BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009981
(521 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 278 bits (710), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 146/382 (38%), Positives = 214/382 (56%), Gaps = 25/382 (6%)
Query: 128 PGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAY 187
P YDW Y +L L CGLK++A+++FHQCG GD ++P+PQW+L+ DK+PD+ Y
Sbjct: 65 PKQYDWSAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFY 124
Query: 188 SDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL--GAIITKLM---- 241
++R G RN EY+SLG D + +GR+ ++ Y DFM +FRD L G I+ +
Sbjct: 125 TNRAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGDIVDIEVGCGA 184
Query: 242 ------------WSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQD 289
W +GEFQCYDKYM+A ++ G +W G GA
Sbjct: 185 AGELRYPSYPETQGWVFPGIGEFQCYDKYMVADWKEAVKQAGNADWEMPGK-GAGTYNDT 243
Query: 290 PEHTEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIH 349
P+ TEFFR NG + T G FFL WYS L++HG+++ EA +F G RVN +AKV GIH
Sbjct: 244 PDKTEFFRP-NGTYKTDMGKFFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVSGIH 302
Query: 350 WHYGTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSP 409
W Y SH +ELTAG+YN + RDG+ PIAR+ R+ TL +C EMRD E+ S+P
Sbjct: 303 WWYNHVSHAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRD-SEQPAEAKSAP 361
Query: 410 EGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYSEGLEKPS----FSFNFL 465
+ ++Q+L + I + GEN+ D A+ Q++ + L P +L
Sbjct: 362 QELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLKLRPNGVNLNGPPKLKMSGLTYL 421
Query: 466 RMDKNMFEYHNWVRFTRFVRQL 487
R+ ++ + N+ F +FV+++
Sbjct: 422 RLSDDLLQTDNFELFKKFVKKM 443
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase
Length = 500
Score = 265 bits (676), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 148/435 (34%), Positives = 221/435 (50%), Gaps = 26/435 (5%)
Query: 78 VFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDWRGYF 137
V+V LP D+ + + ++ + + L P YDW Y
Sbjct: 8 VYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYK 67
Query: 138 DLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNME 197
L L GLK++A+++FHQCG GD +P+PQWV + +DPD+ Y+D G RN+E
Sbjct: 68 QLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTRNIE 127
Query: 198 YISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA-IITKL---------------- 240
Y++LG D P+ GRS +Q Y D+M +FR+ + L A +I +
Sbjct: 128 YLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGVIVDIEVGLGPAGELRYPSYP 187
Query: 241 -MWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEFFRTD 299
W +GEF CYDKY+ A A A +G EW P A PE T+FFR D
Sbjct: 188 QSHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEW--EFPNDAGQYNDTPERTQFFR-D 244
Query: 300 NGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTPSHPS 359
NG + + G FFL WYS L+ HG+RI EA +F G +V + K+ G+HW Y PSH +
Sbjct: 245 NGTYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKIAGVHWWYKVPSHAA 304
Query: 360 ELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLA 419
ELTAGYYN RDG+ IAR+ R+ ++ +C EMRD E+ + S+PE ++Q+L A
Sbjct: 305 ELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRD-SEQPPDAMSAPEELVQQVLSA 363
Query: 420 ARICEIPLEGENSATSLDDAAFQQVIKMSKFYSEGLEKPS----FSFNFLRMDKNMFEYH 475
+ + EN+ D A+ +++ ++ + P F F +LR+ + E
Sbjct: 364 GWREGLNVSCENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLVEGQ 423
Query: 476 NWVRFTRFVRQLSGS 490
N+V F FV ++ +
Sbjct: 424 NYVNFKTFVDRMHAN 438
>pdb|2XFF|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Acarbose
pdb|2XFR|A Chain A, Crystal Structure Of Barley Beta-Amylase At Atomic
Resolution
pdb|2XFY|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Alpha-Cyclodextrin
pdb|2XG9|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
4-O- Alpha-D-Glucopyranosylmoranoline
pdb|2XGB|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
2,3- Epoxypropyl-Alpha-D-Glucopyranoside
pdb|2XGI|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
3,4- Epoxybutyl Alpha-D-Glucopyranoside
Length = 535
Score = 264 bits (675), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 148/435 (34%), Positives = 220/435 (50%), Gaps = 26/435 (5%)
Query: 78 VFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDWRGYF 137
V+V LP D+ + + ++ + + L P YDW Y
Sbjct: 12 VYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYK 71
