Query 009977
Match_columns 521
No_of_seqs 715 out of 3038
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 17:09:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.1E-41 7.1E-46 340.4 43.9 445 57-518 82-584 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.6E-38 5.3E-43 319.5 42.8 430 69-518 63-550 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.1E-30 7.1E-35 245.7 46.8 377 106-498 10-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.7E-30 9.1E-35 245.0 46.7 382 65-463 5-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.5E-29 5.1E-34 243.3 24.9 184 277-460 29-221 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.2E-29 4.3E-34 243.9 23.9 207 291-497 7-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 1.6E-26 5.4E-31 227.7 37.4 409 61-484 8-482 (514)
8 3fp2_A TPR repeat-containing p 100.0 5.6E-26 1.9E-30 225.0 36.0 404 59-478 25-491 (537)
9 2y4t_A DNAJ homolog subfamily 100.0 7.3E-25 2.5E-29 212.0 40.1 312 59-408 26-358 (450)
10 2y4t_A DNAJ homolog subfamily 100.0 1.5E-24 5.2E-29 209.7 39.1 329 113-456 10-370 (450)
11 2gw1_A Mitochondrial precursor 99.9 4.1E-23 1.4E-27 203.3 34.6 382 57-451 37-484 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 4.8E-22 1.6E-26 185.9 36.6 319 165-496 2-352 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 5.3E-21 1.8E-25 178.7 41.5 317 130-458 3-349 (359)
14 3fp2_A TPR repeat-containing p 99.9 5.4E-22 1.8E-26 196.4 34.0 404 95-517 25-495 (537)
15 2xm6_A Protein corresponding t 99.9 3.3E-19 1.1E-23 173.8 50.3 364 78-479 26-433 (490)
16 2ooe_A Cleavage stimulation fa 99.9 1.6E-19 5.4E-24 177.9 46.1 414 92-516 10-495 (530)
17 2xm6_A Protein corresponding t 99.9 2.3E-18 7.8E-23 167.9 51.2 364 114-514 26-433 (490)
18 3hym_B Cell division cycle pro 99.9 1.1E-20 3.7E-25 174.5 30.9 246 205-459 59-314 (330)
19 3hym_B Cell division cycle pro 99.9 2.2E-20 7.7E-25 172.4 32.3 295 198-501 18-322 (330)
20 1fch_A Peroxisomal targeting s 99.9 9.4E-21 3.2E-25 177.9 26.4 309 177-512 36-358 (368)
21 1fch_A Peroxisomal targeting s 99.9 1.4E-20 4.7E-25 176.8 26.1 326 109-475 15-356 (368)
22 2ooe_A Cleavage stimulation fa 99.9 3.8E-18 1.3E-22 168.1 44.0 409 58-478 12-492 (530)
23 4g1t_A Interferon-induced prot 99.9 1.2E-18 4.1E-23 169.4 37.7 391 92-518 48-464 (472)
24 1xi4_A Clathrin heavy chain; a 99.9 1.5E-17 5.1E-22 169.8 43.1 378 63-505 989-1376(1630)
25 4eqf_A PEX5-related protein; a 99.9 1E-19 3.5E-24 170.6 25.1 261 203-472 66-350 (365)
26 4eqf_A PEX5-related protein; a 99.9 1.9E-19 6.4E-24 168.8 24.8 277 58-368 64-351 (365)
27 3cv0_A Peroxisome targeting si 99.8 1.4E-18 4.7E-23 160.1 28.6 280 204-513 23-315 (327)
28 4g1t_A Interferon-induced prot 99.8 6.7E-18 2.3E-22 164.1 34.3 385 58-479 50-460 (472)
29 3cv0_A Peroxisome targeting si 99.8 3.4E-19 1.2E-23 164.2 23.7 250 238-516 21-272 (327)
30 1b89_A Protein (clathrin heavy 99.8 7.7E-19 2.6E-23 161.0 22.4 380 69-507 13-411 (449)
31 3mkr_A Coatomer subunit epsilo 99.8 1E-17 3.5E-22 150.6 28.4 71 358-430 180-250 (291)
32 3mkr_A Coatomer subunit epsilo 99.8 1.1E-17 3.7E-22 150.4 28.4 222 135-373 39-264 (291)
33 1xi4_A Clathrin heavy chain; a 99.8 3.2E-15 1.1E-19 152.9 44.1 315 65-434 1055-1375(1630)
34 1b89_A Protein (clathrin heavy 99.8 1.2E-17 3.9E-22 153.2 22.9 283 107-436 15-304 (449)
35 3e4b_A ALGK; tetratricopeptide 99.8 9.2E-17 3.2E-21 154.0 24.7 376 101-514 9-422 (452)
36 2pl2_A Hypothetical conserved 99.8 1.1E-16 3.8E-21 137.4 21.7 196 200-403 3-209 (217)
37 2pl2_A Hypothetical conserved 99.8 2.4E-16 8.3E-21 135.3 22.8 200 306-511 2-212 (217)
38 3uq3_A Heat shock protein STI1 99.8 3.2E-16 1.1E-20 138.9 24.2 226 237-477 4-235 (258)
39 3e4b_A ALGK; tetratricopeptide 99.7 2E-16 6.9E-21 151.7 23.6 379 64-477 8-420 (452)
40 4e6h_A MRNA 3'-END-processing 99.7 2.9E-13 1E-17 134.0 45.5 436 76-518 49-575 (679)
41 3u4t_A TPR repeat-containing p 99.7 2E-15 6.9E-20 134.9 25.9 233 280-517 9-254 (272)
42 3uq3_A Heat shock protein STI1 99.7 2.2E-15 7.5E-20 133.4 26.0 226 202-442 5-235 (258)
43 2h6f_A Protein farnesyltransfe 99.7 1.7E-15 5.8E-20 140.7 25.8 228 204-440 99-344 (382)
44 1ouv_A Conserved hypothetical 99.7 2.1E-14 7.2E-19 128.3 31.7 225 236-479 4-252 (273)
45 3u4t_A TPR repeat-containing p 99.7 2.1E-15 7.1E-20 134.8 25.1 233 204-442 5-249 (272)
46 2h6f_A Protein farnesyltransfe 99.7 3.3E-15 1.1E-19 138.7 25.6 250 237-496 96-365 (382)
47 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.5E-15 5.2E-20 135.9 21.6 220 215-441 18-242 (275)
48 1ouv_A Conserved hypothetical 99.7 7.2E-14 2.5E-18 124.8 31.8 224 201-444 5-252 (273)
49 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.2E-15 4.1E-20 136.5 19.3 246 180-437 19-269 (275)
50 2ho1_A Type 4 fimbrial biogene 99.7 3E-14 1E-18 125.6 27.5 96 203-302 38-133 (252)
51 2ho1_A Type 4 fimbrial biogene 99.7 2.7E-14 9.2E-19 125.9 27.1 198 98-303 40-238 (252)
52 2q7f_A YRRB protein; TPR, prot 99.7 3.7E-15 1.3E-19 130.7 21.0 200 202-408 23-222 (243)
53 2vq2_A PILW, putative fimbrial 99.7 4.7E-14 1.6E-18 121.9 26.7 201 202-407 8-210 (225)
54 2q7f_A YRRB protein; TPR, prot 99.7 4.8E-15 1.6E-19 129.9 20.4 200 59-267 23-222 (243)
55 2vq2_A PILW, putative fimbrial 99.7 2.8E-14 9.6E-19 123.3 25.1 203 94-303 7-211 (225)
56 3spa_A Mtrpol, DNA-directed RN 99.7 9.5E-17 3.2E-21 159.1 10.4 119 308-426 126-248 (1134)
57 3spa_A Mtrpol, DNA-directed RN 99.7 1E-16 3.5E-21 158.9 10.5 117 238-354 127-246 (1134)
58 3sf4_A G-protein-signaling mod 99.7 5.1E-15 1.7E-19 140.6 22.0 300 201-500 8-363 (406)
59 3sf4_A G-protein-signaling mod 99.7 4.9E-15 1.7E-19 140.7 21.2 205 96-301 10-254 (406)
60 4a1s_A PINS, partner of inscut 99.7 5.1E-15 1.7E-19 140.9 19.2 274 202-477 48-371 (411)
61 4a1s_A PINS, partner of inscut 99.7 9.2E-15 3.2E-19 139.2 20.9 275 167-443 49-372 (411)
62 4e6h_A MRNA 3'-END-processing 99.6 6.1E-12 2.1E-16 124.7 40.4 427 57-494 64-584 (679)
63 3ro2_A PINS homolog, G-protein 99.6 1.1E-14 3.8E-19 134.3 19.7 278 62-373 8-332 (338)
64 2ond_A Cleavage stimulation fa 99.6 5.3E-13 1.8E-17 121.3 29.3 217 255-477 33-269 (308)
65 3ro2_A PINS homolog, G-protein 99.6 3.1E-14 1.1E-18 131.3 20.9 278 205-513 8-332 (338)
66 3ulq_A Response regulator aspa 99.6 9.2E-14 3.1E-18 130.8 22.6 164 244-407 109-292 (383)
67 3vtx_A MAMA; tetratricopeptide 99.6 1.4E-13 4.8E-18 114.8 21.3 168 344-516 5-173 (184)
68 3ulq_A Response regulator aspa 99.6 1.7E-13 5.9E-18 128.9 23.9 233 207-442 108-367 (383)
69 3vtx_A MAMA; tetratricopeptide 99.6 5.9E-13 2E-17 111.0 23.0 167 201-373 4-170 (184)
70 2ond_A Cleavage stimulation fa 99.6 3.5E-12 1.2E-16 115.9 29.8 219 219-443 33-270 (308)
71 4abn_A Tetratricopeptide repea 99.6 1.7E-13 5.8E-18 132.2 21.3 213 182-403 84-316 (474)
72 4abn_A Tetratricopeptide repea 99.6 1.2E-13 4.2E-18 133.2 19.2 209 112-331 85-314 (474)
73 3nf1_A KLC 1, kinesin light ch 99.6 6E-14 2E-18 127.9 15.2 170 202-372 27-223 (311)
74 3q15_A PSP28, response regulat 99.5 7E-12 2.4E-16 117.6 29.1 163 174-337 109-289 (378)
75 1hz4_A MALT regulatory protein 99.5 3.4E-12 1.2E-16 119.6 26.8 268 173-441 21-320 (373)
76 3nf1_A KLC 1, kinesin light ch 99.5 3.7E-14 1.3E-18 129.3 13.0 178 59-266 27-223 (311)
77 3q15_A PSP28, response regulat 99.5 4.4E-12 1.5E-16 119.0 27.1 165 206-371 105-288 (378)
78 1hz4_A MALT regulatory protein 99.5 1.9E-11 6.5E-16 114.5 27.1 62 204-265 137-201 (373)
79 4gyw_A UDP-N-acetylglucosamine 99.5 5.3E-12 1.8E-16 126.6 21.2 165 201-372 8-173 (723)
80 4gyw_A UDP-N-acetylglucosamine 99.5 3.9E-12 1.3E-16 127.6 20.1 162 309-476 9-172 (723)
81 3as5_A MAMA; tetratricopeptide 99.4 9.3E-12 3.2E-16 103.6 19.4 169 345-517 9-177 (186)
82 4i17_A Hypothetical protein; T 99.4 1.6E-11 5.5E-16 106.2 20.6 200 307-518 5-214 (228)
83 3as5_A MAMA; tetratricopeptide 99.4 2.5E-11 8.5E-16 101.0 21.0 22 135-156 13-34 (186)
84 4i17_A Hypothetical protein; T 99.4 4.3E-11 1.5E-15 103.5 22.5 131 203-337 8-145 (228)
85 1qqe_A Vesicular transport pro 99.4 5.6E-11 1.9E-15 106.9 19.2 159 283-441 46-226 (292)
86 3edt_B KLC 2, kinesin light ch 99.3 2.2E-11 7.6E-16 109.0 16.2 166 71-266 13-197 (283)
87 3edt_B KLC 2, kinesin light ch 99.3 3.5E-11 1.2E-15 107.6 17.4 29 414-442 252-280 (283)
88 3qky_A Outer membrane assembly 99.3 3.1E-10 1E-14 100.3 21.4 102 202-303 15-126 (261)
89 1qqe_A Vesicular transport pro 99.3 1.4E-10 4.8E-15 104.3 19.2 200 103-336 45-267 (292)
90 2uy1_A Cleavage stimulation fa 99.3 2.1E-08 7.3E-13 96.5 33.3 204 291-512 196-412 (493)
91 3qky_A Outer membrane assembly 99.3 1.1E-09 3.6E-14 96.8 21.9 62 206-267 152-224 (261)
92 3mv2_B Coatomer subunit epsilo 99.2 6E-09 2E-13 91.7 25.0 59 243-301 105-163 (310)
93 3urz_A Uncharacterized protein 99.2 5.1E-10 1.7E-14 95.0 17.9 75 244-321 60-134 (208)
94 3mv2_B Coatomer subunit epsilo 99.2 1.9E-08 6.4E-13 88.5 27.9 179 293-478 85-282 (310)
95 3dra_A Protein farnesyltransfe 99.2 1.5E-08 5E-13 90.2 26.8 216 219-441 50-285 (306)
96 3urz_A Uncharacterized protein 99.2 1E-09 3.5E-14 93.1 18.6 74 315-390 60-133 (208)
97 2fo7_A Synthetic consensus TPR 99.2 1.1E-09 3.8E-14 85.4 17.5 127 205-336 4-130 (136)
98 2fo7_A Synthetic consensus TPR 99.2 1.1E-09 3.8E-14 85.4 17.4 133 381-516 3-135 (136)
99 2yhc_A BAMD, UPF0169 lipoprote 99.2 2.3E-09 7.9E-14 92.2 20.5 191 308-519 3-219 (225)
100 2pzi_A Probable serine/threoni 99.2 2.5E-10 8.6E-15 115.2 15.8 174 213-394 402-583 (681)
101 2uy1_A Cleavage stimulation fa 99.2 3.8E-08 1.3E-12 94.8 29.8 358 73-477 28-412 (493)
102 3dra_A Protein farnesyltransfe 99.2 3.6E-08 1.2E-12 87.7 27.4 233 180-421 47-300 (306)
103 2pzi_A Probable serine/threoni 99.2 3E-10 1E-14 114.6 15.4 169 320-496 402-580 (681)
104 2yhc_A BAMD, UPF0169 lipoprote 99.2 6.9E-09 2.4E-13 89.2 21.9 62 349-410 152-215 (225)
105 3qou_A Protein YBBN; thioredox 99.2 1.7E-09 5.9E-14 96.7 18.5 165 94-264 116-281 (287)
106 2r5s_A Uncharacterized protein 99.2 1.3E-09 4.6E-14 89.6 16.4 161 99-265 10-171 (176)
107 4ga2_A E3 SUMO-protein ligase 99.2 4.8E-10 1.7E-14 89.4 12.8 144 137-288 4-148 (150)
108 4ga2_A E3 SUMO-protein ligase 99.1 2.2E-10 7.6E-15 91.4 10.4 141 175-323 6-148 (150)
109 2r5s_A Uncharacterized protein 99.1 8.6E-10 2.9E-14 90.8 14.3 163 132-301 8-171 (176)
110 3qou_A Protein YBBN; thioredox 99.1 1.8E-09 6.1E-14 96.7 17.1 163 130-299 117-280 (287)
111 3rjv_A Putative SEL1 repeat pr 99.1 1.8E-08 6.1E-13 85.6 22.3 140 293-442 5-157 (212)
112 2vsy_A XCC0866; transferase, g 99.1 1.7E-09 5.9E-14 107.2 17.9 153 322-479 2-158 (568)
113 3rjv_A Putative SEL1 repeat pr 99.1 8.4E-09 2.9E-13 87.6 19.3 176 256-444 4-198 (212)
114 2vsy_A XCC0866; transferase, g 99.1 6.3E-09 2.2E-13 103.1 19.4 154 108-268 2-158 (568)
115 2ifu_A Gamma-SNAP; membrane fu 99.0 1.5E-08 5.2E-13 91.7 18.5 165 143-336 4-182 (307)
116 2ifu_A Gamma-SNAP; membrane fu 99.0 5.1E-09 1.7E-13 94.8 14.6 229 72-331 4-254 (307)
117 3q7a_A Farnesyltransferase alp 99.0 4.4E-07 1.5E-11 81.6 25.4 80 183-266 71-153 (349)
118 3u3w_A Transcriptional activat 99.0 1.5E-07 5E-12 84.6 22.5 163 173-335 82-263 (293)
119 3q7a_A Farnesyltransferase alp 98.9 7.3E-07 2.5E-11 80.1 25.7 166 219-391 71-254 (349)
120 4gco_A Protein STI-1; structur 98.9 3.2E-08 1.1E-12 75.9 14.8 98 203-304 14-111 (126)
121 2c2l_A CHIP, carboxy terminus 98.9 1.6E-08 5.5E-13 90.1 14.4 193 310-513 5-199 (281)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.9 7.3E-08 2.5E-12 81.9 18.1 124 206-337 10-149 (213)
123 2c2l_A CHIP, carboxy terminus 98.9 1.2E-08 4E-13 90.9 13.3 195 201-407 3-198 (281)
124 2qfc_A PLCR protein; TPR, HTH, 98.9 1.4E-07 4.7E-12 84.7 20.3 164 172-335 81-263 (293)
125 3u3w_A Transcriptional activat 98.9 1E-07 3.4E-12 85.6 18.8 162 245-406 82-264 (293)
126 1a17_A Serine/threonine protei 98.9 8.1E-08 2.8E-12 77.8 16.4 127 204-335 15-143 (166)
127 4f3v_A ESX-1 secretion system 98.9 1.9E-07 6.3E-12 81.1 19.0 190 71-267 18-237 (282)
128 1hh8_A P67PHOX, NCF-2, neutrop 98.9 2.4E-07 8.1E-12 78.7 19.6 125 172-303 12-150 (213)
129 4f3v_A ESX-1 secretion system 98.9 7.9E-08 2.7E-12 83.4 16.1 129 385-516 108-240 (282)
130 4gco_A Protein STI-1; structur 98.9 9.3E-08 3.2E-12 73.3 14.8 98 238-338 13-110 (126)
131 2lni_A Stress-induced-phosphop 98.9 9.1E-08 3.1E-12 74.2 15.0 117 201-322 15-131 (133)
132 3gyz_A Chaperone protein IPGC; 98.8 3.6E-08 1.2E-12 78.0 12.2 96 204-303 38-133 (151)
133 1na0_A Designed protein CTPR3; 98.8 1.4E-07 4.9E-12 72.0 15.4 98 202-303 9-106 (125)
134 2qfc_A PLCR protein; TPR, HTH, 98.8 1.7E-07 5.9E-12 84.1 18.1 171 132-302 77-265 (293)
135 1a17_A Serine/threonine protei 98.8 1.2E-07 4.1E-12 76.8 15.4 128 168-301 15-144 (166)
136 3dss_A Geranylgeranyl transfer 98.8 1.6E-06 5.6E-11 77.5 23.7 169 248-422 39-235 (331)
137 2vgx_A Chaperone SYCD; alterna 98.8 1.6E-08 5.5E-13 80.2 9.3 110 365-478 8-118 (148)
138 2vyi_A SGTA protein; chaperone 98.8 1.3E-07 4.4E-12 73.0 14.5 118 202-324 12-129 (131)
139 3dss_A Geranylgeranyl transfer 98.8 7.7E-06 2.6E-10 73.2 26.9 149 255-408 91-267 (331)
140 3gyz_A Chaperone protein IPGC; 98.8 6.4E-08 2.2E-12 76.6 12.1 98 237-337 35-132 (151)
141 3gw4_A Uncharacterized protein 98.8 8.4E-08 2.9E-12 80.7 13.5 157 320-477 3-175 (203)
142 2e2e_A Formate-dependent nitri 98.8 4.1E-08 1.4E-12 80.7 11.1 118 215-337 23-143 (177)
143 2vgx_A Chaperone SYCD; alterna 98.8 5E-08 1.7E-12 77.3 10.7 98 202-303 21-118 (148)
144 3gw4_A Uncharacterized protein 98.8 1.7E-07 5.8E-12 78.8 14.6 156 178-335 4-173 (203)
145 1p5q_A FKBP52, FK506-binding p 98.7 2.6E-07 8.8E-12 84.5 16.0 131 202-335 147-291 (336)
146 1p5q_A FKBP52, FK506-binding p 98.7 2.4E-07 8.2E-12 84.7 15.6 122 344-468 147-283 (336)
147 2lni_A Stress-induced-phosphop 98.7 4E-07 1.4E-11 70.4 14.8 120 163-288 13-132 (133)
148 1na0_A Designed protein CTPR3; 98.7 5.8E-07 2E-11 68.5 15.2 113 167-285 10-122 (125)
149 2e2e_A Formate-dependent nitri 98.7 2E-07 6.9E-12 76.5 13.1 121 178-304 22-145 (177)
150 2vyi_A SGTA protein; chaperone 98.7 5.3E-07 1.8E-11 69.4 14.5 117 167-289 13-129 (131)
151 2xcb_A PCRH, regulatory protei 98.7 3.4E-07 1.1E-11 72.0 13.3 98 202-303 18-115 (142)
152 1elw_A TPR1-domain of HOP; HOP 98.7 9.7E-07 3.3E-11 66.4 15.3 96 204-303 6-101 (118)
153 4gcn_A Protein STI-1; structur 98.7 4.7E-07 1.6E-11 69.5 13.3 97 204-302 10-111 (127)
154 2fbn_A 70 kDa peptidylprolyl i 98.6 4.9E-08 1.7E-12 81.9 7.6 87 203-293 89-175 (198)
155 1hxi_A PEX5, peroxisome target 98.6 2.5E-07 8.7E-12 70.3 10.9 100 417-519 20-120 (121)
156 3upv_A Heat shock protein STI1 98.6 1E-06 3.6E-11 67.5 14.5 95 204-302 6-100 (126)
157 3sz7_A HSC70 cochaperone (SGT) 98.6 9.2E-07 3.2E-11 71.4 14.7 99 201-303 10-108 (164)
158 4gcn_A Protein STI-1; structur 98.6 4.3E-07 1.5E-11 69.7 11.8 95 382-477 11-111 (127)
159 2xcb_A PCRH, regulatory protei 98.6 4.2E-07 1.4E-11 71.5 12.1 98 167-268 19-116 (142)
160 3sz7_A HSC70 cochaperone (SGT) 98.6 7.4E-07 2.5E-11 72.0 13.8 106 164-273 9-114 (164)
161 3upv_A Heat shock protein STI1 98.6 1.5E-06 5.3E-11 66.5 14.5 97 238-337 4-100 (126)
162 4b4t_Q 26S proteasome regulato 98.6 1E-06 3.6E-11 83.9 16.3 204 66-301 11-243 (434)
163 4b4t_Q 26S proteasome regulato 98.6 2E-06 7E-11 81.9 18.2 200 102-337 11-244 (434)
164 3q49_B STIP1 homology and U bo 98.6 1E-06 3.5E-11 68.6 13.4 99 201-303 8-106 (137)
165 2kck_A TPR repeat; tetratricop 98.6 8.8E-07 3E-11 66.0 12.2 104 413-518 5-111 (112)
166 2fbn_A 70 kDa peptidylprolyl i 98.6 1E-06 3.4E-11 73.8 13.4 123 204-329 40-176 (198)
167 1elw_A TPR1-domain of HOP; HOP 98.6 3.9E-06 1.3E-10 63.0 15.3 109 167-281 5-113 (118)
168 2dba_A Smooth muscle cell asso 98.5 3.2E-06 1.1E-10 66.6 15.2 98 202-303 28-128 (148)
169 2kck_A TPR repeat; tetratricop 98.5 1E-06 3.5E-11 65.6 11.5 96 204-303 8-106 (112)
170 1elr_A TPR2A-domain of HOP; HO 98.5 9.8E-07 3.3E-11 67.9 10.8 98 204-303 6-108 (131)
171 3q49_B STIP1 homology and U bo 98.5 4.1E-06 1.4E-10 65.1 13.9 99 236-337 7-105 (137)
172 1hxi_A PEX5, peroxisome target 98.5 1.7E-06 5.7E-11 65.7 11.3 91 208-302 23-113 (121)
173 2dba_A Smooth muscle cell asso 98.5 8.9E-06 3E-10 64.0 16.1 111 164-281 26-140 (148)
174 1elr_A TPR2A-domain of HOP; HO 98.5 2E-06 7E-11 66.0 11.5 97 238-337 4-107 (131)
175 3ro3_A PINS homolog, G-protein 98.4 2E-06 6.7E-11 69.0 10.9 133 381-513 11-158 (164)
176 2xev_A YBGF; tetratricopeptide 98.4 1.2E-05 4E-10 61.7 14.7 92 208-303 8-105 (129)
177 2hr2_A Hypothetical protein; a 98.4 2.2E-06 7.5E-11 67.0 10.2 68 451-518 59-136 (159)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 5.3E-06 1.8E-10 79.4 15.0 125 202-329 268-405 (457)
179 2xev_A YBGF; tetratricopeptide 98.4 4.3E-06 1.5E-10 64.1 11.6 94 382-478 5-105 (129)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 4.6E-06 1.6E-10 79.8 13.8 150 322-476 247-413 (457)
181 1wao_1 Serine/threonine protei 98.4 1.7E-06 5.8E-11 83.1 10.5 121 208-333 12-134 (477)
182 3ro3_A PINS homolog, G-protein 98.3 4.5E-06 1.5E-10 66.9 11.5 138 97-266 11-157 (164)
183 1ihg_A Cyclophilin 40; ppiase 98.3 5.6E-06 1.9E-10 76.6 13.4 120 204-328 225-360 (370)
184 3k9i_A BH0479 protein; putativ 98.3 1.2E-06 4.2E-11 66.0 7.4 88 179-268 3-91 (117)
185 3rkv_A Putative peptidylprolyl 98.3 4.6E-06 1.6E-10 67.1 11.0 64 238-303 63-126 (162)
186 3k9i_A BH0479 protein; putativ 98.3 5.8E-07 2E-11 67.9 5.3 86 391-478 2-90 (117)
187 3rkv_A Putative peptidylprolyl 98.3 4.4E-06 1.5E-10 67.2 10.5 103 378-484 10-130 (162)
188 1ihg_A Cyclophilin 40; ppiase 98.3 1.2E-05 4.3E-10 74.2 14.7 139 344-505 223-362 (370)
189 1dce_A Protein (RAB geranylger 98.3 6.2E-05 2.1E-09 73.6 19.5 156 358-518 43-226 (567)
190 1wao_1 Serine/threonine protei 98.2 4.2E-06 1.4E-10 80.4 10.5 118 175-298 15-134 (477)
191 1dce_A Protein (RAB geranylger 98.2 0.00011 3.6E-09 72.0 20.4 171 219-396 46-243 (567)
192 2if4_A ATFKBP42; FKBP-like, al 98.2 2.7E-06 9.3E-11 77.8 8.1 152 344-518 179-333 (338)
193 2hr2_A Hypothetical protein; a 98.2 2.8E-05 9.7E-10 60.8 12.5 97 204-302 13-130 (159)
194 2if4_A ATFKBP42; FKBP-like, al 98.2 7.2E-06 2.5E-10 74.9 10.1 146 204-373 181-328 (338)
195 3n71_A Histone lysine methyltr 98.1 3.1E-05 1.1E-09 73.9 12.3 125 389-513 319-464 (490)
196 2kat_A Uncharacterized protein 98.0 1.9E-05 6.4E-10 59.1 8.3 79 77-158 3-81 (115)
197 3n71_A Histone lysine methyltr 98.0 5.9E-05 2E-09 72.0 13.5 99 204-302 353-463 (490)
198 1klx_A Cysteine rich protein B 98.0 0.00016 5.4E-09 56.1 13.4 7 257-263 44-50 (138)
199 2kat_A Uncharacterized protein 98.0 4.3E-05 1.5E-09 57.1 9.7 79 185-267 4-82 (115)
200 3ma5_A Tetratricopeptide repea 98.0 2.6E-05 8.8E-10 56.6 7.7 66 200-267 5-70 (100)
201 1klx_A Cysteine rich protein B 98.0 0.00038 1.3E-08 53.9 14.8 88 315-408 31-126 (138)
202 1na3_A Designed protein CTPR2; 98.0 0.00012 4E-09 51.8 10.9 80 202-285 9-88 (91)
203 2l6j_A TPR repeat-containing p 97.9 4.6E-05 1.6E-09 56.4 8.8 64 202-267 4-67 (111)
204 1zu2_A Mitochondrial import re 97.9 5.1E-05 1.8E-09 59.2 7.9 85 215-303 15-120 (158)
205 1na3_A Designed protein CTPR2; 97.9 0.0002 6.9E-09 50.5 10.7 82 237-321 8-89 (91)
206 3ma5_A Tetratricopeptide repea 97.8 5.2E-05 1.8E-09 55.0 7.5 66 92-158 4-69 (100)
207 2l6j_A TPR repeat-containing p 97.8 6.1E-05 2.1E-09 55.7 8.1 66 237-304 3-68 (111)
208 1zu2_A Mitochondrial import re 97.8 4.8E-05 1.7E-09 59.3 6.8 91 358-452 16-127 (158)
209 3ly7_A Transcriptional activat 97.5 0.0019 6.6E-08 58.0 13.7 143 341-488 191-347 (372)
210 2kc7_A BFR218_protein; tetratr 97.4 0.00046 1.6E-08 49.6 7.2 86 421-518 7-95 (99)
211 3bee_A Putative YFRE protein; 97.4 0.0046 1.6E-07 43.6 11.7 67 200-268 4-73 (93)
212 3ly7_A Transcriptional activat 97.3 0.015 5.1E-07 52.3 17.3 64 308-373 276-339 (372)
213 1pc2_A Mitochondria fission pr 97.3 0.00085 2.9E-08 51.7 7.8 82 395-478 14-100 (152)
214 3qww_A SET and MYND domain-con 97.3 0.0013 4.6E-08 61.5 10.8 61 451-511 342-409 (433)
215 3qww_A SET and MYND domain-con 97.2 0.0016 5.4E-08 61.0 10.2 88 179-266 311-410 (433)
216 3qwp_A SET and MYND domain-con 97.2 0.0035 1.2E-07 58.8 12.3 92 386-477 294-399 (429)
217 3bee_A Putative YFRE protein; 97.2 0.0068 2.3E-07 42.7 10.8 67 92-159 3-72 (93)
218 3mkq_A Coatomer beta'-subunit; 97.1 0.02 6.8E-07 59.1 18.8 154 138-334 607-761 (814)
219 2kc7_A BFR218_protein; tetratr 97.1 0.0036 1.2E-07 44.8 9.5 58 209-268 7-65 (99)
220 3qwp_A SET and MYND domain-con 97.0 0.0049 1.7E-07 57.8 11.0 94 173-266 294-399 (429)
221 3mkq_B Coatomer subunit alpha; 96.9 0.11 3.7E-06 41.1 16.7 102 211-335 14-115 (177)
222 3mkq_A Coatomer beta'-subunit; 96.8 0.019 6.5E-07 59.3 14.7 97 107-229 611-708 (814)
223 3u64_A Protein TP_0956; tetrat 96.8 0.13 4.6E-06 44.3 17.1 65 346-410 201-271 (301)
224 3lvg_A Clathrin heavy chain 1; 96.7 4.5E-07 1.5E-11 82.6 -17.4 165 59-257 54-218 (624)
225 3u64_A Protein TP_0956; tetrat 96.7 0.11 3.9E-06 44.7 16.2 88 254-341 179-272 (301)
226 1nzn_A CGI-135 protein, fissio 96.7 0.0051 1.7E-07 45.5 6.7 81 396-478 18-103 (126)
227 1pc2_A Mitochondria fission pr 96.6 0.031 1.1E-06 43.0 11.0 85 360-447 14-102 (152)
228 2v5f_A Prolyl 4-hydroxylase su 96.6 0.0093 3.2E-07 43.1 7.9 71 412-484 3-79 (104)
229 2v5f_A Prolyl 4-hydroxylase su 96.6 0.034 1.2E-06 40.1 10.9 66 202-267 5-75 (104)
230 4ady_A RPN2, 26S proteasome re 96.5 0.65 2.2E-05 47.4 22.6 125 208-337 496-622 (963)
231 3mkq_B Coatomer subunit alpha; 96.4 0.16 5.4E-06 40.2 13.8 100 140-263 15-114 (177)
232 4ady_A RPN2, 26S proteasome re 96.1 1.5 5.2E-05 44.8 32.3 27 60-86 231-257 (963)
233 4b4t_P 26S proteasome regulato 95.9 1.1 3.8E-05 42.1 20.8 193 73-266 30-246 (445)
234 1y8m_A FIS1; mitochondria, unk 95.9 0.15 5.2E-06 38.3 10.9 67 412-478 37-106 (144)
235 4h7y_A Dual specificity protei 95.8 0.19 6.5E-06 38.2 11.1 53 288-341 74-126 (161)
236 3o48_A Mitochondria fission 1 95.7 0.082 2.8E-06 39.2 8.9 69 410-478 36-107 (134)
237 3lvg_A Clathrin heavy chain 1; 95.7 0.018 6.2E-07 53.2 6.3 378 57-471 81-534 (624)
238 4b4t_P 26S proteasome regulato 95.6 1.4 4.7E-05 41.4 19.1 51 180-230 30-84 (445)
239 1wy6_A Hypothetical protein ST 95.3 0.61 2.1E-05 34.6 18.2 60 453-513 95-154 (172)
240 4h7y_A Dual specificity protei 95.2 0.5 1.7E-05 35.9 11.7 54 323-377 74-127 (161)
241 3txn_A 26S proteasome regulato 95.1 2 6.9E-05 39.3 21.2 169 132-300 21-207 (394)
242 1wy6_A Hypothetical protein ST 94.9 0.83 2.8E-05 34.0 16.7 140 69-233 17-156 (172)
243 4gns_B Protein CSD3, chitin bi 94.9 0.17 5.7E-06 50.6 10.9 52 458-510 346-397 (754)
244 1nzn_A CGI-135 protein, fissio 94.7 0.33 1.1E-05 35.9 9.5 70 447-517 33-107 (126)
245 3ffl_A Anaphase-promoting comp 94.6 0.21 7.2E-06 38.8 8.6 23 243-265 127-149 (167)
246 1qsa_A Protein (soluble lytic 94.4 4.2 0.00014 39.9 36.1 80 131-218 73-152 (618)
247 4gns_B Protein CSD3, chitin bi 93.1 0.69 2.4E-05 46.2 11.4 54 281-335 344-397 (754)
248 2ff4_A Probable regulatory pro 92.5 1.6 5.3E-05 40.2 12.4 57 383-440 175-231 (388)
249 1qsa_A Protein (soluble lytic 92.2 9.5 0.00032 37.4 29.6 116 358-477 228-347 (618)
250 4fhn_B Nucleoporin NUP120; pro 92.0 6.4 0.00022 42.2 17.8 172 100-294 817-991 (1139)
251 3ffl_A Anaphase-promoting comp 91.7 2.8 9.5E-05 32.6 10.7 60 64-123 25-91 (167)
252 2ff4_A Probable regulatory pro 91.6 0.94 3.2E-05 41.7 9.7 57 348-405 175-231 (388)
253 4fhn_B Nucleoporin NUP120; pro 91.1 8.2 0.00028 41.4 17.5 153 168-328 814-990 (1139)
254 1zbp_A Hypothetical protein VP 91.0 0.9 3.1E-05 38.6 8.0 51 105-156 7-57 (273)
255 3lpz_A GET4 (YOR164C homolog); 90.5 8.8 0.0003 34.0 19.9 81 413-512 135-215 (336)
256 1zbp_A Hypothetical protein VP 90.2 2.5 8.6E-05 35.9 9.9 57 67-125 5-61 (273)
257 3o48_A Mitochondria fission 1 89.8 4.8 0.00017 29.9 11.6 64 378-441 39-105 (134)
258 1v54_E Cytochrome C oxidase po 88.2 3.6 0.00012 28.7 7.7 72 421-493 16-88 (109)
259 4b4t_R RPN7, 26S proteasome re 88.2 2.8 9.5E-05 39.2 10.1 99 132-230 133-236 (429)
260 2wpv_A GET4, UPF0363 protein Y 88.1 13 0.00045 32.6 21.8 165 135-336 38-215 (312)
261 1v54_E Cytochrome C oxidase po 87.4 5.8 0.0002 27.7 9.8 76 381-457 10-87 (109)
262 1y8m_A FIS1; mitochondria, unk 87.0 8.2 0.00028 29.1 12.4 65 377-441 37-104 (144)
263 2wpv_A GET4, UPF0363 protein Y 86.5 16 0.00056 32.0 18.3 80 343-441 133-215 (312)
264 3lpz_A GET4 (YOR164C homolog); 85.9 18 0.00062 32.0 20.6 25 343-367 135-159 (336)
265 2y69_E Cytochrome C oxidase su 85.1 9.8 0.00034 28.2 9.8 63 429-492 68-130 (152)
266 4b4t_R RPN7, 26S proteasome re 83.9 9 0.00031 35.7 11.2 61 311-371 133-195 (429)
267 3txn_A 26S proteasome regulato 83.1 27 0.00094 31.8 29.2 295 168-479 21-344 (394)
268 2y69_E Cytochrome C oxidase su 82.4 8.2 0.00028 28.6 7.7 54 464-517 68-121 (152)
269 3esl_A Checkpoint serine/threo 81.9 19 0.00064 29.1 10.8 67 204-272 82-148 (202)
270 2r9g_A AAA ATPase, central reg 79.9 22 0.00074 28.5 10.4 37 426-463 26-62 (204)
271 2uwj_G Type III export protein 77.2 16 0.00054 25.4 7.3 78 394-479 21-98 (115)
272 2p58_C Putative type III secre 77.1 16 0.00055 25.4 8.1 78 394-479 22-99 (116)
273 3pvs_A Replication-associated 76.6 44 0.0015 31.2 13.1 141 324-480 166-326 (447)
274 3ctd_A Putative ATPase, AAA fa 73.1 28 0.00096 28.1 9.0 34 426-459 47-80 (213)
275 3mv2_A Coatomer subunit alpha; 72.8 49 0.0017 29.0 13.2 77 429-520 185-263 (325)
276 3bge_A Predicted ATPase; struc 70.6 30 0.001 27.7 8.6 19 393-411 21-39 (201)
277 4a1g_A Mitotic checkpoint seri 70.2 34 0.0012 26.1 10.4 53 219-272 82-134 (152)
278 3esl_A Checkpoint serine/threo 69.6 43 0.0015 27.0 11.4 54 394-447 94-148 (202)
279 4ets_A Ferric uptake regulatio 69.4 18 0.00061 28.1 7.3 71 75-146 13-85 (162)
280 2uwj_G Type III export protein 68.1 27 0.00094 24.3 8.2 77 359-443 21-97 (115)
281 2p58_C Putative type III secre 67.4 29 0.00098 24.2 8.8 76 359-442 22-97 (116)
282 4aez_C MAD3, mitotic spindle c 64.6 57 0.002 26.8 9.5 53 219-272 131-183 (223)
283 2qx5_A Nucleoporin NIC96; mRNA 63.4 1.2E+02 0.004 30.0 13.1 25 61-85 355-382 (661)
284 2d2s_A Exocyst complex compone 59.4 47 0.0016 27.7 8.4 89 385-476 24-118 (235)
285 2fe3_A Peroxide operon regulat 59.3 41 0.0014 25.4 7.5 58 87-145 14-71 (145)
286 2wvi_A Mitotic checkpoint seri 58.8 62 0.0021 25.1 11.1 54 219-273 77-130 (164)
287 2d2s_A Exocyst complex compone 58.2 39 0.0013 28.2 7.7 26 202-227 91-116 (235)
288 4b4t_S RPN3, 26S proteasome re 55.8 1.4E+02 0.0048 28.3 12.9 25 97-121 233-257 (523)
289 3eyy_A Putative iron uptake re 55.3 43 0.0015 25.3 7.0 59 85-145 9-67 (145)
290 2xig_A Ferric uptake regulatio 54.0 69 0.0024 24.3 8.0 61 85-146 17-77 (150)
291 2ijq_A Hypothetical protein; s 52.6 78 0.0027 24.4 8.0 54 389-442 42-103 (161)
292 4a1g_A Mitotic checkpoint seri 50.1 83 0.0028 24.0 11.0 51 433-483 84-135 (152)
293 4gq2_M Nucleoporin NUP120; bet 47.2 2.7E+02 0.0092 29.1 13.9 109 172-288 816-950 (950)
294 4gq2_M Nucleoporin NUP120; bet 46.1 1.6E+02 0.0054 30.8 11.7 88 385-478 816-926 (950)
295 2keb_A DNA polymerase subunit 43.8 78 0.0027 21.9 6.7 56 433-490 28-88 (101)
296 2f6m_A Suppressor protein STP2 43.6 58 0.002 20.5 4.8 48 452-500 5-52 (65)
297 3kae_A CDC27, possible protein 43.4 1.2E+02 0.004 23.8 13.7 36 481-516 203-240 (242)
298 3ltm_A Alpha-REP4; protein eng 43.4 1.2E+02 0.0043 24.1 20.3 111 93-217 31-141 (211)
299 2wvi_A Mitotic checkpoint seri 43.2 1.1E+02 0.0039 23.6 10.9 52 433-484 79-131 (164)
300 2nsz_A Programmed cell death p 41.5 1E+02 0.0035 22.6 8.3 22 349-370 12-33 (129)
301 1mzb_A Ferric uptake regulatio 41.2 86 0.003 23.2 6.7 58 87-145 10-68 (136)
302 2o03_A Probable zinc uptake re 40.8 55 0.0019 24.1 5.5 46 100-145 15-60 (131)
303 3ltm_A Alpha-REP4; protein eng 39.8 1.4E+02 0.0049 23.7 19.8 152 129-301 32-183 (211)
304 4ets_A Ferric uptake regulatio 38.2 69 0.0024 24.7 5.8 26 278-303 36-61 (162)
305 2ion_A PDCD4, programmed cell 38.0 1.3E+02 0.0045 22.9 8.4 68 381-449 11-80 (152)
306 3ltj_A Alpharep-4; protein eng 36.6 1.6E+02 0.0053 23.3 19.9 17 94-110 27-43 (201)
307 2w57_A Ferric uptake regulatio 35.6 96 0.0033 23.5 6.2 59 87-146 9-68 (150)
308 3mwm_A ZUR, putative metal upt 35.3 57 0.0019 24.4 4.8 47 99-145 17-63 (139)
309 2ijq_A Hypothetical protein; s 35.0 1.5E+02 0.0053 22.8 8.0 51 426-476 44-102 (161)
310 3eiq_C Programmed cell death p 34.5 2.5E+02 0.0086 25.1 14.0 25 241-265 57-81 (358)
311 2fu4_A Ferric uptake regulatio 33.5 1E+02 0.0034 20.2 6.1 58 87-145 9-67 (83)
312 4aez_C MAD3, mitotic spindle c 33.3 2E+02 0.0069 23.6 8.9 47 328-374 133-180 (223)
313 3eiq_C Programmed cell death p 31.7 2.8E+02 0.0096 24.8 14.7 24 348-371 221-244 (358)
314 2ion_A PDCD4, programmed cell 31.2 1.7E+02 0.0059 22.2 9.3 66 345-411 10-77 (152)
315 4b4t_S RPN3, 26S proteasome re 30.8 3.5E+02 0.012 25.7 12.6 19 103-121 144-162 (523)
316 1oai_A Nuclear RNA export fact 30.6 36 0.0012 21.0 2.4 24 251-274 33-56 (59)
317 3l6a_A Eukaryotic translation 30.4 2.9E+02 0.01 24.7 9.4 27 204-230 14-40 (364)
318 3mkr_B Coatomer subunit alpha; 29.8 2.8E+02 0.0097 24.2 13.4 74 432-520 179-254 (320)
319 2cwy_A Hypothetical protein TT 28.4 1.2E+02 0.0041 20.8 5.0 51 390-442 12-67 (94)
320 1bpo_A Protein (clathrin); cla 28.4 3.7E+02 0.013 25.1 14.6 120 64-190 333-453 (494)
321 3ltj_A Alpharep-4; protein eng 27.9 2.2E+02 0.0075 22.3 19.5 80 200-289 88-167 (201)
322 2cos_A Serine/threonine protei 27.5 53 0.0018 19.6 2.6 19 493-511 29-49 (54)
323 2fe3_A Peroxide operon regulat 27.4 1.8E+02 0.006 21.8 6.4 10 292-301 39-48 (145)
324 1oyz_A Hypothetical protein YI 26.7 2.8E+02 0.0097 23.2 22.5 9 468-476 253-261 (280)
325 1oyz_A Hypothetical protein YI 26.5 2.9E+02 0.0097 23.2 20.2 177 94-290 36-222 (280)
326 2crb_A Nuclear receptor bindin 25.8 1.2E+02 0.0041 20.7 4.3 22 453-474 19-40 (97)
327 2f6m_A Suppressor protein STP2 25.6 93 0.0032 19.6 3.6 44 98-142 5-48 (65)
328 2nsz_A Programmed cell death p 25.6 2E+02 0.0068 21.1 10.6 69 381-450 9-79 (129)
329 3bqo_A Telomeric repeat-bindin 25.4 58 0.002 26.0 3.3 22 493-514 126-147 (211)
330 1wdy_A 2-5A-dependent ribonucl 25.0 2E+02 0.0068 24.0 7.4 46 426-471 191-238 (285)
331 3eyy_A Putative iron uptake re 24.9 1.6E+02 0.0053 22.1 5.7 10 292-301 35-44 (145)
332 1bpo_A Protein (clathrin); cla 24.7 4.3E+02 0.015 24.7 14.2 47 108-157 342-388 (494)
333 3jxi_A Vanilloid receptor-rela 24.0 1.3E+02 0.0043 25.0 5.7 25 284-308 12-36 (260)
334 1wdy_A 2-5A-dependent ribonucl 23.3 1.5E+02 0.0053 24.7 6.3 48 460-507 190-239 (285)
335 2zu6_B Programmed cell death p 23.3 3.7E+02 0.013 23.4 11.4 68 382-450 169-238 (307)
336 1mzb_A Ferric uptake regulatio 22.6 2.3E+02 0.008 20.8 6.4 61 404-465 8-69 (136)
337 2r9g_A AAA ATPase, central reg 22.4 3E+02 0.01 22.1 10.3 22 286-308 26-47 (204)
338 2b7e_A PRE-mRNA processing pro 22.0 65 0.0022 19.8 2.4 29 255-284 3-31 (59)
339 3l6a_A Eukaryotic translation 22.0 3.2E+02 0.011 24.5 8.0 75 346-421 14-90 (364)
340 2p22_A Suppressor protein STP2 21.3 1.4E+02 0.0048 23.3 4.7 54 448-502 110-163 (174)
341 3pvs_A Replication-associated 20.9 5E+02 0.017 24.0 14.9 38 356-393 267-304 (447)
342 3bu8_A Telomeric repeat-bindin 20.8 3.4E+02 0.012 22.1 9.9 24 208-231 120-143 (235)
343 2keb_A DNA polymerase subunit 20.8 1.8E+02 0.0062 20.1 4.5 33 467-499 27-59 (101)
344 1ug3_A EIF4GI, eukaryotic prot 20.7 3.8E+02 0.013 23.7 8.2 149 169-334 14-166 (339)
345 2w57_A Ferric uptake regulatio 20.0 2.6E+02 0.0089 21.0 6.1 32 362-393 35-66 (150)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-41 Score=340.44 Aligned_cols=445 Identities=12% Similarity=0.034 Sum_probs=390.6
Q ss_pred CCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHH
Q 009977 57 SRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNL 136 (521)
Q Consensus 57 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (521)
+++..|+.++..+.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|..+|+.+... +++..++..+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 45667999999999999999999999999743 578899999999999999999999999998754 6788899999
Q ss_pred HHHHHccCcHHHHHHHHHhhcccc--------------CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcH
Q 009977 137 MKHFSNCSLHERVLEMFHKIHPIT--------------REKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNT 202 (521)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 202 (521)
+.+|.+.|++++|+++|+++.... +...+..++..++.+|.+.|++++|..+|+++.+.. +.+.
