ ....+++.||...+.+-++..-.-|. -....|...
T Consensus 415 L~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v 494 (629)
T KOG2300|consen 415 LRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHV 494 (629)
T ss_pred HHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH
Confidence 66666555555444432110000 00000 00 1111 23566777777777665542101111 111223344
Q ss_pred HHccCcHHHHHHHHHHHH
Q 009977 494 ICRGRKLLFAFELLDELV 511 (521)
Q Consensus 494 ~~~~g~~~~A~~~~~~m~ 511 (521)
+...|+..++.+...-.+
T Consensus 495 ~lslgn~~es~nmvrpam 512 (629)
T KOG2300|consen 495 FLSLGNTVESRNMVRPAM 512 (629)
T ss_pred HHHhcchHHHHhccchHH
Confidence 445666666665554443
No 410
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=63.09 E-value=1.3e+02 Score=28.52 Aligned_cols=57 Identities=19% Similarity=0.217 Sum_probs=39.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 009977 316 MNGFCKEGKLQEAKEVFDEMKNFLLKPDTI--GYTTLINCFC--RAGRVDEALELLKEMKER 373 (521)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~A~~~~~~~~~~ 373 (521)
+..+...+++..|.+++..+... +.++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44556888999999999998875 444433 4444555543 467788888888887664
No 411
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=62.74 E-value=59 Score=23.93 Aligned_cols=78 Identities=22% Similarity=0.201 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009977 394 KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALF 473 (521)
Q Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 473 (521)
..++|..+.+-+...+.. ...+-.+-+..+.+.|+|++|+. .-.. .-.||...|.+| +-.+.|..+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl---~~~~-~~~pdL~p~~AL--~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALL---LPQC-HCYPDLEPWAAL--CAWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHH---HHTT-S--GGGHHHHHH--HHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHH---hccc-CCCccHHHHHHH--HHHhhccHHHHHHHHH
Confidence 466666666666655331 22222233344556677766621 1111 234455444322 3346666666666665
Q ss_pred HHHHC
Q 009977 474 GLVEM 478 (521)
Q Consensus 474 ~~~~~ 478 (521)
++...
T Consensus 94 rla~~ 98 (116)
T PF09477_consen 94 RLASS 98 (116)
T ss_dssp HHCT-
T ss_pred HHHhC
Confidence 55443
No 412
>PRK12798 chemotaxis protein; Reviewed
Probab=62.56 E-value=1.4e+02 Score=28.27 Aligned_cols=192 Identities=14% Similarity=0.013 Sum_probs=103.9
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCH
Q 009977 286 RGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFC-KEGKLQEAKEVFDEMKNFLLKPDT----IGYTTLINCFCRAGRV 360 (521)
Q Consensus 286 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~ 360 (521)
-.|+..++.+.+..+.....++....+..|+.+-. ...+..+|+.+|+...- ..|.. ....--+....+.|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcH
Confidence 36788888888888776666777777777766543 45678888888887654 23442 2333344455677888
Q ss_pred HHHHHHHHHHHHcC-CCCcHhH-HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCccCHHHHHHHHHHHHcCCCHHHHHHHH
Q 009977 361 DEALELLKEMKERG-CKADIVT-FNIILGGLCREGKIEEALGMLEKLWYD-GIYLNKASYRIVLNFSCQKGELEKAIELL 437 (521)
Q Consensus 361 ~~A~~~~~~~~~~~-~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 437 (521)
+++..+-.+-...- ..|-..- +..+..++.+.++-..- ..+..+... ...--...|..+...-...|+.+-|.-.-
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 87766555444331 1122222 22333344444422222 223333332 22223456777777777788888888777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHCCCCC
Q 009977 438 RLMLCRGFLPHYATSNELLVRLC-----KAGMAEDAAIALFGLVEMGFKP 482 (521)
Q Consensus 438 ~~~~~~~~~p~~~~~~~l~~~~~-----~~g~~~~a~~~~~~~~~~~~~~ 482 (521)
++.....-..+. -...+..|. -..+++++.+.+.++-...+.+
T Consensus 281 ~~A~~L~~~~~~--~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~ 328 (421)
T PRK12798 281 ERALKLADPDSA--DAARARLYRGAALVASDDAESALEELSQIDRDKLSE 328 (421)
T ss_pred HHHHHhccCCCc--chHHHHHHHHHHccCcccHHHHHHHHhcCChhhCCh
Confidence 777754211111 111222221 2345666666666555443333
No 413
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=62.40 E-value=25 Score=23.12 Aligned_cols=52 Identities=19% Similarity=0.200 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 009977 446 LPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGR 498 (521)
Q Consensus 446 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 498 (521)
.|....++.++..+++..-.++++..+.++.+.| ..+..+|..-++.+++..
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence 3455566667777776666777777777777666 355666666666655543
No 414
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.85 E-value=36 Score=22.13 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=10.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 009977 384 IILGGLCREGKIEEALGMLEKLW 406 (521)
Q Consensus 384 ~l~~~~~~~g~~~~a~~~~~~~~ 406 (521)
.++.+|...|++++|.++++.+.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444555555555554444443
No 415
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=61.62 E-value=70 Score=24.38 Aligned_cols=60 Identities=10% Similarity=0.029 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009977 396 EEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELL 456 (521)
Q Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 456 (521)
-+..+-++.+...++-|++......+.+|.+.+++..|.++|+-+..+ ..+...+|-.++
T Consensus 66 wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 66 WEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 355666667777788899999999999999999999999999888743 333333444443
No 416
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=61.59 E-value=46 Score=29.26 Aligned_cols=62 Identities=10% Similarity=0.059 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKK----SQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMV 265 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 265 (521)
....++..|.+.|++++|.++|+.+.. .|-......+...+..++...|+.+..+.+.-++.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 445677888889999999988888742 33322445566777888888898888877766554
No 417
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=61.57 E-value=60 Score=23.58 Aligned_cols=50 Identities=20% Similarity=0.336 Sum_probs=20.5
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009977 248 LCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 248 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (521)
+...|+|++|..+.+.. ..||...|.++.. .+.|-.+++..-+.++..+|
T Consensus 49 LmNrG~Yq~Al~l~~~~-----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL-----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC-----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34444455444443332 1344444433322 23344444444444444443
No 418
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=61.34 E-value=1.2e+02 Score=28.65 Aligned_cols=60 Identities=10% Similarity=0.017 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhc-CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009977 169 ISTCLNLLIESNQVDLAQNFLKYSNQH-LRLKPNTCIFNILIKHHCKRGTLESAFEVLKEM 228 (521)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 228 (521)
+..+++...-.|+.+...+.++.+.+. .+-.|...+-.-++-+|.-.|++.+|.+.|-.+
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHH
Confidence 444556666666655555555544321 122232222233455555666666666666554
No 419
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=60.94 E-value=1.3e+02 Score=27.33 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 206 NILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 206 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
..|.-+..+.|+..+|.+.|+.+.+.-+-..-......++.++....-+.+...++.+..+.
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44566667899999999999998776432111234567899998888888888887776544
No 420
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=60.46 E-value=21 Score=31.85 Aligned_cols=38 Identities=26% Similarity=0.438 Sum_probs=22.6
Q ss_pred CCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 009977 270 ILPDALT-YNVLIDGFCRGGKVDRAKKIMEFMKNNGCNP 307 (521)
Q Consensus 270 ~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 307 (521)
+.||..+ |+..|....+.||+++|+++++++.+.|...
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 3344444 3466666666666666666666666666443
No 421
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=60.37 E-value=65 Score=30.57 Aligned_cols=99 Identities=17% Similarity=0.036 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHH-------HHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHH-----
Q 009977 413 NKASYRIVLNFSCQKGELEKAIELLRL-------MLCRGFLP-----HYATSNELLVRLCKAGMAEDAAIALFGL----- 475 (521)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~a~~~~~~-------~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~----- 475 (521)
+......++..+....++.+.++..+. .-+.|..| ...+...|++..+-.||+..|+++++.+
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Q ss_pred --HHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 009977 476 --VEMGFKPESDSWALLVELICRGRKLLFAFELLDELV 511 (521)
Q Consensus 476 --~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 511 (521)
...-..-...++..++-+|...+++.+|.+.|..++
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 422
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=60.31 E-value=1.7e+02 Score=28.47 Aligned_cols=399 Identities=13% Similarity=0.078 Sum_probs=203.7
Q ss_pred CCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHH
Q 009977 57 SRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNL 136 (521)
Q Consensus 57 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (521)
.++--|...+..+.+.+.+.+.-.+|..|+...+-.||...+.+. -.+....+++.|..+|...+..+ |.++..|...