Query: 138 DLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNME 197
L L GLK++A+++FHQCG GD +P+PQWV + +DPD+ Y+D G RN+E
Sbjct: 72 QLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTRNIE 131
Query: 198 YISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA-IITKL---------------- 240
Y++LG D P+ GRS +Q Y D+M +FR+ + L A +I +
Sbjct: 132 YLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKEFLDAGVIVDIEVGLGPAGEMRYPSYP 191
Query: 241 -MWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEFFRTD 299
W +GEF CYDKY+ A A A +G EW +G N PE T+FFR D
Sbjct: 192 QSHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEWEFPNDVGQYN--DTPERTQFFR-D 248
Query: 300 NGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTPSHPS 359
NG + + G FFL WYS L+ HG+RI EA +F G +V + K+ GIHW Y PSH +
Sbjct: 249 NGTYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPSHAA 308
Query: 360 ELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLA 419
ELTAGYYN RDG+ IAR+ R+ ++ +C EMRD E+ S+PE ++Q+L A
Sbjct: 309 ELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRD-SEQSSQAMSAPEELVQQVLSA 367
Query: 420 ARICEIPLEGENSATSLDDAAFQQVIKMSKFYSEGLEKPS----FSFNFLRMDKNMFEYH 475
+ + EN+ D A+ +++ ++ + P F F +LR+ + E
Sbjct: 368 GWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLVEGQ 427
Query: 476 NWVRFTRFVRQLSGS 490
N+ F FV ++ +
Sbjct: 428 NYANFKTFVDRMHAN 442
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 257 bits (656), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 153/445 (34%), Positives = 225/445 (50%), Gaps = 26/445 (5%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L+ L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL--GAIIT---------KLMW 242
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L G II +L +
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 243 -------SWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEF 295
W +GEFQCYDKY+ A A G EW G N + PE T F
Sbjct: 190 PSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PESTGF 247
Query: 296 FRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTP 355
F++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 248 FKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGXKVKLAIKVSGIHWWYKVE 306
Query: 356 SHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQ 415
+H +ELTAGYYN + RDG+ PIAR+ R+ L SC EMRD E+ + S P+ ++Q
Sbjct: 307 NHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFSCLEMRD-SEQPSDAKSGPQELVQQ 365
Query: 416 LLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMDKNM 471
+L +I + GEN+ D A+ Q+I ++ + G K S F +LR+ ++
Sbjct: 366 VLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 472 FEYHNWVRFTRFVRQLSGSSIFRAK 496
+ N+ F +FV ++ + A
Sbjct: 426 LQKSNFNIFKKFVLKMHADQDYCAN 450
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t)
With Increased Ph Optimum
Length = 495
Score = 256 bits (655), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 151/445 (33%), Positives = 223/445 (50%), Gaps = 26/445 (5%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L+ L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL--GAIITKLM---------- 241
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L G II +
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 242 ------WSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEF 295
W +GEFQCYDKY+ A A G EW G N + PE T F
Sbjct: 190 PSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PESTGF 247
Query: 296 FRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTP 355
F++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 248 FKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVE 306
Query: 356 SHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQ 415
+H +ELTAGYYN + RDG+ PIAR+ R+ L +C EMRD E+ + S P+ ++Q
Sbjct: 307 NHAAELTAGYYNLNDRDGYRPIARMLSRHHAILTFTCLEMRD-SEQPSDAKSGPQELVQQ 365
Query: 416 LLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMDKNM 471
+L +I + GEN+ D A+ Q+I ++ + G K S F +LR+ ++
Sbjct: 366 VLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 472 FEYHNWVRFTRFVRQLSGSSIFRAK 496
+ N+ F +FV ++ + A
Sbjct: 426 LQKSNFNIFKKFVLKMHADQDYCAN 450
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 256 bits (655), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 153/445 (34%), Positives = 224/445 (50%), Gaps = 26/445 (5%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL--GAIIT---------KLMW 242
