BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009978
(521 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter
From E.Coli
Length = 451
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 98/254 (38%), Gaps = 24/254 (9%)
Query: 123 VPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWS---LATF 179
+P + G+SR G S Y S G++ D ++ + G+ L + L
Sbjct: 51 MPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG 110
Query: 180 LTPWAADTSLLALLAMRAVVGLAEGVALPAMNNMVARWFPQTERARAVAIAMGGFTSGNA 239
PWA +S+ + + + G +G+ P + W+ Q ER V++ G
Sbjct: 111 FVPWAT-SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG 169
Query: 240 IGLVLSPILMS-----QAGIFGPFVIFGLSGFLWVLVWLSATSSTPDRH--PQISKYELE 292
I +L + M+ A ++ P L L + TP P I +Y+ +
Sbjct: 170 IPPLLFLLGMAWFNDWHAALYMP----AFCAILVALFAFAMMRDTPQSCGLPPIEEYKND 225
Query: 293 Y--ILREKQKPLLMGNKHKPATVIPPFRRLLSKMPTWSIIVANAMHSWGFFVILSWMPIY 350
Y EK + L + V+P +LL W I +AN + IL W P Y
Sbjct: 226 YPDDYNEKAEQELTAKQIFMQYVLP--NKLL-----WYIAIANVFVYLLRYGILDWSPTY 278
Query: 351 FNFVYHIDLRQASW 364
V H L ++SW
Sbjct: 279 LKEVKHFALDKSSW 292
>pdb|3RZI|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Cocrystallized And Complexed With Phenylalanine And
Tryptophan
pdb|3RZI|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Cocrystallized And Complexed With Phenylalanine And
Tryptophan
pdb|2YPO|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Phenylalanine Bound In Only One Site
pdb|2YPO|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Phenylalanine Bound In Only One Site
pdb|2YPP|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase In
Complex With 3 Tyrosine Molecules
pdb|2YPP|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase In
Complex With 3 Tyrosine Molecules
pdb|2YPQ|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Tryptophan And Tyrosine Bound
pdb|2YPQ|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Tryptophan And Tyrosine Bound
Length = 462
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 12/159 (7%)
Query: 99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLV 158
++V A A A N R + S + L L H W+R F + + L + I G
Sbjct: 168 RLVRAYANASAAMNLVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGL-- 225
Query: 159 DYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEG-VALPAMNNMVARW 217
+ + A GVA +L T A L L RA++ L++G P + ++ A
Sbjct: 226 -----RFMSACGVADRNLQT--AEIYASHEALVLDYERAMLRLSDGDDGEPQLFDLSAHT 278
Query: 218 FPQTERARAVAIAMGGFTS--GNAIGLVLSPILMSQAGI 254
ER R + A F N +G+ L P + + +
Sbjct: 279 VWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAV 317
>pdb|2W19|A Chain A, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis
pdb|2W19|B Chain B, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis
pdb|2W1A|A Chain A, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis With Bound Tsa
pdb|2W1A|B Chain B, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis With Bound Tsa
Length = 472
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 12/159 (7%)
Query: 99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLV 158
++V A A A N R + S + L L H W+R F + + L + I G
Sbjct: 178 RLVRAYANASAAMNLVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGL-- 235
Query: 159 DYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEG-VALPAMNNMVARW 217
+ + A GVA +L T A L L RA++ L++G P + ++ A
Sbjct: 236 -----RFMSACGVADRNLQT--AEIYASHEALVLDYERAMLRLSDGDDGEPQLFDLSAHT 288
Query: 218 FPQTERARAVAIAMGGFTS--GNAIGLVLSPILMSQAGI 254
ER R + A F N +G+ L P + + +
Sbjct: 289 VWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAV 327
>pdb|3KGF|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine And Tryptophan
pdb|3KGF|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine And Tryptophan
pdb|3NUD|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine
pdb|3NUD|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine
pdb|3NUE|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Tryptophan
pdb|3NUE|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Tryptophan
pdb|3NV8|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase In Complex With Phosphoenol
Pyruvate And Manganese (Thesit-Free)
pdb|3NV8|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase In Complex With Phosphoenol
Pyruvate And Manganese (Thesit-Free)
pdb|3PFP|A Chain A, Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate
Synthase From Mycobacterium Tuberculosis In Complex With
An Active Site Inhibitor
pdb|3PFP|B Chain B, Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate
Synthase From Mycobacterium Tuberculosis In Complex With
An Active Site Inhibitor
Length = 464
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 12/159 (7%)
Query: 99 KVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRSFSGIVQSSFLWGYLVSPIAGGTLV 158
++V A A A N R + S + L L H W+R F + + L + I G
Sbjct: 170 RLVRAYANASAAMNLVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGL-- 227
Query: 159 DYYGGKIIMAWGVALWSLATFLTPWAADTSLLALLAMRAVVGLAEG-VALPAMNNMVARW 217
+ + A GVA +L T A L L RA++ L++G P + ++ A
Sbjct: 228 -----RFMSACGVADRNLQT--AEIYASHEALVLDYERAMLRLSDGDDGEPQLFDLSAHT 280
Query: 218 FPQTERARAVAIAMGGFTS--GNAIGLVLSPILMSQAGI 254
ER R + A F N +G+ L P + + +
Sbjct: 281 VWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAV 319
>pdb|3O7Q|A Chain A, Crystal Structure Of A Major Facilitator Superfamily (Mfs)
Transporter, Fucp, In The Outward Conformation
Length = 438
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 136 SGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTS-----LL 190
+G++QS+F +GY + PI G L+ K + G+ L++L L AA+ L+
Sbjct: 63 AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLV 122
Query: 191 ALLAMRAVVGLAEGVALP 208
L + A +G E A P
Sbjct: 123 GLFIIAAGLGCLETAANP 140
>pdb|3O7P|A Chain A, Crystal Structure Of The E.Coli Fucose:proton Symporter,
Fucp (N162a)
Length = 438
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 136 SGIVQSSFLWGYLVSPIAGGTLVDYYGGKIIMAWGVALWSLATFLTPWAADTS-----LL 190
+G++QS+F +GY + PI G L+ K + G+ L++L L AA+ L+
Sbjct: 63 AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLV 122
Query: 191 ALLAMRAVVGLAEGVALP 208
