Query 009981
Match_columns 521
No_of_seqs 178 out of 244
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 19:37:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02803 beta-amylase 100.0 1E-173 2E-178 1366.8 46.1 488 4-502 13-527 (548)
2 PLN00197 beta-amylase; Provisi 100.0 4E-173 9E-178 1365.5 45.8 473 29-502 30-553 (573)
3 PLN02801 beta-amylase 100.0 5E-168 1E-172 1319.0 42.8 422 70-495 10-453 (517)
4 PLN02161 beta-amylase 100.0 3E-167 6E-172 1312.4 44.7 417 70-490 86-530 (531)
5 PLN02905 beta-amylase 100.0 6E-167 1E-171 1328.2 41.9 416 71-490 260-695 (702)
6 PLN02705 beta-amylase 100.0 1E-165 2E-170 1316.0 42.7 416 71-491 242-676 (681)
7 PF01373 Glyco_hydro_14: Glyco 100.0 2E-146 5E-151 1136.6 26.7 376 79-483 1-402 (402)
8 PF02449 Glyco_hydro_42: Beta- 99.9 5.8E-27 1.3E-31 241.5 12.2 209 95-348 8-238 (374)
9 COG1874 LacA Beta-galactosidas 99.9 1.5E-21 3.2E-26 215.7 16.9 198 94-335 27-250 (673)
10 PF01301 Glyco_hydro_35: Glyco 99.0 1.4E-09 3E-14 111.9 9.9 77 94-177 21-102 (319)
11 PLN03059 beta-galactosidase; P 98.6 2.6E-07 5.7E-12 105.4 12.4 138 94-271 56-213 (840)
12 TIGR03356 BGL beta-galactosida 98.4 7.2E-07 1.6E-11 95.3 7.8 74 92-177 49-125 (427)
13 KOG0496 Beta-galactosidase [Ca 98.2 9.6E-06 2.1E-10 90.3 10.6 146 94-285 46-216 (649)
14 PF00232 Glyco_hydro_1: Glycos 98.0 1.4E-05 3.1E-10 85.8 7.7 106 93-238 54-163 (455)
15 PRK09852 cryptic 6-phospho-bet 97.7 0.00021 4.6E-09 77.8 11.0 74 92-177 66-143 (474)
16 PRK15014 6-phospho-beta-glucos 97.6 0.00015 3.3E-09 79.0 8.3 108 92-238 64-175 (477)
17 PLN02814 beta-glucosidase 97.6 0.00023 5E-09 78.1 8.8 108 92-238 72-182 (504)
18 PF00150 Cellulase: Cellulase 97.6 0.0003 6.4E-09 68.3 8.6 123 97-234 21-164 (281)
19 PLN02998 beta-glucosidase 97.5 0.00024 5.2E-09 77.9 8.1 108 92-238 77-187 (497)
20 PLN02849 beta-glucosidase 97.4 0.00037 8E-09 76.5 8.5 108 92-238 74-184 (503)
21 TIGR01233 lacG 6-phospho-beta- 97.4 0.00048 1E-08 74.9 8.8 74 92-177 48-124 (467)
22 PRK13511 6-phospho-beta-galact 97.4 0.00068 1.5E-08 73.7 9.8 103 92-235 49-154 (469)
23 PRK09593 arb 6-phospho-beta-gl 97.3 0.00061 1.3E-08 74.4 8.6 108 92-238 68-179 (478)
24 PRK09589 celA 6-phospho-beta-g 97.3 0.00062 1.3E-08 74.3 8.3 108 92-238 62-173 (476)
25 smart00633 Glyco_10 Glycosyl h 97.3 0.011 2.3E-07 59.0 16.0 47 120-177 3-49 (254)
26 PF14871 GHL6: Hypothetical gl 97.1 0.0047 1E-07 56.8 10.9 110 101-233 4-123 (132)
27 COG2723 BglB Beta-glucosidase/ 97.0 0.009 2E-07 65.2 12.8 106 91-235 53-162 (460)
28 PF02638 DUF187: Glycosyl hydr 96.6 0.026 5.6E-07 58.5 12.1 227 93-391 15-258 (311)
29 PF01229 Glyco_hydro_39: Glyco 96.4 0.0098 2.1E-07 64.8 8.1 116 96-251 38-169 (486)
30 PF00331 Glyco_hydro_10: Glyco 96.1 0.054 1.2E-06 56.1 11.7 204 102-401 26-249 (320)
31 COG3693 XynA Beta-1,4-xylanase 96.0 0.05 1.1E-06 57.3 10.3 37 114-151 60-99 (345)
32 PF07745 Glyco_hydro_53: Glyco 94.1 0.083 1.8E-06 55.7 5.6 52 102-158 29-80 (332)
33 PF14488 DUF4434: Domain of un 93.0 0.33 7.1E-06 46.3 7.2 58 94-155 17-84 (166)
34 cd00465 URO-D_CIMS_like The UR 92.2 0.54 1.2E-05 47.3 7.9 117 98-230 145-275 (306)
35 PRK11572 copper homeostasis pr 92.0 0.37 8E-06 49.2 6.4 71 74-156 50-124 (248)
36 cd03465 URO-D_like The URO-D _ 91.3 0.94 2E-05 46.1 8.7 80 99-191 170-252 (330)
37 TIGR02104 pulA_typeI pullulana 90.9 2.8 6E-05 47.4 12.6 145 97-269 164-338 (605)
38 PF10566 Glyco_hydro_97: Glyco 90.7 0.44 9.5E-06 49.2 5.6 104 72-202 83-186 (273)
39 PF03932 CutC: CutC family; I 90.6 0.49 1.1E-05 46.8 5.6 72 73-156 48-123 (201)
40 cd03311 CIMS_C_terminal_like C 90.0 3.1 6.8E-05 42.9 11.2 96 97-194 155-253 (332)
41 KOG0626 Beta-glucosidase, lact 89.3 1.1 2.5E-05 50.0 7.7 108 92-238 86-198 (524)
42 TIGR01463 mtaA_cmuA methyltran 88.9 2.9 6.2E-05 43.2 9.9 58 100-161 183-243 (340)
43 PRK10785 maltodextrin glucosid 88.2 13 0.00028 42.1 15.3 157 95-269 177-362 (598)
44 COG3142 CutC Uncharacterized p 88.1 0.92 2E-05 46.1 5.5 77 72-160 48-128 (241)
45 PF03659 Glyco_hydro_71: Glyco 85.7 1.8 4E-05 46.5 6.5 54 95-157 15-68 (386)
46 PF02065 Melibiase: Melibiase; 85.6 3.5 7.7E-05 44.6 8.7 80 94-177 55-145 (394)
47 cd02742 GH20_hexosaminidase Be 85.0 7.3 0.00016 40.2 10.3 83 91-188 10-111 (303)
48 cd06592 GH31_glucosidase_KIAA1 84.8 14 0.00031 38.0 12.4 83 94-192 27-116 (303)
49 PLN02361 alpha-amylase 84.8 16 0.00035 39.7 13.2 68 94-164 26-107 (401)
50 PRK13111 trpA tryptophan synth 84.7 4.6 9.9E-05 41.2 8.6 92 72-194 86-178 (258)
51 PF00290 Trp_syntA: Tryptophan 84.6 7.2 0.00016 40.1 9.9 91 72-193 84-175 (259)
52 cd06564 GH20_DspB_LnbB-like Gl 84.6 7.4 0.00016 40.5 10.2 84 91-189 11-122 (326)
53 TIGR02102 pullulan_Gpos pullul 84.5 16 0.00035 44.7 14.2 145 95-269 478-661 (1111)
54 COG1649 Uncharacterized protei 83.9 15 0.00032 40.4 12.4 154 91-265 58-227 (418)
55 PF03198 Glyco_hydro_72: Gluca 83.6 3.3 7.3E-05 43.7 7.2 80 92-186 48-137 (314)
56 cd06565 GH20_GcnA-like Glycosy 82.1 11 0.00025 38.9 10.4 64 92-155 12-81 (301)
57 cd00717 URO-D Uroporphyrinogen 81.6 4.3 9.4E-05 41.9 7.1 75 101-191 181-260 (335)
58 cd06593 GH31_xylosidase_YicI Y 81.4 17 0.00038 37.1 11.4 88 93-194 20-114 (308)
59 PRK10658 putative alpha-glucos 80.8 10 0.00023 43.7 10.4 86 95-194 281-373 (665)
60 PRK01060 endonuclease IV; Prov 80.7 2.9 6.3E-05 41.5 5.3 59 81-151 1-64 (281)
61 PRK00115 hemE uroporphyrinogen 80.0 13 0.00029 38.8 10.1 97 101-214 190-291 (346)
62 smart00642 Aamy Alpha-amylase 79.4 8.9 0.00019 36.4 7.9 69 93-161 15-97 (166)
63 PLN02229 alpha-galactosidase 79.2 4.8 0.0001 44.2 6.7 56 94-151 77-145 (427)
64 cd06563 GH20_chitobiase-like T 79.1 15 0.00033 38.8 10.3 83 92-189 13-126 (357)
65 TIGR00542 hxl6Piso_put hexulos 78.9 3.1 6.8E-05 41.5 4.9 56 94-152 13-70 (279)
66 PF00128 Alpha-amylase: Alpha 77.9 5.7 0.00012 38.6 6.3 63 95-160 2-79 (316)
67 TIGR00433 bioB biotin syntheta 77.8 4.6 0.0001 40.6 5.8 54 100-155 123-179 (296)
68 PLN02591 tryptophan synthase 77.3 13 0.00029 37.8 8.9 89 74-193 77-166 (250)
69 COG2730 BglC Endoglucanase [Ca 77.3 3.7 7.9E-05 44.2 5.2 106 94-238 65-184 (407)
70 PLN02877 alpha-amylase/limit d 77.2 42 0.00091 40.7 14.1 145 99-269 375-578 (970)
71 TIGR01515 branching_enzym alph 77.1 5.3 0.00012 45.3 6.6 56 95-156 154-228 (613)
72 CHL00200 trpA tryptophan synth 77.0 24 0.00053 36.2 10.7 91 73-194 89-180 (263)
73 cd04724 Tryptophan_synthase_al 76.5 28 0.0006 34.9 10.8 62 75-155 76-137 (242)
74 COG3867 Arabinogalactan endo-1 76.5 5.4 0.00012 42.4 5.9 65 92-158 57-126 (403)
75 TIGR01464 hemE uroporphyrinoge 76.3 8.2 0.00018 40.0 7.2 95 102-213 185-284 (338)
76 cd03308 CmuA_CmuC_like CmuA_Cm 76.3 4.3 9.3E-05 43.2 5.3 80 75-160 172-277 (378)
77 PRK10933 trehalose-6-phosphate 75.3 42 0.00091 37.8 12.9 66 93-160 29-107 (551)
78 PRK13209 L-xylulose 5-phosphat 74.1 6.1 0.00013 39.3 5.5 66 82-153 8-76 (283)
79 PLN00196 alpha-amylase; Provis 74.0 56 0.0012 35.9 13.1 64 95-161 42-119 (428)
80 TIGR02403 trehalose_treC alpha 72.8 49 0.0011 37.1 12.7 66 93-160 23-101 (543)
81 TIGR02402 trehalose_TreZ malto 72.6 9.8 0.00021 42.6 7.2 61 95-160 109-186 (542)
82 PLN02808 alpha-galactosidase 71.9 11 0.00024 40.9 7.1 58 94-151 46-114 (386)
83 PF08821 CGGC: CGGC domain; I 71.2 13 0.00029 33.4 6.4 56 96-157 51-107 (107)
84 PF02836 Glyco_hydro_2_C: Glyc 71.0 4.7 0.0001 40.8 3.9 46 93-152 32-77 (298)
85 PRK12313 glycogen branching en 70.2 9.4 0.0002 43.4 6.4 74 77-156 149-242 (633)
86 PHA00442 host recBCD nuclease 69.9 7.5 0.00016 31.5 3.9 27 101-146 30-56 (59)
87 cd06568 GH20_SpHex_like A subg 69.6 51 0.0011 34.7 11.2 158 92-278 13-197 (329)
88 cd03307 Mta_CmuA_like MtaA_Cmu 69.4 6.4 0.00014 40.6 4.5 55 101-161 175-232 (326)
89 cd06562 GH20_HexA_HexB-like Be 69.2 62 0.0014 34.2 11.9 84 92-190 13-111 (348)
90 TIGR02103 pullul_strch alpha-1 68.6 85 0.0019 37.8 13.9 25 99-123 288-314 (898)
91 PF01261 AP_endonuc_2: Xylose 68.0 3.3 7.2E-05 38.1 1.9 44 103-151 1-44 (213)
92 PRK10150 beta-D-glucuronidase; 67.5 13 0.00029 41.7 6.8 46 93-152 309-354 (604)
93 PF01055 Glyco_hydro_31: Glyco 67.3 17 0.00037 38.8 7.4 85 94-194 40-134 (441)
94 cd03309 CmuC_like CmuC_like. P 66.5 13 0.00029 38.9 6.2 53 104-160 162-221 (321)
95 cd06604 GH31_glucosidase_II_Ma 66.4 55 0.0012 34.2 10.8 85 93-193 20-113 (339)
96 PRK09856 fructoselysine 3-epim 66.3 15 0.00032 36.4 6.2 48 98-152 14-65 (275)
97 TIGR02456 treS_nterm trehalose 66.1 81 0.0018 35.2 12.6 65 93-160 24-102 (539)
98 PRK06252 methylcobalamin:coenz 65.8 6.6 0.00014 40.5 3.8 55 100-160 183-240 (339)
99 PF10566 Glyco_hydro_97: Glyco 65.0 14 0.0003 38.3 5.9 70 94-164 29-102 (273)
100 PRK08195 4-hyroxy-2-oxovalerat 64.8 26 0.00056 37.1 8.0 90 101-229 92-186 (337)
101 cd07944 DRE_TIM_HOA_like 4-hyd 64.5 43 0.00094 34.1 9.3 92 100-230 85-181 (266)
102 PLN02389 biotin synthase 63.7 12 0.00027 40.2 5.5 47 99-151 177-230 (379)
103 cd06599 GH31_glycosidase_Aec37 63.1 36 0.00078 35.3 8.6 84 96-193 28-120 (317)
104 PF01208 URO-D: Uroporphyrinog 62.8 8.6 0.00019 39.5 4.0 75 101-190 186-264 (343)
105 PLN02692 alpha-galactosidase 62.7 20 0.00044 39.3 6.9 64 94-161 70-144 (412)
106 cd06591 GH31_xylosidase_XylS X 62.2 1.1E+02 0.0023 32.0 11.8 86 93-195 20-115 (319)
107 PF13200 DUF4015: Putative gly 61.8 1.3E+02 0.0028 32.0 12.4 114 92-232 8-136 (316)
108 COG0159 TrpA Tryptophan syntha 61.1 48 0.001 34.5 8.9 92 72-194 91-183 (265)
109 TIGR03217 4OH_2_O_val_ald 4-hy 60.7 37 0.0008 35.9 8.3 92 100-230 90-186 (333)
110 PRK09441 cytoplasmic alpha-amy 60.0 24 0.00052 38.6 7.0 68 94-161 19-108 (479)
111 PLN02433 uroporphyrinogen deca 59.9 19 0.00041 37.7 5.9 74 102-191 184-262 (345)
112 PRK09989 hypothetical protein; 59.9 22 0.00048 35.1 6.2 42 98-151 16-57 (258)
113 TIGR03234 OH-pyruv-isom hydrox 59.6 20 0.00044 35.1 5.8 42 98-151 15-56 (254)
114 PRK13210 putative L-xylulose 5 58.7 22 0.00048 35.1 5.9 53 97-153 16-71 (284)
115 cd06600 GH31_MGAM-like This fa 57.1 94 0.002 32.4 10.4 83 93-193 20-113 (317)
116 cd07943 DRE_TIM_HOA 4-hydroxy- 56.1 38 0.00083 34.1 7.2 92 101-231 89-185 (263)
117 COG1856 Uncharacterized homolo 55.1 11 0.00024 38.6 3.2 51 100-152 100-154 (275)
118 PRK13655 phosphoenolpyruvate c 54.9 51 0.0011 37.1 8.4 99 132-238 216-327 (494)
119 TIGR03551 F420_cofH 7,8-dideme 54.4 9.7 0.00021 39.8 2.7 55 100-154 141-199 (343)
120 COG3250 LacZ Beta-galactosidas 53.0 19 0.00041 42.7 5.0 27 91-117 315-341 (808)
121 PRK13125 trpA tryptophan synth 52.6 95 0.0021 31.0 9.3 90 74-192 73-162 (244)
122 PF01791 DeoC: DeoC/LacD famil 51.1 9.9 0.00021 37.5 2.0 53 100-153 79-131 (236)
123 PRK07094 biotin synthase; Prov 51.1 17 0.00036 37.3 3.8 51 100-151 129-182 (323)
124 PRK10340 ebgA cryptic beta-D-g 50.3 34 0.00075 41.4 6.7 66 73-152 329-396 (1021)
125 cd06602 GH31_MGAM_SI_GAA This 50.1 1.5E+02 0.0033 31.2 10.8 91 93-194 20-119 (339)
126 TIGR03699 mena_SCO4550 menaqui 49.3 12 0.00026 38.9 2.4 52 100-151 143-198 (340)
127 PRK04302 triosephosphate isome 49.3 37 0.0008 33.4 5.7 46 101-156 76-121 (223)
128 TIGR03700 mena_SCO4494 putativ 49.2 16 0.00035 38.4 3.4 55 99-153 149-207 (351)
129 cd03174 DRE_TIM_metallolyase D 49.1 91 0.002 30.5 8.4 67 75-155 66-136 (265)
130 PRK12677 xylose isomerase; Pro 48.9 35 0.00076 36.8 5.9 50 97-151 31-84 (384)
131 PLN02962 hydroxyacylglutathion 48.8 19 0.00042 36.5 3.7 28 137-164 49-76 (251)
132 PF05706 CDKN3: Cyclin-depende 48.7 16 0.00035 35.6 3.0 67 77-151 26-104 (168)
133 COG1099 Predicted metal-depend 48.5 13 0.00027 38.2 2.3 57 100-157 14-73 (254)
134 cd06570 GH20_chitobiase-like_1 47.8 1.6E+02 0.0035 30.9 10.4 83 92-189 13-108 (311)
135 PRK08445 hypothetical protein; 47.7 19 0.00042 38.1 3.7 56 100-155 144-203 (348)
136 PRK07360 FO synthase subunit 2 47.6 16 0.00035 38.8 3.1 53 99-151 162-218 (371)
137 TIGR00423 radical SAM domain p 47.5 17 0.00037 37.4 3.2 53 99-151 106-162 (309)
138 PLN03231 putative alpha-galact 47.4 34 0.00074 36.9 5.5 63 95-161 16-109 (357)
139 PRK09997 hydroxypyruvate isome 46.9 39 0.00085 33.4 5.5 42 98-151 16-57 (258)
140 TIGR02631 xylA_Arthro xylose i 46.9 26 0.00056 37.8 4.5 54 94-152 29-86 (382)
141 PF13653 GDPD_2: Glycerophosph 46.8 20 0.00043 25.6 2.5 18 100-117 10-27 (30)
142 PRK00042 tpiA triosephosphate 46.7 34 0.00075 34.9 5.2 45 101-155 77-125 (250)
143 cd06603 GH31_GANC_GANAB_alpha 46.5 1.7E+02 0.0036 30.7 10.3 84 93-194 20-114 (339)
144 PRK12595 bifunctional 3-deoxy- 46.1 62 0.0014 34.8 7.2 70 75-151 117-186 (360)
145 PRK06256 biotin synthase; Vali 45.2 22 0.00048 36.8 3.6 46 100-151 152-204 (336)
146 TIGR00262 trpA tryptophan synt 45.1 86 0.0019 31.9 7.7 89 74-193 86-175 (256)
147 cd01299 Met_dep_hydrolase_A Me 45.0 62 0.0014 32.9 6.8 65 92-160 115-182 (342)
148 PRK13398 3-deoxy-7-phosphohept 44.9 63 0.0014 33.3 6.8 61 91-151 35-95 (266)
149 PRK14511 maltooligosyl trehalo 44.6 66 0.0014 38.7 7.7 65 95-160 18-95 (879)
150 TIGR03849 arch_ComA phosphosul 44.0 48 0.001 34.0 5.6 47 97-151 71-117 (237)
151 PRK14510 putative bifunctional 43.9 1.7E+02 0.0037 36.5 11.2 62 101-162 191-276 (1221)
152 TIGR00677 fadh2_euk methylenet 43.9 51 0.0011 34.1 5.9 72 98-181 146-226 (281)
153 PRK04326 methionine synthase; 43.9 42 0.00091 34.7 5.4 78 97-191 161-239 (330)
154 PF01717 Meth_synt_2: Cobalami 43.7 36 0.00078 35.1 4.9 86 97-194 154-245 (324)
155 PRK15108 biotin synthase; Prov 43.3 35 0.00076 36.1 4.8 51 100-151 136-188 (345)
156 cd03310 CIMS_like CIMS - Cobal 43.2 79 0.0017 32.2 7.2 77 97-190 151-229 (321)
157 PRK08508 biotin synthase; Prov 43.2 28 0.00061 35.5 4.0 47 100-152 102-155 (279)
158 PRK14706 glycogen branching en 43.0 54 0.0012 37.9 6.5 60 92-156 162-239 (639)
159 cd07948 DRE_TIM_HCS Saccharomy 42.9 93 0.002 31.8 7.6 84 100-193 74-166 (262)
160 cd07491 Peptidases_S8_7 Peptid 42.9 1.3E+02 0.0028 30.1 8.5 72 94-174 86-159 (247)
161 PLN02475 5-methyltetrahydropte 42.8 42 0.00092 39.6 5.7 81 97-190 586-673 (766)
162 PRK05222 5-methyltetrahydropte 42.7 32 0.0007 40.4 4.8 82 97-189 581-667 (758)
163 TIGR02090 LEU1_arch isopropylm 42.4 71 0.0015 34.1 6.9 84 99-192 73-165 (363)
164 PRK05402 glycogen branching en 42.3 63 0.0014 37.6 7.0 61 91-156 259-337 (726)
165 PRK00957 methionine synthase; 42.2 41 0.00088 34.5 5.0 80 97-194 144-224 (305)
166 PRK09432 metF 5,10-methylenete 42.2 57 0.0012 34.0 6.1 66 98-182 161-242 (296)
167 cd06589 GH31 The enzymes of gl 41.6 76 0.0016 32.0 6.7 71 93-180 20-99 (265)
168 COG2876 AroA 3-deoxy-D-arabino 41.3 46 0.001 34.9 5.1 54 95-148 227-282 (286)
169 PRK09525 lacZ beta-D-galactosi 41.1 40 0.00086 41.0 5.3 48 92-153 366-413 (1027)
170 PRK09875 putative hydrolase; P 41.0 73 0.0016 33.2 6.6 68 90-177 27-95 (292)
171 TIGR00676 fadh2 5,10-methylene 40.9 57 0.0012 33.2 5.8 73 99-182 143-223 (272)
172 PLN02960 alpha-amylase 40.2 75 0.0016 38.3 7.2 55 93-152 412-484 (897)
173 PF01136 Peptidase_U32: Peptid 40.2 53 0.0011 31.9 5.2 37 97-151 2-40 (233)
174 PRK06520 5-methyltetrahydropte 39.8 46 0.001 35.6 5.1 67 97-164 170-247 (368)
175 TIGR02401 trehalose_TreY malto 39.7 96 0.0021 37.1 8.0 65 95-160 14-91 (825)
176 PF04476 DUF556: Protein of un 39.3 38 0.00083 34.7 4.1 47 103-155 137-186 (235)
177 PF13204 DUF4038: Protein of u 39.0 72 0.0016 32.9 6.2 82 73-157 8-110 (289)
178 COG0149 TpiA Triosephosphate i 38.8 56 0.0012 33.8 5.2 44 102-155 80-127 (251)
179 PTZ00445 p36-lilke protein; Pr 38.7 70 0.0015 32.5 5.8 64 92-156 24-99 (219)
180 TIGR02751 PEPCase_arch phospho 38.6 86 0.0019 35.5 7.0 99 132-238 224-335 (506)
181 PRK12331 oxaloacetate decarbox 38.4 70 0.0015 35.4 6.3 53 94-156 93-145 (448)
182 PRK10426 alpha-glucosidase; Pr 38.3 1.3E+02 0.0029 34.6 8.7 87 96-194 220-317 (635)
183 PF02679 ComA: (2R)-phospho-3- 38.2 43 0.00093 34.4 4.3 68 74-154 66-133 (244)
184 PLN02784 alpha-amylase 38.1 65 0.0014 38.8 6.2 66 96-161 520-596 (894)
185 cd06594 GH31_glucosidase_YihQ 37.6 2.7E+02 0.0058 29.1 10.2 86 95-194 21-120 (317)
186 PRK12858 tagatose 1,6-diphosph 37.6 76 0.0016 34.0 6.2 67 97-163 106-172 (340)
187 PRK02227 hypothetical protein; 37.4 40 0.00087 34.5 4.0 47 101-151 135-184 (238)
188 PRK09505 malS alpha-amylase; R 37.3 72 0.0016 37.2 6.4 62 95-156 228-314 (683)
189 cd06598 GH31_transferase_CtsZ 36.9 3.5E+02 0.0077 28.1 10.9 63 93-155 20-91 (317)
190 cd07939 DRE_TIM_NifV Streptomy 36.8 1.3E+02 0.0027 30.3 7.4 101 100-229 72-181 (259)
191 cd07937 DRE_TIM_PC_TC_5S Pyruv 36.6 89 0.0019 31.9 6.4 100 94-230 88-192 (275)
192 PF05853 DUF849: Prokaryotic p 36.4 3.5E+02 0.0075 27.9 10.6 60 94-156 23-82 (272)
193 PLN02447 1,4-alpha-glucan-bran 36.2 89 0.0019 37.0 7.0 78 76-159 230-326 (758)
194 PRK14566 triosephosphate isome 36.1 63 0.0014 33.4 5.2 44 102-155 87-134 (260)
195 TIGR02026 BchE magnesium-proto 35.9 88 0.0019 34.6 6.6 48 100-152 287-341 (497)
196 PLN02540 methylenetetrahydrofo 34.4 78 0.0017 36.3 6.0 74 97-181 153-234 (565)
197 COG0620 MetE Methionine syntha 34.0 71 0.0015 34.0 5.3 64 97-166 158-227 (330)
198 TIGR00419 tim triosephosphate 33.9 80 0.0017 31.5 5.3 45 102-156 73-117 (205)
199 PLN02899 alpha-galactosidase 33.9 56 0.0012 37.8 4.8 54 105-162 60-137 (633)
200 smart00481 POLIIIAc DNA polyme 33.8 1.4E+02 0.0031 23.4 5.9 43 99-152 17-59 (67)
201 TIGR01371 met_syn_B12ind 5-met 33.5 56 0.0012 38.4 4.8 81 97-189 575-661 (750)
202 PF14587 Glyco_hydr_30_2: O-Gl 33.2 2.1E+02 0.0046 31.4 8.8 41 127-180 94-137 (384)
203 PRK12568 glycogen branching en 33.2 1.1E+02 0.0023 36.2 7.0 59 93-156 265-341 (730)
204 TIGR00539 hemN_rel putative ox 32.9 1.2E+02 0.0026 32.0 6.7 45 100-149 100-151 (360)
205 PF04187 DUF399: Protein of un 32.7 36 0.00077 33.7 2.7 21 131-151 86-106 (213)
206 PRK14565 triosephosphate isome 32.6 80 0.0017 32.2 5.2 44 102-155 77-124 (237)
207 PRK09121 5-methyltetrahydropte 32.6 52 0.0011 34.8 4.1 60 97-164 156-216 (339)
208 PRK06233 hypothetical protein; 32.4 77 0.0017 33.9 5.3 67 97-164 171-249 (372)
209 PRK06988 putative formyltransf 32.3 1.6E+02 0.0034 30.8 7.5 96 100-215 15-119 (312)
210 cd02801 DUS_like_FMN Dihydrour 32.1 1.2E+02 0.0026 29.2 6.1 64 73-146 52-121 (231)
211 smart00854 PGA_cap Bacterial c 31.9 1.1E+02 0.0024 30.2 6.0 56 95-157 158-213 (239)
212 COG0407 HemE Uroporphyrinogen- 31.9 79 0.0017 34.1 5.2 82 78-162 145-252 (352)
213 PF13380 CoA_binding_2: CoA bi 31.8 1.1E+02 0.0024 27.2 5.5 46 92-151 61-106 (116)
214 cd00530 PTE Phosphotriesterase 31.8 1E+02 0.0023 30.7 5.9 56 92-158 27-83 (293)
215 PF09184 PPP4R2: PPP4R2; Inte 31.6 12 0.00026 39.0 -0.9 30 461-490 97-127 (288)
216 cd06569 GH20_Sm-chitobiase-lik 31.4 3.8E+02 0.0083 29.6 10.6 62 92-153 17-116 (445)
217 PLN02429 triosephosphate isome 31.4 83 0.0018 33.5 5.2 44 102-155 139-186 (315)
218 PRK09240 thiH thiamine biosynt 30.7 95 0.0021 33.1 5.7 47 100-151 163-220 (371)
219 PTZ00170 D-ribulose-5-phosphat 29.7 1.1E+02 0.0024 30.5 5.6 46 94-147 16-63 (228)
220 cd00958 DhnA Class I fructose- 29.7 75 0.0016 31.1 4.4 55 94-152 73-127 (235)
221 cd07941 DRE_TIM_LeuA3 Desulfob 29.3 2.1E+02 0.0046 29.1 7.7 103 101-230 82-194 (273)
222 PRK14040 oxaloacetate decarbox 29.2 1.3E+02 0.0028 34.6 6.7 72 73-156 74-146 (593)
223 PRK05799 coproporphyrinogen II 28.9 1.3E+02 0.0028 31.7 6.3 45 100-149 99-150 (374)
224 PF05378 Hydant_A_N: Hydantoin 28.9 91 0.002 30.0 4.7 45 95-147 132-176 (176)
225 cd06597 GH31_transferase_CtsY 28.8 1.7E+02 0.0036 31.0 7.0 62 93-154 20-105 (340)
226 cd06595 GH31_xylosidase_XylS-l 28.7 1.6E+02 0.0035 30.2 6.7 61 94-154 22-94 (292)
227 TIGR02100 glgX_debranch glycog 28.4 86 0.0019 36.5 5.2 64 97-160 182-272 (688)
228 PRK02412 aroD 3-dehydroquinate 28.4 2.4E+02 0.0053 28.5 7.9 69 75-158 74-144 (253)
229 PRK12581 oxaloacetate decarbox 28.3 2.1E+02 0.0045 32.1 7.9 70 91-177 126-196 (468)
230 TIGR03471 HpnJ hopanoid biosyn 28.2 1.3E+02 0.0028 32.9 6.3 49 100-153 287-342 (472)
231 COG1082 IolE Sugar phosphate i 28.1 1.2E+02 0.0026 29.6 5.5 50 95-151 13-62 (274)
232 TIGR00695 uxuA mannonate dehyd 27.9 4.5E+02 0.0098 29.0 10.2 77 91-194 37-124 (394)
233 PRK08125 bifunctional UDP-gluc 27.8 1.9E+02 0.0042 33.0 7.8 95 100-214 13-116 (660)
234 PTZ00333 triosephosphate isome 27.5 1.2E+02 0.0026 31.2 5.5 44 102-155 81-128 (255)
235 PRK05904 coproporphyrinogen II 27.4 1.9E+02 0.0041 30.8 7.1 56 100-166 103-168 (353)
236 TIGR01093 aroD 3-dehydroquinat 27.3 1.5E+02 0.0032 29.3 6.0 59 87-158 67-127 (228)
237 PF01902 ATP_bind_4: ATP-bindi 27.1 1E+02 0.0022 30.9 4.8 59 374-433 123-181 (218)
238 PRK14705 glycogen branching en 27.0 1.1E+02 0.0024 38.1 6.0 51 97-152 765-833 (1224)
239 COG1609 PurR Transcriptional r 26.7 2.1E+02 0.0045 29.8 7.2 106 94-233 98-205 (333)
240 PF00682 HMGL-like: HMGL-like 26.3 1.3E+02 0.0029 29.2 5.4 65 96-178 107-171 (237)