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L G II +L +
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 243 -------SWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEF 295
W +GEFQCYDKY+ A A G EW G N + PE T F
Sbjct: 190 PSYPQSQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PESTGF 247
Query: 296 FRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTP 355
F++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 248 FKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVE 306
Query: 356 SHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQ 415
+H +ELTAGYYN + RDG+ PIAR+ R+ L +C EMRD E+ + S P+ ++Q
Sbjct: 307 NHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD-SEQPSDAKSGPQELVQQ 365
Query: 416 LLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMDKNM 471
+L +I + GEN+ D A+ Q+I +K + G K S F +LR+ ++
Sbjct: 366 VLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 472 FEYHNWVRFTRFVRQLSGSSIFRAK 496
+ N+ F +FV ++ + A
Sbjct: 426 LQKSNFNIFKKFVLKMHADQDYCAN 450
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase
Determined At 3.0 Angstroms Resolution: Preliminary
Chain Tracing Of The Complex With Alpha-Cyclodextrin
Length = 491
Score = 256 bits (654), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 153/445 (34%), Positives = 224/445 (50%), Gaps = 26/445 (5%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 6 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 65
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 66 RAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 125
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL--GAIIT---------KLMW 242
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L G II +L +
Sbjct: 126 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 185
Query: 243 -------SWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEF 295
W +GEFQCYDKY+ A A G EW G N + PE T F
Sbjct: 186 PSYPQSQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PESTGF 243
Query: 296 FRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTP 355
F++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 244 FKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVE 302
Query: 356 SHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQ 415
+H +ELTAGYYN + RDG+ PIAR+ R+ L +C EMRD E+ + S P+ ++Q
Sbjct: 303 NHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD-SEQPSDAKSGPQELVQQ 361
Query: 416 LLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMDKNM 471
+L +I + GEN+ D A+ Q+I +K + G K S F +LR+ ++
Sbjct: 362 VLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDL 421
Query: 472 FEYHNWVRFTRFVRQLSGSSIFRAK 496
+ N+ F +FV ++ + A
Sbjct: 422 LQKSNFNIFKKFVLKMHADQDYCAN 446
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 5.4
pdb|1Q6F|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 7.1
Length = 495
Score = 256 bits (653), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 151/445 (33%), Positives = 223/445 (50%), Gaps = 26/445 (5%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L+ L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL--GAIITKLM---------- 241
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L G II +
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIYVGLGPAGELRY 189
Query: 242 ------WSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEF 295
W +GEFQCYDKY+ A A G EW G N + PE T F
Sbjct: 190 PSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PESTGF 247
Query: 296 FRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTP 355
F++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 248 FKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVE 306
Query: 356 SHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQ 415
+H +ELTAGYYN + RDG+ PIAR+ R+ L +C EMRD E+ + S P+ ++Q
Sbjct: 307 NHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD-SEQPSDAKSGPQELVQQ 365
Query: 416 LLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMDKNM 471
+L +I + GEN+ D A+ Q+I ++ + G K S F +LR+ ++
Sbjct: 366 VLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 472 FEYHNWVRFTRFVRQLSGSSIFRAK 496
+ N+ F +FV ++ + A
Sbjct: 426 LQKSNFNIFKKFVLKMHADQDYCAN 450