L + A +G E A P
Sbjct: 123 GLFIIAAGLGCLETAANP 140
>pdb|2WJ8|A Chain A, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|B Chain B, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|C Chain C, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|D Chain D, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|E Chain E, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|F Chain F, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|G Chain G, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|H Chain H, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|I Chain I, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|J Chain J, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|K Chain K, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|L Chain L, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|M Chain M, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|N Chain N, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|O Chain O, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|P Chain P, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|Q Chain Q, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|R Chain R, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|S Chain S, Respiratory Syncitial Virus Ribonucleoprotein
pdb|2WJ8|T Chain T, Respiratory Syncitial Virus Ribonucleoprotein
Length = 391
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 137 GIVQSSFLWGYLVSPIAGGTLVDYYG-GKIIMAWGVALWSLATFLTPWAA 185
GI QSS G V I G ++ YG G++++ WGV S+ + A+
Sbjct: 227 GIAQSSTRGGSRVEGIFAGLFMNAYGAGQVMLRWGVLAKSVKNIMLGHAS 276
>pdb|2YHM|A Chain A, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|B Chain B, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|C Chain C, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|D Chain D, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|E Chain E, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|F Chain F, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|G Chain G, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|H Chain H, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|I Chain I, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHM|J Chain J, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P212121 Crystal Form
pdb|2YHP|A Chain A, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|B Chain B, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|C Chain C, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|D Chain D, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|E Chain E, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|F Chain F, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|G Chain G, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|H Chain H, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|I Chain I, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|J Chain J, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|L Chain L, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|N Chain N, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|O Chain O, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|P Chain P, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|Q Chain Q, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|R Chain R, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|S Chain S, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|T Chain T, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|U Chain U, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHP|V Chain V, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|A Chain A, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|B Chain B, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|C Chain C, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|D Chain D, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|E Chain E, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|F Chain F, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|G Chain G, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|H Chain H, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|I Chain I, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|J Chain J, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|K Chain K, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|L Chain L, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|M Chain M, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|N Chain N, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|O Chain O, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|P Chain P, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|Q Chain Q, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|W Chain W, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|Y Chain Y, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
pdb|2YHQ|Z Chain Z, Structure Of Respiratory Syncytial Virus Nucleocapsid
Protein, P1 Crystal Form
Length = 375
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 137 GIVQSSFLWGYLVSPIAGGTLVDYYG-GKIIMAWGVALWSLATFLTPWAA 185
GI QSS G V I G ++ YG G++++ WGV S+ + A+
Sbjct: 227 GIAQSSTRGGSRVEGIFAGLFMNAYGAGQVMLRWGVLAKSVKNIMLGHAS 276
>pdb|3FI7|A Chain A, Crystal Structure Of The Autolysin Auto (Lmo1076) From
Listeria Monocytogenes, Catalytic Domain
Length = 183
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 75 FDLAPNEDEALAPNFLEFITSERVKVVSMLALALALCNADRVVMSVAIVPLSLAHGWSRS 134
F L N D+A+A T ++ + S+ A+ LC + SV I +L W RS
Sbjct: 10 FSLEQNRDDAMAA-LASTPTFQQTFINSISTQAMDLCKKYNLYPSVMIAQAALESNWGRS 68
Query: 135 FSGIVQSSFLWG 146
G + L+G
Sbjct: 69 ELGKAPNYNLFG 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,145,556
Number of Sequences: 62578
Number of extensions: 549437
Number of successful extensions: 1726
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1719
Number of HSP's gapped (non-prelim): 18
length of query: 521
length of database: 14,973,337
effective HSP length: 103
effective length of query: 418
effective length of database: 8,527,803
effective search space: 3564621654
effective search space used: 3564621654
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)