241 cd03319 L-Ala-DL-Glu_epimerase 26.1 59 0.0013 33.3 3.0 57 92-164 236-293 (316)
242 PTZ00398 phosphoenolpyruvate c 26.1 1.2E+02 0.0026 36.9 6.0 121 109-237 616-757 (974)
243 PF00682 HMGL-like: HMGL-like 26.1 4.4E+02 0.0095 25.6 9.0 109 94-231 64-181 (237)
244 COG1060 ThiH Thiamine biosynth 26.0 90 0.0019 33.8 4.5 59 98-156 159-221 (370)
245 PF00070 Pyr_redox: Pyridine n 25.9 1.6E+02 0.0035 23.8 5.0 46 376-428 13-58 (80)
246 TIGR03128 RuMP_HxlA 3-hexulose 25.8 1.6E+02 0.0035 28.1 5.8 43 102-155 68-110 (206)
247 cd00311 TIM Triosephosphate is 25.7 1.3E+02 0.0029 30.5 5.5 44 102-155 76-123 (242)
248 PRK00009 phosphoenolpyruvate c 25.5 99 0.0021 37.4 5.1 102 132-237 581-699 (911)
249 PRK15492 triosephosphate isome 25.4 1.3E+02 0.0027 31.1 5.2 44 102-155 86-133 (260)
250 cd04871 ACT_PSP_2 ACT domains 25.4 63 0.0014 27.3 2.6 49 376-429 16-82 (84)
251 COG1619 LdcA Uncharacterized p 25.4 1.8E+02 0.004 30.9 6.5 87 91-186 20-106 (313)
252 cd00019 AP2Ec AP endonuclease 25.3 1.9E+02 0.0041 28.8 6.4 53 97-151 10-63 (279)
253 cd08179 NADPH_BDH NADPH-depend 25.3 79 0.0017 33.5 3.9 65 93-169 35-99 (375)
254 TIGR00538 hemN oxygen-independ 25.2 1.8E+02 0.004 31.7 6.8 56 100-166 151-216 (455)
255 PF14307 Glyco_tran_WbsX: Glyc 25.0 82 0.0018 33.2 3.9 29 93-121 54-82 (345)
256 PF02548 Pantoate_transf: Keto 24.9 2.6E+02 0.0057 29.1 7.4 77 70-178 72-148 (261)
257 PRK15108 biotin synthase; Prov 24.8 1.9E+02 0.0041 30.7 6.6 53 94-151 76-128 (345)
258 TIGR02351 thiH thiazole biosyn 24.7 90 0.0019 33.2 4.2 45 100-149 162-216 (366)
259 PF04909 Amidohydro_2: Amidohy 24.7 1.5E+02 0.0033 28.3 5.4 97 74-188 70-168 (273)
260 PRK08508 biotin synthase; Prov 24.6 2.1E+02 0.0045 29.3 6.6 53 94-151 40-92 (279)
261 PRK05926 hypothetical protein; 24.6 66 0.0014 34.6 3.2 56 99-154 168-227 (370)
262 cd07937 DRE_TIM_PC_TC_5S Pyruv 24.6 1.8E+02 0.004 29.7 6.2 69 93-177 114-182 (275)
263 PRK05692 hydroxymethylglutaryl 24.5 3.2E+02 0.0069 28.3 8.0 104 100-229 82-197 (287)
264 TIGR03679 arCOG00187 arCOG0018 24.5 1.5E+02 0.0032 29.4 5.4 58 375-433 125-182 (218)
265 PRK13347 coproporphyrinogen II 24.4 2.1E+02 0.0045 31.3 7.0 58 100-166 152-217 (453)
266 PRK13210 putative L-xylulose 5 24.3 1.3E+02 0.0028 29.7 5.0 59 97-157 94-154 (284)
267 TIGR01108 oadA oxaloacetate de 24.2 1.7E+02 0.0038 33.5 6.5 53 94-156 88-140 (582)
268 TIGR02884 spore_pdaA delta-lac 24.1 1.4E+02 0.0029 29.5 5.1 81 376-470 143-223 (224)
269 PRK11858 aksA trans-homoaconit 23.8 2.9E+02 0.0063 29.7 7.8 95 100-229 78-187 (378)
270 PF08267 Meth_synt_1: Cobalami 23.7 1.1E+02 0.0023 32.4 4.5 35 100-148 42-76 (310)
271 TIGR03212 uraD_N-term-dom puta 23.5 65 0.0014 33.6 2.8 29 365-393 70-98 (297)
272 PRK08883 ribulose-phosphate 3- 23.5 1.6E+02 0.0035 29.4 5.5 45 94-146 9-55 (220)
273 smart00518 AP2Ec AP endonuclea 23.4 1.8E+02 0.004 28.7 5.9 53 97-151 10-62 (273)
274 cd02072 Glm_B12_BD B12 binding 23.4 1.2E+02 0.0025 28.3 4.2 32 75-114 81-112 (128)
275 PRK08745 ribulose-phosphate 3- 23.3 1.6E+02 0.0035 29.6 5.4 46 94-147 13-60 (223)
276 cd07381 MPP_CapA CapA and rela 23.3 2.3E+02 0.005 27.7 6.5 57 94-157 159-215 (239)
277 PRK09613 thiH thiamine biosynt 23.2 1.1E+02 0.0023 34.3 4.5 55 100-177 180-250 (469)
278 cd07938 DRE_TIM_HMGL 3-hydroxy 23.2 5.1E+02 0.011 26.6 9.1 100 100-229 76-191 (274)
279 COG1038 PycA Pyruvate carboxyl 23.1 1.9E+02 0.0042 35.0 6.6 61 92-153 652-713 (1149)
280 cd04908 ACT_Bt0572_1 N-termina 23.1 2.7E+02 0.0059 21.7 5.7 56 94-151 10-65 (66)
281 PRK03906 mannonate dehydratase 23.0 1.2E+02 0.0026 33.0 4.8 50 102-155 15-64 (385)
282 PRK08599 coproporphyrinogen II 22.9 1E+02 0.0022 32.5 4.2 50 100-150 100-152 (377)
283 PRK14507 putative bifunctional 22.9 2.4E+02 0.0052 36.6 7.8 63 94-157 755-830 (1693)
284 COG0223 Fmt Methionyl-tRNA for 22.9 1.1E+02 0.0025 32.4 4.5 99 100-216 14-122 (307)
285 TIGR01211 ELP3 histone acetylt 22.9 1E+02 0.0022 34.9 4.4 56 99-155 205-263 (522)
286 cd06416 GH25_Lys1-like Lys-1 i 22.7 1.5E+02 0.0033 28.3 5.0 46 101-153 13-58 (196)
287 cd04241 AAK_FomA-like AAK_FomA 22.6 1.2E+02 0.0026 30.1 4.4 37 125-165 14-51 (252)
288 PF03869 Arc: Arc-like DNA bin 22.6 55 0.0012 25.6 1.6 25 406-430 9-33 (50)
289 TIGR02529 EutJ ethanolamine ut 22.5 2.5E+02 0.0055 28.0 6.7 63 81-155 25-96 (239)
290 PRK03705 glycogen debranching 22.2 8.4E+02 0.018 28.5 11.5 53 102-156 184-264 (658)
291 TIGR01531 glyc_debranch glycog 22.1 2.3E+02 0.005 36.1 7.3 96 81-191 112-229 (1464)
292 TIGR01210 conserved hypothetic 21.9 1.2E+02 0.0027 31.6 4.5 56 100-155 117-176 (313)
293 cd00945 Aldolase_Class_I Class 21.9 1.9E+02 0.0042 26.4 5.4 55 95-151 63-117 (201)
294 PRK15452 putative protease; Pr 21.8 1E+02 0.0022 34.2 3.9 37 75-116 59-95 (443)
295 COG2179 Predicted hydrolase of 21.8 1.7E+02 0.0038 28.9 5.1 56 97-155 14-69 (175)
296 cd06419 GH25_muramidase_2 Unch 21.7 5.4E+02 0.012 25.1 8.6 106 102-235 21-128 (190)
297 PRK04175 rpl7ae 50S ribosomal 21.7 2.3E+02 0.0049 26.0 5.6 45 371-427 32-76 (122)
298 TIGR00542 hxl6Piso_put hexulos 21.6 1.4E+02 0.0031 29.7 4.7 55 97-151 94-150 (279)
299 cd00502 DHQase_I Type I 3-dehy 21.4 3.1E+02 0.0066 26.9 6.9 61 85-160 63-124 (225)
300 COG0826 Collagenase and relate 21.3 2.8E+02 0.0061 29.8 7.1 63 75-162 62-126 (347)
301 PF12017 Tnp_P_element: Transp 21.3 67 0.0014 32.8 2.3 33 130-163 192-224 (236)
302 cd08560 GDPD_EcGlpQ_like_1 Gly 21.1 1.2E+02 0.0027 32.5 4.4 49 99-151 247-295 (356)
303 cd08627 PI-PLCc_gamma1 Catalyt 21.0 82 0.0018 32.2 2.9 30 90-120 23-52 (229)
304 PF02126 PTE: Phosphotriestera 21.0 2.5E+02 0.0053 29.6 6.5 64 95-177 36-99 (308)
305 TIGR00259 thylakoid_BtpA membr 20.8 74 0.0016 32.9 2.5 40 72-120 12-51 (257)
306 PF02219 MTHFR: Methylenetetra 20.8 1.5E+02 0.0033 30.3 4.8 71 99-180 158-236 (287)
307 PRK08446 coproporphyrinogen II 20.7 1.5E+02 0.0032 31.3 4.8 50 100-149 98-149 (350)
308 PF03447 NAD_binding_3: Homose 20.6 87 0.0019 27.2 2.6 57 83-151 59-115 (117)
309 PRK05660 HemN family oxidoredu 20.6 1.5E+02 0.0033 31.6 4.9 51 95-150 102-159 (378)
310 cd07493 Peptidases_S8_9 Peptid 20.6 5.5E+02 0.012 25.3 8.6 71 94-173 88-169 (261)
311 COG2159 Predicted metal-depend 20.5 4.1E+02 0.0088 27.6 7.9 80 98-188 114-196 (293)
312 cd06413 GH25_muramidase_1 Unch 20.5 2.3E+02 0.005 27.1 5.7 107 102-234 16-124 (191)
313 PF07488 Glyco_hydro_67M: Glyc 20.5 2E+02 0.0043 31.0 5.5 58 94-156 54-114 (328)
314 COG1523 PulA Type II secretory 20.5 1.4E+02 0.0031 35.0 5.0 55 98-154 199-283 (697)
315 TIGR00695 uxuA mannonate dehyd 20.3 1.7E+02 0.0036 32.3 5.1 50 102-155 15-64 (394)
316 PRK09856 fructoselysine 3-epim 20.3 1.4E+02 0.003 29.5 4.3 56 96-151 89-146 (275)
317 PRK06052 5-methyltetrahydropte 20.2 2E+02 0.0044 31.1 5.7 82 71-157 108-206 (344)
318 PRK13762 tRNA-modifying enzyme 20.1 5.1E+02 0.011 27.3 8.6 80 77-164 180-267 (322)
No 1
>PLN02803 beta-amylase
Probab=100.00 E-value=1.1e-173 Score=1366.76 Aligned_cols=488 Identities=46% Similarity=0.819 Sum_probs=438.3
Q ss_pred ccccccceecccCcCCCCCCCccccccccCccc-ccccccccccCCCCCCCCCC-----CCCccccccCCCC-CCCCCCc
Q 009981 4 ATFAPSFCCTRTEPTQLPRFRLTHSHKLQSQTR-RLSVSCRLNSSNSLSPADNN-----NNNRYKLHDGASS-QGRRNGS 76 (521)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~v 76 (521)
.++.+.+||+....+.+. .|+..++.. |++.+..+++......+..+ .....+.+++.+. .+..++|
T Consensus 13 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 86 (548)
T PLN02803 13 SPKDTKSLKTPDDFSGTI------CFAPIKPSCYRLQAKNSMQEAQLTHEEIFTPEGRKSENWEKLHALSGPHSKNDSGV 86 (548)
T ss_pred CCcccccccccccccccc------cccCCCCcccccccccccchhhcccCcccCccccccccccccccccCcccccCCce
Confidence 356667777776666544 444444433 44445555543333322211 1112233343322 4678899
Q ss_pred ceEEeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEee
Q 009981 77 PVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAF 156 (521)
Q Consensus 77 pv~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsf 156 (521)
|||||||||+|+++|+|+++++++++|++||++||||||||||||+||+++|++|||++|++|++|||++||||||||||
T Consensus 87 pvyVMlPLd~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSF 166 (548)
T PLN02803 87 PVFVMLPLDTVTMGGNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQVVMSF 166 (548)
T ss_pred eEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCccccChhhhhhhccCCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHhHhhhhh
Q 009981 157 HQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAI 236 (521)
Q Consensus 157 HqCGGNVGDt~~ipLP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~g~v 236 (521)
|||||||||+|+||||+||++++++||||+||||+|+||+||||||||++||++||||+|+|+|||+||+++|++|+++|
T Consensus 167 HqCGGNVGD~~~IpLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~~ 246 (548)
T PLN02803 167 HQCGGNVGDSCSIPLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLGGV 246 (548)
T ss_pred cccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hh--------cCceeecc----------CCCCccccccHHHHHHHHHHHHHhcccccCCCCCCCCCcccCCCCCCCcccc
Q 009981 237 IT--------KLMWSWRS----------RELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEFFRT 298 (521)
Q Consensus 237 I~--------~~eWry~~----------PGiGEFQCYdk~~~~~fr~~a~~~gn~~WG~~gP~~a~~Yn~~P~~t~FF~~ 298 (521)
|+ +||+|||+ |||||||||||||+++||++|+++||++||++||+|+|+||++|++|+||++
T Consensus 247 I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~aA~~~G~p~WG~~gP~dAg~Yn~~P~~t~FF~~ 326 (548)
T PLN02803 247 IAEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEASAEAIGKKDWGRGGPHDAGEYKQFPEETGFFRR 326 (548)
T ss_pred eEEEEeccccCccccCCCCcCcCCCccCCCccceeeccHHHHHHHHHHHHHhCCHhhccCCCCCcCcCCCCCCCCCCCCC
Confidence 87 77777762 9999999999999999999999999999999999999999999999999997
Q ss_pred CCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEecceeccCCCCCChhhhcccccCCCCCCChHHHH
Q 009981 299 DNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTPSHPSELTAGYYNTSTRDGFLPIA 378 (521)
Q Consensus 299 ~~g~~~s~YGrFFL~WYs~~Li~HgdrIL~~A~~~F~~~~v~l~aKv~GIHWwy~t~SHaAElTAGyyN~~~rdGY~~Ia 378 (521)
+|+|+|+||||||+|||++|++||||||+.|+.+|.+++|+|++|||||||||+|+||||||||||||+++||||.||+
T Consensus 327 -~G~~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwY~t~SHaAElTAGyYNt~~rdGY~~Ia 405 (548)
T PLN02803 327 -DGTWNTEYGQFFLEWYSGKLLEHGDRILAAAEGIFQGTGAKLSGKVAGIHWHYRTRSHAAELTAGYYNTRNHDGYLPIA 405 (548)
T ss_pred -CCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEEEeceeeeecCCCCchhhhccccccCCCcccHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHcCcEEEEeecccccCCcCCCCCCCChHHHHHHHHHHHHHcCCCeecccCccccChHHHHHHHHhhcccCCCCCCC
Q 009981 379 RIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYSEGLEKP 458 (521)
Q Consensus 379 ~mf~r~~~~l~fTclEM~d~e~p~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~~~~~~~~ 458 (521)
+|||||||+|+||||||+|.||| ++++|+||+||+||+++|+++||+|+|||||++||.++|+||++++++.. ..+
T Consensus 406 ~mf~rh~~~l~FTClEM~D~eqp-~~~~s~Pe~Lv~Qv~~aa~~~Gv~~aGENAL~~~d~~~~~qi~~~~~~~~---~~~ 481 (548)
T PLN02803 406 RMFSKHGVVLNFTCMEMRDGEQP-EHANCSPEGLVRQVKMATRTAGTELAGENALERYDSAAFAQVVATSRSDS---GNG 481 (548)
T ss_pred HHHHHcCCeEEEEecCcccCCCC-ccccCCHHHHHHHHHHHHHHcCCceeeeccccccCHHHHHHHHHhhcccc---cCc
Confidence 99999999999999999999999 69999999999999999999999999999999999999999999987532 136
Q ss_pred cceeeEecCCccccCCcChHHHHHHHHHhhCCcc--ccccccccCC
Q 009981 459 SFSFNFLRMDKNMFEYHNWVRFTRFVRQLSGSSI--FRAKLDFRGD 502 (521)
Q Consensus 459 ~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~~--~~~~~~~~~~ 502 (521)
|++||||||+++||+++||++|++|||+||++++ .++.++..+.
T Consensus 482 ~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~~~~~~~~~~~~~ 527 (548)
T PLN02803 482 LTAFTYLRMNKRLFEGDNWRQLVEFVKNMSEGGRNRRLPECDTEGS 527 (548)
T ss_pred eeeeEEecCChHHcChhhHHHHHHHHHHhcCccccCccchhhccCc
Confidence 8899999999999999999999999999999876 5677777654
No 2
>PLN00197 beta-amylase; Provisional
Probab=100.00 E-value=4e-173 Score=1365.46 Aligned_cols=473 Identities=46% Similarity=0.859 Sum_probs=437.6
Q ss_pred ccccCccccccc--ccccccCCCCCCCCCCC------C-----C--------------ccccccCCCC--CCCCCCcceE
Q 009981 29 HKLQSQTRRLSV--SCRLNSSNSLSPADNNN------N-----N--------------RYKLHDGASS--QGRRNGSPVF 79 (521)
Q Consensus 29 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~-----~--------------~~~~~~~~~~--~~~~~~vpv~ 79 (521)
|++.+|.+|+++ +.+|+..+....+..+. + . ..++.|..+. .+..++||||
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpvy 109 (573)
T PLN00197 30 AKPPSPRMRCPKAMARNYEQKSQPTSPCMSPILGGMRADLSVACRAFATENDVVTIEEQREEREYRIGGTKEKGKGVPVY 109 (573)
T ss_pred ccCCCCcccccccccchhhhhhcCCCcccCcccccccccchHHHhhhhccccccccccchhhhccccccccccCCCeeEE
Confidence 888999999988 89988876655443211 1 0 0133333322 4678899999
Q ss_pred EeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeecc
Q 009981 80 VKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQC 159 (521)
Q Consensus 80 VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqC 159 (521)
||||||+|+++|+|+++++++++|++||++||||||||||||+||+++|++|||++|++|++|||++|||||||||||||
T Consensus 110 VMLPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~VmSFHqC 189 (573)
T PLN00197 110 VMMPLDSVTMGNTVNRRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQAVMSFHQC 189 (573)
T ss_pred EEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccChhhhhhhccCCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHhHhhhhhhh-
Q 009981 160 GSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIIT- 238 (521)
Q Consensus 160 GGNVGDt~~ipLP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~g~vI~- 238 (521)
||||||+|+||||+||+++++++|||+||||+|+||+||||||||++|||+||||+|+|+|||+||+++|++|++++|+
T Consensus 190 GGNVGD~~~IpLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~e 269 (573)
T PLN00197 190 GGNVGDSCTIPLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLGDTIVE 269 (573)
T ss_pred CCCCCCcccccCCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhcCceeE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred -------cCceeecc----------CCCCccccccHHHHHHHHHHHHHhcccccCCCCCCCCCcccCCCCCCCccccCCC
Q 009981 239 -------KLMWSWRS----------RELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEFFRTDNG 301 (521)
Q Consensus 239 -------~~eWry~~----------PGiGEFQCYdk~~~~~fr~~a~~~gn~~WG~~gP~~a~~Yn~~P~~t~FF~~~~g 301 (521)
+||+|||+ |||||||||||||+++||++|++.||++||++||+++++||+.|++|+||++++|
T Consensus 270 I~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDkyml~~L~~aA~~~G~p~WG~~gP~dAg~Yn~~P~~t~FF~~~gG 349 (573)
T PLN00197 270 IQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAEAAGKPEWGSTGPTDAGHYNNWPEDTRFFKKEGG 349 (573)
T ss_pred EEeccCcCccccCCCCcCcCCCcCCCCccceeechHHHHHHHHHHHHHhCCHhhcCCCCCCccccCCCCCCCCCCCCCCC
Confidence 77777762 9999999999999999999999999999999999999999999999999997678
Q ss_pred CccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEecceeccCCCCCChhhhcccccCCCCCCChHHHHHHH
Q 009981 302 LWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTPSHPSELTAGYYNTSTRDGFLPIARIF 381 (521)
Q Consensus 302 ~~~s~YGrFFL~WYs~~Li~HgdrIL~~A~~~F~~~~v~l~aKv~GIHWwy~t~SHaAElTAGyyN~~~rdGY~~Ia~mf 381 (521)
+|+|+||||||+|||++|++||||||+.|+.+|++++|+|++|||||||||+|+||||||||||||+++||||.|||+||
T Consensus 350 ~w~S~YG~FFL~WYS~~Ll~HGDrVL~~A~~~F~g~~v~l~aKVaGIHWwY~t~SHAAELTAGyYNt~~rDGY~~Ia~mf 429 (573)
T PLN00197 350 GWNSPYGEFFLSWYSQMLLDHGERILSSAKSIFENTGVKISVKIAGIHWHYGTRSHAPELTAGYYNTRFRDGYLPIAQML 429 (573)
T ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccceeecCCCCchHhhccccccCCCcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHcCcEEEEeecccccCCcCCCCCCCChHHHHHHHHHHHHHcCCCeecccCccccChHHHHHHHHhhcccCCC--CCCCc
Q 009981 382 GRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYSEG--LEKPS 459 (521)
Q Consensus 382 ~r~~~~l~fTclEM~d~e~p~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~~~~--~~~~~ 459 (521)
|||||+|+||||||+|.+|| ++++|+||+||+||+++|+++||+|+|||||+|||.++|+||+++++...++ ...+|
T Consensus 430 arh~~~l~FTClEM~D~eqp-~~a~s~PE~Lv~QV~~aA~~~Gv~vaGENAL~r~D~~~~~qI~~~~~~~~~~~~~~~~l 508 (573)
T PLN00197 430 ARHGAIFNFTCIEMRDHEQP-QDALCAPEKLVRQVALATREAEVPLAGENALPRYDDYAHEQILQASSLNIDGNSEDREM 508 (573)
T ss_pred HHcCCeEEEEecCcccCCCC-ccccCCHHHHHHHHHHHHHHcCCcEeeeccccccChhHHHHHHHhcccccCCCcccCce
Confidence 99999999999999999999 6999999999999999999999999999999999999999999997654432 33679
Q ss_pred ceeeEecCCccccCCcChHHHHHHHHHhhCCccc--cccccccCC
Q 009981 460 FSFNFLRMDKNMFEYHNWVRFTRFVRQLSGSSIF--RAKLDFRGD 502 (521)
Q Consensus 460 ~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~~~--~~~~~~~~~ 502 (521)
++||||||++.||+++||++|++|||+||++... +++++.++-
T Consensus 509 ~~FTYlRm~~~lf~~~n~~~F~~FVr~M~~~~~~~~~~~~~~~~~ 553 (573)
T PLN00197 509 CAFTYLRMNPHLFQPDNWRRFVAFVKKMKEGKDSHRCREQVEREA 553 (573)
T ss_pred eeEEEeCCChHHcChhhHHHHHHHHHHhcCCCCCCccchhcchhc
Confidence 9999999999999999999999999999999764 666666554
No 3
>PLN02801 beta-amylase
Probab=100.00 E-value=4.6e-168 Score=1319.03 Aligned_cols=422 Identities=39% Similarity=0.740 Sum_probs=405.2
Q ss_pred CCCCCCcceEEeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCc
Q 009981 70 QGRRNGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLK 149 (521)
Q Consensus 70 ~~~~~~vpv~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLK 149 (521)
.+..++||||||||||+|+++|+|+++++++++|++||++||||||||||||+||+++|++|||++|++|++|||++|||
T Consensus 10 ~~~~~~vpvyVMlPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLK 89 (517)
T PLN02801 10 KMLANYVPVYVMLPLGVVTADNVLEDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLK 89 (517)
T ss_pred cccCCceeEEEeeecceecCCCccCCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeccCCCCCCCCccccChhhhhhhccCCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHH
Q 009981 150 VRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTF 229 (521)
Q Consensus 150 v~~vlsfHqCGGNVGDt~~ipLP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~f 229 (521)
||||||||||||||||+|+||||+||+++++++|||+||||+|+||+||||||||++||++||||+|+|+|||+||+++|
T Consensus 90 lq~vmSFHqCGGNVGD~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F 169 (517)
T PLN02801 90 IQAIMSFHQCGGNVGDAVNIPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENM 169 (517)
T ss_pred EEEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhh-hhh--------cCceeecc---------CCCCccccccHHHHHHHHHHHHHhcccccCCCCCCCCCcccCCCC
Q 009981 230 RPLLGA-IIT--------KLMWSWRS---------RELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPE 291 (521)
Q Consensus 230 a~~~g~-vI~--------~~eWry~~---------PGiGEFQCYdk~~~~~fr~~a~~~gn~~WG~~gP~~a~~Yn~~P~ 291 (521)
++++++ ||+ +||+|||+ |||||||||||||+++||++|+++||++||+ |+++++||++|+
T Consensus 170 ~~~l~~~~I~eI~VGlGP~GELRYPSYp~~~gW~fpGiGEFQCYDky~~~~l~~aA~~~G~p~Wg~--P~dag~Yn~~P~ 247 (517)
T PLN02801 170 ADFLEAGVIIDIEVGLGPAGELRYPSYPETQGWVFPGIGEFQCYDKYLKADFKEAATEAGHPEWEL--PDDAGEYNDTPE 247 (517)
T ss_pred HHhccCCeeEEEEEcccccccccCCCCcCCCCCCCCCcceeeeccHHHHHHHHHHHHhcCCcccCC--CCCCCcccCCCC
Confidence 999974 776 78888873 8999999999999999999999999999995 999999999999
Q ss_pred CCCccccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEecceeccCCCCCChhhhcccccCCCCC
Q 009981 292 HTEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTPSHPSELTAGYYNTSTR 371 (521)
Q Consensus 292 ~t~FF~~~~g~~~s~YGrFFL~WYs~~Li~HgdrIL~~A~~~F~~~~v~l~aKv~GIHWwy~t~SHaAElTAGyyN~~~r 371 (521)
+|+||++ +|+|+|+||||||+|||++|++||||||++|+++|.+++|+|++|||||||||+|+||||||||||||+++|
T Consensus 248 ~t~FF~~-~G~~~s~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKvaGIHWwY~t~SHaAElTAGyYN~~~r 326 (517)
T PLN02801 248 DTGFFKS-NGTYLTEEGKFFLTWYSNKLLLHGDQILDEANKAFLGCKVKLAAKVSGIHWWYKHHSHAAELTAGYYNLKGR 326 (517)
T ss_pred CCCCCCC-CCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeceeeeecCCCCchHhhccccccCCCc
Confidence 9999997 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhHcCcEEEEeecccccCCcCCCCCCCChHHHHHHHHHHHHHcCCCeecccCccccChHHHHHHHHhhccc
Q 009981 372 DGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFY 451 (521)
Q Consensus 372 dGY~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~ 451 (521)
|||.|||+|||||+|+|+||||||+|++|| ++++|+||+||+||+++|+++||+|+|||||+|||.++|+||+++++++
T Consensus 327 DGY~pIa~m~~rh~~~l~FTClEM~D~eq~-~~~~s~PE~Lv~QV~~aa~~~Gv~vaGENAL~~~D~~~y~qi~~~a~~~ 405 (517)
T PLN02801 327 DGYRPIARMLSRHYGILNFTCLEMRDTEQP-AEALSAPQELVQQVLSGAWREGIEVAGENALSRYDRRGYNQILLNARPN 405 (517)
T ss_pred cchHHHHHHHHHcCCeEEEeecccccCCCC-cccCCCHHHHHHHHHHHHHHcCCcEeeeccccccCHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999 7999999999999999999999999999999999999999999999865
Q ss_pred CCC----CCCCcceeeEecCCccccCCcChHHHHHHHHHhhCCccccc
Q 009981 452 SEG----LEKPSFSFNFLRMDKNMFEYHNWVRFTRFVRQLSGSSIFRA 495 (521)