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 256 bits (653), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 152/445 (34%), Positives = 225/445 (50%), Gaps = 26/445 (5%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L+ L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL--GAIIT---------KLMW 242
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L G II +L +
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGQLRY 189
Query: 243 -------SWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEF 295
W +GEFQCYDKY+ A A G EW G N + PE T F
Sbjct: 190 PSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PESTGF 247
Query: 296 FRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTP 355
F++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 248 FKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVE 306
Query: 356 SHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQ 415
+H +ELTAGYYN + RDG+ PIAR+ R+ L +C EMRD E+ + S P+ ++Q
Sbjct: 307 NHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD-SEQPSDAKSGPQELVQQ 365
Query: 416 LLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMDKNM 471
+L +I + GEN+ D A+ Q+I ++ + G K S F +LR+ ++
Sbjct: 366 VLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 472 FEYHNWVRFTRFVRQLSGSSIFRAK 496
+ N+ F +FV ++ + A
Sbjct: 426 LQKSNFNIFKKFVLKMHADQDYCAN 450
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t)
With Increased Ph Optimum
Length = 495
Score = 256 bits (653), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 152/445 (34%), Positives = 225/445 (50%), Gaps = 26/445 (5%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVTVDVWWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L+ L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL--GAIIT---------KLMW 242
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L G II +L +
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 243 -------SWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEF 295
W +GEFQCYDKY+ A A G EW G N + PE T F
Sbjct: 190 PSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PESTGF 247
Query: 296 FRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTP 355
F++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 248 FKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVE 306
Query: 356 SHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQ 415
+H +ELTAGYYN + RDG+ PIAR+ R+ L +C EMRD E+ + S P+ ++Q
Sbjct: 307 NHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD-SEQPSDAKSGPQELVQQ 365
Query: 416 LLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMDKNM 471
+L +I + GEN+ D A+ Q+I ++ + G K S F +LR+ ++
Sbjct: 366 VLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 472 FEYHNWVRFTRFVRQLSGSSIFRAK 496
+ N+ F +FV ++ + A
Sbjct: 426 LQKSNFNIFKKFVLKMHADQDYCAN 450
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta- Amylase
Length = 495
Score = 255 bits (652), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 151/445 (33%), Positives = 223/445 (50%), Gaps = 26/445 (5%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L+ L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL--GAIITKLM---------- 241
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L G II +
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 242 ------WSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEF 295
W +GEFQCYDKY+ A A G EW G N + PE T F
Sbjct: 190 PSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PESTGF 247
Query: 296 FRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTP 355
F++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 248 FKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVE 306
Query: 356 SHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQ 415
+H +ELTAGYYN + RDG+ PIAR+ R+ L +C EMRD E+ + S P+ ++Q
Sbjct: 307 NHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFACLEMRD-SEQPSDAKSGPQELVQQ 365
Query: 416 LLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMDKNM 471
+L +I + GEN+ D A+ Q+I ++ + G K S F +LR+ ++
Sbjct: 366 VLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 472 FEYHNWVRFTRFVRQLSGSSIFRAK 496
+ N+ F +FV ++ + A
Sbjct: 426 LQKSNFNIFKKFVLKMHADQDYCAN 450
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With
Maltose
pdb|1WDP|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
pdb|1BFN|A Chain A, Beta-AmylaseBETA-Cyclodextrin Complex
Length = 495