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~ 234 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCY 234 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhh
Confidence 999999999999999999653211 113457889999999999999999999999997642 2233
Q ss_pred HHHHHH--------------------------------------HHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009977 203 CIFNIL--------------------------------------IKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTL 244 (521)
Q Consensus 203 ~~~~~l--------------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 244 (521)
..+..+ +..|.+.|++++|.++|+++.+. + ++..+|+.+
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~~l 311 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-E--KSSDLLLCK 311 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-G--GCHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-C--chHHHHHHH
Confidence 343333 55667889999999999998876 2 789999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC
Q 009977 245 IDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGK 324 (521)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 324 (521)
+.+|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..++..++.+|.+.|+
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhcc
Confidence 999999999999999999998764 4567789999999999999999999999999765 6678899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 009977 325 LQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEK 404 (521)
Q Consensus 325 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 404 (521)
+++|.++|+++.+.. ..+..+|+.++.+|.+.|++++|+++|+++.+.+.. +..+|..++.+|.+.|++++|.++|++
T Consensus 389 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 389 ISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998743 235889999999999999999999999999987643 788999999999999999999999999
Q ss_pred HHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 405 LWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCR----GFLPH--YATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
+.+.... +..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..++..++.+|.+.|++++|...++++.+.
T Consensus 467 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 467 SYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9987544 7889999999999999999999999999875 66787 789999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccCc
Q 009977 479 GFKPESDSWALLVELICRGRKLLFAFELLDELVIKESGTI 518 (521)
Q Consensus 479 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 518 (521)
+ +.+..+|..++.+|.+.|++++|.+.|+++++.+|++.
T Consensus 546 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 546 S-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp S-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence 5 45789999999999999999999999999999988763
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-38 Score=319.52 Aligned_cols=430 Identities=11% Similarity=-0.005 Sum_probs=362.2
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHH
Q 009977 69 IKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHER 148 (521)
Q Consensus 69 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 148 (521)
....+....+...|..+. .++...|+.++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++
T Consensus 63 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~ 135 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS-----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYAR 135 (597)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccccCccCCCCCccccch-----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHH
Confidence 344556666666666542 357889999999999999999999999999865 4677889999999999999999
Q ss_pred HHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcC--------------CCCCcHHHHHHHHHHHHh
Q 009977 149 VLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHL--------------RLKPNTCIFNILIKHHCK 214 (521)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~ 214 (521)
|++.|+++.. .+++..++..++.+|.+.|++++|..+|+++.... +.+++..+|+.++.+|.+
T Consensus 136 A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (597)
T 2xpi_A 136 AKCLLTKEDL---YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTN 212 (597)
T ss_dssp HHHHHHHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 9999999853 36788899999999999999999999998543321 224468899999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHH--------------------------------------HHHHHhcCChHH
Q 009977 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTL--------------------------------------IDGLCKNGRFRE 256 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l--------------------------------------~~~~~~~g~~~~ 256 (521)
.|++++|.++|+++.+.++ .+...+..+ +..|.+.|++++
T Consensus 213 ~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 290 (597)
T 2xpi_A 213 LSNFDRAKECYKEALMVDA--KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCc--hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHH
Confidence 9999999999999998876 344444433 445567889999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 257 AIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMK 336 (521)
Q Consensus 257 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 336 (521)
|.++|+++.+. +++..+++.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|..+++++.
T Consensus 291 A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
T 2xpi_A 291 AEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLV 366 (597)
T ss_dssp HHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999764 5889999999999999999999999999999876 5688899999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHH
Q 009977 337 NFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKAS 416 (521)
Q Consensus 337 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 416 (521)
+.. ..+..+|+.++.+|.+.|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|+++.+.+.. +..+
T Consensus 367 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~ 443 (597)
T 2xpi_A 367 DRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLP 443 (597)
T ss_dssp HHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHH
T ss_pred hhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHH
Confidence 643 346889999999999999999999999999987543 6889999999999999999999999999987543 7889
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHH
Q 009977 417 YRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEM----GFKPE--SDSWALL 490 (521)
Q Consensus 417 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l 490 (521)
|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|..+|+++.+. +..|+ ..+|..+
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l 522 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 9999999999999999999999999642 347899999999999999999999999999875 66777 6899999
Q ss_pred HHHHHccCcHHHHHHHHHHHHHcCccCc
Q 009977 491 VELICRGRKLLFAFELLDELVIKESGTI 518 (521)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 518 (521)
+.+|.+.|++++|.+.++++.+.+|.+.
T Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 550 (597)
T 2xpi_A 523 GHAYRKLKMYDAAIDALNQGLLLSTNDA 550 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999999999877653
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.1e-30 Score=245.69 Aligned_cols=377 Identities=16% Similarity=0.096 Sum_probs=218.1
Q ss_pred HhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHH
Q 009977 106 ARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLA 185 (521)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 185 (521)
.+.|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++.... ..+.+..++..+..++...|++++|
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~--~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHHH
Confidence 33444444444444444332 22333333344444444444444444444331 1233334444444444444444444
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009977 186 QNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMV 265 (521)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 265 (521)
...|+++.+. .+.+..+|..++.++.+.|++++|.+.|+++.+..+ .+...+..+...+...|++++|++.|+++.
T Consensus 87 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 87 IEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP--DLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT--TCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4444444331 122344566666666666666666666666666554 344555666666666666666666666666
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 009977 266 SKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTI 345 (521)
Q Consensus 266 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 345 (521)
... +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...++++..... .+..
T Consensus 163 ~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~ 238 (388)
T 1w3b_A 163 ETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAV 238 (388)
T ss_dssp HHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHH
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHH
Confidence 542 3445666666666666666666666666666654 34455666666666666677777666666655321 1356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 009977 346 GYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSC 425 (521)
Q Consensus 346 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (521)
++..+...|...|++++|+..|+++.+.++. +..+|..++..+.+.|++++|...++++.+..+ .+..++..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHH
Confidence 6666666677777777777777776665433 455666677777777777777777777666532 25666667777777
Q ss_pred cCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 009977 426 QKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGR 498 (521)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 498 (521)
..|++++|...++++++. .| +..++..++..+.+.|++++|...++++.+.. +.+...|..+...+...|
T Consensus 317 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 777777777777777642 33 55666677777777777777777777776542 223455666655555444
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.7e-30 Score=244.96 Aligned_cols=382 Identities=14% Similarity=0.051 Sum_probs=333.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccC
Q 009977 65 AISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCS 144 (521)
Q Consensus 65 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 144 (521)
+...+.+.|++++|++.++.+.+.. |.+...+..+...+...|++++|...++...+.. |.+..++..++..|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 4566788999999999999987654 5567788888899999999999999999998875 678889999999999999
Q ss_pred cHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q 009977 145 LHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEV 224 (521)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 224 (521)
++++|++.|+++... .+.+..++..+..++...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.
T Consensus 82 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 82 QLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999998743 3445667999999999999999999999998763 233566888899999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009977 225 LKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (521)
|+++.+..+ .+..+|..++..+...|++++|+..|+++...+ +.+...+..+...+...|++++|...+++..+..
T Consensus 158 ~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 233 (388)
T 1w3b_A 158 YLKAIETQP--NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233 (388)
T ss_dssp HHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999998876 578899999999999999999999999999874 5567889999999999999999999999998875
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHH
Q 009977 305 CNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNI 384 (521)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 384 (521)
+.+..++..++.+|...|++++|.+.|+++.+... .+..+|..+...+.+.|++++|+..|+++.+..+ .+..++..
T Consensus 234 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~ 310 (388)
T 1w3b_A 234 -PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNN 310 (388)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHH
Confidence 55678899999999999999999999999998532 2578899999999999999999999999998754 37889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 009977 385 ILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAG 463 (521)
Q Consensus 385 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 463 (521)
+...+...|++++|...++++.+..+ .+..++..+...+.+.|++++|...|+++++ ..| +...+..+...+...|
T Consensus 311 l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 311 LANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 99999999999999999999988643 3678899999999999999999999999995 456 6777777777766655
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.5e-29 Score=243.34 Aligned_cols=184 Identities=16% Similarity=0.206 Sum_probs=92.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC---------HHHHHHHHHHHHhCCCCCCHHHH
Q 009977 277 YNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGK---------LQEAKEVFDEMKNFLLKPDTIGY 347 (521)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~~~~~~~~~~~~~~ 347 (521)
++.+|++|++.|++++|+++|++|.+.|+.||..+|+.|+.+|++.+. ++.|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 334444444444444444444444444444444444444444433222 34455555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcC
Q 009977 348 TTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQK 427 (521)
Q Consensus 348 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (521)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.|+.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009977 428 GELEKAIELLRLMLCRGFLPHYATSNELLVRLC 460 (521)
Q Consensus 428 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 460 (521)
|+.++|.+++++|.+.|..|+..||+.++..|.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 555555555555555555555555555554444
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.2e-29 Score=243.88 Aligned_cols=207 Identities=17% Similarity=0.169 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------H
Q 009977 291 DRAKKIMEFMKNNGCNPNV-FNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGR---------V 360 (521)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 360 (521)
..+..+.+.+.+.+....+ ..++.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|.+.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777665554 36888999999999999999999999999999999999999999987654 6
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 009977 361 DEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLM 440 (521)
Q Consensus 361 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 440 (521)
++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 009977 441 LCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRG 497 (521)
Q Consensus 441 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 497 (521)
.+.|+.||..+|+.|+.+|++.|++++|.+++++|.+.|..|+..||..++..+...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999988764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.6e-26 Score=227.67 Aligned_cols=409 Identities=10% Similarity=-0.059 Sum_probs=297.8
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHH
Q 009977 61 SHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHF 140 (521)
Q Consensus 61 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (521)
.|......+.+.|++++|+..|++++... |+..+|..++.++.+.|++++|...++++.+.+ |.+..++..++.+|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 45667788999999999999999998764 689999999999999999999999999999886 66778999999999
Q ss_pred HccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh----------------------------
Q 009977 141 SNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYS---------------------------- 192 (521)
Q Consensus 141 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---------------------------- 192 (521)
...|++++|+..|+++.... +++.......+..+........+.+.+..+
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 99999999999999987533 334444444444333322222222222110
Q ss_pred ------hhcCCC---------CCcHHHHHHHHHHHHh---cCChHHHHHHHHHHHh-----C--CCC-----CCCHHHHH
Q 009977 193 ------NQHLRL---------KPNTCIFNILIKHHCK---RGTLESAFEVLKEMKK-----S--QMS-----YPNLITYS 242 (521)
Q Consensus 193 ------~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~--~~~-----~~~~~~~~ 242 (521)
...... +.+...+......+.. .|++++|...|+++.+ . .+. ..+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 000000 1114455555555554 7888888888888877 3 211 02356677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 009977 243 TLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKE 322 (521)
Q Consensus 243 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 322 (521)
.++..+...|++++|+..|+++.... |+...+..++.++...|++++|...++.+.+.. +.+..++..++..+...
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHh
Confidence 78888888888888888888887763 227777888888888888888888888887764 45667788888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 009977 323 GKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGML 402 (521)
Q Consensus 323 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 402 (521)
|++++|...++++.+.... +...+..+...+...|++++|+..++++.+.... +..++..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888888774322 4667777888888888888888888888776433 5667778888888888888888888
Q ss_pred HHHHHCCCc-cC----HHHHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009977 403 EKLWYDGIY-LN----KASYRIVLNFSCQ---KGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFG 474 (521)
Q Consensus 403 ~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 474 (521)
+++...... ++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...+.+.|++++|...+++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 887764221 11 2377778888888 888888888888887542 23667777788888888888888888888
Q ss_pred HHHCCCCCCH
Q 009977 475 LVEMGFKPES 484 (521)
Q Consensus 475 ~~~~~~~~~~ 484 (521)
+.+. .|+.
T Consensus 475 a~~~--~~~~ 482 (514)
T 2gw1_A 475 SADL--ARTM 482 (514)
T ss_dssp HHHH--CSSH
T ss_pred HHHh--cccc
Confidence 8876 3544
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=5.6e-26 Score=225.05 Aligned_cols=404 Identities=11% Similarity=0.010 Sum_probs=220.8
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHH
Q 009977 59 FISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMK 138 (521)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (521)
...|..+...+.+.|++++|++.|++++... +.+...|..++.++.+.|++++|.+.++++.+.+ |.+..++..++.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 3467778889999999999999999998664 5678999999999999999999999999999886 667889999999
Q ss_pred HHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcC-----CCCCcHHH---------
Q 009977 139 HFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHL-----RLKPNTCI--------- 204 (521)
Q Consensus 139 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~--------- 204 (521)
+|...|++++|++.|+.+.. .|+. ....+..+...+....|...++.+.... ...|+...
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL----NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHcCCHHHHHHHHHHHhc----CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 99999999999999975531 2221 1222334555566677888888775421 11122211
Q ss_pred ---------------------HHHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHh
Q 009977 205 ---------------------FNILIKHHCKR--------GTLESAFEVLKEMKKSQMSYPN-----LITYSTLIDGLCK 250 (521)
Q Consensus 205 ---------------------~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~ 250 (521)
...+...+... |++++|..+++++.+..+..++ ..++..+...+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 11111221111 2455555555555544432111 1123444444555
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 009977 251 NGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKE 330 (521)
Q Consensus 251 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 330 (521)
.|++++|+..|+++... .|+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|..
T Consensus 256 ~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp TTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 55555555555555543 2234445555555555555555555555555443 3344455555555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009977 331 VFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGI 410 (521)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 410 (521)
.++++.+... .+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.....
T Consensus 332 ~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 5555544321 12344455555555555555555555555544322 334455555555555555555555555443211
Q ss_pred c-----cCHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 411 Y-----LNKASYRIVLNFSCQK----------GELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGL 475 (521)
Q Consensus 411 ~-----~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 475 (521)
. .....+......+... |++++|...++++.+.. +.+..++..+..++.+.|++++|...|+++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 0 0111122223334444 55555555555555321 123444555555555555555555555555
Q ss_pred HHC
Q 009977 476 VEM 478 (521)
Q Consensus 476 ~~~ 478 (521)
.+.
T Consensus 489 l~~ 491 (537)
T 3fp2_A 489 AIL 491 (537)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=7.3e-25 Score=211.96 Aligned_cols=312 Identities=12% Similarity=0.071 Sum_probs=189.8
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHH
Q 009977 59 FISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMK 138 (521)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (521)
...|..++..+.+.|++++|+.+|++++... +.+..+|..++.++...|++++|...|+++.+.+ +.+..++..++.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 4456666666666666667766666665432 3456666666666666666666666666666654 344556666666
Q ss_pred HHHccCcHHHHHHHHHhhccccCCCCC-H---hHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHh
Q 009977 139 HFSNCSLHERVLEMFHKIHPITREKPS-L---KAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCK 214 (521)
Q Consensus 139 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 214 (521)
.|...|++++|++.|+++.. ..|+ . ..+..++..+. ...+..++..+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~ 155 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLK---SNPSENEEKEAQSQLIKSDE------------------------MQRLRSQALNAFG 155 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHHHH------------------------HHHHHHHHHHHHH
Confidence 66666666666666666642 1222 2 23333322210 0122333455677
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 009977 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAK 294 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 294 (521)
.|++++|...|+++.+..+ .+..++..++.+|...|++++|++.|+++.... +.+..++..++.+|...|++++|.
T Consensus 156 ~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 231 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVCV--WDAELRELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSL 231 (450)
T ss_dssp HTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7777778777777777665 466777777777777788888887777776652 455677777777777777777777
Q ss_pred HHHHHHHHcCCCCCcchHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhc
Q 009977 295 KIMEFMKNNGCNPNVFNYTTL------------MNGFCKEGKLQEAKEVFDEMKNFLLKPD-----TIGYTTLINCFCRA 357 (521)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~ 357 (521)
..|+++.+.. +.+...+..+ +..+...|++++|...|+++.+. .|+ ...+..+..++.+.
T Consensus 232 ~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 232 SEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHC
Confidence 7777777653 3333333333 55566666666666666666553 222 23455555666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 358 GRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYD 408 (521)
Q Consensus 358 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 408 (521)
|++++|+..++++.+..+. +..+|..++.+|...|++++|...++++.+.
T Consensus 309 g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 309 EKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 6666666666666554322 4555666666666666666666666666554
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=1.5e-24 Score=209.74 Aligned_cols=329 Identities=14% Similarity=0.063 Sum_probs=213.5
Q ss_pred HHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 009977 113 AVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYS 192 (521)
Q Consensus 113 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 192 (521)
.+...+....... |.+...+..++..|.+.|++++|++.|+++... .+.+..++..+..++...|++++|...++++
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555555443 455667777888888888888888888877532 3445667777777888888888888888877
Q ss_pred hhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCH---HHHHHHHHH------------HHhcCChHHH
Q 009977 193 NQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNL---ITYSTLIDG------------LCKNGRFREA 257 (521)
Q Consensus 193 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~------------~~~~g~~~~A 257 (521)
++. .+.+..++..++.+|.+.|++++|.+.|+++.+..+ .+. ..+..++.. +...|++++|
T Consensus 87 l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 87 IQL--KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP--SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred Hhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 653 234566777788888888888888888888777654 344 566666433 6777777777
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 258 IELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
+..|+++.... +.+...+..++.+|.+.|++++|...|+++.+.. +.+..++..++.+|...|++++|...|+++..
T Consensus 163 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 163 IAFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777653 4566677777777777777777777777777654 45566777777777777777777777777765
Q ss_pred CCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCc----HhHHHHHHHHHHhcCCHHHHHHH
Q 009977 338 FLLKPDTIGYTTL------------INCFCRAGRVDEALELLKEMKERGCKAD----IVTFNIILGGLCREGKIEEALGM 401 (521)
Q Consensus 338 ~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~ 401 (521)
... .+...+..+ ...+...|++++|+..|+++.+..+. + ...+..++..+.+.|++++|...
T Consensus 240 ~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 240 LDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp HCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 321 124444433 56666777777777777777665322 2 23566666677777777777777
Q ss_pred HHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 009977 402 LEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELL 456 (521)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~ 456 (521)
++++....+. +...|..+..+|...|++++|...++++++ +.| +...+..+.
T Consensus 318 ~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 318 CSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 7776654322 556677777777777777777777777764 345 344444444
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.1e-23 Score=203.28 Aligned_cols=382 Identities=14% Similarity=0.041 Sum_probs=300.3
Q ss_pred CCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHH
Q 009977 57 SRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNL 136 (521)
Q Consensus 57 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (521)
|+...|..++.++...|++++|++.|+++++.. +.+...|..++.++...|++++|...|+++...+ +.+......+
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ 113 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPM 113 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHH
Confidence 456678889999999999999999999997654 5677899999999999999999999999999876 4444444444
Q ss_pred HHHHHccCcHHHHHHHHHhh--------------------------------------ccc-----cCCCCCHhHHHHHH
Q 009977 137 MKHFSNCSLHERVLEMFHKI--------------------------------------HPI-----TREKPSLKAISTCL 173 (521)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~--------------------------------------~~~-----~~~~~~~~~~~~ll 173 (521)
+..+........+.+.+..+ ... ...+.+...+....
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (514)
T 2gw1_A 114 LERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNG 193 (514)
T ss_dssp HHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHH
Confidence 44333322222222222110 000 00011234444445
Q ss_pred HHHHh---cCCHHHHHHHHHHhhh-----cCCC-------CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCH
Q 009977 174 NLLIE---SNQVDLAQNFLKYSNQ-----HLRL-------KPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNL 238 (521)
Q Consensus 174 ~~~~~---~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 238 (521)
..+.. .|++++|...++++.+ .... +.+..++..++..+...|++++|...|+++....+ . .
T Consensus 194 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~-~ 270 (514)
T 2gw1_A 194 LSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--R-V 270 (514)
T ss_dssp HHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--C-H
T ss_pred HHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--c-H
Confidence 55554 8999999999999876 2111 23466889999999999999999999999998875 3 8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 009977 239 ITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNG 318 (521)
Q Consensus 239 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (521)
..+..++..+...|++++|+..++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..++..
T Consensus 271 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 347 (514)
T 2gw1_A 271 NSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACL 347 (514)
T ss_dssp HHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHH
Confidence 889999999999999999999999998763 5567789999999999999999999999999875 5577889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Cc----HhHHHHHHHHHHh--
Q 009977 319 FCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCK-AD----IVTFNIILGGLCR-- 391 (521)
Q Consensus 319 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~-- 391 (521)
+...|++++|...++++.+.. ..+...+..+...+...|++++|...++++.+.... ++ ...+..+...+..
T Consensus 348 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 426 (514)
T 2gw1_A 348 AYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNP 426 (514)
T ss_dssp TTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999988753 235678889999999999999999999998875322 11 3388899999999
Q ss_pred -cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH
Q 009977 392 -EGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYAT 451 (521)
Q Consensus 392 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 451 (521)
.|++++|...++++...... +..++..+...|...|++++|...|+++.+ +.|+...
T Consensus 427 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~ 484 (514)
T 2gw1_A 427 TVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTMEE 484 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHH
T ss_pred hcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccHH
Confidence 99999999999999887543 678889999999999999999999999996 4565433
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=4.8e-22 Score=185.90 Aligned_cols=319 Identities=13% Similarity=0.044 Sum_probs=240.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009977 165 SLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTL 244 (521)
Q Consensus 165 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 244 (521)
+...+..+...+...|++++|...++.+++. .+.+..++..++..+...|++++|...|+++.+..+ .+...|..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM--DFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CcchHHHHH
Confidence 4566778888899999999999999988763 345677889999999999999999999999888776 477888899
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCC---CCHHHHHHH------------HHHHHhCCCHHHHHHHHHHHHHcCCCCCc
Q 009977 245 IDGLCKNGRFREAIELFEEMVSKDQIL---PDALTYNVL------------IDGFCRGGKVDRAKKIMEFMKNNGCNPNV 309 (521)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 309 (521)
+..+...|++++|+..|+++.+.. + .+...+..+ ...+...|++++|.+.++.+.+.. +.+.
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 154 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDA 154 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCch
Confidence 999999999999999999998652 3 344455544 567788888888888888888765 5567
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHH------
Q 009977 310 FNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFN------ 383 (521)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------ 383 (521)
.++..++.++...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+..+. +...+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~ 232 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK 232 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHH
Confidence 788888888888888888888888887753 235778888888888888888888888888876433 333332
Q ss_pred ------HHHHHHHhcCCHHHHHHHHHHHHHCCCccCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHH
Q 009977 384 ------IILGGLCREGKIEEALGMLEKLWYDGIYLNK----ASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATS 452 (521)
Q Consensus 384 ------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~ 452 (521)
.++..+...|++++|...++++...... +. ..+..+...+...|++++|...++++++. .| +..++
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 309 (359)
T 3ieg_A 233 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHH
Confidence 2255677888888888888888775433 22 22445667778888888888888888754 34 67777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 009977 453 NELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICR 496 (521)
Q Consensus 453 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 496 (521)
..+...+...|++++|...|+++.+.. +.+...+..+..+...
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 888888888888888888888887763 2234555555555443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=5.3e-21 Score=178.75 Aligned_cols=317 Identities=13% Similarity=0.027 Sum_probs=203.9
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHH
Q 009977 130 EGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILI 209 (521)
Q Consensus 130 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 209 (521)
...+..+...+...|++++|++.|+++... .+.+..++..+..++...|++++|...++.+.+. .+.+...+..++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~ 78 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHH
Confidence 345666777777777777777777777532 2344566677777777777777777777776643 233556777777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCC-CCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHH
Q 009977 210 KHHCKRGTLESAFEVLKEMKKSQMSY-PNLITYSTL------------IDGLCKNGRFREAIELFEEMVSKDQILPDALT 276 (521)
Q Consensus 210 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 276 (521)
..+...|++++|...|+++.+..+.. .+...+..+ +..+...|++++|++.++++.+.. +.+...
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 156 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAEL 156 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHH
Confidence 77777777777777777777654300 133344433 466677777777777777776653 455666
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------
Q 009977 277 YNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTT------- 349 (521)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------- 349 (521)
+..+...+...|++++|...++.+.+.. +.+..++..++..+...|++++|...++++.+.... +...+..
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHH
Confidence 7777777777777777777777777654 456667777777777777777777777777653221 2333322
Q ss_pred -----HHHHHHhcCCHHHHHHHHHHHHHcCCCCcH----hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHH
Q 009977 350 -----LINCFCRAGRVDEALELLKEMKERGCKADI----VTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIV 420 (521)
Q Consensus 350 -----l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 420 (521)
+...+...|++++|...++++.+.... +. ..+..+...+...|++++|...++++.+..+. +..++..+
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 312 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 244566777777777777777765433 22 22444666777777777777777777765322 56667777
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 009977 421 LNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVR 458 (521)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~ 458 (521)
...+...|++++|...|+++++ +.| +...+..+..+
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHH
Confidence 7777777777777777777774 345 34444444433
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=5.4e-22 Score=196.40 Aligned_cols=404 Identities=13% Similarity=0.044 Sum_probs=258.3
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHH
Q 009977 95 NATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLN 174 (521)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 174 (521)
...|..+...+.+.|++++|...|+++.+.+ |.+..++..++.+|...|++++|++.|+++... .+.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHH
Confidence 4567888999999999999999999999886 667889999999999999999999999998743 3556778899999
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----CCCHHH---------
Q 009977 175 LLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMS-----YPNLIT--------- 240 (521)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~--------- 240 (521)
++...|++++|...++.+. ..|+. ....+..+...+...+|...++++....+. .|+...
T Consensus 102 ~~~~~g~~~~A~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLS----LNGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHcCCHHHHHHHHHHHh----cCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 9999999999999997442 22332 222344555666678888888888654210 122111
Q ss_pred ---------------------HHHHHHHHHhc--------CChHHHHHHHHHHHhcCCCCCC-----HHHHHHHHHHHHh
Q 009977 241 ---------------------YSTLIDGLCKN--------GRFREAIELFEEMVSKDQILPD-----ALTYNVLIDGFCR 286 (521)
Q Consensus 241 ---------------------~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~ 286 (521)
...+...+... |++++|+.+|+++.+..+..++ ..++..+...+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 11111111111 3567777777777654311111 2245555666667
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009977 287 GGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALEL 366 (521)
Q Consensus 287 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 366 (521)
.|++++|...++.+.+.. |+..++..++..+...|++++|...++++.+... .+..++..+...+...|++++|+..
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 777777777777777653 4466666777777777777777777777665432 2466677777777777777777777
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--
Q 009977 367 LKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRG-- 444 (521)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 444 (521)
++++.+..+. +...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++++..
T Consensus 333 ~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 7777765433 4556677777777777777777777777665432 45566677777777777777777777766431
Q ss_pred ---CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----CcHHHHHHHH
Q 009977 445 ---FLPHYATSNELLVRLCKA----------GMAEDAAIALFGLVEMGFKPESDSWALLVELICRG----RKLLFAFELL 507 (521)
Q Consensus 445 ---~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~ 507 (521)
.......+......+... |++++|...++++.+. .|+ .......+... |++++|.+.|
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~---~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPR---SEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHhccHHHHHHHH
Confidence 011222233445556666 7777777777777654 232 22222222233 6777777777
Q ss_pred HHHHHcCccC
Q 009977 508 DELVIKESGT 517 (521)
Q Consensus 508 ~~m~~~~~~~ 517 (521)
+++++..+..
T Consensus 486 ~~al~~~~~~ 495 (537)
T 3fp2_A 486 EDSAILARTM 495 (537)
T ss_dssp HHHHHHC--C
T ss_pred HHHHHhCCCc
Confidence 7777765543
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=3.3e-19 Score=173.80 Aligned_cols=364 Identities=13% Similarity=0.014 Sum_probs=286.0
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHc----cCcHHHH
Q 009977 78 ALEIFNTVSEQKGFNHNNATYATILDKLAR----YKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSN----CSLHERV 149 (521)
Q Consensus 78 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 149 (521)
++..+...... .+...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|
T Consensus 26 ~~~~~~~~a~~----g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 26 NLEQLKQKAES----GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 35555555332 367777778888877 788888888888887764 45677788888887 7888888
Q ss_pred HHHHHhhccccCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHh----cCChHHH
Q 009977 150 LEMFHKIHPITREKPSLKAISTCLNLLIE----SNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCK----RGTLESA 221 (521)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 221 (521)
++.|++... ..+..++..+...|.. .+++++|...|++..+. .+...+..|...|.. .+++++|
T Consensus 99 ~~~~~~a~~----~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 99 VIWYKKAAL----KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 888888753 2356677777777777 78888999888888653 356778888888877 7889999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----CCCHHHH
Q 009977 222 FEVLKEMKKSQMSYPNLITYSTLIDGLCK----NGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCR----GGKVDRA 293 (521)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 293 (521)
.+.|++..+. .+...+..+...|.. .+++++|+++|++..+.+ +...+..+...|.. .+++++|
T Consensus 171 ~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 171 REWYSKAAEQ----GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp HHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHC----CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999988875 366778888888887 888999999999887652 46677788888876 7889999
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHH
Q 009977 294 KKIMEFMKNNGCNPNVFNYTTLMNGFCK----EGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRA-----GRVDEAL 364 (521)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~ 364 (521)
..+|++..+.| +...+..+..+|.. .++.++|...|++..+.+ +...+..+...|... +++++|+
T Consensus 243 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 243 RVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 99999888764 45577778888877 889999999999887643 566777788888777 8999999
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc----CCCHHHHHHHH
Q 009977 365 ELLKEMKERGCKADIVTFNIILGGLCREG---KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ----KGELEKAIELL 437 (521)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 437 (521)
..|++..+.+ +...+..+...|...| +.++|.++|++..+.+ ++..+..+...|.. .+++++|...|
T Consensus 317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999988875 4567777888887766 7889999999888763 56778888888887 78999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 009977 438 RLMLCRGFLPHYATSNELLVRLCK----AGMAEDAAIALFGLVEMG 479 (521)
Q Consensus 438 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 479 (521)
+++.+.+ +...+..+...|.. .+++++|...|++..+.+
T Consensus 391 ~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 391 RKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 9988764 56777788888887 789999999999988775
No 16
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=1.6e-19 Score=177.94 Aligned_cols=414 Identities=9% Similarity=0.048 Sum_probs=266.5
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHH
Q 009977 92 NHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAIST 171 (521)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 171 (521)
|.|...|..++. +.+.|++++|..+|+++.+.. |.+...|...+..+.+.|++++|.++|++... ..|+...|..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~---~~p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM---KVLHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---TCCCHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCChHHHHH
Confidence 345556666665 345566666666666666543 44555666666666666666666666666642 2344444444
Q ss_pred HHHHH-HhcCCHHHHHH----HHHHhhhcCCCCC-cHHHHHHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCC
Q 009977 172 CLNLL-IESNQVDLAQN----FLKYSNQHLRLKP-NTCIFNILIKHHCK---------RGTLESAFEVLKEMKKSQMSYP 236 (521)
Q Consensus 172 ll~~~-~~~~~~~~a~~----~~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~ 236 (521)
.+... ...|+.+.|.+ +|+.++...|..| +...|...+....+ .|+++.|..+|++..+. +...
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~ 163 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMIN 163 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTT
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhh
Confidence 44322 23344444333 5555544334333 34456555555443 56667777777776652 2111
Q ss_pred CHHHHHHHHHHH-------------HhcCChHHHHHHHHHH------HhcC--CCCCC--------HHHHHHHHHHHHhC
Q 009977 237 NLITYSTLIDGL-------------CKNGRFREAIELFEEM------VSKD--QILPD--------ALTYNVLIDGFCRG 287 (521)
Q Consensus 237 ~~~~~~~l~~~~-------------~~~g~~~~A~~~~~~~------~~~~--~~~~~--------~~~~~~l~~~~~~~ 287 (521)
....|....... ...+++..|..++.++ .+.. .++|+ ...|...+......
T Consensus 164 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~ 243 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243 (530)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence 123333222110 1234566777666652 2110 12443 23455554433221
Q ss_pred ----CCH----HHHHHHHHHHHHcCCCCCcchHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHH
Q 009977 288 ----GKV----DRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK-------EGKLQ-------EAKEVFDEMKNFLLKPDTI 345 (521)
Q Consensus 288 ----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~~~~~~~~~ 345 (521)
++. ..+..+|++++... +.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+..
T Consensus 244 ~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~ 322 (530)
T 2ooe_A 244 PLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML 322 (530)
T ss_dssp SSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred CccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence 232 47778898888764 5677888888888875 68876 8999999988621233588
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHH-
Q 009977 346 GYTTLINCFCRAGRVDEALELLKEMKERGCKAD-IVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNF- 423 (521)
Q Consensus 346 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 423 (521)
.|..++..+.+.|++++|..+|+++.+..+. + ...|..++..+.+.|++++|..+|++..+.... +...|...+..
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~ 400 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHH
Confidence 8999999999999999999999999986432 3 257888888888999999999999999876322 33333332222
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHccCc
Q 009977 424 SCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMG-FKPE--SDSWALLVELICRGRK 499 (521)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~ 499 (521)
+...|+.++|..+|+.+++. .| +...+..++..+.+.|+.++|..+|++++..+ ..|+ ...|...+......|+
T Consensus 401 ~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 33589999999999999864 45 68888999999999999999999999998763 2222 3478888888888999
Q ss_pred HHHHHHHHHHHHHcCcc
Q 009977 500 LLFAFELLDELVIKESG 516 (521)
Q Consensus 500 ~~~A~~~~~~m~~~~~~ 516 (521)
.+.+..+++++.+..|.
T Consensus 479 ~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 479 LASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHCch
Confidence 99999999999887664
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.90 E-value=2.3e-18 Score=167.90 Aligned_cols=364 Identities=14% Similarity=0.068 Sum_probs=308.9
Q ss_pred HHHHHHHhhhccCCcCHHHHHHHHHHHHc----cCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHh----cCCHHHH
Q 009977 114 VDAVLRQMTYETCKFHEGIFLNLMKHFSN----CSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIE----SNQVDLA 185 (521)
Q Consensus 114 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a 185 (521)
+...++...+.| +......+...|.. .+++++|++.|++..+ ..+..++..+...|.. .+++++|
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~----~~~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE----QGYTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 345555555543 66788888888887 8999999999999864 2467788888899998 8999999
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChHHH
Q 009977 186 QNFLKYSNQHLRLKPNTCIFNILIKHHCK----RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCK----NGRFREA 257 (521)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 257 (521)
...|++..+. .+...+..|...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|
T Consensus 99 ~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 99 VIWYKKAALK----GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999998753 367788889999988 889999999999998864 56778888888887 8899999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh----cCCHHHHH
Q 009977 258 IELFEEMVSKDQILPDALTYNVLIDGFCR----GGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK----EGKLQEAK 329 (521)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~ 329 (521)
+++|++..+.+ +...+..+...|.. .+++++|.++|++..+.| +...+..+...|.. .+++++|.
T Consensus 171 ~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 171 REWYSKAAEQG----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHCC----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99999998763 67888999999988 899999999999999865 56678888888886 89999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-----CCHHHHHH
Q 009977 330 EVFDEMKNFLLKPDTIGYTTLINCFCR----AGRVDEALELLKEMKERGCKADIVTFNIILGGLCRE-----GKIEEALG 400 (521)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~ 400 (521)
..|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...|... +++++|..
T Consensus 244 ~~~~~a~~~---~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~ 317 (490)
T 2xm6_A 244 VLFSQSAEQ---GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAIS 317 (490)
T ss_dssp HHHHHHHTT---TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred HHHHHHHHC---CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 999999875 356777788888887 899999999999998775 566788888888887 89999999
Q ss_pred HHHHHHHCCCccCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 009977 401 MLEKLWYDGIYLNKASYRIVLNFSCQKG---ELEKAIELLRLMLCRGFLPHYATSNELLVRLCK----AGMAEDAAIALF 473 (521)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~ 473 (521)
++++..+.+ +...+..+...|...| ++++|+++|++..+.+ +...+..+...|.. .+++++|...|+
T Consensus 318 ~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 391 (490)
T 2xm6_A 318 WYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMR 391 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 999999875 4567777888787766 7899999999999763 67788889999988 899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHHHHcC
Q 009977 474 GLVEMGFKPESDSWALLVELICR----GRKLLFAFELLDELVIKE 514 (521)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 514 (521)
+..+.+ +...+..+...|.. .+++++|..+|++..+.+
T Consensus 392 ~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 392 KAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 999864 57788889999988 899999999999999987
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=1.1e-20 Score=174.52 Aligned_cols=246 Identities=11% Similarity=0.000 Sum_probs=114.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 205 FNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG-RFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 205 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
+..++..+...|++++|...++++.+..+ .+...|..++..+...| ++++|++.|+++.... +.+...+..+...
T Consensus 59 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~ 134 (330)
T 3hym_B 59 LPVHIGTLVELNKANELFYLSHKLVDLYP--SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHS 134 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHH
Confidence 33334444444444444444444444333 23344444444444444 4444444444444331 2233344444444
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009977 284 FCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEA 363 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 363 (521)
+...|++++|...++++.+.. +.+...+..++..|...|++++|...++++.+.. ..+...+..+...+...|++++|
T Consensus 135 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 212 (330)
T 3hym_B 135 FAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTA 212 (330)
T ss_dssp HHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHH
Confidence 444444444544444444432 2233344444444555555555555555444422 11344444555555555555555
Q ss_pred HHHHHHHHHcC--------CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHH
Q 009977 364 LELLKEMKERG--------CKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIE 435 (521)
Q Consensus 364 ~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (521)
...++++.+.. ...+..++..+...+...|++++|...++++.+.... +...+..+...+...|++++|..
T Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 291 (330)
T 3hym_B 213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVD 291 (330)
T ss_dssp HHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHH
Confidence 55555544321 0112345555555555555555555555555544322 34455555555555555555555
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHH
Q 009977 436 LLRLMLCRGFLP-HYATSNELLVRL 459 (521)
Q Consensus 436 ~~~~~~~~~~~p-~~~~~~~l~~~~ 459 (521)
.++++.+ +.| +...+..+..++
T Consensus 292 ~~~~al~--~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 292 YFHTALG--LRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHTTTT--TCSCCHHHHHHHHHHH
T ss_pred HHHHHHc--cCCCchHHHHHHHHHH
Confidence 5555553 233 444444444444
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=2.2e-20 Score=172.37 Aligned_cols=295 Identities=10% Similarity=0.002 Sum_probs=248.9
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH
Q 009977 198 LKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTY 277 (521)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 277 (521)
.+.+...+..++..+...|++++|.++|+++.+..+ .+...+..++.++...|++++|..+++++.+.. +.+...+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 93 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP--FHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSW 93 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHH
Confidence 445566788889999999999999999999998876 466677788899999999999999999999864 5567889
Q ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 009977 278 NVLIDGFCRGG-KVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCR 356 (521)
Q Consensus 278 ~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 356 (521)
..+...+...| ++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.... +...+..+...|..
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence 99999999999 9999999999999875 556788999999999999999999999999875322 45677778999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CccCHHHHHHHHHHHHcCC
Q 009977 357 AGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDG--------IYLNKASYRIVLNFSCQKG 428 (521)
Q Consensus 357 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 428 (521)
.|++++|...++++.+..+. +...+..++..+...|++++|...++++.... ......++..+...+...|
T Consensus 172 ~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 99999999999999987644 67889999999999999999999999988641 1234578899999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCcHH
Q 009977 429 ELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELI-CRGRKLL 501 (521)
Q Consensus 429 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 501 (521)
++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus 251 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 251 KYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred CHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999642 3377888999999999999999999999988764 34567888888887 4566644
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=9.4e-21 Score=177.88 Aligned_cols=309 Identities=11% Similarity=-0.049 Sum_probs=179.0
Q ss_pred HhcCCHHHHHH-HHHHhhhcCCCCC--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009977 177 IESNQVDLAQN-FLKYSNQHLRLKP--NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGR 253 (521)
Q Consensus 177 ~~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 253 (521)
...|++++|.. .+++........| +...+..++..+.+.|++++|...|+++.+..+ .+..+|..++.++...|+
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP--KHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCcC
Confidence 34467777777 6665543211112 234567778888888888888888888887765 567778888888888888
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 009977 254 FREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFD 333 (521)
Q Consensus 254 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 333 (521)
+++|++.|+++.+.. +.+..++..++..+...|++++|...++++.+.. +.+...+..+... ..
T Consensus 114 ~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~------ 177 (368)
T 1fch_A 114 ELLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG------ 177 (368)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC--------------------
T ss_pred HHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh------
Confidence 888888888887763 5567778888888888888888888888887764 2233222211000 00
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCcc
Q 009977 334 EMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKA-DIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYL 412 (521)
Q Consensus 334 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 412 (521)
. ..+ ...+..+...+ ..|++++|+..++++.+..+.. +..++..++..|...|++++|...++++....+.
T Consensus 178 -~----~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~- 249 (368)
T 1fch_A 178 -G----AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN- 249 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred -h----hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Confidence 0 000 00111122222 5566666666666665543221 3455666666666666666666666666554322
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------
Q 009977 413 NKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKP---------- 482 (521)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------- 482 (521)
+...+..+...+...|++++|+..++++++.. +.+..++..+..++.+.|++++|...++++.+.....
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 45566666666666666666666666666431 2245566666666666666666666666665431100
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 009977 483 ESDSWALLVELICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 512 (521)
...+|..++.++...|++++|..++++.++
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 145666677777777777777666654443
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=1.4e-20 Score=176.77 Aligned_cols=326 Identities=14% Similarity=0.019 Sum_probs=185.8
Q ss_pred CCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHH-HHHhhccccCCCC--CHhHHHHHHHHHHhcCCHHHH
Q 009977 109 KKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLE-MFHKIHPITREKP--SLKAISTCLNLLIESNQVDLA 185 (521)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a 185 (521)
+.++.+...++.+...+. . .+...|++++|++ .|++........| +...+..+...+...|++++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 83 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDA--E---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNA 83 (368)
T ss_dssp ------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHcCCc--h---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHH
Confidence 344555555555554431 1 2344578888988 8887665444333 345677888899999999999
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009977 186 QNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMV 265 (521)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 265 (521)
...++++++. .+.+..++..++.++...|++++|...|+++.+..+ .+..++..++..+...|++++|++.++++.
T Consensus 84 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 84 VLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP--DNQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp HHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998763 345678899999999999999999999999988876 578899999999999999999999999998
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CH
Q 009977 266 SKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKP-DT 344 (521)
Q Consensus 266 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 344 (521)
...+ .+...+..+... .. .. .+ ...+..+...+ ..|++++|...++++.+..... +.
T Consensus 160 ~~~~--~~~~~~~~~~~~-------~~-------~~----~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~ 217 (368)
T 1fch_A 160 RYTP--AYAHLVTPAEEG-------AG-------GA----GL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDP 217 (368)
T ss_dssp HTST--TTGGGCC----------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCH
T ss_pred HhCc--CcHHHHHHHHHH-------hh-------hh----cc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccH
Confidence 7642 222222111000 00 00 00 00111122222 5556666666666555432111 35
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHH
Q 009977 345 IGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFS 424 (521)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (521)
.++..+...|...|++++|+..++++.+..+. +..++..++..+...|++++|...++++....+. +...+..+..+|
T Consensus 218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~ 295 (368)
T 1fch_A 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISC 295 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 55556666666666666666666666554322 4455666666666666666666666666554322 455566666666
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 425 CQKGELEKAIELLRLMLCRGFLP------------HYATSNELLVRLCKAGMAEDAAIALFGL 475 (521)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~~~~p------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 475 (521)
...|++++|...|+++++. .| ...++..+..++...|++++|..++++.
T Consensus 296 ~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 6666666666666666542 11 1456666677777777777766665543
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=3.8e-18 Score=168.08 Aligned_cols=409 Identities=10% Similarity=0.043 Sum_probs=301.0
Q ss_pred CCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHH
Q 009977 58 RFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLM 137 (521)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (521)
+...|..++. +.+.|++++|..+|++++.. +|.+...|..++..+.+.|++++|..+|++.+... |+...|...+
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 4557888888 47789999999999999765 36788899999999999999999999999999874 4777777777
Q ss_pred HHH-HccCcHHHHHH----HHHhhccccCC-CCCHhHHHHHHHHHHh---------cCCHHHHHHHHHHhhhcCCCCCcH
Q 009977 138 KHF-SNCSLHERVLE----MFHKIHPITRE-KPSLKAISTCLNLLIE---------SNQVDLAQNFLKYSNQHLRLKPNT 202 (521)
Q Consensus 138 ~~~-~~~g~~~~a~~----~~~~~~~~~~~-~~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~ 202 (521)
... ...|+.++|.+ +|++.....+. .++...|...+..... .|+++.|..+|+++++. ...+..
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~ 165 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIE 165 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHH
Confidence 533 45577666554 77766433232 3456677777776654 68999999999999752 111112
Q ss_pred HHHHHHHHHH-------------HhcCChHHHHHHHHHH------HhCCC--CCCC--------HHHHHHHHHHHHhc--
Q 009977 203 CIFNILIKHH-------------CKRGTLESAFEVLKEM------KKSQM--SYPN--------LITYSTLIDGLCKN-- 251 (521)
Q Consensus 203 ~~~~~l~~~~-------------~~~g~~~~A~~~~~~~------~~~~~--~~~~--------~~~~~~l~~~~~~~-- 251 (521)
..|....... .+.++++.|..++.++ .+... ..|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 3444333221 1345677888777763 22211 0122 34566555433322
Q ss_pred --CCh----HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-------CCCHH-------HHHHHHHHHHHcCCCCCcch
Q 009977 252 --GRF----REAIELFEEMVSKDQILPDALTYNVLIDGFCR-------GGKVD-------RAKKIMEFMKNNGCNPNVFN 311 (521)
Q Consensus 252 --g~~----~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~ 311 (521)
++. +++..+|++++... +.+...|..++..+.+ .|+++ +|..++++.++.-.+.+...
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 232 47888999998863 5678888888888875 78877 89999999987323556888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHH-
Q 009977 312 YTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD--TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGG- 388 (521)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~- 388 (521)
|..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|..+|++..+.... +...|...+..
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~ 400 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHH
Confidence 999999999999999999999999984 443 358999999999999999999999999876332 33333332222
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCH
Q 009977 389 LCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRG-FLP--HYATSNELLVRLCKAGMA 465 (521)
Q Consensus 389 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~ 465 (521)
+...|+.++|..+|++..+..+. +...|..++..+.+.|+.++|..+|++++... ..| ....|...+......|+.