Q Consensus 452 ~~~----~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~~~~~ 495 (521)
+.+ ...+|++||||||++.||+++||++|++|||+||++.+.-+
T Consensus 406 ~~~~~g~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~~~~ 453 (517)
T PLN02801 406 GVNKDGKPKLRMFGVTYLRLSDELLEETNFSLFKTFVRKMHADQDYCP 453 (517)
T ss_pred cCCcccccccceeeEEEecCchHhcCcchHHHHHHHHHHhccccccCC
Confidence 422 22468999999999999999999999999999998766533
No 4
>PLN02161 beta-amylase
Probab=100.00 E-value=2.8e-167 Score=1312.37 Aligned_cols=417 Identities=39% Similarity=0.693 Sum_probs=401.0
Q ss_pred CCCCCCcceEEeeecceecCCC----eecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHH
Q 009981 70 QGRRNGSPVFVKLPEDSTMIGG----KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASN 145 (521)
Q Consensus 70 ~~~~~~vpv~VMlPLd~v~~~~----~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~ 145 (521)
....++||||||||||+|+.++ +|+++++|+++|++||++||||||||||||+||+++|++|||++|++|++|||+
T Consensus 86 ~~~~~~vpvyVMlPLD~V~~~~~~~~~v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~ 165 (531)
T PLN02161 86 SSRHKRVPVFVMMPVDTFGIDASGCPKIKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLISE 165 (531)
T ss_pred cccCCCeeEEEEeecceeccCcccccccCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHHH
Confidence 4678899999999999999764 899999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeeeccCCCCCCCCccccChhhhhhhccCCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHH
Q 009981 146 CGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNF 225 (521)
Q Consensus 146 ~GLKv~~vlsfHqCGGNVGDt~~ipLP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF 225 (521)
+|||||||||||||||||||+|+||||+||++++++||||+||||+|+||+||||||||++||++||||+|+|+|||+||
T Consensus 166 ~GLKlq~vmSFHqCGGNvGd~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SF 245 (531)
T PLN02161 166 AGLKLHVALCFHSNMHLFGGKGGISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSF 245 (531)
T ss_pred cCCeEEEEEEecccCCCCCCccCccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhhhhhh--------cCceeecc----------CCCCccccccHHHHHHHHHHHHHhcccccCCCCCCCCCccc
Q 009981 226 RDTFRPLLGAIIT--------KLMWSWRS----------RELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLM 287 (521)
Q Consensus 226 ~~~fa~~~g~vI~--------~~eWry~~----------PGiGEFQCYdk~~~~~fr~~a~~~gn~~WG~~gP~~a~~Yn 287 (521)
+++|++|+++||+ +||+|||+ |||||||||||||+++||++|+++||++||++||+|++.||
T Consensus 246 r~~F~~~~~~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~~A~~~G~p~WG~~gP~dAg~Yn 325 (531)
T PLN02161 246 STKFEPYIGNVIEEISIGLGPSGELRYPAHPSGDGRWKFPGIGEFQCHDKYMMEDLMAVASQEGKPQWGSRDPPNTGCYN 325 (531)
T ss_pred HHHHHHHhcCceEEEEeccccCccccCCCCcCcCCCccCCCcceeeeccHHHHHHHHHHHHHhCCHhhccCCCCCCcccC
Confidence 9999999988887 67777762 99999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcC------CCceEEEEecceeccCCCCCChhhh
Q 009981 288 QDPEHTEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRG------TRVNTSAKVGGIHWHYGTPSHPSEL 361 (521)
Q Consensus 288 ~~P~~t~FF~~~~g~~~s~YGrFFL~WYs~~Li~HgdrIL~~A~~~F~~------~~v~l~aKv~GIHWwy~t~SHaAEl 361 (521)
+.|++|+||++++|+|+|+||||||+|||++|++||||||++|+.+|.+ ++|+|++|||||||||+|+||||||
T Consensus 326 ~~P~~t~FF~~~~gs~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~~~~~~~~~~v~l~aKv~GIHWwY~t~SHaAEl 405 (531)
T PLN02161 326 SFPSGVPFFEEGNDSFLSDYGRFFLEWYSGKLICHADAILAKAADVLRRRQESEKSSVMLVAKIGGIYWWYKTSSHPAEL 405 (531)
T ss_pred CCCCCCCCCcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcceEEEEeccccccCCCCCchhhh
Confidence 9999999999877889999999999999999999999999999999964 6899999999999999999999999
Q ss_pred cccccCCCCCCChHHHHHHHhHcCcEEEEeecccccCCcCCCCCCCChHHHHHHHHHHHHHcCCCeecccCccccChHHH
Q 009981 362 TAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAF 441 (521)
Q Consensus 362 TAGyyN~~~rdGY~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~d~~~~ 441 (521)
||||||+++||||.|||+|||||||+|+||||||+|.||| +++.|+||+||+||+++|+++||+|+|||||++||..+|
T Consensus 406 TAGyYN~~~rDGY~~Ia~m~~rh~~~l~FTClEM~D~eq~-~~~~s~Pe~Lv~QV~~aa~~~Gv~~aGENAL~~~D~~~~ 484 (531)
T PLN02161 406 TAGYYNTALRDGYDPVASVLSRHGAALHIPCLDMADSETP-EKYLCSPEGLRQQIHDVSKKWTIHVTGRNTSERFDEMGL 484 (531)
T ss_pred ccccccCCcccchHHHHHHHHHcCceEEEEeccccCCCCC-ccccCCHHHHHHHHHHHHHHcCCceeecccccccChhHH
Confidence 9999999999999999999999999999999999999999 799999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCCCCcceeeEecCCccccCCcChHHHHHHHHHhhCC
Q 009981 442 QQVIKMSKFYSEGLEKPSFSFNFLRMDKNMFEYHNWVRFTRFVRQLSGS 490 (521)
Q Consensus 442 ~qi~~~~~~~~~~~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~ 490 (521)
+||+++++.. ...+|.+||||||+++||+++||++|++|||+||++
T Consensus 485 ~qi~~n~~~~---~~~~l~~FTylRm~~~lf~~~n~~~F~~FVr~M~~~ 530 (531)
T PLN02161 485 RQIRENCVQP---NGDTLRSFTFCRMNEKIFRAENWNNFVPFIRQMSAD 530 (531)
T ss_pred HHHHHHhcCC---CCCceeeEEEEcCChhhcChhhHHHHHHHHHHhhCC
Confidence 9999998432 224688999999999999999999999999999985
No 5
>PLN02905 beta-amylase
Probab=100.00 E-value=6.2e-167 Score=1328.18 Aligned_cols=416 Identities=35% Similarity=0.685 Sum_probs=401.9
Q ss_pred CCCCCcceEEeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcE
Q 009981 71 GRRNGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKV 150 (521)
Q Consensus 71 ~~~~~vpv~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv 150 (521)
..+++||||||||||+|+++|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++|++|||++||||
T Consensus 260 ~~~~~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKl 339 (702)
T PLN02905 260 AGTPYVPVYVMLPLGVINMKCELADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKL 339 (702)
T ss_pred cCCCceeEEEEeecceecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeccCCCCCCCCccccChhhhhhhccCCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHh
Q 009981 151 RALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFR 230 (521)
Q Consensus 151 ~~vlsfHqCGGNVGDt~~ipLP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa 230 (521)
|||||||||||||||+|+||||+||+++++++|||+||||+|+||+||||||+|++|||+||||+|+|+|||+||+++|+
T Consensus 340 qvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~ 419 (702)
T PLN02905 340 QVVMSFHECGGNVGDDVCIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFD 419 (702)
T ss_pred EEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhh-hhh--------cCceeecc---------CCCCccccccHHHHHHHHHHHHHhcccccCCCCCCCCCcccCCCCC
Q 009981 231 PLLGA-IIT--------KLMWSWRS---------RELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEH 292 (521)
Q Consensus 231 ~~~g~-vI~--------~~eWry~~---------PGiGEFQCYdk~~~~~fr~~a~~~gn~~WG~~gP~~a~~Yn~~P~~ 292 (521)
+|+++ ||+ +||+|||+ |||||||||||||+++||++|+++||++||+ ||+++++||++|++
T Consensus 420 ~fl~~g~I~eI~VGLGPaGELRYPSYp~s~GW~fPGiGEFQCYDKymla~Lk~aA~a~GhpeWG~-gP~dAG~YN~~P~~ 498 (702)
T PLN02905 420 EFFEDGVISMVEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYLLKSLRKAAEARGHLFWAR-GPDNTGSYNSQPHE 498 (702)
T ss_pred HHhcCCceEEEEeccCCCccccCCCCcCcCCCCCCCcceeeeccHHHHHHHHHHHHHhCcHhhcc-CCCCCCccCCCCCC
Confidence 99976 777 78888873 8999999999999999999999999999998 89999999999999
Q ss_pred CCccccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEecceeccCCCCCChhhhcccccCCCCCC
Q 009981 293 TEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTPSHPSELTAGYYNTSTRD 372 (521)
Q Consensus 293 t~FF~~~~g~~~s~YGrFFL~WYs~~Li~HgdrIL~~A~~~F~~~~v~l~aKv~GIHWwy~t~SHaAElTAGyyN~~~rd 372 (521)
|+||++ +|+|+|+||||||+|||++|++||||||++|+.+|.+ ++|++|||||||||+|+||||||||||||+++||
T Consensus 499 TgFF~~-~Gsw~S~YGkFFLsWYS~~Ll~HGDrVLs~A~~vF~g--~~LaaKVaGIHWWY~t~SHAAELTAGYYNt~~rD 575 (702)
T PLN02905 499 TGFFCD-GGDYDGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIAAKLPGVHWWYKTASHAAELTAGFYNPCNRD 575 (702)
T ss_pred CCCCCC-CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CeEEEEeccccccCCCCCchHhhccccccCCCcc
Confidence 999997 5899999999999999999999999999999999975 6999999999999999999999999999999999
Q ss_pred ChHHHHHHHhHcCcEEEEeecccccCCcCC--CCCCCChHHHHHHHHHHHHHcCCCeecccCccccChHHHHHHHHhhcc
Q 009981 373 GFLPIARIFGRYGFTLCCSCFEMRDVDEKQ--MNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKF 450 (521)
Q Consensus 373 GY~~Ia~mf~r~~~~l~fTclEM~d~e~p~--~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~ 450 (521)
||.|||+|||||+|+|+||||||+|.+||+ ++++|+||+||+||+++||++||+|+|||||++||.++|+||++++++
T Consensus 576 GY~pIa~mfarh~~~l~FTClEM~D~eqp~~~~~a~ssPE~LV~QV~~aA~~~GV~vaGENAL~r~D~~ay~qI~~na~~ 655 (702)
T PLN02905 576 GYAAIASMLKKHGAALNFVCGEVQMLNRPDDFSEALGDPEGLAWQVLNAAWDVDTPVASENSLPCHDRVGYNKILENAKP 655 (702)
T ss_pred cHHHHHHHHHHcCCeEEEEecccccCCCCCccccccCCHHHHHHHHHHHHHHhCCceeccccccccCHHHHHHHHHHhhc
Confidence 999999999999999999999999999983 378999999999999999999999999999999999999999999988
Q ss_pred cCCCCCCCcceeeEecCCccccCCcChHHHHHHHHHhhCC
Q 009981 451 YSEGLEKPSFSFNFLRMDKNMFEYHNWVRFTRFVRQLSGS 490 (521)
Q Consensus 451 ~~~~~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~ 490 (521)
++++...+|.+||||||++.||+++||++|++|||+||++
T Consensus 656 ~~~~~~~~l~~FTYLRm~~~lf~~~nf~~F~~FVr~M~~~ 695 (702)
T PLN02905 656 LNDPDGRHFSSFTYLRLSPLLMERHNFVEFERFVKRMHGE 695 (702)
T ss_pred ccCCccCceeeeEEecCchhhcCcchHHHHHHHHHHhccc
Confidence 7655556799999999999999999999999999999987
No 6
>PLN02705 beta-amylase
Probab=100.00 E-value=1e-165 Score=1315.97 Aligned_cols=416 Identities=31% Similarity=0.545 Sum_probs=402.1
Q ss_pred CCCCCcceEEeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcE
Q 009981 71 GRRNGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKV 150 (521)
Q Consensus 71 ~~~~~vpv~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv 150 (521)
...++||||||||||+|+++|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++|++|||++||||
T Consensus 242 ~~~~~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKl 321 (681)
T PLN02705 242 TETFYVPVYVMLAVGIINNFCQLVDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKL 321 (681)
T ss_pred CCCCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 45667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeccCCCCCCCCccccChhhhhhhccCCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHh
Q 009981 151 RALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFR 230 (521)
Q Consensus 151 ~~vlsfHqCGGNVGDt~~ipLP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa 230 (521)
|||||||||||||||+|+||||+||+++++++|||+||||+|+||+||||||+|++|||+||||+|+|+|||+||+++|+
T Consensus 322 qvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~ 401 (681)
T PLN02705 322 QVVMAFHEYGGNASGNVMISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFD 401 (681)
T ss_pred EEEEEeeccCCCCCCcccccCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhh-hhh--------cCceeecc---------CCCCccccccHHHHHHHHHHHHHhcccccCCCCCCCCCcccCCCCC
Q 009981 231 PLLGA-IIT--------KLMWSWRS---------RELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEH 292 (521)
Q Consensus 231 ~~~g~-vI~--------~~eWry~~---------PGiGEFQCYdk~~~~~fr~~a~~~gn~~WG~~gP~~a~~Yn~~P~~ 292 (521)
+|+++ ||+ +||+|||+ |||||||||||||+++|+++|+++||++||+ ||+++++||++|++
T Consensus 402 ~fl~~g~I~eI~VGLGP~GELRYPSYp~~~gW~fPGiGEFQCYDkymla~Lk~aA~a~GhpeWG~-gP~dAg~YN~~P~~ 480 (681)
T PLN02705 402 DLFVEGLITAVEIGLGASGELKYPSFPERMGWIYPGIGEFQCYDKYSQQNLRKAAKSRGHSFWAR-GPDNAGQYNSRPHE 480 (681)
T ss_pred HhccCCceeEEEeccCCCccccCCCCcccCCCCCCCcceeeeccHHHHHHHHHHHHHhCcHhhcc-CCCCccccCCCCCC
Confidence 99976 777 78888873 8999999999999999999999999999998 89999999999999
Q ss_pred CCccccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEecceeccCCCCCChhhhcccccCCCCCC
Q 009981 293 TEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTPSHPSELTAGYYNTSTRD 372 (521)
Q Consensus 293 t~FF~~~~g~~~s~YGrFFL~WYs~~Li~HgdrIL~~A~~~F~~~~v~l~aKv~GIHWwy~t~SHaAElTAGyyN~~~rd 372 (521)
|+||++ +|+|+|+||||||+|||++|++||||||++|+.+|++ ++|++|||||||||+|+||||||||||||+++||
T Consensus 481 tgFF~~-~G~w~S~YGkFFLsWYS~~Ll~HGDrVLs~A~~vF~~--~~LsaKVaGIHWWY~t~SHAAELTAGYYNt~~rD 557 (681)
T PLN02705 481 TGFFCE-RGDYDSYYGRFFLHWYSQLLIDHADNVLSLANLAFEE--TKIIVKIPAVYWWYKTASHAAELTAGYYNPTNQD 557 (681)
T ss_pred CCCCCC-CCCcccccchHHHHHHHHHHHHHHHHHHHHHHHhcCC--CeEEEEeccccccCCCCCchhhhccccccCCCcc
Confidence 999998 5789999999999999999999999999999999975 7999999999999999999999999999999999
Q ss_pred ChHHHHHHHhHcCcEEEEeecccccCCc-CCCCCCCChHHHHHHHHHHHHHcCCCeecccCccccChHHHHHHHHhhccc
Q 009981 373 GFLPIARIFGRYGFTLCCSCFEMRDVDE-KQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFY 451 (521)
Q Consensus 373 GY~~Ia~mf~r~~~~l~fTclEM~d~e~-p~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~ 451 (521)
||.|||+|||||+|+|+|||+||+|.++ | .+++|+||+||+||+++|+++||+|+|||||++||.++|+||++|+++.
T Consensus 558 GY~pIa~mfarh~~~l~FTC~eMe~~d~~~-~~a~s~PE~LV~QV~~aA~~~Gv~vaGENAL~~~D~~ay~qI~~na~~~ 636 (681)
T PLN02705 558 GYSPVFETLKKHSVTVKFVCSGLQMSPNEN-DEALADPEGLSWQVLNSAWDRGLTVAGENAITCYDREGCMRLIEIAKPR 636 (681)
T ss_pred cHHHHHHHHHHcCceEEEEeccccccCCCC-CccCCCHHHHHHHHHHHHHHcCCceeecccccccCHHHHHHHHHHhccc
Confidence 9999999999999999999999999996 6 6899999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCcceeeEecCCccccCCcChHHHHHHHHHhhCCc
Q 009981 452 SEGLEKPSFSFNFLRMDKNMFEYHNWVRFTRFVRQLSGSS 491 (521)
Q Consensus 452 ~~~~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~ 491 (521)
+++...+|++||||||++.||+++||++|++|||+||++.
T Consensus 637 ~~~~~~~~~~FTYlRm~~~lf~~~n~~~F~~FVr~M~~~~ 676 (681)
T PLN02705 637 NHPDHYHFSFFVYQQPSPLVQGTTCFPELDYFIKCMHGDI 676 (681)
T ss_pred CCCcccceeeeEEecCchHhcCcccHHHHHHHHHHhcccc
Confidence 7666678999999999999999999999999999999764
No 7
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=100.00 E-value=2.1e-146 Score=1136.55 Aligned_cols=376 Identities=50% Similarity=0.933 Sum_probs=320.0
Q ss_pred EEeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeec
Q 009981 79 FVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQ 158 (521)
Q Consensus 79 ~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHq 158 (521)
|||||||+|+++++++ +++++|++||++||+|||||||||+||+++|++|||++|++|++|||++||||||||||||
T Consensus 1 yVmlPLd~v~~~~~~~---~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~vmsfH~ 77 (402)
T PF01373_consen 1 YVMLPLDTVTDDNDWN---ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQVVMSFHQ 77 (402)
T ss_dssp EEE--TTSSCTTSECH---HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEEEEE-S-
T ss_pred CceeeeeeecCCCcHH---HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 8999999999988776 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCccccChhhhhhhccCCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHhHhhhhhhh
Q 009981 159 CGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIIT 238 (521)
Q Consensus 159 CGGNVGDt~~ipLP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~g~vI~ 238 (521)
|||||||+|+||||.||+++++++ ||+||||+|+||+|||| ||++||| +|+|+|||+||+++|++++ ++|+
T Consensus 78 cGgNvgD~~~IpLP~Wv~~~~~~~-di~ytd~~G~rn~E~lS------p~~~grt-~~~Y~dfm~sF~~~f~~~~-~~I~ 148 (402)
T PF01373_consen 78 CGGNVGDDCNIPLPSWVWEIGKKD-DIFYTDRSGNRNKEYLS------PVLDGRT-LQCYSDFMRSFRDNFSDYL-STIT 148 (402)
T ss_dssp BSSSTTSSSEB-S-HHHHHHHHHS-GGEEE-TTS-EEEEEE-------CTBTTBC-HHHHHHHHHHHHHHCHHHH-TGEE
T ss_pred CCCCCCCccCCcCCHHHHhccccC-CcEEECCCCCcCcceee------cccCCch-HHHHHHHHHHHHHHHHHHH-hhhe
Confidence 999999999999999999999999 99999999999999999 9999999 9999999999999999999 7776
Q ss_pred --------cCceeecc---------CCCCccccccHHHHHHHHHHHH------HhcccccCCCCCCCCCcccCCCCCCCc
Q 009981 239 --------KLMWSWRS---------RELGEFQCYDKYMLASLNACAR------EIGMREWGDGGPIGASNLMQDPEHTEF 295 (521)
Q Consensus 239 --------~~eWry~~---------PGiGEFQCYdk~~~~~fr~~a~------~~gn~~WG~~gP~~a~~Yn~~P~~t~F 295 (521)
+||+|||+ |||||||||||||+++||++|+ ..+|++||++||+++ ||++|++++|
T Consensus 149 ~I~vglGP~GELRYPSy~~~~gw~~pgiGeFQcYDk~~~~~l~~~a~~kyg~~~~~~~~Wg~~gp~~~--y~~~P~~t~f 226 (402)
T PF01373_consen 149 EIQVGLGPAGELRYPSYPESDGWRFPGIGEFQCYDKYMLASLRAAAEAKYGSLGAGNPAWGLSGPHDA--YNSPPEDTGF 226 (402)
T ss_dssp EEEE--SGGGBSS-S-S-GGGTB-TTS-----B-SHHHHHHHHHHHHHHTTCCTCTCTTHTS-SSSGG--TT-SGGGSTT
T ss_pred EEEeccCCcceeccCCCCCCCCCcCCCcceeeeccHHHHHHHHHHHHHhhhhhccccccCCCCCCChh--hcCCCCCCCC
Confidence 78888873 9999999999999999999999 678999999999998 9999999999
Q ss_pred cccCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCC-CceEEEEecceeccCC--CCCChhhhcccccCCCCCC
Q 009981 296 FRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGT-RVNTSAKVGGIHWHYG--TPSHPSELTAGYYNTSTRD 372 (521)
Q Consensus 296 F~~~~g~~~s~YGrFFL~WYs~~Li~HgdrIL~~A~~~F~~~-~v~l~aKv~GIHWwy~--t~SHaAElTAGyyN~~~rd 372 (521)
|++ +|+|+|+||||||+|||++|++||||||++|+.+|+++ +|+|++|||||||||+ |+||||||||||||
T Consensus 227 F~~-~G~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~~v~l~aKv~GIHWwy~~pt~sHaAElTAGyyN----- 300 (402)
T PF01373_consen 227 FRD-NGSWDSPYGKFFLSWYSGMLIDHGDRVLSLARSVFDGTFGVKLSAKVPGIHWWYNSPTRSHAAELTAGYYN----- 300 (402)
T ss_dssp TST-TCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHS-EEEEEEE---TTTTSTSTTTHHHHHHT-S------
T ss_pred ccc-CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecceeeccCCCCCCChHHHhccccC-----
Confidence 997 57899999999999999999999999999999999998 9999999999999999 88999999999999
Q ss_pred ChHHHHHHHhHcCcEEEEeecccccCCcCCCCCCCChHHHHHHHHHHHHHcCCCeecccCccccChHHHHHHHHhhcccC
Q 009981 373 GFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYS 452 (521)
Q Consensus 373 GY~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~~ 452 (521)
|+||++|||||+|+|+||||||+|.+++ +.+|+||+||+||+++|+++||+|+|||||++||+++|+||+++++..
T Consensus 301 -Y~~Ia~mf~kh~~~l~fTClEM~d~~~~--p~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~~~- 376 (402)
T PF01373_consen 301 -YSPIARMFKKHGVTLNFTCLEMRDSEEQ--PEYSSPEGLVRQVLNAAWRHGVPVAGENALPRYDNGAYNQILENAKGY- 376 (402)
T ss_dssp -SHHHHHHHHTTT-EEEES-TT--GGSGS--CGGG-HHHHHHHHHHHHHHTT-EEEEE-SS---SHHHHHHHHHHHTHT-
T ss_pred -HHHHHHHHHHcCcEEEEEeccccCCCCC--CCCCCHHHHHHHHHHHHHHcCCCEeeeeCccccCHHHHHHHHHHhhcc-
Confidence 9999999999999999999999999543 236899999999999999999999999999999999999999998543
Q ss_pred CCCCCCcceeeEecCCccccCCcChHHHHHH
Q 009981 453 EGLEKPSFSFNFLRMDKNMFEYHNWVRFTRF 483 (521)
Q Consensus 453 ~~~~~~~~~FTylRm~~~lf~~~n~~~F~~F 483 (521)
+.. +||||||++.||+++||++|++|
T Consensus 377 -~~~----gFTyLRm~~~lf~~~n~~~F~~F 402 (402)
T PF01373_consen 377 -NYS----GFTYLRMGDVLFEGDNWSRFVRF 402 (402)
T ss_dssp -TTT----SEEES-HCHHHHSHHHHHHHHHH
T ss_pred -CCC----CeEEEccChHhcCcccHHhccCC
Confidence 233 79999999999999999999998
No 8
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.94 E-value=5.8e-27 Score=241.52 Aligned_cols=209 Identities=20% Similarity=0.327 Sum_probs=155.0
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeee-eeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccCh
Q 009981 95 RRKAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQ 173 (521)
Q Consensus 95 ~~~~~~~dL~~LK~aGVdgV~vdVw-WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~ 173 (521)
+++.|++||+.||++|++.|+|.++ |..+||+ ||+|||+++|+++++++++||||+ |++ ++.+.|.
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~-eG~ydF~~lD~~l~~a~~~Gi~vi--L~~----------~~~~~P~ 74 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPE-EGQYDFSWLDRVLDLAAKHGIKVI--LGT----------PTAAPPA 74 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SB-TTB---HHHHHHHHHHHCTT-EEE--EEE----------CTTTS-H
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEechhhccCC-CCeeecHHHHHHHHHHHhccCeEE--EEe----------ccccccc
Confidence 5589999999999999999999887 9999998 999999999999999999999985 884 6788999
Q ss_pred hhhhhhccCCCeeeeCCCCccc------ccccccccCcccccCCCCchHHHHHHHHHHHHHHhHhhhh---hhhcCceee
Q 009981 174 WVLEEIDKDPDLAYSDRFGRRN------MEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA---IITKLMWSW 244 (521)
Q Consensus 174 WV~~~~~k~PDI~~tD~~G~r~------~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~g~---vI~~~eWry 244 (521)
||.+ ++||++.+|++|.+. +-|++ .+.|+++++.|.++++++|++ ||. |+.
T Consensus 75 Wl~~---~~Pe~~~~~~~g~~~~~g~~~~~~~~--------------~p~yr~~~~~~~~~l~~~y~~~p~vi~---~~i 134 (374)
T PF02449_consen 75 WLYD---KYPEILPVDADGRRRGFGSRQHYCPN--------------SPAYREYARRFIRALAERYGDHPAVIG---WQI 134 (374)
T ss_dssp HHHC---CSGCCC-B-TTTSBEECCCSTT-HCC--------------HHHHHHHHHHHHHHHHHHHTTTTTEEE---EEE
T ss_pred chhh---hcccccccCCCCCcCccCCccccchh--------------HHHHHHHHHHHHHHHHhhccccceEEE---EEe
Confidence 9988 899999999998763 23333 489999999999999999986 666 333
Q ss_pred c-cCCCCccccccHHHHHHHHHHHHH------hcccccCCCCCCCCCcccC-----CCCCCCccccCCCCccchhhhhHH
Q 009981 245 R-SRELGEFQCYDKYMLASLNACARE------IGMREWGDGGPIGASNLMQ-----DPEHTEFFRTDNGLWNTAYGNFFL 312 (521)
Q Consensus 245 ~-~PGiGEFQCYdk~~~~~fr~~a~~------~gn~~WG~~gP~~a~~Yn~-----~P~~t~FF~~~~g~~~s~YGrFFL 312 (521)
. |||.+ .|||+.|++.|++||++ ++|.+||+. +|+++|.+ +|..+.... +++...||-||..