Score = 255 bits (652), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 151/445 (33%), Positives = 223/445 (50%), Gaps = 26/445 (5%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L+ L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL--GAIITKLM---------- 241
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L G II +
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 242 ------WSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEF 295
W +GEFQCYDKY+ A A G EW G N + PE T F
Sbjct: 190 PSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PESTGF 247
Query: 296 FRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTP 355
F++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 248 FKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVE 306
Query: 356 SHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQ 415
+H +ELTAGYYN + RDG+ PIAR+ R+ L +C EMRD E+ + S P+ ++Q
Sbjct: 307 NHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD-SEQPSDAKSGPQELVQQ 365
Query: 416 LLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMDKNM 471
+L +I + GEN+ D A+ Q+I ++ + G K S F +LR+ ++
Sbjct: 366 VLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 472 FEYHNWVRFTRFVRQLSGSSIFRAK 496
+ N+ F +FV ++ + A
Sbjct: 426 LQKSNFNIFKKFVLKMHADQDYCAN 450
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 255 bits (651), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 151/445 (33%), Positives = 221/445 (49%), Gaps = 26/445 (5%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVRWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL--GAIITKLM---------- 241
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L G II +
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 242 ------WSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEF 295
W +GEFQCYDKY+ A A G EW P A PE T F
Sbjct: 190 PSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGKYNDVPESTGF 247
Query: 296 FRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTP 355
F++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 248 FKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVE 306
Query: 356 SHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQ 415
+H +ELTAGYYN + RDG+ PIAR+ R+ L +C EMRD E+ + S P+ ++Q
Sbjct: 307 NHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD-SEQPSDAKSGPQELVQQ 365
Query: 416 LLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMDKNM 471
+L +I + GEN+ D A+ Q+I ++ + G K S F +LR+ ++
Sbjct: 366 VLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 472 FEYHNWVRFTRFVRQLSGSSIFRAK 496
+ N+ F +FV ++ + A
Sbjct: 426 LQKSNFNIFKKFVLKMHADQDYCAN 450
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 254 bits (650), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 151/445 (33%), Positives = 222/445 (49%), Gaps = 26/445 (5%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L+ L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL--GAIITKLM---------- 241
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L G II +
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 242 ------WSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEF 295
W +GEFQCYDKY+ A A G EW G N + PE T F
Sbjct: 190 PSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PESTGF 247
Query: 296 FRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTP 355
F++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 248 FKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVE 306
Query: 356 SHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQ 415
+H +ELTAGYYN + RDG+ PIAR+ R+ L C EMRD E+ + S P+ ++Q
Sbjct: 307 NHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFVCLEMRD-SEQPSDAKSGPQELVQQ 365
Query: 416 LLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMDKNM 471
+L +I + GEN+ D A+ Q+I ++ + G K S F +LR+ ++
Sbjct: 366 VLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 472 FEYHNWVRFTRFVRQLSGSSIFRAK 496
+ N+ F +FV ++ + A
Sbjct: 426 LQKSNFNIFKKFVLKMHADQDYCAN 450
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 254 bits (649), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 150/445 (33%), Positives = 223/445 (50%), Gaps = 26/445 (5%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L+ L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL--GAIITKLM---------- 241
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L G II +