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrgLR~n-pdsp~Lw~ey 180 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRGLRFN-PDSPKLWKEY 180 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHHhhcC-CCChHHHHHH
Confidence 366678888888888888999999999998877655555554322 22333445999999999988775 4555555544
Q ss_pred HHHHHc---------------cCcHHHHHHHHHhhccccCCCCCHhHHHHH-----HHHHHhcCCHHHHH-HHHHHhhhc
Q 009977 137 MKHFSN---------------CSLHERVLEMFHKIHPITREKPSLKAISTC-----LNLLIESNQVDLAQ-NFLKYSNQH 195 (521)
Q Consensus 137 ~~~~~~---------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-----l~~~~~~~~~~~a~-~~~~~~~~~ 195 (521)
++.-.. .++.++=++--+... ....++......- ....-......+-. .+.+.+..
T Consensus 181 frmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~--~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~- 257 (568)
T KOG2396|consen 181 FRMELMYAEKLRNRREELGLDSSDKDEEIERGELAW--INYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQS- 257 (568)
T ss_pred HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH--HhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhc-
Confidence 443211 011100000000000 0001111110000 00000001111111 11222211
Q ss_pred CCCCCcHHHHHHHHHH----HHh---------------cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC----
Q 009977 196 LRLKPNTCIFNILIKH----HCK---------------RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG---- 252 (521)
Q Consensus 196 ~~~~~~~~~~~~l~~~----~~~---------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 252 (521)
+.+.++.+|..+..- +.+ .-+.+....+|++.... .++...|+..|..|...-
T Consensus 258 -~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~---l~t~sm~e~YI~~~lE~~~~~r 333 (568)
T KOG2396|consen 258 -KAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT---LPTESMWECYITFCLERFTFLR 333 (568)
T ss_pred -cCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHhhh
Confidence 223333333333221 111 11223344666666543 155666766666665432
Q ss_pred --ChHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCCHH-HHHHHHHHHHHcCCCCCcchHHHHHHHHHhc-CCHHH
Q 009977 253 --RFREAIELFEEMVSKDQILPD-ALTYNVLIDGFCRGGKVD-RAKKIMEFMKNNGCNPNVFNYTTLMNGFCKE-GKLQE 327 (521)
Q Consensus 253 --~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 327 (521)
.....+.+|+......+..++ ...|..+...++..+... -|..+... ++..+...|..-+...... .+++-
T Consensus 334 ~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e----~f~~s~k~~~~kl~~~~~s~sD~q~ 409 (568)
T KOG2396|consen 334 GKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTE----LFRDSGKMWQLKLQVLIESKSDFQM 409 (568)
T ss_pred hhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHH----HhcchHHHHHHHHHHHHhhcchhHH
Confidence 345556666666655444433 445666666666555433 23333322 3344555555444444422 12221
Q ss_pred -HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHH--HHHHHHHHcCCCCcHhHH-HHHHHHHHhcCCHHHHHHHH
Q 009977 328 -AKEVFDEMKNFLLKPDTIGYTTLINCFCRAGR-VDEAL--ELLKEMKERGCKADIVTF-NIILGGLCREGKIEEALGML 402 (521)
Q Consensus 328 -A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~--~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~ 402 (521)
-.+.+......-..+-...|+... .|+ ..... .++...... ..|+..++ +.++..+.+.|-.++|...+
T Consensus 410 ~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y 483 (568)
T KOG2396|consen 410 LFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVY 483 (568)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHH
Confidence 122233333322223344444433 222 22211 123333333 23455555 56777888889999999999
Q ss_pred HHHHHCCCccCHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 403 EKLWYDGIYLNKASYRIVLNFSC--QKGELEKAIELLRLMLCR-GFLPHYATSNELLVRLCKAGMAEDAAIALFGLVE 477 (521)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 477 (521)
..+... ++|+...|..++..-. ..-+..-+..+|+.|... | .++..|...+..-...|..+.+-.++.++.+
T Consensus 484 ~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 484 KSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 999876 4567777887776422 122377888899988854 5 6777777777666678888877777766654
No 423
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.98 E-value=1.6e+02 Score=27.96 Aligned_cols=56 Identities=21% Similarity=0.160 Sum_probs=39.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHh--HHHHHHHHHHh--cCCHHHHHHHHHHHHHC
Q 009977 352 NCFCRAGRVDEALELLKEMKERGCKADIV--TFNIILGGLCR--EGKIEEALGMLEKLWYD 408 (521)
Q Consensus 352 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~g~~~~a~~~~~~~~~~ 408 (521)
..+.+.+++..|.++++.+... +.++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455889999999999999886 444443 44555555543 55788899998887764
No 424
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=59.54 E-value=1.6e+02 Score=27.70 Aligned_cols=50 Identities=14% Similarity=0.254 Sum_probs=28.2
Q ss_pred cCChHHHHHHHHHhhhCC----CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHh
Q 009977 72 EKEPQCALEIFNTVSEQK----GFNHNNATYATILDKLARYKKFEAVDAVLRQM 121 (521)
Q Consensus 72 ~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 121 (521)
+++.+.|++-+-...++. +...+......++..|...++|+..-..+..+
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~L 78 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLL 78 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 566666666554432221 22334455666777788888877655544444
No 425
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.33 E-value=18 Score=32.77 Aligned_cols=117 Identities=15% Similarity=0.025 Sum_probs=60.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHH
Q 009977 356 RAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIE 435 (521)
Q Consensus 356 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (521)
..|.++.|++.|-..++..+ +....|..-.+++.+.++...|++=+......+.. ....|-.-..+..-.|++++|.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHH
Confidence 45666666666666665542 24445555566666666666666666555544221 11223333333444566666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 436 LLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLV 476 (521)
Q Consensus 436 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 476 (521)
.++...+.++.+....+ +=...-+.+..++-...+++.+
T Consensus 204 dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 204 DLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHH
Confidence 66666665555533322 2223334444444444444443
No 426
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=59.11 E-value=1.2e+02 Score=26.38 Aligned_cols=59 Identities=8% Similarity=0.080 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Q 009977 314 TLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCR-AGRVDEALELLKEMKE 372 (521)
Q Consensus 314 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~ 372 (521)
.+++.+-+.|+++++...+.++...+...+..--+.+..+|-. .|....+.+++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 4566677777777777777777776555555555555555532 3444455555554443
No 427
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=58.73 E-value=1.3e+02 Score=26.65 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009977 235 YPNLITYSTLIDGLCKNGRFREAIELFE 262 (521)
Q Consensus 235 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 262 (521)
..++..+..++..|.+.|++.+|+..|-
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3567777788888888888888777663
No 428
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=58.29 E-value=1.4e+02 Score=26.78 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhcCCchHHHH
Q 009977 95 NATYATILDKLARYKKFEAVDA 116 (521)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~ 116 (521)
...+..+++.|...|+++..-.