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 34689999999999999886432 67889999999999999999999999999753 233 345788888888899999
Q ss_pred HHHHHHHHHHHHC
Q 009977 466 EDAAIALFGLVEM 478 (521)
Q Consensus 466 ~~a~~~~~~~~~~ 478 (521)
+.+..++.++.+.
T Consensus 480 ~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 480 ASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998864
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.2e-18 Score=169.39 Aligned_cols=391 Identities=13% Similarity=-0.061 Sum_probs=228.4
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhc--------cCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCC-
Q 009977 92 NHNNATYATILDKLARYKKFEAVDAVLRQMTYE--------TCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITRE- 162 (521)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~- 162 (521)
+.....|+.+..++...|++++|++.|++..+. ..+....+|..+..+|...|++++|+..+++.......
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 444567888999999999999999999887542 11233457778888888889999998888876432111
Q ss_pred -----CCCHhHHHHHHHHHHh--cCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHH---HHhcCChHHHHHHHHHHHhCC
Q 009977 163 -----KPSLKAISTCLNLLIE--SNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKH---HCKRGTLESAFEVLKEMKKSQ 232 (521)
Q Consensus 163 -----~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~ 232 (521)
.....++.....++.. .+++++|...|+++++. .+.++..+..+..+ +...++.++|++.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1123344444444433 34567777777776642 12234444444433 334566666777777766665
Q ss_pred CCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 009977 233 MSYPNLITYSTLIDGLCK----NGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPN 308 (521)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 308 (521)
+ .+..++..+...+.. .|++++|.+.+++..... +.+...+..+...|...|++++|...++++.+.. +.+
T Consensus 206 p--~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 280 (472)
T 4g1t_A 206 P--DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNN 280 (472)
T ss_dssp S--SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred C--cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCh
Confidence 5 455555555544443 345667777777766553 4455666677777777777777777777776653 344
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 009977 309 VFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGG 388 (521)
Q Consensus 309 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (521)
..++..+..+|...+....+.. ...........+.+++|...++...+..+. +..++..+...
T Consensus 281 ~~~~~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~ 343 (472)
T 4g1t_A 281 AYLHCQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASL 343 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHH
Confidence 4555555555432111100000 000000111223467888888888877543 56778889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCccCHH--HHHHHHH-HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 009977 389 LCREGKIEEALGMLEKLWYDGIYLNKA--SYRIVLN-FSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMA 465 (521)
Q Consensus 389 ~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 465 (521)
|...|++++|...|+++......+... .+..+.. .....|++++|+..|+++++ +.|+....... .
T Consensus 344 ~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~---------~ 412 (472)
T 4g1t_A 344 HALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM---------K 412 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH---------H
T ss_pred HHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH---------H
Confidence 999999999999999998875443221 2233332 34578999999999999985 45654332222 2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccCc
Q 009977 466 EDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESGTI 518 (521)
Q Consensus 466 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 518 (521)
..+..++++.++.. +.+..+|..++.+|...|++++|.+.|+++++.++...
T Consensus 413 ~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 413 DKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 34455566665543 45668999999999999999999999999999876654
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=1.5e-17 Score=169.79 Aligned_cols=378 Identities=13% Similarity=0.202 Sum_probs=289.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCC-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHH
Q 009977 63 GAAISLIKCEKEPQCALEIFNTVSEQKG-FNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFS 141 (521)
Q Consensus 63 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (521)
...+..|...|.+.+|+++++++..... |..+...-+.++.+..+. +..+..++.++..... ...+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHH
Confidence 3466678889999999999999864432 445566677777776666 4566666665554221 234778888
Q ss_pred ccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHH
Q 009977 142 NCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESA 221 (521)
Q Consensus 142 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 221 (521)
..|.+++|..+|++.. -...+...+ +...+++++|.++.+++ -++.+|..++.++...|++++|
T Consensus 1061 ~lglyEEAf~IYkKa~------~~~~A~~VL---ie~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFD------VNTSAVQVL---IEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred hCCCHHHHHHHHHHcC------CHHHHHHHH---HHHHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999863 112222222 22778999999998865 2467999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009977 222 FEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMK 301 (521)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 301 (521)
.+.|.+. .|...|..++.++.+.|++++|+++|....+.. ++....+.++.+|++.++++....+.
T Consensus 1125 IdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleele~fI---- 1190 (1630)
T 1xi4_A 1125 IDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI---- 1190 (1630)
T ss_pred HHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHHHHHH----
Confidence 9999653 577788999999999999999999999887653 33333445888999999988644432
Q ss_pred HcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhH
Q 009977 302 NNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVT 381 (521)
Q Consensus 302 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 381 (521)
+ .++...+..++..|...|++++|..+|..+ ..|..++..|.+.|++++|++.+++.. +..+
T Consensus 1191 ~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~a 1252 (1630)
T 1xi4_A 1191 N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRT 1252 (1630)
T ss_pred h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHH
Confidence 2 346667778999999999999999999985 378999999999999999999998762 6789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 009977 382 FNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLC 460 (521)
Q Consensus 382 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 460 (521)
|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+ ++.| +...|..+..+++
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL--~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccChhHhHHHHHHHHHHH
Confidence 999999999999999998876542 3366778899999999999999999999988 4555 6667777777776
Q ss_pred hc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHccCcHHHHHH
Q 009977 461 KA--GMAEDAAIALFGLVEMGFKP------ESDSWALLVELICRGRKLLFAFE 505 (521)
Q Consensus 461 ~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~ 505 (521)
+. ++..++.+.|..-.. ++| +...|..++..|.+.|+++.|..
T Consensus 1326 Ky~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred hCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 54 456666666654332 233 45779999999999999999983
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.86 E-value=1e-19 Score=170.60 Aligned_cols=261 Identities=13% Similarity=-0.025 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 009977 203 CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLID 282 (521)
Q Consensus 203 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (521)
..+..++..+.+.|++++|...|+++.+..+ .+..+|..++..+...|++++|+..|+++.... +.+..++..++.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 141 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDP--GDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAV 141 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 3466667777777777777777777776655 466677777777777777777777777776653 445666777777
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCcc----------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 009977 283 GFCRGGKVDRAKKIMEFMKNNGCNPNVF----------NYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK-PDTIGYTTLI 351 (521)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~ 351 (521)
+|...|++++|...++++.+.. +.+.. .+..+...+...|++++|...++++.+.... .+..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 7777777777777777776643 11122 2223456666666777777777666654221 1456666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHH
Q 009977 352 NCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELE 431 (521)
Q Consensus 352 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (521)
..|...|++++|+..|+++.+..+. +..+|..++.+|...|++++|...++++.+..+. +..++..+..+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHH
Confidence 6666666666666666666665432 4556666666666666666666666666654322 3555666666666666666
Q ss_pred HHHHHHHHHHHCCCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 009977 432 KAIELLRLMLCRGFLP-------------HYATSNELLVRLCKAGMAEDAAIAL 472 (521)
Q Consensus 432 ~a~~~~~~~~~~~~~p-------------~~~~~~~l~~~~~~~g~~~~a~~~~ 472 (521)
+|...|+++++. .| +..++..+..++...|+.+.+..+.
T Consensus 299 ~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 299 EAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 666666666532 11 2344555555555555555555444
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=1.9e-19 Score=168.79 Aligned_cols=277 Identities=12% Similarity=-0.001 Sum_probs=148.6
Q ss_pred CCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHH
Q 009977 58 RFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLM 137 (521)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (521)
+...|..+...+.+.|++++|++.|++++... +.+..+|..++.++...|++++|...|+++.+.. +.+..++..++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 34457777777888888888888888776543 4567777788888888888888888888877765 45567777777
Q ss_pred HHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCC
Q 009977 138 KHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGT 217 (521)
Q Consensus 138 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 217 (521)
..|...|++++|++.|+++....+. +...+..+ ......+..+...+...|+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~--------------------------~~~~~~~~~l~~~~~~~g~ 192 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPK--YKYLVKNK--------------------------KGSPGLTRRMSKSPVDSSV 192 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHH--HHCC---------------------------------------------CCHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCcc--chHHHhhh--------------------------ccchHHHHHHHHHHhhhhh
Confidence 7788888888888877776532111 01111111 0011122333444555555
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 009977 218 LESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIM 297 (521)
Q Consensus 218 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 297 (521)
+++|...|+++.+..+...+..+|..++..+...|++++|++.|+++.+.. +.+..++..+..+|...|++++|+..|
T Consensus 193 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~ 270 (365)
T 4eqf_A 193 LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAY 270 (365)
T ss_dssp HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555555444321244455555555555555555555555554432 334445555555555555555555555
Q ss_pred HHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHH
Q 009977 298 EFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK-----------PDTIGYTTLINCFCRAGRVDEALEL 366 (521)
Q Consensus 298 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~ 366 (521)
+++.+.. +.+..++..++.+|...|++++|...|+++.+.... .+...|..+..++...|+.+.+..+
T Consensus 271 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 349 (365)
T 4eqf_A 271 TRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAA 349 (365)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 5555442 333444555555555555555555555544432100 0134555555666666666655554
Q ss_pred HH
Q 009977 367 LK 368 (521)
Q Consensus 367 ~~ 368 (521)
..
T Consensus 350 ~~ 351 (365)
T 4eqf_A 350 NL 351 (365)
T ss_dssp HT
T ss_pred HH
Confidence 44
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=1.4e-18 Score=160.10 Aligned_cols=280 Identities=11% Similarity=-0.070 Sum_probs=147.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
.+..++..+...|++++|..+|+++.+..+ .+...|..++.++...|++++|.+.++++.+.. +.+..++..+...
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~ 98 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAP--EREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVS 98 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHH
Confidence 455666667777777777777777766655 466667777777777777777777777776652 4456667777777
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHH
Q 009977 284 FCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLIN--CFCRAGRVD 361 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~ 361 (521)
+...|++++|.+.++++.+.. +.+...+..+.... |+......+.. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 777777777777777777653 22333332221000 00000011101 133444455
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 009977 362 EALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLML 441 (521)
Q Consensus 362 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (521)
+|...++++.+.... +...+..++..+...|++++|...++++...... +...+..+...+...|++++|...++++.
T Consensus 156 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555544444322 3444445555555555555555555555443221 34445555555555555555555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 009977 442 CRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKP-----------ESDSWALLVELICRGRKLLFAFELLDEL 510 (521)
Q Consensus 442 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 510 (521)
+.. +.+..++..+...+...|++++|...++++.+..... +...+..+..++.+.|++++|...+++.
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 321 1244455555555555555555555555555432110 2345555666666666666666665554
Q ss_pred HHc
Q 009977 511 VIK 513 (521)
Q Consensus 511 ~~~ 513 (521)
++.
T Consensus 313 l~~ 315 (327)
T 3cv0_A 313 VEP 315 (327)
T ss_dssp SHH
T ss_pred HHh
Confidence 443
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=6.7e-18 Score=164.11 Aligned_cols=385 Identities=10% Similarity=-0.094 Sum_probs=241.0
Q ss_pred CCCChHHHHHHHHhcCChHHHHHHHHHhhhC-------CCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhcc-----
Q 009977 58 RFISHGAAISLIKCEKEPQCALEIFNTVSEQ-------KGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYET----- 125 (521)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 125 (521)
....||.+..++...|++++|++.|+++++. ..-+....+|+.+..+|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556899999999999999999999998542 1123456789999999999999999999999886531
Q ss_pred --CCcCHHHHHHHHHHHHc--cCcHHHHHHHHHhhccccCCCCCHhHHHHHHHH---HHhcCCHHHHHHHHHHhhhcCCC
Q 009977 126 --CKFHEGIFLNLMKHFSN--CSLHERVLEMFHKIHPITREKPSLKAISTCLNL---LIESNQVDLAQNFLKYSNQHLRL 198 (521)
Q Consensus 126 --~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~ 198 (521)
......++.....++.. .+++++|++.|++.....+ .++..+..+..+ +...++.++|++.++++++. .
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p--~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~ 205 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP--KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--N 205 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--C
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--C
Confidence 11234566666655554 4689999999999976433 334455444444 44567888999999988753 2
Q ss_pred CCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH
Q 009977 199 KPNTCIFNILIKHHCK----RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDA 274 (521)
Q Consensus 199 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 274 (521)
+.+..++..+...+.. .|++++|.+.+++.....+ .+..++..++..+...|++++|+..++++.+.. +.+.
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~ 281 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP--GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNA 281 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc--cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChH
Confidence 3456677666655554 5678899999999998876 678889999999999999999999999998863 5567
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009977 275 LTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCF 354 (521)
Q Consensus 275 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 354 (521)
.++..+..+|...+... .... .. .........+.++.|...++...+... .+...+..+...|
T Consensus 282 ~~~~~lg~~y~~~~~~~---------~~~~-~~------~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~ 344 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQV---------MNLR-EN------GMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLH 344 (472)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---------hhHH-HH------HHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHH
Confidence 77877777664321111 0000 00 001111112235666777766665322 2345566677777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcHh--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHH
Q 009977 355 CRAGRVDEALELLKEMKERGCKADIV--TFNIILG-GLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELE 431 (521)
Q Consensus 355 ~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (521)
...|++++|+..|++..+....+... .+..+.. .+...|++++|+..+++..+... +..... +...
T Consensus 345 ~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~--~~~~~~---------~~~~ 413 (472)
T 4g1t_A 345 ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ--KSREKE---------KMKD 413 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC--CCHHHH---------HHHH
T ss_pred HHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHH---------HHHH
Confidence 77777777777777777654332211 1222222 23456777888888777776532 222111 1123
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009977 432 KAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMG 479 (521)
Q Consensus 432 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 479 (521)
.+..+++..++.. +.+..++..+..+|...|++++|+..|++.++.+
T Consensus 414 ~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 414 KLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3444555555321 2366778888888888888888888888887654
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=3.4e-19 Score=164.17 Aligned_cols=250 Identities=11% Similarity=-0.056 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 009977 238 LITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMN 317 (521)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 317 (521)
...+..++..+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..++.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 3445667777777888888888888777653 4466677777777777777777777777777654 445666667777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHH--HHHhcCCH
Q 009977 318 GFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILG--GLCREGKI 395 (521)
Q Consensus 318 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~ 395 (521)
.+...|++++|...++++.+.... +...+..+... .|+......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 777777777777777776653211 11111111000 011111122212 36778899
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 396 EEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGL 475 (521)
Q Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 475 (521)
++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999887544 77889999999999999999999999998642 336788999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 476 VEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 476 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
.+.. +.+...+..++.++.+.|++++|.+.++++++..+.
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 8764 345788999999999999999999999999987765
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=7.7e-19 Score=160.96 Aligned_cols=380 Identities=10% Similarity=0.064 Sum_probs=162.7
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHH
Q 009977 69 IKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHER 148 (521)
Q Consensus 69 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 148 (521)
+.+.|+.++|.++++++ . ++.+|..++.++.+.|++++|++.|.+. ++..+|..++..+...|++++
T Consensus 13 l~~~~~ld~A~~fae~~-~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERC-N------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhC-C------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHH
Confidence 34567788999998887 1 2348889999999999999999988652 455688888888888999999
Q ss_pred HHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009977 149 VLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEM 228 (521)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 228 (521)
|+..++...+ ..+++.+...++.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|...|..+
T Consensus 80 Ai~yl~~ark---~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 80 LVKYLQMARK---KARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp --------------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHH---hCccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 9997776643 24456677788888999999988887763 266678999999999999999999999865
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 009977 229 KKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPN 308 (521)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 308 (521)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...
T Consensus 149 ----------~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ 206 (449)
T 1b89_A 149 ----------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVH 206 (449)
T ss_dssp ----------TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTC
T ss_pred ----------hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhC
Confidence 25888999999999999999999887 15788999999999999999985554432 233
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCC------cHh
Q 009977 309 VFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRA--GRVDEALELLKEMKERGCKA------DIV 380 (521)
Q Consensus 309 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~------~~~ 380 (521)
+.-...++..|.+.|.+++|..+++...... ......|+.+..+|++- ++..+.++.|..- .+++| +..
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~ 283 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAH 283 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHH
Confidence 3445568888999999999999998887643 33477777777777653 3344444444321 11111 456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 009977 381 TFNIILGGLCREGKIEEALGMLEKLWYDG-----------IYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHY 449 (521)
Q Consensus 381 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 449 (521)
.|..+...|...++++.|....-.-.... ...+...|-..+..|. +....++.-+-..+...+++
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~-- 359 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDH-- 359 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCH--
T ss_pred HHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCc--
Confidence 78888888888899888876432221110 0113344444444443 11111222222221111111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 009977 450 ATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELL 507 (521)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 507 (521)
...+..+.+.|.+.-+..++..+... .+..+-.++-+.|....+++.-++.+
T Consensus 360 ---~r~v~~~~~~~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~si 411 (449)
T 1b89_A 360 ---TRAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTSI 411 (449)
T ss_dssp ---HHHHHHHHHTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---HHHHHHHHHcCCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 12444555666666666666555543 23344445556667777766544433
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=1e-17 Score=150.59 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCH
Q 009977 358 GRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGEL 430 (521)
Q Consensus 358 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 430 (521)
|++++|+.+|+++.+..+ .+...++.+..++.+.|++++|...++++....+. +..++..++..+...|+.
T Consensus 180 ~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~ 250 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPETLINLVVLSQHLGKP 250 (291)
T ss_dssp THHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCC
Confidence 344444444444433321 13333444444444444444444444443333221 333333333333334433
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=1.1e-17 Score=150.41 Aligned_cols=222 Identities=17% Similarity=0.138 Sum_probs=88.7
Q ss_pred HHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHh
Q 009977 135 NLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCK 214 (521)
Q Consensus 135 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 214 (521)
.+.++|...|+++.|+..++.. .+|+..++..+...+...++.++|.+.++.+......+.+...+..+..++..
T Consensus 39 ~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~ 113 (291)
T 3mkr_A 39 FLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 3444444444444444433221 22333334444444444444444444444443220012233344444444444
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHH-H--HHHHHHHHHhCCCHH
Q 009977 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDAL-T--YNVLIDGFCRGGKVD 291 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~--~~~l~~~~~~~~~~~ 291 (521)
.|++++|++.+++ + .+...+..++..+.+.|++++|++.|+++.+.. |+.. . ....+..+...|+++
T Consensus 114 ~g~~~~Al~~l~~-----~--~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~ 183 (291)
T 3mkr_A 114 DQNPDAALRTLHQ-----G--DSLECMAMTVQILLKLDRLDLARKELKKMQDQD---EDATLTQLATAWVSLAAGGEKLQ 183 (291)
T ss_dssp TTCHHHHHHHHTT-----C--CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCTTHHH
T ss_pred CCCHHHHHHHHhC-----C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhCchHHH
Confidence 4444444444443 1 334444444444444444444444444444331 1111 0 011112222234444
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHH
Q 009977 292 RAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDE-ALELLKEM 370 (521)
Q Consensus 292 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~ 370 (521)
+|..+|+++.+.. +.+...++.++.++.+.|++++|+..|+++.+... .+..++..++..+...|+.++ +.++++++
T Consensus 184 eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 184 DAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4444444444432 33344444444444444444444444444443211 123344444444444444432 23444444
Q ss_pred HHc
Q 009977 371 KER 373 (521)
Q Consensus 371 ~~~ 373 (521)
.+.
T Consensus 262 ~~~ 264 (291)
T 3mkr_A 262 KDA 264 (291)
T ss_dssp HHH
T ss_pred HHh
Confidence 433
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=3.2e-15 Score=152.92 Aligned_cols=315 Identities=12% Similarity=0.096 Sum_probs=161.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccC
Q 009977 65 AISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCS 144 (521)
Q Consensus 65 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 144 (521)
+...+...|.+++|..+|++.. . .....+.++. ..+++++|.++.++.. ++.+|..+.+++...|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-V-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-C-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCC
Confidence 3444555566666666666541 1 1222222222 4455666666555431 2445666666666666
Q ss_pred cHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q 009977 145 LHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEV 224 (521)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 224 (521)
++++|++.|.+. .+...|..++.++.+.|++++|.+++....+. .+++...+.++.+|.+.+++++...+
T Consensus 1120 ~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred CHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHHHH
Confidence 666666666443 23445555666666666666666666655432 12222233355666666665543222
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009977 225 LKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (521)
. . .++...|..++..|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+++.
T Consensus 1190 I----~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA---- 1247 (1630)
T 1xi4_A 1190 I----N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA---- 1247 (1630)
T ss_pred H----h----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh----
Confidence 1 1 134445555666666666666666666553 24566666666666666666666544
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHH
Q 009977 305 CNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNI 384 (521)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 384 (521)
.+..+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++..+... .-+...|+-
T Consensus 1248 --~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftE 1319 (1630)
T 1xi4_A 1248 --NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE 1319 (1630)
T ss_pred --CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHH
Confidence 233556666666666666666655444322 234445556666666666666666665555433 113334444
Q ss_pred HHHHHHhc--CCHHHHHHHHHHHHHCCC----ccCHHHHHHHHHHHHcCCCHHHHH
Q 009977 385 ILGGLCRE--GKIEEALGMLEKLWYDGI----YLNKASYRIVLNFSCQKGELEKAI 434 (521)
Q Consensus 385 l~~~~~~~--g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~ 434 (521)
+...|++. ++..++.++|..-..... --+...|.-++-.|.+.|+++.|.
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 44444443 233344444432221100 013445666666666666666665
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=1.2e-17 Score=153.24 Aligned_cols=283 Identities=12% Similarity=0.106 Sum_probs=135.2
Q ss_pred hcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 009977 107 RYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQ 186 (521)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 186 (521)
+.|+.++|.+.++++. ++.+|..++.++.+.|++++|++.|.+. ++..+|..++..+...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 5688999999999983 2359999999999999999999999653 46668999999999999999999
Q ss_pred HHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 187 NFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+
T Consensus 82 ~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 82 KYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 988877642 4557789999999999999999998885 167779999999999999999999999976
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 009977 267 KDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIG 346 (521)
Q Consensus 267 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 346 (521)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~ 209 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADE 209 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHH
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhh
Confidence 25899999999999999999999988 36789999999999999999996655542 234444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCcc------CHHHHHH
Q 009977 347 YTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYD-GIYL------NKASYRI 419 (521)
Q Consensus 347 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~------~~~~~~~ 419 (521)
...++..|.+.|.+++|+.+++...... +-....|+.+.-.|++- +.+...+.++..... +++| +...|..
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 5578899999999999999999988765 34677888888888765 334444444333222 3332 4567889
Q ss_pred HHHHHHcCCCHHHHHHH
Q 009977 420 VLNFSCQKGELEKAIEL 436 (521)
Q Consensus 420 l~~~~~~~g~~~~a~~~ 436 (521)
+.-.|.+.++++.|...
T Consensus 288 ~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 288 LVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhhchHHHHHHH
Confidence 99999999999988873
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.77 E-value=9.2e-17 Score=154.05 Aligned_cols=376 Identities=11% Similarity=0.016 Sum_probs=199.5
Q ss_pred HHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcH---HHHHHHHHhhccccCCCCCHhHHHHHHHHHH
Q 009977 101 ILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLH---ERVLEMFHKIHPITREKPSLKAISTCLNLLI 177 (521)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 177 (521)
+...+.+.|++++|.++|++..+.| +..++..+...|...|+. ++|++.|++... . ++..+..+...+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~----~-~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD----T-SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----C-CHHHHHHHHHHHH
Confidence 3344445555555555555555443 122333444444445555 555555555532 1 3334444444333
Q ss_pred hcC-----CHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009977 178 ESN-----QVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLE---SAFEVLKEMKKSQMSYPNLITYSTLIDGLC 249 (521)
Q Consensus 178 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (521)
..+ ++++|...|++..+. + +...+..|...|...+..+ ++.+.+......+ +...+..+...|.
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFAN-G---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYR 152 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHT-T---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHH
Confidence 333 555666666665542 1 1125555555555544432 2344444444333 2335555666666
Q ss_pred hcCChHHHHHH----HHHHHhcCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 009977 250 KNGRFREAIEL----FEEMVSKDQILPDALTYNVLIDGFCRGG---KVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKE 322 (521)
Q Consensus 250 ~~g~~~~A~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 322 (521)
..+.++++... ++..... .|+ .+..+...|...| +.++|++.|++..+.| +++...+..+..+|...
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~~---~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g 226 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALNT---TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDA 226 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTTT---CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCG
T ss_pred cCCCcccCHHHHHHHHHHHHcC---CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCC
Confidence 66644443333 3333211 222 6667777777777 7777777777777766 44554445666666544
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC--
Q 009977 323 ----GKLQEAKEVFDEMKNFLLKPDTIGYTTLINC-F--CRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREG-- 393 (521)
Q Consensus 323 ----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 393 (521)
+++++|...|++.. . -+...+..+... | ...+++++|+..|++..+.| +...+..+...|. .|
T Consensus 227 ~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 227 TLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp GGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSS
T ss_pred CCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCC
Confidence 67777777777766 2 234555555555 3 35677788888887777765 5566666666666 44
Q ss_pred ---CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 009977 394 ---KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ----KGELEKAIELLRLMLCRGFLPHYATSNELLVRLCK----A 462 (521)
Q Consensus 394 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 462 (521)
++++|..+|++.. .| +...+..+...|.. ..++++|...|++..+.|. ......|...|.. .
T Consensus 299 ~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~ 371 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTK 371 (452)
T ss_dssp SCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBC
T ss_pred CCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCC
Confidence 7788888887776 32 45566666666654 3378888888888776542 3344456655553 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 009977 463 GMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKE 514 (521)
Q Consensus 463 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 514 (521)
.+.++|...|+...+.| .++.......+......++..+|.++.++.....
T Consensus 372 ~d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 372 PDPLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp CCHHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 47788888888777765 2222222222233334566777777777766653
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.76 E-value=1.1e-16 Score=137.42 Aligned_cols=196 Identities=17% Similarity=0.076 Sum_probs=88.1
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHH
Q 009977 200 PNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNV 279 (521)
Q Consensus 200 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 279 (521)
++...+..+...+.+.|++++|...|++..+..| .+...|..+..++...|++++|+..|++.++.. |.+...+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~ 78 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENP--QDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMV 78 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHH
Confidence 3444555555555556666666666665555554 355555555555556666666666665555542 334445555
Q ss_pred HHHHHHhC-----------CCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 009977 280 LIDGFCRG-----------GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYT 348 (521)
Q Consensus 280 l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 348 (521)
+..++... |++++|+..+++.++.. +.+...+..+..++...|++++|+..|+++.+.. .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 55555554 44444444444444432 2233344444444444444444444444444332 2344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 009977 349 TLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLE 403 (521)
Q Consensus 349 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 403 (521)
.+..+|...|++++|+..|++..+..+. +...+..+...+...|++++|...++
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4444444444444444444444443222 33334444444444444444444443
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.75 E-value=2.4e-16 Score=135.32 Aligned_cols=200 Identities=16% Similarity=0.011 Sum_probs=121.7
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHH
Q 009977 306 NPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNII 385 (521)
Q Consensus 306 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 385 (521)
+++...+..+...+.+.|++++|...|+++.+... .+...+..+...+.+.|++++|+..+++..+..+. +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 34455556666666666666666666666655321 23555666666666666666666666666655433 45556666
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009977 386 LGGLCRE-----------GKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNE 454 (521)
Q Consensus 386 ~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 454 (521)
...+... |++++|...+++..+..+. +...+..+..++...|++++|+..|+++++.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 6666666 7777777777777766443 56667777777777788888888887777655 66777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 009977 455 LLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELV 511 (521)
Q Consensus 455 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 511 (521)
+..++...|++++|...|+++++.. +.+...+..+..++.+.|++++|.+.|++.-
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777778888888888887777653 3345667777777777888888877777653
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.2e-16 Score=138.85 Aligned_cols=226 Identities=10% Similarity=0.013 Sum_probs=142.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--CC----cc
Q 009977 237 NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCN--PN----VF 310 (521)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~ 310 (521)
....|..++..+...|++++|+..|+++.+.. .+...+..+..++...|++++|...++++.+.... ++ ..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 34566777777777777777777777777663 55667777777777777777777777777654311 11 35
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 009977 311 NYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLC 390 (521)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (521)
++..++..+...|++++|...|+++... .|+. ..+...|++++|...++++....+. +...+..+...+.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHH
Confidence 6666677777777777777777776653 3342 2344556666666666666655322 3455666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009977 391 REGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAI 470 (521)
Q Consensus 391 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 470 (521)
..|++++|...++++...... +...+..+...+...|++++|+..++++++.. +.+...+..+..++...|++++|..
T Consensus 151 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 666666666666666654332 45566666666666666666666666666431 2245556666666666666666666
Q ss_pred HHHHHHH
Q 009977 471 ALFGLVE 477 (521)
Q Consensus 471 ~~~~~~~ 477 (521)
.++++.+
T Consensus 229 ~~~~a~~ 235 (258)
T 3uq3_A 229 TLDAART 235 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.75 E-value=2e-16 Score=151.70 Aligned_cols=379 Identities=11% Similarity=0.031 Sum_probs=251.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCc---hHHHHHHHHhhhccCCcCHHHHHHHHHHH
Q 009977 64 AAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKF---EAVDAVLRQMTYETCKFHEGIFLNLMKHF 140 (521)
Q Consensus 64 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (521)
.+...+.+.|++++|++.|+++.+. | +...+..+...+...|+. ++|..+|++..+. +...+..+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-T---CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 4677788899999999999998654 2 444556677777778888 8999999998854 455667777755
Q ss_pred HccC-----cHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHH---HHHHHHHHhhhcCCCCCcHHHHHHHHHHH
Q 009977 141 SNCS-----LHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVD---LAQNFLKYSNQHLRLKPNTCIFNILIKHH 212 (521)
Q Consensus 141 ~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 212 (521)
...| ++++|++.|++... . -+..++..+...|...+..+ ++...+...... .+...+..+...|
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~--~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~----g~~~a~~~Lg~~y 151 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFA--N--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA----GYPEAGLAQVLLY 151 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHH--T--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH----TCTTHHHHHHHHH
T ss_pred HhCCCCCCcCHHHHHHHHHHHHH--C--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC----CCHHHHHHHHHHH
Confidence 5554 88999999999864 2 22337777777887766543 344455444322 2355778888888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC--
Q 009977 213 CKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG---RFREAIELFEEMVSKDQILPDALTYNVLIDGFCRG-- 287 (521)
Q Consensus 213 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 287 (521)
...+.++++.+....+.+.... .+...+..+...|...| +.++|++.|++..+.+ +++...+..+...|...
T Consensus 152 ~~~~~~~~~~~~a~~~~~~a~~-~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 152 RTQGTYDQHLDDVERICKAALN-TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDATL 228 (452)
T ss_dssp HHHTCGGGGHHHHHHHHHHHTT-TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGGG
T ss_pred HcCCCcccCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCC
Confidence 8888665555443333221111 23338888999999999 9999999999998874 56676667788877655
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCcchHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----
Q 009977 288 --GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNG-F--CKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAG---- 358 (521)
Q Consensus 288 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 358 (521)
+++++|..+|++.. . .++..+..|..+ + ...+++++|...|++..+.| +...+..+...|. .|
T Consensus 229 ~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~ 300 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVP 300 (452)
T ss_dssp SSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSC
T ss_pred CCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCC
Confidence 79999999999987 3 466778888887 4 56899999999999998865 6778888888887 55
Q ss_pred -CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc----CCC
Q 009977 359 -RVDEALELLKEMKERGCKADIVTFNIILGGLCR----EGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ----KGE 429 (521)
Q Consensus 359 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 429 (521)
++++|+..|++.. .| +...+..+...|.. ..+.++|..+|++..+.|. ......|...|.. ..+
T Consensus 301 ~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d 373 (452)
T 3e4b_A 301 ADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPD 373 (452)
T ss_dssp CCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCC
T ss_pred CCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCC
Confidence 9999999999888 43 67788888877776 3499999999999988764 3455666666654 468
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 430 LEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVE 477 (521)
Q Consensus 430 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 477 (521)
.++|..+|+...+.|.. +.......+......++.++|..+.++..+
T Consensus 374 ~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 374 PLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999999977632 222221122222223345666666665543
No 40
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.74 E-value=2.9e-13 Score=134.01 Aligned_cols=436 Identities=9% Similarity=0.020 Sum_probs=302.6
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCc---HHHHHHH
Q 009977 76 QCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSL---HERVLEM 152 (521)
Q Consensus 76 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~ 152 (521)
.+-+..|+..+..+ +.|...|..++..+.+.+.++.+..+|+.+... .|.....|...+..-.+.|. ++.+.++
T Consensus 49 ~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp SCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 33444555555554 578999999999999999999999999999987 47778888888888888888 9999999
Q ss_pred HHhhccccCCCCCHhHHHHHHHHHHhcCCH--------HHHHHHHHHhhhcCCC-CCc-HHHHHHHHHHHHh--------
Q 009977 153 FHKIHPITREKPSLKAISTCLNLLIESNQV--------DLAQNFLKYSNQHLRL-KPN-TCIFNILIKHHCK-------- 214 (521)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~-------- 214 (521)
|++........|+...|...+......++. +...++|+.++...|. .++ ...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 999874332348888888777666554443 3445788887776676 554 5688887776542
Q ss_pred -cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-------------cCChHHHHHHHHHHHhcC-C----CC----
Q 009977 215 -RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCK-------------NGRFREAIELFEEMVSKD-Q----IL---- 271 (521)
Q Consensus 215 -~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~~~-~----~~---- 271 (521)
.++++.+..+|+++...... .-..+|......-.. ..+++.|...+.++.... + .+
T Consensus 206 eq~~~~~~R~iy~raL~iP~~-~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMD-CLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCS-SHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHhHHHHHHHHHHHHHhCccH-HHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 34578889999998853221 122334222111101 122344555554432110 0 01
Q ss_pred -------C-----C---HHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 009977 272 -------P-----D---ALTYNVLIDGFCRGG-------KVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAK 329 (521)
Q Consensus 272 -------~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 329 (521)
| + ...|...+..--..+ ..+.+..+|++++..- +.....|...+..+...|+.++|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHH
Confidence 1 1 134444444322222 1344667888888763 667888988899899999999996
Q ss_pred -HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CC------------cHhHHHHHHH
Q 009977 330 -EVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGC---------KA------------DIVTFNIILG 387 (521)
Q Consensus 330 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~------------~~~~~~~l~~ 387 (521)
++|++.... ++.+...|...+....+.|++++|.++|+.+.+... .| ....|...+.
T Consensus 364 r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 364 TKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 999998874 334677788888888899999999999999886410 12 1236777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 009977 388 GLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQK-GELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAE 466 (521)
Q Consensus 388 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 466 (521)
...+.|+.+.|..+|.++.+.........|...+..-.+. ++.+.|..+|+..++. +.-+...+...+......|+.+
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 8888899999999999998761222344554443333344 4599999999999975 4446777778888888999999
Q ss_pred HHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccCc
Q 009977 467 DAAIALFGLVEMGFKP--ESDSWALLVELICRGRKLLFAFELLDELVIKESGTI 518 (521)
Q Consensus 467 ~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 518 (521)
.|..+|++.+....++ ....|..++..-.+.|+.+.+..+.+++.+..|.+.
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 9999999998764222 236788888888889999999999999999887653
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.73 E-value=2e-15 Score=134.90 Aligned_cols=233 Identities=10% Similarity=0.020 Sum_probs=101.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhc
Q 009977 280 LIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD--TIGYTTLINCFCRA 357 (521)
Q Consensus 280 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 357 (521)
....+...|++++|+..++++.+.. +.+...+..++.+|...|++++|+..++++.+....++ ...|..+...+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3334444444444444444444432 22333444444444444444444444444443211111 22244444444445
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHH
Q 009977 358 GRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELL 437 (521)
Q Consensus 358 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 437 (521)
|++++|+..|++..+..+. +..++..+...|...|++++|...++++.+.... +...+..+...+...+++++|...|
T Consensus 88 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555544443322 3344445555555555555555555544443221 3334444441222233555555555
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHccCcHHHHHHH
Q 009977 438 RLMLCRGFLP-HYATSNELLVRLCKAGM---AEDAAIALFGLVEMG-FKPE------SDSWALLVELICRGRKLLFAFEL 506 (521)
Q Consensus 438 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~A~~~ 506 (521)
+++++. .| +...+..+..++...|+ +++|...++++.+.. -.|+ ...|..+...|...|++++|.+.
T Consensus 166 ~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 166 VKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555432 22 23444444444444444 444555554444310 0111 13444455555555555555555
Q ss_pred HHHHHHcCccC
Q 009977 507 LDELVIKESGT 517 (521)
Q Consensus 507 ~~~m~~~~~~~ 517 (521)
|+++++.+|++
T Consensus 244 ~~~al~~~p~~ 254 (272)
T 3u4t_A 244 WKNILALDPTN 254 (272)
T ss_dssp HHHHHHHCTTC
T ss_pred HHHHHhcCccH
Confidence 55555554443
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.2e-15 Score=133.37 Aligned_cols=226 Identities=11% Similarity=0.053 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCC----HHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQ-ILPD----ALT 276 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~ 276 (521)
...+..++..+...|++++|...|+++.+.. .+...|..++.++...|++++|++.++++.+..+ ..++ ...
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 4466667777777777777777777776655 3556667777777777777777777777665421 1111 456
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 009977 277 YNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCR 356 (521)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 356 (521)
+..+...+...|++++|...++++.+.. |+ ...+...|++++|...++.+.... ..+...+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 6677777777777777777777776642 33 234555666777777777766532 1134556666667777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHH
Q 009977 357 AGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIEL 436 (521)
Q Consensus 357 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 436 (521)
.|++++|+..++++.+.... +..++..+...+...|++++|...++++.+.... +...+..+..++...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 77777777777777665433 5666777777777777777777777777665432 456666777777777777777777
Q ss_pred HHHHHH
Q 009977 437 LRLMLC 442 (521)
Q Consensus 437 ~~~~~~ 442 (521)
++++.+
T Consensus 230 ~~~a~~ 235 (258)
T 3uq3_A 230 LDAART 235 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777664
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.73 E-value=1.7e-15 Score=140.68 Aligned_cols=228 Identities=12% Similarity=0.071 Sum_probs=121.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGR-FREAIELFEEMVSKDQILPDALTYNVLID 282 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (521)
+|+.+..++.+.|++++|++.++++....+ .+..+|+.+..++...|+ +++|+..|++++..+ +-+...|..+..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P--~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g~ 174 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNA--ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCc--cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 455555555555666666666665555554 355555555555555554 666666666555542 334555555555
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHH
Q 009977 283 GFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCR-AGRVD 361 (521)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 361 (521)
++...|++++|+..|+++++.. +.+..+|..+..++...|++++|+..++++.+.... +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 5555566666666665555544 344555555555555555555555555555553221 35555555555555 33334
Q ss_pred HH-----HHHHHHHHHcCCCCcHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCC------
Q 009977 362 EA-----LELLKEMKERGCKADIVTFNIILGGLCREG--KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKG------ 428 (521)
Q Consensus 362 ~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 428 (521)
+| +..+++.++..+. +...|..+...+...| ++++|++.+.++ +.. ..+...+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 44 3555555554333 4455555555555555 355555555555 222 123445555555555442
Q ss_pred ---CHHHHHHHHHHH
Q 009977 429 ---ELEKAIELLRLM 440 (521)
Q Consensus 429 ---~~~~a~~~~~~~ 440 (521)
..++|+++++++
T Consensus 330 ~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 330 KEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 135566666665
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.72 E-value=2.1e-14 Score=128.29 Aligned_cols=225 Identities=11% Similarity=0.006 Sum_probs=144.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCcch
Q 009977 236 PNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCR----GGKVDRAKKIMEFMKNNGCNPNVFN 311 (521)
Q Consensus 236 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 311 (521)
.+..++..+...+...|++++|++.|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 35566667777777777777777777777653 234566667777777 777777777777776654 5556
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHhHHH
Q 009977 312 YTTLMNGFCK----EGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCR----AGRVDEALELLKEMKERGCKADIVTFN 383 (521)
Q Consensus 312 ~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 383 (521)
+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 6667777776 777777777777766642 55666666666666 677777777777666654 445556
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009977 384 IILGGLCR----EGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ----KGELEKAIELLRLMLCRGFLPHYATSNEL 455 (521)
Q Consensus 384 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 455 (521)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..++++.+.+ | ...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHH
Confidence 66666665 666666666666666553 34555556666666 666666666666666542 2 4455556
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCC
Q 009977 456 LVRLCK----AGMAEDAAIALFGLVEMG 479 (521)
Q Consensus 456 ~~~~~~----~g~~~~a~~~~~~~~~~~ 479 (521)
...|.. .+++++|...|++..+.+
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 666665 666666666666666553
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.72 E-value=2.1e-15 Score=134.81 Aligned_cols=233 Identities=11% Similarity=0.011 Sum_probs=146.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--HHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD--ALTYNVLI 281 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~ 281 (521)
.+...+..+...|++++|+..|+++.+..+ .+...+..++.++...|++++|++.++++.... ..++ ...|..+.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY--NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NATKAKSADFEYYG 81 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC--CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-CchhHHHHHHHHHH
Confidence 344556667777777777777777776665 345566777777777777777777777776632 1111 33466777
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 009977 282 DGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVD 361 (521)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 361 (521)
..+...|++++|++.++++.+.. +.+..++..++..|...|++++|...+++..+.. ..+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777654 4455667777777777777777777777766542 223555665552333345777
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CccC------HHHHHHHHHHHHcCCCHH
Q 009977 362 EALELLKEMKERGCKADIVTFNIILGGLCREGK---IEEALGMLEKLWYDG-IYLN------KASYRIVLNFSCQKGELE 431 (521)
Q Consensus 362 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~ 431 (521)
+|+..|+++.+..+. +...+..+...+...|+ +++|...++++.+.. ..|+ ...|..+...|...|+++
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 777777777765432 35556666666666666 666666666655431 1122 134555666666666666
Q ss_pred HHHHHHHHHHH
Q 009977 432 KAIELLRLMLC 442 (521)
Q Consensus 432 ~a~~~~~~~~~ 442 (521)
+|...++++++
T Consensus 239 ~A~~~~~~al~ 249 (272)
T 3u4t_A 239 KADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66666666664
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.71 E-value=3.3e-15 Score=138.69 Aligned_cols=250 Identities=9% Similarity=-0.025 Sum_probs=209.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCCcchHHHH
Q 009977 237 NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGK-VDRAKKIMEFMKNNGCNPNVFNYTTL 315 (521)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 315 (521)
+...|..+...+...|++++|++.|++++... +-+...|+.+..++...|+ +++|+..|+++++.. +.+..+|..+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 45678888889999999999999999999874 6678899999999999996 999999999999986 6678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh-cCC
Q 009977 316 MNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCR-EGK 394 (521)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~ 394 (521)
..++...|++++|+..|+++.+.... +...|..+..++...|++++|+..++++++..+. +...|+.+..++.. .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999985432 6889999999999999999999999999998765 78899999999999 666
Q ss_pred HHHH-----HHHHHHHHHCCCccCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 009977 395 IEEA-----LGMLEKLWYDGIYLNKASYRIVLNFSCQKG--ELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAG---- 463 (521)
Q Consensus 395 ~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---- 463 (521)
.++| +..++++....+. +...|..+...+...| ++++|++.++++ + .-..+...+..++.+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 5888888887544 6778999888888888 689999999888 3 22337778888999998864
Q ss_pred -----CHHHHHHHHHHH-HHCCCCCCH-HHHHHHHHHHHc
Q 009977 464 -----MAEDAAIALFGL-VEMGFKPES-DSWALLVELICR 496 (521)
Q Consensus 464 -----~~~~a~~~~~~~-~~~~~~~~~-~~~~~l~~~~~~ 496 (521)
.+++|..+++++ .+. .|.. ..|..+...+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHH
Confidence 358999999998 665 4544 566666665543
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.71 E-value=1.5e-15 Score=135.91 Aligned_cols=220 Identities=13% Similarity=-0.005 Sum_probs=105.8
Q ss_pred cCChHHHHHHHHHHHhCCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHH
Q 009977 215 RGTLESAFEVLKEMKKSQMSY--PNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDR 292 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 292 (521)
.|++++|+..|+++.+..+.. .+..+|..++..+...|++++|+..|+++.... +.+...+..+...+...|++++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHHH
Confidence 345555555555555442210 134445555555555566666666665555542 3345555555555555566666
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 293 AKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKE 372 (521)
Q Consensus 293 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 372 (521)
|.+.++++.+.. +.+..++..++.+|...|++++|...++++.+. .|+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 665555555543 334445555555555555555555555555542 22222222222333444555556555555544
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCcc---CHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 009977 373 RGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYL---NKASYRIVLNFSCQKGELEKAIELLRLML 441 (521)
Q Consensus 373 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (521)
.... +...+ .++..+...++.++|...++++....... +...+..+...|...|++++|...|++++
T Consensus 173 ~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 173 KSDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3221 22222 24444444555555555555544331110 12334444444445555555555555544
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=7.2e-14 Score=124.80 Aligned_cols=224 Identities=12% Similarity=-0.000 Sum_probs=168.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCHHH
Q 009977 201 NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCK----NGRFREAIELFEEMVSKDQILPDALT 276 (521)
Q Consensus 201 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 276 (521)
+..++..+...+...|++++|...|++..+. .+..++..+...+.. .+++++|++.|++..+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHH
Confidence 4566777777777788888888888877762 355667777777777 888888888888877652 5667
Q ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 009977 277 YNVLIDGFCR----GGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK----EGKLQEAKEVFDEMKNFLLKPDTIGYT 348 (521)
Q Consensus 277 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 348 (521)
+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 7777777777 788888888888877764 56677777777877 788888888888877743 566677
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCccCHHHHHHH
Q 009977 349 TLINCFCR----AGRVDEALELLKEMKERGCKADIVTFNIILGGLCR----EGKIEEALGMLEKLWYDGIYLNKASYRIV 420 (521)
Q Consensus 349 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 420 (521)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+. ...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHH
Confidence 77777777 788888888888877764 45677777778888 8888888888888877642 5667777
Q ss_pred HHHHHc----CCCHHHHHHHHHHHHHCC
Q 009977 421 LNFSCQ----KGELEKAIELLRLMLCRG 444 (521)
Q Consensus 421 ~~~~~~----~g~~~~a~~~~~~~~~~~ 444 (521)
...|.. .+++++|...|+++.+.+
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 777777 788888888888887643
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.69 E-value=1.2e-15 Score=136.54 Aligned_cols=246 Identities=13% Similarity=-0.006 Sum_probs=121.1
Q ss_pred CCHHHHHHHHHHhhhcCCCC--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009977 180 NQVDLAQNFLKYSNQHLRLK--PNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREA 257 (521)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 257 (521)
|++++|...++.+++..... .+..++..++..+...|++++|...|+++.+..+ .+..+|..++..+...|++++|
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP--DMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHccCHHHH
Confidence 44444555554444321111 1234555555555556666666666655555544 3455555555556666666666
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 258 IELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
++.|+++.... +.+...+..+..++...|++++|...++++.+.. |+.......+..+...|++++|...+.+...