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 242 ------WSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEF 295
W +GEFQCYDKY+ A A G EW G N + PE T F
Sbjct: 190 PSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PESTGF 247
Query: 296 FRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTP 355
F++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 248 FKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVE 306
Query: 356 SHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQ 415
+H +ELTAGYYN + RDG+ PIAR+ R+ L +C EMRD E+ + S P+ ++Q
Sbjct: 307 NHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD-SEQPSDAKSGPQELVQQ 365
Query: 416 LLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMDKNM 471
+L +I + G+N+ D A+ Q+I ++ + G K S F +LR+ ++
Sbjct: 366 VLSGGWREDIRVAGQNALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 472 FEYHNWVRFTRFVRQLSGSSIFRAK 496
+ N+ F +FV ++ + A
Sbjct: 426 LQKSNFNIFKKFVLKMHADQDYCAN 450
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 254 bits (649), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 156/459 (33%), Positives = 228/459 (49%), Gaps = 27/459 (5%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L+ L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL--GAIIT---------KLMW 242
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L G II +L +
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 243 -------SWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEF 295
W +GEFQCYDKY+ A A G EW P A PE T F
Sbjct: 190 PSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGKYNDVPESTGF 247
Query: 296 FRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTP 355
F++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 248 FKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVE 306
Query: 356 SHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQ 415
+H +ELTAGYYN + RDG+ PIAR+ R+ L +C EMRD E+ + S P+ ++Q
Sbjct: 307 NHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD-SEQPSDAKSGPQELVQQ 365
Query: 416 LLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMDKNM 471
+L I + GEN+ D A+ Q+I ++ + G K S F +LR+ ++
Sbjct: 366 VLSGGWREYIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 472 FEYHNWVRFTRFVRQLSGSSIFRAK-LDFRGDIRPSSAS 509
+ N+ F +FV ++ + A + I P S S
Sbjct: 426 LQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLSPS 464
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 254 bits (648), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 152/445 (34%), Positives = 223/445 (50%), Gaps = 26/445 (5%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L+ L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL--GAIIT---------KLMW 242
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L G II +L +
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 243 -------SWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEF 295
W +GEFQCYDKY+ A A G EW P A PE T F
Sbjct: 190 PSYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEW--ELPDDAGKYNDVPESTGF 247
Query: 296 FRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTP 355
F++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 248 FKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVE 306
Query: 356 SHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQ 415
+H +ELTAGYYN + RDG+ PIAR+ R+ L +C EMRD E+ + S P+ ++Q
Sbjct: 307 NHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD-SEQPSDAKSGPQELVQQ 365
Query: 416 LLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMDKNM 471
+L I + GEN+ D A+ Q+I ++ + G K S F +LR+ ++
Sbjct: 366 VLSGGWREYIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDL 425
Query: 472 FEYHNWVRFTRFVRQLSGSSIFRAK 496
+ N+ F +FV ++ + A
Sbjct: 426 LQKSNFNIFKKFVLKMHADQDYCAN 450
>pdb|1VEO|A Chain A, Crystal Structure Analysis Of Y164fMALTOSE OF BACILLUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 147/331 (44%), Gaps = 41/331 (12%)
Query: 145 NCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYIS-LGC 203
N G+K+ +++ HQCG GD VP+P WV + D L + G N E ++ L
Sbjct: 77 NAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQ-KSDDSLYFKSETGTVNKETLNPLAS 135
Query: 204 DILPVLRGRSPIQAYTDF---MRNFRDTFRPLL--GAIITKLMW-SWRSRE------LGE 251
D++ G + YT F M+ ++D + G +L + S+ + + G+
Sbjct: 136 DVIRKEYG----ELYTAFAAAMKPYKDVIAKIFLSGGPAGELRYPSYTTSDGTGYPSRGK 191