T Consensus 52 ~kvl~~i~dLl~S~~~~~~Lne 73 (439)
T COG5071 52 TKVLIYIADLLFSAGDFQGLNE 73 (439)
T ss_pred HHHHHHHHHHHhhcCchhhhhh
Confidence 3445555666666666664333
No 429
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=57.14 E-value=94 Score=25.63 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHCCCccCH--HHH-----HHHHHHHHcCCCHHHHHHHHHHHH
Q 009977 395 IEEALGMLEKLWYDGIYLNK--ASY-----RIVLNFSCQKGELEKAIELLRLML 441 (521)
Q Consensus 395 ~~~a~~~~~~~~~~~~~~~~--~~~-----~~l~~~~~~~g~~~~a~~~~~~~~ 441 (521)
.+.|+.+|+.+.+....|.. ..- ...+..|.+.|.+++|.+++++..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHh
Confidence 56677777777665322211 111 122345667777777777777766
No 430
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=56.79 E-value=2.5e+02 Score=30.57 Aligned_cols=113 Identities=16% Similarity=0.195 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 009977 344 TIGYTTLINCFCRAG--RVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVL 421 (521)
Q Consensus 344 ~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 421 (521)
..-...++.+|++.+ ++++|+....++.+. +...-...+...+- +-.+-++|+.++.. - |.. ..++
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----~~~~ae~alkyl~f---LvDvn~Ly~~ALG~--Y-Dl~--Lal~ 879 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREE----DPESAEEALKYLCF---LVDVNKLYDVALGT--Y-DLE--LALM 879 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc----ChHHHHHHHhHhee---eccHHHHHHHHhhh--c-CHH--HHHH
Confidence 444567788888888 888999988888866 11211111111111 11222333333221 0 110 1122
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009977 422 NFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFG 474 (521)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 474 (521)
-|-..+.|++|=+-+++++.+ ++|+..-| -|+ ...++++.|++.+.+
T Consensus 880 VAq~SQkDPKEYLPfL~~L~~--l~~~~rry--~ID--~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 880 VAQQSQKDPKEYLPFLQELQK--LPPLYRRY--KID--DHLKRYEKALRHLSA 926 (928)
T ss_pred HHHHhccChHHHHHHHHHHHh--CChhheee--eHh--hhhCCHHHHHHHHHh
Confidence 233345677777777777763 34433221 122 346778888877654
No 431
>PRK14700 recombination factor protein RarA; Provisional
Probab=56.44 E-value=1.5e+02 Score=26.72 Aligned_cols=84 Identities=18% Similarity=0.099 Sum_probs=41.5
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcH
Q 009977 426 QKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGM-----AEDAAIALFGLVEMGFKPESDSWALLVELICRGRKL 500 (521)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 500 (521)
+-.+.+.|+-++.+|++.|-+|....-..++-+...-|. ...|...++.....|++--.......+-.++.+-+-
T Consensus 138 RGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~La~aviyLA~aPKS 217 (300)
T PRK14700 138 RGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKS 217 (300)
T ss_pred hcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHcCCCc
Confidence 345677777777777776666665555555555555553 233444444445556332223333333333333333
Q ss_pred HHHHHHHHH
Q 009977 501 LFAFELLDE 509 (521)
Q Consensus 501 ~~A~~~~~~ 509 (521)
..+...+++
T Consensus 218 Ns~y~A~~~ 226 (300)
T PRK14700 218 NACYKALAQ 226 (300)
T ss_pred hHHHHHHHH
Confidence 333333333
No 432
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.19 E-value=49 Score=24.53 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=19.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHhhc
Q 009977 132 IFLNLMKHFSNCSLHERVLEMFHKIH 157 (521)
Q Consensus 132 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 157 (521)
-|..++..|...|.+++|++++.++.
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLA 66 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHh
Confidence 45677777888888888888877765
No 433
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=56.05 E-value=1.8e+02 Score=27.32 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=14.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 009977 206 NILIKHHCKRGTLESAFEVLKEM 228 (521)
Q Consensus 206 ~~l~~~~~~~g~~~~A~~~~~~~ 228 (521)
..|...+-.+|++++|.+++.+.
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el 157 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCEL 157 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhc
Confidence 44555666677777777766653
No 434
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=54.78 E-value=86 Score=25.58 Aligned_cols=60 Identities=5% Similarity=-0.006 Sum_probs=43.2
Q ss_pred hhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcH
Q 009977 86 SEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLH 146 (521)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (521)
++..|++.+..-. .++..+...++.-.|.++++.+.+.+...+..|.+..+..+.+.|-.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3455666555433 56666666677778999999999888777778888888888777754
No 435
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=54.48 E-value=1.8e+02 Score=26.77 Aligned_cols=91 Identities=22% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCcHhHH--HHHHHHHHhcCCHHHHHHHHHHHHH-----CCCccCH
Q 009977 345 IGYTTLINCFCRAGRVDEALELLKEMKER---GCKADIVTF--NIILGGLCREGKIEEALGMLEKLWY-----DGIYLNK 414 (521)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~ 414 (521)
.....++...-+.++.++|+++++++.+. .-.|+.+.| ......+...|+.+++.+.+.+... .++.++.
T Consensus 76 slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 76 SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Q ss_pred HH--HHHHHHHHHcCCCHHHHHH
Q 009977 415 AS--YRIVLNFSCQKGELEKAIE 435 (521)
Q Consensus 415 ~~--~~~l~~~~~~~g~~~~a~~ 435 (521)
++ |..--..|...|++....+
T Consensus 156 h~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 156 HSSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHH
No 436
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=54.43 E-value=3e+02 Score=29.42 Aligned_cols=51 Identities=18% Similarity=0.072 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCcchHHHHHHHHHhcC
Q 009977 273 DALTYNVLIDGFCRGGKVDRAKKIMEFMKN-NGCNPNVFNYTTLMNGFCKEG 323 (521)
Q Consensus 273 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~ 323 (521)
|..++..-...+...|++..+.+++.++.+ .|-.++...|..++..+...|
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 344444444455556666666666665554 233344445555555554444
No 437
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=54.16 E-value=48 Score=20.15 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=16.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009977 460 CKAGMAEDAAIALFGLVEMGFKPESDSWALLV 491 (521)
Q Consensus 460 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 491 (521)
.+.|-..++...+++|.+.|+.-+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555555555555555555555555544443
No 438
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=53.96 E-value=1.8e+02 Score=26.62 Aligned_cols=97 Identities=14% Similarity=0.065 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCCCcchHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCC----H
Q 009977 274 ALTYNVLIDGFCRGGKVDRAKKIMEFMKN----NGCNPNVFNYTT-LMNGFCKEGKLQEAKEVFDEMKNFLLKPD----T 344 (521)
Q Consensus 274 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~ 344 (521)
...+......|++.|+.+.|++.++...+ .|.+.|+..+.. ++-.|....-..+-++..+.+.+.|..-+ .
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 34455566667777777777666654433 344445433322 22223332223333444444444443322 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 345 IGYTTLINCFCRAGRVDEALELLKEMKE 372 (521)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 372 (521)
.+|..+- +....++.+|-.+|-+...
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 3343332 2334567777777666543
No 439
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.95 E-value=1e+02 Score=27.02 Aligned_cols=63 Identities=14% Similarity=0.073 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc---CC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009977 239 ITYSTLIDGLCKNGRFREAIELFEEMVSK---DQ-ILPDALTYNVLIDGFCRGGKVDRAKKIMEFMK 301 (521)
Q Consensus 239 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 301 (521)
..-..+...|...|++++|.++|+.+... +| ..+...+...+..++.+.|+.+....+--++.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34446788899999999999999988532 22 45566778888899999999998887765554
No 440
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=53.75 E-value=2.7e+02 Score=28.73 Aligned_cols=154 Identities=13% Similarity=0.144 Sum_probs=73.7
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhc---------C--C-----chHHHHHHHHhhhccCCcCH
Q 009977 67 SLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARY---------K--K-----FEAVDAVLRQMTYETCKFHE 130 (521)
Q Consensus 67 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~--~-----~~~a~~~~~~~~~~~~~~~~ 130 (521)
..|...|++++|+++--.+-..-.+.++...+..++.-|... + . .++...++++|.++.. +.
T Consensus 67 KVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl--~d 144 (929)
T KOG2062|consen 67 KVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERMIQKCL--DD 144 (929)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhh--hh
Confidence 457788999999998766522333445555555554433221 1 1 2344555555554431 22
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHhhhcCC--CCCcHHHHHH
Q 009977 131 GIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQ-VDLAQNFLKYSNQHLR--LKPNTCIFNI 207 (521)
Q Consensus 131 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~--~~~~~~~~~~ 207 (521)
.-|..++.......+ +.++++.. ............++..+....+ -+--.++++.+.+.+. ..|| |..
T Consensus 145 ~e~~~aiGia~E~~r----ld~ie~Ai--l~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PD---y~~ 215 (929)
T KOG2062|consen 145 NEYKQAIGIAFETRR----LDIIEEAI--LKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPD---YFS 215 (929)
T ss_pred hHHHHHHhHHhhhhh----HHHHHHHh--ccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCC---eee
Confidence 222222222222222 22233311 1111122233344444333222 2222333443333222 3343 445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 009977 208 LIKHHCKRGTLESAFEVLKEMKKS 231 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~~~~~ 231 (521)
+..+|.-..+.+.|.++++++.+.