T Consensus 97 ~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 66666555542 2334555555555666666666666665555542 2222333333344445566666666655444
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---cHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCH
Q 009977 338 FLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKA---DIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNK 414 (521)
Q Consensus 338 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 414 (521)
.. .++...+. ++..+...++.++|+..++...+..... +...+..+...|...|++++|...++++....+. +
T Consensus 173 ~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~- 248 (275)
T 1xnf_A 173 KS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-N- 248 (275)
T ss_dssp HS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-T-
T ss_pred cC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-h-
Confidence 21 12222222 4444455555556666655554332110 1345566666666666666666666666654321 1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHH
Q 009977 415 ASYRIVLNFSCQKGELEKAIELL 437 (521)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~a~~~~ 437 (521)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 122233444555555555544
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.69 E-value=3e-14 Score=125.59 Aligned_cols=96 Identities=14% Similarity=-0.017 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 009977 203 CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLID 282 (521)
Q Consensus 203 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (521)
..+..++..+...|++++|.+.|+++.+..+ .+...+..++..+...|++++|++.++++.+.. +.+...+..+..
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~ 113 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDP--SSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHH
Confidence 3444455555555555555555555544433 234444444555555555555555555444431 223344444444
Q ss_pred HHHhCCCHHHHHHHHHHHHH
Q 009977 283 GFCRGGKVDRAKKIMEFMKN 302 (521)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~ 302 (521)
.+...|++++|.++++++.+
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHHHHHHHHHHh
Confidence 44444444444444444443
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.69 E-value=2.7e-14 Score=125.94 Aligned_cols=198 Identities=14% Similarity=0.007 Sum_probs=93.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHH
Q 009977 98 YATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLI 177 (521)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 177 (521)
|..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|++.|+++... .+.+...+..+...+.
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHH
Confidence 3333344444444444444444444332 223334444444444444444444444443321 1122333333444444
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHH
Q 009977 178 ESNQVDLAQNFLKYSNQHLRLKP-NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFRE 256 (521)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 256 (521)
..|++++|...++++.+ .+..| +...+..++..+...|++++|.+.|+++.+..+ .+...+..++..+...|++++
T Consensus 117 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR--NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCCHHH
Confidence 44444444444444432 11122 334555555555555666666666555555443 345555555555666666666
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 257 AIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 257 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
|...++++.+. .+.+...+..+...+...|++++|.+.++.+.+.
T Consensus 194 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666655543 2334445555555555556666666665555554
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.69 E-value=3.7e-15 Score=130.65 Aligned_cols=200 Identities=18% Similarity=0.134 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLI 281 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 281 (521)
...+..++..+...|++++|...|+++.+..+ .+...+..++..+...|++++|++.++++.... +.+...+..+.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la 98 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK--EDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAG 98 (243)
T ss_dssp -------------------CCTTHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHH
Confidence 34555556666666666666666666665544 355566666666666666666666666665542 33455566666
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 009977 282 DGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVD 361 (521)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 361 (521)
..+...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+.. ..+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 66666666666666666665543 3344555556666666666666666666655432 123555555555666666666
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 362 EALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYD 408 (521)
Q Consensus 362 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 408 (521)
+|+..++++.+.... +..++..+...|...|++++|...++++.+.
T Consensus 177 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666666665554322 4445555555666666666666666655554
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.68 E-value=4.7e-14 Score=121.88 Aligned_cols=201 Identities=13% Similarity=-0.009 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLI 281 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 281 (521)
...+..++..+...|++++|.+.|+++.+..+ .+...|..++..+...|++++|.+.++++.... +.+...+..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~ 83 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDP--KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHH
Confidence 33445555555555555555555555554443 344455555555555555555555555554432 33444555555
Q ss_pred HHHHhC-CCHHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 009977 282 DGFCRG-GKVDRAKKIMEFMKNNGCNP-NVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGR 359 (521)
Q Consensus 282 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 359 (521)
..+... |++++|...++++.+.+..| +...+..++.++...|++++|...++++.+... .+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCC
Confidence 555555 55555555555555411111 133444555555555555555555555544321 134455555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 360 VDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWY 407 (521)
Q Consensus 360 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 407 (521)
+++|...++++.+.....+...+..+...+...|+.+++..+++.+..
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555555555443212444445555555555555555555555544
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.68 E-value=4.8e-15 Score=129.95 Aligned_cols=200 Identities=12% Similarity=0.077 Sum_probs=129.6
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHH
Q 009977 59 FISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMK 138 (521)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (521)
...|..+...+...|++++|+..|+++.... +.+...+..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp -------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4466777788888999999999999987543 5567888888899999999999999999988775 456777888888
Q ss_pred HHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCCh
Q 009977 139 HFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTL 218 (521)
Q Consensus 139 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 218 (521)
.|...|++++|++.|+++... .+.+...+..+...+...|++++|...++++.+. .+.+...+..++..+...|++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCH
Confidence 888888888888888887542 2334556666666677777777777777766542 233455666666677777777
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 219 ESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
++|...|+++.+..+ .+..++..++.++...|++++|.+.++++.+.
T Consensus 176 ~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQDP--GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777776666554 45566666666667777777777777666654
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.68 E-value=2.8e-14 Score=123.30 Aligned_cols=203 Identities=12% Similarity=0.013 Sum_probs=109.7
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHH
Q 009977 94 NNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCL 173 (521)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 173 (521)
+...|..++..+...|++++|...++++.+.. +.+...+..+...|...|++++|++.|+++... .+.+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHH
Confidence 34455555666666666666666666665543 334555555666666666666666666655421 122344445555
Q ss_pred HHHHhc-CCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009977 174 NLLIES-NQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG 252 (521)
Q Consensus 174 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 252 (521)
..+... |++++|...++.+.+....+.+...+..++..+...|++++|...++++.+..+ .+...+..++..+...|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP--QFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHcC
Confidence 555555 555555555555543111122244555555666666666666666666555443 34555555566666666
Q ss_pred ChHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 253 RFREAIELFEEMVSKDQIL-PDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 253 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
++++|...++++.... + .+...+..+...+...|+.+.+..+++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRV--EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 6666666666655442 2 34444555555555556666666555555543
No 56
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=9.5e-17 Score=159.06 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=95.5
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHH
Q 009977 308 NVFNYTTLMNGFCKEGKLQEAKEVFDEMKN---FLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNI 384 (521)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 384 (521)
-..+|++|+.+|++.|++++|.++|++|.+ .|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345788888888888888888888877653 46788888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc
Q 009977 385 ILGGLCREGK-IEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ 426 (521)
Q Consensus 385 l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (521)
+|.++++.|+ .++|.++|++|...|+.||..+|+.++.++.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 8888888886 46788888888888888888888887765443
No 57
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=1e-16 Score=158.87 Aligned_cols=117 Identities=14% Similarity=0.195 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHH
Q 009977 238 LITYSTLIDGLCKNGRFREAIELFEEMVSK--DQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTL 315 (521)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 315 (521)
..+|+++|.+|++.|+.++|.++|++|.+. .|..||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 345666666666666666666666555421 145666666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009977 316 MNGFCKEGK-LQEAKEVFDEMKNFLLKPDTIGYTTLINCF 354 (521)
Q Consensus 316 ~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 354 (521)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 666666665 355666666666666666666666655433
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.67 E-value=5.1e-15 Score=140.59 Aligned_cols=300 Identities=15% Similarity=0.033 Sum_probs=165.1
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CC-CCCH
Q 009977 201 NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN--LITYSTLIDGLCKNGRFREAIELFEEMVSKD---QI-LPDA 274 (521)
Q Consensus 201 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~ 274 (521)
....+......+...|++++|...|+++.+..+..+. ..+|..++..+...|++++|+..++++.... +. +...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3344445555555555555555555555554432111 2345555555555666666665555543320 00 1113
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC----cchHHHHHHHHHhcCC--------------------HHHHH
Q 009977 275 LTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCN-PN----VFNYTTLMNGFCKEGK--------------------LQEAK 329 (521)
Q Consensus 275 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~A~ 329 (521)
.++..+...+...|++++|...+++..+.... ++ ..++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 34555555556666666666665555432100 01 2245556666666666 66666
Q ss_pred HHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Cc----HhHHHHHHHHHHhcCCHHHHH
Q 009977 330 EVFDEMKNF----LLKP-DTIGYTTLINCFCRAGRVDEALELLKEMKERGCK-AD----IVTFNIILGGLCREGKIEEAL 399 (521)
Q Consensus 330 ~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~ 399 (521)
..+.+.... +..+ ...++..+...|...|++++|+..+++..+.... ++ ..++..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 666554321 1011 1345666666777777777777777766543110 11 235667777777777888877
Q ss_pred HHHHHHHHCC----Ccc-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 009977 400 GMLEKLWYDG----IYL-NKASYRIVLNFSCQKGELEKAIELLRLMLCR----GFLP-HYATSNELLVRLCKAGMAEDAA 469 (521)
Q Consensus 400 ~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~ 469 (521)
..+++..... ..+ ...++..+...|...|++++|...++++.+. +-.+ ...++..+...+...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7777765431 111 1345667777777788888888887777642 1111 2456667777777888888888
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHHHccCcH
Q 009977 470 IALFGLVEM----GFKPE-SDSWALLVELICRGRKL 500 (521)
Q Consensus 470 ~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~ 500 (521)
..+++..+. +..+. ..++..+...+...|+.
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 887776542 21111 24555666666666654
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.67 E-value=4.9e-15 Score=140.74 Aligned_cols=205 Identities=16% Similarity=0.062 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcC----HHHHHHHHHHHHccCcHHHHHHHHHhhccccCCC----CCHh
Q 009977 96 ATYATILDKLARYKKFEAVDAVLRQMTYETCKFH----EGIFLNLMKHFSNCSLHERVLEMFHKIHPITREK----PSLK 167 (521)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~ 167 (521)
..+......+...|++++|...|++..+.+ +.+ ..++..+...|...|++++|+..|++........ ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 334444445555555555555555554442 112 1234444455555555555555554432211000 0112
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC----cHHHHHHHHHHHHhcCC--------------------hHHHHH
Q 009977 168 AISTCLNLLIESNQVDLAQNFLKYSNQHLRLKP----NTCIFNILIKHHCKRGT--------------------LESAFE 223 (521)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~--------------------~~~A~~ 223 (521)
++..+...+...|++++|...++++.+...-.+ ...++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 233334444444444444444444332100000 12345555555555555 555555
Q ss_pred HHHHHHhC----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhCCCHHHHHH
Q 009977 224 VLKEMKKS----QMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD----ALTYNVLIDGFCRGGKVDRAKK 295 (521)
Q Consensus 224 ~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~ 295 (521)
.+++.... +.......++..++..+...|++++|+..+++........++ ..++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 55544321 000011234455555555555555555555555432111111 1244444555555555555555
Q ss_pred HHHHHH
Q 009977 296 IMEFMK 301 (521)
Q Consensus 296 ~~~~~~ 301 (521)
.+++..
T Consensus 249 ~~~~al 254 (406)
T 3sf4_A 249 YYKKTL 254 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.65 E-value=5.1e-15 Score=140.93 Aligned_cols=274 Identities=16% Similarity=0.073 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCCC
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNL----ITYSTLIDGLCKNGRFREAIELFEEMVSKD----QILPD 273 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~ 273 (521)
...+..+...+...|++++|...|+++.+..+. +. ..|..++..+...|++++|+..++++.... ..+..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE--DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 445666778888888999998888888887653 33 467788888888888888888888876531 01223
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCCCcchHHHHHHHHHhcCC-----------------HHHHHHH
Q 009977 274 ALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG-----CNPNVFNYTTLMNGFCKEGK-----------------LQEAKEV 331 (521)
Q Consensus 274 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~ 331 (521)
...+..+...|...|++++|...++++.+.. .+....++..+...|...|+ +++|...
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 4567777778888888888888887776531 01123456666777777777 6667666
Q ss_pred HHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Cc----HhHHHHHHHHHHhcCCHHHHHHH
Q 009977 332 FDEMKNF----LLKP-DTIGYTTLINCFCRAGRVDEALELLKEMKERGCK-AD----IVTFNIILGGLCREGKIEEALGM 401 (521)
Q Consensus 332 ~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~ 401 (521)
+++..+. +..+ ....+..+...|...|++++|+..+++..+.... ++ ..++..+...|...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 6654331 0001 1234555556666666666666666665543110 01 11455555566666666666666
Q ss_pred HHHHHHCCCc-----cCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 009977 402 LEKLWYDGIY-----LNKASYRIVLNFSCQKGELEKAIELLRLMLCR----GFLP-HYATSNELLVRLCKAGMAEDAAIA 471 (521)
Q Consensus 402 ~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 471 (521)
++++...... ....++..+...|...|++++|...++++++. +..+ ...++..+...|...|++++|...
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 6655543111 01234455555555566666666666555532 0000 123444455555555555555555
Q ss_pred HHHHHH
Q 009977 472 LFGLVE 477 (521)
Q Consensus 472 ~~~~~~ 477 (521)
+++..+
T Consensus 366 ~~~al~ 371 (411)
T 4a1s_A 366 AEQHLQ 371 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.65 E-value=9.2e-15 Score=139.15 Aligned_cols=275 Identities=16% Similarity=0.064 Sum_probs=202.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcH----HHHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCCCH
Q 009977 167 KAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNT----CIFNILIKHHCKRGTLESAFEVLKEMKKSQ----MSYPNL 238 (521)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~ 238 (521)
..+..+...+...|++++|...++++++.. +.+. .++..+...|...|++++|...+++..... ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345566778888999999999999887642 2232 478888899999999999999999876531 111345
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHhCCC-----------------HHHHHHHH
Q 009977 239 ITYSTLIDGLCKNGRFREAIELFEEMVSKDQ----ILPDALTYNVLIDGFCRGGK-----------------VDRAKKIM 297 (521)
Q Consensus 239 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 297 (521)
.++..+...+...|++++|+..++++..... .+....++..+...|...|+ +++|.+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 6778888899999999999999988865411 12234577888888888999 89999888
Q ss_pred HHHHHc----CC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 009977 298 EFMKNN----GC-NPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK-PD----TIGYTTLINCFCRAGRVDEALELL 367 (521)
Q Consensus 298 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~ 367 (521)
++..+. +. +....++..+...|...|++++|...+++..+.... .+ ...+..+...|...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 877652 11 112346778888899999999999999887653111 12 236778888899999999999999
Q ss_pred HHHHHcCCC-----CcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----ccCHHHHHHHHHHHHcCCCHHHHHHHH
Q 009977 368 KEMKERGCK-----ADIVTFNIILGGLCREGKIEEALGMLEKLWYDGI-----YLNKASYRIVLNFSCQKGELEKAIELL 437 (521)
Q Consensus 368 ~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~ 437 (521)
++..+.... ....++..+...|...|++++|...+++...... .....++..+...|...|++++|...+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 887754211 1145677888889999999999999998876411 112346777888889999999999999
Q ss_pred HHHHHC
Q 009977 438 RLMLCR 443 (521)
Q Consensus 438 ~~~~~~ 443 (521)
+++.+.
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998854
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.64 E-value=6.1e-12 Score=124.65 Aligned_cols=427 Identities=10% Similarity=0.030 Sum_probs=294.7
Q ss_pred CCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC---chHHHHHHHHhhhcc-CCcCHHH
Q 009977 57 SRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKK---FEAVDAVLRQMTYET-CKFHEGI 132 (521)
Q Consensus 57 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~ 132 (521)
.+..+|..++..+.+.+.++.|..+|++++.. +|.....|...+..-.+.++ ++.+..+|++.+... .+|+...
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 36778999999999999999999999999865 47788889999999889998 999999999999764 1378888
Q ss_pred HHHHHHHHHccCcH--------HHHHHHHHhhccccCC-CC-CHhHHHHHHHHHH---------hcCCHHHHHHHHHHhh
Q 009977 133 FLNLMKHFSNCSLH--------ERVLEMFHKIHPITRE-KP-SLKAISTCLNLLI---------ESNQVDLAQNFLKYSN 193 (521)
Q Consensus 133 ~~~l~~~~~~~g~~--------~~a~~~~~~~~~~~~~-~~-~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~ 193 (521)
|...+....+.++. +.+.++|++.....+. .+ +...|...+.... ..++++.+..+|+.++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88777665554432 4455788876544444 33 4466777666543 2345788899999887
Q ss_pred hcCCCCC--cHHHHHHHHHHHHh-------------cCChHHHHHHHHHHHhC--CCCC--------------C--C---
Q 009977 194 QHLRLKP--NTCIFNILIKHHCK-------------RGTLESAFEVLKEMKKS--QMSY--------------P--N--- 237 (521)
Q Consensus 194 ~~~~~~~--~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~~--~~~~--------------~--~--- 237 (521)
. ++. -..+|......-.. ..+++.|...+.++... +... | +
T Consensus 222 ~---iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~ 298 (679)
T 4e6h_A 222 C---QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYD 298 (679)
T ss_dssp T---SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCC
T ss_pred h---CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhH
Confidence 4 322 12344322221111 12344455555553211 1100 0 0
Q ss_pred ---HHHHHHHHHHHHhcC-------ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHcCCC
Q 009977 238 ---LITYSTLIDGLCKNG-------RFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAK-KIMEFMKNNGCN 306 (521)
Q Consensus 238 ---~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~ 306 (521)
...|...+.---..+ ..+.+..+|++++.. .+.+...|...+..+...|+.++|. ++|++.... ++
T Consensus 299 ~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P 375 (679)
T 4e6h_A 299 VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IP 375 (679)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CT
T ss_pred HHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CC
Confidence 234555554333322 124466789998876 4567788888888888899999996 999999875 35
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHH
Q 009977 307 PNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFL---------LKPD------------TIGYTTLINCFCRAGRVDEALE 365 (521)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~------------~~~~~~l~~~~~~~~~~~~A~~ 365 (521)
.+...+...+....+.|+++.|.++|+.+.... -.|+ ...|...+....+.|..+.|..
T Consensus 376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 566667788888999999999999999887531 0131 3367788888888899999999
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 009977 366 LLKEMKERGCKADIVTFNIILGGLCRE-GKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRG 444 (521)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (521)
+|..+.+.........|...+..-.+. ++.+.|.++|+...+. ..-+...|...+......|+.+.|..+|++++...
T Consensus 456 vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 456 IFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 999998761112334444444333444 4589999999999886 22356677788888888999999999999999653
Q ss_pred CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009977 445 FLP--HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELI 494 (521)
Q Consensus 445 ~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 494 (521)
..+ ....|..++..-.+.|+.+.+..+.+++.+. .|+......+++-|
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 222 4567888888888999999999999999876 35544444444443
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.64 E-value=1.1e-14 Score=134.29 Aligned_cols=278 Identities=11% Similarity=0.051 Sum_probs=142.5
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHhhhcc-----CCcCHHH
Q 009977 62 HGAAISLIKCEKEPQCALEIFNTVSEQKGFNHN----NATYATILDKLARYKKFEAVDAVLRQMTYET-----CKFHEGI 132 (521)
Q Consensus 62 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 132 (521)
+......+...|++++|+..|++++... +.+ ...+..+...+...|++++|...+++..+.. .+....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3345566777888888888888876543 223 3567777778888888888888887765431 1112345
Q ss_pred HHHHHHHHHccCcHHHHHHHHHhhccccCCCCC----HhHHHHHHHHHHhcCC--------------------HHHHHHH
Q 009977 133 FLNLMKHFSNCSLHERVLEMFHKIHPITREKPS----LKAISTCLNLLIESNQ--------------------VDLAQNF 188 (521)
Q Consensus 133 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~--------------------~~~a~~~ 188 (521)
+..+...|...|++++|++.+++........++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 566777777777877777777765432222222 1234444555555555 5555544
Q ss_pred HHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 009977 189 LKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKD 268 (521)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 268 (521)
+++..... ...+.......++..+...+...|++++|++.+++..+..
T Consensus 166 ~~~a~~~~--------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 213 (338)
T 3ro2_A 166 YEENLSLV--------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 213 (338)
T ss_dssp HHHHHHHH--------------------------------HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------------------------------HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44432110 0000000112234444444455555555555544443221
Q ss_pred CCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC----cchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009977 269 QILPD----ALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCN-PN----VFNYTTLMNGFCKEGKLQEAKEVFDEMKNFL 339 (521)
Q Consensus 269 ~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 339 (521)
...++ ..++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...++++....
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 00011 124444555555555555555555544432100 00 2344455555555666666665555543310
Q ss_pred ----CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009977 340 ----LK-PDTIGYTTLINCFCRAGRVDEALELLKEMKER 373 (521)
Q Consensus 340 ----~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 373 (521)
.. ....++..+...|...|++++|...+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 00 01334555666666666666666666666554
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=5.3e-13 Score=121.33 Aligned_cols=217 Identities=11% Similarity=0.012 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-------CCCH-------HHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 009977 255 REAIELFEEMVSKDQILPDALTYNVLIDGFCR-------GGKV-------DRAKKIMEFMKNNGCNPNVFNYTTLMNGFC 320 (521)
Q Consensus 255 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 320 (521)
++|+..|++++... +.+...|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45666666666542 4455555555555542 3443 555555555555211233345555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH-hcCCHHH
Q 009977 321 KEGKLQEAKEVFDEMKNFLLKPD-TI-GYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLC-REGKIEE 397 (521)
Q Consensus 321 ~~~~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 397 (521)
+.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+.... +...|...+.... ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHH
Confidence 555555555555555542 222 22 4555555555555555555555555544321 2223322222211 1355555
Q ss_pred HHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009977 398 ALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRG-FLP--HYATSNELLVRLCKAGMAEDAAIALFG 474 (521)
Q Consensus 398 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~ 474 (521)
|..+|+++.+..+. +...|..++..+.+.|++++|..+|++++... +.| ....|..++....+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555443221 34445555555555555555555555555431 233 234444455555555555555555555
Q ss_pred HHH
Q 009977 475 LVE 477 (521)
Q Consensus 475 ~~~ 477 (521)
+.+
T Consensus 267 a~~ 269 (308)
T 2ond_A 267 RFT 269 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.63 E-value=3.1e-14 Score=131.29 Aligned_cols=278 Identities=15% Similarity=0.047 Sum_probs=129.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---C-CCCCHHHHH
Q 009977 205 FNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN--LITYSTLIDGLCKNGRFREAIELFEEMVSKD---Q-ILPDALTYN 278 (521)
Q Consensus 205 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~~~~~ 278 (521)
+......+...|++++|...|+++.+..+..+. ...+..++..+...|++++|++.++++.... + .+....++.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 344455556666666666666666555432111 2445556666666666666666666554320 0 011133455
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC----cchHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 009977 279 VLIDGFCRGGKVDRAKKIMEFMKNNGCN-PN----VFNYTTLMNGFCKEGK--------------------LQEAKEVFD 333 (521)
Q Consensus 279 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~ 333 (521)
.+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 5555666666666666666555432100 01 1244445555555555 455544444
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---
Q 009977 334 EMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGC-KADIVTFNIILGGLCREGKIEEALGMLEKLWYDG--- 409 (521)
Q Consensus 334 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--- 409 (521)
+.... .. ..+. .....++..+...+...|++++|...+++.....
T Consensus 168 ~a~~~----------------------------~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 168 ENLSL----------------------------VT---ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHHHH----------------------------HH---HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----------------------------HH---hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 43220 00 0000 0011233334444444444444444444433210
Q ss_pred --CccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 009977 410 --IYLNKASYRIVLNFSCQKGELEKAIELLRLMLCR----GFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEM---- 478 (521)
Q Consensus 410 --~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 478 (521)
......++..+...+...|++++|...++++.+. +..+ ...++..+...+...|++++|...++++.+.
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 0001123444444555555555555555554421 0000 1334455555566666666666666555431
Q ss_pred CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 009977 479 GFKP-ESDSWALLVELICRGRKLLFAFELLDELVIK 513 (521)
Q Consensus 479 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 513 (521)
+-.+ ...++..+...+.+.|++++|.+.++++++.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1000 1235556666666677777777777666654
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.61 E-value=9.2e-14 Score=130.79 Aligned_cols=164 Identities=11% Similarity=0.005 Sum_probs=91.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-C-----CcchHH
Q 009977 244 LIDGLCKNGRFREAIELFEEMVSKDQILP----DALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCN-P-----NVFNYT 313 (521)
Q Consensus 244 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 313 (521)
.+..+...|++++|+..|++........+ ...++..+...|...|++++|...+.+..+.-.. + ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 55666777888888888877765311112 2346677777777777777777777766642100 1 123455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCcHhHHH
Q 009977 314 TLMNGFCKEGKLQEAKEVFDEMKNFLLK-PD----TIGYTTLINCFCRAGRVDEALELLKEMKER----GC-KADIVTFN 383 (521)
Q Consensus 314 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~ 383 (521)
.++.+|...|++++|...+++..+.... ++ ..++..+...|...|++++|+..+++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 5666666666666666666655431000 11 134555555566666666666666555541 11 11234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 384 IILGGLCREGKIEEALGMLEKLWY 407 (521)
Q Consensus 384 ~l~~~~~~~g~~~~a~~~~~~~~~ 407 (521)
.+...|...|++++|...+++...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555556666666555555443
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.61 E-value=1.4e-13 Score=114.84 Aligned_cols=168 Identities=14% Similarity=0.026 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 009977 344 TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNF 423 (521)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (521)
...|..+...|...|++++|+..|++..+..+. +..++..+..+|...|++++|...+..+...... +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 445555555555555555555555555554433 4455555555555555555555555555544322 34444455555
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHH
Q 009977 424 SCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLF 502 (521)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 502 (521)
+...++++.|...+.++.+. .| +...+..+...+.+.|++++|+..|++.++.. +.+...|..++.+|.+.|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 55555555555555555532 22 44555555555556666666666665555442 2334555555566666666666
Q ss_pred HHHHHHHHHHcCcc
Q 009977 503 AFELLDELVIKESG 516 (521)
Q Consensus 503 A~~~~~~m~~~~~~ 516 (521)
|.+.|+++++.+|.
T Consensus 160 A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhCCcc
Confidence 66666666555543
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.60 E-value=1.7e-13 Score=128.94 Aligned_cols=233 Identities=9% Similarity=-0.003 Sum_probs=162.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC-----HHHH
Q 009977 207 ILIKHHCKRGTLESAFEVLKEMKKSQMSYP----NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD-----ALTY 277 (521)
Q Consensus 207 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~ 277 (521)
..+..+...|++++|...|++..+.....+ ...++..++..+...|++++|+..+++..+.....++ ..++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 366777888999999998888876411112 3467788888888999999999988887754221222 4567
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC----cchHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHH
Q 009977 278 NVLIDGFCRGGKVDRAKKIMEFMKNNGCN-PN----VFNYTTLMNGFCKEGKLQEAKEVFDEMKNF----LL-KPDTIGY 347 (521)
Q Consensus 278 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~ 347 (521)
+.+...|...|++++|...+++..+.... ++ ..++..++.+|...|++++|...+++..+. +. .....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 88888899999999999999888753211 11 236778899999999999999999887661 22 2236678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCcHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCcc-CHHHHHH
Q 009977 348 TTLINCFCRAGRVDEALELLKEMKERG----CKADIVTFNIILGGLCREGK---IEEALGMLEKLWYDGIYL-NKASYRI 419 (521)
Q Consensus 348 ~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~ 419 (521)
..+...|...|++++|...+++..+.. .......+..+...+...|+ +++|+.++++. +..+ ....+..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 344 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 888889999999999999998876541 11112234556667777777 66666666554 2222 2345566
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Q 009977 420 VLNFSCQKGELEKAIELLRLMLC 442 (521)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~ 442 (521)
+...|...|++++|...++++.+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777777777663
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.59 E-value=5.9e-13 Score=111.00 Aligned_cols=167 Identities=19% Similarity=0.154 Sum_probs=96.9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 009977 201 NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVL 280 (521)
Q Consensus 201 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 280 (521)
++.+|..++..|...|++++|++.|++..+..| .+..+|..++.++...|++++|+..+.++.... +.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP--NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHH
Confidence 344566666666666666666666666666554 355566666666666666666666666665542 3344555555
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 009977 281 IDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRV 360 (521)
Q Consensus 281 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 360 (521)
...+...++++.|...+.+..+.. +.+...+..+..+|.+.|++++|++.|++..+... .+..+|..+..+|.+.|++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCH
Confidence 555666666666666666655543 34455555556666666666666666665555321 1355555555566666666
Q ss_pred HHHHHHHHHHHHc
Q 009977 361 DEALELLKEMKER 373 (521)
Q Consensus 361 ~~A~~~~~~~~~~ 373 (521)
++|+..|++.++.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 6666666655554
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=3.5e-12 Score=115.89 Aligned_cols=219 Identities=11% Similarity=0.057 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 009977 219 ESAFEVLKEMKKSQMSYPNLITYSTLIDGLC-------KNGRF-------REAIELFEEMVSKDQILPDALTYNVLIDGF 284 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 284 (521)
++|..+|++.....+ .+...|..++..+. ..|++ ++|..+|++.+..- .+.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~p--~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-CcccHHHHHHHHHHH
Confidence 566677777766555 46666766666654 34665 77777777776520 133455677777777
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHH
Q 009977 285 CRGGKVDRAKKIMEFMKNNGCNPNVF-NYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFC-RAGRVDE 362 (521)
Q Consensus 285 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 362 (521)
.+.|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|..+|+++.+... .+...|........ ..|++++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777642 22233 677777777777777777777777776432 23344433332222 2578888
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-Ccc--CHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 009977 363 ALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDG-IYL--NKASYRIVLNFSCQKGELEKAIELLRL 439 (521)
Q Consensus 363 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (521)
|..+|++..+..+. +...|..++..+.+.|++++|..+|+++.... ..| ....|..++..+...|+.++|..++++
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888877765433 56677777777777888888888888887752 233 355677777777777888888888887
Q ss_pred HHHC
Q 009977 440 MLCR 443 (521)
Q Consensus 440 ~~~~ 443 (521)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7753
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.58 E-value=1.7e-13 Score=132.20 Aligned_cols=213 Identities=10% Similarity=-0.057 Sum_probs=151.2
Q ss_pred HHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009977 182 VDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTL-ESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIEL 260 (521)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 260 (521)
++++...++.... ..+.+...+..+...+...|++ ++|++.|++..+..+ .+...|..++.+|...|++++|++.
T Consensus 84 ~~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP--ELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3445555554432 2234667777888888888888 888888888877765 4677788888888888888888888
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc--------C
Q 009977 261 FEEMVSKDQILPDALTYNVLIDGFCRG---------GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKE--------G 323 (521)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~ 323 (521)
|+++++. .|+...+..+...+... |++++|++.++++.+.. +.+...+..+..+|... |
T Consensus 160 ~~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 8888765 35567777777777777 78888888888877764 45566777777777777 7
Q ss_pred CHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 009977 324 KLQEAKEVFDEMKNFLLK--PDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGM 401 (521)
Q Consensus 324 ~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 401 (521)
++++|+..|+++.+.... .+...|..+..+|...|++++|+..|++..+..+. +...+..+...+...|++++|...
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777787777777764210 25677777777777777777777777777766543 555677777777777777777665
Q ss_pred HH
Q 009977 402 LE 403 (521)
Q Consensus 402 ~~ 403 (521)
+.
T Consensus 315 ~~ 316 (474)
T 4abn_A 315 KG 316 (474)
T ss_dssp TT
T ss_pred hc
Confidence 43
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.56 E-value=1.2e-13 Score=133.21 Aligned_cols=209 Identities=8% Similarity=-0.101 Sum_probs=109.8
Q ss_pred hHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcH-HHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 009977 112 EAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLH-ERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLK 190 (521)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 190 (521)
+++.+.++...... +.+...+..+...|...|++ ++|++.|++..+. .+.+..++..+..+|...|++++|...|+
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444444332 33455555566666666666 6666666655432 22334455555555555566666655555
Q ss_pred HhhhcCCCCCcHHHHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--------CC
Q 009977 191 YSNQHLRLKPNTCIFNILIKHHCKR---------GTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKN--------GR 253 (521)
Q Consensus 191 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~ 253 (521)
++++ ..|+..++..+..++... |++++|.+.|++..+..+ .+...|..++.+|... |+
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV--LDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHhhccccch
Confidence 5542 234445555555555555 555555555555555544 3455555555555555 55
Q ss_pred hHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 009977 254 FREAIELFEEMVSKDQIL---PDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKE 330 (521)
Q Consensus 254 ~~~A~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 330 (521)
+++|++.|+++.+.. + .+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+
T Consensus 237 ~~~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 237 SQQALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555432 2 244555555555555555555555555555543 3334444555555555555555544
Q ss_pred H
Q 009977 331 V 331 (521)
Q Consensus 331 ~ 331 (521)
.
T Consensus 314 ~ 314 (474)
T 4abn_A 314 S 314 (474)
T ss_dssp H
T ss_pred H
Confidence 3
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=6e-14 Score=127.89 Aligned_cols=170 Identities=16% Similarity=0.177 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------C
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKS-------QMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK------D 268 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~ 268 (521)
..++..++..+...|++++|..+++++.+. ... ....++..++..+...|++++|+..++++... .
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP-DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 446666666666677777777666666552 111 33455666666777777777777777666543 1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 009977 269 QILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN------GC-NPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNF--- 338 (521)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 338 (521)
..+....++..+...+...|++++|...++++.+. +. +....++..+...+...|++++|.++++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11223455666666677777777777777666543 11 112334556666666667777776666665442
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 339 ---LLKPD-TIGYTTLINCFCRAGRVDEALELLKEMKE 372 (521)
Q Consensus 339 ---~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 372 (521)
+..|. ..++..+...|...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111 34555666666666777777766666654
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.55 E-value=7e-12 Score=117.59 Aligned_cols=163 Identities=10% Similarity=0.062 Sum_probs=76.5
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCC----cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----CHHHHHHH
Q 009977 174 NLLIESNQVDLAQNFLKYSNQHLRLKP----NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYP-----NLITYSTL 244 (521)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~l 244 (521)
..+...|++++|...++++.+.....+ ...++..++..|...|+++.|...+++..+.....+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 334455555555555555543211111 123555556666666666666665555443211101 13345555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCCCcchHHHH
Q 009977 245 IDGLCKNGRFREAIELFEEMVSKDQILP----DALTYNVLIDGFCRGGKVDRAKKIMEFMKN-----NGCNPNVFNYTTL 315 (521)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 315 (521)
+..|...|++++|++.|++..+.....+ ...++..+..+|...|++++|...+++..+ .. +....++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHH
Confidence 5556666666666666555543210001 122444555555555555555555555544 21 1223344445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 009977 316 MNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
+.+|.+.|++++|...+++..+
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555555555555554443
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.55 E-value=3.4e-12 Score=119.58 Aligned_cols=268 Identities=14% Similarity=0.093 Sum_probs=126.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCcH----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCH----HHHHHH
Q 009977 173 LNLLIESNQVDLAQNFLKYSNQHLRLKPNT----CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNL----ITYSTL 244 (521)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l 244 (521)
...+...|++++|...+++.+.... ..+. .+++.+...+...|++++|...+++.........+. .++..+
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445556666666666666554321 1111 144555566666666666666666654422111121 223445
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcC---CCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----CcchHHH
Q 009977 245 IDGLCKNGRFREAIELFEEMVSKD---QIL--P-DALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNP----NVFNYTT 314 (521)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ 314 (521)
...+...|++++|+..+++..... +.. | ....+..+...+...|++++|...+++..+..... ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 556666666666666666655421 111 1 12344445555666666666666666655432111 1123444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---cHhHHHHH
Q 009977 315 LMNGFCKEGKLQEAKEVFDEMKNFLLKPD-TIGYT-----TLINCFCRAGRVDEALELLKEMKERGCKA---DIVTFNII 385 (521)
Q Consensus 315 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l 385 (521)
+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+ ....+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 55555566666666666655543211111 01111 12223445566666665555554332111 01133444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCccCH-HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 009977 386 LGGLCREGKIEEALGMLEKLWYD----GIYLNK-ASYRIVLNFSCQKGELEKAIELLRLML 441 (521)
Q Consensus 386 ~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (521)
...+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55555555555555555554332 111111 133344444555555555555555554
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=3.7e-14 Score=129.28 Aligned_cols=178 Identities=11% Similarity=0.037 Sum_probs=99.5
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHhhhCC------CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhcc-------
Q 009977 59 FISHGAAISLIKCEKEPQCALEIFNTVSEQK------GFNHNNATYATILDKLARYKKFEAVDAVLRQMTYET------- 125 (521)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------- 125 (521)
...+..+...+...|++++|+.+|+++.... ..+.....+..+...+...|++++|...+++.....
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 3456667777777777777777777765410 112234456666666677777777777776665431
Q ss_pred CCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHH
Q 009977 126 CKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIF 205 (521)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 205 (521)
.+....++..+...|...|++++|++.|++..... +... ....+....++
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----------------------------~~~~-~~~~~~~~~~~ 156 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR-----------------------------EKVL-GKDHPDVAKQL 156 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-----------------------------HHHH-CTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH-----------------------------HHhc-CCCChHHHHHH
Confidence 11223344455555555566666555555543210 0000 00111123456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 206 NILIKHHCKRGTLESAFEVLKEMKKS------QMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 206 ~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
..++..+...|++++|.+.++++... +.......++..++..+...|++++|++.++++..
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66667777777777777777766543 11112344566677777777777777777777664
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.54 E-value=4.4e-12 Score=118.96 Aligned_cols=165 Identities=13% Similarity=0.041 Sum_probs=83.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-----CHHH
Q 009977 206 NILIKHHCKRGTLESAFEVLKEMKKSQMSYP----NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILP-----DALT 276 (521)
Q Consensus 206 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~ 276 (521)
...+..+...|++++|...|++..+.....+ ...++..++..|...|++++|+..+++..+.....+ ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3345556677777777777777654321112 234566667777777777777777766654311111 1334
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcC----CC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 009977 277 YNVLIDGFCRGGKVDRAKKIMEFMKNNG----CN-PNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN-----FLLKPDTIG 346 (521)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~ 346 (521)
++.+..+|...|++++|.+.+++..+.. -+ ....++..++.+|...|++++|...+++... .... ...+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHH
Confidence 5566666666666666666666555421 00 0112344445555555555555555544433 1111 1333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 347 YTTLINCFCRAGRVDEALELLKEMK 371 (521)
Q Consensus 347 ~~~l~~~~~~~~~~~~A~~~~~~~~ 371 (521)
+..+...|.+.|++++|...+++..
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444444444444444444443
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.49 E-value=1.9e-11 Score=114.48 Aligned_cols=62 Identities=16% Similarity=0.133 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSY---PNLITYSTLIDGLCKNGRFREAIELFEEMV 265 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 265 (521)
++..+...+...|++++|...+++........ ....++..+...+...|++++|...+++..
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44445555555666666666555554332210 012344455555555555555555555554
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.45 E-value=5.3e-12 Score=126.61 Aligned_cols=165 Identities=16% Similarity=0.138 Sum_probs=107.1
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 009977 201 NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVL 280 (521)
Q Consensus 201 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 280 (521)
+..+++.|..+|.+.|++++|++.|++..+..+ .+..+|..++.+|.+.|++++|++.|+++++.+ +-+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P--~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 345666666677777777777777776666655 456666666667777777777777777666653 3445666666
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 009977 281 IDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKP-DTIGYTTLINCFCRAGR 359 (521)
Q Consensus 281 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 359 (521)
..+|...|++++|++.|++.++.. +.+..++..+..+|...|++++|++.|+++.+. .| +...+..+..+|...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhccc
Confidence 666777777777777776666654 445566666666777777777777777666653 23 35666666666666777
Q ss_pred HHHHHHHHHHHHH
Q 009977 360 VDEALELLKEMKE 372 (521)
Q Consensus 360 ~~~A~~~~~~~~~ 372 (521)
+++|.+.++++.+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665543
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.45 E-value=3.9e-12 Score=127.60 Aligned_cols=162 Identities=17% Similarity=0.086 Sum_probs=79.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 009977 309 VFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKP-DTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILG 387 (521)
Q Consensus 309 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 387 (521)
..+++.|..+|.+.|++++|++.|+++.+. .| +..+|..+..+|.+.|++++|+..|++.++.... +..+|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 344555555555555555555555555442 22 2444555555555555555555555555544322 3444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 009977 388 GLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAE 466 (521)
Q Consensus 388 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 466 (521)
+|...|++++|++.|+++.+.... +...|..+..+|...|++++|++.|+++++ +.| +...+..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHH
Confidence 555555555555555555444322 344445555555555555555555555543 233 3444444555555555555
Q ss_pred HHHHHHHHHH
Q 009977 467 DAAIALFGLV 476 (521)
Q Consensus 467 ~a~~~~~~~~ 476 (521)
+|.+.+++++
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555544444
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.45 E-value=9.3e-12 Score=103.63 Aligned_cols=169 Identities=15% Similarity=0.064 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHH
Q 009977 345 IGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFS 424 (521)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (521)
..+..+...+...|++++|+..++++.+.... +...+..+...+...|++++|...++++...... +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 34455556666667777777666666554322 4556666666677777777777777766655322 455666666777
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHH
Q 009977 425 CQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAF 504 (521)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 504 (521)
...|++++|.+.++++.+. .+.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777777653 23356666677777777777777777777776653 334567777777777788888888
Q ss_pred HHHHHHHHcCccC
Q 009977 505 ELLDELVIKESGT 517 (521)
Q Consensus 505 ~~~~~m~~~~~~~ 517 (521)
+.++++.+..|++
T Consensus 165 ~~~~~~~~~~~~~ 177 (186)
T 3as5_A 165 PHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCc
Confidence 8888777765543
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.44 E-value=1.6e-11 Score=106.16 Aligned_cols=200 Identities=14% Similarity=0.004 Sum_probs=158.4
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 009977 307 PNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIIL 386 (521)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 386 (521)
.++..+...+..+...|++++|...|++..+....++...+..+..++...|++++|+..+++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567888899999999999999999999988654367778878999999999999999999999987654 677899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCccCH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 009977 387 GGLCREGKIEEALGMLEKLWYDGIYLNK-------ASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPH---YATSNELL 456 (521)
Q Consensus 387 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~ 456 (521)
..|...|++++|...+++..+..+. +. ..|..+...+...|++++|+..|+++++ ..|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 9999999999999999999886443 44 4577788888999999999999999985 4665 56677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccCc
Q 009977 457 VRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESGTI 518 (521)
Q Consensus 457 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 518 (521)
.++...| ...++++...+ ..+...+.... ....+.+++|...+++.++.+|++.
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~ 214 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRT 214 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCH
Confidence 7776554 34455555543 33444444433 3457889999999999999988764
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.43 E-value=2.5e-11 Score=101.00 Aligned_cols=22 Identities=0% Similarity=0.063 Sum_probs=9.2
Q ss_pred HHHHHHHccCcHHHHHHHHHhh
Q 009977 135 NLMKHFSNCSLHERVLEMFHKI 156 (521)
Q Consensus 135 ~l~~~~~~~g~~~~a~~~~~~~ 156 (521)
.+...+...|++++|++.|+++
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~ 34 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQV 34 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHH
Confidence 3333444444444444444443
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.42 E-value=4.3e-11 Score=103.48 Aligned_cols=131 Identities=14% Similarity=0.065 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 009977 203 CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLID 282 (521)
Q Consensus 203 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (521)
..+...+..+...|++++|...|++..+..+. ++...+..++.++...|++++|++.|++..+.. +.+...+..+..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 84 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHHHHH
Confidence 44444444444455555555555544444331 233344444444555555555555555544431 223344444444
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCc-------chHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 283 GFCRGGKVDRAKKIMEFMKNNGCNPNV-------FNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
++...|++++|+..+++..+.. +.+. .+|..+...+...|++++|++.|+++.+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 4555555555555555444432 2222 2344444555555555555555555544
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.35 E-value=5.6e-11 Score=106.93 Aligned_cols=159 Identities=11% Similarity=-0.036 Sum_probs=77.1
Q ss_pred HHHhCCCHHHHHHHHHHHHHc----CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHH
Q 009977 283 GFCRGGKVDRAKKIMEFMKNN----GCNP-NVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK-PD----TIGYTTLIN 352 (521)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~ 352 (521)
.|...|++++|...|.+..+. |-++ ...++..+..+|...|++++|+..+++..+.... .+ ..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566666666666655542 1111 1335556666666666666666666655431100 01 234455555
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcCCCC-c----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCH------HHHHHH
Q 009977 353 CFCRA-GRVDEALELLKEMKERGCKA-D----IVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNK------ASYRIV 420 (521)
Q Consensus 353 ~~~~~-~~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l 420 (521)
.|... |++++|+..|++..+..... + ..++..+...+...|++++|+..|+++......... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 55553 55555555555554431100 0 223445555555555555555555555554222111 133444
Q ss_pred HHHHHcCCCHHHHHHHHHHHH
Q 009977 421 LNFSCQKGELEKAIELLRLML 441 (521)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~ 441 (521)
..++...|++++|...|++.+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555555555554
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.35 E-value=2.2e-11 Score=108.97 Aligned_cols=166 Identities=11% Similarity=0.028 Sum_probs=86.7
Q ss_pred hcCChHHHHHHHHHhhhC------CCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhcc-------CCcCHHHHHHHH
Q 009977 71 CEKEPQCALEIFNTVSEQ------KGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYET-------CKFHEGIFLNLM 137 (521)
Q Consensus 71 ~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~ 137 (521)
..|++++|+.+|++++.. ...+....++..+..++...|++++|...+++..+.. .+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 345555555555554331 1112234567777777777788888887777776541 122344566667
Q ss_pred HHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCC
Q 009977 138 KHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGT 217 (521)
Q Consensus 138 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 217 (521)
..|...|++++|++.|++..... +... ....+....++..++..|...|+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~-----------------------------~~~~-~~~~~~~~~~~~~la~~~~~~g~ 142 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIR-----------------------------EKVL-GKFHPDVAKQLNNLALLCQNQGK 142 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHH-----------------------------HHHH-CTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHhccHHHHHHHHHHHHHHH-----------------------------HHHc-CCCChHHHHHHHHHHHHHHHcCC
Confidence 77777777777777776654311 0000 00011123345555555555555
Q ss_pred hHHHHHHHHHHHhC-----CC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 218 LESAFEVLKEMKKS-----QM-SYPNLITYSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 218 ~~~A~~~~~~~~~~-----~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
+++|...++++.+. +. ......++..++..+...|++++|+.+++++.+
T Consensus 143 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 143 AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555443 00 001234455555556666666666666655543
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.34 E-value=3.5e-11 Score=107.64 Aligned_cols=29 Identities=21% Similarity=0.155 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 009977 414 KASYRIVLNFSCQKGELEKAIELLRLMLC 442 (521)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (521)
..++..+...|...|++++|..+++++++
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566677777777777777777777664
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.32 E-value=3.1e-10 Score=100.33 Aligned_cols=102 Identities=12% Similarity=0.036 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC-HHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN-LITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD-ALTYNV 279 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~ 279 (521)
...+..++..+.+.|++++|...|+++.+..+..+. ...+..++.++...|++++|+..|+++++..+..|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 344444555555555555555555555554432110 344555555555555555555555555544221111 233444
Q ss_pred HHHHHHh--------CCCHHHHHHHHHHHHHc
Q 009977 280 LIDGFCR--------GGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 280 l~~~~~~--------~~~~~~a~~~~~~~~~~ 303 (521)
+..++.. .|++++|+..|+++++.