T Consensus 135 ~NE~~~~--~~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~--~ws~~~~~f~~v~~P~~~~~~~--~~~~~~D~~rF~~ 208 (374)
T PF02449_consen 135 DNEPGYH--RCYSPACQAAFRQWLKEKYGTIEALNRAWGTA--FWSQRYSSFDEVPPPRPTSSPE--NPAQWLDWYRFQS 208 (374)
T ss_dssp CCSTTCT--S--SHHHHHHHHHHHHHHHSSHHHHHHHHTTT--GGG---SSGGG---S-S-SS-----HHHHHHHHHHHH
T ss_pred ccccCcC--cCCChHHHHHHHHHHHHHhCCHHHHHHHHcCC--cccCccCcHHhcCCCCCCCCCC--ChHHHHHHHHHHH
Confidence 2 35644 79999999999999994 889999998 99999994 566655444 4578899999998
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEecce
Q 009981 313 EWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGI 348 (521)
Q Consensus 313 ~WYs~~Li~HgdrIL~~A~~~F~~~~v~l~aKv~GI 348 (521)
+=....+..-.+.|.+.+. +.+|++|..|.
T Consensus 209 ~~~~~~~~~~~~~ir~~~p------~~~vt~n~~~~ 238 (374)
T PF02449_consen 209 DRVAEFFRWQADIIREYDP------DHPVTTNFMGS 238 (374)
T ss_dssp HHHHHHHHHHHHHHHHHST------T-EEE-EE-TT
T ss_pred HHHHHHHHHHHHHHHHhCC------CceEEeCcccc
Confidence 8777777777777766654 56899998887
No 9
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.87 E-value=1.5e-21 Score=215.72 Aligned_cols=198 Identities=20% Similarity=0.297 Sum_probs=164.9
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeee-eeeeecCCCcccccchHHHH-HHHHHHCCCcEEEEEeeeccCCCCCCCCcccc
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGYFDL-IVLASNCGLKVRALLAFHQCGSGPGDPKWVPL 171 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVw-WG~VE~~~p~~Ydws~Y~~l-~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipL 171 (521)
-+++.|++||++||++|++.|++++| |+.+||+ +|+|||++.|+. ++++++.||+++ |++ .|+...
T Consensus 27 ~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~-eG~fdf~~~D~~~l~~a~~~Gl~vi--l~t---------~P~g~~ 94 (673)
T COG1874 27 WPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPE-EGKFDFTWLDEIFLERAYKAGLYVI--LRT---------GPTGAP 94 (673)
T ss_pred CCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCcc-ccccCcccchHHHHHHHHhcCceEE--Eec---------CCCCCC
Confidence 35699999999999999999999777 9999999 999999999999 999999999996 984 278899
Q ss_pred ChhhhhhhccCCCeeeeCCCCcc------cccccccccCcccccCCCCchHHHHHHHHHHHHHHhHh-hhh---hhh---
Q 009981 172 PQWVLEEIDKDPDLAYSDRFGRR------NMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPL-LGA---IIT--- 238 (521)
Q Consensus 172 P~WV~~~~~k~PDI~~tD~~G~r------~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~-~g~---vI~--- 238 (521)
|+|+.+ ++|||+.+|++|++ ++-|++ + +.|+++.+.+.++++++ +++ ||+
T Consensus 95 P~Wl~~---~~PeiL~~~~~~~~~~~g~r~~~~~~------------~--~~Yr~~~~~i~~~irer~~~~~~~v~~w~~ 157 (673)
T COG1874 95 PAWLAK---KYPEILAVDENGRVRSDGARENICPV------------S--PVYREYLDRILQQIRERLYGNGPAVITWQN 157 (673)
T ss_pred chHHhc---CChhheEecCCCcccCCCcccccccc------------c--HHHHHHHHHHHHHHHHHHhccCCceeEEEc
Confidence 999999 89999999999765 566666 5 59999999999999999 776 666
Q ss_pred cCceeeccCCCCccccccHHHHHHHHHHHHH------hcccccCCCCCCCCCcccC-----CCCCCCccccCCCCccchh
Q 009981 239 KLMWSWRSRELGEFQCYDKYMLASLNACARE------IGMREWGDGGPIGASNLMQ-----DPEHTEFFRTDNGLWNTAY 307 (521)
Q Consensus 239 ~~eWry~~PGiGEFQCYdk~~~~~fr~~a~~------~gn~~WG~~gP~~a~~Yn~-----~P~~t~FF~~~~g~~~s~Y 307 (521)
+|| | .|. -|||++|++.|+.|+++ .+|.+|++. +|+++|.. +|. .+-..+..+..++|
T Consensus 158 dne--Y--~~~---~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~--~ws~t~~~~~~i~~p~--~~~e~~~~~~~ld~ 226 (673)
T COG1874 158 DNE--Y--GGH---PCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTS--FWSHTYKDFDEIMSPN--PFGELPLPGLYLDY 226 (673)
T ss_pred cCc--c--CCc---cccccccHHHHHHHHHhCcchHHhhhhhhhhh--hcccccccHHhhcCCC--CccccCCccchhhH
Confidence 666 7 443 49999999999999995 779999998 99999994 444 22223456777999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009981 308 GNFFLEWYSGMLLLHGERICREAETIFR 335 (521)
Q Consensus 308 GrFFL~WYs~~Li~HgdrIL~~A~~~F~ 335 (521)
-+|..+= .++-.++....++..|+
T Consensus 227 ~~f~~e~----~~~~~~~~~~~~~~~~P 250 (673)
T COG1874 227 RRFESEQ----ILEFVREEGEAIKAYFP 250 (673)
T ss_pred hhhhhhh----hHHHHHHHHHHHHHhCC
Confidence 9999874 55556666666677773
No 10
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=99.00 E-value=1.4e-09 Score=111.91 Aligned_cols=77 Identities=27% Similarity=0.418 Sum_probs=54.4
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccch---HHHHHHHHHHCCCcEEEEEee--eccCCCCCCCCc
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRG---YFDLIVLASNCGLKVRALLAF--HQCGSGPGDPKW 168 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~---Y~~l~~mv~~~GLKv~~vlsf--HqCGGNVGDt~~ 168 (521)
.+++.|+.-|++||++|+|.|.+-|+|...|++ ||+|||++ .++++++++++||+|+ |.+ =.|+ ....
T Consensus 21 ~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~-~g~~df~g~~dl~~f~~~a~~~gl~vi--lrpGpyi~a----E~~~ 93 (319)
T PF01301_consen 21 IPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPE-EGQFDFTGNRDLDRFLDLAQENGLYVI--LRPGPYICA----EWDN 93 (319)
T ss_dssp S-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSB-TTB---SGGG-HHHHHHHHHHTT-EEE--EEEES---T----TBGG
T ss_pred CChhHHHHHHHHHHhCCcceEEEeccccccCCC-CCcccccchhhHHHHHHHHHHcCcEEE--ecccceecc----cccc
Confidence 358999999999999999999999999999998 99999997 7899999999999986 554 2222 1122
Q ss_pred cccChhhhh
Q 009981 169 VPLPQWVLE 177 (521)
Q Consensus 169 ipLP~WV~~ 177 (521)
--+|.||.+
T Consensus 94 gG~P~Wl~~ 102 (319)
T PF01301_consen 94 GGLPAWLLR 102 (319)
T ss_dssp GG--GGGGG
T ss_pred hhhhhhhhc
Confidence 349999988
No 11
>PLN03059 beta-galactosidase; Provisional
Probab=98.60 E-value=2.6e-07 Score=105.39 Aligned_cols=138 Identities=17% Similarity=0.315 Sum_probs=98.8
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchH---HHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccc
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGY---FDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVP 170 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y---~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ip 170 (521)
.+++.|+.-|++||++|+|.|.+-|+|..-||+ ||+|||++- .+.++++++.||.|++=.+=.-|+ .--..-
T Consensus 56 ~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~-~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcA----Ew~~GG 130 (840)
T PLN03059 56 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICA----EWNFGG 130 (840)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEecccccCCC-CCeeeccchHHHHHHHHHHHHcCCEEEecCCcceee----eecCCC
Confidence 478999999999999999999999999999998 999999985 456789999999997333322222 011234
Q ss_pred cChhhhhhhccCCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHhHhhh----------hhhh--
Q 009981 171 LPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLG----------AIIT-- 238 (521)
Q Consensus 171 LP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~g----------~vI~-- 238 (521)
||.||.+ .|+|-+ ||.-+.|.+.|++|-+++.+.+. .||.
T Consensus 131 lP~WL~~----~~~i~~------------------------Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQ 182 (840)
T PLN03059 131 FPVWLKY----VPGIEF------------------------RTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQ 182 (840)
T ss_pred Cchhhhc----CCCccc------------------------ccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEE
Confidence 9999976 466432 23448899988888888888773 1555
Q ss_pred -cCceeeccCCCCccc----cccHHHHHHHHHHHHHhc
Q 009981 239 -KLMWSWRSRELGEFQ----CYDKYMLASLNACAREIG 271 (521)
Q Consensus 239 -~~eWry~~PGiGEFQ----CYdk~~~~~fr~~a~~~g 271 (521)
.|| | | .++ --|+.-++.+++.|++.|
T Consensus 183 IENE--Y---G--s~~~~~~~~d~~Yl~~l~~~~~~~G 213 (840)
T PLN03059 183 IENE--Y---G--PVEWEIGAPGKAYTKWAADMAVKLG 213 (840)
T ss_pred eccc--c---c--ceecccCcchHHHHHHHHHHHHHcC
Confidence 677 7 3 211 124444556666666654
No 12
>TIGR03356 BGL beta-galactosidase.
Probab=98.38 E-value=7.2e-07 Score=95.34 Aligned_cols=74 Identities=16% Similarity=0.203 Sum_probs=66.7
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccc---cchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCc
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYD---WRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKW 168 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Yd---ws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ 168 (521)
.......+++||+.||++|++.+++++=|..+||+|++++| ++.|+++++.++++||+++|.|. |
T Consensus 49 a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~-H----------- 116 (427)
T TIGR03356 49 ACDHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY-H----------- 116 (427)
T ss_pred cccHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec-c-----------
Confidence 35677899999999999999999999999999999888898 79999999999999999997776 3
Q ss_pred cccChhhhh
Q 009981 169 VPLPQWVLE 177 (521)
Q Consensus 169 ipLP~WV~~ 177 (521)
..+|.|+.+
T Consensus 117 fd~P~~l~~ 125 (427)
T TIGR03356 117 WDLPQALED 125 (427)
T ss_pred CCccHHHHh
Confidence 458999865
No 13
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.16 E-value=9.6e-06 Score=90.28 Aligned_cols=146 Identities=22% Similarity=0.351 Sum_probs=102.6
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHH---HHHHHHCCCcEEEEEee--ecc-CCCCCCCC
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDL---IVLASNCGLKVRALLAF--HQC-GSGPGDPK 167 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l---~~mv~~~GLKv~~vlsf--HqC-GGNVGDt~ 167 (521)
..++.|+.-|+++|++|.|+|.+-|+|..-||. ||+||||+-.+| +.+++++||-|+ |-- =-| -.|-
T Consensus 46 ~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~-~g~y~FsG~~DlvkFikl~~~~GLyv~--LRiGPyIcaEw~~---- 118 (649)
T KOG0496|consen 46 STPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPS-PGKYDFSGRYDLVKFIKLIHKAGLYVI--LRIGPYICAEWNF---- 118 (649)
T ss_pred CChhhhHHHHHHHHhcCCceeeeeeecccccCC-CCcccccchhHHHHHHHHHHHCCeEEE--ecCCCeEEecccC----
Confidence 467999999999999999999999999999998 999999996554 678889999986 552 001 1111
Q ss_pred ccccChhhhhhhccCCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHhHhhhh--------hhh-
Q 009981 168 WVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA--------IIT- 238 (521)
Q Consensus 168 ~ipLP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~g~--------vI~- 238 (521)
--+|.|+.. .|.|.|. |.-+.|...|++|.+++-+.++. ||.
T Consensus 119 -GG~P~wL~~----~pg~~~R------------------------t~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~ 169 (649)
T KOG0496|consen 119 -GGLPWWLRN----VPGIVFR------------------------TDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILV 169 (649)
T ss_pred -CCcchhhhh----CCceEEe------------------------cCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 138855544 5776653 23378888888888888775432 555
Q ss_pred --cCceeeccCCCCccccccHHHHHHHHHHHHHh--------cccccCCCCCCCCCc
Q 009981 239 --KLMWSWRSRELGEFQCYDKYMLASLNACAREI--------GMREWGDGGPIGASN 285 (521)
Q Consensus 239 --~~eWry~~PGiGEFQCYdk~~~~~fr~~a~~~--------gn~~WG~~gP~~a~~ 285 (521)
.|| | | -|++...+..+.+++-+ ...-|..-+..++..
T Consensus 170 QIENE--Y---G-----~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd 216 (649)
T KOG0496|consen 170 QIENE--Y---G-----NYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPD 216 (649)
T ss_pred Eeech--h---h-----HHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCC
Confidence 678 7 5 57777777777777731 123366554445443
No 14
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.98 E-value=1.4e-05 Score=85.83 Aligned_cols=106 Identities=20% Similarity=0.276 Sum_probs=78.8
Q ss_pred ecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCC-Ccccc---cchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCc
Q 009981 93 VKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDR-PGVYD---WRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKW 168 (521)
Q Consensus 93 v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~-p~~Yd---ws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ 168 (521)
......+++||+.||++|++..++.+=|..++|+| +|+.| +..|+++++.++++||+.+|.|- |
T Consensus 54 ~d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~-H----------- 121 (455)
T PF00232_consen 54 CDHYHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLY-H----------- 121 (455)
T ss_dssp TGHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEE-S-----------
T ss_pred ccchhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeee-e-----------
Confidence 46789999999999999999999999999999998 78888 99999999999999999987776 3
Q ss_pred cccChhhhhhhccCCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHhHhhhhhhh
Q 009981 169 VPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIIT 238 (521)
Q Consensus 169 ipLP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~g~vI~ 238 (521)
-.+|.|+.+.| |-.+ |.-++.|.+|.+-..++|.++..--|+
T Consensus 122 ~~~P~~l~~~g------------gw~~----------------~~~~~~F~~Ya~~~~~~~gd~V~~w~T 163 (455)
T PF00232_consen 122 FDLPLWLEDYG------------GWLN----------------RETVDWFARYAEFVFERFGDRVKYWIT 163 (455)
T ss_dssp S--BHHHHHHT------------GGGS----------------THHHHHHHHHHHHHHHHHTTTBSEEEE
T ss_pred cccccceeecc------------cccC----------------HHHHHHHHHHHHHHHHHhCCCcceEEe
Confidence 67999998732 2222 234577777777777777766543333
No 15
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=97.70 E-value=0.00021 Score=77.82 Aligned_cols=74 Identities=11% Similarity=0.170 Sum_probs=66.4
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCC----CcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCC
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDR----PGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPK 167 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~----p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~ 167 (521)
.......+++|++.||++|++..++.+=|..++|+| +++-.++.|+++++.++++||+.+|.|.-
T Consensus 66 A~D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H----------- 134 (474)
T PRK09852 66 AIDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCH----------- 134 (474)
T ss_pred cCchhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeC-----------
Confidence 456788999999999999999999999999999975 47888999999999999999999877773
Q ss_pred ccccChhhhh
Q 009981 168 WVPLPQWVLE 177 (521)
Q Consensus 168 ~ipLP~WV~~ 177 (521)
-.+|.|+.+
T Consensus 135 -~~~P~~l~~ 143 (474)
T PRK09852 135 -FDVPMHLVT 143 (474)
T ss_pred -CCCCHHHHH
Confidence 579999865
No 16
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=97.62 E-value=0.00015 Score=78.97 Aligned_cols=108 Identities=14% Similarity=0.184 Sum_probs=83.2
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCC----CcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCC
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDR----PGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPK 167 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~----p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~ 167 (521)
.......+++||+.||++|++.-++.+=|..++|.| +++-.++.|+++++.++++||+.+|-|- |
T Consensus 64 A~D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~-H---------- 132 (477)
T PRK15014 64 AVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS-H---------- 132 (477)
T ss_pred ccCcccccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee-C----------
Confidence 346778999999999999999999999999999976 3667799999999999999999986665 3
Q ss_pred ccccChhhhhhhccCCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHhHhhhhhhh
Q 009981 168 WVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIIT 238 (521)
Q Consensus 168 ~ipLP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~g~vI~ 238 (521)
-.+|.|+.+ ++ .|-.+ |..++.|.+|.+...++|.++...-|+
T Consensus 133 -~dlP~~L~~---~y--------GGW~n----------------~~~~~~F~~Ya~~~f~~fgdrVk~WiT 175 (477)
T PRK15014 133 -FEMPLHLVQ---QY--------GSWTN----------------RKVVDFFVRFAEVVFERYKHKVKYWMT 175 (477)
T ss_pred -CCCCHHHHH---hc--------CCCCC----------------hHHHHHHHHHHHHHHHHhcCcCCEEEE
Confidence 679999976 22 22212 224567777777777777666544344
No 17
>PLN02814 beta-glucosidase
Probab=97.56 E-value=0.00023 Score=78.13 Aligned_cols=108 Identities=21% Similarity=0.231 Sum_probs=86.6
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCccccc---chHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCc
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDW---RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKW 168 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydw---s~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ 168 (521)
.......+++|++.||++|++.-+..+=|..++|+|+|+.|= ..|++|++.++++||+-+|-|. |
T Consensus 72 a~D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-H----------- 139 (504)
T PLN02814 72 ASDGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-H----------- 139 (504)
T ss_pred cccHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-C-----------
Confidence 456789999999999999999999999999999998887775 7799999999999999987666 3
Q ss_pred cccChhhhhhhccCCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHhHhhhhhhh
Q 009981 169 VPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIIT 238 (521)
Q Consensus 169 ipLP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~g~vI~ 238 (521)
-.||.|+.+ ++ .|-.| |..++.|.+|.+-..++|.++.+.-|+
T Consensus 140 ~dlP~~L~~---~y--------GGW~n----------------~~~i~~F~~YA~~~f~~fgdrVk~WiT 182 (504)
T PLN02814 140 YDLPQSLED---EY--------GGWIN----------------RKIIEDFTAFADVCFREFGEDVKLWTT 182 (504)
T ss_pred CCCCHHHHH---hc--------CCcCC----------------hhHHHHHHHHHHHHHHHhCCcCCEEEe
Confidence 689999976 21 23222 334577888888877777777665444
No 18
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.56 E-value=0.0003 Score=68.29 Aligned_cols=123 Identities=16% Similarity=0.165 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHcCCceEEEeeeeeeee-cCCCc---ccccchHHHHHHHHHHCCCcEEEEEeeec----cCCCCCCCCc
Q 009981 97 KAMAQSFKALAAAGVEGVVVEVWWGVVE-RDRPG---VYDWRGYFDLIVLASNCGLKVRALLAFHQ----CGSGPGDPKW 168 (521)
Q Consensus 97 ~~~~~dL~~LK~aGVdgV~vdVwWG~VE-~~~p~---~Ydws~Y~~l~~mv~~~GLKv~~vlsfHq----CGGNVGDt~~ 168 (521)
...+++++.||++|++.|+|.+.|..++ +..+. .--|..++++++.++++||+|+ +.+|. |.++-+....
T Consensus 21 ~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vi--ld~h~~~~w~~~~~~~~~~ 98 (281)
T PF00150_consen 21 SITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVI--LDLHNAPGWANGGDGYGNN 98 (281)
T ss_dssp GSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEE--EEEEESTTCSSSTSTTTTH
T ss_pred CCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEE--EEeccCccccccccccccc
Confidence 3889999999999999999999995555 44333 3467889999999999999995 88898 3334333333
Q ss_pred cccChhhhh-------hhccCCCeeeeCCCCcccccccccccCcccccCCCC------chHHHHHHHHHHHHHHhHhhh
Q 009981 169 VPLPQWVLE-------EIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRS------PIQAYTDFMRNFRDTFRPLLG 234 (521)
Q Consensus 169 ipLP~WV~~-------~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRT------pi~~Y~dfm~sF~~~fa~~~g 234 (521)
.....|+.+ .-+.+|.++.-+ .=++|...+.. +.+.|.++++...+.+.+.=.
T Consensus 99 ~~~~~~~~~~~~~la~~y~~~~~v~~~e-------------l~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~ 164 (281)
T PF00150_consen 99 DTAQAWFKSFWRALAKRYKDNPPVVGWE-------------LWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADP 164 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTEEEE-------------SSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTS
T ss_pred hhhHHHHHhhhhhhccccCCCCcEEEEE-------------ecCCccccCCccccccccchhhhhHHHHHHHHHHhcCC
Confidence 444445433 122334433322 22355554332 347788888888888876543
No 19
>PLN02998 beta-glucosidase
Probab=97.51 E-value=0.00024 Score=77.87 Aligned_cols=108 Identities=18% Similarity=0.242 Sum_probs=87.1
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccc---cchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCc
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYD---WRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKW 168 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Yd---ws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ 168 (521)
.......+++||+.||++|++.-+..+=|..|+|+|++.+| ...|+++++.++++||+-+|-|- |
T Consensus 77 a~D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-H----------- 144 (497)
T PLN02998 77 ACDQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-H----------- 144 (497)
T ss_pred cccHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-C-----------
Confidence 45788999999999999999999999999999999887765 67899999999999999987765 4
Q ss_pred cccChhhhhhhccCCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHhHhhhhhhh
Q 009981 169 VPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIIT 238 (521)
Q Consensus 169 ipLP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~g~vI~ 238 (521)
-.+|.|+.+ ++ .|-.+ |..++.|.+|.+-..++|.++...-|+
T Consensus 145 ~dlP~~L~~---~y--------GGW~n----------------~~~v~~F~~YA~~~~~~fgdrVk~WiT 187 (497)
T PLN02998 145 FDLPQALED---EY--------GGWLS----------------QEIVRDFTAYADTCFKEFGDRVSHWTT 187 (497)
T ss_pred CCCCHHHHH---hh--------CCcCC----------------chHHHHHHHHHHHHHHHhcCcCCEEEE
Confidence 679999976 22 22222 345688888888888888887765344
No 20
>PLN02849 beta-glucosidase
Probab=97.44 E-value=0.00037 Score=76.54 Aligned_cols=108 Identities=17% Similarity=0.231 Sum_probs=86.5
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccc---cchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCc
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYD---WRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKW 168 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Yd---ws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ 168 (521)
.......+++|++.||++|++.-+..+=|..++|+|+++.| ...|+++++.++++||+-+|-|. |
T Consensus 74 a~D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-H----------- 141 (503)
T PLN02849 74 ACDGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-H----------- 141 (503)
T ss_pred cccHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-C-----------
Confidence 45688999999999999999999999999999999877665 66899999999999999986665 4
Q ss_pred cccChhhhhhhccCCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHhHhhhhhhh
Q 009981 169 VPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIIT 238 (521)
Q Consensus 169 ipLP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~g~vI~ 238 (521)
-.+|.|+.+ ++ .|-.| |.-++.|.+|.+-..++|.++.+.-|+
T Consensus 142 ~dlP~~L~~---~y--------GGW~n----------------r~~v~~F~~YA~~~f~~fgDrVk~WiT 184 (503)
T PLN02849 142 YDHPQYLED---DY--------GGWIN----------------RRIIKDFTAYADVCFREFGNHVKFWTT 184 (503)
T ss_pred CCCcHHHHH---hc--------CCcCC----------------chHHHHHHHHHHHHHHHhcCcCCEEEE
Confidence 689999976 21 23222 335688888888888888877765444
No 21
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=97.41 E-value=0.00048 Score=74.88 Aligned_cols=74 Identities=14% Similarity=0.166 Sum_probs=66.0
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccc---cchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCc
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYD---WRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKW 168 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Yd---ws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ 168 (521)
.......+++|++.||++|++.-+..+-|..++|+|+++.| ...|++|++.++++||+-+|-|- |
T Consensus 48 a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-H----------- 115 (467)
T TIGR01233 48 ASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-H----------- 115 (467)
T ss_pred cCchhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-C-----------
Confidence 45788999999999999999999999999999999887763 67899999999999999886665 3
Q ss_pred cccChhhhh
Q 009981 169 VPLPQWVLE 177 (521)
Q Consensus 169 ipLP~WV~~ 177 (521)
..||.|+.+
T Consensus 116 ~dlP~~L~~ 124 (467)
T TIGR01233 116 FDTPEALHS 124 (467)
T ss_pred CCCcHHHHH
Confidence 679999966
No 22
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=97.40 E-value=0.00068 Score=73.70 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=81.8
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCccc---ccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCc
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVY---DWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKW 168 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Y---dws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ 168 (521)
.......+++|++.||++|++.-+..+=|..++|+|++.. -+..|++|++.++++||+-+|.|- |
T Consensus 49 a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-H----------- 116 (469)
T PRK13511 49 ASDFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-H----------- 116 (469)
T ss_pred ccchhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-C-----------
Confidence 4578899999999999999999999999999999976544 578899999999999999986665 4
Q ss_pred cccChhhhhhhccCCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHhHhhhh
Q 009981 169 VPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA 235 (521)
Q Consensus 169 ipLP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~g~ 235 (521)
-.||.|+.+ +.|-.| |.-++.|.+|.+-..++|.+ .+.
T Consensus 117 ~dlP~~L~~------------~GGW~n----------------~~~v~~F~~YA~~~~~~fgd-Vk~ 154 (469)
T PRK13511 117 FDTPEALHS------------NGDWLN----------------RENIDHFVRYAEFCFEEFPE-VKY 154 (469)
T ss_pred CCCcHHHHH------------cCCCCC----------------HHHHHHHHHHHHHHHHHhCC-CCE
Confidence 689999966 123322 22456777777777777766 554
No 23
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=97.35 E-value=0.00061 Score=74.36 Aligned_cols=108 Identities=16% Similarity=0.228 Sum_probs=84.7
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCC-Cc---ccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCC
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDR-PG---VYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPK 167 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~-p~---~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~ 167 (521)
.......+++|++.||++|++.-+..+-|..|+|+| ++ +=-...|++|++.+.++||+-+|-|- |
T Consensus 68 a~d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-H---------- 136 (478)
T PRK09593 68 AIDMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-H---------- 136 (478)
T ss_pred ccchHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-c----------
Confidence 457889999999999999999999999999999986 33 34468999999999999999986665 4
Q ss_pred ccccChhhhhhhccCCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHhHhhhhhhh
Q 009981 168 WVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIIT 238 (521)
Q Consensus 168 ~ipLP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~g~vI~ 238 (521)
-.||.|+.+ ++ .|-.+ |.-++.|.+|.+-..++|.++...-|+
T Consensus 137 -~dlP~~L~~---~~--------GGW~n----------------~~~v~~F~~YA~~~~~~fgdrVk~WiT 179 (478)
T PRK09593 137 -FDCPMHLIE---EY--------GGWRN----------------RKMVGFYERLCRTLFTRYKGLVKYWLT 179 (478)
T ss_pred -cCCCHHHHh---hc--------CCCCC----------------hHHHHHHHHHHHHHHHHhcCcCCEEEe
Confidence 679999976 22 23222 334577888888888888777765444
No 24
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=97.32 E-value=0.00062 Score=74.27 Aligned_cols=108 Identities=16% Similarity=0.182 Sum_probs=84.0
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCC-c---ccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCC
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRP-G---VYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPK 167 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p-~---~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~ 167 (521)
.......+++|++.||++|++.-+..+-|..++|+|. + +=-...|++|++.++++||+-+|-|- |
T Consensus 62 a~D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-H---------- 130 (476)
T PRK09589 62 AIDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-H---------- 130 (476)
T ss_pred cccHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-C----------
Confidence 4578899999999999999999999999999999863 3 34478899999999999999987765 4
Q ss_pred ccccChhhhhhhccCCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHhHhhhhhhh
Q 009981 168 WVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIIT 238 (521)
Q Consensus 168 ~ipLP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~g~vI~ 238 (521)
-.||.|+.+ ++ .|=.+ |.-++.|.+|.+-..++|.++.+.-|+
T Consensus 131 -~dlP~~L~~---~y--------GGW~n----------------~~~i~~F~~YA~~~f~~fgdrVk~WiT 173 (476)
T PRK09589 131 -FEMPYHLVT---EY--------GGWRN----------------RKLIDFFVRFAEVVFTRYKDKVKYWMT 173 (476)
T ss_pred -CCCCHHHHH---hc--------CCcCC----------------hHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 679999966 22 23222 334577777777777777776655444
No 25
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.29 E-value=0.011 Score=58.95 Aligned_cols=47 Identities=26% Similarity=0.583 Sum_probs=37.3
Q ss_pred eeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccChhhhh
Q 009981 120 WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLE 177 (521)
Q Consensus 120 WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~WV~~ 177 (521)
|+.+||+ +|+|||+..|++++.++++||++..-..+.. ...|.|+..