Query: 252 FQCY-----DKYMLASLN--ACAREIGMREWGDGGPIGASNLMQDPEHTEFFRTDNGLWN 304
FQ Y K+ L LN E+ + WG + + + P E F + L
Sbjct: 192 FQAYTEFAKSKFRLWVLNKYGSLNEVN-KAWGT--KLISELAILPPSDGEQFLMNGYL-- 246
Query: 305 TAYGNFFLEWYSGMLLLHGERICREAETIFRGT-RVNTSAKVGGIHWHYGTPS--HPSEL 361
+ YG +LEWY G+L H + I A F T +V AK+ G+HW Y P+ H +E
Sbjct: 247 SMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEK 306
Query: 362 TAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAAR 421
AGY + + + F + +C EM D+ +S P+ ++ + A
Sbjct: 307 PAGY------NDYSHLLDAFKSAKLDVTFTCLEM--TDKGSYPEYSMPKTLVQNIATLAN 358
Query: 422 ICEIPLEGENSATSLDDAAFQQVIKMSKFYS 452
I L GEN+ + ++ +++V +M+ Y+
Sbjct: 359 EKGIVLNGENALSIGNEEEYKRVAEMAFNYN 389
>pdb|1ITC|A Chain A, Beta-amylase From Bacillus Cereus Var. Mycoides Complexed
With Maltopentaose
Length = 516
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 146/333 (43%), Gaps = 45/333 (13%)
Query: 145 NCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYIS-LGC 203
N G+K+ +++ HQCG GD VP+P WV + D L + G N E ++ L
Sbjct: 77 NAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQ-KSDDSLYFKSETGTVNKETLNPLAS 135
Query: 204 DILPVLRGRSPIQAYTDF---MRNFRDTFRPLL------GAI-----ITKLMWSWRSREL 249
D++ G + YT F M+ ++D + GA+ T + SR
Sbjct: 136 DVIRKEYG----ELYTAFAAAMKPYKDVIAKIYLSGGPAGALRYPSYTTSDGTGYPSR-- 189
Query: 250 GEFQCY-----DKYMLASLN--ACAREIGMREWGDGGPIGASNLMQDPEHTEFFRTDNGL 302
G+FQ Y K+ L LN E+ + WG + + + P E F + L
Sbjct: 190 GKFQAYTEFAKSKFRLWVLNKYGSLNEVN-KAWGT--KLISELAILPPSDGEQFLMNGYL 246
Query: 303 WNTAYGNFFLEWYSGMLLLHGERICREAETIFRGT-RVNTSAKVGGIHWHYGTPS--HPS 359
+ YG +LEWY G+L H + I A F T +V AK+ G+HW Y P+ H +
Sbjct: 247 --SMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGA 304
Query: 360 ELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLA 419
E AGY + + + F + +C EM D+ +S P+ ++ +
Sbjct: 305 EKPAGY------NDYSHLLDAFKSAKLDVTFTCLEM--TDKGSYPEYSMPKTLVQNIATL 356
Query: 420 ARICEIPLEGENSATSLDDAAFQQVIKMSKFYS 452
A I L GEN+ + ++ +++V +M+ Y+
Sbjct: 357 ANEKGIVLNGENALSIGNEEEYKRVAEMAFNYN 389
>pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form
pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed With Maltose
pdb|5BCA|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|1J18|A Chain A, Crystal Structure Of A Beta-Amylase From Bacillus Cereus
Var. Mycoides Cocrystallized With Maltose
pdb|1J0Y|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Z|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J10|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J11|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J12|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1VEM|A Chain A, Crystal Structure Analysis Of Bacillus Cereus Beta-amylase
At The Optimum Ph (6.5)
Length = 516
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 147/331 (44%), Gaps = 41/331 (12%)
Query: 145 NCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYIS-LGC 203
N G+K+ +++ HQCG GD VP+P WV + D L + G N E ++ L
Sbjct: 77 NAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQ-KSDDSLYFKSETGTVNKETLNPLAS 135
Query: 204 DILPVLRGRSPIQAYTDF---MRNFRDTFRP--LLGAIITKLMW-SWRSRE------LGE 251
D++ G + YT F M+ ++D L G +L + S+ + + G+
Sbjct: 136 DVIRKEYG----ELYTAFAAAMKPYKDVIAKIYLSGGPAGELRYPSYTTSDGTGYPSRGK 191
Query: 252 FQCY-----DKYMLASLN--ACAREIGMREWGDGGPIGASNLMQDPEHTEFFRTDNGLWN 304
FQ Y K+ L LN E+ + WG + + + P E F + L
Sbjct: 192 FQAYTEFAKSKFRLWVLNKYGSLNEVN-KAWGT--KLISELAILPPSDGEQFLMNGYL-- 246
Query: 305 TAYGNFFLEWYSGMLLLHGERICREAETIFRGT-RVNTSAKVGGIHWHYGTPS--HPSEL 361
+ YG +LEWY G+L H + I A F T +V AK+ G+HW Y P+ H +E
Sbjct: 247 SMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEK 306
Query: 362 TAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAAR 421
AGY + + + F + +C EM D+ +S P+ ++ + A
Sbjct: 307 PAGY------NDYSHLLDAFKSAKLDVTFTCLEM--TDKGSYPEYSMPKTLVQNIATLAN 358
Query: 422 ICEIPLEGENSATSLDDAAFQQVIKMSKFYS 452
I L GEN+ + ++ +++V +M+ Y+
Sbjct: 359 EKGIVLNGENALSIGNEEEYKRVAEMAFNYN 389
>pdb|1VEN|A Chain A, Crystal Structure Analysis Of Y164eMALTOSE OF BACILUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 147/331 (44%), Gaps = 41/331 (12%)
Query: 145 NCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYIS-LGC 203
N G+K+ +++ HQCG GD VP+P WV + D L + G N E ++ L
Sbjct: 77 NAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQ-KSDDSLYFKSETGTVNKETLNPLAS 135