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 4555555 55555555555555544
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.31 E-value=1.4e-10 Score=104.29 Aligned_cols=200 Identities=10% Similarity=0.022 Sum_probs=95.8
Q ss_pred HHHHhcCCchHHHHHHHHhhhcc----CCc-CHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHH
Q 009977 103 DKLARYKKFEAVDAVLRQMTYET----CKF-HEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLI 177 (521)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 177 (521)
..|...|++++|...|++..+.. -++ ...++..+..+|...|++++|+..|++........
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-------------- 110 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-------------- 110 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--------------
Confidence 34556677777777776665431 111 13456666666777777777776666554221111
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcC
Q 009977 178 ESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKR-GTLESAFEVLKEMKKSQMSYPN----LITYSTLIDGLCKNG 252 (521)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g 252 (521)
|+... -..+++.+..+|... |++++|+..|++..+..+...+ ..++..++..+...|
T Consensus 111 --g~~~~----------------~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g 172 (292)
T 1qqe_A 111 --GQFRR----------------GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG 172 (292)
T ss_dssp --TCHHH----------------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred --CCHHH----------------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC
Confidence 11100 022444455555553 5555555555554433211011 234555555555666
Q ss_pred ChHHHHHHHHHHHhcCCCCCCH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc------chHHHHHHHHH-
Q 009977 253 RFREAIELFEEMVSKDQILPDA-----LTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNV------FNYTTLMNGFC- 320 (521)
Q Consensus 253 ~~~~A~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~- 320 (521)
++++|+..|++........+.. ..+..+..++...|++++|...|++..+.. |+. ..+..++..+.
T Consensus 173 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~ 250 (292)
T 1qqe_A 173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNE 250 (292)
T ss_dssp CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHc
Confidence 6666666665555432111111 134455555555566666666665555421 111 01223334343
Q ss_pred -hcCCHHHHHHHHHHHH
Q 009977 321 -KEGKLQEAKEVFDEMK 336 (521)
Q Consensus 321 -~~~~~~~A~~~~~~~~ 336 (521)
..+++++|+..|+.+.
T Consensus 251 ~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 251 GDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp TCTTTHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHhccCC
Confidence 3445666666665544
No 90
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.28 E-value=2.1e-08 Score=96.50 Aligned_cols=204 Identities=13% Similarity=0.052 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 291 DRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEM 370 (521)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 370 (521)
+.+..+|++++... +.+...|...+..+.+.|+.+.|..++++.... +.+...|. .|....+.++. ++.+
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHH
Confidence 44667777777653 556667777777777888888888888887775 22222222 12222111221 2222
Q ss_pred HHcC------------CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc-CCCHHHHHHHH
Q 009977 371 KERG------------CKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ-KGELEKAIELL 437 (521)
Q Consensus 371 ~~~~------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~ 437 (521)
.+.- .......|...+..+.+.++.+.|..+|+++ .. ...+...|...+..-.. .++.+.|..+|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 2110 0011245666666666778899999999988 32 22344455433322222 33699999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 009977 438 RLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 438 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 512 (521)
+.+++. ..-++..+...++.....|+.+.|..+|+++. .....|...++.-...|+.+.+..+++++.+
T Consensus 344 e~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 344 SSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 998864 22245566667777788999999999998862 2467788888777778999999999998885
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.26 E-value=1.1e-09 Score=96.85 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhc
Q 009977 206 NILIKHHCKRGTLESAFEVLKEMKKSQMSYP-NLITYSTLIDGLCKN----------GRFREAIELFEEMVSK 267 (521)
Q Consensus 206 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~ 267 (521)
..++..|.+.|++++|+..|+++.+..+..+ ....+..++.+|... |++++|+..|+++.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 4445555566666666666666555443211 233445555555544 5555566666555554
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.24 E-value=6e-09 Score=91.68 Aligned_cols=59 Identities=15% Similarity=0.110 Sum_probs=22.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009977 243 TLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMK 301 (521)
Q Consensus 243 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 301 (521)
.++.++...|++++|++++.+.+..+...-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344444444444444444433221101223333333444444444444444444443
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.24 E-value=5.1e-10 Score=94.99 Aligned_cols=75 Identities=16% Similarity=0.110 Sum_probs=36.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 009977 244 LIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK 321 (521)
Q Consensus 244 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 321 (521)
++.++...|++++|+..|++.++.+ +.+...+..+..++...|++++|+..|+++++.. +.+..++..+..+|..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4445555555555555555554442 3344445555555555555555555555555443 3334444444444433
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.24 E-value=1.9e-08 Score=88.54 Aligned_cols=179 Identities=13% Similarity=0.039 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 293 AKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK-PDTIGYTTLINCFCRAGRVDEALELLKEMK 371 (521)
Q Consensus 293 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 371 (521)
|+..+++..+.+ .++..++..++.++...|++++|++++.+....+.. -+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444433 233333444555555555555555555554433221 124444455555555555555555555554
Q ss_pred HcCCCC-----cHhHHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 009977 372 ERGCKA-----DIVTFNIILGG--LCREG--KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLC 442 (521)
Q Consensus 372 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (521)
+. .| +..+...++.+ ....| ++.+|..+|+++... .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44 22 13333333333 22222 555555555555443 22222222222345555555555555554432
Q ss_pred C-----CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 443 R-----GF---LP-HYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 443 ~-----~~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
. +. .| ++.++..++......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 1 00 12 44444344444444454 555555555554
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.22 E-value=1.5e-08 Score=90.22 Aligned_cols=216 Identities=12% Similarity=0.022 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH----HhC---CC
Q 009977 219 ESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG--RFREAIELFEEMVSKDQILPDALTYNVLIDGF----CRG---GK 289 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 289 (521)
++|++.++.+...+| .+..+|+.-..++...| ++++++++++.++..+ +-+..+|+.-...+ ... ++
T Consensus 50 ~~aL~~t~~~L~~nP--~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 50 ERALHITELGINELA--SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHCc--HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccCC
Confidence 345555555544444 34444444444444444 4555555555444432 22223333322222 222 34
Q ss_pred HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------HH
Q 009977 290 VDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQ--EAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGR------VD 361 (521)
Q Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~ 361 (521)
+++++++++.+.+.. +.+..+|+.-..++.+.|.++ ++++.++++.+..+. +..+|+.....+...+. ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 444444444444433 333334433333333444433 444444444443221 33444433333333333 44
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CccCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 009977 362 EALELLKEMKERGCKADIVTFNIILGGLCREGKIEE-ALGMLEKLWYDG--IYLNKASYRIVLNFSCQKGELEKAIELLR 438 (521)
Q Consensus 362 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (521)
++++.+++++...+. |...|+.+...+.+.|+..+ +..+..++...+ -..+...+..++..|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 555555555444433 44445444444444443222 222333332211 01134444445555555555555555555
Q ss_pred HHH
Q 009977 439 LML 441 (521)
Q Consensus 439 ~~~ 441 (521)
.+.
T Consensus 283 ~l~ 285 (306)
T 3dra_A 283 LLK 285 (306)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.22 E-value=1e-09 Score=93.07 Aligned_cols=74 Identities=9% Similarity=0.072 Sum_probs=35.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 009977 315 LMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLC 390 (521)
Q Consensus 315 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (521)
+..+|.+.|++++|+..|++..+... .+...+..+..+|...|++++|+..|+++.+..+. +..++..+...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~ 133 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 44445555555555555555444221 13444445555555555555555555555544332 3444444444443
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.21 E-value=1.1e-09 Score=85.38 Aligned_cols=127 Identities=20% Similarity=0.259 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 009977 205 FNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGF 284 (521)
Q Consensus 205 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 284 (521)
+..++..+...|++++|..+++++.+..+ .+...+..++..+...|++++|...++++.... +.+...+..+...+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC--cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 34444555555555555555555544433 344445555555555555555555555554432 23344444455555
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 285 CRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMK 336 (521)
Q Consensus 285 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 336 (521)
...|++++|.+.++++.+.. +.+..++..++..+...|++++|...++++.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 55555555555555554432 2233344444444555555555555544443
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.21 E-value=1.1e-09 Score=85.43 Aligned_cols=133 Identities=14% Similarity=0.110 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009977 381 TFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLC 460 (521)
Q Consensus 381 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 460 (521)
.+..++..+...|++++|..+++++...+.. +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3445555666666666666666666554322 44555566666666666666666666666432 224555666666777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 461 KAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 461 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
..|++++|...++++.+.. +.+...+..++..+.+.|++++|.+.++++.+.+|.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 7777777777777766543 234566667777777777777777777777776554
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.21 E-value=2.3e-09 Score=92.21 Aligned_cols=191 Identities=10% Similarity=0.009 Sum_probs=123.0
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH--hHHH
Q 009977 308 NVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK-PD-TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADI--VTFN 383 (521)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~ 383 (521)
+...+..++..+...|++++|+..|+++.+.... +. ...+..+..+|.+.|++++|+..|+++.+..+.... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445666778888889999999999888764322 11 356777888888889999999999888876433111 2444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-H------------
Q 009977 384 IILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHY-A------------ 450 (521)
Q Consensus 384 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~------------ 450 (521)
.+..++...|.. .+ ..|..+...+...|++++|+..|+++++. .|+. .
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHH
Confidence 455555442210 00 00111112222344455555555555432 2211 1
Q ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHHHHcCccCcc
Q 009977 451 -----TSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES----DSWALLVELICRGRKLLFAFELLDELVIKESGTIQ 519 (521)
Q Consensus 451 -----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 519 (521)
....+...+.+.|++++|...|+++++. .|+. ..+..++.++.+.|++++|.+.++++...+|.+++
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 1124567788999999999999999875 3443 56888999999999999999999999999988765
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.19 E-value=2.5e-10 Score=115.18 Aligned_cols=174 Identities=10% Similarity=-0.073 Sum_probs=120.3
Q ss_pred HhcCChHHHHHHHHHHH--------hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 009977 213 CKRGTLESAFEVLKEMK--------KSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGF 284 (521)
Q Consensus 213 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 284 (521)
...|++++|++.+++.. +..+ .+...|..++.++...|++++|++.|+++.+.+ +.+...|..+..++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS--ESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT--TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc--cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHH
Confidence 66777888888888777 4444 456677777777788888888888888777653 45667777777777
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009977 285 CRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEAL 364 (521)
Q Consensus 285 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 364 (521)
...|++++|++.|+++++.. +.+...+..+..+|.+.|++++ ++.|+++.+... .+...|..+..++.+.|++++|+
T Consensus 478 ~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHH
Confidence 78888888888888777764 4456677777777778888877 777777776432 24667777777777788888888
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 009977 365 ELLKEMKERGCKADIVTFNIILGGLCREGK 394 (521)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 394 (521)
..|+++.+.+.. +...+..+..++...++
T Consensus 555 ~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 777777665432 34566666666655443
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.18 E-value=3.8e-08 Score=94.79 Aligned_cols=358 Identities=9% Similarity=-0.006 Sum_probs=204.6
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC-chHHHHHHHHhhhc-cC-CcCHHHHHHHHHHHH----ccCc
Q 009977 73 KEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKK-FEAVDAVLRQMTYE-TC-KFHEGIFLNLMKHFS----NCSL 145 (521)
Q Consensus 73 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~ 145 (521)
++++.+..+|++++.. .|+...|...+....+.+. .+....+|+..+.. |. +.+...|...+..+. ..|+
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 7788888888887643 3577777777776666653 34566677766653 21 235566666666544 2356
Q ss_pred HHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHH
Q 009977 146 HERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVL 225 (521)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 225 (521)
.+.+.++|++... .+...-...|...... ........+..++... .+.+..|..++
T Consensus 105 ~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~----------------------~~~y~~ar~~y 160 (493)
T 2uy1_A 105 IEKIRNGYMRALQ-TPMGSLSELWKDFENF-ELELNKITGKKIVGDT----------------------LPIFQSSFQRY 160 (493)
T ss_dssp HHHHHHHHHHHHT-SCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHH----------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-ChhhhHHHHHHHHHHH-HHHhccccHHHHHHHH----------------------hHHHHHHHHHH
Confidence 7777777777753 1111111111111111 1111111222222111 12233444444
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcC--C-----hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 009977 226 KEMKKSQMSYPNLITYSTLIDGLCKNG--R-----FREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIME 298 (521)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 298 (521)
+.+...-.. .+...|...+.--...+ - .+.+..+|++++.. .+.+...|...+..+.+.|+.++|..+++
T Consensus 161 ~~~~~~~~~-~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~e 237 (493)
T 2uy1_A 161 QQIQPLIRG-WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVE 237 (493)
T ss_dssp HHHHHHHHT-CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhh-ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444321110 23445655554422211 1 34567788888775 35567778888888888899999999999
Q ss_pred HHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHH
Q 009977 299 FMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFL---------LKP---DTIGYTTLINCFCRAGRVDEALEL 366 (521)
Q Consensus 299 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~---~~~~~~~l~~~~~~~~~~~~A~~~ 366 (521)
+.... +.+...+. .|....+.++. ++.+.+.- ..+ ....|...+..+.+.+..+.|..+
T Consensus 238 rAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i 308 (493)
T 2uy1_A 238 RGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKL 308 (493)
T ss_dssp HHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 98887 33332222 22221111111 22222110 001 134566667777778889999999
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 009977 367 LKEMKERGCKADIVTFNIILGGLCREG-KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGF 445 (521)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (521)
|+.+ .. ...+...|...+..-...+ +.+.|..+|+...+.-.. ++..+...+......|+.+.|..+|+.+.
T Consensus 309 ~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~---- 381 (493)
T 2uy1_A 309 FIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE---- 381 (493)
T ss_dssp HHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC----
T ss_pred HHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH----
Confidence 9998 32 1223444443333222333 699999999998875322 34556667777788899999999999973
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 446 LPHYATSNELLVRLCKAGMAEDAAIALFGLVE 477 (521)
Q Consensus 446 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 477 (521)
.....|...+..-...|+.+.+..++++..+
T Consensus 382 -k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 -KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2567788888777888999999998888763
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.18 E-value=3.6e-08 Score=87.69 Aligned_cols=233 Identities=9% Similarity=-0.009 Sum_probs=168.8
Q ss_pred CCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----Hhc--
Q 009977 180 NQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRG--TLESAFEVLKEMKKSQMSYPNLITYSTLIDGL----CKN-- 251 (521)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~-- 251 (521)
...++|+.++..++.. .+.+..+|+.-..++...| +++++++.++.+...++ .+..+|+.-...+ ...
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP--k~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE--KNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT--TCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc--ccHHHHHHHHHHHHHHHHhccc
Confidence 3446788888877642 2334667888888888888 88889998888888877 4666676655555 444
Q ss_pred -CChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC----
Q 009977 252 -GRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVD--RAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGK---- 324 (521)
Q Consensus 252 -g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 324 (521)
+++++++++++++.+.+ +-+..+|+.-.-.+.+.|.++ ++++.++.+++.. +-|..+|+.-...+...+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCCTHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 77888888888888764 667788888777777888877 8888888888876 5577777777767777666
Q ss_pred --HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCcHhHHHHHHHHHHhcCCHHHHH
Q 009977 325 --LQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDE-ALELLKEMKERG--CKADIVTFNIILGGLCREGKIEEAL 399 (521)
Q Consensus 325 --~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~ 399 (521)
++++++.++.+....+ -|...|+.+...+.+.|+..+ +..+..++.+.+ ...+...+..++..|.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 8888888888877543 368888888888888777444 445666655433 1236678888888999999999999
Q ss_pred HHHHHHHHC-CCccCHHHHHHHH
Q 009977 400 GMLEKLWYD-GIYLNKASYRIVL 421 (521)
Q Consensus 400 ~~~~~~~~~-~~~~~~~~~~~l~ 421 (521)
++++.+.+. ++ .....|+..+
T Consensus 279 ~~~~~l~~~~Dp-ir~~yW~~~~ 300 (306)
T 3dra_A 279 TVYDLLKSKYNP-IRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHTTCG-GGHHHHHHHH
T ss_pred HHHHHHHhccCh-HHHHHHHHHH
Confidence 999998863 22 2444555433
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.18 E-value=3e-10 Score=114.63 Aligned_cols=169 Identities=8% Similarity=-0.079 Sum_probs=86.5
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 009977 320 CKEGKLQEAKEVFDEMK--------NFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCR 391 (521)
Q Consensus 320 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 391 (521)
...|++++|++.++++. +.. ..+...+..+...|...|++++|+..|+++.+.... +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 44555555555555554 211 112444555555555555555555555555554332 44455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 009977 392 EGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAI 470 (521)
Q Consensus 392 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 470 (521)
.|++++|.+.|+++.+..+. +...+..+..++...|++++ ++.|+++++. .| +...+..+..++.+.|++++|..
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555554322 34455555555555555555 5555555532 33 44455555555555555555555
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHc
Q 009977 471 ALFGLVEMGFKPES-DSWALLVELICR 496 (521)
Q Consensus 471 ~~~~~~~~~~~~~~-~~~~~l~~~~~~ 496 (521)
.|+++.+. .|+. ..+..+..++..
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC-
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHc
Confidence 55555443 2332 444444444433
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.17 E-value=6.9e-09 Score=89.18 Aligned_cols=62 Identities=5% Similarity=-0.012 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009977 349 TLINCFCRAGRVDEALELLKEMKERGCKAD--IVTFNIILGGLCREGKIEEALGMLEKLWYDGI 410 (521)
Q Consensus 349 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 410 (521)
.+...|.+.|++++|+..|+++.+..+... ...+..+..+|.+.|+.++|.+.++.+...++
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 455677788888888888888887643211 24677788888888888888888888777643
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.17 E-value=1.7e-09 Score=96.73 Aligned_cols=165 Identities=12% Similarity=0.031 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHH-HH
Q 009977 94 NNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAIS-TC 172 (521)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~l 172 (521)
+...+..+...+...|++++|...|++..+.. |.+...+..+...+...|++++|++.++++... .|+..... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHHH
Confidence 33445555555555666666666666655554 344555555566666666666666666555421 22222111 11
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009977 173 LNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG 252 (521)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 252 (521)
...+...++.++|...+++.... .+.+...+..+...+...|++++|.+.|.++.+..+...+...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 12233344444444444444331 2233444555555555555555555555555444432222444444555555555
Q ss_pred ChHHHHHHHHHH
Q 009977 253 RFREAIELFEEM 264 (521)
Q Consensus 253 ~~~~A~~~~~~~ 264 (521)
+.++|...|++.
T Consensus 270 ~~~~a~~~~r~a 281 (287)
T 3qou_A 270 TGDALASXYRRQ 281 (287)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 555554444443
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.17 E-value=1.3e-09 Score=89.63 Aligned_cols=161 Identities=14% Similarity=0.044 Sum_probs=83.4
Q ss_pred HHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHH-HH
Q 009977 99 ATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNL-LI 177 (521)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~-~~ 177 (521)
..+...+...|++++|...+++..+.. |.+...+..+...+...|++++|+..|+++.... |+.......... +.
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHHHHH
Confidence 344555566666666666666666554 4455566666666666666666666666654322 122222111111 11
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009977 178 ESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREA 257 (521)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 257 (521)
..++...|...++++++. .+.+...+..+...+...|++++|...|+++.+..+...+...+..++.++...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 111122344455554431 222455566666666666666666666666665554322344555566666666666666
Q ss_pred HHHHHHHH
Q 009977 258 IELFEEMV 265 (521)
Q Consensus 258 ~~~~~~~~ 265 (521)
...|++.+
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.16 E-value=4.8e-10 Score=89.41 Aligned_cols=144 Identities=13% Similarity=0.010 Sum_probs=70.2
Q ss_pred HHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcC
Q 009977 137 MKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRG 216 (521)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 216 (521)
..++...|++++|++.+++... ..+.+...+..+..+|.+.|++++|...|+++++. .+.+..+|..+..+|.+.|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 3444555666666666665532 11112223444555555555555555555555432 1224455555555555555
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHHhcCCCCCCHHHHHHHHHHHHhCC
Q 009977 217 TLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIEL-FEEMVSKDQILPDALTYNVLIDGFCRGG 288 (521)
Q Consensus 217 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 288 (521)
++++|...|++..+..+ .+..+|..++..+.+.|++++|.+. ++++.+.. |-++..|......+...|
T Consensus 80 ~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNP--TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp CHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 55555555555555544 3455555555555555555544433 34554432 333444444444444433
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.15 E-value=2.2e-10 Score=91.39 Aligned_cols=141 Identities=11% Similarity=-0.060 Sum_probs=86.3
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009977 175 LLIESNQVDLAQNFLKYSNQHLRLKP-NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGR 253 (521)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 253 (521)
++...|++++|+..++.... ..| +...+..+...|.+.|++++|.+.|++..+..+ .+..+|..++.++...|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE--RDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCc
Confidence 34445666777766666542 223 233555667777777777777777777766665 466677777777777777
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHH-HHHHHHcCCCCCcchHHHHHHHHHhcC
Q 009977 254 FREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKI-MEFMKNNGCNPNVFNYTTLMNGFCKEG 323 (521)
Q Consensus 254 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 323 (521)
+++|+..|++.++.+ +-+...+..+...|.+.|++++|.+. ++++++.. |.++.+|......+...|
T Consensus 81 ~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 777777777776653 34556666677777777766554443 46666553 445555555555555544
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.15 E-value=8.6e-10 Score=90.80 Aligned_cols=163 Identities=14% Similarity=0.112 Sum_probs=93.5
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHH
Q 009977 132 IFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKH 211 (521)
Q Consensus 132 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 211 (521)
.+......+...|++++|+..|++.... .+.+...+..+..++...|++++|...++.+... .|+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHH
Confidence 3445666677777777777777776532 2344556666667777777777777777666432 2233333222211
Q ss_pred -HHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCH
Q 009977 212 -HCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKV 290 (521)
Q Consensus 212 -~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 290 (521)
+...+...+|...+++..+..| .+...+..+..++...|++++|+..|+++++..+...+...+..+..++...|+.
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANP--DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHhhcccchHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 1122233345666666666554 3556666666666666666666666666665432222344566666666666666
Q ss_pred HHHHHHHHHHH
Q 009977 291 DRAKKIMEFMK 301 (521)
Q Consensus 291 ~~a~~~~~~~~ 301 (521)
++|...|++.+
T Consensus 161 ~~A~~~y~~al 171 (176)
T 2r5s_A 161 NAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 66666666544
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.14 E-value=1.8e-09 Score=96.66 Aligned_cols=163 Identities=14% Similarity=0.040 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHH-HHHH
Q 009977 130 EGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCI-FNIL 208 (521)
Q Consensus 130 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l 208 (521)
...+..+...+...|++++|+..|++.... .+.+..++..+..++...|++++|...++.+... .|+... ....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~~ 191 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHHH
Confidence 344445555555555555555555554421 1223344444455555555555555555444321 222221 1112
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Q 009977 209 IKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGG 288 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 288 (521)
...+...++.++|...+++.....| .+...+..+...+...|++++|+..|++++...+-..+...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P--~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENP--EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcCC--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2223344444445555555444443 34444445555555555555555555555443211112334444444444445
Q ss_pred CHHHHHHHHHH
Q 009977 289 KVDRAKKIMEF 299 (521)
Q Consensus 289 ~~~~a~~~~~~ 299 (521)
+.++|...|++
T Consensus 270 ~~~~a~~~~r~ 280 (287)
T 3qou_A 270 TGDALASXYRR 280 (287)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCcHHHHHHH
Confidence 44444444443
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.13 E-value=1.8e-08 Score=85.59 Aligned_cols=140 Identities=14% Similarity=0.036 Sum_probs=65.5
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 009977 293 AKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAG----RVDEALELLK 368 (521)
Q Consensus 293 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~ 368 (521)
|++.|++..+.| ++..+..+...|...+++++|...|++..+.+ +...+..+...|.. + ++++|+..|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444555554432 44445555555555555555555555554432 34444444444444 3 4555555555
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCc-cCHHHHHHHHHHHHc----CCCHHHHHHHHHH
Q 009977 369 EMKERGCKADIVTFNIILGGLCR----EGKIEEALGMLEKLWYDGIY-LNKASYRIVLNFSCQ----KGELEKAIELLRL 439 (521)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 439 (521)
+..+.+ +..++..+...|.. .+++++|..+|++..+.+.. .++..+..|...|.. .+++++|+..|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554443 33444444444443 44555555555554443321 013344444444444 4445555555555
Q ss_pred HHH
Q 009977 440 MLC 442 (521)
Q Consensus 440 ~~~ 442 (521)
..+
T Consensus 155 A~~ 157 (212)
T 3rjv_A 155 SSS 157 (212)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.12 E-value=1.7e-09 Score=107.20 Aligned_cols=153 Identities=10% Similarity=-0.069 Sum_probs=113.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 009977 322 EGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGM 401 (521)
Q Consensus 322 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 401 (521)
.|++++|.+.++++.+... .+...+..+...|...|++++|+..+++..+.... +...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788899999988876422 24788888888999999999999999999887544 677888899999999999999999
Q ss_pred HHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHH
Q 009977 402 LEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKA---GMAEDAAIALFGLVE 477 (521)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 477 (521)
+++..+.... +...+..+..+|...|++++|.+.++++.+. .| +...+..+...+... |++++|...++++++
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998887543 6778888889999999999999999998864 44 677888888889888 999999999999887
Q ss_pred CC
Q 009977 478 MG 479 (521)
Q Consensus 478 ~~ 479 (521)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 64
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.11 E-value=8.4e-09 Score=87.64 Aligned_cols=176 Identities=13% Similarity=0.045 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC----CHHHHHHH
Q 009977 256 EAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEG----KLQEAKEV 331 (521)
Q Consensus 256 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~ 331 (521)
+|++.|++..+.+ +...+..+...|...+++++|+++|++..+.| ++..+..|...|.. + ++++|...
T Consensus 4 eA~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 4555666665442 45556666666666666666666666666544 44555556666655 4 66666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-CcHhHHHHHHHHHHh----cCCHHHHHHHH
Q 009977 332 FDEMKNFLLKPDTIGYTTLINCFCR----AGRVDEALELLKEMKERGCK-ADIVTFNIILGGLCR----EGKIEEALGML 402 (521)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~ 402 (521)
|++..+.+ +...+..+...|.. .+++++|+..|++..+.+.. .+..++..|...|.. .+++++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 66665532 45555555555554 55666666666666655421 014555566666665 55666666666
Q ss_pred HHHHHCCCccCHHHHHHHHHHHHcC-C-----CHHHHHHHHHHHHHCC
Q 009977 403 EKLWYDGIYLNKASYRIVLNFSCQK-G-----ELEKAIELLRLMLCRG 444 (521)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 444 (521)
++..+.+ .+...+..|...|... | ++++|...|++..+.|
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6665541 1333444455544432 2 5666666666665544
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.07 E-value=6.3e-09 Score=103.12 Aligned_cols=154 Identities=9% Similarity=-0.098 Sum_probs=87.5
Q ss_pred cCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 009977 108 YKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQN 187 (521)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 187 (521)
.|++++|.+.+++..+.. +.+...+..+...|...|++++|++.|++... ..+.+..++..+..++...|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 356677777777776654 44566666777777777777777777777653 223345566666666677777777777
Q ss_pred HHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHH
Q 009977 188 FLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKN---GRFREAIELFEEM 264 (521)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 264 (521)
.++++++. .+.+...+..+..+|.+.|++++|.+.|++..+..+ .+...+..+..++... |++++|.+.+++.
T Consensus 79 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 79 LLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP--EEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 77666542 233455666667777777777777777777666554 4556666666666666 6677777777766
Q ss_pred HhcC
Q 009977 265 VSKD 268 (521)
Q Consensus 265 ~~~~ 268 (521)
.+.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 6653
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.03 E-value=1.5e-08 Score=91.65 Aligned_cols=165 Identities=13% Similarity=0.018 Sum_probs=88.3
Q ss_pred cCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHH
Q 009977 143 CSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIE-SNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESA 221 (521)
Q Consensus 143 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 221 (521)
.|++++|.+++++...... .. +.. .+++++|...|.++ +..|...|++++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~~----------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--TS----------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQA 55 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CC----------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--cc----------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHH
Confidence 4677777777776643211 10 111 35666666665543 4566777888888
Q ss_pred HHHHHHHHhCCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--C--CHHHHHHHHHHHHhCCCHHHH
Q 009977 222 FEVLKEMKKSQMSYP----NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQIL--P--DALTYNVLIDGFCRGGKVDRA 293 (521)
Q Consensus 222 ~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a 293 (521)
...|.+......... -..+|+.++..|...|++++|+..|++.+...... + ...++..+..+|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 887777654321101 13466677777777777777777777765431000 1 12345555555555 666666
Q ss_pred HHHHHHHHHcCCCC-----CcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 294 KKIMEFMKNNGCNP-----NVFNYTTLMNGFCKEGKLQEAKEVFDEMK 336 (521)
Q Consensus 294 ~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 336 (521)
+..|++.++..... ...++..+..+|...|++++|+..|++..
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666555421000 02234444445555555555555554443
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.01 E-value=5.1e-09 Score=94.80 Aligned_cols=229 Identities=10% Similarity=0.022 Sum_probs=127.7
Q ss_pred cCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh-cCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHH
Q 009977 72 EKEPQCALEIFNTVSEQKGFNHNNATYATILDKLAR-YKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVL 150 (521)
Q Consensus 72 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 150 (521)
.|++++|.++++++.+... .. +.+ .+++++|...|++. +..|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 4677888888887643211 00 011 34555555555443 23445556666666
Q ss_pred HHHHhhccccCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHhhhc---CCCCC-cHHHHHHHHHHHHhcCChHHHH
Q 009977 151 EMFHKIHPITREKPS----LKAISTCLNLLIESNQVDLAQNFLKYSNQH---LRLKP-NTCIFNILIKHHCKRGTLESAF 222 (521)
Q Consensus 151 ~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 222 (521)
+.|.+.........+ ..++..+..+|...|++++|...+++.++- .+... ...+++.+..+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 655554322111111 234555566666666666666666655432 11111 13466777777777 8888888
Q ss_pred HHHHHHHhCCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---CCCC-HHHHHHHHHHHHhCCCHHHHH
Q 009977 223 EVLKEMKKSQMSYP----NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQ---ILPD-ALTYNVLIDGFCRGGKVDRAK 294 (521)
Q Consensus 223 ~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~-~~~~~~l~~~~~~~~~~~~a~ 294 (521)
..|++......... ...++..+...+...|++++|+..|++...... ..+. ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777654322101 145677778888888888888888877765311 1111 235666667777778888888
Q ss_pred HHHHHHHHcCCCC--Cc---chHHHHHHHHHhcCCHHHHHHH
Q 009977 295 KIMEFMKNNGCNP--NV---FNYTTLMNGFCKEGKLQEAKEV 331 (521)
Q Consensus 295 ~~~~~~~~~~~~~--~~---~~~~~l~~~~~~~~~~~~A~~~ 331 (521)
..|++.. .. +. +. .....++..+ ..|+.+.+.++
T Consensus 216 ~~~~~al-~~-p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SI-PGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TS-TTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CC-CCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 8888777 42 21 11 1233444444 56776666553
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.98 E-value=4.4e-07 Score=81.57 Aligned_cols=80 Identities=9% Similarity=0.056 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-C-ChHHHHH
Q 009977 183 DLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRG-TLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKN-G-RFREAIE 259 (521)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~~ 259 (521)
++|+++++.++.. .+.+..+|+.-..++...| .+++++++++.+....+ .+..+|+.-...+... + +++++++
T Consensus 71 e~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP--Kny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 71 ERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL--KSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred HHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 4455555544431 1223334444444444444 24555555555554444 3444444444444443 3 4445555
Q ss_pred HHHHHHh
Q 009977 260 LFEEMVS 266 (521)
Q Consensus 260 ~~~~~~~ 266 (521)
+++++++
T Consensus 147 ~~~k~L~ 153 (349)
T 3q7a_A 147 YIHGSLL 153 (349)
T ss_dssp HHHHHTS
T ss_pred HHHHHHH
Confidence 5555444
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.97 E-value=1.5e-07 Score=84.55 Aligned_cols=163 Identities=12% Similarity=0.058 Sum_probs=82.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCcH----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC----HHHHHHH
Q 009977 173 LNLLIESNQVDLAQNFLKYSNQHLRLKPNT----CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN----LITYSTL 244 (521)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l 244 (521)
+..+...|++++|..++++..+.....|+. ..+..+...+...|++++|+..|++.........+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 445555666666666666655432222331 12334555555666666666666666653322122 2346666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCC-cchHHH
Q 009977 245 IDGLCKNGRFREAIELFEEMVSKD----QILP-DALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG----CNPN-VFNYTT 314 (521)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~ 314 (521)
+..|...|++++|+..|+++++.. +..+ ...++..+...|.+.|++++|...+++.++.. ..+. ..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 666666666666666666665310 0111 12245556666666666666666665554321 0111 234455
Q ss_pred HHHHHHhcC-CHHHHHHHHHHH
Q 009977 315 LMNGFCKEG-KLQEAKEVFDEM 335 (521)
Q Consensus 315 l~~~~~~~~-~~~~A~~~~~~~ 335 (521)
++.+|.+.| ++++|.+.++++
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 555555555 345555555544
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.95 E-value=7.3e-07 Score=80.13 Aligned_cols=166 Identities=10% Similarity=0.030 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC-C-CHHHHHH
Q 009977 219 ESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG-RFREAIELFEEMVSKDQILPDALTYNVLIDGFCRG-G-KVDRAKK 295 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~ 295 (521)
++|+++++++...++ .+..+|+.-...+...| .+++++++++.++..+ +-+..+|+.-...+... + +++++++
T Consensus 71 e~AL~lt~~~L~~nP--~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 71 ERALELTEIIVRMNP--AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred HHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 445555555544444 34444444444444444 2455555555554432 33344444444444333 3 4445555
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------H
Q 009977 296 IMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQ--------EAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGR-------V 360 (521)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~ 360 (521)
+++.+++.. +.|..+|+.-..++.+.|.++ ++++.++++.+..+. |..+|+.....+.+.+. +
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHH
Confidence 555544433 233334433333333333332 444444444443221 34444444444444333 3
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 009977 361 DEALELLKEMKERGCKADIVTFNIILGGLCR 391 (521)
Q Consensus 361 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 391 (521)
+++++.+++++...+. |...|+.+-..+.+
T Consensus 225 ~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 225 QDELIYILKSIHLIPH-NVSAWNYLRGFLKH 254 (349)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 4455555544444333 44444444333333
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.95 E-value=3.2e-08 Score=75.92 Aligned_cols=98 Identities=17% Similarity=0.055 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 009977 203 CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLID 282 (521)
Q Consensus 203 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (521)
..+...+..|.+.|++++|++.|++..+..+ .+...|..++.++...|++++|+..|++.++.+ +.+...|..+..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP--ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHH
Confidence 3555566666666666666666666666555 456666666666666666666666666666553 445556666666
Q ss_pred HHHhCCCHHHHHHHHHHHHHcC
Q 009977 283 GFCRGGKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~ 304 (521)
++...|++++|++.|++.++..
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHHHHHHHC
Confidence 6666666666666666666653
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.93 E-value=1.6e-08 Score=90.06 Aligned_cols=193 Identities=12% Similarity=0.009 Sum_probs=89.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 009977 310 FNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGL 389 (521)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 389 (521)
..+..++..+...|++++|+..|+++..... .+...|..+..+|...|++++|+..+++..+.... +...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3444455555555555555555555554311 13455555555555556666666655555554332 445555556666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009977 390 CREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAA 469 (521)
Q Consensus 390 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 469 (521)
...|++++|...|+++.+.+.. +...+...+....+ ..++.. +..........+......+... ..|++++|.
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~ 155 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAEREREL 155 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHH
Confidence 6666666666666555543111 00001111111110 011111 1112222233333333333222 256667777
Q ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHHcc-CcHHHHHHHHHHHHHc
Q 009977 470 IALFGLVEMGFKPESD-SWALLVELICRG-RKLLFAFELLDELVIK 513 (521)
Q Consensus 470 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 513 (521)
+.+++..+. .|+.. ....+...+.+. +.+++|.++|+++.+.
T Consensus 156 ~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 776666654 34432 223333333333 5666777777766553
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.93 E-value=7.3e-08 Score=81.89 Aligned_cols=124 Identities=13% Similarity=-0.001 Sum_probs=62.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 009977 206 NILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFC 285 (521)
Q Consensus 206 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 285 (521)
..+...+...|++++|...|++... ++...|..++..+...|++++|++.|++..... +.+...+..+..++.
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQD-----PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHH
Confidence 3344445555555555555554421 344455555555555555555555555555432 334445555555555
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCc----------------chHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 286 RGGKVDRAKKIMEFMKNNGCNPNV----------------FNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 286 ~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
..|++++|...|++..+.. +.+. ..+..+..+|...|++++|...|+.+.+
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555555555555432 1111 3445555555555566666555555554
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.93 E-value=1.2e-08 Score=90.93 Aligned_cols=195 Identities=8% Similarity=-0.075 Sum_probs=112.0
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 009977 201 NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVL 280 (521)
Q Consensus 201 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 280 (521)
+...+..++..+.+.|++++|...|++.....+ .+...|..++.++...|++++|+..++++++.. +.+...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 445667777777788888888888887777665 467777778888888888888888888877652 4566777777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 009977 281 IDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRV 360 (521)
Q Consensus 281 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 360 (521)
..++...|++++|...|++..+.. +.+...+...+....+. .++.. +..........+......+... ..|++
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~ 151 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAER 151 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHH
Confidence 778888888888888887776643 11211222122221111 11111 1112222223333333333222 25677
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 009977 361 DEALELLKEMKERGCKADIVTFNIILGGLCRE-GKIEEALGMLEKLWY 407 (521)
Q Consensus 361 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 407 (521)
++|++.++...+..+. +......+...+.+. +.++++.++|.++.+
T Consensus 152 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777777766654321 222333333333333 456677777776654
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.92 E-value=1.4e-07 Score=84.72 Aligned_cols=164 Identities=12% Similarity=0.069 Sum_probs=76.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCc----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC----HHHHHH
Q 009977 172 CLNLLIESNQVDLAQNFLKYSNQHLRLKPN----TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN----LITYST 243 (521)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~ 243 (521)
.+..+...|++++|...++..++.....++ ...+..+...+...|++++|+..+++.........+ ..+|+.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 344445555555555555544432111111 112333444555566666666666665543221011 335555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh---cCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----C-CcchHH
Q 009977 244 LIDGLCKNGRFREAIELFEEMVS---KDQILP--DALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCN----P-NVFNYT 313 (521)
Q Consensus 244 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~-~~~~~~ 313 (521)
++..|...|++++|+..|+++.+ ..+..+ ...++..+...|...|++++|...+++.++.... . -..++.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 66666666666666666665552 111111 1135555555566666666666665555432100 0 023444
Q ss_pred HHHHHHHhcCCHHHH-HHHHHHH
Q 009977 314 TLMNGFCKEGKLQEA-KEVFDEM 335 (521)
Q Consensus 314 ~l~~~~~~~~~~~~A-~~~~~~~ 335 (521)
.++.+|...|++++| ...+++.
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHH
Confidence 555555555555555 4444443
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.90 E-value=1e-07 Score=85.63 Aligned_cols=162 Identities=12% Similarity=0.050 Sum_probs=87.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc-----chHHHH
Q 009977 245 IDGLCKNGRFREAIELFEEMVSKDQILPDAL----TYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNV-----FNYTTL 315 (521)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l 315 (521)
+..+...|++++|.+++++........|+.. .+..+...+...+++++|+..++++.+.....+. .+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4555666667777776666655432222211 2233455555566667777777666653211111 145666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-cHhHHHH
Q 009977 316 MNGFCKEGKLQEAKEVFDEMKN----F-LLKPD-TIGYTTLINCFCRAGRVDEALELLKEMKER----GCKA-DIVTFNI 384 (521)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~ 384 (521)
+.+|...|++++|...|+++.+ . +..+. ..++..+...|...|++++|+..+++..+. +..+ -..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6666666666666666666552 1 11111 234556666666666666666666655432 1111 1345566
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHH
Q 009977 385 ILGGLCREG-KIEEALGMLEKLW 406 (521)
Q Consensus 385 l~~~~~~~g-~~~~a~~~~~~~~ 406 (521)
+..+|...| .+++|.+.++++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 666666666 3466666666554
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.90 E-value=8.1e-08 Score=77.84 Aligned_cols=127 Identities=13% Similarity=-0.011 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
.+..++..+...|++++|...|++.....+ .+..++..++.++...|++++|+..+++..... +.+...+..+..+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 455555666666666666666666665544 355566666666666666666666666665542 3445556666666
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCcchHHH--HHHHHHhcCCHHHHHHHHHHH
Q 009977 284 FCRGGKVDRAKKIMEFMKNNGCNPNVFNYTT--LMNGFCKEGKLQEAKEVFDEM 335 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~ 335 (521)
+...|++++|...++++.+.. +.+...+.. ++..+...|++++|...+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666666665543 223333322 222244455555555555443
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.89 E-value=1.9e-07 Score=81.12 Aligned_cols=190 Identities=9% Similarity=-0.093 Sum_probs=119.9
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCCHHHHHHH-------HHHHHhcCCchHHHHHHHHhhhc------------cC-----
Q 009977 71 CEKEPQCALEIFNTVSEQKGFNHNNATYATI-------LDKLARYKKFEAVDAVLRQMTYE------------TC----- 126 (521)
Q Consensus 71 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~------------~~----- 126 (521)
..+++..|++.|.++.... +.....|..+ ..++.+.++..++...+..-... |.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 5789999999999987664 4556778877 56666666666666666665541 10
Q ss_pred ---CcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc--
Q 009977 127 ---KFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPN-- 201 (521)
Q Consensus 127 ---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 201 (521)
.........+...+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..|+..... ..|.
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~ 170 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLA 170 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccH
Confidence 00123444566677777888888888877753 2343334445555677777777777777654321 0111
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQM-SYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
..++..+..++...|++++|+..|++...... +.-....+.....++.+.|+.++|..+|+++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 23566677777777777777777777664321 1013345566666777777777777777777665
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.88 E-value=2.4e-07 Score=78.68 Aligned_cols=125 Identities=8% Similarity=-0.044 Sum_probs=74.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 009977 172 CLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKN 251 (521)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 251 (521)
+...+...|++++|...++++. .|+..++..++..|...|++++|...|++.....+ .+...|..++.++...
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--HLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHc
Confidence 3444555556666665555442 34555666666666666666666666666665554 4555666666666666
Q ss_pred CChHHHHHHHHHHHhcCCCCC--------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 252 GRFREAIELFEEMVSKDQILP--------------DALTYNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 252 g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
|++++|++.|+++.+..+..+ ....+..+..++...|++++|...|+.+.+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666666655321111 1255666666677777777777777776654
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.87 E-value=7.9e-08 Score=83.43 Aligned_cols=129 Identities=12% Similarity=-0.071 Sum_probs=63.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc
Q 009977 385 ILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP--HYATSNELLVRLCKA 462 (521)
Q Consensus 385 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~ 462 (521)
+...+...|++++|.++|+.+...+. +......+...+.+.+++++|+..|+...... .| ....+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~p--~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAGS--EHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 44455555666666666555544332 21133333344555566666666665443211 11 022444455556666
Q ss_pred CCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 463 GMAEDAAIALFGLVEMGFKPE--SDSWALLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 463 g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
|++++|+..|++.......|. .........++.+.|+.++|...|+++...+|+
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 666666666665553322132 234445555555666666666666666655543
No 130
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.87 E-value=9.3e-08 Score=73.33 Aligned_cols=98 Identities=12% Similarity=0.130 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 009977 238 LITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMN 317 (521)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 317 (521)
...+...+..+.+.|++++|++.|++.++.+ +.+...|..+..++.+.|++++|+..+++.++.. +.+...|..++.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 89 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence 4556677777777888888888887777653 5566777777777777777777777777777765 455667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 009977 318 GFCKEGKLQEAKEVFDEMKNF 338 (521)
Q Consensus 318 ~~~~~~~~~~A~~~~~~~~~~ 338 (521)
+|...|++++|.+.|++..+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 777777777777777777663
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.86 E-value=9.1e-08 Score=74.15 Aligned_cols=117 Identities=11% Similarity=-0.003 Sum_probs=71.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 009977 201 NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVL 280 (521)
Q Consensus 201 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 280 (521)
+...+..++..+...|++++|...|++..+..+ .+...+..++..+...|++++|++.++++.+.. +.+...+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP--KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHHH
Confidence 455666666666666777777776666666554 355666666666666667777776666666542 3455566666
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 009977 281 IDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKE 322 (521)
Q Consensus 281 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 322 (521)
..++...|++++|.+.+++..+.. +.+...+..+..++...
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 666666666666666666666543 23334444555544443
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.85 E-value=3.6e-08 Score=78.04 Aligned_cols=96 Identities=14% Similarity=0.015 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
.+..+...+.+.|++++|...|++.....| .+...|..++.++...|++++|+..|+++.... |.+...|..+..+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF--YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHHH
Confidence 444455555555555555555555555444 344455555555555555555555555554442 2233444455555
Q ss_pred HHhCCCHHHHHHHHHHHHHc
Q 009977 284 FCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~ 303 (521)
|...|++++|...|++.++.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 55555555555555555443
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.85 E-value=1.4e-07 Score=71.97 Aligned_cols=98 Identities=19% Similarity=0.235 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLI 281 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 281 (521)
...+..++..+...|++++|.+.++++....+ .+..++..++..+...|++++|+.+++++.... +.+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHH
Confidence 34455555555556666666666665555443 344555555555556666666666665555442 33445555555
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc
Q 009977 282 DGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
..+...|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHh
Confidence 5555555666665555555544
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.84 E-value=1.7e-07 Score=84.08 Aligned_cols=171 Identities=7% Similarity=0.023 Sum_probs=117.3
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC--CCCc--HH
Q 009977 132 IFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSL----KAISTCLNLLIESNQVDLAQNFLKYSNQHLR--LKPN--TC 203 (521)
Q Consensus 132 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~~ 203 (521)
.+...+..+...|++++|++.+++........++. ..+..+...+...|++++|...++++..... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 44455666777788888877777654322211111 1233345566777888888888887764211 1111 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH---hCCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCC-CCH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMK---KSQMSYP--NLITYSTLIDGLCKNGRFREAIELFEEMVSKD---QIL-PDA 274 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~-~~~ 274 (521)
+++.++..|...|++++|...|++.. +..+..+ ...++..++..|...|++++|+..+++.+... +.. .-.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 88899999999999999999999886 3222111 22578889999999999999999999887531 111 126
Q ss_pred HHHHHHHHHHHhCCCHHHH-HHHHHHHHH
Q 009977 275 LTYNVLIDGFCRGGKVDRA-KKIMEFMKN 302 (521)
Q Consensus 275 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 302 (521)
.+|..+..+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 777877654
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.84 E-value=1.2e-07 Score=76.81 Aligned_cols=128 Identities=13% Similarity=0.053 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009977 168 AISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDG 247 (521)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (521)
.+..+...+...|++++|...++.+++. .+.+..++..++..+...|++++|...+++..+..+ .+...|..++.+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHH
Confidence 3445556666677777777777766542 233566777788888888888888888888877665 467778888888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHH
Q 009977 248 LCKNGRFREAIELFEEMVSKDQILPDALTY--NVLIDGFCRGGKVDRAKKIMEFMK 301 (521)
Q Consensus 248 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~ 301 (521)
+...|++++|...|+++.... +.+...+ ...+..+...|++++|...+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888888888888887763 3344444 333444667788888888777654
No 136
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.84 E-value=1.6e-06 Score=77.54 Aligned_cols=169 Identities=8% Similarity=0.014 Sum_probs=94.1
Q ss_pred HHhcCChH-HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHcCCCCCcchHHHHH
Q 009977 248 LCKNGRFR-EAIELFEEMVSKDQILPDALTYNVLIDGFCRGGK----------VDRAKKIMEFMKNNGCNPNVFNYTTLM 316 (521)
Q Consensus 248 ~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~ 316 (521)
..+.|.++ +|+++++.++..+ |-+...|+.--..+...+. +++++.+++.++... +.+..+|+.-.