T Consensus 216 vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 216 VCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eeeeeEEcCCHHHHHHHHHHHHhc
Confidence 667788888999999999998873
No 441
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.51 E-value=1.5e+02 Score=25.79 Aligned_cols=102 Identities=9% Similarity=-0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 414 KASYRIVLNFSCQKGELEKAIELLRLMLCR------GFLP-----------HYATSNELLVRLCKAGMAEDAAIALFGLV 476 (521)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~p-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 476 (521)
..+...-.+-+.+.|++++|...|++++.. .-+| ....+..+-.++...|++-++++...+.+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q ss_pred HCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 477 EMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 477 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
... +-+...|..-+.+-...=+.++|.+-|..+++.+|+
T Consensus 258 ~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 258 RHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred hcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
No 442
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=53.06 E-value=91 Score=23.03 Aligned_cols=12 Identities=8% Similarity=-0.008 Sum_probs=4.9
Q ss_pred CHHHHHHHHHHh
Q 009977 181 QVDLAQNFLKYS 192 (521)
Q Consensus 181 ~~~~a~~~~~~~ 192 (521)
..++|..+.+.+
T Consensus 21 cH~EA~tIa~wL 32 (116)
T PF09477_consen 21 CHQEANTIADWL 32 (116)
T ss_dssp -HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 443
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=52.27 E-value=1.9e+02 Score=26.54 Aligned_cols=117 Identities=14% Similarity=0.109 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh------cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHH
Q 009977 359 RVDEALELLKEMKERGCKADIVTFNIILGGLCR------EGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEK 432 (521)
Q Consensus 359 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 432 (521)
-++++..++++....+. |.++.....|.++-. .-+|.....+|+.+......| ..+.|-.+ +.....-.+.
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP-vV~LNRAV-Ala~~~Gp~a 347 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP-VVTLNRAV-ALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC-eEeehHHH-HHHHhhhHHh
Confidence 46667777777766654 566666666555432 125656666666665543332 22333322 2333444556
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 433 AIELLRLMLCRGFLPHYA-TSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 433 a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
++.+.+-+...+--.... .+..-...+.+.|+.++|...|++....
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 666666555431111122 2222345566777777777777777654
No 444
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=52.18 E-value=3.5e+02 Score=29.47 Aligned_cols=261 Identities=10% Similarity=0.036 Sum_probs=146.0
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHH
Q 009977 199 KPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYN 278 (521)
Q Consensus 199 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 278 (521)
.+|+.+-...+..+.+.+. +.+...+....+. ++...-...+.++.+.+........+..++.. +|...-.
T Consensus 632 D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D----~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~----~d~~VR~ 702 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTP-PGFGPALVAALGD----GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS----PDPVVRA 702 (897)
T ss_pred CCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC----CCHHHHH
Confidence 3566666666777776665 3344555555432 44444445555554443322222334444432 4555555
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009977 279 VLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAG 358 (521)
Q Consensus 279 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 358 (521)
..+.++...+..+ .. .+-.+++ .++..+-...+.++.+.+..+. +..... .++...-...+.++...+
T Consensus 703 ~A~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~ 770 (897)
T PRK13800 703 AALDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLG 770 (897)
T ss_pred HHHHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhc
Confidence 6666665543211 12 2222332 4566666666777766655432 222232 356666666677777766
Q ss_pred CHHH-HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHH
Q 009977 359 RVDE-ALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELL 437 (521)
Q Consensus 359 ~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 437 (521)
..+. +...+..+... ++...-...+.++...|..+.+...+..+... ++...-...+.++...+. +++...+
T Consensus 771 ~~~~~~~~~L~~ll~D---~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 771 AGGAPAGDAVRALTGD---PDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred cccchhHHHHHHHhcC---CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cchHHHH
Confidence 5443 34455555443 46777778888898888766554555555543 355566667777777765 4566666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009977 438 RLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVEL 493 (521)
Q Consensus 438 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 493 (521)
..++ -+|+..+-...+.++.+.+.-..+...+..+++ +++..+-.....+
T Consensus 844 ~~~L---~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~---D~d~~Vr~~A~~a 893 (897)
T PRK13800 844 VEAL---TDPHLDVRKAAVLALTRWPGDPAARDALTTALT---DSDADVRAYARRA 893 (897)
T ss_pred HHHh---cCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 6666 367777777788888775333456777766665 3455444443333
No 445
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=51.93 E-value=34 Score=17.83 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=6.8
Q ss_pred ChHHHHHHHHHHHhC
Q 009977 217 TLESAFEVLKEMKKS 231 (521)
Q Consensus 217 ~~~~A~~~~~~~~~~ 231 (521)
+.+.|..+|+++...
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 344444444444443
No 446
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=51.80 E-value=37 Score=32.45 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=69.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009977 170 STCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTC-IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGL 248 (521)
Q Consensus 170 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 248 (521)
..-+..+...+.++.|..++.++++ ..|+.. .|..-..++.+.+++..|+.=+.+..+..+ .-...|..-+.++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP--~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDP--TYIKAYVRRGTAV 82 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCc--hhhheeeeccHHH
Confidence 3345666677888888888888874 556544 344445778888888888877777666554 2334444445566
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 009977 249 CKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGF 284 (521)
Q Consensus 249 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 284 (521)
...+.+.+|+..|+.... +.|+..-....+.-|
T Consensus 83 m~l~~~~~A~~~l~~~~~---l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKK---LAPNDPDATRKIDEC 115 (476)
T ss_pred HhHHHHHHHHHHHHHhhh---cCcCcHHHHHHHHHH
Confidence 666777788888877754 355555455555443
No 447
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=51.70 E-value=39 Score=32.28 Aligned_cols=104 Identities=16% Similarity=0.074 Sum_probs=54.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 009977 316 MNGFCKEGKLQEAKEVFDEMKNFLLKPDT-IGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGK 394 (521)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 394 (521)
+.-+...+.++.|..++.++.+ ..|+- ..|..-..++.+.+++..|+.=+..+++..+. ....|..-..++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHH
Confidence 4445566667777777776665 34442 22333335666666776666666655555322 22333334445555555
Q ss_pred HHHHHHHHHHHHHCCCccCHHHHHHHHHHH
Q 009977 395 IEEALGMLEKLWYDGIYLNKASYRIVLNFS 424 (521)
Q Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (521)
+.+|...|+..... .|+..-....+.-|
T Consensus 88 ~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 66666666555443 44544444444433
No 448
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=51.60 E-value=31 Score=29.39 Aligned_cols=53 Identities=30% Similarity=0.229 Sum_probs=35.2
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009977 425 CQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMG 479 (521)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 479 (521)
.+.++.+.+.+++.++.+ +.| ....|..+...-.+.|+++.|.+.|++.++.+
T Consensus 6 ~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 6 AESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred cccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 456777777777777763 444 45556666666667777777777777777653
No 449
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=51.33 E-value=84 Score=22.15 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=18.8
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 009977 250 KNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRA 293 (521)
Q Consensus 250 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 293 (521)
..|+.+.|.+++..+. ++ | ..|..++.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg---~--~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QK---E--GWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC---C--cHHHHHHHHHHHcCchhhh
Confidence 3455556666665554 31 2 2345555555555544333
No 450
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=50.38 E-value=1.7e+02 Score=26.90 Aligned_cols=96 Identities=13% Similarity=-0.028 Sum_probs=59.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 009977 379 IVTFNIILGGLCREGKIEEALGMLEKLWYD---GIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNE 454 (521)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ 454 (521)
...|.-=.+-|.+..++..|...|.+-++. +...+...|+.-..+-...|++..|+.=....+ .+.| +...|..
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al--~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAAL--KLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--hcCcchhhhhhh
Confidence 345566667777778888888888776664 223344556666666666777777777766666 3556 3334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 009977 455 LLVRLCKAGMAEDAAIALFGLV 476 (521)
Q Consensus 455 l~~~~~~~g~~~~a~~~~~~~~ 476 (521)
=..++....++++|....+...
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhh
Confidence 4445556666666666655443
No 451
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=48.90 E-value=73 Score=20.73 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=21.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHH-----HcCCCHHHHHHH
Q 009977 390 CREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFS-----CQKGELEKAIEL 436 (521)
Q Consensus 390 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~ 436 (521)
...|++-+|.++++.+-.....+....+..+|... .+.|+...|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34556666666666655432222334444444322 234555555443
No 452
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=48.82 E-value=2e+02 Score=25.76 Aligned_cols=109 Identities=15% Similarity=0.091 Sum_probs=61.8
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCCCcchH-HHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 262 EEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKN----NGCNPNVFNY-TTLMNGFCKEGKLQEAKEVFDEMK 336 (521)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~ 336 (521)
++..+.+|..--...+..+...|++.++.+.+.+..++..+ .|.+.|+... ..|.-.|....-.++-++..+.+.
T Consensus 103 ~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~i 182 (412)
T COG5187 103 REKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDII 182 (412)
T ss_pred HHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 33333334444466778888888888888888877765544 3444443221 123333444444667777777777
Q ss_pred hCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 337 NFLLKPD----TIGYTTLINCFCRAGRVDEALELLKEMKE 372 (521)
Q Consensus 337 ~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 372 (521)
+.|..-+ -.+|..+- +....++.+|-.++.....