Query: 204 DILPVLRGRSPIQAYTDF---MRNFRDTFRP--LLGAIITKLMW-SWRSRE------LGE 251
D++ G + YT F M+ ++D L G +L + S+ + + G+
Sbjct: 136 DVIRKEYG----ELYTAFAAAMKPYKDVIAKIELSGGPAGELRYPSYTTSDGTGYPSRGK 191
Query: 252 FQCY-----DKYMLASLN--ACAREIGMREWGDGGPIGASNLMQDPEHTEFFRTDNGLWN 304
FQ Y K+ L LN E+ + WG + + + P E F + L
Sbjct: 192 FQAYTEFAKSKFRLWVLNKYGSLNEVN-KAWGT--KLISELAILPPSDGEQFLMNGYL-- 246
Query: 305 TAYGNFFLEWYSGMLLLHGERICREAETIFRGT-RVNTSAKVGGIHWHYGTPS--HPSEL 361
+ YG +LEWY G+L H + I A F T +V AK+ G+HW Y P+ H +E
Sbjct: 247 SMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEK 306
Query: 362 TAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAAR 421
AGY + + + F + +C EM D+ +S P+ ++ + A
Sbjct: 307 PAGY------NDYSHLLDAFKSAKLDVTFTCLEM--TDKGSYPEYSMPKTLVQNIATLAN 358
Query: 422 ICEIPLEGENSATSLDDAAFQQVIKMSKFYS 452
I L GEN+ + ++ +++V +M+ Y+
Sbjct: 359 EKGIVLNGENALSIGNEEEYKRVAEMAFNYN 389
>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N)
MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5
Length = 516
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 147/331 (44%), Gaps = 41/331 (12%)
Query: 145 NCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYIS-LGC 203
N G+K+ +++ HQCG GD VP+P WV + D L + G N E ++ L
Sbjct: 77 NAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQ-KSDDSLYFKSETGTVNKETLNPLAS 135
Query: 204 DILPVLRGRSPIQAYTDF---MRNFRDTFRP--LLGAIITKLMW-SWRSRE------LGE 251
D++ G + YT F M+ ++D L G +L + S+ + + G+
Sbjct: 136 DVIRKEYG----ELYTAFAAAMKPYKDVIAKIELSGGPAGELRYPSYTTSDGTGYPSRGK 191
Query: 252 FQCY-----DKYMLASLN--ACAREIGMREWGDGGPIGASNLMQDPEHTEFFRTDNGLWN 304
FQ Y K+ L LN E+ + WG + + + P E F + L
Sbjct: 192 FQAYTEFAKSKFRLWVLNKYGSLNEVN-KAWGT--KLISELAILPPSDGEQFLMNGYL-- 246
Query: 305 TAYGNFFLEWYSGMLLLHGERICREAETIFRGT-RVNTSAKVGGIHWHYGTPS--HPSEL 361
+ YG +LEWY G+L H + I A F T +V AK+ G+HW Y P+ H +E
Sbjct: 247 SMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEK 306
Query: 362 TAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAAR 421
AGY + + + F + +C EM D+ +S P+ ++ + A
Sbjct: 307 PAGY------NDYSHLLDAFKSAKLDVNFTCLEM--TDKGSYPEYSMPKTLVQNIATLAN 358
Query: 422 ICEIPLEGENSATSLDDAAFQQVIKMSKFYS 452
I L GEN+ + ++ +++V +M+ Y+
Sbjct: 359 EKGIVLNGENALSIGNEEEYKRVAEMAFNYN 389
>pdb|3VOC|A Chain A, Crystal Structure Of The Catalytic Domain Of Beta-amylase
From Paenibacillus Polymyxa
Length = 419
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/379 (25%), Positives = 152/379 (40%), Gaps = 82/379 (21%)
Query: 131 YDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDR 190
+DW Y GLK +++ H+CG GD +PLP W+ + D ++ + D
Sbjct: 55 FDWSYYKTYANAVKEAGLKWVPIISTHKCGGNVGDDCNIPLPSWLSSKGSAD-EMQFKDE 113
Query: 191 FGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIITKLM--------- 241
G N E +S P+ G + Y + +F + F +II K+
Sbjct: 114 SGYANSEALS------PLWSGTG--KQYDELYASFAENFAGYK-SIIPKIYLSGGPSGEL 164
Query: 242 ----------WSWRSRELGEFQCY-------------DKY-MLASLNACAREIGMREWGD 277
WS+ R G+FQ Y DKY L +NA WG
Sbjct: 165 RYPSYYPAAGWSYPGR--GKFQAYTETAKNAFRTAMNDKYGSLDKINAA--------WGT 214
Query: 278 GGPIGASNLMQDPEHTEFFRTDNGLWNTAYGNFFLEWYSGMLLLH----GERICREAETI 333
+ + + + P + F T NG +N+AYG FL WY +L H G + +++
Sbjct: 215 --KLTSLSQINPPTDGDGFYT-NGGYNSAYGKDFLSWYQSVLEKHLGVIGAAAHKNFDSV 271
Query: 334 FRGTRVNTSAKVGGIHWHYGTPS--HPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCS 391
F G R+ AK+ G+HW P+ H +E GYY+ + + + F L +
Sbjct: 272 F-GVRI--GAKISGLHWQMNNPAMPHGTEQAGGYYD------YNRLIQKFKDADLDLTFT 322
Query: 392 CFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQV-IKMSKF 450
C EM D +S P + + A + L GEN A + FQ++ K++KF
Sbjct: 323 CLEMSDSGTAPN--YSLPSTLVDTVSSIANAKGVRLNGEN-ALPTGGSGFQKIEEKITKF 379
Query: 451 YSEGLEKPSFSFNFLRMDK 469
G F LR++
Sbjct: 380 GYHG-------FTLLRINN 391
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,376,658
Number of Sequences: 62578
Number of extensions: 633738
Number of successful extensions: 1620
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1531
Number of HSP's gapped (non-prelim): 24
length of query: 521
length of database: 14,973,337
effective HSP length: 103
effective length of query: 418
effective length of database: 8,527,803
effective search space: 3564621654
effective search space used: 3564621654
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)