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~ 115 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC 115 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34556554 6788888887653 4445556555444443332 456666666666554 44555666555
Q ss_pred HHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-
Q 009977 317 NGFCKEG--KLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGR-VDEALELLKEMKERGCKADIVTFNIILGGLCRE- 392 (521)
Q Consensus 317 ~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 392 (521)
.++...+ .+++++.+++.+.+.... +..+|+.-...+...|. ++++++.++.+++..+. |..+|+.....+...
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHS
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhh
Confidence 5555555 366666666666654322 55666655555555565 46666666666666544 555665555554443
Q ss_pred -------------CCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 009977 393 -------------GKIEEALGMLEKLWYDGIYLNKASYRIVLN 422 (521)
Q Consensus 393 -------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 422 (521)
+.++++++.+.......+. |...|+.+-.
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ 235 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRW 235 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHH
T ss_pred hccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 2345555555555554333 4444443333
No 137
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.82 E-value=1.6e-08 Score=80.21 Aligned_cols=110 Identities=14% Similarity=0.052 Sum_probs=84.4
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 009977 365 ELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRG 444 (521)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (521)
..|+++.+..+. +...+..+...+...|++++|...|+++....+. +...|..+..+|...|++++|+..|++++..
T Consensus 8 ~~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l- 84 (148)
T 2vgx_A 8 GTIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM- 84 (148)
T ss_dssp CSHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred hhHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 345555544321 4556777788888889999999998888876543 6777888888888889999999999888853
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 445 FLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 445 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
.| +...+..+..++...|++++|...|++.++.
T Consensus 85 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 85 -DIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp -STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44 6677788888888899999999888888765
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.82 E-value=1.3e-07 Score=72.95 Aligned_cols=118 Identities=13% Similarity=0.012 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLI 281 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 281 (521)
...+..++..+...|++++|...|++.....+ .+...+..++..+...|++++|++.+++..... +.+...+..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~ 87 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP--ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHH
Confidence 34455555555566666666666665555443 345555555555666666666666666555542 33445555555
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC
Q 009977 282 DGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGK 324 (521)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 324 (521)
..+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 55555566666665555555543 2334444444444444443
No 139
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.80 E-value=7.7e-06 Score=73.19 Aligned_cols=149 Identities=9% Similarity=-0.053 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC-HHHHHHH
Q 009977 255 REAIELFEEMVSKDQILPDALTYNVLIDGFCRGG--KVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGK-LQEAKEV 331 (521)
Q Consensus 255 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~ 331 (521)
++++.+++.++..+ +-+..+|+.-...+...+ .+++++.+++.+.+.. +-|..+|+.-..++...|. ++++++.
T Consensus 91 ~~EL~~~~~~L~~~--PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 91 KAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 44444554444432 334444444444444444 2445555555555443 3344444444444444444 3455555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-----
Q 009977 332 FDEMKNFLLKPDTIGYTTLINCFCRA--------------GRVDEALELLKEMKERGCKADIVTFNIILGGLCRE----- 392 (521)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 392 (521)
+..+.+..+. |..+|+.....+... +.++++++.+.......+. |..+|+.+-..+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccc
Confidence 5554443222 344444443333332 3356666677666665544 555555444433333
Q ss_pred ------CCHHHHHHHHHHHHHC
Q 009977 393 ------GKIEEALGMLEKLWYD 408 (521)
Q Consensus 393 ------g~~~~a~~~~~~~~~~ 408 (521)
+.++++++.++++.+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhh
Confidence 2345555555555554
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.80 E-value=6.4e-08 Score=76.63 Aligned_cols=98 Identities=13% Similarity=0.033 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHH
Q 009977 237 NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLM 316 (521)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 316 (521)
+...+..++..+.+.|++++|+..|+++...+ |.+...|..+..+|...|++++|+..|+++.+.. +.++..+..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 44455566666666666666666666666553 4455566666666666666666666666666654 44555666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 009977 317 NGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 317 ~~~~~~~~~~~A~~~~~~~~~ 337 (521)
.+|...|++++|...|+++.+
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666655
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.79 E-value=8.4e-08 Score=80.75 Aligned_cols=157 Identities=11% Similarity=-0.070 Sum_probs=84.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CcHhHHHHHHHHHHhcCC
Q 009977 320 CKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKER----GCK-ADIVTFNIILGGLCREGK 394 (521)
Q Consensus 320 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~ 394 (521)
...|++++|.++++.+.. ........+..+...+...|++++|...+++..+. +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 346777777774444433 11123556666666777777777777777766542 111 123455666666667777
Q ss_pred HHHHHHHHHHHHHC----CCcc--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC---CCC--CHHHHHHHHHHHHhcC
Q 009977 395 IEEALGMLEKLWYD----GIYL--NKASYRIVLNFSCQKGELEKAIELLRLMLCRG---FLP--HYATSNELLVRLCKAG 463 (521)
Q Consensus 395 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~p--~~~~~~~l~~~~~~~g 463 (521)
+++|...+++.... +..+ ....+..+...+...|++++|...+++..+.. -.+ ...++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777776665543 1011 12345555666666666666666666665320 011 1222345555666666
Q ss_pred CHHHHHHHHHHHHH
Q 009977 464 MAEDAAIALFGLVE 477 (521)
Q Consensus 464 ~~~~a~~~~~~~~~ 477 (521)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666655543
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.79 E-value=4.1e-08 Score=80.71 Aligned_cols=118 Identities=8% Similarity=0.149 Sum_probs=55.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHhCCCH--H
Q 009977 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG-FCRGGKV--D 291 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 291 (521)
.|++++|...+++.....+ .+...|..++..+...|++++|+..|+++.... +.+...+..+..+ +...|++ +
T Consensus 23 ~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANP--QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp ----CCCCHHHHHHHHHCC--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred ccCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 4445555555555444443 344455555555555555555555555554432 2334444444444 4445554 5
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 292 RAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 292 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
+|...++.+.+.. +.+...+..++.+|...|++++|...|+++.+
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 5555555555443 23344444455555555555555555555444
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.77 E-value=5e-08 Score=77.34 Aligned_cols=98 Identities=12% Similarity=0.042 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLI 281 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 281 (521)
...+..+...+...|++++|...|++.....+ .+...|..+..++...|++++|+..|++++... +.+...+..+.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg 96 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH--YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHH
Confidence 33455555555555555555555555555544 355555555555555555555555555555442 33344455555
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc
Q 009977 282 DGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
.+|...|++++|...|+..++.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555555543
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.77 E-value=1.7e-07 Score=78.85 Aligned_cols=156 Identities=11% Similarity=-0.058 Sum_probs=73.8
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCC
Q 009977 178 ESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKS----QMSYPNLITYSTLIDGLCKNGR 253 (521)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~ 253 (521)
..|++++|.+.++.+.. .......++..+...+...|++++|...+++.... +.......++..+...+...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 34555555553333321 11123445666666666666666666666665441 1100223445556666666666
Q ss_pred hHHHHHHHHHHHhc---CCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCC----cchHHHHHHHHHhcC
Q 009977 254 FREAIELFEEMVSK---DQIL--PDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGC-NPN----VFNYTTLMNGFCKEG 323 (521)
Q Consensus 254 ~~~A~~~~~~~~~~---~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~ 323 (521)
+++|++.+++.... .+.. .....+..+...+...|++++|...+++..+... ..+ ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 66666666655443 1101 1123345555555566666666666655543210 001 112344445555555
Q ss_pred CHHHHHHHHHHH
Q 009977 324 KLQEAKEVFDEM 335 (521)
Q Consensus 324 ~~~~A~~~~~~~ 335 (521)
++++|...+++.
T Consensus 162 ~~~~A~~~~~~a 173 (203)
T 3gw4_A 162 NLLEAQQHWLRA 173 (203)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 555555555444
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.74 E-value=2.6e-07 Score=84.54 Aligned_cols=131 Identities=15% Similarity=0.004 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN-------------LITYSTLIDGLCKNGRFREAIELFEEMVSKD 268 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 268 (521)
...+..+...|.+.|++++|...|++.....+..++ ..+|..+..++.+.|++++|+..|+++++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345566666666666666666666666665542110 4566666666666777777777776666653
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH-HHHHHHH
Q 009977 269 QILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEA-KEVFDEM 335 (521)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~ 335 (521)
+.+...+..+..+|...|++++|+..|+++++.. +.+..++..+..++...|+.++| ...+..|
T Consensus 227 --p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 227 --SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666666666654 34455666666666666666665 2344443
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.74 E-value=2.4e-07 Score=84.75 Aligned_cols=122 Identities=11% Similarity=-0.021 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009977 344 TIGYTTLINCFCRAGRVDEALELLKEMKERGCKAD--------------IVTFNIILGGLCREGKIEEALGMLEKLWYDG 409 (521)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 409 (521)
...+..+...|.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|+..++++.+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45566666667777777777777777666543211 2344444444444444444444444444432
Q ss_pred CccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 009977 410 IYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDA 468 (521)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 468 (521)
+. +...|..+..+|...|++++|+..|+++++. .| +...+..+..++.+.|+.++|
T Consensus 227 p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 SN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 22 3344444444444444444444444444432 22 333444444444444444444
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.73 E-value=4e-07 Score=70.41 Aligned_cols=120 Identities=8% Similarity=-0.022 Sum_probs=85.9
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHH
Q 009977 163 KPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYS 242 (521)
Q Consensus 163 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 242 (521)
+.+...+..+...+...|++++|...++++.+. .+.+..++..++..+...|++++|...+++..+..+ .+...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~ 88 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP--TFIKGYT 88 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CchHHHH
Confidence 334455666777777777777777777777642 233567788888888888888888888888877665 4677788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Q 009977 243 TLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGG 288 (521)
Q Consensus 243 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 288 (521)
.++.++...|++++|++.|++..... +.+...+..+..++...|
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhc
Confidence 88888888888888888888887653 334455666666655444
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.72 E-value=5.8e-07 Score=68.50 Aligned_cols=113 Identities=19% Similarity=0.147 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009977 167 KAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLID 246 (521)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 246 (521)
..+..+...+...|++++|...++++.+. .+.+..++..++..+...|++++|...++++....+ .+..++..++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~ 85 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--ccHHHHHHHHH
Confidence 44555566666666666666666666542 233566777777778888888888888887777655 46677777788
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 009977 247 GLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFC 285 (521)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 285 (521)
.+...|++++|...|+++.... +.+...+..+...+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 8888888888888888877653 344555555555443
No 149
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.72 E-value=2e-07 Score=76.50 Aligned_cols=121 Identities=7% Similarity=0.046 Sum_probs=82.6
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhcCCh--
Q 009977 178 ESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDG-LCKNGRF-- 254 (521)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 254 (521)
..|++++|...++..++. .+.+...+..++..|...|++++|...|++.....+ .+...+..++.+ +...|++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG--ENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTCCC
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCCcch
Confidence 346666666666666542 234566777777777778888888888877776665 466677777777 6677777
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009977 255 REAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 255 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (521)
++|+..|+++.... +.+...+..+...+...|++++|...++.+.+..
T Consensus 98 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888777653 4456677777777778888888888888777754
No 150
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.70 E-value=5.3e-07 Score=69.41 Aligned_cols=117 Identities=13% Similarity=0.032 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009977 167 KAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLID 246 (521)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 246 (521)
..+..+...+...|++++|...++++... .+.+...+..++..+...|++++|...+++.....+ .+...+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~ 88 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP--AYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc--cCHHHHHHHHH
Confidence 34555555666666666666666666542 233566677777777777777777777777776654 45667777777
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Q 009977 247 GLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGK 289 (521)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 289 (521)
.+...|++++|...|++..... +.+...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHhc
Confidence 7777777777777777776653 3455666666666665554
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.70 E-value=3.4e-07 Score=72.00 Aligned_cols=98 Identities=10% Similarity=0.005 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLI 281 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 281 (521)
...+..+...+.+.|++++|...|++.....+ .+...|..+..++...|++++|+..|++....+ +.+...+..+.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg 93 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDH--YDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHH
Confidence 44566677777778888888888887777665 567777777777888888888888888777763 44556677777
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc
Q 009977 282 DGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
.++...|++++|...|+..++.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 7777888888888888777765
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.69 E-value=9.7e-07 Score=66.45 Aligned_cols=96 Identities=17% Similarity=0.092 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
.+..++..+...|++++|...|++.....+ .+...+..++..+...|++++|...+++..... +.+...+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~ 81 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP--HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 444455555555555555555555554443 344455555555555555555555555555432 2334445555555
Q ss_pred HHhCCCHHHHHHHHHHHHHc
Q 009977 284 FCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~ 303 (521)
+...|++++|.+.++...+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 55555555555555555543
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.68 E-value=4.7e-07 Score=69.50 Aligned_cols=97 Identities=14% Similarity=0.103 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CCC----HHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQI-LPD----ALTYN 278 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~ 278 (521)
++..++..+.+.|++++|++.|++..+..| .+...|..++.+|...|++++|++.+++.++..+. .++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p--~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDP--SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 444555566666666666666666555554 35555666666666666666666666555543110 111 12344
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Q 009977 279 VLIDGFCRGGKVDRAKKIMEFMKN 302 (521)
Q Consensus 279 ~l~~~~~~~~~~~~a~~~~~~~~~ 302 (521)
.+..++...|++++|++.|++.++
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555555555555555555544
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.65 E-value=4.9e-08 Score=81.92 Aligned_cols=87 Identities=14% Similarity=-0.070 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 009977 203 CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLID 282 (521)
Q Consensus 203 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (521)
.++..+..+|...|++++|+..+++.....+ .+...+..++.++...|++++|++.|++..... +.+...+..+..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 164 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK--NNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHH
Confidence 3455555555555566666555555555443 345555555555555555555555555555442 233444444444
Q ss_pred HHHhCCCHHHH
Q 009977 283 GFCRGGKVDRA 293 (521)
Q Consensus 283 ~~~~~~~~~~a 293 (521)
++...++..++
T Consensus 165 ~~~~~~~~~~~ 175 (198)
T 2fbn_A 165 CVNKLKEARKK 175 (198)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 155
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.65 E-value=2.5e-07 Score=70.29 Aligned_cols=100 Identities=13% Similarity=-0.058 Sum_probs=72.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009977 417 YRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELIC 495 (521)
Q Consensus 417 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 495 (521)
+..+...+.+.|++++|+..++++++. .| +...+..+..++...|++++|+..++++++.. +.+...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 445566677888888888888888853 45 67777788888888888888888888888763 334577778888888
Q ss_pred ccCcHHHHHHHHHHHHHcCccCcc
Q 009977 496 RGRKLLFAFELLDELVIKESGTIQ 519 (521)
Q Consensus 496 ~~g~~~~A~~~~~~m~~~~~~~~~ 519 (521)
..|++++|...++++++.+|....
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCCC
Confidence 888888888888888887776543
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.65 E-value=1e-06 Score=67.46 Aligned_cols=95 Identities=18% Similarity=0.083 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
.+..+...+.+.|++++|+..|++..+..+ .+...|..++.++...|++++|+..|++.++.+ +.+...+..+..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 81 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 444445555555555555555555555443 344555555555555555555555555555442 3334455555555
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 009977 284 FCRGGKVDRAKKIMEFMKN 302 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~ 302 (521)
+...|++++|...|++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 5555555555555555544
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.64 E-value=9.2e-07 Score=71.44 Aligned_cols=99 Identities=14% Similarity=-0.012 Sum_probs=62.7
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 009977 201 NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVL 280 (521)
Q Consensus 201 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 280 (521)
+...+..+...+.+.|++++|+..|++..+..+ .+...|..+..++...|++++|+..|++.+..+ +.+...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP--ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 344566666666666666666666666666554 356666666666666666666666666666553 3445566666
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHc
Q 009977 281 IDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 281 ~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
..+|...|++++|...|++.++.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 66666666666666666666654
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.63 E-value=4.3e-07 Score=69.70 Aligned_cols=95 Identities=8% Similarity=-0.072 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCCC----HHHHHHH
Q 009977 382 FNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRG--FLPH----YATSNEL 455 (521)
Q Consensus 382 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~----~~~~~~l 455 (521)
+..++..+.+.|++++|+..|+++.+..+. +...|..+..+|...|++++|+..++++++.. ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 334444444444444444444444443222 33444444444444444444444444444210 0000 1234444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 009977 456 LVRLCKAGMAEDAAIALFGLVE 477 (521)
Q Consensus 456 ~~~~~~~g~~~~a~~~~~~~~~ 477 (521)
..++...|++++|+..|++.++
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4555555555555555555544
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.63 E-value=4.2e-07 Score=71.46 Aligned_cols=98 Identities=11% Similarity=-0.097 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009977 167 KAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLID 246 (521)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 246 (521)
..+..+...+...|++++|...|+.++.. .+.+...|..+..+|...|++++|+..|++.....+ .+...|..++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~ 94 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI--NEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCcHHHHHHHH
Confidence 44555566677777777777777777642 334667788888888888888888888888887776 46667777888
Q ss_pred HHHhcCChHHHHHHHHHHHhcC
Q 009977 247 GLCKNGRFREAIELFEEMVSKD 268 (521)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~~~~ 268 (521)
++...|++++|++.|++.....
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888877653
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.63 E-value=7.4e-07 Score=72.01 Aligned_cols=106 Identities=12% Similarity=0.019 Sum_probs=82.6
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHH
Q 009977 164 PSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYST 243 (521)
Q Consensus 164 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 243 (521)
.+...+..+...+...|++++|...|+++++. .+.+...|..+..+|.+.|++++|+..|++..+..+ .+...|..
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~ 84 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP--KYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHH
Confidence 34456666777777888888888888877653 234677888888889999999999999998888776 57888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 009977 244 LIDGLCKNGRFREAIELFEEMVSKDQILPD 273 (521)
Q Consensus 244 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 273 (521)
+..++...|++++|+..|++.+...+..++
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 889999999999999999988876543444
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.61 E-value=1.5e-06 Score=66.47 Aligned_cols=97 Identities=12% Similarity=0.049 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 009977 238 LITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMN 317 (521)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 317 (521)
...|..++..+...|++++|+..|++.++.. +.+...|..+..++.+.|++++|+..+++.++.. +.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4556667777777888888888887777653 4566777777777777777777777777777764 445667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 009977 318 GFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 318 ~~~~~~~~~~A~~~~~~~~~ 337 (521)
++...|++++|...|++..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 77777777777777777665
No 162
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.60 E-value=1e-06 Score=83.94 Aligned_cols=204 Identities=7% Similarity=-0.042 Sum_probs=99.2
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCH---------------HHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCH
Q 009977 66 ISLIKCEKEPQCALEIFNTVSEQKGFNHNN---------------ATYATILDKLARYKKFEAVDAVLRQMTYETCKFHE 130 (521)
Q Consensus 66 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 130 (521)
...+.+.|++++|++.|..+++...-..+. .++..++..|...|++++|.+.+..+...-.....
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 345678899999999999887654222221 23555666677777777777766666543111111
Q ss_pred H-----HHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHH
Q 009977 131 G-----IFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIF 205 (521)
Q Consensus 131 ~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 205 (521)
. +...+...+...|++++|+++++....... .......-..++
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAK--------------------------------REKRVFLKHSLS 138 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHH--------------------------------HSSCCSSHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--------------------------------HhCccHHHHHHH
Confidence 1 112222333344556666555554321100 000111123345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCC--HHH
Q 009977 206 NILIKHHCKRGTLESAFEVLKEMKKSQM----SYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKD---QILPD--ALT 276 (521)
Q Consensus 206 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~--~~~ 276 (521)
..++..|...|++++|..+++++...-. ......++..++..|...|++++|..++++..... +.++. ...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 5555555555555555555555432110 00123445555555666666666665555543321 01111 223
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Q 009977 277 YNVLIDGFCRGGKVDRAKKIMEFMK 301 (521)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~ 301 (521)
+..+...+...+++++|...|.+..
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4444455555566666655555443
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.60 E-value=2e-06 Score=81.89 Aligned_cols=200 Identities=9% Similarity=0.057 Sum_probs=130.4
Q ss_pred HHHHHhcCCchHHHHHHHHhhhccCCcC----------------HHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCC
Q 009977 102 LDKLARYKKFEAVDAVLRQMTYETCKFH----------------EGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPS 165 (521)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 165 (521)
...+...|++++|.+.|..+.+...... ..++..++..|...|++++|.+.+.++.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~-------- 82 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST-------- 82 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH--------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------
Confidence 4456778888888888888876542111 1124445555555555555555555443
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc----HHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCCC
Q 009977 166 LKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPN----TCIFNILIKHHCKRGTLESAFEVLKEMKK----SQMSYPN 237 (521)
Q Consensus 166 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~ 237 (521)
...+..++ ..+.+.+...+...|++++|..++++... .+....-
T Consensus 83 ----------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (434)
T 4b4t_Q 83 ----------------------------EYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLK 134 (434)
T ss_dssp ----------------------------HHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSH
T ss_pred ----------------------------HHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHH
Confidence 21111111 12344455555667788888887777543 2222233
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCC---
Q 009977 238 LITYSTLIDGLCKNGRFREAIELFEEMVSKDQ----ILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN--GCNPN--- 308 (521)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~--- 308 (521)
..++..++..+...|++++|..+++++..... .+.....+..++..|...|++++|..++++.... ....+
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 214 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT 214 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH
Confidence 56788899999999999999999998865311 1223567899999999999999999999887652 11111
Q ss_pred -cchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 309 -VFNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 309 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
...+..++..+...+++++|...|.+..+
T Consensus 215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 23566777888899999999988876643
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.60 E-value=1e-06 Score=68.59 Aligned_cols=99 Identities=8% Similarity=-0.142 Sum_probs=62.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 009977 201 NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVL 280 (521)
Q Consensus 201 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 280 (521)
+...+..+...+...|++++|...|++.....+ .+...|..++.++...|++++|+..+++..... +.+...+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHH
Confidence 455666666666666666666666666666554 355666666666666666666666666666542 3445566666
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHc
Q 009977 281 IDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 281 ~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
..++...|++++|...|+++.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 66666666666666666666543
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.58 E-value=8.8e-07 Score=65.98 Aligned_cols=104 Identities=13% Similarity=0.006 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHH
Q 009977 413 NKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKP--ESDSWALL 490 (521)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l 490 (521)
+...+..+...+...|++++|...++++++.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 34556667777888888888888888887542 2366777788888888899999999988888763 23 46788888
Q ss_pred HHHHHcc-CcHHHHHHHHHHHHHcCccCc
Q 009977 491 VELICRG-RKLLFAFELLDELVIKESGTI 518 (521)
Q Consensus 491 ~~~~~~~-g~~~~A~~~~~~m~~~~~~~~ 518 (521)
..++.+. |++++|.+.++++.+.+|++.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888899 999999999999988877654
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.57 E-value=1e-06 Score=73.82 Aligned_cols=123 Identities=13% Similarity=-0.010 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN--------------LITYSTLIDGLCKNGRFREAIELFEEMVSKDQ 269 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 269 (521)
.+..+...+...|++++|...|++.....+..++ ...|..+..++...|++++|+..+++.+...
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 4555666666777777777777776664432111 2455666666666666666666666666542
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 009977 270 ILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAK 329 (521)
Q Consensus 270 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 329 (521)
+.+...+..+..++...|++++|...|++..+.. +.+..++..+..++...++.+++.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666543 334445555555555544444443
No 167
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.55 E-value=3.9e-06 Score=62.99 Aligned_cols=109 Identities=17% Similarity=0.072 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009977 167 KAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLID 246 (521)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 246 (521)
..+..+...+...|++++|...++.+... .+.+...+..++..+...|++++|...+++.....+ .+...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--DWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc--ccHHHHHHHHH
Confidence 34555566666677777777777766542 233566777777778888888888888888777665 46677777788
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 009977 247 GLCKNGRFREAIELFEEMVSKDQILPDALTYNVLI 281 (521)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 281 (521)
++...|++++|.+.+++..+.. +.+...+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 113 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE--ANNPQLKEGLQ 113 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC--CCCHHHHHHHH
Confidence 8888888888888888877653 33444444433
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=3.2e-06 Score=66.62 Aligned_cols=98 Identities=11% Similarity=-0.024 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN---LITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYN 278 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 278 (521)
...+..+...+...|++++|...|++..+..+ .+ ...|..+..++...|++++|+..+++..... +.+...+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 103 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDA--TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKALY 103 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc--cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHHH
Confidence 44455555555555555555555555554432 11 3444555555555555555555555554432 23344445
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 279 VLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 279 ~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
.+..++...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555555555555555555555443
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.54 E-value=1e-06 Score=65.57 Aligned_cols=96 Identities=10% Similarity=0.060 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--CHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILP--DALTYNVLI 281 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~ 281 (521)
.+..++..+...|++++|...|++..+..+ .+...|..++..+...|++++|++.|++..+.. +. +...+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~ 83 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP--EESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKA 83 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHH
Confidence 344445555555555555555555554443 344455555555555555555555555555432 22 344555555
Q ss_pred HHHHhC-CCHHHHHHHHHHHHHc
Q 009977 282 DGFCRG-GKVDRAKKIMEFMKNN 303 (521)
Q Consensus 282 ~~~~~~-~~~~~a~~~~~~~~~~ 303 (521)
.++... |++++|.+.++...+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 555555 5555555555555543
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.50 E-value=9.8e-07 Score=67.88 Aligned_cols=98 Identities=14% Similarity=0.153 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CCC----HHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQI-LPD----ALTYN 278 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~ 278 (521)
.+..++..+...|++++|...|++.....+ .+...+..++..+...|++++|+..++++....+. .++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP--TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 445555555556666666666665555443 34555555555555666666666665555443210 111 44455
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 279 VLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 279 ~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
.+..++...|++++|.+.|+.+.+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5555555555555555555555543
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.48 E-value=4.1e-06 Score=65.07 Aligned_cols=99 Identities=11% Similarity=0.011 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHH
Q 009977 236 PNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTL 315 (521)
Q Consensus 236 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 315 (521)
.+...|..++..+...|++++|+..|++.+... +.+...+..+..++...|++++|...++...+.. +.+...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 455666666667777777777777777666653 3455666666666666777777777666666654 3445566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 009977 316 MNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
..++...|++++|...|+++.+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666666544
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.48 E-value=1.7e-06 Score=65.68 Aligned_cols=91 Identities=12% Similarity=-0.065 Sum_probs=42.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC
Q 009977 208 LIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRG 287 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (521)
+...+.+.|++++|...|++..+..+ .+...|..+..++...|++++|+..|++.++.+ +.+...+..+..++...
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEP--EREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 33444444455555554444444443 244444444444444555555555554444432 22334444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 009977 288 GKVDRAKKIMEFMKN 302 (521)
Q Consensus 288 ~~~~~a~~~~~~~~~ 302 (521)
|++++|+..++++++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=8.9e-06 Score=64.04 Aligned_cols=111 Identities=14% Similarity=0.058 Sum_probs=78.9
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHH
Q 009977 164 PSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPN----TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLI 239 (521)
Q Consensus 164 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 239 (521)
.+...+..+...+...|++++|...++.+.+ ..|+ ...+..+...|...|++++|...+++.....+ .+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~ 100 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG--GDVK 100 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--CCHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc--cCHH
Confidence 3445566666777777777777777777663 3344 56777788888888888888888888877665 4677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 009977 240 TYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLI 281 (521)
Q Consensus 240 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 281 (521)
.|..+..++...|++++|...|++..... +.+...+..+.
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~ 140 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLE--PKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHH
Confidence 78888888888888888888888887753 33444444333
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.45 E-value=2e-06 Score=66.03 Aligned_cols=97 Identities=15% Similarity=0.237 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-------cc
Q 009977 238 LITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPN-------VF 310 (521)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~ 310 (521)
...|..++..+...|++++|+..|++..... +.+...+..+...+...|++++|...++.+.+.. +.+ ..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHH
Confidence 4456667777777778888888777777653 4456667777777777777777777777776543 111 44
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 311 NYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
++..++.++...|++++|.+.|+.+.+
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 556666666666667666666666665
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.41 E-value=2e-06 Score=69.03 Aligned_cols=133 Identities=13% Similarity=-0.066 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCc-cC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHH
Q 009977 381 TFNIILGGLCREGKIEEALGMLEKLWYDGIY-LN----KASYRIVLNFSCQKGELEKAIELLRLMLCR----GFLP-HYA 450 (521)
Q Consensus 381 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~ 450 (521)
++..+...+...|++++|...+++....... .+ ..++..+...+...|++++|...++++.+. +-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444455555555555555544432100 01 124445555556666666666666655532 0000 133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 009977 451 TSNELLVRLCKAGMAEDAAIALFGLVEM----GFKPE-SDSWALLVELICRGRKLLFAFELLDELVIK 513 (521)
Q Consensus 451 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 513 (521)
++..+...+...|++++|...+++..+. +..+. ...+..+...+...|++++|.+.+++.++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4555666667777777777777666532 11111 245666777777888888888888877654
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.40 E-value=1.2e-05 Score=61.69 Aligned_cols=92 Identities=15% Similarity=0.091 Sum_probs=44.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---HHHHHHHH
Q 009977 208 LIKHHCKRGTLESAFEVLKEMKKSQMSYPNL---ITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD---ALTYNVLI 281 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~ 281 (521)
++..+...|++++|...|+++.+..+. +. ..+..++.++...|++++|+..|+++.... +.+ ...+..+.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la 83 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN--GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHH
Confidence 344444555555555555555444331 11 344445555555555555555555554432 112 33444455
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc
Q 009977 282 DGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
.++...|++++|...|+.+.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555555443
No 177
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.40 E-value=2.2e-06 Score=67.04 Aligned_cols=68 Identities=9% Similarity=-0.053 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCH-HHH----HHHHHHHHccCcHHHHHHHHHHHHHcCccCc
Q 009977 451 TSNELLVRLCKAGMAEDAAIALFGLVEM-----GFKPES-DSW----ALLVELICRGRKLLFAFELLDELVIKESGTI 518 (521)
Q Consensus 451 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~-~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 518 (521)
.|..+..++.+.|++++|+..+++.++. .+.|+. ..| .....++...|++++|+..|++.++..|++.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 5666666666777777777777666653 113443 566 6777777788888888888888777666543
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.39 E-value=5.3e-06 Score=79.35 Aligned_cols=125 Identities=13% Similarity=-0.030 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN-------------LITYSTLIDGLCKNGRFREAIELFEEMVSKD 268 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 268 (521)
...+..+...+.+.|++++|...|++..+..+..++ ...|..+..+|.+.|++++|+..|++++...
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 335666667777777777777777776665442111 4556666666666666666666666666553
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 009977 269 QILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAK 329 (521)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 329 (521)
+.+...|..+..+|...|++++|+..|+++++.. +.+..++..+..++.+.++.+++.
T Consensus 348 --p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 --SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred --CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666553 334455556666666666555544
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.37 E-value=4.3e-06 Score=64.14 Aligned_cols=94 Identities=13% Similarity=0.034 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-C---HHHHHH
Q 009977 382 FNIILGGLCREGKIEEALGMLEKLWYDGIYLNK---ASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-H---YATSNE 454 (521)
Q Consensus 382 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~---~~~~~~ 454 (521)
+..+...+...|++++|...|+.+....+. +. ..+..+..++...|++++|...|+++++. .| + ...+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHH
Confidence 445666777888888888888888775432 22 46667777888888888888888888754 34 2 566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 455 LLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 455 l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
+..++...|++++|...|+++.+.
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778888888888888888888765
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.36 E-value=4.6e-06 Score=79.78 Aligned_cols=150 Identities=12% Similarity=-0.014 Sum_probs=99.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--------------HhHHHHHH
Q 009977 322 EGKLQEAKEVFDEMKNFLLKP-DTIGYTTLINCFCRAGRVDEALELLKEMKERGCKAD--------------IVTFNIIL 386 (521)
Q Consensus 322 ~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~ 386 (521)
.+++++|...|+..... .| ....|..+...|.+.|++++|+..|++.++...... ...|..+.
T Consensus 247 l~~~~~A~~~~~~~~~~--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKE--KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEECCCCGGGSCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 34455555555433321 12 356778888889999999999999999887643311 46677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH
Q 009977 387 GGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMA 465 (521)
Q Consensus 387 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 465 (521)
.+|.+.|++++|+..+++++..... +...|..+..+|...|++++|+..|+++++ +.| +...+..+..++.+.++.
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHH
Confidence 7777888888888888877776443 566777777777778888888888877774 445 555666677777777777
Q ss_pred HHHHH-HHHHHH
Q 009977 466 EDAAI-ALFGLV 476 (521)
Q Consensus 466 ~~a~~-~~~~~~ 476 (521)
+++.+ .+.+|.
T Consensus 402 ~~a~~~~~~~~f 413 (457)
T 1kt0_A 402 NERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 66553 344444
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.35 E-value=1.7e-06 Score=83.10 Aligned_cols=121 Identities=12% Similarity=-0.010 Sum_probs=79.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC
Q 009977 208 LIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRG 287 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (521)
+...+.+.|++++|.+.|++..+..+ .+..+|..++.++.+.|++++|++.++++.+.. +.+...+..+..+|...
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 34455667777777777777776655 456777777777777777777777777777653 44566777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcchHHHHHHH--HHhcCCHHHHHHHHH
Q 009977 288 GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNG--FCKEGKLQEAKEVFD 333 (521)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~ 333 (521)
|++++|++.++++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 88 g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777777654 3344455555555 666777777777776
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.35 E-value=4.5e-06 Score=66.89 Aligned_cols=138 Identities=11% Similarity=-0.007 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhccCC-cC----HHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHH
Q 009977 97 TYATILDKLARYKKFEAVDAVLRQMTYETCK-FH----EGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAIST 171 (521)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 171 (521)
++..+...+...|++++|...+++..+.... .+ ..++..+...|...|++++|++.+++.........+.
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----- 85 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR----- 85 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc-----
Confidence 4455555556666666666666555433110 00 1244455555555666666666555543211100000
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CCCCHHHHHHHHHH
Q 009977 172 CLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQM----SYPNLITYSTLIDG 247 (521)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~ 247 (521)
.....++..+...+...|++++|.+.+++...... ......++..+...
T Consensus 86 ---------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 138 (164)
T 3ro3_A 86 ---------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA 138 (164)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHH
Confidence 00123445555555566666666655555433211 00113345556666
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 009977 248 LCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 248 ~~~~g~~~~A~~~~~~~~~ 266 (521)
+...|++++|.+.+++..+
T Consensus 139 ~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 139 YTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 6666777777666666554
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.34 E-value=5.6e-06 Score=76.55 Aligned_cols=120 Identities=12% Similarity=-0.004 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh----------------CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKK----------------SQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
.+..+...+.+.|++++|++.|++..+ ..+ .+..+|..+..++.+.|++++|++.++++++.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~--~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP--VALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHH--HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 355556666666666666666666554 111 23445555555566666666666666665544
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH
Q 009977 268 DQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEA 328 (521)
Q Consensus 268 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 328 (521)
. +.+...+..+..+|...|++++|+..|+++.+.. +.+...+..+..++...++.+++
T Consensus 303 ~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 303 D--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp C--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred C--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 3345555555555556666666666665555543 23344444444444444444433
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.34 E-value=1.2e-06 Score=66.02 Aligned_cols=88 Identities=15% Similarity=0.013 Sum_probs=55.6
Q ss_pred cCCHHHHHHHHHHhhhcCC-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009977 179 SNQVDLAQNFLKYSNQHLR-LKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREA 257 (521)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 257 (521)
.|++++|+..|+++++... .+.+..++..+..+|...|++++|+..|++..+..+ .+...+..++.++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP--NHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHcCCHHHH
Confidence 3556666666666653200 122345677777777777777777777777777665 4566777777777777777777
Q ss_pred HHHHHHHHhcC
Q 009977 258 IELFEEMVSKD 268 (521)
Q Consensus 258 ~~~~~~~~~~~ 268 (521)
+..|++.+...
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 77777776653
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.32 E-value=4.6e-06 Score=67.08 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 238 LITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
...|..+..+|.+.|++++|+..+++++..+ +.+...|..+..+|...|++++|...|+..++.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3455556666666666666666666665542 344555666666666666666666666666554
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.32 E-value=5.8e-07 Score=67.86 Aligned_cols=86 Identities=21% Similarity=0.086 Sum_probs=61.4
Q ss_pred hcCCHHHHHHHHHHHHHCC--CccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 009977 391 REGKIEEALGMLEKLWYDG--IYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAED 467 (521)
Q Consensus 391 ~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 467 (521)
..|++++|+..|+++.+.+ -+-+...+..+..+|...|++++|+..|+++++. .| +...+..+..++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHH
Confidence 3577888888888887763 1224566777788888888888888888888854 34 57777778888888888888
Q ss_pred HHHHHHHHHHC
Q 009977 468 AAIALFGLVEM 478 (521)
Q Consensus 468 a~~~~~~~~~~ 478 (521)
|...+++.++.
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888887764
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.30 E-value=4.4e-06 Score=67.20 Aligned_cols=103 Identities=16% Similarity=0.017 Sum_probs=81.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CC--------cc-CHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 009977 378 DIVTFNIILGGLCREGKIEEALGMLEKLWYD--------GI--------YL-NKASYRIVLNFSCQKGELEKAIELLRLM 440 (521)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~--------~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 440 (521)
....+......+.+.|++++|+..|.+.... .. .| +...|..+..+|.+.|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3567788888999999999999999998875 10 11 2356778888888999999999999998
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009977 441 LCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES 484 (521)
Q Consensus 441 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 484 (521)
++. .| +...|..+..++...|++++|...|++.++. .|+.
T Consensus 90 l~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 90 LKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred Hhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 864 45 6778888888999999999999999988876 3554
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.30 E-value=1.2e-05 Score=74.20 Aligned_cols=139 Identities=8% Similarity=-0.093 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 009977 344 TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNF 423 (521)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (521)
...+..+...+.+.|++++|+..|++.++.- +... ..... +...... ..+...|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~-------~~~~~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAED-------ADGAKLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCH-------HHHGGGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccCh-------HHHHHHH-HHHHHHHHHHHHH
Confidence 4556666777777777777777777766530 0000 00011 1111110 1134567777778
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHH
Q 009977 424 SCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLF 502 (521)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 502 (521)
|.+.|++++|+..++++++ +.| +...+..+..+|...|++++|...|+++++.. +.+...+..+..++...++.++
T Consensus 283 ~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888885 345 67777778888888888888888888887763 2345667777777777777777
Q ss_pred HHH
Q 009977 503 AFE 505 (521)
Q Consensus 503 A~~ 505 (521)
+.+
T Consensus 360 a~k 362 (370)
T 1ihg_A 360 KEK 362 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.27 E-value=6.2e-05 Score=73.63 Aligned_cols=156 Identities=13% Similarity=0.069 Sum_probs=121.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcC
Q 009977 358 GRVDEALELLKEMKERGCKADIVTFNIILGGLCREGK----------IEEALGMLEKLWYDGIYLNKASYRIVLNFSCQK 427 (521)
Q Consensus 358 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (521)
...++|++.++.+.+..+. +..+|+.-..++...|+ ++++++.++.+.+..++ +..+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 3446778888888887654 56677777667766666 88899999988887665 778888888888888
Q ss_pred C--CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc------
Q 009977 428 G--ELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAG-MAEDAAIALFGLVEMGFKPESDSWALLVELICRG------ 497 (521)
Q Consensus 428 g--~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 497 (521)
| +++++++.++++++. +| +..+|+.-..++.+.| .++++.+.++++++.. +-+...|.....++.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccc
Confidence 8 679999999999864 45 7888888888888888 8888999888888764 44667787777666553
Q ss_pred --------CcHHHHHHHHHHHHHcCccCc
Q 009977 498 --------RKLLFAFELLDELVIKESGTI 518 (521)
Q Consensus 498 --------g~~~~A~~~~~~m~~~~~~~~ 518 (521)
+.+++|.+.+++++..+|.+.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~ 226 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQ 226 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCc
Confidence 678999999999999888753
No 190
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.24 E-value=4.2e-06 Score=80.36 Aligned_cols=118 Identities=13% Similarity=0.042 Sum_probs=79.6
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 009977 175 LLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRF 254 (521)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 254 (521)
.+.+.|++++|...++++++. .+.+..++..+..+|.+.|++++|++.+++..+..+ .+..+|..++.+|...|++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCH
Confidence 344566777777777766642 233467788888888888888888888888887765 5677788888888888888
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHH--HHhCCCHHHHHHHHH
Q 009977 255 REAIELFEEMVSKDQILPDALTYNVLIDG--FCRGGKVDRAKKIME 298 (521)
Q Consensus 255 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 298 (521)
++|++.|+++.+..+..++ .+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKD--AKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTT--HHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888776433333 34444444 777788888888777
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.24 E-value=0.00011 Score=72.01 Aligned_cols=171 Identities=10% Similarity=-0.025 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Q 009977 219 ESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGR----------FREAIELFEEMVSKDQILPDALTYNVLIDGFCRGG 288 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 288 (521)
++|++.++++...++ .+..+|+.-..++...|+ ++++++.++++...+ +-+..+|+.-..++.+.+
T Consensus 46 eeal~~~~~~l~~nP--~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 46 ESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHCc--hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcc
Confidence 566777777777766 466667666666666665 777777777777653 556667777777777777
Q ss_pred --CHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------
Q 009977 289 --KVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEG-KLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRA-------- 357 (521)
Q Consensus 289 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 357 (521)
+++++++.++++.+.. +-+..+|+.-..++.+.| .++++++.+.++.+..+. +..+|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 5677777777777765 456666766666666777 677777777777664332 566776666665542
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 009977 358 ------GRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIE 396 (521)
Q Consensus 358 ------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 396 (521)
+.++++++.++++....+. |..+|..+...+.+.++.+
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred cccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 4578888888888877654 6777877777777666633
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.21 E-value=2.7e-06 Score=77.77 Aligned_cols=152 Identities=10% Similarity=-0.028 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 009977 344 TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNF 423 (521)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (521)
...+..+...+.+.|++++|+..|++..... |+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 5667777888888999999999999988763 33321 223334444433221 1367788888
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH-HccCcH
Q 009977 424 SCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPE-SDSWALLVELI-CRGRKL 500 (521)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~-~~~g~~ 500 (521)
|.+.|++++|+..++++++. .| +...+..+..+|...|++++|...|+++++. .|+ ...+..+.... ...+..
T Consensus 240 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999864 45 7788888999999999999999999988765 344 34555555552 346777
Q ss_pred HHHHHHHHHHHHcCccCc
Q 009977 501 LFAFELLDELVIKESGTI 518 (521)
Q Consensus 501 ~~A~~~~~~m~~~~~~~~ 518 (521)
+++...|.+|....|.+.
T Consensus 316 ~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 316 QKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHHhhCCCCCCC
Confidence 888999999998877653
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.21 E-value=2.8e-05 Score=60.77 Aligned_cols=97 Identities=10% Similarity=0.055 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----CH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhc------
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYP-----NL-----ITYSTLIDGLCKNGRFREAIELFEEMVSK------ 267 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 267 (521)
.+......+.+.|++++|+..|++..+..+..| +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 445556666677777777777777666554311 22 26666777777777777777777666654
Q ss_pred -CCCCCCHHHH----HHHHHHHHhCCCHHHHHHHHHHHHH
Q 009977 268 -DQILPDALTY----NVLIDGFCRGGKVDRAKKIMEFMKN 302 (521)
Q Consensus 268 -~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 302 (521)
+ +.+...| .....++...|++++|+..|++.++
T Consensus 93 ~~--pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LN--QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TT--STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC--CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2 2234455 6666666666666666666666654
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.17 E-value=7.2e-06 Score=74.92 Aligned_cols=146 Identities=11% Similarity=0.037 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
.+..+...+.+.|++++|...|++.....+ +... +...|+.+++...+. ...|..+..+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p---~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMG---DDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSC---HHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhc---cchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 455566666777777777777777665432 2110 111122222221110 0134445555
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH-HHhcCCHH
Q 009977 284 FCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD-TIGYTTLINC-FCRAGRVD 361 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~-~~~~~~~~ 361 (521)
|.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|...|+++.+. .|+ ...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555443 334445555555555555555555555554432 222 2223333222 12234444
Q ss_pred HHHHHHHHHHHc
Q 009977 362 EALELLKEMKER 373 (521)
Q Consensus 362 ~A~~~~~~~~~~ 373 (521)
++..+|..+...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 555555555443
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.07 E-value=3.1e-05 Score=73.86 Aligned_cols=125 Identities=14% Similarity=-0.052 Sum_probs=65.3
Q ss_pred HHhcCCHHHHHHHHHHHHHC-----CCc-c-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----C-CCC-CHHHHHH
Q 009977 389 LCREGKIEEALGMLEKLWYD-----GIY-L-NKASYRIVLNFSCQKGELEKAIELLRLMLCR-----G-FLP-HYATSNE 454 (521)
Q Consensus 389 ~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~p-~~~~~~~ 454 (521)
+...|++++|..++++.++. |.. | ...+++.|..+|...|++++|..+++++++- | -.| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33455566665555554432 110 1 1234555566666666666666666555421 1 111 2334556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CCH-HHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 009977 455 LLVRLCKAGMAEDAAIALFGLVE-----MGFK-PES-DSWALLVELICRGRKLLFAFELLDELVIK 513 (521)
Q Consensus 455 l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 513 (521)
|...|...|++++|..+++++++ .|.. |+. .+...+..++...|.+++|..+|.++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666553 2311 111 33445555666666777777777666653
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.03 E-value=1.9e-05 Score=59.13 Aligned_cols=79 Identities=14% Similarity=-0.011 Sum_probs=64.2
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhh
Q 009977 77 CALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKI 156 (521)
Q Consensus 77 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 156 (521)
+|++.|++++... +.+...+..+..++...|++++|...+++..+.+ +.+...+..+..+|...|++++|+..|++.
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5777888876543 4567888888889999999999999999988775 556778888888899999999999988887
Q ss_pred cc
Q 009977 157 HP 158 (521)
Q Consensus 157 ~~ 158 (521)
..