T Consensus 3 W~~~ep~-~G~~n~~~~D~~~~~a~~~gi~v~gH~l~W~----------~~~P~W~~~ 49 (254)
T smart00633 3 WDSTEPS-RGQFNFSGADAIVNFAKENGIKVRGHTLVWH----------SQTPDWVFN 49 (254)
T ss_pred cccccCC-CCccChHHHHHHHHHHHHCCCEEEEEEEeec----------ccCCHhhhc
Confidence 8999998 9999999999999999999999853211211 136899865
No 26
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=97.15 E-value=0.0047 Score=56.83 Aligned_cols=110 Identities=17% Similarity=0.179 Sum_probs=74.1
Q ss_pred HHHHHHHHcCCceEEEee---e-ee----eeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccC
Q 009981 101 QSFKALAAAGVEGVVVEV---W-WG----VVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLP 172 (521)
Q Consensus 101 ~dL~~LK~aGVdgV~vdV---w-WG----~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP 172 (521)
+-++.||++|||.|+|.. + |. .+-+..|+- .-.-+.++++.+++.||+|++-++++ .-
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~Dllge~v~a~h~~Girv~ay~~~~-------------~d 69 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KRDLLGEQVEACHERGIRVPAYFDFS-------------WD 69 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-CcCHHHHHHHHHHHCCCEEEEEEeee-------------cC
Confidence 446789999999999943 2 32 222332443 46889999999999999999888852 55
Q ss_pred hhhhhhhccCCCeeeeCCCCcc--cccccccccCcccccCCCCchHHHHHHHHHHHHHHhHhh
Q 009981 173 QWVLEEIDKDPDLAYSDRFGRR--NMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL 233 (521)
Q Consensus 173 ~WV~~~~~k~PDI~~tD~~G~r--~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~ 233 (521)
.++.+ ++||=+.+|++|+. ..+..+.+.-.++ +-.-|+||+....+++.++|
T Consensus 70 ~~~~~---~HPeW~~~~~~G~~~~~~~~~~~~~~~~c------~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 70 EDAAE---RHPEWFVRDADGRPMRGERFGYPGWYTCC------LNSPYREFLLEQIREILDRY 123 (132)
T ss_pred hHHHH---hCCceeeECCCCCCcCCCCcCCCCceecC------CCccHHHHHHHHHHHHHHcC
Confidence 66666 89999999999982 1111110000011 11348899988888887766
No 27
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.97 E-value=0.009 Score=65.23 Aligned_cols=106 Identities=16% Similarity=0.233 Sum_probs=84.0
Q ss_pred CeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCc-ccc---cchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCC
Q 009981 91 GKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPG-VYD---WRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDP 166 (521)
Q Consensus 91 ~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~-~Yd---ws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt 166 (521)
.....-...++|++.||++|++.-++.+=|..+-|.+.+ ..| -..|++||+-+.+.||+.+|-|. |
T Consensus 53 ~a~d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-H--------- 122 (460)
T COG2723 53 EASDFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-H--------- 122 (460)
T ss_pred cccchhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-c---------
Confidence 345778899999999999999999999999999997666 555 56799999999999999987777 3
Q ss_pred CccccChhhhhhhccCCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHhHhhhh
Q 009981 167 KWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA 235 (521)
Q Consensus 167 ~~ipLP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~g~ 235 (521)
..+|.||.+ ++ .|-.| |..++.|..|.+-..++|.++.+-
T Consensus 123 --fd~P~~L~~---~y--------gGW~n----------------R~~i~~F~~ya~~vf~~f~dkVk~ 162 (460)
T COG2723 123 --FDLPLWLQK---PY--------GGWEN----------------RETVDAFARYAATVFERFGDKVKY 162 (460)
T ss_pred --cCCcHHHhh---cc--------CCccC----------------HHHHHHHHHHHHHHHHHhcCcceE
Confidence 789999988 33 23222 445677777777777777666543
No 28
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=96.56 E-value=0.026 Score=58.49 Aligned_cols=227 Identities=16% Similarity=0.176 Sum_probs=135.6
Q ss_pred ecCHHHHHHHHHHHHHcCCceEEEeeee-ee------eecCC------Ccc-cccchHHHHHHHHHHCCCcEEEEEeeec
Q 009981 93 VKRRKAMAQSFKALAAAGVEGVVVEVWW-GV------VERDR------PGV-YDWRGYFDLIVLASNCGLKVRALLAFHQ 158 (521)
Q Consensus 93 v~~~~~~~~dL~~LK~aGVdgV~vdVwW-G~------VE~~~------p~~-Ydws~Y~~l~~mv~~~GLKv~~vlsfHq 158 (521)
+..++.+++-|+.||++|++.|-+.|++ |. ++|.+ +++ -.|..+..+++.+++.||+|++=|-+--
T Consensus 15 ~~~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~ 94 (311)
T PF02638_consen 15 WPSKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGF 94 (311)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeec
Confidence 3478999999999999999999999994 43 34421 111 1377899999999999999998874321
Q ss_pred cCCCCCCCCccccChhhhhhhccCCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHhHhhhhhhh
Q 009981 159 CGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIIT 238 (521)
Q Consensus 159 CGGNVGDt~~ipLP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~g~vI~ 238 (521)
-...++. ..-..|.|+.. ++|+...+...+....-+|+ -..|.-++|+.+...++.+.|. |=+
T Consensus 95 ~~~~~~~-~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~ln------------P~~PeVr~~i~~~v~Eiv~~Yd-vDG 157 (311)
T PF02638_consen 95 NAPDVSH-ILKKHPEWFAV---NHPGWVRTYEDANGGYYWLN------------PGHPEVRDYIIDIVKEIVKNYD-VDG 157 (311)
T ss_pred CCCchhh-hhhcCchhhee---cCCCceeecccCCCCceEEC------------CCCHHHHHHHHHHHHHHHhcCC-CCe
Confidence 1112221 11235888765 56776666655554555666 2358899999999999999885 211
Q ss_pred ---cCceeeccCCCCccccccHHHHHHHHHHHHHhcccccCCCCCCCCCcccCCCCCCCccccCCCCccchhhhhHHHHH
Q 009981 239 ---KLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEFFRTDNGLWNTAYGNFFLEWY 315 (521)
Q Consensus 239 ---~~eWry~~PGiGEFQCYdk~~~~~fr~~a~~~gn~~WG~~gP~~a~~Yn~~P~~t~FF~~~~g~~~s~YGrFFL~WY 315 (521)
+- -+||.++-| ||...++.|++.-. ..|. ..|++ ....+|=
T Consensus 158 IhlDd-y~yp~~~~g----~~~~~~~~y~~~~g---------~~~~------~~~~d----------------~~W~~WR 201 (311)
T PF02638_consen 158 IHLDD-YFYPPPSFG----YDFPDVAAYEKYTG---------KDPF------SSPED----------------DAWTQWR 201 (311)
T ss_pred EEecc-cccccccCC----CCCccHHHHHHhcC---------cCCC------CCccc----------------hHHHHHH
Confidence 21 124222222 56666677765311 0010 01110 0155666
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCceEEEEecceeccCCCCCChhhhcccccCCCCCCChHHHHHHHhHcCcEEEEe
Q 009981 316 SGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCS 391 (521)
Q Consensus 316 s~~Li~HgdrIL~~A~~~F~~~~v~l~aKv~GIHWwy~t~SHaAElTAGyyN~~~rdGY~~Ia~mf~r~~~~l~fT 391 (521)
.+.+-+-..+|-+..+++= +.+.+++=..|+- |.+-.+=|.....-+++--++..++
T Consensus 202 r~~I~~~V~~i~~~ik~~k--P~v~~sisp~g~~-----------------~~~y~~~~qD~~~W~~~G~iD~i~P 258 (311)
T PF02638_consen 202 RDNINNFVKRIYDAIKAIK--PWVKFSISPFGIW-----------------NSAYDDYYQDWRNWLKEGYIDYIVP 258 (311)
T ss_pred HHHHHHHHHHHHHHHHHhC--CCCeEEEEeecch-----------------hhhhhheeccHHHHHhcCCccEEEe
Confidence 6666666666665555422 3566776544432 2333455677777776544555554
No 29
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=96.38 E-value=0.0098 Score=64.78 Aligned_cols=116 Identities=22% Similarity=0.380 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHH-HcCCceEEEeeeeeee-------ec-CCCc--ccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCC
Q 009981 96 RKAMAQSFKALA-AAGVEGVVVEVWWGVV-------ER-DRPG--VYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPG 164 (521)
Q Consensus 96 ~~~~~~dL~~LK-~aGVdgV~vdVwWG~V-------E~-~~p~--~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVG 164 (521)
...++++|+.++ ++|+.-|++ |++. .. .+++ .|||+..|+++|.+.++|||..+-|+|
T Consensus 38 ~~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f-------- 106 (486)
T PF01229_consen 38 RADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGF-------- 106 (486)
T ss_dssp BHHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-S--------
T ss_pred hHHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEe--------
Confidence 367889999886 699999975 4444 21 2233 399999999999999999999999998
Q ss_pred CCCccccChhhhhhhccCCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHhHhhhh--hhhcCce
Q 009981 165 DPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA--IITKLMW 242 (521)
Q Consensus 165 Dt~~ipLP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~g~--vI~~~eW 242 (521)
.|.++.. ....+ |. ..| .++ |- .-.+.+++++++|.+++.++||. |-. |
T Consensus 107 ------~p~~~~~---~~~~~-~~-~~~-----~~~------pp----~~~~~W~~lv~~~~~h~~~RYG~~ev~~---W 157 (486)
T PF01229_consen 107 ------MPMALAS---GYQTV-FW-YKG-----NIS------PP----KDYEKWRDLVRAFARHYIDRYGIEEVST---W 157 (486)
T ss_dssp ------B-GGGBS---S--EE-TT-TTE-----E-S-------B----S-HHHHHHHHHHHHHHHHHHHHHHHHTT---S
T ss_pred ------chhhhcC---CCCcc-cc-ccC-----CcC------Cc----ccHHHHHHHHHHHHHHHHhhcCCccccc---e
Confidence 6777765 21111 11 111 122 11 23588999999999999999985 544 8
Q ss_pred eec---cCCCCc
Q 009981 243 SWR---SRELGE 251 (521)
Q Consensus 243 ry~---~PGiGE 251 (521)
.|- ||....
T Consensus 158 ~fEiWNEPd~~~ 169 (486)
T PF01229_consen 158 YFEIWNEPDLKD 169 (486)
T ss_dssp EEEESS-TTSTT
T ss_pred eEEeCcCCCccc
Confidence 772 565543
No 30
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=96.14 E-value=0.054 Score=56.12 Aligned_cols=204 Identities=20% Similarity=0.286 Sum_probs=122.9
Q ss_pred HHHHHHHcCCceEEEe-ee-eeeeecCCCcccccchHHHHHHHHHHCCCcEE--EEEeeeccCCCCCCCCccccChhhhh
Q 009981 102 SFKALAAAGVEGVVVE-VW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVR--ALLAFHQCGSGPGDPKWVPLPQWVLE 177 (521)
Q Consensus 102 dL~~LK~aGVdgV~vd-Vw-WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~--~vlsfHqCGGNVGDt~~ipLP~WV~~ 177 (521)
..+.+=....+.|+.. .. |+.+|+. +|+|||+..|++++-++++|++|. +++. |. -.|.||.+
T Consensus 26 ~~~~~~~~~Fn~~t~eN~~Kw~~~e~~-~g~~~~~~~D~~~~~a~~~g~~vrGH~LvW-~~-----------~~P~w~~~ 92 (320)
T PF00331_consen 26 RYRELFAKHFNSVTPENEMKWGSIEPE-PGRFNFESADAILDWARENGIKVRGHTLVW-HS-----------QTPDWVFN 92 (320)
T ss_dssp HHHHHHHHH-SEEEESSTTSHHHHESB-TTBEE-HHHHHHHHHHHHTT-EEEEEEEEE-SS-----------SS-HHHHT
T ss_pred HHHHHHHHhCCeeeeccccchhhhcCC-CCccCccchhHHHHHHHhcCcceeeeeEEE-cc-----------cccceeee
Confidence 4666666788888876 44 9999998 999999999999999999999997 3333 32 46999988
Q ss_pred hhccCCCeeeeCCCCcccccccccccCcccccCCCCch--HHHHHHHHHHHHHHhHhhhh---hhh---cCceeeccCC-
Q 009981 178 EIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPI--QAYTDFMRNFRDTFRPLLGA---IIT---KLMWSWRSRE- 248 (521)
Q Consensus 178 ~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi--~~Y~dfm~sF~~~fa~~~g~---vI~---~~eWry~~PG- 248 (521)
. + .+ +|. +..++.|+.+.+++..+|++ |.. -||=-- ..|
T Consensus 93 ~-~----------~~--------------------~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~-~~~~ 140 (320)
T PF00331_consen 93 L-A----------NG--------------------SPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAID-DDGN 140 (320)
T ss_dssp S-T----------TS--------------------SBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B--TTSS
T ss_pred c-c----------CC--------------------CcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeeccc-CCCc
Confidence 3 0 01 121 57888999999999988883 322 011000 000
Q ss_pred -CC----cc--ccccHHHHHHHHHHHHHhcccccCCCCCCCCCcccCCCCCCCccccCCCCccchhhhhHHHHHHHHHHH
Q 009981 249 -LG----EF--QCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEFFRTDNGLWNTAYGNFFLEWYSGMLLL 321 (521)
Q Consensus 249 -iG----EF--QCYdk~~~~~fr~~a~~~gn~~WG~~gP~~a~~Yn~~P~~t~FF~~~~g~~~s~YGrFFL~WYs~~Li~ 321 (521)
.| .+ -+=++|...+|+.+-+.. | ...-|.| .|+.... .
T Consensus 141 ~~~~r~~~~~~~lG~~yi~~aF~~A~~~~-------------------P-~a~L~~N---Dy~~~~~------------~ 185 (320)
T PF00331_consen 141 PGGLRDSPWYDALGPDYIADAFRAAREAD-------------------P-NAKLFYN---DYNIESP------------A 185 (320)
T ss_dssp SSSBCTSHHHHHHTTCHHHHHHHHHHHHH-------------------T-TSEEEEE---ESSTTST------------H
T ss_pred cccccCChhhhcccHhHHHHHHHHHHHhC-------------------C-CcEEEec---cccccch------------H
Confidence 00 00 011568888888876632 1 2233444 2222222 3
Q ss_pred HHHHHHHHHHhhhcCCCceEEEEecceeccCCCCCChhhhcccccCCCCCCChHHHHHHHhHcCcEEEEeecccccCCcC
Q 009981 322 HGERICREAETIFRGTRVNTSAKVGGIHWHYGTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEK 401 (521)
Q Consensus 322 HgdrIL~~A~~~F~~~~v~l~aKv~GIHWwy~t~SHaAElTAGyyN~~~rdGY~~Ia~mf~r~~~~l~fTclEM~d~e~p 401 (521)
+.++++.+.+.+=. .+++|-+==--.|+..... .+.....++.|+..|+.+++|=|++.+.+.+
T Consensus 186 k~~~~~~lv~~l~~-~gvpIdgIG~Q~H~~~~~~---------------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~ 249 (320)
T PF00331_consen 186 KRDAYLNLVKDLKA-RGVPIDGIGLQSHFDAGYP---------------PEQIWNALDRFASLGLPIHITELDVRDDDNP 249 (320)
T ss_dssp HHHHHHHHHHHHHH-TTHCS-EEEEEEEEETTSS---------------HHHHHHHHHHHHTTTSEEEEEEEEEESSSTT
T ss_pred HHHHHHHHHHHHHh-CCCccceechhhccCCCCC---------------HHHHHHHHHHHHHcCCceEEEeeeecCCCCC
Confidence 45666666654332 2566554222234333322 2445577778888999999999999988865
No 31
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=95.96 E-value=0.05 Score=57.33 Aligned_cols=37 Identities=11% Similarity=0.313 Sum_probs=32.6
Q ss_pred EEEeee---eeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 114 VVVEVW---WGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 114 V~vdVw---WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
+-+.++ |..+||+ +|.|+|..-|++++-+|++||+++
T Consensus 60 ~iTpenemKwe~i~p~-~G~f~Fe~AD~ia~FAr~h~m~lh 99 (345)
T COG3693 60 QITPENEMKWEAIEPE-RGRFNFEAADAIANFARKHNMPLH 99 (345)
T ss_pred ccccccccccccccCC-CCccCccchHHHHHHHHHcCCeec
Confidence 345555 9999997 999999999999999999999864
No 32
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=94.07 E-value=0.083 Score=55.71 Aligned_cols=52 Identities=35% Similarity=0.503 Sum_probs=41.0
Q ss_pred HHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeec
Q 009981 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQ 158 (521)
Q Consensus 102 dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHq 158 (521)
=|+.||+.||+.|++-+| |.|...|..|...-.++++.++++||||. |.||-
T Consensus 29 ~~~ilk~~G~N~vRlRvw---v~P~~~g~~~~~~~~~~akrak~~Gm~vl--ldfHY 80 (332)
T PF07745_consen 29 LFQILKDHGVNAVRLRVW---VNPYDGGYNDLEDVIALAKRAKAAGMKVL--LDFHY 80 (332)
T ss_dssp HHHHHHHTT--EEEEEE----SS-TTTTTTSHHHHHHHHHHHHHTT-EEE--EEE-S
T ss_pred HHHHHHhcCCCeEEEEec---cCCcccccCCHHHHHHHHHHHHHCCCeEE--Eeecc
Confidence 478899999999999998 77774599999999999999999999996 99993
No 33
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=92.98 E-value=0.33 Score=46.31 Aligned_cols=58 Identities=17% Similarity=0.246 Sum_probs=44.2
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCC--Cccc-cc-------chHHHHHHHHHHCCCcEEEEEe
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDR--PGVY-DW-------RGYFDLIVLASNCGLKVRALLA 155 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~--p~~Y-dw-------s~Y~~l~~mv~~~GLKv~~vls 155 (521)
-+++.|++.|+.||++|++.|-|- |.-.+... |-++ ++ +.+..+++.+.+.|+||. ++
T Consensus 17 ~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~--~G 84 (166)
T PF14488_consen 17 WTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVF--VG 84 (166)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEE--Ee
Confidence 367899999999999999999776 55555432 2222 11 368999999999999997 55
No 34
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=92.16 E-value=0.54 Score=47.26 Aligned_cols=117 Identities=12% Similarity=0.081 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHcCCceEEEeeeeeeeec--CCCcc---cccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccC
Q 009981 98 AMAQSFKALAAAGVEGVVVEVWWGVVER--DRPGV---YDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLP 172 (521)
Q Consensus 98 ~~~~dL~~LK~aGVdgV~vdVwWG~VE~--~~p~~---Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP 172 (521)
.+.+.++++.++|+++|.++.=|+.... -+|.. |-+.+++++++.+++.|.+++ .|-||+. -++=
T Consensus 145 ~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~~----lH~cg~~------~~~~ 214 (306)
T cd00465 145 FILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPIV----HHSCYDA------ADLL 214 (306)
T ss_pred HHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCceE----EEECCCH------HHHH
Confidence 3556667888999999999988776542 12444 448999999999998887754 4899963 1222
Q ss_pred hhhhhhhccCCCeeeeCCCC-cc--------cccccccccCcccccCCCCchHHHHHHHHHHHHHHh
Q 009981 173 QWVLEEIDKDPDLAYSDRFG-RR--------NMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFR 230 (521)
Q Consensus 173 ~WV~~~~~k~PDI~~tD~~G-~r--------~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa 230 (521)
.++.+ ...|++-.|..- .- .+-||.-++|.. ++. .|+ +.=.+..++..+.+.
T Consensus 215 ~~l~~---~~~d~~~~d~~~~d~~~~~~~~~~~~~i~Ggv~~~-~~~-~~~-e~i~~~v~~~l~~~~ 275 (306)
T cd00465 215 EEMIQ---LGVDVISFDMTVNEPKEAIEKVGEKKTLVGGVDPG-YLP-ATD-EECIAKVEELVERLG 275 (306)
T ss_pred HHHHH---hCcceEecccccCCHHHHHHHhCCCEEEECCCCcc-ccC-CCH-HHHHHHHHHHHHHhC
Confidence 33444 345665555432 11 234788888776 333 354 445555555555553
No 35
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=91.97 E-value=0.37 Score=49.18 Aligned_cols=71 Identities=25% Similarity=0.287 Sum_probs=55.4
Q ss_pred CCcceEEeeecceecCCCee----cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCc
Q 009981 74 NGSPVFVKLPEDSTMIGGKV----KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLK 149 (521)
Q Consensus 74 ~~vpv~VMlPLd~v~~~~~v----~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLK 149 (521)
..+||+||+=-- .+.+ ..-+.+.+|++.+|++|++||.+++- ..+|+-|....++|++.++ |++
T Consensus 50 ~~ipv~vMIRPR----~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L------~~dg~vD~~~~~~Li~~a~--~~~ 117 (248)
T PRK11572 50 VTIPVHPIIRPR----GGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVL------DVDGHVDMPRMRKIMAAAG--PLA 117 (248)
T ss_pred cCCCeEEEEecC----CCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeE------CCCCCcCHHHHHHHHHHhc--CCc
Confidence 479999998542 2222 34578999999999999999999876 4589999999999999995 666
Q ss_pred EEEEEee
Q 009981 150 VRALLAF 156 (521)
Q Consensus 150 v~~vlsf 156 (521)
+.-=++|
T Consensus 118 vTFHRAf 124 (248)
T PRK11572 118 VTFHRAF 124 (248)
T ss_pred eEEechh
Confidence 6533566
No 36
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=91.34 E-value=0.94 Score=46.05 Aligned_cols=80 Identities=19% Similarity=0.268 Sum_probs=57.2
Q ss_pred HHHHHHHHHHcCCceEEEeeeeeeeecCCCcccc---cchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccChhh
Q 009981 99 MAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYD---WRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWV 175 (521)
Q Consensus 99 ~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Yd---ws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~WV 175 (521)
+.+.++++.++|+++|.++.-|+.-.--+|..|. +-+++++++.+++.|.++. .|-|| |.+ ++-.++
T Consensus 170 ~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~~----lH~cG-~~~-----~~~~~l 239 (330)
T cd03465 170 IIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPVI----HHNCG-DTA-----PILELM 239 (330)
T ss_pred HHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCceE----EEECC-Cch-----hHHHHH
Confidence 3455667778899999999988754322466666 9999999999999998754 69995 432 445566
Q ss_pred hhhhccCCCeeeeCCC
Q 009981 176 LEEIDKDPDLAYSDRF 191 (521)
Q Consensus 176 ~~~~~k~PDI~~tD~~ 191 (521)
.+ ...|++-.|..
T Consensus 240 ~~---~~~d~~~~d~~ 252 (330)
T cd03465 240 AD---LGADVFSIDVT 252 (330)
T ss_pred HH---hCCCeEeeccc
Confidence 66 34577777644
No 37
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=90.88 E-value=2.8 Score=47.36 Aligned_cols=145 Identities=16% Similarity=0.216 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHcCCceEEE-eee-ee-eeecCCCcccc-------------------------cchHHHHHHHHHHCCC
Q 009981 97 KAMAQSFKALAAAGVEGVVV-EVW-WG-VVERDRPGVYD-------------------------WRGYFDLIVLASNCGL 148 (521)
Q Consensus 97 ~~~~~dL~~LK~aGVdgV~v-dVw-WG-~VE~~~p~~Yd-------------------------ws~Y~~l~~mv~~~GL 148 (521)
..+.+.|..||++||+.|.+ +|+ .. .-|..+...|+ ...++++++.+.++||
T Consensus 164 ~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi 243 (605)
T TIGR02104 164 NGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGI 243 (605)
T ss_pred ccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCC
Confidence 35567799999999999976 333 11 11111111222 2459999999999999
Q ss_pred cEEEEEee-eccCCCCCCCCccccChhhhhhhccCCCeeee-CCCCcccccccccccCcccccCCCCchHHHHHHHHHHH
Q 009981 149 KVRALLAF-HQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYS-DRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFR 226 (521)
Q Consensus 149 Kv~~vlsf-HqCGGNVGDt~~ipLP~WV~~~~~k~PDI~~t-D~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~ 226 (521)
+|+.=+-| |-|++. +. + +.. ..|+-+|. |..|.-.+. + ++.+ -+. +--+..++|+..-.
T Consensus 244 ~VilDvV~NH~~~~~--~~---~----f~~---~~~~~~~~~~~~g~~~~~--~-g~~~--~~~--~~~~~v~~~i~~~~ 304 (605)
T TIGR02104 244 RVIMDVVYNHTYSRE--ES---P----FEK---TVPGYYYRYNEDGTLSNG--T-GVGN--DTA--SEREMMRKFIVDSV 304 (605)
T ss_pred EEEEEEEcCCccCCC--CC---c----ccC---CCCCeeEEECCCCCccCC--C-cccC--Ccc--cCCHHHHHHHHHHH
Confidence 99876666 544321 10 1 111 22443332 444432110 1 1111 011 22366777776655
Q ss_pred HHHhHhhhhhhhcCceeeccCCCCccccccHHHHHHHHHHHHH
Q 009981 227 DTFRPLLGAIITKLMWSWRSRELGEFQCYDKYMLASLNACARE 269 (521)
Q Consensus 227 ~~fa~~~g~vI~~~eWry~~PGiGEFQCYdk~~~~~fr~~a~~ 269 (521)
....+.++ | + +||++..+ ..+.-..+.|++.+++
T Consensus 305 ~~W~~e~~-i--D-GfR~D~~~-----~~~~~~~~~~~~~~~~ 338 (605)
T TIGR02104 305 LYWVKEYN-I--D-GFRFDLMG-----IHDIETMNEIRKALNK 338 (605)
T ss_pred HHHHHHcC-C--C-EEEEechh-----cCCHHHHHHHHHHHHh
Confidence 55544442 2 2 38886433 2445566777777765
No 38
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=90.66 E-value=0.44 Score=49.18 Aligned_cols=104 Identities=26% Similarity=0.363 Sum_probs=67.9
Q ss_pred CCCCcceEEeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 72 RRNGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 72 ~~~~vpv~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
..++|.|.+-.--.+- .|..+-.+++++-|+.+++.||.||-||-+ .+++|+-=.+|+++++.+.+++|-|
T Consensus 83 ~~KgVgi~lw~~~~~~--~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~------~~d~Q~~v~~y~~i~~~AA~~~Lmv- 153 (273)
T PF10566_consen 83 KEKGVGIWLWYHSETG--GNVANLEKQLDEAFKLYAKWGVKGVKIDFM------DRDDQEMVNWYEDILEDAAEYKLMV- 153 (273)
T ss_dssp HHTT-EEEEEEECCHT--TBHHHHHCCHHHHHHHHHHCTEEEEEEE--------SSTSHHHHHHHHHHHHHHHHTT-EE-
T ss_pred HHcCCCEEEEEeCCcc--hhhHhHHHHHHHHHHHHHHcCCCEEeeCcC------CCCCHHHHHHHHHHHHHHHHcCcEE-
Confidence 3457777776655431 112222223699999999999999999988 6699999999999999999999976
Q ss_pred EEEeeeccCCCCCCCCccccChhhhhhhccCCCeeeeCCCCcccccccccc
Q 009981 152 ALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLG 202 (521)
Q Consensus 152 ~vlsfHqCGGNVGDt~~ipLP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg 202 (521)
-||.|= .|.=+.+ .+|.++ .++|.|-.|+-.+.