T Consensus 183 EkGgDWeRrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 183 EKGGDWERRNRYKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HhCCCHHhhhhHHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 7765432 22333322 2234567777777766654
No 453
>PRK09462 fur ferric uptake regulator; Provisional
Probab=48.49 E-value=1.1e+02 Score=24.14 Aligned_cols=59 Identities=8% Similarity=0.190 Sum_probs=40.3
Q ss_pred hCCCCCCCHHHHHHHHHHHHhc-CCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcH
Q 009977 87 EQKGFNHNNATYATILDKLARY-KKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLH 146 (521)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (521)
+..|++.+.. -..++..+... +..-.|.++++.+.+.+...+..|.+..+..+...|-.
T Consensus 9 ~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 9 KKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4456665444 33455666654 45778899999998887667777888888877777643
No 454
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.02 E-value=2.2e+02 Score=26.11 Aligned_cols=90 Identities=18% Similarity=0.129 Sum_probs=42.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 009977 244 LIDGLCKNGRFREAIELFEEMVSKDQILPD--ALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK 321 (521)
Q Consensus 244 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 321 (521)
=++-|.+..++..|...|.+-++...-.|| .+.|+.-..+-.-.|++..|+.=....+... +.....|..-..++..
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRGAKCLLE 165 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhhhHHHHH
Confidence 344455566666666666655544222222 3344444444445555555555555554432 2223333333444444
Q ss_pred cCCHHHHHHHHHH
Q 009977 322 EGKLQEAKEVFDE 334 (521)
Q Consensus 322 ~~~~~~A~~~~~~ 334 (521)
...++.|....++
T Consensus 166 Le~~~~a~nw~ee 178 (390)
T KOG0551|consen 166 LERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHhh
Confidence 5555555444443
No 455
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=48.00 E-value=1.4e+02 Score=23.64 Aligned_cols=48 Identities=13% Similarity=0.202 Sum_probs=22.4
Q ss_pred cchHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 009977 309 VFNYTTLMNGFCKEGK-LQEAKEVFDEMKNFLLKPDTIGYTTLINCFCR 356 (521)
Q Consensus 309 ~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 356 (521)
...|..++....+..- .-.+..+|.-+.+.+.+.+..-|..++.++.+
T Consensus 79 ~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 79 NSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred cchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 3445555554443333 22344444555444445555555555555443
No 456
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.04 E-value=1.8e+02 Score=29.34 Aligned_cols=87 Identities=17% Similarity=0.211 Sum_probs=62.9
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCc------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009977 176 LIESNQVDLAQNFLKYSNQHLRLKPN------TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLC 249 (521)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (521)
..+..++..+.++|..-++. ++.| ......|.-+|....+.|.|.+++++..+..+ .++.+-..+..+..
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~--i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~--~~~l~q~~~~~~~~ 439 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKD--IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR--QSPLCQLLMLQSFL 439 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHh--ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHH
Confidence 34567788888888776542 2222 23456667778889999999999999998775 46666666777788
Q ss_pred hcCChHHHHHHHHHHHh
Q 009977 250 KNGRFREAIELFEEMVS 266 (521)
Q Consensus 250 ~~g~~~~A~~~~~~~~~ 266 (521)
..|..++|+........
T Consensus 440 ~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 440 AEDKSEEALTCLQKIKS 456 (872)
T ss_pred HhcchHHHHHHHHHHHh
Confidence 88888888888776644
No 457
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.77 E-value=4.4e+02 Score=29.07 Aligned_cols=158 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHhhh----------------------CCCCCCCHHH-----HHHHHHHHHhcCCchHHHHH
Q 009977 65 AISLIKCEKEPQCALEIFNTVSE----------------------QKGFNHNNAT-----YATILDKLARYKKFEAVDAV 117 (521)
Q Consensus 65 l~~~~~~~~~~~~A~~~~~~~~~----------------------~~~~~~~~~~-----~~~l~~~~~~~~~~~~a~~~ 117 (521)
+..+|...|.+.+|+..|.++.. ..|-.+.... |..+++.+-+.+..+.+.++
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQl 1005 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQL 1005 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHH
Q ss_pred HHHhhhc---cCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCH------------
Q 009977 118 LRQMTYE---TCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQV------------ 182 (521)
Q Consensus 118 ~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~------------ 182 (521)
-...++. ..+.-..++..+.+.....|.+-+|.+.+-+- .........+..++-.+.+.|++
T Consensus 1006 A~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n---pdserrrdcLRqlvivLfecg~l~~L~~fpfigl~ 1082 (1480)
T KOG4521|consen 1006 AVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN---PDSERRRDCLRQLVIVLFECGELEALATFPFIGLE 1082 (1480)
T ss_pred HHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC---CcHHHHHHHHHHHHHHHHhccchHHHhhCCccchH
Q ss_pred HHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHH
Q 009977 183 DLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVL 225 (521)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 225 (521)
++....+.....+.........|+.|-..+...+++.+|-.+.
T Consensus 1083 ~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1083 QEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
No 458
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.44 E-value=3.8e+02 Score=28.34 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcH--HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009977 171 TCLNLLIESNQVDLAQNFLKYSNQHLRLKPNT--CIFNILIKHHCKRGTLESAFEVLKEMK 229 (521)
Q Consensus 171 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 229 (521)
.+.+.|...|++++|+++-+ ..|+. .++..-+..|.+.+++..|-+++.++.
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar-------~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIAR-------TRPDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHHHHhcchHHHHHHhcc-------CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 34566777788888776543 22442 244555667777778888888777663
No 459
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.36 E-value=66 Score=19.53 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=17.0
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009977 426 QKGELEKAIELLRLMLCRGFLPHYATSNELL 456 (521)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 456 (521)
+.|-..++..++++|.+.|+.-+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555666665555555555544443
No 460
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=46.16 E-value=2.2e+02 Score=25.51 Aligned_cols=105 Identities=13% Similarity=0.082 Sum_probs=57.1
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhc---CCCCCcHHH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC
Q 009977 162 EKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQH---LRLKPNTCI-FNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN 237 (521)
Q Consensus 162 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 237 (521)
..-...++..+..-|++.++.+.+.++.++.... .|.+.|+.. -..|.-.|....-.++-++..+.|.+.|....-
T Consensus 111 E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeR 190 (412)
T COG5187 111 ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWER 190 (412)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHh
Confidence 3444566777777888888887777776665432 244445432 233344454455567777777777777754111
Q ss_pred HHHHHHH-HHHHHhcCChHHHHHHHHHHHh
Q 009977 238 LITYSTL-IDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 238 ~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
..-|... +-.+....++.+|-.++...+.
T Consensus 191 rNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 191 RNRYKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 1111111 1112334556666666666544
No 461
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.83 E-value=1.2e+02 Score=22.45 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=16.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 311 NYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
-|..|+..|...|..++|.+++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 455666666666666666666665544
No 462
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=45.01 E-value=2e+02 Score=26.07 Aligned_cols=52 Identities=23% Similarity=0.425 Sum_probs=27.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 208 LIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
++..+.+.++..+..+.+..+.. ...-...+..+...|++..|++++.+...
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~-------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT-------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34444444444444444444432 22233445556667777777777766543
No 463
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=44.98 E-value=1.2e+02 Score=22.90 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=20.0
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009977 261 FEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (521)
|.++....+-.|...+...+...+.-. ...|..++++|.+.|
T Consensus 6 y~~L~~~~~~~~~~vtl~elA~~l~cS--~Rn~r~lLkkm~~~g 47 (115)
T PF12793_consen 6 YQRLWQHYGGQPVEVTLDELAELLFCS--RRNARTLLKKMQEEG 47 (115)
T ss_pred HHHHHHHcCCCCcceeHHHHHHHhCCC--HHHHHHHHHHHHHCC
Confidence 333433333334444555555544322 235666666666654
No 464
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.31 E-value=1.7e+02 Score=30.81 Aligned_cols=93 Identities=15% Similarity=0.114 Sum_probs=58.2
Q ss_pred HcCCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHh---------------cCCHHHHHHHHHHHHHCCCCCC
Q 009977 425 CQKGELEKAIELLRLMLCR------GFLPHYATSNELLVRLCK---------------AGMAEDAAIALFGLVEMGFKPE 483 (521)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~------~~~p~~~~~~~l~~~~~~---------------~g~~~~a~~~~~~~~~~~~~~~ 483 (521)
...|.+.+|++.|+.++-. .-.-+..-...++..+.. .+..+.+.++-.-.....++|-
T Consensus 1002 tt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1002 TTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred hccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Confidence 3579999999999998743 001133334445554421 2234444333333344555665
Q ss_pred H--HHHHHHHHHHHccCcHHHHHHHHHHHHHcCccC
Q 009977 484 S--DSWALLVELICRGRKLLFAFELLDELVIKESGT 517 (521)
Q Consensus 484 ~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 517 (521)
. -+....+..+.+.+++..|..+-.++++..+..