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.03 E-value=5.9e-05 Score=71.95 Aligned_cols=99 Identities=7% Similarity=-0.070 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCC
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKK-----SQMSYPN-LITYSTLIDGLCKNGRFREAIELFEEMVSK-----DQILP 272 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~ 272 (521)
+++.|+.+|...|++++|..++++..+ .|+..|+ ..+++.|+..|...|++++|+.++++.++. +...|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 555566666666666666655555432 2333333 234555666666666666666666555431 11122
Q ss_pred C-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009977 273 D-ALTYNVLIDGFCRGGKVDRAKKIMEFMKN 302 (521)
Q Consensus 273 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 302 (521)
+ ..+.+.+..++...+.+++|+.+|..+.+
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22344455555566666666666666654
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.01 E-value=0.00016 Score=56.06 Aligned_cols=7 Identities=0% Similarity=0.235 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 009977 257 AIELFEE 263 (521)
Q Consensus 257 A~~~~~~ 263 (521)
|+++|++
T Consensus 44 A~~~~~~ 50 (138)
T 1klx_A 44 LFQYLSK 50 (138)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.00 E-value=4.3e-05 Score=57.10 Aligned_cols=79 Identities=14% Similarity=0.039 Sum_probs=53.4
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009977 185 AQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEM 264 (521)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 264 (521)
|...++.+++ ..+.+...+..+...|...|++++|...|++..+..+ .+...|..++.++...|++++|...|++.
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555543 1233566777777777777777777777777777665 45667777777777777777777777777
Q ss_pred Hhc
Q 009977 265 VSK 267 (521)
Q Consensus 265 ~~~ 267 (521)
...
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.97 E-value=2.6e-05 Score=56.65 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=47.9
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 200 PNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 200 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
.+...+..+...|...|++++|+..|++..+..+ .+...|..+..+|...|++++|++.|++.++.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDP--DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3566777777777777777777777777777665 35567777777777777777777777776654
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.96 E-value=0.00038 Score=53.85 Aligned_cols=88 Identities=11% Similarity=-0.060 Sum_probs=36.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 009977 315 LMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCR----AGRVDEALELLKEMKERGCKADIVTFNIILGGLC 390 (521)
Q Consensus 315 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (521)
|...|...+.+++|.+.|++..+. -+...+..+...|.. .+++++|+..|++..+.| +...+..+...|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL---NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 333333334444444444444432 133344444444443 344444444444444432 2333344444444
Q ss_pred h----cCCHHHHHHHHHHHHHC
Q 009977 391 R----EGKIEEALGMLEKLWYD 408 (521)
Q Consensus 391 ~----~g~~~~a~~~~~~~~~~ 408 (521)
. .++.++|..+|++..+.
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHC
Confidence 3 34444444444444443
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.95 E-value=0.00012 Score=51.76 Aligned_cols=80 Identities=20% Similarity=0.199 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLI 281 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 281 (521)
...+..+...+...|++++|...|++..+..+ .+...+..+..++...|++++|+..|++..... +.+...+..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 34555556666666666666666666655544 345556666666666666666666666665542 33444444444
Q ss_pred HHHH
Q 009977 282 DGFC 285 (521)
Q Consensus 282 ~~~~ 285 (521)
.++.
T Consensus 85 ~~~~ 88 (91)
T 1na3_A 85 NAKQ 88 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.94 E-value=4.6e-05 Score=56.36 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
...+..+...+...|++++|.+.|++..+..+ .+...|..++.++...|++++|++.+++.+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP--QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34555566666666666666666666665554 35556666666666666666666666666554
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.86 E-value=5.1e-05 Score=59.16 Aligned_cols=85 Identities=16% Similarity=0.074 Sum_probs=47.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 009977 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRF----------REAIELFEEMVSKDQILPDALTYNVLIDGF 284 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 284 (521)
.+.+++|.+.+++..+..+ .+...|..+..++...+++ ++|+..|++.++.+ +.+..+|..+..+|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P--~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNP--LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHH
Confidence 3445555556665555554 3555555555555555443 36666666666553 33455566666666
Q ss_pred HhCC-----------CHHHHHHHHHHHHHc
Q 009977 285 CRGG-----------KVDRAKKIMEFMKNN 303 (521)
Q Consensus 285 ~~~~-----------~~~~a~~~~~~~~~~ 303 (521)
...| ++++|++.|++.++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5543 566666666666654
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.85 E-value=0.0002 Score=50.49 Aligned_cols=82 Identities=21% Similarity=0.224 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHH
Q 009977 237 NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLM 316 (521)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 316 (521)
+...+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 34566667777777777777777777776653 4456666777777777777777777777776654 33445555555
Q ss_pred HHHHh
Q 009977 317 NGFCK 321 (521)
Q Consensus 317 ~~~~~ 321 (521)
.++..
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.84 E-value=5.2e-05 Score=54.97 Aligned_cols=66 Identities=8% Similarity=0.076 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhcc
Q 009977 92 NHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHP 158 (521)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 158 (521)
+.+...+..+..++...|++++|...|++..+.+ +.+..++..+..+|...|++++|++.|++...
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3456677777888888888888888888887765 44566777788888888888888888777653
No 207
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.84 E-value=6.1e-05 Score=55.68 Aligned_cols=66 Identities=14% Similarity=0.232 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009977 237 NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (521)
+...|..++..+...|++++|++.|++.+... +.+...+..+..++...|++++|++.+++.++..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 45566777777777777777777777777653 4456677777777777777777777777777653
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.79 E-value=4.8e-05 Score=59.30 Aligned_cols=91 Identities=11% Similarity=-0.011 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcC
Q 009977 358 GRVDEALELLKEMKERGCKADIVTFNIILGGLCREGK----------IEEALGMLEKLWYDGIYLNKASYRIVLNFSCQK 427 (521)
Q Consensus 358 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (521)
+.+++|+..++...+..+. +...|..+..++...++ +++|+..|++.++.++. +...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHh
Confidence 3444555555555444332 44444444444444433 23455555554444322 334444444444433
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCCCHHHH
Q 009977 428 -----------GELEKAIELLRLMLCRGFLPHYATS 452 (521)
Q Consensus 428 -----------g~~~~a~~~~~~~~~~~~~p~~~~~ 452 (521)
|++++|++.|+++++ +.|+...|
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y 127 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHY 127 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHH
Confidence 355555555555553 34544333
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.51 E-value=0.0019 Score=58.02 Aligned_cols=143 Identities=13% Similarity=0.009 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHH--HhcC---CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh---cC--CHHHH---HHHHHHHHH
Q 009977 341 KPDTIGYTTLINCF--CRAG---RVDEALELLKEMKERGCKADIVTFNIILGGLCR---EG--KIEEA---LGMLEKLWY 407 (521)
Q Consensus 341 ~~~~~~~~~l~~~~--~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g--~~~~a---~~~~~~~~~ 407 (521)
..+...|...+.+. ...+ +..+|..+|++..+..+. ....|..+..+|.. .+ ..... ...++....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 34566677666653 3333 346788888888877543 34455544444431 01 11111 111111111
Q ss_pred C-CCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 009977 408 D-GIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDS 486 (521)
Q Consensus 408 ~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 486 (521)
. ....++.+|..+...+...|++++|...+++++.. .|+...|..+...+.-.|++++|...++++... .|...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 1 11335556666655555567777777777777754 366666666666777777777777777777665 466655
Q ss_pred HH
Q 009977 487 WA 488 (521)
Q Consensus 487 ~~ 488 (521)
|.
T Consensus 346 ~~ 347 (372)
T 3ly7_A 346 LY 347 (372)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.41 E-value=0.00046 Score=49.59 Aligned_cols=86 Identities=15% Similarity=0.133 Sum_probs=55.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcc
Q 009977 421 LNFSCQKGELEKAIELLRLMLCRGFLP-HYA-TSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES-DSWALLVELICRG 497 (521)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 497 (521)
...+...|++++|+..++++++. .| +.. .+..+..++...|++++|...|+++++.. |+. ..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~-------- 74 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN--PDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHH--------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHH--------
Confidence 44556677777777777777753 34 455 66777777777788888888877777653 332 22211
Q ss_pred CcHHHHHHHHHHHHHcCccCc
Q 009977 498 RKLLFAFELLDELVIKESGTI 518 (521)
Q Consensus 498 g~~~~A~~~~~~m~~~~~~~~ 518 (521)
+.+.++...+++....+|++.
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 566677777777666655544
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.36 E-value=0.0046 Score=43.61 Aligned_cols=67 Identities=12% Similarity=0.062 Sum_probs=41.4
Q ss_pred CcHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 009977 200 PNTCIFNILIKHHCKRGT---LESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKD 268 (521)
Q Consensus 200 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 268 (521)
.++..+..+..++...++ .++|..++++..+..+ .++.....++..+.+.|++++|+..|+++++..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp--~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP--YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 445555555555543333 4666666666666665 466666666666666777777777777666553
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.34 E-value=0.015 Score=52.32 Aligned_cols=64 Identities=14% Similarity=0.060 Sum_probs=30.7
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009977 308 NVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKER 373 (521)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 373 (521)
+..++..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34444444444444455555555555554432 44444444444445555555555555555444
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.32 E-value=0.00085 Score=51.67 Aligned_cols=82 Identities=17% Similarity=0.063 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 009977 395 IEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKG---ELEKAIELLRLMLCRGFLP--HYATSNELLVRLCKAGMAEDAA 469 (521)
Q Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~ 469 (521)
...+.+-|.+....+. ++..+...+..++++.+ +.++++.++++..+.. .| +...+..+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555555555443 46666666666666666 4556777776666542 23 3445555666666777777777
Q ss_pred HHHHHHHHC
Q 009977 470 IALFGLVEM 478 (521)
Q Consensus 470 ~~~~~~~~~ 478 (521)
++++.+++.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777766665
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.31 E-value=0.0013 Score=61.53 Aligned_cols=61 Identities=10% Similarity=-0.081 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHHHHHccCcHHHHHHHHHHHH
Q 009977 451 TSNELLVRLCKAGMAEDAAIALFGLVE-----MGF-KPES-DSWALLVELICRGRKLLFAFELLDELV 511 (521)
Q Consensus 451 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 511 (521)
+++.|..+|...|++++|..+++++++ .|. .|+. .+++.|+..|..+|++++|..++++++
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 344444444444444444444444432 110 1111 334444444555555555555544443
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.21 E-value=0.0016 Score=61.04 Aligned_cols=88 Identities=7% Similarity=-0.061 Sum_probs=53.3
Q ss_pred cCCHHHHHHHHHHhhhc--CCCC---Cc-HHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCCH-HHHHHHHH
Q 009977 179 SNQVDLAQNFLKYSNQH--LRLK---PN-TCIFNILIKHHCKRGTLESAFEVLKEMKK-----SQMSYPNL-ITYSTLID 246 (521)
Q Consensus 179 ~~~~~~a~~~~~~~~~~--~~~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~-~~~~~l~~ 246 (521)
.|++++|+.++++.++. .-+. |+ ..+++.|+.+|...|++++|..++++... .|+..|++ .+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777766531 1111 22 34677777777777777777777776543 23333332 44666677
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 009977 247 GLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~~ 266 (521)
.|...|++++|+.+|+++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777777777776666644
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.19 E-value=0.0035 Score=58.81 Aligned_cols=92 Identities=15% Similarity=0.017 Sum_probs=52.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC---Ccc----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----C-CCC-CHHH
Q 009977 386 LGGLCREGKIEEALGMLEKLWYDG---IYL----NKASYRIVLNFSCQKGELEKAIELLRLMLCR-----G-FLP-HYAT 451 (521)
Q Consensus 386 ~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~p-~~~~ 451 (521)
+..+...|++++|..++++.++.. ..| ...+++.++.+|...|++++|+.+++++++- | ..| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556667777777776666431 111 1234566666666667777777766666531 1 112 2334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 452 SNELLVRLCKAGMAEDAAIALFGLVE 477 (521)
Q Consensus 452 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 477 (521)
++.|...|...|++++|..+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 55666666666677666666666665
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.17 E-value=0.0068 Score=42.72 Aligned_cols=67 Identities=10% Similarity=0.058 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---chHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccc
Q 009977 92 NHNNATYATILDKLARYKK---FEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPI 159 (521)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 159 (521)
+.|...+..+..++...++ .++|..++++.++.+ |.+..++..+...+.+.|++++|++.|+++...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567777777777765544 688888888888876 567778888888888888888888888888643
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.15 E-value=0.02 Score=59.14 Aligned_cols=154 Identities=16% Similarity=0.182 Sum_probs=88.9
Q ss_pred HHHHccCcHHHHHH-HHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcC
Q 009977 138 KHFSNCSLHERVLE-MFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRG 216 (521)
Q Consensus 138 ~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 216 (521)
......+++++|.+ ++..+. +...+..++..+.+.|..++|.++.+.- . .-.......|
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~-------~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~-----~~f~~~l~~~ 666 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE-------GKDSLTKIARFLEGQEYYEEALNISPDQ--------D-----QKFELALKVG 666 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC-------CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------H-----HHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhcCC-------chHHHHHHHHHHHhCCChHHheecCCCc--------c-----hheehhhhcC
Confidence 33445677777766 442221 1223366666777777777777654211 1 1123455678
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 009977 217 TLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKI 296 (521)
Q Consensus 217 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 296 (521)
+++.|.++.+.+ .+...|..+...+.+.|+++.|++.|.++.. |..+...+...|+.+...++
T Consensus 667 ~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 667 QLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp CHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHH
Confidence 888887775432 4667788888888888888888888887632 33444455556666665555
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 009977 297 MEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDE 334 (521)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 334 (521)
.+.....| -++....+|.+.|++++|++++.+
T Consensus 730 ~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 730 AKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 55554443 223333344455555555554443
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.14 E-value=0.0036 Score=44.77 Aligned_cols=58 Identities=19% Similarity=0.346 Sum_probs=37.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 009977 209 IKHHCKRGTLESAFEVLKEMKKSQMSYPNLI-TYSTLIDGLCKNGRFREAIELFEEMVSKD 268 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 268 (521)
+..+.+.|++++|...|++..+..+ .+.. .|..++.++...|++++|++.|++.++..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEP--VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS--STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4455666667777777766666554 3555 66666666667777777777777666653
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.97 E-value=0.0049 Score=57.81 Aligned_cols=94 Identities=13% Similarity=0.012 Sum_probs=69.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcC--CCCCc----HHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCC-HHH
Q 009977 173 LNLLIESNQVDLAQNFLKYSNQHL--RLKPN----TCIFNILIKHHCKRGTLESAFEVLKEMKK-----SQMSYPN-LIT 240 (521)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~-~~~ 240 (521)
+..+...|++++|+.+++++++.. -+.|+ ..+++.++.+|...|++++|+.+++++.. .|+..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556788888888888876421 12222 45788899999999999999998887653 3444444 355
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 241 YSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 241 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
++.|+..|...|++++|+.+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 78899999999999999998888765
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.11 Score=41.11 Aligned_cols=102 Identities=18% Similarity=0.284 Sum_probs=67.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCH
Q 009977 211 HHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKV 290 (521)
Q Consensus 211 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 290 (521)
...+.|+++.|.++.+++ .+...|..|.......|+++-|++.|.+... +..+.-.|.-.|+.
T Consensus 14 LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCH
T ss_pred HHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCH
Confidence 445677888887776654 3566788888888888888888888776532 24444455666777
Q ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 291 DRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEM 335 (521)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 335 (521)
++..++-+.....| -++.....+...|+++++.++|.+.
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 76666666555554 3444455566677777777777553
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.77 E-value=0.019 Score=59.30 Aligned_cols=97 Identities=14% Similarity=0.172 Sum_probs=56.3
Q ss_pred hcCCchHHHH-HHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHH
Q 009977 107 RYKKFEAVDA-VLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLA 185 (521)
Q Consensus 107 ~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 185 (521)
..+++++|.+ ++..+. +...+..++..+.+.|.+++|++..+.- ..-.......|++++|
T Consensus 611 ~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------------~~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQ-------------DQKFELALKVGQLTLA 671 (814)
T ss_dssp HTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCH-------------HHHHHHHHHHTCHHHH
T ss_pred HhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCc-------------chheehhhhcCCHHHH
Confidence 4566666655 332211 0122355666666777777776654211 0112334556777777
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009977 186 QNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMK 229 (521)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 229 (521)
.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.
T Consensus 672 ~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 672 RDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 7765432 355677777777778888877777777653
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.77 E-value=0.13 Score=44.25 Aligned_cols=65 Identities=11% Similarity=0.097 Sum_probs=29.5
Q ss_pred HHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCC
Q 009977 346 GYTTLINCFCR-----AGRVDEALELLKEMKERGCKADIVTFNIILGGLCRE-GKIEEALGMLEKLWYDGI 410 (521)
Q Consensus 346 ~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~ 410 (521)
.|..+...|.+ -|+.++|.+.|++.++.++.-+..++......++.. |+.+++.+.+++.+...+
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 44444444444 245555555555554443221233444444444442 445555555555544433
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.72 E-value=4.5e-07 Score=82.61 Aligned_cols=165 Identities=11% Similarity=0.080 Sum_probs=103.8
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHH
Q 009977 59 FISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMK 138 (521)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (521)
...|..+..+....+...+|++-|-++ .|+..|..++.+..+.|.+++-...+....+..- ++..=..|+-
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 457888888888888888888776443 2555677888888889999988888877665432 2233347888
Q ss_pred HHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCCh
Q 009977 139 HFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTL 218 (521)
Q Consensus 139 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 218 (521)
+|++.++..+..+. -..|+..-...+.+-|...|.++.|.-+|..+. -|..|...+.+.|++
T Consensus 125 ayAk~~rL~elEef--------l~~~N~A~iq~VGDrcf~e~lYeAAKilys~is----------N~akLAstLV~L~~y 186 (624)
T 3lvg_A 125 ALAKTNRLAELEEF--------INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEY 186 (624)
T ss_dssp HHHTSCSSSTTTST--------TSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC----------CCTTTSSSSSSCSGG
T ss_pred HHHhhCcHHHHHHH--------HcCCCcccHHHHHHHHHHccCHHHHHHHHHhCc----------cHHHHHHHHHHHHHH
Confidence 88888875443322 125666667778888888888888877775442 123344445555555
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009977 219 ESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREA 257 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 257 (521)
..|.+.-++ ..++.||..+-.+|...+++.-|
T Consensus 187 q~AVdaArK-------Ans~ktWKeV~~ACvd~~EfrLA 218 (624)
T 3lvg_A 187 QAAVDGARK-------ANSTRTWKEVCFACVDGKEFRLA 218 (624)
T ss_dssp GSSTTTTTT-------CCSSCSHHHHTHHHHHSCTTTTT
T ss_pred HHHHHHHHh-------cCChhHHHHHHHHHhCchHHHHH
Confidence 555432211 13444555555555555554443
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.71 E-value=0.11 Score=44.71 Aligned_cols=88 Identities=15% Similarity=0.209 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc-CCHHH
Q 009977 254 FREAIELFEEMVSKDQILPDALTYNVLIDGFCR-----GGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKE-GKLQE 327 (521)
Q Consensus 254 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 327 (521)
...|...+++.++.++...+...|..+...|.+ .|+.++|.+.|++.++.+...+..++......++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 456777777777664222235567777777777 378888888888888765222366777777777774 77888
Q ss_pred HHHHHHHHHhCCCC
Q 009977 328 AKEVFDEMKNFLLK 341 (521)
Q Consensus 328 A~~~~~~~~~~~~~ 341 (521)
|.+.+++.......
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 88888887775544
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.66 E-value=0.0051 Score=45.50 Aligned_cols=81 Identities=16% Similarity=0.005 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 009977 396 EEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEK---AIELLRLMLCRGFLP--HYATSNELLVRLCKAGMAEDAAI 470 (521)
Q Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~ 470 (521)
..+.+-+......|. ++..+-..+..++.+..+... ++.+++.+.+.+ .| .......|.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 333444443333322 344444445555555544333 555555554432 12 23333444445555555555555
Q ss_pred HHHHHHHC
Q 009977 471 ALFGLVEM 478 (521)
Q Consensus 471 ~~~~~~~~ 478 (521)
.++.+++.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555544
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.61 E-value=0.031 Score=43.03 Aligned_cols=85 Identities=20% Similarity=0.108 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC-CccCHHHHHHHHHHHHcCCCHHHHHH
Q 009977 360 VDEALELLKEMKERGCKADIVTFNIILGGLCREG---KIEEALGMLEKLWYDG-IYLNKASYRIVLNFSCQKGELEKAIE 435 (521)
Q Consensus 360 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (521)
...+.+-|.+....+. ++..+...+..++++.+ +.++++.+|+.+.+.+ +.-+...+-.+.-+|.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3444455555544443 35555555666666655 4456666666666543 11123334444455566666666666
Q ss_pred HHHHHHHCCCCC
Q 009977 436 LLRLMLCRGFLP 447 (521)
Q Consensus 436 ~~~~~~~~~~~p 447 (521)
.++.+++ +.|
T Consensus 93 y~~~lL~--ieP 102 (152)
T 1pc2_A 93 YVRGLLQ--TEP 102 (152)
T ss_dssp HHHHHHH--HCT
T ss_pred HHHHHHh--cCC
Confidence 6666663 355
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.60 E-value=0.0093 Score=43.14 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=56.7
Q ss_pred cCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009977 412 LNKASYRIVLNFSCQKGELEKAIELLRLMLCRG------FLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES 484 (521)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 484 (521)
.+..-+..+...+...|+++.|...|+.+++.- -.+...++..+..++.+.|+++.|...++++.+. .|+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~ 79 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEH 79 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence 355667788888999999999999999888531 1235678888999999999999999999999876 4554
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.60 E-value=0.034 Score=40.10 Aligned_cols=66 Identities=9% Similarity=0.004 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQ-----MSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
...+..++..+.+.|+++.|...|+...+.. ........+..+..++.+.|++++|+.+++++...
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3444555555666666666666655544321 00134455555666666666666666666666544
No 230
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.51 E-value=0.65 Score=47.42 Aligned_cols=125 Identities=14% Similarity=0.123 Sum_probs=52.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH--HHHHHHHH
Q 009977 208 LIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTY--NVLIDGFC 285 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~l~~~~~ 285 (521)
|...+.-.|+-+....++..+.+... .+..-...+.-++...|+.+.+..+.+.+.... .|....- .++.-+|+
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~~~--e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~--dp~vRygaa~alglAya 571 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQETQH--GNITRGLAVGLALINYGRQELADDLITKMLASD--ESLLRYGGAFTIALAYA 571 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHCSC--HHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS--CHHHHHHHHHHHHHHTT
T ss_pred HhhhhcccCCHHHHHHHHHHHhccCc--HHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhc
Confidence 33344455555555555555443211 122222333334445566666665555554321 1111111 12233445
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 286 RGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 286 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
..|+.....+++..+.... ..++.....+.-++...|+.+.+..++..+.+
T Consensus 572 GTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~ 622 (963)
T 4ady_A 572 GTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK 622 (963)
T ss_dssp TSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG
T ss_pred CCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence 5556555555665555431 11222222222333334444444555544433
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.16 Score=40.21 Aligned_cols=100 Identities=11% Similarity=0.117 Sum_probs=47.4
Q ss_pred HHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChH
Q 009977 140 FSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLE 219 (521)
Q Consensus 140 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 219 (521)
..+.|+++.|.++.+.+. +...|..+.......|+++-|...|.... -+..+.-.|.-.|+.+
T Consensus 15 AL~lg~l~~A~e~a~~l~-------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~----------D~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN-------DSITWERLIQEALAQGNASLAEMIYQTQH----------SFDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHTT----------CHHHHHHHHHHHTCHH
T ss_pred HHhcCCHHHHHHHHHHhC-------CHHHHHHHHHHHHHcCChHHHHHHHHHhC----------CHHHHHHHHHHhCCHH
Confidence 344555555555544431 23445555555555555555555555442 1233333444455555
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009977 220 SAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEE 263 (521)
Q Consensus 220 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 263 (521)
.-.++-+.....|- ++.....+...|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g~-------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRED-------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcc-------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444443333321 33333444455666666655544
No 232
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.08 E-value=1.5 Score=44.81 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=21.6
Q ss_pred CChHHHHHHHHhcCChHHHHHHHHHhh
Q 009977 60 ISHGAAISLIKCEKEPQCALEIFNTVS 86 (521)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~A~~~~~~~~ 86 (521)
..|..++....+.++.+.+.++|+.+.
T Consensus 231 ~dy~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 231 CDYLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356777788888888888999998874
No 233
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.95 E-value=1.1 Score=42.08 Aligned_cols=193 Identities=13% Similarity=0.169 Sum_probs=111.5
Q ss_pred CChHHHHHHHHHhhh----CCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHH----HccC
Q 009977 73 KEPQCALEIFNTVSE----QKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHF----SNCS 144 (521)
Q Consensus 73 ~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g 144 (521)
++++.|++-+-.+.+ ..+..........++..|...|+++...+.+..+...... .......+++.+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 678888777654432 2234445677888999999999999887777666544222 222333333322 2222
Q ss_pred --cHHHHHHHHHhhccccCCCC-----CHhHHHHHHHHHHhcCCHHHHHHHHHHhhhc-CCCCCc---HHHHHHHHHHHH
Q 009977 145 --LHERVLEMFHKIHPITREKP-----SLKAISTCLNLLIESNQVDLAQNFLKYSNQH-LRLKPN---TCIFNILIKHHC 213 (521)
Q Consensus 145 --~~~~a~~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~---~~~~~~l~~~~~ 213 (521)
+.+.-+.+.+.+........ .......+...+...|++.+|..++..+... .+.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 22233334443322111111 1122345677788888888888888877532 122121 346777778888
Q ss_pred hcCChHHHHHHHHHHHh---CCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 214 KRGTLESAFEVLKEMKK---SQMSYPN--LITYSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 214 ~~g~~~~A~~~~~~~~~---~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
..+++.+|..++.++.. .....|+ ...+...+..+...++|.+|.+.|.++..
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 88888888888877632 1111122 23455666677777888888777776654
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.86 E-value=0.15 Score=38.35 Aligned_cols=67 Identities=12% Similarity=-0.129 Sum_probs=28.8
Q ss_pred cCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 412 LNKASYRIVLNFSCQKGE---LEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
|+..+--.+..++.+..+ ..+++.+++.+.+.+..-.......|.-++.+.|++++|.++.+.+++.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 344444444444444432 2344445554443221112333333444455555555555555555544
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.79 E-value=0.19 Score=38.19 Aligned_cols=53 Identities=11% Similarity=0.139 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 009977 288 GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK 341 (521)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 341 (521)
++.++|.++|+.+++.+ +.-...|....+.-.+.|++..|.+++......+.+
T Consensus 74 ~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 55666666666665432 111444444455555566666666666665554443
No 236
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.73 E-value=0.082 Score=39.22 Aligned_cols=69 Identities=12% Similarity=-0.147 Sum_probs=35.8
Q ss_pred CccCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 410 IYLNKASYRIVLNFSCQKGE---LEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
..|+..+--.+..++.+..+ ..+++.+++++.+.+..-....+..+.-++.+.|++++|.++.+.+++.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34455554445555555443 3355566666554331113444445555666666666666666666554
No 237
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.66 E-value=0.018 Score=53.21 Aligned_cols=378 Identities=13% Similarity=0.110 Sum_probs=213.7
Q ss_pred CCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHH
Q 009977 57 SRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNL 136 (521)
Q Consensus 57 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (521)
.+...|..+|....+.|.+++-+.++.-+ +.. ..++..=+.|+-+|++.++..+.++.+. .|+..-...+
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~Ma-Rk~--~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~V 150 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMA-RKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQV 150 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTT-STT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHH-HHH--hcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHH
Confidence 56778999999999999999999998765 433 3455556689999999999876444332 2333344566
Q ss_pred HHHHHccCcHHHHHHHHHhhccc-------------------cCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 009977 137 MKHFSNCSLHERVLEMFHKIHPI-------------------TREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLR 197 (521)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 197 (521)
..-|...|.++.|.-+|..+... .....+..+|..+-.+|...+.+..|...--.++-.
T Consensus 151 GDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-- 228 (624)
T 3lvg_A 151 GDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-- 228 (624)
T ss_dssp HHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC--
T ss_pred HHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc--
Confidence 77777777777776666654311 111445678999999999999888776554444322
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-----
Q 009977 198 LKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILP----- 272 (521)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----- 272 (521)
+| -...++..|-..|.+++-+.+++... |........|+.|+-.|++- ++++..+.++..-.+-+++-
T Consensus 229 --ad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvirac 301 (624)
T 3lvg_A 229 --AD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAA 301 (624)
T ss_dssp --SS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHH
T ss_pred --HH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHH
Confidence 11 22345677888999999999998776 34346778888888777765 45666665554433322221
Q ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHH-------------HHHHHcCCCCCcchHHHHHHHHHh---------------cC
Q 009977 273 -DALTYNVLIDGFCRGGKVDRAKKIM-------------EFMKNNGCNPNVFNYTTLMNGFCK---------------EG 323 (521)
Q Consensus 273 -~~~~~~~l~~~~~~~~~~~~a~~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~---------------~~ 323 (521)
....|.-++-.|.+-.++|.|.... .+++.+ ..|...|...+..|.+ .=
T Consensus 302 E~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prl 379 (624)
T 3lvg_A 302 EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRL 379 (624)
T ss_dssp TTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTC
T ss_pred HHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccC
Confidence 1234666777777777777654321 111111 2344445444444443 33
Q ss_pred CHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHhcCCHHHHHH------------HHHHHHHcCCCCcHhH
Q 009977 324 KLQEAKEVFDEMKNF----------LLKPDTIGYTTLINCFCRAGRVDEALE------------LLKEMKERGCKADIVT 381 (521)
Q Consensus 324 ~~~~A~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~A~~------------~~~~~~~~~~~~~~~~ 381 (521)
|...+.++|++.... .-..+...-.++-..|....|++.-.. +-.++.++ +..-
T Consensus 380 Dh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH----eL~e 455 (624)
T 3lvg_A 380 DHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH----ELIE 455 (624)
T ss_dssp CSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC----SSHH
T ss_pred ChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC----chHH
Confidence 444444444432110 001123333445556666666654322 22222222 1122
Q ss_pred H-HHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009977 382 F-NIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLC 460 (521)
Q Consensus 382 ~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 460 (521)
| ......|.++++++++..+.++ ...|.-.|......|+.+-|.++++-.++.| +..+|.+.+..|.
T Consensus 456 FRrIAA~LYkkn~rw~qsi~l~Kk---------DklykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCY 523 (624)
T 3lvg_A 456 FRRIAAYLFKGNNRWKQSVELCKK---------DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCY 523 (624)
T ss_dssp HHHHHHHHHHTTCHHHHHSSCSST---------TCCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcccHHHHHHHHHh---------cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHh
Confidence 2 2233445566667666544321 1122223344456677777777777666543 3345555555555
Q ss_pred hcCCHHHHHHH
Q 009977 461 KAGMAEDAAIA 471 (521)
Q Consensus 461 ~~g~~~~a~~~ 471 (521)
..=+++-++++
T Consensus 524 dLlrpDvVlEl 534 (624)
T 3lvg_A 524 DLLRPDVVLET 534 (624)
T ss_dssp SSSSCHHHHHH
T ss_pred hccChHHHHHH
Confidence 55555555443
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.55 E-value=1.4 Score=41.43 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHhhhc----CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 180 NQVDLAQNFLKYSNQH----LRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKK 230 (521)
Q Consensus 180 ~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 230 (521)
|+++.|++.+..+.+. ............++..|...|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5666666555444321 12223345566666667677777666665555443
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.30 E-value=0.61 Score=34.64 Aligned_cols=60 Identities=17% Similarity=-0.001 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 009977 453 NELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIK 513 (521)
Q Consensus 453 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 513 (521)
+..++.+...|+-++-.+++..++.. -+|+++....+..+|.+.|+..+|.+++.++-++
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33444445555555555554443221 1344455555555555555555555555555444
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.24 E-value=0.5 Score=35.93 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 009977 323 GKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKA 377 (521)
Q Consensus 323 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 377 (521)
++.++|.++|+.+....-.- ...|......-.+.|+...|.+++...+..+.+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56666666666665432122 5555555555566777777777777766666553
No 241
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.06 E-value=2 Score=39.26 Aligned_cols=169 Identities=7% Similarity=0.010 Sum_probs=79.9
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHh---HHHHHHHHHHhcC-CHHHHHH----HHHHhhhcCCCCCcHH
Q 009977 132 IFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLK---AISTCLNLLIESN-QVDLAQN----FLKYSNQHLRLKPNTC 203 (521)
Q Consensus 132 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~-~~~~a~~----~~~~~~~~~~~~~~~~ 203 (521)
+...+...|.+.|+.++..+++.........-+... ....+++.+.... ..+.-.+ .++....+...-....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666543322222222 2334444444322 2222222 2222221100000001
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCCHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYP----NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQ-ILPDALTYN 278 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ 278 (521)
.=..++..|...|++.+|.+++.++.+.-.... -...+..-+..|...+++.++...+........ +.+++....
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 223567777778888888777777655211101 123344555667777777777777766643211 223332221
Q ss_pred HH----HHHHH-hCCCHHHHHHHHHHH
Q 009977 279 VL----IDGFC-RGGKVDRAKKIMEFM 300 (521)
Q Consensus 279 ~l----~~~~~-~~~~~~~a~~~~~~~ 300 (521)
.+ +..+. ..+++..|...|-+.
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 11 12234 566777776666544
No 242
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.89 E-value=0.83 Score=33.97 Aligned_cols=140 Identities=13% Similarity=0.106 Sum_probs=95.5
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHH
Q 009977 69 IKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHER 148 (521)
Q Consensus 69 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 148 (521)
+.-.|..++..++..+.... .+..-||.++-.....-+-+-..++++.+-+. .| ...+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s----sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC----CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHH
Confidence 34467888888888777543 25556677776666555555555555554321 22 134666667
Q ss_pred HHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009977 149 VLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEM 228 (521)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 228 (521)
.+..+-.+ ..+...+...+..+...|+-+.-.+++..+.. ..+|++.....+..+|.+.|+..+|.+++.+.
T Consensus 80 Vi~C~~~~------n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 80 VVECGVIN------NTLNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp HHHHHHHT------TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHh------cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 77666555 33455667778888888888888888887543 45677888888888888888888888888888
Q ss_pred HhCCC
Q 009977 229 KKSQM 233 (521)
Q Consensus 229 ~~~~~ 233 (521)
.+.|.
T Consensus 152 C~kG~ 156 (172)
T 1wy6_A 152 CKKGE 156 (172)
T ss_dssp HHTTC
T ss_pred HHhhh
Confidence 88776
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.86 E-value=0.17 Score=50.61 Aligned_cols=52 Identities=17% Similarity=0.056 Sum_probs=29.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 009977 458 RLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDEL 510 (521)
Q Consensus 458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 510 (521)
.|...|+++.|+.+-++..... +.+..+|..|+++|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3444566666666666555432 233456666666666666666666666555
No 244
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.74 E-value=0.33 Score=35.86 Aligned_cols=70 Identities=19% Similarity=0.117 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccC
Q 009977 447 PHYATSNELLVRLCKAGMAED---AAIALFGLVEMGFKP--ESDSWALLVELICRGRKLLFAFELLDELVIKESGT 517 (521)
Q Consensus 447 p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 517 (521)
|+..+-..+..++.+.....+ ++.+++.+.+.+ .| .......|.-++.+.|++++|.++++.+++..|++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 444444445555555554433 555555544432 12 12334444455555555555555555555555544
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.62 E-value=0.21 Score=38.78 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=12.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 009977 243 TLIDGLCKNGRFREAIELFEEMV 265 (521)
Q Consensus 243 ~l~~~~~~~g~~~~A~~~~~~~~ 265 (521)
.+..+|.+.+++++|+.+++.+.
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCHHHHHHHHhcCC
Confidence 34455555555555555555443
No 246
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.40 E-value=4.2 Score=39.88 Aligned_cols=80 Identities=9% Similarity=-0.048 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHH
Q 009977 131 GIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIK 210 (521)
Q Consensus 131 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 210 (521)
.....-+..+.+.+++...+..+.. .+.+...-.....+....|+.++|....+.+=...... +..+..++.
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~--p~~c~~l~~ 144 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQ--PNACDKLFS 144 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCC--CTHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC--cHHHHHHHH
Confidence 3334455556666777666653321 13333444445666666777666665555443322222 234555555
Q ss_pred HHHhcCCh
Q 009977 211 HHCKRGTL 218 (521)
Q Consensus 211 ~~~~~g~~ 218 (521)
.+.+.|.+
T Consensus 145 ~~~~~g~l 152 (618)
T 1qsa_A 145 VWRASGKQ 152 (618)
T ss_dssp HHHHTTCS
T ss_pred HHHHCCCC
Confidence 55555544
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.13 E-value=0.69 Score=46.24 Aligned_cols=54 Identities=11% Similarity=0.056 Sum_probs=40.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 281 IDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEM 335 (521)
Q Consensus 281 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 335 (521)
...+...|+++-|+++-++....- +.+-.+|..|..+|...|+++.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 445666788888888888887763 455667888888888888888888777665
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.52 E-value=1.6 Score=40.22 Aligned_cols=57 Identities=11% Similarity=0.106 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 009977 383 NIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLM 440 (521)
Q Consensus 383 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 440 (521)
..++..+...|+++++...+..+....+ .+...+..++.++.+.|+..+|++.|+..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444555555544444443322 14444444555555555555555444443
No 249
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.16 E-value=9.5 Score=37.39 Aligned_cols=116 Identities=9% Similarity=-0.016 Sum_probs=71.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHhHHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHH
Q 009977 358 GRVDEALELLKEMKERGCKADIVTFNII----LGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKA 433 (521)
Q Consensus 358 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 433 (521)
.+.+.|...+....+.... +......+ +......+...++...+....... .+.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 4788999999888654322 33332222 223333443456666666655442 2333344444444567999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 434 IELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVE 477 (521)
Q Consensus 434 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 477 (521)
...|+.|.... ........-+.+++...|+.++|..+|+++..
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99998886421 12344455677788889999999999988874
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.97 E-value=6.4 Score=42.19 Aligned_cols=172 Identities=10% Similarity=0.105 Sum_probs=103.4
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhc
Q 009977 100 TILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIES 179 (521)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (521)
.++..+...+.++-+.++.... +.++.....++++|...|++++|.+.|++... +...+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~---------- 879 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQF---------- 879 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSC----------
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhh----------
Confidence 4566677778777776655443 23344445677788888999999999887642 111111000
Q ss_pred CCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CC--HHHHHHHHHHHHhcCChHH
Q 009977 180 NQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSY-PN--LITYSTLIDGLCKNGRFRE 256 (521)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~g~~~~ 256 (521)
........+... ......-..-|..++..+.+.|.++.+.++-....+..... ++ ...|..+.+.+...|++++
T Consensus 880 ~~~~~~~~~~~~---~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 880 AVLREFQEIAEK---YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp SSHHHHHHHHHT---TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred hhhccccccccc---ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 000111111110 00112234567778888888888888888877766543321 11 2257888888899999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 009977 257 AIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAK 294 (521)
Q Consensus 257 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 294 (521)
|...+-.+.... --...+..++...+..|..+.-.
T Consensus 957 Ay~aL~~~pd~~---~r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 957 AHVALMVLSTTP---LKKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp GGHHHHHHHHSS---SCHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHhCCCHH---HHHHHHHHHHHHHHhCCChhhhh
Confidence 988888776542 23456777777777777665543
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.73 E-value=2.8 Score=32.59 Aligned_cols=60 Identities=7% Similarity=-0.089 Sum_probs=41.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCCH-------HHHHHHHHHHHhcCCchHHHHHHHHhhh
Q 009977 64 AAISLIKCEKEPQCALEIFNTVSEQKGFNHNN-------ATYATILDKLARYKKFEAVDAVLRQMTY 123 (521)
Q Consensus 64 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (521)
.-+..+...+.++.|+-+.+.+....+..++. .+...+.+++...|++.+|...|++.++
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34556778888988888877754332223331 3566677888899999999999988654
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.61 E-value=0.94 Score=41.69 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 348 TTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKL 405 (521)
Q Consensus 348 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 405 (521)
..++..+...|++++|+..+..+....+- +...+..++.++.+.|+..+|++.|+.+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344444444555544444444443221 3444444444555555555554444443
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.05 E-value=8.2 Score=41.36 Aligned_cols=153 Identities=13% Similarity=0.115 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---------------
Q 009977 168 AISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQ--------------- 232 (521)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------- 232 (521)
....++..+...+.++.+.++.... +.++.....++.+|...|++++|.+.|.+....-
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~ 887 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQE 887 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccc
Confidence 3445666777788888887766544 2345555677888999999999999997742110
Q ss_pred ------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-C--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 233 ------MSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILP-D--ALTYNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 233 ------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
....-..-|..++..+.+.|.++.++++-..+++..+..+ + ...|..+.+.+...|++++|...+-.+...
T Consensus 888 ~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 888 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred ccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 0001234578889999999999999999888876532111 1 125788899999999999999999888765
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHH
Q 009977 304 GCNPNVFNYTTLMNGFCKEGKLQEA 328 (521)
Q Consensus 304 ~~~~~~~~~~~l~~~~~~~~~~~~A 328 (521)
.. -......|+...+..|..+.-
T Consensus 968 ~~--r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 968 PL--KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp SS--CHHHHHHHHHHHHHHCCHHHH
T ss_pred HH--HHHHHHHHHHHHHhCCChhhh
Confidence 43 345666777777766665443
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.97 E-value=0.9 Score=38.55 Aligned_cols=51 Identities=8% Similarity=-0.018 Sum_probs=28.6
Q ss_pred HHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhh
Q 009977 105 LARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKI 156 (521)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 156 (521)
+.+.|++++|++....-++.. |.+......++..++-.|++++|.+-++.+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344555566655555555543 445555555666666666666665555544
No 255
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.54 E-value=8.8 Score=33.97 Aligned_cols=81 Identities=15% Similarity=0.001 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009977 413 NKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVE 492 (521)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 492 (521)
|+.....+...|.+.+++.+|...| +. |-.+.+..+..++..+...+...++ +...... +-
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~--il--g~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRa-VL 195 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL--VL--GTKESPEVLARMEYEWYKQDESHTA--------------PLYCARA-VL 195 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH--TT--SCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHH-HH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH--Hh--cCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHH-HH
Confidence 5566667777777888887777665 22 3344445554444444333321111 1111122 22
Q ss_pred HHHccCcHHHHHHHHHHHHH
Q 009977 493 LICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 493 ~~~~~g~~~~A~~~~~~m~~ 512 (521)
-|.-.++...|..+++...+
T Consensus 196 ~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 196 PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 34556677777776665554
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.15 E-value=2.5 Score=35.88 Aligned_cols=57 Identities=19% Similarity=0.133 Sum_probs=49.6
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhcc
Q 009977 67 SLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYET 125 (521)
Q Consensus 67 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 125 (521)
..+.+.|++++|++.....++.. |-|...-..+++.++-.|+++.|.+-++...+.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 45678899999999998887765 6788888899999999999999999999998775
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.82 E-value=4.8 Score=29.88 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=27.2
Q ss_pred cHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 009977 378 DIVTFNIILGGLCREGK---IEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLML 441 (521)
Q Consensus 378 ~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (521)
+..+--.+..++.+..+ ..+++.+++.+.+.+..-....+-.+.-++.+.|++++|.++.+.++
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333334444444432 22344444444443321122333334444455555555555555555
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.23 E-value=3.6 Score=28.74 Aligned_cols=72 Identities=7% Similarity=0.067 Sum_probs=53.1
Q ss_pred HHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009977 421 LNFSCQKG-ELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVEL 493 (521)
Q Consensus 421 ~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 493 (521)
...+.+.. +.=+..+-++.+....+.|++.+..+.+++|.+..++..|.++++-....- .+...+|..+++-
T Consensus 16 ~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqE 88 (109)
T 1v54_E 16 VTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHH
Confidence 33344444 566777888888877889999999999999999999999999998877321 2334567766654
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.19 E-value=2.8 Score=39.15 Aligned_cols=99 Identities=11% Similarity=0.003 Sum_probs=50.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHhhccccC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHH----HH
Q 009977 132 IFLNLMKHFSNCSLHERVLEMFHKIHPITR-EKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCI----FN 206 (521)
Q Consensus 132 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~ 206 (521)
+...++..|.+.|++++|.+.|.++..... ...-...+...++.+...+++..+...+.++.....-.+++.. ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 444556666666666666666665543211 1222344555566666666666666666655321111122111 11
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 009977 207 ILIKHHCKRGTLESAFEVLKEMKK 230 (521)
Q Consensus 207 ~l~~~~~~~g~~~~A~~~~~~~~~ 230 (521)
.-+..+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 223334556777777776666544
No 260
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.05 E-value=13 Score=32.60 Aligned_cols=165 Identities=13% Similarity=0.081 Sum_probs=82.8
Q ss_pred HHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHH----HHHhhhcCCCCCcHHHHHHHHH
Q 009977 135 NLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNF----LKYSNQHLRLKPNTCIFNILIK 210 (521)
Q Consensus 135 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~l~~ 210 (521)
++..-|.+.+++++|++++..- ...+.+.|+...|.++ ++.+ ...+.+++......++.
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~g----------------a~~ll~~~Q~~sa~DLa~llvev~-~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQG----------------ALSFLKAKQGGSGTDLIFYLLEVY-DLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHH-HHcCCCCCHHHHHHHHH
Confidence 3344466667777777765443 1223444555444332 2222 22356666666666666
Q ss_pred HHHhcCChH-HHHHHHHHH----HhCCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 009977 211 HHCKRGTLE-SAFEVLKEM----KKSQM-SYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGF 284 (521)
Q Consensus 211 ~~~~~g~~~-~A~~~~~~~----~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 284 (521)
.+.....-+ .=.++++++ .+.|. +..++..+..++..|.+.|++.+|...|-.- ..-|...+..++.-+
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~-----~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG-----THDSMIKYVDLLWDW 175 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS-----CHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC-----CCccHHHHHHHHHHH
Confidence 655433211 112222222 22221 2357788888888888888888888877421 111344455554444
Q ss_pred HhC---CCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 285 CRG---GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMK 336 (521)
Q Consensus 285 ~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 336 (521)
... |...++--++- . .+-.|.-.++...|..+++...
T Consensus 176 ~~~~~~~~~~e~dlf~~--------------R-aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 176 LCQVDDIEDSTVAEFFS--------------R-LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTCCCHHHHHHHHH--------------H-HHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHhcCCCCcchHHHHHH--------------H-HHHHHHHhcCHHHHHHHHHHHH
Confidence 433 33333211111 1 1223445677777777776553
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.36 E-value=5.8 Score=27.72 Aligned_cols=76 Identities=11% Similarity=0.037 Sum_probs=55.1
Q ss_pred HHHHHHHHHH-hcC-CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009977 381 TFNIILGGLC-REG-KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLV 457 (521)
Q Consensus 381 ~~~~l~~~~~-~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 457 (521)
-|..--..|. +.. +.-+..+-++.+...+.-|++......+.+|.+.+++.-|.++++-+..+ ..+...+|..++.
T Consensus 10 eF~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 10 EFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 3444334444 333 56677788888888888999999999999999999999999999888753 3333455666654
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.96 E-value=8.2 Score=29.08 Aligned_cols=65 Identities=12% Similarity=0.075 Sum_probs=27.1
Q ss_pred CcHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 009977 377 ADIVTFNIILGGLCREGK---IEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLML 441 (521)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (521)
|+..+--.+..++.+..+ ..+++.+++.+...+..-.....-.+.-++.+.|++++|.++.+.++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333343334444444432 22344444444443221122222233334445555555555555555
No 263
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.46 E-value=16 Score=32.01 Aligned_cols=80 Identities=16% Similarity=0.054 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCccCHHHHHH
Q 009977 343 DTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCRE---GKIEEALGMLEKLWYDGIYLNKASYRI 419 (521)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~ 419 (521)
++.....+...|.+.+++.+|...|-. |-.-+...+..++.-+... |...++- ...-..