T Consensus 154 ---nfHg~~----------kPtG~~R---TyPN~m--T~EgVrG~E~~~~~ 186 (273)
T PF10566_consen 154 ---NFHGAT----------KPTGLRR---TYPNLM--TREGVRGQEYNKWS 186 (273)
T ss_dssp ---EETTS-------------TTHHH---CSTTEE--EE--S--GGGGGTT
T ss_pred ---EecCCc----------CCCcccc---cCccHH--HHHHhhhhhhcccc
Confidence 489654 5554444 799876 56899988884433
No 39
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=90.61 E-value=0.49 Score=46.77 Aligned_cols=72 Identities=26% Similarity=0.367 Sum_probs=50.0
Q ss_pred CCCcceEEeeecceecCCCee----cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCC
Q 009981 73 RNGSPVFVKLPEDSTMIGGKV----KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGL 148 (521)
Q Consensus 73 ~~~vpv~VMlPLd~v~~~~~v----~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GL 148 (521)
...+||+||+=-- .+.+ ..-+.+.+|++.+|++|++||.+++- ..+++.|-...++|++.++ |+
T Consensus 48 ~~~ipv~vMIRpr----~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L------~~dg~iD~~~~~~Li~~a~--~~ 115 (201)
T PF03932_consen 48 AVDIPVHVMIRPR----GGDFVYSDEEIEIMKEDIRMLRELGADGFVFGAL------TEDGEIDEEALEELIEAAG--GM 115 (201)
T ss_dssp HTTSEEEEE--SS----SS-S---HHHHHHHHHHHHHHHHTT-SEEEE--B------ETTSSB-HHHHHHHHHHHT--TS
T ss_pred hcCCceEEEECCC----CCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEeE------CCCCCcCHHHHHHHHHhcC--CC
Confidence 5589999998541 1211 34578999999999999999998764 3488999999999999987 77
Q ss_pred cEEEEEee
Q 009981 149 KVRALLAF 156 (521)
Q Consensus 149 Kv~~vlsf 156 (521)
.+.-=++|
T Consensus 116 ~~tFHRAf 123 (201)
T PF03932_consen 116 PVTFHRAF 123 (201)
T ss_dssp EEEE-GGG
T ss_pred eEEEeCcH
Confidence 76523444
No 40
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=90.01 E-value=3.1 Score=42.85 Aligned_cols=96 Identities=11% Similarity=-0.052 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHcCCceEEEeee-eeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccChh-
Q 009981 97 KAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQW- 174 (521)
Q Consensus 97 ~~~~~dL~~LK~aGVdgV~vdVw-WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~W- 174 (521)
+++.+.+++|.++|++.|.+|+= |+.+-+..+....-.+.+++++.+.+.+..+. ...|-|.||...+....-+-|
T Consensus 155 ~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--v~lHiC~G~~~~~~~~~~~y~~ 232 (332)
T cd03311 155 LALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQ--IHTHICYGNFRSTWAAEGGYEP 232 (332)
T ss_pred HHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCE--EEEEEECCCCcccccccCcHHH
Confidence 46677888999999999999996 77554322335566777888888887565555 457999999743322222223
Q ss_pred hhhh-hccCCCeeeeCCCCcc
Q 009981 175 VLEE-IDKDPDLAYSDRFGRR 194 (521)
Q Consensus 175 V~~~-~~k~PDI~~tD~~G~r 194 (521)
+++. .+...|.+..|-...+
T Consensus 233 i~~~l~~~~vd~~~le~~~~~ 253 (332)
T cd03311 233 IAEYIFELDVDVFFLEYDNSR 253 (332)
T ss_pred HHHHHHhCCCCEEEEEEcCCC
Confidence 2221 1345788888876543
No 41
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=89.33 E-value=1.1 Score=49.97 Aligned_cols=108 Identities=21% Similarity=0.274 Sum_probs=81.2
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCC--cccccc---hHHHHHHHHHHCCCcEEEEEeeeccCCCCCCC
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRP--GVYDWR---GYFDLIVLASNCGLKVRALLAFHQCGSGPGDP 166 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p--~~Ydws---~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt 166 (521)
.+..--..++|++.||++||++-+..+-|+.+=|.|. +.-|.. +|..|++.+.++||+-.|-| ||
T Consensus 86 a~D~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL-fH--------- 155 (524)
T KOG0626|consen 86 AVDFYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL-FH--------- 155 (524)
T ss_pred echhhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE-ec---------
Confidence 3456678999999999999999999999999999987 456664 69999999999999998655 46
Q ss_pred CccccChhhhhhhccCCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHhHhhhhhhh
Q 009981 167 KWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIIT 238 (521)
Q Consensus 167 ~~ipLP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~g~vI~ 238 (521)
--+|+|+.++ .|- ++. +.-++.+++|.+--=++|.++-+.=|+
T Consensus 156 --wDlPq~LeDe------------YgG--------------wLn-~~ivedF~~yA~~CF~~fGDrVK~WiT 198 (524)
T KOG0626|consen 156 --WDLPQALEDE------------YGG--------------WLN-PEIVEDFRDYADLCFQEFGDRVKHWIT 198 (524)
T ss_pred --CCCCHHHHHH------------hcc--------------ccC-HHHHHHHHHHHHHHHHHhcccceeeEE
Confidence 4689999662 221 111 223577777777766777776655334
No 42
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=88.87 E-value=2.9 Score=43.21 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCCcccc---cchHHHHHHHHHHCCCcEEEEEeeeccCC
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGVYD---WRGYFDLIVLASNCGLKVRALLAFHQCGS 161 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Yd---ws~Y~~l~~mv~~~GLKv~~vlsfHqCGG 161 (521)
.+.++++.++|+++|.+..-|+.-.--+|..|. +.+++++++-+++.|... ..|-||.
T Consensus 183 ~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~----ilH~CG~ 243 (340)
T TIGR01463 183 IAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGIT----VLHICGF 243 (340)
T ss_pred HHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCce----EEEECCC
Confidence 445566789999999998878742223455444 999999999999988543 2588973
No 43
>PRK10785 maltodextrin glucosidase; Provisional
Probab=88.22 E-value=13 Score=42.12 Aligned_cols=157 Identities=18% Similarity=0.171 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccc-------------cchHHHHHHHHHHCCCcEEEEEeeeccCC
Q 009981 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYD-------------WRGYFDLIVLASNCGLKVRALLAFHQCGS 161 (521)
Q Consensus 95 ~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Yd-------------ws~Y~~l~~mv~~~GLKv~~vlsfHqCGG 161 (521)
|-+.+.+.|..||++||++|-+.=. .|..+--.|| .+.+++|++.+++.||||+.=+-|.-||.
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~Pi---f~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~ 253 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNPI---FTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGD 253 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCc---ccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCC
Confidence 6689999999999999999988653 2332233343 25789999999999999987777755551
Q ss_pred CCCCCCccccChhhhhhh-----------ccCCCeeeeCCCCccccccccc-ccCcccccCCCCchHHHHHHHHHHHHH-
Q 009981 162 GPGDPKWVPLPQWVLEEI-----------DKDPDLAYSDRFGRRNMEYISL-GCDILPVLRGRSPIQAYTDFMRNFRDT- 228 (521)
Q Consensus 162 NVGDt~~ipLP~WV~~~~-----------~k~PDI~~tD~~G~r~~EclSl-g~D~~pv~~GRTpi~~Y~dfm~sF~~~- 228 (521)
.-| |..+.. ..+.|-+..+..|. +.++ +++.+|-|.=.. +..++++..=.+.
T Consensus 254 --------~~~-~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~----~~~w~g~~~lPdLN~~n--p~v~~~l~~~~~~v 318 (598)
T PRK10785 254 --------SHP-WFDRHNRGTGGACHHPDSPWRDWYSFSDDGR----ALDWLGYASLPKLDFQS--EEVVNEIYRGEDSI 318 (598)
T ss_pred --------CCH-HHHHhhccccccccCCCCCcceeeEECCCCC----cCCcCCCCcCccccCCC--HHHHHHHHhhhhHH
Confidence 123 665431 12234444444442 2333 457788887555 6777777531111
Q ss_pred HhHhhhhhhhcCceeecc-C--CCCccccccHHHHHHHHHHHHH
Q 009981 229 FRPLLGAIITKLMWSWRS-R--ELGEFQCYDKYMLASLNACARE 269 (521)
Q Consensus 229 fa~~~g~vI~~~eWry~~-P--GiGEFQCYdk~~~~~fr~~a~~ 269 (521)
+.-.+..-..--+||++- . +.+...+-+....+.|++.+++
T Consensus 319 ~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~ 362 (598)
T PRK10785 319 VRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKE 362 (598)
T ss_pred HHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHh
Confidence 111221100112389862 1 1112223445566778888875
No 44
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=88.13 E-value=0.92 Score=46.06 Aligned_cols=77 Identities=26% Similarity=0.401 Sum_probs=61.6
Q ss_pred CCCCcceEEeeecceecCCCee----cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCC
Q 009981 72 RRNGSPVFVKLPEDSTMIGGKV----KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCG 147 (521)
Q Consensus 72 ~~~~vpv~VMlPLd~v~~~~~v----~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~G 147 (521)
+...+|||+|.== .+|.+ ..-+.+++|+++.|++|+.||.+++- ..+|+-|=.-..+|++.+.-.+
T Consensus 48 ~~~~ipv~~MIRP----RgGdFvY~~~E~~iM~~DI~~~~~lG~~GVV~G~l------t~dg~iD~~~le~Li~aA~gL~ 117 (241)
T COG3142 48 ELSKIPVYVMIRP----RGGDFVYSDDELEIMLEDIRLARELGVQGVVLGAL------TADGNIDMPRLEKLIEAAGGLG 117 (241)
T ss_pred hhcCCceEEEEec----CCCCcccChHHHHHHHHHHHHHHHcCCCcEEEeee------cCCCccCHHHHHHHHHHccCCc
Confidence 3478999999743 22222 24478999999999999999999876 5699999999999999999777
Q ss_pred CcEEEEEeeeccC
Q 009981 148 LKVRALLAFHQCG 160 (521)
Q Consensus 148 LKv~~vlsfHqCG 160 (521)
+-.+ ++|-.|-
T Consensus 118 vTFH--rAFD~~~ 128 (241)
T COG3142 118 VTFH--RAFDECP 128 (241)
T ss_pred eeee--hhhhhcC
Confidence 7776 8886555
No 45
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=85.65 E-value=1.8 Score=46.53 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeee
Q 009981 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFH 157 (521)
Q Consensus 95 ~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfH 157 (521)
..+.|++|++..|++||||..+++. +...+.+.-...+++.+++.|+||. +||-
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig-------~~d~~~~~~l~~a~~AA~~~gFKlf--~SfD 68 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG-------SSDSWQPDQLADAYQAAEAVGFKLF--FSFD 68 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc-------cCCcccHHHHHHHHHHHHhcCCEEE--EEec
Confidence 7789999999999999999999996 2556778999999999999999997 7773
No 46
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=85.64 E-value=3.5 Score=44.56 Aligned_cols=80 Identities=26% Similarity=0.373 Sum_probs=51.4
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeee-----------eeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCC
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWW-----------GVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSG 162 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwW-----------G~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGN 162 (521)
.+++.+.+.++.+|++|++.+.||.=| |.-++. +.+|= ++.+.|++.|++.|||.= |-|=----|
T Consensus 55 ~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~-~~kFP-~Gl~~l~~~i~~~Gmk~G--lW~ePe~v~ 130 (394)
T PF02065_consen 55 ITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPD-PKKFP-NGLKPLADYIHSLGMKFG--LWFEPEMVS 130 (394)
T ss_dssp --HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBB-TTTST-THHHHHHHHHHHTT-EEE--EEEETTEEE
T ss_pred CCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEC-hhhhC-CcHHHHHHHHHHCCCeEE--EEecccccc
Confidence 467889999999999999999999877 444444 44443 589999999999999986 443111111
Q ss_pred CCCCCccccChhhhh
Q 009981 163 PGDPKWVPLPQWVLE 177 (521)
Q Consensus 163 VGDt~~ipLP~WV~~ 177 (521)
.+-...-..|.|+..
T Consensus 131 ~~S~l~~~hPdw~l~ 145 (394)
T PF02065_consen 131 PDSDLYREHPDWVLR 145 (394)
T ss_dssp SSSCHCCSSBGGBTC
T ss_pred chhHHHHhCccceee
Confidence 221222336777766
No 47
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=85.01 E-value=7.3 Score=40.17 Aligned_cols=83 Identities=17% Similarity=0.282 Sum_probs=59.4
Q ss_pred CeecCHHHHHHHHHHHHHcCCceEEEeee----eee--------eec-------CCCcccccchHHHHHHHHHHCCCcEE
Q 009981 91 GKVKRRKAMAQSFKALAAAGVEGVVVEVW----WGV--------VER-------DRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 91 ~~v~~~~~~~~dL~~LK~aGVdgV~vdVw----WG~--------VE~-------~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
..+-+.+.+++-|..|...++|...+-.= |-+ .+. ...+.|.=+-+++|++.+++.||.|+
T Consensus 10 R~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~vi 89 (303)
T cd02742 10 RHFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVI 89 (303)
T ss_pred ccCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEE
Confidence 35778899999999999999998755432 422 111 12467888999999999999999998
Q ss_pred EEEeeeccCCCCCCCCccccChhhhhhhccCCCeeee
Q 009981 152 ALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYS 188 (521)
Q Consensus 152 ~vlsfHqCGGNVGDt~~ipLP~WV~~~~~k~PDI~~t 188 (521)
| .|-.|.=+....+.+|++.-.
T Consensus 90 P---------------EiD~PGH~~a~~~~~p~l~~~ 111 (303)
T cd02742 90 P---------------EIDMPGHSTAFVKSFPKLLTE 111 (303)
T ss_pred E---------------eccchHHHHHHHHhCHHhccC
Confidence 4 455676444444467776543
No 48
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=84.84 E-value=14 Score=38.01 Aligned_cols=83 Identities=12% Similarity=0.181 Sum_probs=58.4
Q ss_pred cCHHHHHHHHHHHHHcC--CceEEEeeeeeeeecCCCcccc-----cchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCC
Q 009981 94 KRRKAMAQSFKALAAAG--VEGVVVEVWWGVVERDRPGVYD-----WRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDP 166 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aG--VdgV~vdVwWG~VE~~~p~~Yd-----ws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt 166 (521)
.+.+.+.+-++.+++.| ++.|.+|.-|-. .-|.|. |-.-+++++.+++.|+|+++++.
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~----------- 91 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWET----CYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVH----------- 91 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccc----cCCccccChhhCCCHHHHHHHHHHCCCeEEEEEC-----------
Confidence 56788899999999999 689999986532 123333 44588999999999999985555
Q ss_pred CccccChhhhhhhccCCCeeeeCCCC
Q 009981 167 KWVPLPQWVLEEIDKDPDLAYSDRFG 192 (521)
Q Consensus 167 ~~ipLP~WV~~~~~k~PDI~~tD~~G 192 (521)
|.|..-.=+.+++. ..+.+.++.+|
T Consensus 92 P~i~~~s~~~~e~~-~~g~~vk~~~g 116 (303)
T cd06592 92 PFINTDSENFREAV-EKGYLVSEPSG 116 (303)
T ss_pred CeeCCCCHHHHhhh-hCCeEEECCCC
Confidence 44443333444443 35788899888
No 49
>PLN02361 alpha-amylase
Probab=84.76 E-value=16 Score=39.71 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=49.9
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCccccc-------------chHHHHHHHHHHCCCcEEEEEee-ecc
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDW-------------RGYFDLIVLASNCGLKVRALLAF-HQC 159 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydw-------------s~Y~~l~~mv~~~GLKv~~vlsf-HqC 159 (521)
+-++.+.+.|..||++||++|-+.--. |..++.-|+- +.++++++.++++||||++=+-+ |-|
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~---~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~ 102 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPS---QSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRV 102 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCC---cCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccccc
Confidence 357899999999999999999887643 2222222332 46899999999999999864444 777
Q ss_pred CCCCC
Q 009981 160 GSGPG 164 (521)
Q Consensus 160 GGNVG 164 (521)
|..-|
T Consensus 103 g~~~~ 107 (401)
T PLN02361 103 GTTQG 107 (401)
T ss_pred CCCCC
Confidence 75443
No 50
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=84.68 E-value=4.6 Score=41.23 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=66.4
Q ss_pred CCCCcceEEeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 72 RRNGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 72 ~~~~vpv~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
....+|+.+|.=...|- .-.+++=++.+|++||+||-|+-. | ++..+++++.++++||+++
T Consensus 86 ~~~~~p~vlm~Y~N~i~-------~~G~e~f~~~~~~aGvdGviipDL--------p----~ee~~~~~~~~~~~gl~~I 146 (258)
T PRK13111 86 KDPTIPIVLMTYYNPIF-------QYGVERFAADAAEAGVDGLIIPDL--------P----PEEAEELRAAAKKHGLDLI 146 (258)
T ss_pred cCCCCCEEEEecccHHh-------hcCHHHHHHHHHHcCCcEEEECCC--------C----HHHHHHHHHHHHHcCCcEE
Confidence 44578988988775332 225666799999999999999621 1 3577899999999999998
Q ss_pred EEEeeeccCCCCCCCCccccChhhhhhhccCCC-eeeeCCCCcc
Q 009981 152 ALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPD-LAYSDRFGRR 194 (521)
Q Consensus 152 ~vlsfHqCGGNVGDt~~ipLP~WV~~~~~k~PD-I~~tD~~G~r 194 (521)
+.++ |+.| +..+..+.+..++ |+++...|..
T Consensus 147 ~lva-----------p~t~-~eri~~i~~~s~gfIY~vs~~GvT 178 (258)
T PRK13111 147 FLVA-----------PTTT-DERLKKIASHASGFVYYVSRAGVT 178 (258)
T ss_pred EEeC-----------CCCC-HHHHHHHHHhCCCcEEEEeCCCCC
Confidence 5555 5554 6788877777777 4445766643
No 51
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=84.65 E-value=7.2 Score=40.07 Aligned_cols=91 Identities=19% Similarity=0.279 Sum_probs=64.3
Q ss_pred CCCCcceEEeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 72 RRNGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 72 ~~~~vpv~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
....+|+.+|.=.+.|- .-.+++=++.+|++||+||-|+-- | ++..+++.+.++++||.++
T Consensus 84 ~~~~~pivlm~Y~N~i~-------~~G~e~F~~~~~~aGvdGlIipDL--------P----~ee~~~~~~~~~~~gl~~I 144 (259)
T PF00290_consen 84 KEPDIPIVLMTYYNPIF-------QYGIERFFKEAKEAGVDGLIIPDL--------P----PEESEELREAAKKHGLDLI 144 (259)
T ss_dssp HCTSSEEEEEE-HHHHH-------HH-HHHHHHHHHHHTEEEEEETTS--------B----GGGHHHHHHHHHHTT-EEE
T ss_pred cCCCCCEEEEeeccHHh-------ccchHHHHHHHHHcCCCEEEEcCC--------C----hHHHHHHHHHHHHcCCeEE
Confidence 56789999998875442 134666789999999999998754 2 3566889999999999999
Q ss_pred EEEeeeccCCCCCCCCccccChhhhhhhccCCCeee-eCCCCc
Q 009981 152 ALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAY-SDRFGR 193 (521)
Q Consensus 152 ~vlsfHqCGGNVGDt~~ipLP~WV~~~~~k~PDI~~-tD~~G~ 193 (521)
...+ |+- .+..+.++.+.-+..+| +...|.
T Consensus 145 ~lv~-----------p~t-~~~Ri~~i~~~a~gFiY~vs~~Gv 175 (259)
T PF00290_consen 145 PLVA-----------PTT-PEERIKKIAKQASGFIYLVSRMGV 175 (259)
T ss_dssp EEEE-----------TTS--HHHHHHHHHH-SSEEEEESSSSS
T ss_pred EEEC-----------CCC-CHHHHHHHHHhCCcEEEeeccCCC
Confidence 7777 444 37788887766666444 577664
No 52
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=84.58 E-value=7.4 Score=40.48 Aligned_cols=84 Identities=14% Similarity=0.206 Sum_probs=62.0
Q ss_pred CeecCHHHHHHHHHHHHHcCCceEEE---eee-eeee-e-----------------------cCCCcccccchHHHHHHH
Q 009981 91 GKVKRRKAMAQSFKALAAAGVEGVVV---EVW-WGVV-E-----------------------RDRPGVYDWRGYFDLIVL 142 (521)
Q Consensus 91 ~~v~~~~~~~~dL~~LK~aGVdgV~v---dVw-WG~V-E-----------------------~~~p~~Ydws~Y~~l~~m 142 (521)
...-+.+.+++-|..|...++|.+.+ |-| |-+- . ....+.|.=+-+++|++.
T Consensus 11 R~~~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~y 90 (326)
T cd06564 11 RKYYSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAY 90 (326)
T ss_pred CCCCCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHH
Confidence 34567899999999999999999986 333 3210 0 113667888999999999
Q ss_pred HHHCCCcEEEEEeeeccCCCCCCCCccccChhhhhhhccCCCeeeeC
Q 009981 143 ASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSD 189 (521)
Q Consensus 143 v~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~WV~~~~~k~PDI~~tD 189 (521)
+++.||.|+ |.|-.|.=+....+.+|++....
T Consensus 91 A~~rgI~vI---------------PEID~PGH~~a~~~~~pel~~~~ 122 (326)
T cd06564 91 AKDRGVNII---------------PEIDSPGHSLAFTKAMPELGLKN 122 (326)
T ss_pred HHHcCCeEe---------------ccCCCcHHHHHHHHhhHHhcCCC
Confidence 999999998 56667875555555677766543
No 53
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=84.48 E-value=16 Score=44.66 Aligned_cols=145 Identities=15% Similarity=0.196 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHHHcCCceEEEe-ee-eeeeec-C----------CCcccccc-------------------------hH
Q 009981 95 RRKAMAQSFKALAAAGVEGVVVE-VW-WGVVER-D----------RPGVYDWR-------------------------GY 136 (521)
Q Consensus 95 ~~~~~~~dL~~LK~aGVdgV~vd-Vw-WG~VE~-~----------~p~~Ydws-------------------------~Y 136 (521)
+-.++.+.|..||++||+.|.+- ++ .+.+.. . +...|+|. .+
T Consensus 478 tf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~Ef 557 (1111)
T TIGR02102 478 TFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEF 557 (1111)
T ss_pred CHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHH
Confidence 45688888999999999999763 44 433321 0 12345555 38
Q ss_pred HHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccChhhhhhhccCCCee-eeCCCCcccccccccccCcccccCCCCch
Q 009981 137 FDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLA-YSDRFGRRNMEYISLGCDILPVLRGRSPI 215 (521)
Q Consensus 137 ~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~WV~~~~~k~PDI~-~tD~~G~r~~EclSlg~D~~pv~~GRTpi 215 (521)
+++++.++++||+|+.=+-|--|+.+ ...+ ...|+-+ +.|..|.... ++++.+ +.-. -
T Consensus 558 K~LV~alH~~GI~VILDVVyNHt~~~-----------~~f~--~~~p~Yy~~~~~~G~~~~---~~~g~~---l~~e--~ 616 (1111)
T TIGR02102 558 KNLINEIHKRGMGVILDVVYNHTAKV-----------YIFE--DLEPNYYHFMDADGTPRT---SFGGGR---LGTT--H 616 (1111)
T ss_pred HHHHHHHHHCCCEEEEeccccccccc-----------cccc--ccCCCceEeeCCCCCccc---ccCCCC---CCcC--C
Confidence 99999999999999754444222210 1112 1234422 3455665321 222211 1111 2
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhhcCceeeccCCCCccccccHHHHHHHHHHHHH
Q 009981 216 QAYTDFMRNFRDTFRPLLGAIITKLMWSWRSRELGEFQCYDKYMLASLNACARE 269 (521)
Q Consensus 216 ~~Y~dfm~sF~~~fa~~~g~vI~~~eWry~~PGiGEFQCYdk~~~~~fr~~a~~ 269 (521)
++.++||..-.....+.|+ | +| |||+.-| .+|......++..+++
T Consensus 617 ~~vrk~iiDsl~yWv~ey~-V--DG-FRfDl~g-----~~d~~~~~~~~~~l~~ 661 (1111)
T TIGR02102 617 EMSRRILVDSIKYLVDEFK-V--DG-FRFDMMG-----DHDAASIEIAYKEAKA 661 (1111)
T ss_pred HHHHHHHHHHHHHHHHhcC-C--cE-EEEeccc-----cCCHHHHHHHHHHHHH
Confidence 5556666544444444332 2 33 8996544 3666666666666654
No 54
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.86 E-value=15 Score=40.42 Aligned_cols=154 Identities=18% Similarity=0.165 Sum_probs=100.4
Q ss_pred CeecCHHHHHHHHHHHHHcCCceEEEeee-eee------eecCCCc-------ccccchHHHHHHHHHHCCCcEEEEEee
Q 009981 91 GKVKRRKAMAQSFKALAAAGVEGVVVEVW-WGV------VERDRPG-------VYDWRGYFDLIVLASNCGLKVRALLAF 156 (521)
Q Consensus 91 ~~v~~~~~~~~dL~~LK~aGVdgV~vdVw-WG~------VE~~~p~-------~Ydws~Y~~l~~mv~~~GLKv~~vlsf 156 (521)
..+..+..+..-|..|.++|+|.|-.-|| +|. +.|.+.+ .=.|.-+..+++.+++.||+|+|=+-|
T Consensus 58 ~v~~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~ 137 (418)
T COG1649 58 RVLFQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNP 137 (418)
T ss_pred cccccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhh
Confidence 34678999999999999999999999999 884 3333322 224666778888899999999986665
Q ss_pred eccCCCCCCCCccccChhhhhhhccCCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHhHhhhh-
Q 009981 157 HQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA- 235 (521)
Q Consensus 157 HqCGGNVGDt~~ipLP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~g~- 235 (521)
=.-+ +---.-+.--|.|... +.|+..+....|.. +..++++=- +.=++|+.+...+....|.-
T Consensus 138 ~~~a-~~~s~~~~~~p~~~~~---~~~~~~~~~~~~~~----------~~~~ldPg~--Pevq~~i~~lv~evV~~YdvD 201 (418)
T COG1649 138 YRMA-PPTSPLTKRHPHWLTT---KRPGWVYVRHQGWG----------KRVWLDPGI--PEVQDFITSLVVEVVRNYDVD 201 (418)
T ss_pred cccC-CCCChhHhhCCCCccc---CCCCeEEEecCCce----------eeeEeCCCC--hHHHHHHHHHHHHHHhCCCCC
Confidence 2111 1000122335778887 66787877777742 223555434 88899999999988888741
Q ss_pred hhh-cCceeeccCCCCccccccHHHHHHHHH
Q 009981 236 IIT-KLMWSWRSRELGEFQCYDKYMLASLNA 265 (521)
Q Consensus 236 vI~-~~eWry~~PGiGEFQCYdk~~~~~fr~ 265 (521)
-|- +--|-|+.++ -||+++..--|.
T Consensus 202 GIQfDd~fy~~~~~-----gy~~~~~~~y~~ 227 (418)
T COG1649 202 GIQFDDYFYYPIPF-----GYDPDTVTLYRY 227 (418)
T ss_pred ceecceeecccCcc-----ccCchHHHHHHh
Confidence 111 2112232233 588887655443
No 55
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=83.63 E-value=3.3 Score=43.72 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=47.2
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCcccc
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPL 171 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipL 171 (521)
-|.|+++++.|+..||++||+.|+|-- |.|. .-.++-++++.++||-|++-|+.-.| .+ +-.-|.
T Consensus 48 PLad~~~C~rDi~~l~~LgiNtIRVY~----vdp~-------~nHd~CM~~~~~aGIYvi~Dl~~p~~--sI--~r~~P~ 112 (314)
T PF03198_consen 48 PLADPEACKRDIPLLKELGINTIRVYS----VDPS-------KNHDECMSAFADAGIYVILDLNTPNG--SI--NRSDPA 112 (314)
T ss_dssp GGG-HHHHHHHHHHHHHHT-SEEEES-------TT-------S--HHHHHHHHHTT-EEEEES-BTTB--S----TTS--
T ss_pred cccCHHHHHHhHHHHHHcCCCEEEEEE----eCCC-------CCHHHHHHHHHhCCCEEEEecCCCCc--cc--cCCCCc
Confidence 468899999999999999999999863 4443 26899999999999999977775422 12 122344
Q ss_pred Chhh----------hhhhccCCCee
Q 009981 172 PQWV----------LEEIDKDPDLA 186 (521)
Q Consensus 172 P~WV----------~~~~~k~PDI~ 186 (521)
|.|= .++-++||.++
T Consensus 113 ~sw~~~l~~~~~~vid~fa~Y~N~L 137 (314)
T PF03198_consen 113 PSWNTDLLDRYFAVIDAFAKYDNTL 137 (314)
T ss_dssp ----HHHHHHHHHHHHHHTT-TTEE
T ss_pred CCCCHHHHHHHHHHHHHhccCCceE
Confidence 5882 23456777755
No 56
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=82.14 E-value=11 Score=38.87 Aligned_cols=64 Identities=22% Similarity=0.351 Sum_probs=51.3
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEE---eee--eeeeecCC-CcccccchHHHHHHHHHHCCCcEEEEEe
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVV---EVW--WGVVERDR-PGVYDWRGYFDLIVLASNCGLKVRALLA 155 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~v---dVw--WG~VE~~~-p~~Ydws~Y~~l~~mv~~~GLKv~~vls 155 (521)
.+-..+.+++-|+.|...|.|++.+ |-| -+.-|-.. ++.|.=+-+++|++.+++.||.|+|-+-
T Consensus 12 ~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid 81 (301)
T cd06565 12 AVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQ 81 (301)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCC
Confidence 6677899999999999999999987 444 33333222 6888889999999999999999996544
No 57
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=81.59 E-value=4.3 Score=41.89 Aligned_cols=75 Identities=17% Similarity=0.110 Sum_probs=51.6
Q ss_pred HHHHHHHHcCCceEEEeeeeeeeecCCCcccc---cchHHHHHHHHHHC--CCcEEEEEeeeccCCCCCCCCccccChhh
Q 009981 101 QSFKALAAAGVEGVVVEVWWGVVERDRPGVYD---WRGYFDLIVLASNC--GLKVRALLAFHQCGSGPGDPKWVPLPQWV 175 (521)
Q Consensus 101 ~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Yd---ws~Y~~l~~mv~~~--GLKv~~vlsfHqCGGNVGDt~~ipLP~WV 175 (521)
+-++++.++|+++|.+..=|+.+ -+|.+|+ +-+++++++.+++. |.++ .|-|||+ -++-.++
T Consensus 181 ~~~~~~ieaGad~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~~i-----lh~cg~~------~~~~~~~ 247 (335)
T cd00717 181 EYLKAQIEAGAQAVQIFDSWAGA--LSPEDFEEFVLPYLKRIIEEVKKRLPGVPV-----ILFAKGA------GGLLEDL 247 (335)
T ss_pred HHHHHHHHhCCCEEEEeCccccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-----EEEcCCC------HHHHHHH
Confidence 33455667999999765546643 4577888 99999999999998 5544 3557743 1556677
Q ss_pred hhhhccCCCeeeeCCC
Q 009981 176 LEEIDKDPDLAYSDRF 191 (521)
Q Consensus 176 ~~~~~k~PDI~~tD~~ 191 (521)
.+ ...+++-.|..