T Consensus 1082 H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~ 1117 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSP 1117 (1202)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Confidence 5 345567788899999999999999998877643
No 465
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=44.29 E-value=70 Score=23.89 Aligned_cols=45 Identities=9% Similarity=0.149 Sum_probs=28.2
Q ss_pred HHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCc
Q 009977 101 ILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSL 145 (521)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (521)
++..+...+..-.|.++++.+.+.+...+..|.+..++.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 445555555556677777777766655566666666666666554
No 466
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.10 E-value=50 Score=29.59 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCc
Q 009977 383 NIILGGLCREGKIEEALGMLEKLWYDGIY 411 (521)
Q Consensus 383 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 411 (521)
+..|....+.||+++|+.+++++.+.|..
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 45555555555555555555555555544
No 467
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.75 E-value=2.9e+02 Score=26.20 Aligned_cols=64 Identities=16% Similarity=0.086 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 203 CIFNILIKHHCKRGTLESAFEVLKEMKKSQMS-YPNLITYSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 203 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
..+..+...|..+|+++.|++.|.+...---. ......|..++..-.-.|+|.....+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 37888999999999999999999986542110 02234566677777778999888888888754
No 468
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=42.42 E-value=4.9e+02 Score=28.43 Aligned_cols=28 Identities=4% Similarity=0.326 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhCC--CHHHHHHHHHHHHHc
Q 009977 276 TYNVLIDGFCRGG--KVDRAKKIMEFMKNN 303 (521)
Q Consensus 276 ~~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 303 (521)
-+..++.+|.+.+ +++.|+.....+.+.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3455666666666 666666666666654
No 469
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=42.31 E-value=2.6e+02 Score=25.29 Aligned_cols=18 Identities=28% Similarity=0.767 Sum_probs=10.9
Q ss_pred hHHHHHHHHHhcCCHHHH
Q 009977 311 NYTTLMNGFCKEGKLQEA 328 (521)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A 328 (521)
.|.-|+.+++..|+.+-.
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 455566666666666543
No 470
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=42.16 E-value=1.6e+02 Score=22.63 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009977 219 ESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFE 262 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 262 (521)
+...++|..|...++...-+..|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34677888888877764555667777777788888888888775
No 471
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=42.15 E-value=1.7e+02 Score=22.90 Aligned_cols=66 Identities=14% Similarity=0.079 Sum_probs=35.8
Q ss_pred CcHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHC-CCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 009977 377 ADIVTFNIILGGLCREG---KIEEALGMLEKLWYD-GIYLNKASYRIVLNFSCQKGELEKAIELLRLMLC 442 (521)
Q Consensus 377 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (521)
++..+--.+..++.+.. +..+.+.+++.+.+. ...-...-...|.-++.+.+++++++++.+.+++
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444445555555544 345566677766652 2221222333444456677777777777777664
No 472
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=41.69 E-value=66 Score=24.29 Aligned_cols=47 Identities=9% Similarity=0.159 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCc
Q 009977 99 ATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSL 145 (521)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (521)
..++..+...+..-.|.++++.+.+.+...+..|....+..+.+.|-
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 45666677776677888888888877767777777777777776664
No 473
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.97 E-value=1.6e+02 Score=23.28 Aligned_cols=62 Identities=26% Similarity=0.163 Sum_probs=31.4
Q ss_pred HHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009977 402 LEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGM 464 (521)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 464 (521)
.+.+.+.|.++++. -..++..+...++.-.|.++++.+.+.+..-+..|...-+..+...|-
T Consensus 9 ~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 9 IERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 34444455554432 233444455555556666677666655444444444444455555543
No 474
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=40.95 E-value=2.7e+02 Score=25.74 Aligned_cols=64 Identities=19% Similarity=0.191 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHCCCccCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009977 395 IEEALGMLEKLWYDGIYLNK----ASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLC 460 (521)
Q Consensus 395 ~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 460 (521)
.++.+.++..+... -|+. ..|-.++......|.++.++.+|++++..|-.|-...-..+++.+.
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34555555555543 2222 3455566666666777777777777776666665555554555443
No 475
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=40.85 E-value=3.9e+02 Score=26.85 Aligned_cols=50 Identities=10% Similarity=0.191 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHh-----c---CChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 009977 236 PNLITYSTLIDGLCK-----N---GRFREAIELFEEMVSKDQILPDALTYNVLIDGFC 285 (521)
Q Consensus 236 ~~~~~~~~l~~~~~~-----~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 285 (521)
|...+|..+...+.+ . .+...+++++-.++.-++..-+..+|..+....-
T Consensus 409 ~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~ 466 (547)
T PF14929_consen 409 PSHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLP 466 (547)
T ss_pred CCchHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhh
Confidence 455555555555554 1 2333455555555554444555555555544443
No 476
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=40.68 E-value=1.7e+02 Score=22.50 Aligned_cols=41 Identities=12% Similarity=-0.020 Sum_probs=23.0
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHH
Q 009977 468 AAIALFGLVEMGFKPES-DSWALLVELICRGRKLLFAFELLD 508 (521)
Q Consensus 468 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 508 (521)
...+|..|.+.++--.. ..|...+..+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44556666655544333 344455555566677777666664
No 477
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=40.25 E-value=1.1e+02 Score=20.59 Aligned_cols=12 Identities=8% Similarity=-0.047 Sum_probs=5.2
Q ss_pred CCHHHHHHHHHH
Q 009977 236 PNLITYSTLIDG 247 (521)
Q Consensus 236 ~~~~~~~~l~~~ 247 (521)
.++..||++...
T Consensus 29 RsPQLYnAI~k~ 40 (82)
T PF11123_consen 29 RSPQLYNAIGKL 40 (82)
T ss_pred cChHHHHHHHHH
Confidence 344444444433
No 478
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=39.93 E-value=1.4e+02 Score=28.67 Aligned_cols=136 Identities=15% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcC------
Q 009977 354 FCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQK------ 427 (521)
Q Consensus 354 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 427 (521)
+...|++.+|+..|+.++ +...+...-...+.+++.+++....+ .+....+..-.+.
T Consensus 214 ~~t~gKF~eA~~~Fr~iL----------~~i~l~vv~~~~E~~e~~eli~icrE-------Yilgl~iEl~Rr~l~~~~~ 276 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSIL----------HSIPLLVVESREEEDEAKELIEICRE-------YILGLSIELERRELPKDPV 276 (422)
T ss_dssp HHHTT-HHHHHHHHHHHH----------HHHHC--BSSCHHHHHHHHHHHHHHH-------HHHHHHHHHHHCTS-TTTH
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhheeeecCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccccch
Q ss_pred CCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHH
Q 009977 428 GELEKAIELLRLMLCRGFLP--HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFE 505 (521)
Q Consensus 428 g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 505 (521)
.+.++.+++..-+....+.| -.-++...+..+.+.+++..|..+-+++++.+..+ ...++|.+
T Consensus 277 ~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~---------------~~a~qArK 341 (422)
T PF06957_consen 277 EDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP---------------EVAEQARK 341 (422)
T ss_dssp HHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC---------------HHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH---------------HHHHHHHH
Q ss_pred HHHHHHHcCccCccCC
Q 009977 506 LLDELVIKESGTIQVP 521 (521)
Q Consensus 506 ~~~~m~~~~~~~~~v~ 521 (521)
++....+++.+.+++.
T Consensus 342 il~~~e~~~tDa~~i~ 357 (422)
T PF06957_consen 342 ILQACERNPTDAHEID 357 (422)
T ss_dssp HHHHHCCS--BSS--S
T ss_pred HHHHHhcCCCCceecC
No 479
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=39.09 E-value=77 Score=18.17 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=19.7
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHH
Q 009977 486 SWALLVELICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 486 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 512 (521)
+|..|.+.-...+++++|.+=|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 566677777777888888777777664
No 480
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=38.78 E-value=2.2e+02 Score=25.76 Aligned_cols=41 Identities=10% Similarity=0.276 Sum_probs=18.4
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 296 IMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMK 336 (521)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 336 (521)
+++.+.+.++.|.-.+|.-+.-.+.+.=.+.+.+.+|+.+.