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~d--------------lf~~Ra 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVA--------------EFFSRL 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHH--------------HHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHH--------------HHHHHH
Confidence 566777777778888888887765531 1111344444444443333 3332221 111122
Q ss_pred HHHHHHcCCCHHHHHHHHHHHH
Q 009977 420 VLNFSCQKGELEKAIELLRLML 441 (521)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~ 441 (521)
++. |.-.|+...|..+++...
T Consensus 195 VL~-yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 VFN-YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHH-HHHTTBHHHHHHHHHHHH
T ss_pred HHH-HHHhcCHHHHHHHHHHHH
Confidence 222 345677777777777654
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.87 E-value=18 Score=32.00 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 009977 343 DTIGYTTLINCFCRAGRVDEALELL 367 (521)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~~~A~~~~ 367 (521)
|+.....+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4566666777777777777777665
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.09 E-value=9.8 Score=28.23 Aligned_cols=63 Identities=8% Similarity=0.071 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009977 429 ELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVE 492 (521)
Q Consensus 429 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 492 (521)
|.-+..+-++.+....+.|++.+..+.+++|.+..++..|.++++-....- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 333455555555555666777777777777777777777777776655321 223344555543
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.91 E-value=9 Score=35.67 Aligned_cols=61 Identities=10% Similarity=-0.006 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 311 NYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKP--DTIGYTTLINCFCRAGRVDEALELLKEMK 371 (521)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 371 (521)
+...++..|.+.|+++.|.+.+.++......+ -...+-..+..+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34455555555555555555555554321111 13444445555555555555555555543
No 267
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.13 E-value=27 Score=31.83 Aligned_cols=295 Identities=11% Similarity=0.033 Sum_probs=155.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc---HHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCCHHHH--
Q 009977 168 AISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPN---TCIFNILIKHHCKRG-TLESAFEVLKEMKKSQMSYPNLITY-- 241 (521)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~-- 241 (521)
+...+...|.+.|+.++...++.....-.+.-+- ......++..+.... ..+.-.++..+..+... .+-.+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~--~~~r~flr 98 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK--QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH--HTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 5667888999999999999999877533222222 335667777776643 33444455544443211 111223
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCcch
Q 009977 242 ----STLIDGLCKNGRFREAIELFEEMVSKDQILPD----ALTYNVLIDGFCRGGKVDRAKKIMEFMKNN--GCNPNVFN 311 (521)
Q Consensus 242 ----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 311 (521)
..++..|...|++.+|.+++.++.+.-.-..| ...+..-+..|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 25788999999999999999888764211111 234566677888899999999999877642 22233332
Q ss_pred HH----HHHHHHH-hcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCcH
Q 009977 312 YT----TLMNGFC-KEGKLQEAKEVFDEMKNFLLKPD------TIGYTTLINCFCRAGRVDEALELLK-EMKERGCKADI 379 (521)
Q Consensus 312 ~~----~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~-~~~~~~~~~~~ 379 (521)
.. .-+..+. ..+++..|...|-+..+.--..+ ...|..+ .+.. .++..+.-.++. .....-..|+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl-~~~r~el~~~l~~~~~~~~~~pei 256 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIM-LGQSDDVNQLVSGKLAITYSGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHH-TTCGGGHHHHHHSHHHHTTCSHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHH-cCCHHHHHHHhccccccccCCccH
Confidence 22 1233455 78899999888766532100111 1123222 2222 233222222221 11111123555
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 009977 380 VTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVR 458 (521)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~ 458 (521)
..+..++.+| ..+++.+...+++..... +..|+.....+-..+. . --...+..+. .| ...++..+...
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~~~~-l~~D~~l~~h~~~L~~--~---Ir~~~L~~i~----~pYsrIsl~~iA~~ 325 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEYKKE-LAEDVIVQAHLGTLYD--T---MLEQNLCRII----EPYSRVQVAHVAES 325 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHSTTT-TTTSHHHHHHHHHHHH--H---HHHHHHHHHH----TTCSEEEHHHHHHH
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHHH-HhcChHHHHHHHHHHH--H---HHHHHHHHHh----HhhceeeHHHHHHH
Confidence 5566666654 456777766666654332 3334432111100000 0 0011111222 23 33444445444
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 009977 459 LCKAGMAEDAAIALFGLVEMG 479 (521)
Q Consensus 459 ~~~~g~~~~a~~~~~~~~~~~ 479 (521)
+.- ..++++..+-+|...|
T Consensus 326 l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 326 IQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp HTC--CHHHHHHHHHHHHHTT
T ss_pred HCc--CHHHHHHHHHHHHHCC
Confidence 432 5678888888887644
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.39 E-value=8.2 Score=28.62 Aligned_cols=54 Identities=17% Similarity=0.070 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccC
Q 009977 464 MAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESGT 517 (521)
Q Consensus 464 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 517 (521)
|.-+..+-++.+...++-|++......++++.+.+|+.-|.++|+-+..|-+..
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~ 121 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH 121 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc
Confidence 445677778888888899999999999999999999999999999998876443
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=81.93 E-value=19 Score=29.07 Aligned_cols=67 Identities=18% Similarity=0.112 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILP 272 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 272 (521)
.|...+..+ ..+...++.++|..|...++...-...|......+...|++.+|.++|+.-++. +..|
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P 148 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRP 148 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 444444433 244567889999999888877667788888888889999999999999988876 3455
No 270
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=79.85 E-value=22 Score=28.52 Aligned_cols=37 Identities=11% Similarity=0.173 Sum_probs=18.8
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009977 426 QKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAG 463 (521)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 463 (521)
+-.+.+.|+-++.+|++.| +|....-..++-+...-|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 4455666666666666655 554443333343443333
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.16 E-value=16 Score=25.42 Aligned_cols=78 Identities=22% Similarity=0.124 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009977 394 KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALF 473 (521)
Q Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 473 (521)
..++|..+-+-+...+. ...+-.+-+..+...|++++|..+.+.. ..||...|.+| +-.+.|..+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFAL--CEWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHH--HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHHH
Confidence 56666666666555432 1112222233455667777666654443 25555554333 3346666666666555
Q ss_pred HHHHCC
Q 009977 474 GLVEMG 479 (521)
Q Consensus 474 ~~~~~~ 479 (521)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555443
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.07 E-value=16 Score=25.44 Aligned_cols=78 Identities=21% Similarity=0.141 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009977 394 KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALF 473 (521)
Q Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 473 (521)
..++|..+-+-+...+. ....-.+-+..+...|++++|..+.+.. ..||...|.+| +-.+.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLAL--CEYRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHH--HHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHHH
Confidence 56666666666655432 1122222233455667777776665543 25566555333 3346666666666555
Q ss_pred HHHHCC
Q 009977 474 GLVEMG 479 (521)
Q Consensus 474 ~~~~~~ 479 (521)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 554443
No 273
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=76.59 E-value=44 Score=31.19 Aligned_cols=141 Identities=11% Similarity=0.048 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CcHhHHHHHHHHHHh
Q 009977 324 KLQEAKEVFDEMKNF--------LLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCK----ADIVTFNIILGGLCR 391 (521)
Q Consensus 324 ~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~ 391 (521)
..++...++...... ++..+......++.. ..|+..+++.+++.+...... ....+...+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 456666777666542 233455555655554 478888888888877654221 011222222211111
Q ss_pred cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----
Q 009977 392 EGKIEEALGMLEKLWYDGIYLNKASYRIVLNFS---CQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGM---- 464 (521)
Q Consensus 392 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---- 464 (521)
.. ..--+-....|. +++++ .+.++.+.|+.++.+|++.|.+|....-..+..+...-|.
T Consensus 244 ~~-------------~~~dk~gd~~yd-~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~ 309 (447)
T 3pvs_A 244 RS-------------ARFDNKGDRFYD-LISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPR 309 (447)
T ss_dssp CC-------------CC---CCHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTH
T ss_pred hh-------------hccCCccchHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChh
Confidence 10 000000112222 33333 3567899999999999998887765554445555555453
Q ss_pred -HHHHHHHHHHHHHCCC
Q 009977 465 -AEDAAIALFGLVEMGF 480 (521)
Q Consensus 465 -~~~a~~~~~~~~~~~~ 480 (521)
...|...++.....|.
T Consensus 310 a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 310 AMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 3345555665566663
No 274
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=73.08 E-value=28 Score=28.15 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=16.3
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009977 426 QKGELEKAIELLRLMLCRGFLPHYATSNELLVRL 459 (521)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 459 (521)
+-.+.+.|+.++.+|++.|-+|....-..++-+.
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3455555555555555555444443333333333
No 275
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=72.75 E-value=49 Score=28.99 Aligned_cols=77 Identities=12% Similarity=0.034 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 009977 429 ELEKAIELLRLMLCRGFLP--HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFEL 506 (521)
Q Consensus 429 ~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 506 (521)
+..+.+++-.-+....+.| -.-++...+..+.+.+++..|..+-+++++.+ |+ ....++|.++
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~--p~-------------~~~a~qArki 249 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII--SS-------------GPRAEQARKI 249 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CS-------------SHHHHHHHHH
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CC-------------HHHHHHHHHH
Confidence 4455666666666556666 33445667778889999999999999999875 32 2234557777
Q ss_pred HHHHHHcCccCccC
Q 009977 507 LDELVIKESGTIQV 520 (521)
Q Consensus 507 ~~~m~~~~~~~~~v 520 (521)
+....+++.+.+++
T Consensus 250 l~~ce~~~~Da~ei 263 (325)
T 3mv2_A 250 KNKADSMASDAIPI 263 (325)
T ss_dssp HHHHHTSCCCSSCC
T ss_pred HHHHhcCCCCcccc
Confidence 77777766665554
No 276
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=70.61 E-value=30 Score=27.69 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHHHHCCCc
Q 009977 393 GKIEEALGMLEKLWYDGIY 411 (521)
Q Consensus 393 g~~~~a~~~~~~~~~~~~~ 411 (521)
.+.+.|+-++.+|++.|-.
T Consensus 21 SDpDAAly~LaRMl~~GED 39 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGD 39 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 4555555555555555443
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=70.15 E-value=34 Score=26.13 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 009977 219 ESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILP 272 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 272 (521)
+++.++|..|...++...-+..|......+...|++.+|.++|+.-++. +..|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 3478888888887776566777788888888888888888888888776 3455
No 278
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.56 E-value=43 Score=27.01 Aligned_cols=54 Identities=17% Similarity=0.090 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHCCCcc-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 009977 394 KIEEALGMLEKLWYDGIYL-NKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP 447 (521)
Q Consensus 394 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 447 (521)
...++.++|..|...|+.. -...|......+...|++++|.++|+.-++.+-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3556667777666654432 23445566666666777777777777766666566
No 279
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=69.38 E-value=18 Score=28.14 Aligned_cols=71 Identities=10% Similarity=0.147 Sum_probs=54.5
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhc--cCCcCHHHHHHHHHHHHccCcH
Q 009977 75 PQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYE--TCKFHEGIFLNLMKHFSNCSLH 146 (521)
Q Consensus 75 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 146 (521)
.+.+++-+...++..|++.+.. -..++..+...+..-.|.++++.+.+. +...+..|.+.-+..+...|-.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 4667777777777778887654 446777888888888999999999887 6667788888888888877753
No 280
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=68.12 E-value=27 Score=24.26 Aligned_cols=77 Identities=17% Similarity=0.089 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 009977 359 RVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLR 438 (521)
Q Consensus 359 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (521)
..++|..+-+-+...+. ....-.+-+..+...|++++|..+.+.+ ..||...|..|.. .+.|-.+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555444432 2222222334455566666665544332 2455555544433 35555555555554
Q ss_pred HHHHC
Q 009977 439 LMLCR 443 (521)
Q Consensus 439 ~~~~~ 443 (521)
++..+
T Consensus 93 ~la~s 97 (115)
T 2uwj_G 93 GLGGS 97 (115)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 55433
No 281
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=67.36 E-value=29 Score=24.21 Aligned_cols=76 Identities=18% Similarity=0.111 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 009977 359 RVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLR 438 (521)
Q Consensus 359 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (521)
..++|..+-+-+...+. ....-.+-+..+...|++++|..+.+.+ ..||...|..|.. .+.|-.+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555444444432 2222222233455556666665554433 2445555544433 24455555555444
Q ss_pred HHHH
Q 009977 439 LMLC 442 (521)
Q Consensus 439 ~~~~ 442 (521)
++..
T Consensus 94 ~la~ 97 (116)
T 2p58_C 94 RLAR 97 (116)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 4443
No 282
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=64.64 E-value=57 Score=26.79 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 009977 219 ESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILP 272 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 272 (521)
+.+.++|..|...++...-...|......+...|++.+|.++|+.-++. +..|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 5777899999888887667788888888889999999999999988876 3455
No 283
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=63.44 E-value=1.2e+02 Score=30.04 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=16.2
Q ss_pred ChHHHHHHHHh---cCChHHHHHHHHHh
Q 009977 61 SHGAAISLIKC---EKEPQCALEIFNTV 85 (521)
Q Consensus 61 ~~~~l~~~~~~---~~~~~~A~~~~~~~ 85 (521)
.+..||..|.+ ..++.+|+++|--+
T Consensus 355 N~arLI~~Yt~~F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 355 RFANILANYTKSFRYSDPRVAVEYLVLI 382 (661)
T ss_dssp CHHHHHHHHHTTTTTTCHHHHHHHHHGG
T ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 45566666654 36777777777665
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=59.41 E-value=47 Score=27.67 Aligned_cols=89 Identities=9% Similarity=-0.012 Sum_probs=44.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCcc----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009977 385 ILGGLCREGKIEEALGMLEKLWYD--GIYL----NKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVR 458 (521)
Q Consensus 385 l~~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 458 (521)
-+..+....++++|.+++++..+. +... ........+..-.....-.-+..+.+++ .. .+........+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 366777778888888888776543 2221 0011112222222222222223333333 22 3445555556666
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 009977 459 LCKAGMAEDAAIALFGLV 476 (521)
Q Consensus 459 ~~~~g~~~~a~~~~~~~~ 476 (521)
+.+.|+.++|..+|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 677777777777765544
No 285
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=59.35 E-value=41 Score=25.44 Aligned_cols=58 Identities=14% Similarity=0.218 Sum_probs=42.5
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCc
Q 009977 87 EQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSL 145 (521)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (521)
+..|++.+..- ..++..+...+..-.|.++++.+.+.+...+..|.+..+..+...|-
T Consensus 14 ~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 14 KETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 45576666543 35666666677777899999999888766778888888888877764
No 286
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=58.76 E-value=62 Score=25.11 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 009977 219 ESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD 273 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 273 (521)
+.+.++|..|...++...-+..|......+-..|++.+|.++|+.-++. +..|-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcH
Confidence 3477788888888876666777888888888888888888888888776 35553
No 287
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=58.24 E-value=39 Score=28.18 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKE 227 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 227 (521)
.......+..+.+.|+-++|.++|=+
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 33334444455555555555554433
No 288
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.79 E-value=1.4e+02 Score=28.32 Aligned_cols=25 Identities=8% Similarity=0.210 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHh
Q 009977 97 TYATILDKLARYKKFEAVDAVLRQM 121 (521)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~ 121 (521)
.+|.++..|...+.+++|..+..+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 3555555555555555555555554
No 289
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=55.26 E-value=43 Score=25.29 Aligned_cols=59 Identities=10% Similarity=0.209 Sum_probs=42.4
Q ss_pred hhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCc
Q 009977 85 VSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSL 145 (521)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (521)
.++..|++.+..- ..++..+...+ .-.|.++++.+.+.+...+..|.+..+..+...|-
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3466677776653 34556666666 67899999999888766778888888888777664
No 290
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=53.98 E-value=69 Score=24.33 Aligned_cols=61 Identities=5% Similarity=0.115 Sum_probs=43.1
Q ss_pred hhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcH
Q 009977 85 VSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLH 146 (521)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (521)
.++..|++.+.. -..++..+...+..-.|.++++.+.+.+...+..|.+..+..+...|-.
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 345556665443 4456777777777888999999998887677888888888888777643
No 291
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=52.55 E-value=78 Score=24.43 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=37.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCcc--CHHHHHHHHH-H-----HHcCCCHHHHHHHHHHHHH
Q 009977 389 LCREGKIEEALGMLEKLWYDGIYL--NKASYRIVLN-F-----SCQKGELEKAIELLRLMLC 442 (521)
Q Consensus 389 ~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~ 442 (521)
+...|++-+|.++++.+-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344588888888888887764444 4556667766 2 2356888888888888764
No 292
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=50.15 E-value=83 Score=24.01 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=29.9
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009977 433 AIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPE 483 (521)
Q Consensus 433 a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 483 (521)
+.++|..|...|+-- ....|......+...|++++|..+|+.-++.+..|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 556666666555444 344455555566666666666666666665555553
No 293
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=47.22 E-value=2.7e+02 Score=29.06 Aligned_cols=109 Identities=13% Similarity=0.102 Sum_probs=66.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----------------
Q 009977 172 CLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMS----------------- 234 (521)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------------- 234 (521)
++..+...|.++-|.++... .+.++..-..++++|...|++++|.+.|++... |..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~------~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~ 888 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 888 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccC
Confidence 45555666666665554432 223444445567777777777777777765421 110
Q ss_pred -----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhCC
Q 009977 235 -----YPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDA----LTYNVLIDGFCRGG 288 (521)
Q Consensus 235 -----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 288 (521)
.....-|..++..+-+.+.++-+.++-+.+++.-. +.|. ..|..+.++.+..|
T Consensus 889 ~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 889 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 01123678889999999999999988888876421 2232 35666666666544
No 294
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=46.12 E-value=1.6e+02 Score=30.78 Aligned_cols=88 Identities=10% Similarity=-0.042 Sum_probs=49.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-----------------
Q 009977 385 ILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP----------------- 447 (521)
Q Consensus 385 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p----------------- 447 (521)
++..|...|.++-+.++..-. ..++..--.+..+|...|++++|...|+++.. |+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 455566666665544332111 12333333455667777777777777776542 2211
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 448 ------HYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 448 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
....|..++..+.+.+.++.+..+-+.+++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1124566777777777777777777666653
No 295
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=43.76 E-value=78 Score=21.86 Aligned_cols=56 Identities=14% Similarity=0.002 Sum_probs=32.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHHHH
Q 009977 433 AIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLV-----EMGFKPESDSWALL 490 (521)
Q Consensus 433 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~~l 490 (521)
|.++.+++...|+.|+..+...++..|...+- + +..+.++.. ..|..|+...++.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 34444555555888888888888887776664 1 333222222 35667777666544
No 296
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=43.59 E-value=58 Score=20.54 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcH
Q 009977 452 SNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKL 500 (521)
Q Consensus 452 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 500 (521)
++.++..++...-.++++..+.++++.| ..+...|..-++.+.+..-.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQF~ 52 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQFL 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHH
Confidence 4455556665556677777777777666 45666666666655554433
No 297
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=43.40 E-value=1.2e+02 Score=23.79 Aligned_cols=36 Identities=8% Similarity=-0.167 Sum_probs=27.9
Q ss_pred CCCHHHHH--HHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 481 KPESDSWA--LLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 481 ~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
-|...+|. .....|...|-.++...+|..+..++|.
T Consensus 203 iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 203 VPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp TTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred CCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 57766554 3446677899999999999999998874
No 298
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=43.37 E-value=1.2e+02 Score=24.11 Aligned_cols=111 Identities=7% Similarity=-0.085 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHH
Q 009977 93 HNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTC 172 (521)
Q Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 172 (521)
+|...-...+..+.+.+..+....+.+ +... ++.......+.++...|..+ +...+..+. ..++..+-...
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~-~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l----~~~~~~vr~~a 101 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIK-ALKD---EDAWVRRAAADALGQIGDER-AVEPLIKAL----KDEDGWVRQSA 101 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHH-HTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHHT----TCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHH-HHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHH----cCCCHHHHHHH
Confidence 455555555666666665333333333 3321 24444445555555555432 222222222 13444444444
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCC
Q 009977 173 LNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGT 217 (521)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 217 (521)
+.++...++.+.. ..+..+.. .++..+-...+.++.+.|+
T Consensus 102 ~~aL~~~~~~~~~-~~L~~~l~----d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 102 AVALGQIGDERAV-EPLIKALK----DEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHHHCCGGGH-HHHHHHTT----CSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCcHHHH-HHHHHHHh----CCCHHHHHHHHHHHHHcCC
Confidence 5555554443222 22222221 2444444444445554444
No 299
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.18 E-value=1.1e+02 Score=23.61 Aligned_cols=52 Identities=6% Similarity=-0.068 Sum_probs=28.9
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009977 433 AIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES 484 (521)
Q Consensus 433 a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 484 (521)
...+|..|...|+-- -...|......+...|++.+|..+|..-++.+..|..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 445566666555444 3344455555555666666666666666655555544
No 300
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=41.52 E-value=1e+02 Score=22.63 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=11.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 009977 349 TLINCFCRAGRVDEALELLKEM 370 (521)
Q Consensus 349 ~l~~~~~~~~~~~~A~~~~~~~ 370 (521)
.++.-|...|+.++|...++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444455555555555555554
No 301
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=41.18 E-value=86 Score=23.23 Aligned_cols=58 Identities=12% Similarity=0.212 Sum_probs=40.7
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcC-CchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCc
Q 009977 87 EQKGFNHNNATYATILDKLARYK-KFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSL 145 (521)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (521)
+..|++.+..- ..++..+...+ ..-.|.++++.+.+.+...+..|.+..++.+...|-
T Consensus 10 ~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 10 RKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 44566665543 35666676666 677899999999888766777888887777777664
No 302
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=40.75 E-value=55 Score=24.11 Aligned_cols=46 Identities=9% Similarity=0.149 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCc
Q 009977 100 TILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSL 145 (521)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (521)
.++..+...+..-.|.++++.+.+.+...+..|.+..++.+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4566666666777888888888877666677787777777777664
No 303
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=39.80 E-value=1.4e+02 Score=23.75 Aligned_cols=152 Identities=13% Similarity=0.005 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHH
Q 009977 129 HEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNIL 208 (521)
Q Consensus 129 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 208 (521)
+.......+..+.+.|..+ +...+..+.. .++...-...+.++...++.+.. ..+..++. .++..+-...
T Consensus 32 ~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~----~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~----~~~~~vr~~a 101 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDER-AVEPLIKALK----DEDAWVRRAAADALGQIGDERAV-EPLIKALK----DEDGWVRQSA 101 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT----CSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCcc-HHHHHHHHHc----CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc----CCCHHHHHHH
Confidence 4445555555555555532 2332322221 34555555555555555543222 22222222 2455555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Q 009977 209 IKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGG 288 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 288 (521)
+.++.+.|+.+ +...+..+... ++...-...+.++...|+. ++...+..+.. .++...-...+.++.+.+
T Consensus 102 ~~aL~~~~~~~-~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 102 AVALGQIGDER-AVEPLIKALKD----EDWFVRIAAAFALGEIGDE-RAVEPLIKALK----DEDGWVRQSAADALGEIG 171 (211)
T ss_dssp HHHHHHHCCGG-GHHHHHHHTTC----SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT----CSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCcHH-HHHHHHHHHhC----CCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc----CCCHHHHHHHHHHHHHhC
Confidence 56666665533 33333333321 4544545555555555543 23334444432 234444444455555554
Q ss_pred CHHHHHHHHHHHH
Q 009977 289 KVDRAKKIMEFMK 301 (521)
Q Consensus 289 ~~~~a~~~~~~~~ 301 (521)
. ..+...+..+.
T Consensus 172 ~-~~~~~~L~~~l 183 (211)
T 3ltm_A 172 G-ERVRAAMEKLA 183 (211)
T ss_dssp S-HHHHHHHHHHH
T ss_pred c-hhHHHHHHHHH
Confidence 4 23333333333
No 304
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=38.15 E-value=69 Score=24.74 Aligned_cols=26 Identities=12% Similarity=0.164 Sum_probs=12.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 278 NVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 278 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
..++..+...+..-.|.++++.+.+.
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 33344444444444555555555444
No 305
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.96 E-value=1.3e+02 Score=22.86 Aligned_cols=68 Identities=18% Similarity=0.232 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCCCH
Q 009977 381 TFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGE--LEKAIELLRLMLCRGFLPHY 449 (521)
Q Consensus 381 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~ 449 (521)
....++.-|...|+.++|...++++...... ...+...+..++-+.++ .+.+..++..+...++-+..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4567888888899999999999888532111 22233444445554332 45566777777766655433
No 306
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=36.61 E-value=1.6e+02 Score=23.26 Aligned_cols=17 Identities=6% Similarity=-0.072 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHHHhcCC
Q 009977 94 NNATYATILDKLARYKK 110 (521)
Q Consensus 94 ~~~~~~~l~~~~~~~~~ 110 (521)
|...-...+..+...+.
T Consensus 27 ~~~vr~~A~~~L~~~~~ 43 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGD 43 (201)
T ss_dssp CHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 44444444444444444
No 307
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=35.61 E-value=96 Score=23.49 Aligned_cols=59 Identities=8% Similarity=0.202 Sum_probs=41.2
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcC-CchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcH
Q 009977 87 EQKGFNHNNATYATILDKLARYK-KFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLH 146 (521)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (521)
+..|++.+..- ..++..+...+ ..-.|.++++.+.+.+...+..|.+..+..+...|-.
T Consensus 9 ~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 9 KDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 44566665543 34556666555 6778999999998877667778888888887777653
No 308
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=35.34 E-value=57 Score=24.41 Aligned_cols=47 Identities=6% Similarity=0.108 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCc
Q 009977 99 ATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSL 145 (521)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (521)
..++..+...+..-.|.++++.+.+.+...+..|.+..+..+...|-
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 35566666666677788888888777666677777777777777664
No 309
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.01 E-value=1.5e+02 Score=22.78 Aligned_cols=51 Identities=4% Similarity=-0.115 Sum_probs=28.8
Q ss_pred cCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH-HH-----HhcCCHHHHHHHHHHHH
Q 009977 426 QKGELEKAIELLRLMLCRGFLP--HYATSNELLV-RL-----CKAGMAEDAAIALFGLV 476 (521)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~-~~-----~~~g~~~~a~~~~~~~~ 476 (521)
..|++=+|-++++..-...-.+ ....|..||. .. .+.|+...|..++.+..
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3477777777777766543334 4445555555 21 24566666666665544
No 310
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=34.52 E-value=2.5e+02 Score=25.09 Aligned_cols=25 Identities=16% Similarity=0.394 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 009977 241 YSTLIDGLCKNGRFREAIELFEEMV 265 (521)
Q Consensus 241 ~~~l~~~~~~~g~~~~A~~~~~~~~ 265 (521)
...++.-|...|+.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 4567777888888888888888763
No 311
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=33.49 E-value=1e+02 Score=20.16 Aligned_cols=58 Identities=9% Similarity=0.212 Sum_probs=37.2
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcC-CchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCc
Q 009977 87 EQKGFNHNNATYATILDKLARYK-KFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSL 145 (521)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (521)
+..|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..+....+..+...|-
T Consensus 9 ~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 9 KKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34466655543 35566665554 566778888888776655677777777777766553
No 312
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.26 E-value=2e+02 Score=23.58 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=19.3
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009977 328 AKEVFDEMKNFLLKPD-TIGYTTLINCFCRAGRVDEALELLKEMKERG 374 (521)
Q Consensus 328 A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 374 (521)
+.++|..|...|+-.. ...|......+...|++.+|..+|+.-++.+
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3344444444333322 3333334444444444444444444444443
No 313
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=31.69 E-value=2.8e+02 Score=24.79 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=15.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 348 TTLINCFCRAGRVDEALELLKEMK 371 (521)
Q Consensus 348 ~~l~~~~~~~~~~~~A~~~~~~~~ 371 (521)
..++.-|...++.++|...++++.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~ 244 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELE 244 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHhccCCCHHHHHHHHHHcc
Confidence 455555666666666666666654
No 314
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=31.16 E-value=1.7e+02 Score=22.20 Aligned_cols=66 Identities=21% Similarity=0.329 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCc
Q 009977 345 IGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGK--IEEALGMLEKLWYDGIY 411 (521)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~ 411 (521)
.....++.-|...|+.++|...++++...... .......+..++-+.++ .+.+..++..+...++-
T Consensus 10 kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 10 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34567888899999999999999988532111 22334444445544322 44566777777666544
No 315
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.79 E-value=3.5e+02 Score=25.65 Aligned_cols=19 Identities=21% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHhcCCchHHHHHHHHh
Q 009977 103 DKLARYKKFEAVDAVLRQM 121 (521)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~ 121 (521)
-.+...+++++|.+.-..+
T Consensus 144 i~L~d~k~~~~~~~~~~~~ 162 (523)
T 4b4t_S 144 LFLWDSKELEQLVEFNRKV 162 (523)
T ss_dssp -------------------
T ss_pred HHHhccccHHHHHHHHHHH
Confidence 3445566677666655443
No 316
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=30.62 E-value=36 Score=20.96 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=16.2
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCH
Q 009977 251 NGRFREAIELFEEMVSKDQILPDA 274 (521)
Q Consensus 251 ~g~~~~A~~~~~~~~~~~~~~~~~ 274 (521)
.-+++.|...|.++...+.+||+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 456777777777776665566653
No 317
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=30.37 E-value=2.9e+02 Score=24.74 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKK 230 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 230 (521)
....++.-|...|+.++|...++++..
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~ 40 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA 40 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 457778888888888888888888753
No 318
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=29.79 E-value=2.8e+02 Score=24.23 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 009977 432 KAIELLRLMLCRGFLP--HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDE 509 (521)
Q Consensus 432 ~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 509 (521)
+.+++-.-+....+.| -.-++...+....+.+++..|..+-+++++.+ |+.. ..++|.+++..
T Consensus 179 R~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~--p~~~-------------~~~qArkil~~ 243 (320)
T 3mkr_B 179 RICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELG--PKPE-------------VAQQTRKILSA 243 (320)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTC--CCHH-------------HHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCHH-------------HHHHHHHHHHH
Confidence 3344444444445555 23345566777889999999999999999874 4432 23457777777
Q ss_pred HHHcCccCccC
Q 009977 510 LVIKESGTIQV 520 (521)
Q Consensus 510 m~~~~~~~~~v 520 (521)
..+++.+.+++
T Consensus 244 ce~~~~da~ei 254 (320)
T 3mkr_B 244 CEKNPTDAYQL 254 (320)
T ss_dssp HHHSCCBSSCC
T ss_pred HhcCCCCcccc
Confidence 77666555543
No 319
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=28.39 E-value=1.2e+02 Score=20.80 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=29.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHH-----HcCCCHHHHHHHHHHHHH
Q 009977 390 CREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFS-----CQKGELEKAIELLRLMLC 442 (521)
Q Consensus 390 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~ 442 (521)
...|++-+|.++++.+-.....+....|..+|... .+.|+. |..++.+...
T Consensus 12 fn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 12 WRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 34477777777777776654444445566655532 234555 6666665553
No 320
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=28.36 E-value=3.7e+02 Score=25.10 Aligned_cols=120 Identities=11% Similarity=0.085 Sum_probs=67.6
Q ss_pred HHHHHHH-hcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHc
Q 009977 64 AAISLIK-CEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSN 142 (521)
Q Consensus 64 ~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (521)
.++.... ...+++-|+++-.+. |++.-...|..-.+.+...|++++|.++--.... |+-.+..+...+-.+=..
T Consensus 333 ~ivpyi~~~l~n~~lA~~lA~R~----~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~ 407 (494)
T 1bpo_A 333 NIIPYITNVLQNPDLALRMAVRN----NLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQ 407 (494)
T ss_dssp THHHHHHHTTCCHHHHHHHHHHT----TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCC
T ss_pred cchhhhhhccCCHHHHHHHHHhc----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCC
Confidence 4454433 457888888876554 6666677788888899999999999998877654 445555555443333333
Q ss_pred cCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 009977 143 CSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLK 190 (521)
Q Consensus 143 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 190 (521)
.|+..-.+..|..+.+. .+.+..--..+.+.....|+.+....++.
T Consensus 408 pgq~splL~YF~~Ll~~--g~Ln~~ESlEl~r~vL~q~r~~llekWl~ 453 (494)
T 1bpo_A 408 PGQTSPLLQYFGILLDQ--GQLNKYESLELCRPVLQQGRKQLLEKWLK 453 (494)
T ss_dssp TTSCCHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcc--CccchHHhhHHhHHHHhccHHHHHHHHHh
Confidence 34444444444444421 12222222223444444555544444443
No 321
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=27.87 E-value=2.2e+02 Score=22.32 Aligned_cols=80 Identities=15% Similarity=0.025 Sum_probs=34.2
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHH
Q 009977 200 PNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNV 279 (521)
Q Consensus 200 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 279 (521)
++..+-...+.++.+.|+.+ +...+..+.. .++...-...+.++...++. ++...+..+.. .++...-..
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~----d~~~~vr~~ 157 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK----DEDGWVRQS 157 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT----CSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc----CCCHHHHHH
Confidence 45555555555555555532 2222223322 14444444445555554442 23333333332 124444444
Q ss_pred HHHHHHhCCC
Q 009977 280 LIDGFCRGGK 289 (521)
Q Consensus 280 l~~~~~~~~~ 289 (521)
.+.++.+.|.
T Consensus 158 A~~aL~~~~~ 167 (201)
T 3ltj_A 158 AADALGEIGG 167 (201)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHHHhCc
Confidence 4444444444
No 322
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.50 E-value=53 Score=19.64 Aligned_cols=19 Identities=11% Similarity=0.183 Sum_probs=10.6
Q ss_pred HHHccCc--HHHHHHHHHHHH
Q 009977 493 LICRGRK--LLFAFELLDELV 511 (521)
Q Consensus 493 ~~~~~g~--~~~A~~~~~~m~ 511 (521)
++.+.|. .+.|++++.+|-
T Consensus 29 Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 29 ALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp HHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHhCcccHHHHHHHHHHhc
Confidence 3344444 666666666653
No 323
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.37 E-value=1.8e+02 Score=21.82 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 009977 292 RAKKIMEFMK 301 (521)
Q Consensus 292 ~a~~~~~~~~ 301 (521)
.|.++++.+.
T Consensus 39 sa~ei~~~l~ 48 (145)
T 2fe3_A 39 TADDIYKALE 48 (145)
T ss_dssp CHHHHHHHHG
T ss_pred CHHHHHHHHH
Confidence 3333333333
No 324
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=26.69 E-value=2.8e+02 Score=23.21 Aligned_cols=9 Identities=11% Similarity=-0.068 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 009977 468 AAIALFGLV 476 (521)
Q Consensus 468 a~~~~~~~~ 476 (521)
+...+.++.
T Consensus 253 ~~~~L~~~l 261 (280)
T 1oyz_A 253 LLPVLDTML 261 (280)
T ss_dssp GHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 333333333
No 325
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=26.55 E-value=2.9e+02 Score=23.19 Aligned_cols=177 Identities=9% Similarity=-0.057 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCc----HHHHHHHHHhhccccCCCCCHhHH
Q 009977 94 NNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSL----HERVLEMFHKIHPITREKPSLKAI 169 (521)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~a~~~~~~~~~~~~~~~~~~~~ 169 (521)
|...-...+..+...+. ..+...+..+... ++.......+.++.+.|. ....+.++.... ...++..+-
T Consensus 36 ~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~d---~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~---~~d~~~~vr 108 (280)
T 1oyz_A 36 NSLKRISSARVLQLRGG-QDAVRLAIEFCSD---KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMA---LNDKSACVR 108 (280)
T ss_dssp SHHHHHHHHHHHHHHCC-HHHHHHHHHHHTC---SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHH---HHCSCHHHH
T ss_pred CHHHHHHHHHHHHccCC-chHHHHHHHHHcC---CCHHHHHHHHHHHHHhccccccchHHHHHHHHHH---hcCCCHHHH
Confidence 44444445555555553 2344444444332 233444444455554442 222223332110 013344444
Q ss_pred HHHHHHHHhcCC-----HHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009977 170 STCLNLLIESNQ-----VDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTL 244 (521)
Q Consensus 170 ~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 244 (521)
...+.++...+. ...+...+..+.. .++..+-...+.++...|+.+ +...+..+... ++...-...
T Consensus 109 ~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~----d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~d----~~~~vr~~a 179 (280)
T 1oyz_A 109 ATAIESTAQRCKKNPIYSPKIVEQSQITAF----DKSTNVRRATAFAISVINDKA-TIPLLINLLKD----PNGDVRNWA 179 (280)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHTT----CSCHHHHHHHHHHHHTC---C-CHHHHHHHHTC----SSHHHHHHH
T ss_pred HHHHHHHHHHhccCCcccHHHHHHHHHHhh----CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHcC----CCHHHHHHH
Confidence 444444444331 2333333333322 245555555555666555532 33333333321 343333334
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCH
Q 009977 245 IDGLCKNG-RFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKV 290 (521)
Q Consensus 245 ~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 290 (521)
+.++...| ....+...+..+.. .++...-...+.++.+.|+.
T Consensus 180 ~~aL~~~~~~~~~~~~~L~~~l~----d~~~~vR~~A~~aL~~~~~~ 222 (280)
T 1oyz_A 180 AFAININKYDNSDIRDCFVEMLQ----DKNEEVRIEAIIGLSYRKDK 222 (280)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHTT----CSCHHHHHHHHHHHHHTTCG
T ss_pred HHHHHhhccCcHHHHHHHHHHhc----CCCHHHHHHHHHHHHHhCCH
Confidence 44444433 12334444444432 13344444445555555543
No 326
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=25.83 E-value=1.2e+02 Score=20.69 Aligned_cols=22 Identities=27% Similarity=0.117 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 009977 453 NELLVRLCKAGMAEDAAIALFG 474 (521)
Q Consensus 453 ~~l~~~~~~~g~~~~a~~~~~~ 474 (521)
......+.+.|++++|+...++
T Consensus 19 ~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 19 SRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHhcCCHHHHHHHHHH
Confidence 3445566666777776666543
No 327
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=25.65 E-value=93 Score=19.61 Aligned_cols=44 Identities=9% Similarity=0.108 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHc
Q 009977 98 YATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSN 142 (521)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (521)
++.+++.++...-.+.+.-.+++..+.| ..+...|..-.+..++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4555556665555666666666666665 4555555555555444
No 328
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=25.63 E-value=2e+02 Score=21.06 Aligned_cols=69 Identities=17% Similarity=0.228 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCCCHH
Q 009977 381 TFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGE--LEKAIELLRLMLCRGFLPHYA 450 (521)
Q Consensus 381 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~ 450 (521)
....++.-|...|+.++|...++++...... .......+..++-+.++ .+....++..+...|+-+...
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3556788888899999999999887522111 22333444455555432 456777777777666555443
No 329
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=25.40 E-value=58 Score=26.01 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=9.3
Q ss_pred HHHccCcHHHHHHHHHHHHHcC
Q 009977 493 LICRGRKLLFAFELLDELVIKE 514 (521)
Q Consensus 493 ~~~~~g~~~~A~~~~~~m~~~~ 514 (521)
.|.+.|.+++|.++|++..+++
T Consensus 126 VCiekg~Fk~A~eiLkr~f~~~ 147 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERIFGDP 147 (211)
T ss_dssp HHHHTTCHHHHHHHHHHHC---
T ss_pred HHHHccchHHHHHHHHHHhcCC
Confidence 3444555555555555544443
No 330
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=24.98 E-value=2e+02 Score=23.95 Aligned_cols=46 Identities=9% Similarity=-0.040 Sum_probs=20.6
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHH
Q 009977 426 QKGELEKAIELLRLMLCRGFLPHYAT--SNELLVRLCKAGMAEDAAIA 471 (521)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~ 471 (521)
..++.....++++.+.+.|..++... -...+...++.|..+-+..+
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 238 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 34444344455556666665543211 01123344456666544443
No 331
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.91 E-value=1.6e+02 Score=22.13 Aligned_cols=10 Identities=10% Similarity=0.252 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 009977 292 RAKKIMEFMK 301 (521)
Q Consensus 292 ~a~~~~~~~~ 301 (521)
.|.++++.+.
T Consensus 35 ta~ei~~~l~ 44 (145)
T 3eyy_A 35 TPDDILGEVR 44 (145)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 3333333333
No 332
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.67 E-value=4.3e+02 Score=24.66 Aligned_cols=47 Identities=4% Similarity=-0.069 Sum_probs=29.6
Q ss_pred cCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhc
Q 009977 108 YKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIH 157 (521)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 157 (521)
..+.+-|.++-.+ .|.+-.+..|..-.+.+...|++++|.++--..+
T Consensus 342 l~n~~lA~~lA~R---~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP 388 (494)
T 1bpo_A 342 LQNPDLALRMAVR---NNLAGAEELFARKFNALFAQGNYSEAAKVAANAP 388 (494)
T ss_dssp TCCHHHHHHHHHH---TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG
T ss_pred cCCHHHHHHHHHh---cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc
Confidence 3555555554433 3555566677777777777777777777765554
No 333
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.01 E-value=1.3e+02 Score=25.04 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=13.3
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCC
Q 009977 284 FCRGGKVDRAKKIMEFMKNNGCNPN 308 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~~~~~~ 308 (521)
.++.|+.+....+++.+.+.|...+
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 3455666665556665555544433
No 334
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=23.31 E-value=1.5e+02 Score=24.70 Aligned_cols=48 Identities=15% Similarity=0.050 Sum_probs=21.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCcHHHHHHHH
Q 009977 460 CKAGMAEDAAIALFGLVEMGFKPESDS--WALLVELICRGRKLLFAFELL 507 (521)
Q Consensus 460 ~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~ 507 (521)
...|.......+++.+.+.|..++... -...+....+.|+.+-+..++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 345554344455555666665544311 112223334556654443333
No 335
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.29 E-value=3.7e+02 Score=23.37 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCCCHH
Q 009977 382 FNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGE--LEKAIELLRLMLCRGFLPHYA 450 (521)
Q Consensus 382 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~ 450 (521)
...++.-|...|+.++|...++++...... .......+..+.-+.++ .+....++..+.+.|+-+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 356677777888888888888877422111 12233344444444333 345666777776656554433
No 336
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.55 E-value=2.3e+02 Score=20.79 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=33.3
Q ss_pred HHHHCCCccCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 009977 404 KLWYDGIYLNKASYRIVLNFSCQKG-ELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMA 465 (521)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 465 (521)
.+.+.|.+++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3445566654432 23344444444 5566777777777655455666655555666666644
No 337
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.43 E-value=3e+02 Score=22.07 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=13.6
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCC
Q 009977 286 RGGKVDRAKKIMEFMKNNGCNPN 308 (521)
Q Consensus 286 ~~~~~~~a~~~~~~~~~~~~~~~ 308 (521)
+..+.+.|+-++-+|++.| .|.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~ 47 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLA 47 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHH
T ss_pred hcCCHHHHHHHHHHHHHcC-CHH
Confidence 3456666666666666666 443
No 338
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=22.04 E-value=65 Score=19.84 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 009977 255 REAIELFEEMVSKDQILPDALTYNVLIDGF 284 (521)
Q Consensus 255 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 284 (521)
++|.+.|.+|++..++.|+ .+|.-.+...
T Consensus 3 eEae~aF~~lL~~~~V~s~-wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDST-WSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSS-CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCC-CcHHHHHHHh
Confidence 3444555555444443333 2344444433
No 339
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=21.97 E-value=3.2e+02 Score=24.52 Aligned_cols=75 Identities=16% Similarity=0.149 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCccCHHHHHHHH
Q 009977 346 GYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGK--IEEALGMLEKLWYDGIYLNKASYRIVL 421 (521)
Q Consensus 346 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 421 (521)
....++.-|...|+.++|...++++.... .........++......++ .+.+-.++..+...++-+.......+.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~-~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~ 90 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPK-HFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFL 90 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCG-GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCch-hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 45677888899999999999998875311 0012233333433333332 244556666666655443333333333
No 340
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=21.26 E-value=1.4e+02 Score=23.34 Aligned_cols=54 Identities=15% Similarity=0.085 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHH
Q 009977 448 HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLF 502 (521)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 502 (521)
....++.++..++...-.++++.++.+++..| ..+..+|..-++.+++..-+..
T Consensus 110 ~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaReQF~~r 163 (174)
T 2p22_A 110 KTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQQFLVR 163 (174)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666777777777777666 4566666666666665544433
No 341
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.88 E-value=5e+02 Score=24.00 Aligned_cols=38 Identities=18% Similarity=0.074 Sum_probs=20.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 009977 356 RAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREG 393 (521)
Q Consensus 356 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 393 (521)
+..+.+.|+..+.+|.+.|..|....-..+..+.-..|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 34566667777777766665544333333344433333
No 342
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.83 E-value=3.4e+02 Score=22.09 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=15.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 009977 208 LIKHHCKRGTLESAFEVLKEMKKS 231 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~~~~~ 231 (521)
.+..|.+.|.+++|.+++++....
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHhcchHHHHHHHHHHhcC
Confidence 345666777777777777776553
No 343
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.75 E-value=1.8e+02 Score=20.09 Aligned_cols=33 Identities=24% Similarity=0.108 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc
Q 009977 467 DAAIALFGLVEMGFKPESDSWALLVELICRGRK 499 (521)
Q Consensus 467 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 499 (521)
.|..+.+++...|+.|+..+...+++.|...+-
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l 59 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ 59 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 356666777788889999888888888876654
No 344
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.73 E-value=3.8e+02 Score=23.67 Aligned_cols=149 Identities=10% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009977 169 ISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGL 248 (521)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 248 (521)
...++.-|...|+.++|...++.+... ...+...........-.+....+.+..++..+.+ ....+-..+..++
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p-~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~-----~~~is~~~~~~Gf 87 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASP-SLLFIFVRHGVESTLERSAIAREHMGQLLHQLLC-----AGHLSTAQYYQGL 87 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCG-GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-----TTSSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH-----CCCCCHHHHHHHH
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC
Q 009977 249 CKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKV----DRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGK 324 (521)
Q Consensus 249 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 324 (521)
.+ +++.+.+..--.|....+...+-+.+-.... +-...+.+.+...| ........++..+.+...
T Consensus 88 ~~---------~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g--~~~~fl~~vl~~l~~~~g 156 (339)
T 1ug3_A 88 YE---------ILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLG--KAASLLLEILGLLCKSMG 156 (339)
T ss_dssp HH---------HHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHT--CHHHHHHHHHHHHHHHHC
T ss_pred HH---------HHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHcC
Q ss_pred HHHHHHHHHH
Q 009977 325 LQEAKEVFDE 334 (521)
Q Consensus 325 ~~~A~~~~~~ 334 (521)
.+.+.++|.+
T Consensus 157 ~~~l~~~~~~ 166 (339)
T 1ug3_A 157 PKKVGTLWRE 166 (339)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 345
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.01 E-value=2.6e+02 Score=21.03 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 009977 362 EALELLKEMKERGCKADIVTFNIILGGLCREG 393 (521)
Q Consensus 362 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 393 (521)
.|.++++.+.+.+...+..|...-+..+...|
T Consensus 35 sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 35 SAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34444444443333333333333333333333
Done!