T Consensus 248 ~~---~~~~~~s~d~~ 260 (335)
T cd00717 248 AQ---LGADVVGLDWR 260 (335)
T ss_pred Hh---cCCCEEEeCCC
Confidence 66 33577777754
No 58
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=81.42 E-value=17 Score=37.14 Aligned_cols=88 Identities=9% Similarity=0.139 Sum_probs=58.9
Q ss_pred ecCHHHHHHHHHHHHHcC--CceEEEeeeeeeeecCCCcccccc-----hHHHHHHHHHHCCCcEEEEEeeeccCCCCCC
Q 009981 93 VKRRKAMAQSFKALAAAG--VEGVVVEVWWGVVERDRPGVYDWR-----GYFDLIVLASNCGLKVRALLAFHQCGSGPGD 165 (521)
Q Consensus 93 v~~~~~~~~dL~~LK~aG--VdgV~vdVwWG~VE~~~p~~Ydws-----~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGD 165 (521)
-.+.+.+.+-++.+|++| +|++-+|.=|- ...+-+.|+|. -.+++++.+++.|+|++ +..|-. |+.
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~--~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~--~~~~P~---i~~ 92 (308)
T cd06593 20 YYDEEEVNEFADGMRERNLPCDVIHLDCFWM--KEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVC--LWINPY---IAQ 92 (308)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccc--cCCcceeeEECcccCCCHHHHHHHHHHCCCeEE--EEecCC---CCC
Confidence 367888999999999999 88899997443 11111245444 68999999999999987 444321 111
Q ss_pred CCccccChhhhhhhccCCCeeeeCCCCcc
Q 009981 166 PKWVPLPQWVLEEIDKDPDLAYSDRFGRR 194 (521)
Q Consensus 166 t~~ipLP~WV~~~~~k~PDI~~tD~~G~r 194 (521)
+ -| +.+++ +.++.+.++.+|..
T Consensus 93 ~----~~--~~~e~-~~~g~~v~~~~g~~ 114 (308)
T cd06593 93 K----SP--LFKEA-AEKGYLVKKPDGSV 114 (308)
T ss_pred C----ch--hHHHH-HHCCeEEECCCCCe
Confidence 1 12 33443 34688998888764
No 59
>PRK10658 putative alpha-glucosidase; Provisional
Probab=80.84 E-value=10 Score=43.66 Aligned_cols=86 Identities=9% Similarity=0.151 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHHcCC--ceEEEeeeeeeeecCCCcccccc-----hHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCC
Q 009981 95 RRKAMAQSFKALAAAGV--EGVVVEVWWGVVERDRPGVYDWR-----GYFDLIVLASNCGLKVRALLAFHQCGSGPGDPK 167 (521)
Q Consensus 95 ~~~~~~~dL~~LK~aGV--dgV~vdVwWG~VE~~~p~~Ydws-----~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~ 167 (521)
+.+.+.+-++.+++.|| +++.+|+.|.. ...-+.|.|. --+++++.+++.|+|+++++- |
T Consensus 281 ~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~--~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~-----------P 347 (665)
T PRK10658 281 DEATVNSFIDGMAERDLPLHVFHFDCFWMK--EFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWIN-----------P 347 (665)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEchhhhc--CCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEecc-----------C
Confidence 45677778888887665 78999998842 1101244443 458999999999999975543 5
Q ss_pred ccccChhhhhhhccCCCeeeeCCCCcc
Q 009981 168 WVPLPQWVLEEIDKDPDLAYSDRFGRR 194 (521)
Q Consensus 168 ~ipLP~WV~~~~~k~PDI~~tD~~G~r 194 (521)
.|..-.-+.+++.+. +.|.++.+|..
T Consensus 348 ~i~~~s~~f~e~~~~-gy~vk~~~G~~ 373 (665)
T PRK10658 348 YIAQKSPLFKEGKEK-GYLLKRPDGSV 373 (665)
T ss_pred CcCCCchHHHHHHHC-CeEEECCCCCE
Confidence 555444555666543 78999998875
No 60
>PRK01060 endonuclease IV; Provisional
Probab=80.67 E-value=2.9 Score=41.51 Aligned_cols=59 Identities=7% Similarity=0.045 Sum_probs=42.0
Q ss_pred eeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCccc-----ccchHHHHHHHHHHCCCcEE
Q 009981 81 KLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVY-----DWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 81 MlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Y-----dws~Y~~l~~mv~~~GLKv~ 151 (521)
|+++++.++ ..+.+++-|+.++++|+++|.+.+. +|..| +=...+++-+++++.||++.
T Consensus 1 ~~~~g~~~~-----~~~~~~~~l~~~~~~G~d~vEl~~~-------~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~ 64 (281)
T PRK01060 1 MKLIGAHVS-----AAGGLEGAVAEAAEIGANAFMIFTG-------NPQQWKRKPLEELNIEAFKAACEKYGISPE 64 (281)
T ss_pred CCeEEEeee-----cCCCHHHHHHHHHHcCCCEEEEECC-------CCCCCcCCCCCHHHHHHHHHHHHHcCCCCC
Confidence 567766542 2233999999999999999999553 23333 33346778889999999963
No 61
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=80.03 E-value=13 Score=38.78 Aligned_cols=97 Identities=15% Similarity=0.037 Sum_probs=59.7
Q ss_pred HHHHHHHHcCCceEEEeeeeeeeecCCCcccc---cchHHHHHHHHHHCC--CcEEEEEeeeccCCCCCCCCccccChhh
Q 009981 101 QSFKALAAAGVEGVVVEVWWGVVERDRPGVYD---WRGYFDLIVLASNCG--LKVRALLAFHQCGSGPGDPKWVPLPQWV 175 (521)
Q Consensus 101 ~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Yd---ws~Y~~l~~mv~~~G--LKv~~vlsfHqCGGNVGDt~~ipLP~WV 175 (521)
+-++++.++|+++|.+..=|+-+ -+|.+|+ +-+.+++++.+++.| ..+ | |-|||.. ++-.++
T Consensus 190 ~~~~~~~eaGad~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~~i---l--h~cg~~~------~~~~~~ 256 (346)
T PRK00115 190 AYLNAQIEAGAQAVQIFDSWAGA--LSPADYREFVLPYMKRIVAELKREHPDVPV---I--LFGKGAG------ELLEAM 256 (346)
T ss_pred HHHHHHHHcCCCEEEEecCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCE---E--EEcCCcH------HHHHHH
Confidence 34556677999999865546643 4577887 999999999999985 444 3 6687432 233455
Q ss_pred hhhhccCCCeeeeCCCCcccccccccccCcccccCCCCc
Q 009981 176 LEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSP 214 (521)
Q Consensus 176 ~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTp 214 (521)
.+ ...+++-.|..- --.|...+.-|+.++.+|-.|
T Consensus 257 ~~---~~~~~is~d~~~-dl~~~k~~~g~~~~i~Gni~p 291 (346)
T PRK00115 257 AE---TGADVVGLDWTV-DLAEARRRVGDKKALQGNLDP 291 (346)
T ss_pred Hh---cCCCEEeeCCCC-CHHHHHHHcCCCeEEEeCCCh
Confidence 55 455777777542 122333333344555555443
No 62
>smart00642 Aamy Alpha-amylase domain.
Probab=79.45 E-value=8.9 Score=36.36 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=48.6
Q ss_pred ecCHHHHHHHHHHHHHcCCceEEEeeeeeeeec-CCCccc-------------ccchHHHHHHHHHHCCCcEEEEEeeec
Q 009981 93 VKRRKAMAQSFKALAAAGVEGVVVEVWWGVVER-DRPGVY-------------DWRGYFDLIVLASNCGLKVRALLAFHQ 158 (521)
Q Consensus 93 v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~-~~p~~Y-------------dws~Y~~l~~mv~~~GLKv~~vlsfHq 158 (521)
.-+.+.+.+.|..||++||++|-+.-.+-..+. .+..-| +.+.++++++.++++||+|+.=+-+--
T Consensus 15 ~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 15 GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 457889999999999999999987654332221 001112 246689999999999999986666644
Q ss_pred cCC
Q 009981 159 CGS 161 (521)
Q Consensus 159 CGG 161 (521)
|++
T Consensus 95 ~~~ 97 (166)
T smart00642 95 TSD 97 (166)
T ss_pred CCC
Confidence 443
No 63
>PLN02229 alpha-galactosidase
Probab=79.15 E-value=4.8 Score=44.19 Aligned_cols=56 Identities=23% Similarity=0.313 Sum_probs=44.4
Q ss_pred cCHHHHHHHHHH-----HHHcCCceEEEeeeeee--------eecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 94 KRRKAMAQSFKA-----LAAAGVEGVVVEVWWGV--------VERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 94 ~~~~~~~~dL~~-----LK~aGVdgV~vdVwWG~--------VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
.+++.+.+..++ ||++|.+-|.||.-|.. +.+. |.+|- ++.+.|++.+++.|||.=
T Consensus 77 i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d-~~rFP-~G~k~ladyiH~~GlKfG 145 (427)
T PLN02229 77 INETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPD-PKTFP-SGIKLLADYVHSKGLKLG 145 (427)
T ss_pred cCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEC-hhhcC-CcHHHHHHHHHHCCCceE
Confidence 477888888887 49999999999997743 3333 44554 689999999999999964
No 64
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=79.15 E-value=15 Score=38.81 Aligned_cols=83 Identities=14% Similarity=0.235 Sum_probs=58.5
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEee----eeee--------eec-------------------CCCcccccchHHHHH
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEV----WWGV--------VER-------------------DRPGVYDWRGYFDLI 140 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdV----wWG~--------VE~-------------------~~p~~Ydws~Y~~l~ 140 (521)
.+-+.+.+++-|..|...++|...+-. -|-+ .|. ...|.|-=+-+++|+
T Consensus 13 ~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv 92 (357)
T cd06563 13 HFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIV 92 (357)
T ss_pred cCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHH
Confidence 456789999999999999988776522 2321 110 014678899999999
Q ss_pred HHHHHCCCcEEEEEeeeccCCCCCCCCccccChhhhhhhccCCCeeeeC
Q 009981 141 VLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSD 189 (521)
Q Consensus 141 ~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~WV~~~~~k~PDI~~tD 189 (521)
+.+++.|+.|+| .|-.|.=+....+.+|++.-..
T Consensus 93 ~yA~~rgI~VIP---------------EID~PGH~~a~l~~~pel~~~~ 126 (357)
T cd06563 93 AYAAERGITVIP---------------EIDMPGHALAALAAYPELGCTG 126 (357)
T ss_pred HHHHHcCCEEEE---------------ecCCchhHHHHHHhCccccCCC
Confidence 999999999984 4556765554445688876443
No 65
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=78.90 E-value=3.1 Score=41.48 Aligned_cols=56 Identities=14% Similarity=0.249 Sum_probs=40.6
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCccccc--chHHHHHHHHHHCCCcEEE
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDW--RGYFDLIVLASNCGLKVRA 152 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydw--s~Y~~l~~mv~~~GLKv~~ 152 (521)
...-.|.+.|+.++++|+++|++.++-. +. .+..++| ....++-++++++||+|..
T Consensus 13 ~~~~~~~e~l~~~~~~G~~~VEl~~~~~--~~-~~~~~~~~~~~~~~~~~~l~~~gl~i~~ 70 (279)
T TIGR00542 13 PKGECWLERLQLAKTCGFDFVEMSVDET--DD-RLSRLDWSREQRLALVNAIIETGVRIPS 70 (279)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEecCCc--cc-hhhccCCCHHHHHHHHHHHHHcCCCcee
Confidence 3357799999999999999999954321 11 1233444 4467788899999999963
No 66
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=77.85 E-value=5.7 Score=38.61 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecC-CCccc-------------ccchHHHHHHHHHHCCCcEEEEEee-ecc
Q 009981 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERD-RPGVY-------------DWRGYFDLIVLASNCGLKVRALLAF-HQC 159 (521)
Q Consensus 95 ~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~-~p~~Y-------------dws~Y~~l~~mv~~~GLKv~~vlsf-HqC 159 (521)
+.+.+.+.|..||++||++|-+.--+ |.. +..-| ..+.+++|++.+++.||||+.=+-+ |-+
T Consensus 2 d~~gi~~kLdyl~~lGv~~I~l~Pi~---~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~ 78 (316)
T PF00128_consen 2 DFRGIIDKLDYLKDLGVNAIWLSPIF---ESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp SHHHHHHTHHHHHHHTESEEEESS-E---ESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEE
T ss_pred CHHHHHHhhHHHHHcCCCceeccccc---ccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccc
Confidence 45678899999999999999886332 211 11112 2456889999999999999854444 544
Q ss_pred C
Q 009981 160 G 160 (521)
Q Consensus 160 G 160 (521)
.
T Consensus 79 ~ 79 (316)
T PF00128_consen 79 D 79 (316)
T ss_dssp T
T ss_pred c
Confidence 4
No 67
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=77.82 E-value=4.6 Score=40.58 Aligned_cols=54 Identities=19% Similarity=0.068 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCceEEEeeeeee---eecCCCcccccchHHHHHHHHHHCCCcEEEEEe
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGV---VERDRPGVYDWRGYFDLIVLASNCGLKVRALLA 155 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~---VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vls 155 (521)
++.|+.||++|++.|.++.= +. .+.-. +..+|..+.+.++.++++|+++.+-+=
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~-~~~s~~~~~~ai~~l~~~Gi~v~~~~i 179 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNII-STHTYDDRVDTLENAKKAGLKVCSGGI 179 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhcc-CCCCHHHHHHHHHHHHHcCCEEEEeEE
Confidence 57789999999999988732 21 11111 246888999999999999999764433
No 68
>PLN02591 tryptophan synthase
Probab=77.28 E-value=13 Score=37.82 Aligned_cols=89 Identities=16% Similarity=0.223 Sum_probs=64.2
Q ss_pred CCcceEEeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEE
Q 009981 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRAL 153 (521)
Q Consensus 74 ~~vpv~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~v 153 (521)
..+|+.+|.=...|- .-.+++=++.+|++||+||-|+-. -++.-.++.+.++++||..++.
T Consensus 77 ~~~p~ilm~Y~N~i~-------~~G~~~F~~~~~~aGv~GviipDL------------P~ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 77 LSCPIVLFTYYNPIL-------KRGIDKFMATIKEAGVHGLVVPDL------------PLEETEALRAEAAKNGIELVLL 137 (250)
T ss_pred CCCCEEEEecccHHH-------HhHHHHHHHHHHHcCCCEEEeCCC------------CHHHHHHHHHHHHHcCCeEEEE
Confidence 467988888775331 246777799999999999999832 2466788999999999999865
Q ss_pred EeeeccCCCCCCCCccccChhhhhhhccCCCeee-eCCCCc
Q 009981 154 LAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAY-SDRFGR 193 (521)
Q Consensus 154 lsfHqCGGNVGDt~~ipLP~WV~~~~~k~PDI~~-tD~~G~ 193 (521)
.+ ++.+ +..+.++.+.-++.+| +.+.|.
T Consensus 138 v~-----------Ptt~-~~ri~~ia~~~~gFIY~Vs~~Gv 166 (250)
T PLN02591 138 TT-----------PTTP-TERMKAIAEASEGFVYLVSSTGV 166 (250)
T ss_pred eC-----------CCCC-HHHHHHHHHhCCCcEEEeeCCCC
Confidence 55 5554 6788887776666443 244443
No 69
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=77.28 E-value=3.7 Score=44.16 Aligned_cols=106 Identities=15% Similarity=0.227 Sum_probs=71.4
Q ss_pred cCHHHH-----HHHHHHHHHcCCceEEEeee-eeeeecCC---Cccc----ccchHHHHHHHHHHCCCcEEEEEeeeccC
Q 009981 94 KRRKAM-----AQSFKALAAAGVEGVVVEVW-WGVVERDR---PGVY----DWRGYFDLIVLASNCGLKVRALLAFHQCG 160 (521)
Q Consensus 94 ~~~~~~-----~~dL~~LK~aGVdgV~vdVw-WG~VE~~~---p~~Y----dws~Y~~l~~mv~~~GLKv~~vlsfHqCG 160 (521)
..+..| ++++..+|++|++.|++++- |.+ +.-. |... .+ ..+++++-+++.||+|. |..|.-.
T Consensus 65 ~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~-~~~~~~~p~~~~~~~~~-~ld~~I~~a~~~gi~V~--iD~H~~~ 140 (407)
T COG2730 65 LLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWAL-QATDGDNPYLIGLTQLK-ILDEAINWAKKLGIYVL--IDLHGYP 140 (407)
T ss_pred cchhccchhhhhhHHHHHHHcCCcEEEcccchhhh-hccCCCCCCeecchHHH-HHHHHHHHHHhcCeeEE--EEecccC
Confidence 455566 99999999999999999998 654 5431 2222 24 89999999999999996 9988533
Q ss_pred C-CCCCCCccccChhhhhhhccCCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHhHhhhhhhh
Q 009981 161 S-GPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIIT 238 (521)
Q Consensus 161 G-NVGDt~~ipLP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~g~vI~ 238 (521)
| +.++. ..|... .+.+ .-+.++.|.+.-+.++.+|.. +..||.
T Consensus 141 ~~~~~~~-----~s~~~~---~~~~--------------------------~~~~~~~~~~~w~~ia~~f~~-~~~VIg 184 (407)
T COG2730 141 GGNNGHE-----HSGYTS---DYKE--------------------------ENENVEATIDIWKFIANRFKN-YDTVIG 184 (407)
T ss_pred CCCCCcC-----cccccc---cccc--------------------------cchhHHHHHHHHHHHHHhccC-CCceee
Confidence 2 22222 222222 1111 013458888888888888888 444664
No 70
>PLN02877 alpha-amylase/limit dextrinase
Probab=77.20 E-value=42 Score=40.68 Aligned_cols=145 Identities=16% Similarity=0.177 Sum_probs=78.6
Q ss_pred HHHHHHHHHHcCCceEEE-eee-eeee-ecC-----------------------------CCcccccch-----------
Q 009981 99 MAQSFKALAAAGVEGVVV-EVW-WGVV-ERD-----------------------------RPGVYDWRG----------- 135 (521)
Q Consensus 99 ~~~dL~~LK~aGVdgV~v-dVw-WG~V-E~~-----------------------------~p~~Ydws~----------- 135 (521)
.-.-|+.||++||+.|.+ +++ .+.| |.. ....|+|.|
T Consensus 375 gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgS 454 (970)
T PLN02877 375 GVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGS 454 (970)
T ss_pred HHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhcccccccCCCCCCCCCccccCCCCcc
Confidence 345588888999999986 677 6554 211 023489977
Q ss_pred -------------HHHHHHHHHHCCCcEEEEEee-eccCCCCCCCCccccChhhhhhhccCCCeeee-CCCCcccc-ccc
Q 009981 136 -------------YFDLIVLASNCGLKVRALLAF-HQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYS-DRFGRRNM-EYI 199 (521)
Q Consensus 136 -------------Y~~l~~mv~~~GLKv~~vlsf-HqCGGNVGDt~~ipLP~WV~~~~~k~PDI~~t-D~~G~r~~-Ecl 199 (521)
++++++.+.++||+|+.=+-| |...+...+ .+-.|.. ..|+-+|. |..|...+ .|-
T Consensus 455 YatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~-~~s~ld~-------~vP~YY~r~~~~G~~~ns~c~ 526 (970)
T PLN02877 455 YASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFD-ENSVLDK-------IVPGYYLRRNSDGFIENSTCV 526 (970)
T ss_pred cccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcc-hhhcccC-------CCCCceEEECCCCCcccCCcc
Confidence 899999999999999743333 443332211 1112221 34554433 55665432 222
Q ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHhHhhhhhhhcCceeeccCCCCccccccHHHHHHHHHHHHH
Q 009981 200 SLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIITKLMWSWRSRELGEFQCYDKYMLASLNACARE 269 (521)
Q Consensus 200 Slg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~g~vI~~~eWry~~PGiGEFQCYdk~~~~~fr~~a~~ 269 (521)
+ +. . |--++.++||..-.....+.|+ | +| |||+.-|+ .|+......+.++++
T Consensus 527 n----~~---A--se~~mvrklIlDsl~yW~~ey~-V--DG-FRFDlmg~-----i~~~tm~~~~~~L~~ 578 (970)
T PLN02877 527 N----NT---A--SEHYMVDRLIVDDLLNWAVNYK-V--DG-FRFDLMGH-----LMKRTMVRAKDALQS 578 (970)
T ss_pred C----CC---c--cCCHHHHHHHHHHHHHHHHHhC-C--CE-EEEEcccc-----ccHHHHHHHHHHHHH
Confidence 2 21 1 2124455555444444444342 3 33 99965553 344444555655554
No 71
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=77.15 E-value=5.3 Score=45.28 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=41.0
Q ss_pred CHHHHHHHH-HHHHHcCCceEEE-eeeeeeeecCCCcccccc-----------------hHHHHHHHHHHCCCcEEEEEe
Q 009981 95 RRKAMAQSF-KALAAAGVEGVVV-EVWWGVVERDRPGVYDWR-----------------GYFDLIVLASNCGLKVRALLA 155 (521)
Q Consensus 95 ~~~~~~~dL-~~LK~aGVdgV~v-dVwWG~VE~~~p~~Ydws-----------------~Y~~l~~mv~~~GLKv~~vls 155 (521)
+-+.+.+.| ..||++||+.|.+ +++.. |...+|. .++++++.+.++||+|+.=+-
T Consensus 154 ~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~------~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V 227 (613)
T TIGR01515 154 SYRELADQLIPYVKELGFTHIELLPVAEH------PFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWV 227 (613)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccC------CCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 356777786 9999999999999 66532 2222222 489999999999999985444
Q ss_pred e
Q 009981 156 F 156 (521)
Q Consensus 156 f 156 (521)
+
T Consensus 228 ~ 228 (613)
T TIGR01515 228 P 228 (613)
T ss_pred c
Confidence 4
No 72
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=76.99 E-value=24 Score=36.16 Aligned_cols=91 Identities=14% Similarity=0.212 Sum_probs=66.2
Q ss_pred CCCcceEEeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEE
Q 009981 73 RNGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRA 152 (521)
Q Consensus 73 ~~~vpv~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~ 152 (521)
...+|+.+|.=+..|- .-.+++=++.++++||+||-|..- | ++..+++++.++++||+.+.
T Consensus 89 ~~~~p~vlm~Y~N~i~-------~~G~e~F~~~~~~aGvdgviipDL--------P----~ee~~~~~~~~~~~gi~~I~ 149 (263)
T CHL00200 89 EIKAPIVIFTYYNPVL-------HYGINKFIKKISQAGVKGLIIPDL--------P----YEESDYLISVCNLYNIELIL 149 (263)
T ss_pred CCCCCEEEEecccHHH-------HhCHHHHHHHHHHcCCeEEEecCC--------C----HHHHHHHHHHHHHcCCCEEE
Confidence 3578988887774331 235677799999999999999865 1 24578999999999999997
Q ss_pred EEeeeccCCCCCCCCccccChhhhhhhccCCC-eeeeCCCCcc
Q 009981 153 LLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPD-LAYSDRFGRR 194 (521)
Q Consensus 153 vlsfHqCGGNVGDt~~ipLP~WV~~~~~k~PD-I~~tD~~G~r 194 (521)
+++ |+- .+..+.++.+.-.. |+++.+.|..
T Consensus 150 lv~-----------PtT-~~eri~~i~~~a~gFIY~vS~~GvT 180 (263)
T CHL00200 150 LIA-----------PTS-SKSRIQKIARAAPGCIYLVSTTGVT 180 (263)
T ss_pred EEC-----------CCC-CHHHHHHHHHhCCCcEEEEcCCCCC
Confidence 777 554 36788777665554 5555777754
No 73
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=76.51 E-value=28 Score=34.89 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=45.2
Q ss_pred CcceEEeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEE
Q 009981 75 GSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALL 154 (521)
Q Consensus 75 ~vpv~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vl 154 (521)
.+|+.+|.=++.+- ...+++=++.++++|++||.++-- | .+...++++.++++|++.++.+
T Consensus 76 ~~pv~lm~y~n~~~-------~~G~~~fi~~~~~aG~~giiipDl--------~----~ee~~~~~~~~~~~g~~~i~~i 136 (242)
T cd04724 76 TIPIVLMGYYNPIL-------QYGLERFLRDAKEAGVDGLIIPDL--------P----PEEAEEFREAAKEYGLDLIFLV 136 (242)
T ss_pred CCCEEEEEecCHHH-------HhCHHHHHHHHHHCCCcEEEECCC--------C----HHHHHHHHHHHHHcCCcEEEEe
Confidence 67888885543211 122466789999999999999632 1 1367899999999999998777
Q ss_pred e
Q 009981 155 A 155 (521)
Q Consensus 155 s 155 (521)
+
T Consensus 137 ~ 137 (242)
T cd04724 137 A 137 (242)
T ss_pred C
Confidence 6
No 74
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=76.48 E-value=5.4 Score=42.43 Aligned_cols=65 Identities=26% Similarity=0.360 Sum_probs=44.7
Q ss_pred eecCHHHH-HHHHHHHHHcCCceEEEeeeeeeeec----CCCcccccchHHHHHHHHHHCCCcEEEEEeeec
Q 009981 92 KVKRRKAM-AQSFKALAAAGVEGVVVEVWWGVVER----DRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQ 158 (521)
Q Consensus 92 ~v~~~~~~-~~dL~~LK~aGVdgV~vdVwWG~VE~----~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHq 158 (521)
++-|.... +.-|..||++||+-|++-+|=-=-.. -+-|.=|-..--++.+.+++.|+||. +-||-
T Consensus 57 kf~d~ng~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl--~dFHY 126 (403)
T COG3867 57 KFFDTNGVRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVL--LDFHY 126 (403)
T ss_pred eEEccCChHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEE--eeccc
Confidence 33333333 34478899999999999999221111 12445566667788888899999995 99993
No 75
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=76.29 E-value=8.2 Score=39.99 Aligned_cols=95 Identities=13% Similarity=-0.007 Sum_probs=58.3
Q ss_pred HHHHHHHcCCceEEEeeeeeeeecCCCcccc---cchHHHHHHHHHHC--CCcEEEEEeeeccCCCCCCCCccccChhhh
Q 009981 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYD---WRGYFDLIVLASNC--GLKVRALLAFHQCGSGPGDPKWVPLPQWVL 176 (521)
Q Consensus 102 dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Yd---ws~Y~~l~~mv~~~--GLKv~~vlsfHqCGGNVGDt~~ipLP~WV~ 176 (521)
-++++.++|++++.+..=|+-+ -+|.+|+ +-+++++++-+++. +..+ | |-|||. -++-.++.
T Consensus 185 ~~~~~~eaGad~i~i~d~~~~~--lsp~~f~ef~~p~~k~i~~~i~~~~~~~~i---l--h~cg~~------~~~~~~~~ 251 (338)
T TIGR01464 185 YLVEQVKAGAQAVQIFDSWAGA--LSPEDFEEFVLPYLKKIIEEVKARLPNVPV---I--LFAKGA------GHLLEELA 251 (338)
T ss_pred HHHHHHHcCCCEEEEECCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCE---E--EEeCCc------HHHHHHHH
Confidence 3344667999998865546643 4577887 99999999999997 4443 3 457643 24555666
Q ss_pred hhhccCCCeeeeCCCCcccccccccccCcccccCCCC
Q 009981 177 EEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRS 213 (521)
Q Consensus 177 ~~~~k~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRT 213 (521)
+ ...|++-.|..- --.|.....-|++.+.+|-.