T Consensus 265 L~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 265 LWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 34444444444444444444444444444444444444443
No 481
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.71 E-value=37 Score=26.12 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCC
Q 009977 288 GKVDRAKKIMEFMKNNGCNPN 308 (521)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~~~ 308 (521)
|.-..|..+|..|++.|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 333445555555555554444
No 482
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=38.65 E-value=43 Score=22.07 Aligned_cols=50 Identities=10% Similarity=0.105 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHcc
Q 009977 93 HNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNC 143 (521)
Q Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (521)
|....++.++...++..-.+++...+.+....| ..+..+|..-++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 445556677777777666777777777777766 35556666666655553
No 483
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=38.39 E-value=2e+02 Score=22.76 Aligned_cols=80 Identities=14% Similarity=0.219 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCcHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCccCHHHHHHH
Q 009977 347 YTTLINCFCRAGRVDEALELLKEMKERGC-----KADIVTFNIILGGLCREGK-IEEALGMLEKLWYDGIYLNKASYRIV 420 (521)
Q Consensus 347 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l 420 (521)
.+.++.-....+++...+.+++.+..... ..+...|..++.+.....- .-.+..+|.-+.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45555555555666666665555532100 1133455556655544433 23345555555555555566666666
Q ss_pred HHHHHc
Q 009977 421 LNFSCQ 426 (521)
Q Consensus 421 ~~~~~~ 426 (521)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 655443
No 484
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=38.35 E-value=81 Score=27.08 Aligned_cols=50 Identities=22% Similarity=0.217 Sum_probs=21.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
.++.+.|.+++.+....-+ .....|..+.....+.|+++.|.+.|++..+
T Consensus 8 ~~D~~aaaely~qal~lap--~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 8 SGDAEAAAELYNQALELAP--EWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred cCChHHHHHHHHHHhhcCc--hhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 3444444444444443322 2333444444444444444444444444443
No 485
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=38.31 E-value=5e+02 Score=27.34 Aligned_cols=367 Identities=11% Similarity=0.010 Sum_probs=175.4
Q ss_pred cCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHH---HHHhcCCHHHHHHHHHHhhhcCCCCCcHHH
Q 009977 128 FHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLN---LLIESNQVDLAQNFLKYSNQHLRLKPNTCI 204 (521)
Q Consensus 128 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 204 (521)
-+-..+..||..+.+.|++++....-..|.... +.++..|...+. .....+...++..++++.+..+.. +..
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~--pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~---v~i 185 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA--PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNS---VPI 185 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc--CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccccc---chH
Confidence 345567789999999999988777766665323 344455555543 333467888888999888754433 333
Q ss_pred HHHHHHHH-------HhcCChHHHHHHHHHHHhCCCCCC--CHHHHHHH---HHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 009977 205 FNILIKHH-------CKRGTLESAFEVLKEMKKSQMSYP--NLITYSTL---IDGLCKNGRFREAIELFEEMVSKDQILP 272 (521)
Q Consensus 205 ~~~l~~~~-------~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 272 (521)
|.-.+..+ .+.++++....+|.+....-.... ....|... -..|..+-..++...+|..-+.. +-
T Consensus 186 w~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~---~~ 262 (881)
T KOG0128|consen 186 WEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ---PL 262 (881)
T ss_pred HHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc---cc
Confidence 33333333 335678888888888765322111 12223222 23344444446666676665543 22
Q ss_pred CHHHHHHHHHHHHh-------CCCHHHHHH-------HHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009977 273 DALTYNVLIDGFCR-------GGKVDRAKK-------IMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNF 338 (521)
Q Consensus 273 ~~~~~~~l~~~~~~-------~~~~~~a~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 338 (521)
|..+-+.-..-..+ ..+++.+.+ .+....+.- ++-...|..++..+.+.|+...-..+++++...
T Consensus 263 D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~-~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E 341 (881)
T KOG0128|consen 263 DEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKE-PIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE 341 (881)
T ss_pred hhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 32222111111111 112222222 222222221 233345566677777777776666666665542
Q ss_pred CCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCC----
Q 009977 339 LLKPDTIGY---TTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGK-IEEALGMLEKLWYDGI---- 410 (521)
Q Consensus 339 ~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~---- 410 (521)
.. .+...| ......- .+-...+........... .-....|...+-++.+.+. .......|......++
T Consensus 342 ~~-~~~~~wi~y~~~~d~e--Lkv~~~~~~~~~ra~R~c-p~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~ 417 (881)
T KOG0128|consen 342 MV-LDRALWIGYGVYLDTE--LKVPQRGVSVHPRAVRSC-PWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHN 417 (881)
T ss_pred cc-ccHHHHhhhhhhcccc--cccccccccccchhhcCC-chHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHH
Confidence 11 122222 1111111 111112222222222211 1122233333333333332 1111222222222211
Q ss_pred -----------ccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHC
Q 009977 411 -----------YLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLC-KAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 411 -----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~ 478 (521)
..+...|..+-. .+..|...|.........+...+......... -.++.+.+..+++.....
T Consensus 418 ~~~~~rr~~~~~~~s~~~s~lr~------~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty 491 (881)
T KOG0128|consen 418 DYLAYRRRCTNIIDSQDYSSLRA------AFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTY 491 (881)
T ss_pred HHHHHHHhhcccchhhhHHHHHH------HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccC
Confidence 112222222221 23455555555554334454444444444433 467889999999887765
Q ss_pred CCCCCHH-HHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 009977 479 GFKPESD-SWALLVELICRGRKLLFAFELLDELVIKE 514 (521)
Q Consensus 479 ~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 514 (521)
|. -+.. .|...+..-...|+...++.+++.+....
T Consensus 492 ~~-~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~ 527 (881)
T KOG0128|consen 492 GG-GSIAGKWLEAINLEREYGDGPSARKVLRKAYSQV 527 (881)
T ss_pred Cc-chHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcC
Confidence 42 2222 55555555556788888888877776653
No 486
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.12 E-value=38 Score=26.08 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=15.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009977 462 AGMAEDAAIALFGLVEMGFKPESDSWALLV 491 (521)
Q Consensus 462 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 491 (521)
.|.-.+|..+|++|++.|-+|| .|..|+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll 135 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALL 135 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHH
Confidence 4444556666666666665555 344444
No 487
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=38.00 E-value=2.4e+02 Score=23.58 Aligned_cols=27 Identities=7% Similarity=0.192 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009977 278 NVLIDGFCRGGKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 278 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (521)
.+++..|-+.-++.+..++++.|.+..
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~ 162 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQ 162 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666667777777777776543
No 488
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=37.25 E-value=3.2e+02 Score=24.77 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=13.4
Q ss_pred cCHHHHHHHHHHHHcCCCHHHHH
Q 009977 412 LNKASYRIVLNFSCQKGELEKAI 434 (521)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~a~ 434 (521)
.|+..|..+..+|.-.|+...+.
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHH
Confidence 35566666666666666554444
No 489
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=37.21 E-value=2.7e+02 Score=23.97 Aligned_cols=99 Identities=20% Similarity=0.226 Sum_probs=57.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---cHhHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCccCH
Q 009977 340 LKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKA---DIVTF--NIILGGLCREGKIEEALGMLEKLWYDGIYLNK 414 (521)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 414 (521)
+.+...-+|.|+--|.-...+.+|-+.|.. +.|+.| |..++ ..-+......|+.++|++....+...-+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 445556667776666666666666666643 344443 33333 34456677889999998888877544333343
Q ss_pred HHHHHHHH----HHHcCCCHHHHHHHHHHH
Q 009977 415 ASYRIVLN----FSCQKGELEKAIELLRLM 440 (521)
Q Consensus 415 ~~~~~l~~----~~~~~g~~~~a~~~~~~~ 440 (521)
..+-.+.. -..+.|..++|+++.+.=
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33322221 245677777777777653
No 490
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=37.11 E-value=1.4e+02 Score=20.57 Aligned_cols=60 Identities=18% Similarity=0.082 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 413 NKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVE 477 (521)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 477 (521)
+...-...+.+..+.++ .++...+..+. -.++..+-...+.++.+.|+ +++...+.++..
T Consensus 13 ~~~vr~~a~~~L~~~~~-~~~~~~L~~~l---~d~~~~vr~~a~~aL~~i~~-~~~~~~L~~~l~ 72 (88)
T PF13646_consen 13 DPQVRAEAARALGELGD-PEAIPALIELL---KDEDPMVRRAAARALGRIGD-PEAIPALIKLLQ 72 (88)
T ss_dssp SHHHHHHHHHHHHCCTH-HHHHHHHHHHH---TSSSHHHHHHHHHHHHCCHH-HHTHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCC-HhHHHHHHHHH---cCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHc
Confidence 44444445555554443 34444444444 13555555555555555553 334444444443
No 491
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=36.69 E-value=3.8e+02 Score=25.53 Aligned_cols=18 Identities=11% Similarity=0.324 Sum_probs=8.6
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 009977 353 CFCRAGRVDEALELLKEM 370 (521)
Q Consensus 353 ~~~~~~~~~~A~~~~~~~ 370 (521)
+|.-.+++.+|.+.|-.+
T Consensus 281 ayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 281 AYLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445555555544443
No 492
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=36.63 E-value=2.8e+02 Score=24.01 Aligned_cols=132 Identities=14% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 009977 366 LLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGF 445 (521)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (521)
..+..++.|-.-....+..++-.+...|+++.|+++.+.+++.|.......-..+-..++ ++.........+.|-
T Consensus 70 ~V~g~L~~g~~~qd~Vl~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~va-----eev~~~A~~~~~ag~ 144 (230)
T PHA02537 70 WVEGVLAAGAGYQDDVLMTVMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVA-----EEVANAALKAASAGE 144 (230)
T ss_pred HHHHHHHcCCCCCCCeeeEeeeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHH-----HHHHHHHHHHHHcCC
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---------HccCcHHHHHHHHHHHHHcCcc
Q 009977 446 LPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELI---------CRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 446 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
..++.....+...-......++...- .|..+...+ ...++...|..+++++.+.++.
T Consensus 145 ~~e~~~~~~~~~l~~~~dmpd~vrAK--------------l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 145 SVEPYFLRVFLDLTTEWDMPDEVRAK--------------LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred CCChHHHHHHHHHHhcCCCChHHHHH--------------HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
No 493
>PF13934 ELYS: Nuclear pore complex assembly
Probab=36.27 E-value=2.9e+02 Score=23.94 Aligned_cols=96 Identities=21% Similarity=0.121 Sum_probs=45.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHH
Q 009977 355 CRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAI 434 (521)
Q Consensus 355 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 434 (521)
...+++++|++.+-.- ...| ..-..++.++...|+.+.|+.+++...-.. .+......++.. ..++.+.+|.
T Consensus 89 LD~~~~~~A~~~L~~p---s~~~--~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~v~EAf 160 (226)
T PF13934_consen 89 LDHGDFEEALELLSHP---SLIP--WFPDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGLVTEAF 160 (226)
T ss_pred hChHhHHHHHHHhCCC---CCCc--ccHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCCHHHHH
Confidence 3445566666555221 1111 112245666666677777777666543221 122223333333 4556677776
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009977 435 ELLRLMLCRGFLPHYATSNELLVRLCK 461 (521)
Q Consensus 435 ~~~~~~~~~~~~p~~~~~~~l~~~~~~ 461 (521)
.+-+...+.. ....+..++..+..
T Consensus 161 ~~~R~~~~~~---~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 161 SFQRSYPDEL---RRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHhCchhh---hHHHHHHHHHHHHH
Confidence 6655544211 12344445555443
No 494
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=36.18 E-value=1.7e+02 Score=27.16 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=18.3
Q ss_pred HHHHHHHccCcHHHHHHHHHhhccccCCCCCHhH
Q 009977 135 NLMKHFSNCSLHERVLEMFHKIHPITREKPSLKA 168 (521)
Q Consensus 135 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 168 (521)
.+++.|.+.|.+++|+++...+.......|+...
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~l 144 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPL 144 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHHHHHHhccCchh
Confidence 4556666666666666665554443333444333
No 495
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=35.95 E-value=4.4e+02 Score=26.30 Aligned_cols=103 Identities=11% Similarity=0.081 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHH
Q 009977 74 EPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMF 153 (521)
Q Consensus 74 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 153 (521)
..++....+....+..|+..+......++... .|++..|..+++++...+.......-...+......-.-+...+++
T Consensus 188 s~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s--~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~ 265 (507)
T PRK06645 188 SFEEIFKLLEYITKQENLKTDIEALRIIAYKS--EGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFV 265 (507)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHH
Q ss_pred HhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC
Q 009977 154 HKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKP 200 (521)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 200 (521)
+.+.. |+.+.|+.+++.+... |..|
T Consensus 266 ~ai~~---------------------~d~~~Al~~l~~L~~~-g~~~ 290 (507)
T PRK06645 266 EYIIH---------------------RETEKAINLINKLYGS-SVNL 290 (507)
T ss_pred HHHHc---------------------CCHHHHHHHHHHHHHc-CCCH
No 496
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=35.57 E-value=1.6e+02 Score=20.83 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=5.2
Q ss_pred CCHHHHHHHHHHH
Q 009977 393 GKIEEALGMLEKL 405 (521)
Q Consensus 393 g~~~~a~~~~~~~ 405 (521)
|+.+.|.+++..+
T Consensus 50 g~~~~ar~LL~~L 62 (88)
T cd08819 50 GNESGARELLKRI 62 (88)
T ss_pred CcHHHHHHHHHHh
Confidence 3344444444433
No 497
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=35.38 E-value=3e+02 Score=23.98 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=29.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHH
Q 009977 244 LIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCR-GGKVDRAKKIMEFMK 301 (521)
Q Consensus 244 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 301 (521)
++....+.|+++++.++++++... +...+..-.+.+..+|-. .|....+++++..+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~-~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEM-NPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHT-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHcc-CCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 455566667777777777777665 344455555555555422 344444555554444
No 498
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=35.15 E-value=6.5e+02 Score=28.18 Aligned_cols=131 Identities=18% Similarity=0.093 Sum_probs=73.1
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 009977 306 NPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN-----FLLK--PDTIGYTTLINCFCRAGRVDEALELLKEMKER----- 373 (521)
Q Consensus 306 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 373 (521)
+.....|..|...+.+.|+.++|...-....- .|.. .+...|..+.......+....|+..+.+....
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ 1049 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSS 1049 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcccc
Confidence 44555677778888888888888776554321 1111 12445555555555666777777766665442
Q ss_pred CC-CC-cHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC--ccCHHHHHHHHHHHHcCCCHHHHHHH
Q 009977 374 GC-KA-DIVTFNIILGGLCREGKIEEALGMLEKLWYD-----GI--YLNKASYRIVLNFSCQKGELEKAIEL 436 (521)
Q Consensus 374 ~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~g~~~~a~~~ 436 (521)
|. .| ...+++.+-..+...++++.|.++++.+... |. -.+..++..+...+...+++..|+..
T Consensus 1050 ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1050 GEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred CCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 11 22 3333444444444556777888877776653 21 12334455565555555655554443
No 499
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=35.08 E-value=1.8e+02 Score=21.41 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=9.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 009977 385 ILGGLCREGKIEEALGMLEKL 405 (521)
Q Consensus 385 l~~~~~~~g~~~~a~~~~~~~ 405 (521)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444455555555555443
No 500
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=34.60 E-value=7e+02 Score=27.94 Aligned_cols=157 Identities=15% Similarity=0.053 Sum_probs=91.0
Q ss_pred HHHHHhcCCHHHHHH------HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HHcCCCCcHhHH
Q 009977 316 MNGFCKEGKLQEAKE------VFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEM-------KERGCKADIVTF 382 (521)
Q Consensus 316 ~~~~~~~~~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~~~ 382 (521)
.+.....|.+.+|.+ ++...-..-..+....|..+...+-+.++.++|+..-... ......-+...|
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 344455566666666 4442222111233566778888888899999988754432 111112234456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-ccCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHC-----CCC--CC
Q 009977 383 NIILGGLCREGKIEEALGMLEKLWYD-----GI-YLNKA-SYRIVLNFSCQKGELEKAIELLRLMLCR-----GFL--PH 448 (521)
Q Consensus 383 ~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~--p~ 448 (521)
..+.-.+...+....|...+.+.... |. .|... +++.+-..+-..++++.|+++.+.+... |.. ++
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~ 1098 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELET 1098 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhh
Confidence 66665666666777787777766543 22 33333 3344433444558888899888887753 211 25
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHH
Q 009977 449 YATSNELLVRLCKAGMAEDAAIAL 472 (521)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~a~~~~ 472 (521)
..++..+.+.+...+++..|....
T Consensus 1099 ~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1099 ALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHH
Confidence 566677777777777776655543
Done!