T Consensus 252 ~---~~~~~~s~d~~~-dl~e~~~~~~~~~~i~Gni~ 284 (338)
T TIGR01464 252 E---TGADVVGLDWTV-DLKEARKRVGPGVAIQGNLD 284 (338)
T ss_pred h---cCCCEEEeCCCC-CHHHHHHHhCCCeeEEeCCC
Confidence 6 345888777642 22233333334444544443
No 76
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=76.29 E-value=4.3 Score=43.17 Aligned_cols=80 Identities=20% Similarity=0.191 Sum_probs=54.4
Q ss_pred CcceEEeeecceecCC-----Ce----ecCHHHHHH-----------HHHHHHHcCCce-EEEeee--eeeeecCCCccc
Q 009981 75 GSPVFVKLPEDSTMIG-----GK----VKRRKAMAQ-----------SFKALAAAGVEG-VVVEVW--WGVVERDRPGVY 131 (521)
Q Consensus 75 ~vpv~VMlPLd~v~~~-----~~----v~~~~~~~~-----------dL~~LK~aGVdg-V~vdVw--WG~VE~~~p~~Y 131 (521)
.+-..+..|++++... +. +++|+.+.+ -+++..++|+++ |.+..+ |+.+= +|.+|
T Consensus 172 pi~~~~~gPf~~la~~l~g~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~l--sp~~f 249 (378)
T cd03308 172 NAGGVSEAPFDIIGDYLRGFKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPFL--RPKQF 249 (378)
T ss_pred ccceeEeCChHHHHHHHhCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCcc--CHHHH
Confidence 3556788899866521 11 234544443 345566789998 777777 54332 46677
Q ss_pred c---cchHHHHHHHHHHCCCcEEEEEeeeccC
Q 009981 132 D---WRGYFDLIVLASNCGLKVRALLAFHQCG 160 (521)
Q Consensus 132 d---ws~Y~~l~~mv~~~GLKv~~vlsfHqCG 160 (521)
+ |-+++++++-+++.|.+++ + |-||
T Consensus 250 ~ef~~P~~k~i~~~i~~~g~~~i--l--h~cG 277 (378)
T cd03308 250 EKFYWPSFKKVVEGLAARGQRIF--L--FFEG 277 (378)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEE--E--EcCC
Confidence 6 9999999999999987764 3 8998
No 77
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=75.33 E-value=42 Score=37.82 Aligned_cols=66 Identities=15% Similarity=0.303 Sum_probs=46.9
Q ss_pred ecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccc-------------cchHHHHHHHHHHCCCcEEEEEeeecc
Q 009981 93 VKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYD-------------WRGYFDLIVLASNCGLKVRALLAFHQC 159 (521)
Q Consensus 93 v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Yd-------------ws~Y~~l~~mv~~~GLKv~~vlsfHqC 159 (521)
.-+-+.+.+.|..||++||++|-+.-.+-. +..+..|+ .+.++++++.++++||||+.=+-+--|
T Consensus 29 ~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~ 106 (551)
T PRK10933 29 TGDLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHT 106 (551)
T ss_pred CcCHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence 457889999999999999999977554311 11122332 245899999999999999866665433
Q ss_pred C
Q 009981 160 G 160 (521)
Q Consensus 160 G 160 (521)
+
T Consensus 107 s 107 (551)
T PRK10933 107 S 107 (551)
T ss_pred c
Confidence 3
No 78
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=74.10 E-value=6.1 Score=39.31 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=45.6
Q ss_pred eecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeee-eeeeecCCCcccccc--hHHHHHHHHHHCCCcEEEE
Q 009981 82 LPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWR--GYFDLIVLASNCGLKVRAL 153 (521)
Q Consensus 82 lPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVw-WG~VE~~~p~~Ydws--~Y~~l~~mv~~~GLKv~~v 153 (521)
+||.+..- .++..-.|++.++.+|++|.++|++.+. ... ....++|+ ..+++-++++++||+|..+
T Consensus 8 ~~~~~~~~--~~~~~~~~~e~~~~~~~~G~~~iEl~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~gl~i~~~ 76 (283)
T PRK13209 8 IPLGIYEK--ALPAGECWLEKLAIAKTAGFDFVEMSVDESDE----RLARLDWSREQRLALVNALVETGFRVNSM 76 (283)
T ss_pred ccceeecc--cCCCCCCHHHHHHHHHHcCCCeEEEecCcccc----chhccCCCHHHHHHHHHHHHHcCCceeEE
Confidence 45555432 3444557999999999999999999643 110 12334555 3678999999999999743
No 79
>PLN00196 alpha-amylase; Provisional
Probab=73.95 E-value=56 Score=35.86 Aligned_cols=64 Identities=19% Similarity=0.118 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCccc------cc--------chHHHHHHHHHHCCCcEEEEEeeeccC
Q 009981 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVY------DW--------RGYFDLIVLASNCGLKVRALLAFHQCG 160 (521)
Q Consensus 95 ~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Y------dw--------s~Y~~l~~mv~~~GLKv~~vlsfHqCG 160 (521)
..+.+.+.|..||++||+.|-+.-- .|+.++..| +- +.|+++++.+++.||||++=+-+--|+
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~---~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~ 118 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPP---SHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 118 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCC---CCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCcc
Confidence 5788999999999999999988752 233333333 22 259999999999999998666554454
Q ss_pred C
Q 009981 161 S 161 (521)
Q Consensus 161 G 161 (521)
+
T Consensus 119 ~ 119 (428)
T PLN00196 119 A 119 (428)
T ss_pred c
Confidence 3
No 80
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=72.80 E-value=49 Score=37.09 Aligned_cols=66 Identities=12% Similarity=0.241 Sum_probs=49.0
Q ss_pred ecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCccc-------------ccchHHHHHHHHHHCCCcEEEEEeeecc
Q 009981 93 VKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVY-------------DWRGYFDLIVLASNCGLKVRALLAFHQC 159 (521)
Q Consensus 93 v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Y-------------dws~Y~~l~~mv~~~GLKv~~vlsfHqC 159 (521)
+-+-+.+.+.|..||++||++|-+.-..-.-+ ....| ....++++++.++++||||+.=+-+.-|
T Consensus 23 ~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~ 100 (543)
T TIGR02403 23 TGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQ--KDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHT 100 (543)
T ss_pred ccCHHHHHHhHHHHHHcCCCEEEECCcccCCC--CCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECcccc
Confidence 45778999999999999999998765532211 11234 2356899999999999999877777555
Q ss_pred C
Q 009981 160 G 160 (521)
Q Consensus 160 G 160 (521)
+
T Consensus 101 ~ 101 (543)
T TIGR02403 101 S 101 (543)
T ss_pred c
Confidence 4
No 81
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=72.59 E-value=9.8 Score=42.65 Aligned_cols=61 Identities=21% Similarity=0.285 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccch-----------------HHHHHHHHHHCCCcEEEEEeee
Q 009981 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRG-----------------YFDLIVLASNCGLKVRALLAFH 157 (521)
Q Consensus 95 ~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~-----------------Y~~l~~mv~~~GLKv~~vlsfH 157 (521)
+-..+.+.|..||++||++|.+-=- .| .++.++|.+ ++++++.++++||+|+.=+-+-
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~Pi---~~--~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMPV---AQ--FPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcc---cc--CCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 5578888999999999999976421 11 244556643 8999999999999998655553
Q ss_pred ccC
Q 009981 158 QCG 160 (521)
Q Consensus 158 qCG 160 (521)
-||
T Consensus 184 H~~ 186 (542)
T TIGR02402 184 HFG 186 (542)
T ss_pred CCC
Confidence 343
No 82
>PLN02808 alpha-galactosidase
Probab=71.92 E-value=11 Score=40.95 Aligned_cols=58 Identities=26% Similarity=0.352 Sum_probs=46.4
Q ss_pred cCHHHHHHHHHH-----HHHcCCceEEEeeeeeeeecCCCcccc-----c-chHHHHHHHHHHCCCcEE
Q 009981 94 KRRKAMAQSFKA-----LAAAGVEGVVVEVWWGVVERDRPGVYD-----W-RGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 94 ~~~~~~~~dL~~-----LK~aGVdgV~vdVwWG~VE~~~p~~Yd-----w-s~Y~~l~~mv~~~GLKv~ 151 (521)
.+++.+.+...+ ||++|.+-|.||.-|...++.+.|..- | ++.+.|++.|++.|||.=
T Consensus 46 i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~GlkfG 114 (386)
T PLN02808 46 INETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHSKGLKLG 114 (386)
T ss_pred CCHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHHCCCceE
Confidence 467888888887 599999999999999776655445322 2 689999999999999964
No 83
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=71.18 E-value=13 Score=33.35 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHC-CCcEEEEEeee
Q 009981 96 RKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNC-GLKVRALLAFH 157 (521)
Q Consensus 96 ~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~-GLKv~~vlsfH 157 (521)
.+.+...++.||+.|||.|.+..= ++-....+ -=-.++++.+++++. |++|+ ..||
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC--~~~~~~~~--~CP~~~~~~~~I~~~~gi~VV--~GTH 107 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSC--MVKGNPHG--PCPHIDEIKKIIEEKFGIEVV--EGTH 107 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCC--EecCCCCC--CCCCHHHHHHHHHHHhCCCEe--eecC
Confidence 678889999999999999888754 22211111 333499999999999 99885 8887
No 84
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=70.97 E-value=4.7 Score=40.84 Aligned_cols=46 Identities=13% Similarity=0.204 Sum_probs=33.1
Q ss_pred ecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEE
Q 009981 93 VKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRA 152 (521)
Q Consensus 93 v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~ 152 (521)
-.+.+.+++||+.||++|+|.|++-.. .++ .++.++|-+.||-|+.
T Consensus 32 a~~~~~~~~d~~l~k~~G~N~iR~~h~---p~~-----------~~~~~~cD~~GilV~~ 77 (298)
T PF02836_consen 32 AMPDEAMERDLELMKEMGFNAIRTHHY---PPS-----------PRFYDLCDELGILVWQ 77 (298)
T ss_dssp ---HHHHHHHHHHHHHTT-SEEEETTS-----S-----------HHHHHHHHHHT-EEEE
T ss_pred cCCHHHHHHHHHHHHhcCcceEEcccc---cCc-----------HHHHHHHhhcCCEEEE
Confidence 457799999999999999999998322 221 4788999999999963
No 85
>PRK12313 glycogen branching enzyme; Provisional
Probab=70.20 E-value=9.4 Score=43.40 Aligned_cols=74 Identities=14% Similarity=0.135 Sum_probs=47.4
Q ss_pred ceEEeeecceec-CCCeecCHHHHHHHH-HHHHHcCCceEEE-eeeeeeeecCCCcccccc-----------------hH
Q 009981 77 PVFVKLPEDSTM-IGGKVKRRKAMAQSF-KALAAAGVEGVVV-EVWWGVVERDRPGVYDWR-----------------GY 136 (521)
Q Consensus 77 pv~VMlPLd~v~-~~~~v~~~~~~~~dL-~~LK~aGVdgV~v-dVwWG~VE~~~p~~Ydws-----------------~Y 136 (521)
-+|-+-+=+--. ..+..-+-+.+.+.| ..||++||+.|.+ +++ | .|...+|. .+
T Consensus 149 ~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~----~--~~~~~~~GY~~~~y~~i~~~~Gt~~d~ 222 (633)
T PRK12313 149 SIYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMGYTHVEFMPLM----E--HPLDGSWGYQLTGYFAPTSRYGTPEDF 222 (633)
T ss_pred eEEEEehhccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEeCchh----c--CCCCCCCCCCCcCcCcCCCCCCCHHHH
Confidence 345554443111 223344556777775 9999999999985 333 1 13333343 49
Q ss_pred HHHHHHHHHCCCcEEEEEee
Q 009981 137 FDLIVLASNCGLKVRALLAF 156 (521)
Q Consensus 137 ~~l~~mv~~~GLKv~~vlsf 156 (521)
+++++.++++||+|+.=+-+
T Consensus 223 k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 223 MYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHCCCEEEEEECC
Confidence 99999999999999854444
No 86
>PHA00442 host recBCD nuclease inhibitor
Probab=69.87 E-value=7.5 Score=31.53 Aligned_cols=27 Identities=37% Similarity=0.792 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHC
Q 009981 101 QSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNC 146 (521)
Q Consensus 101 ~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~ 146 (521)
.-|.+|++.||| ||++|.+..+|+.+.
T Consensus 30 ~~L~~Lea~GVD-------------------NW~Gy~eA~emv~~e 56 (59)
T PHA00442 30 EFLKALRACGVD-------------------NWDGYMDAVEMVAEE 56 (59)
T ss_pred HHHHHHHHcCCc-------------------chhhHHHHHHHHhhh
Confidence 346777788885 899999999998754
No 87
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=69.61 E-value=51 Score=34.74 Aligned_cols=158 Identities=16% Similarity=0.218 Sum_probs=93.8
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEee----eeeee--------ec--------CCCcccccchHHHHHHHHHHCCCcEE
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEV----WWGVV--------ER--------DRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdV----wWG~V--------E~--------~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
.+-+.+.|++.|..|...++|...+-. -|-+- +. ...|.|.=+-+++|++.+++.|+.|+
T Consensus 13 ~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vI 92 (329)
T cd06568 13 HFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVV 92 (329)
T ss_pred CCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 467889999999999999988776533 14321 11 11356888889999999999999998
Q ss_pred EEEeeeccCCCCCCCCccccChhhhhhhccCCCeeeeCCCCccccc--ccccccCcccccCCCCchHHHHHHHHHHHHHH
Q 009981 152 ALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNME--YISLGCDILPVLRGRSPIQAYTDFMRNFRDTF 229 (521)
Q Consensus 152 ~vlsfHqCGGNVGDt~~ipLP~WV~~~~~k~PDI~~tD~~G~r~~E--clSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~f 229 (521)
|.|-.|.=+....+.+|++.-. |..... +...+++.+ .-.. +.=.+|++++-+++
T Consensus 93 ---------------PEiD~PGH~~a~~~~~p~l~~~---~~~~~~~~~~~~~~~~l---~~~~--~~t~~fl~~v~~E~ 149 (329)
T cd06568 93 ---------------PEIDMPGHTNAALAAYPELNCD---GKAKPLYTGIEVGFSSL---DVDK--PTTYEFVDDVFREL 149 (329)
T ss_pred ---------------EecCCcHHHHHHHHhChhhccC---CCCCccccccCCCCccc---CCCC--HHHHHHHHHHHHHH
Confidence 4555777665555578886432 211111 111112211 1112 33346777777777
Q ss_pred hHhhhh-hhh--cCceeeccCCCCccccccHHHHHHHHHHHHHhcc--cccCCC
Q 009981 230 RPLLGA-IIT--KLMWSWRSRELGEFQCYDKYMLASLNACAREIGM--REWGDG 278 (521)
Q Consensus 230 a~~~g~-vI~--~~eWry~~PGiGEFQCYdk~~~~~fr~~a~~~gn--~~WG~~ 278 (521)
.+.+.+ .|- .-| + ++.+. .-|. +....+.+.+++.|. -.|+..
T Consensus 150 ~~~f~~~~iHiGgDE--~--~~~~~-~~~~-~f~~~~~~~v~~~Gk~~~~W~d~ 197 (329)
T cd06568 150 AALTPGPYIHIGGDE--A--HSTPH-DDYA-YFVNRVRAIVAKYGKTPVGWQEI 197 (329)
T ss_pred HHhCCCCeEEEeccc--C--CCCch-HHHH-HHHHHHHHHHHHCCCeEEEECcc
Confidence 777754 333 233 4 33332 1232 345667777777664 567753
No 88
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=69.37 E-value=6.4 Score=40.56 Aligned_cols=55 Identities=18% Similarity=0.162 Sum_probs=40.8
Q ss_pred HHHHHHHHcCCceEEEeeeeeeeecCCCcccc---cchHHHHHHHHHHCCCcEEEEEeeeccCC
Q 009981 101 QSFKALAAAGVEGVVVEVWWGVVERDRPGVYD---WRGYFDLIVLASNCGLKVRALLAFHQCGS 161 (521)
Q Consensus 101 ~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Yd---ws~Y~~l~~mv~~~GLKv~~vlsfHqCGG 161 (521)
+-+++..++|+++|.+..-|+...=-+|..|. +-+++++++.+++ + .+ -.|-||+
T Consensus 175 ~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~-~-~~----ilh~cG~ 232 (326)
T cd03307 175 EYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG-C-PT----ILHICGN 232 (326)
T ss_pred HHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc-C-Cc----EEEECCC
Confidence 45566678999999998889844322577777 9999999999998 2 22 2488874
No 89
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=69.21 E-value=62 Score=34.21 Aligned_cols=84 Identities=12% Similarity=0.072 Sum_probs=61.5
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEee----eeeeeec-------C----CCcccccchHHHHHHHHHHCCCcEEEEEee
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEV----WWGVVER-------D----RPGVYDWRGYFDLIVLASNCGLKVRALLAF 156 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdV----wWG~VE~-------~----~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsf 156 (521)
..-+.+.+++-|..|....+|...+-. -|-+--+ . ..+.|.=+-+++|++.+++.||.|+
T Consensus 13 ~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vI----- 87 (348)
T cd06562 13 HFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVI----- 87 (348)
T ss_pred cCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEE-----
Confidence 456789999999999999998876532 2333111 1 1466889999999999999999998
Q ss_pred eccCCCCCCCCccccChhhhhhhccCCCeeeeCC
Q 009981 157 HQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDR 190 (521)
Q Consensus 157 HqCGGNVGDt~~ipLP~WV~~~~~k~PDI~~tD~ 190 (521)
|.|-.|.=.....+.+|++.....
T Consensus 88 ----------PEID~PGH~~a~~~~~p~l~~~~~ 111 (348)
T cd06562 88 ----------PEIDTPGHTGSWGQGYPELLTGCY 111 (348)
T ss_pred ----------EeccCchhhHHHHHhChhhhCCCC
Confidence 455578766666667888765543
No 90
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=68.65 E-value=85 Score=37.85 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCceEEE-eee-eeee
Q 009981 99 MAQSFKALAAAGVEGVVV-EVW-WGVV 123 (521)
Q Consensus 99 ~~~dL~~LK~aGVdgV~v-dVw-WG~V 123 (521)
.-.-|+.||++||+.|.+ +++ ++.|
T Consensus 288 gi~hLk~L~eLGVThVeLLPv~df~tv 314 (898)
T TIGR02103 288 GVQHLKKLADAGVTHLHLLPTFDIATV 314 (898)
T ss_pred hhHHHHHHHhCCCcEEEEcChhhcCcc
Confidence 345688888999999985 677 7755
No 91
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=67.96 E-value=3.3 Score=38.09 Aligned_cols=44 Identities=27% Similarity=0.232 Sum_probs=34.8
Q ss_pred HHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 103 FKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 103 L~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
|+.++++|+++|.+..++..-... + -...+++.++++++||++.
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~-~----~~~~~~~~~~~~~~gl~i~ 44 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDE-K----DDEAEELRRLLEDYGLKIA 44 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTH-H----HHHHHHHHHHHHHTTCEEE
T ss_pred ChHHHHcCCCEEEEecCCCccccc-c----hHHHHHHHHHHHHcCCeEE
Confidence 688999999999999885433321 0 3578899999999999986
No 92
>PRK10150 beta-D-glucuronidase; Provisional
Probab=67.51 E-value=13 Score=41.75 Aligned_cols=46 Identities=11% Similarity=0.013 Sum_probs=36.7
Q ss_pred ecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEE
Q 009981 93 VKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRA 152 (521)
Q Consensus 93 v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~ 152 (521)
-.+++++.+||+.||++|+|.|++-. ..+ -.++.++|-+.||-|+.
T Consensus 309 a~~~~~~~~d~~l~K~~G~N~vR~sh---~p~-----------~~~~~~~cD~~GllV~~ 354 (604)
T PRK10150 309 GLDEVLNVHDHNLMKWIGANSFRTSH---YPY-----------SEEMLDLADRHGIVVID 354 (604)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEecc---CCC-----------CHHHHHHHHhcCcEEEE
Confidence 35778899999999999999999931 111 14789999999999874
No 93
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=67.28 E-value=17 Score=38.85 Aligned_cols=85 Identities=14% Similarity=0.171 Sum_probs=56.7
Q ss_pred cCHHHHHHHHHHHHHcC--CceEEEeeeeeeeecCCCcccccc-----hHHHHHHHHHHCCCcEEEEEeeeccCCCCCCC
Q 009981 94 KRRKAMAQSFKALAAAG--VEGVVVEVWWGVVERDRPGVYDWR-----GYFDLIVLASNCGLKVRALLAFHQCGSGPGDP 166 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aG--VdgV~vdVwWG~VE~~~p~~Ydws-----~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt 166 (521)
.+.+.+.+-++.+++.| ++++.+|.+|..- -+.|.|+ ..+++++.+++.|+|++ +..|
T Consensus 40 ~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~~----~~~f~~d~~~FPd~~~~~~~l~~~G~~~~--~~~~--------- 104 (441)
T PF01055_consen 40 YNQDEVREVIDRYRSNGIPLDVIWIDDDYQDG----YGDFTWDPERFPDPKQMIDELHDQGIKVV--LWVH--------- 104 (441)
T ss_dssp TSHHHHHHHHHHHHHTT--EEEEEE-GGGSBT----TBTT-B-TTTTTTHHHHHHHHHHTT-EEE--EEEE---------
T ss_pred CCHHHHHHHHHHHHHcCCCccceecccccccc----ccccccccccccchHHHHHhHhhCCcEEE--EEee---------
Confidence 56888999999999866 5889999887761 3345544 58999999999999997 4443
Q ss_pred CccccChh---hhhhhccCCCeeeeCCCCcc
Q 009981 167 KWVPLPQW---VLEEIDKDPDLAYSDRFGRR 194 (521)
Q Consensus 167 ~~ipLP~W---V~~~~~k~PDI~~tD~~G~r 194 (521)
|.|....- ..+++.+ .+++.++.+|..
T Consensus 105 P~v~~~~~~~~~~~~~~~-~~~~v~~~~g~~ 134 (441)
T PF01055_consen 105 PFVSNDSPDYENYDEAKE-KGYLVKNPDGSP 134 (441)
T ss_dssp SEEETTTTB-HHHHHHHH-TT-BEBCTTSSB
T ss_pred cccCCCCCcchhhhhHhh-cCceeecccCCc
Confidence 45554443 3333333 388999998843
No 94
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=66.52 E-value=13 Score=38.93 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=36.5
Q ss_pred HHHHHc-CCceEEEeeeeeeeec--CCCcccc---cchHHHHHHHHHHC-CCcEEEEEeeeccC
Q 009981 104 KALAAA-GVEGVVVEVWWGVVER--DRPGVYD---WRGYFDLIVLASNC-GLKVRALLAFHQCG 160 (521)
Q Consensus 104 ~~LK~a-GVdgV~vdVwWG~VE~--~~p~~Yd---ws~Y~~l~~mv~~~-GLKv~~vlsfHqCG 160 (521)
++..++ |+++|.+-.-|+...+ -+|..|. |-+++++++.+++. |..+ .+|.||
T Consensus 162 ~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~pi----ilH~cG 221 (321)
T cd03309 162 ERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSALI----VHHSCG 221 (321)
T ss_pred HHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCce----EEEeCC
Confidence 333445 9999998766775211 1244555 99999999999998 4443 358898
No 95
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=66.44 E-value=55 Score=34.21 Aligned_cols=85 Identities=18% Similarity=0.198 Sum_probs=57.2
Q ss_pred ecCHHHHHHHHHHHHHcCC--ceEEEeeeeeeeecCCCcccccc-----hHHHHHHHHHHCCCcEEEEEeeeccCCCCCC
Q 009981 93 VKRRKAMAQSFKALAAAGV--EGVVVEVWWGVVERDRPGVYDWR-----GYFDLIVLASNCGLKVRALLAFHQCGSGPGD 165 (521)
Q Consensus 93 v~~~~~~~~dL~~LK~aGV--dgV~vdVwWG~VE~~~p~~Ydws-----~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGD 165 (521)
.++.+.+.+-++.+++.|| |+|.+|.-|.. +-+.|+|. --+++++.+++.|+|+++++.
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~---------- 85 (339)
T cd06604 20 YYPEEEVREIADEFRERDIPCDAIYLDIDYMD----GYRVFTWDKERFPDPKELIKELHEQGFKVVTIID---------- 85 (339)
T ss_pred CCCHHHHHHHHHHHHHhCCCcceEEECchhhC----CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEe----------
Confidence 4577888999999998774 88888866541 23335444 368999999999999975543
Q ss_pred CCcccc-C-hhhhhhhccCCCeeeeCCCCc
Q 009981 166 PKWVPL-P-QWVLEEIDKDPDLAYSDRFGR 193 (521)
Q Consensus 166 t~~ipL-P-~WV~~~~~k~PDI~~tD~~G~ 193 (521)
|.|.. | .-+.+++.+ .+.|.++.+|.
T Consensus 86 -P~v~~~~~~~~~~e~~~-~g~~v~~~~g~ 113 (339)
T cd06604 86 -PGVKVDPGYDVYEEGLE-NDYFVKDPDGE 113 (339)
T ss_pred -CceeCCCCChHHHHHHH-CCeEEECCCCC
Confidence 33332 1 123344443 37888888885
No 96
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=66.28 E-value=15 Score=36.36 Aligned_cols=48 Identities=21% Similarity=0.525 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHcCCceEEEeeeeeeeecCCCccc--cc--chHHHHHHHHHHCCCcEEE
Q 009981 98 AMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVY--DW--RGYFDLIVLASNCGLKVRA 152 (521)
Q Consensus 98 ~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Y--dw--s~Y~~l~~mv~~~GLKv~~ 152 (521)
-+++.|+.++++|+++|++ |+.. +..| ++ ..-+++-+++.++||+|..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl---~~~~----~~~~~~~~~~~~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEI---WGGR----PHAFAPDLKAGGIKQIKALAQTYQMPIIG 65 (275)
T ss_pred CHHHHHHHHHHcCCCEEEE---ccCC----ccccccccCchHHHHHHHHHHHcCCeEEE
Confidence 5899999999999999998 3210 1111 12 2568889999999999853
No 97
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=66.14 E-value=81 Score=35.24 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=48.3
Q ss_pred ecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCC-Ccccc-------------cchHHHHHHHHHHCCCcEEEEEeeec
Q 009981 93 VKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDR-PGVYD-------------WRGYFDLIVLASNCGLKVRALLAFHQ 158 (521)
Q Consensus 93 v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~-p~~Yd-------------ws~Y~~l~~mv~~~GLKv~~vlsfHq 158 (521)
.-|-+.+.+.|..||++||++|-+.-.. |..+ ...|+ ...+++|++.+++.||||+.=+-+.-
T Consensus 24 ~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~---~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH 100 (539)
T TIGR02456 24 IGDFPGLTSKLDYLKWLGVDALWLLPFF---QSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNH 100 (539)
T ss_pred ccCHHHHHHhHHHHHHCCCCEEEECCCc---CCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 5677899999999999999999776542 2211 22332 35789999999999999987666655
Q ss_pred cC
Q 009981 159 CG 160 (521)
Q Consensus 159 CG 160 (521)
++
T Consensus 101 ~s 102 (539)
T TIGR02456 101 TS 102 (539)
T ss_pred CC
Confidence 54
No 98
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=65.77 E-value=6.6 Score=40.48 Aligned_cols=55 Identities=18% Similarity=0.161 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCCcccc---cchHHHHHHHHHHCCCcEEEEEeeeccC
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGVYD---WRGYFDLIVLASNCGLKVRALLAFHQCG 160 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Yd---ws~Y~~l~~mv~~~GLKv~~vlsfHqCG 160 (521)
.+-++++.++|+++|.+..=|+.-.--+|..|. +-+++++++-+++. . ...|-||
T Consensus 183 ~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~----~--~ilH~cG 240 (339)
T PRK06252 183 IEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL----P--TILHICG 240 (339)
T ss_pred HHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC----C--cEEEECC
Confidence 445566778999999998888742223455565 88999999999876 2 2357787
No 99
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=65.05 E-value=14 Score=38.35 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=47.5
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecC----CCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCC
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERD----RPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPG 164 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~----~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVG 164 (521)
.+-+..++-+....+.|++.|.||..|..-+.. --..+.+....+|++-+++.|.+|....- |..+||+.
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~-~~~~~~~~ 102 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYH-SETGGNVA 102 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEE-CCHTTBHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEe-CCcchhhH
Confidence 366788888899999999999999999763321 12466789999999999999999973332 44555553
No 100
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=64.83 E-value=26 Score=37.08 Aligned_cols=90 Identities=21% Similarity=0.217 Sum_probs=60.6
Q ss_pred HHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccChhhhhhhc
Q 009981 101 QSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEID 180 (521)
Q Consensus 101 ~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~WV~~~~~ 180 (521)
+||+...+.||+.|+|..-+... .--.+.++.+|+.|+++++.+.. ....-|..+.+..+
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~----------~~~~~~i~~ak~~G~~v~~~l~~----------a~~~~~e~l~~~a~ 151 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEA----------DVSEQHIGLARELGMDTVGFLMM----------SHMAPPEKLAEQAK 151 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchH----------HHHHHHHHHHHHCCCeEEEEEEe----------ccCCCHHHHHHHHH
Confidence 67999999999999998744332 24689999999999999877662 23345666665332
Q ss_pred c----CCC-eeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHH
Q 009981 181 K----DPD-LAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTF 229 (521)
Q Consensus 181 k----~PD-I~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~f 229 (521)
+ -+| |.++|-.|.- +| +.-.++.+.+++++
T Consensus 152 ~~~~~Ga~~i~i~DT~G~~------------------~P-~~v~~~v~~l~~~l 186 (337)
T PRK08195 152 LMESYGAQCVYVVDSAGAL------------------LP-EDVRDRVRALRAAL 186 (337)
T ss_pred HHHhCCCCEEEeCCCCCCC------------------CH-HHHHHHHHHHHHhc
Confidence 1 234 5667777742 46 44455666666655
No 101
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=64.55 E-value=43 Score=34.10 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccChhhhhhh
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEI 179 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~WV~~~~ 179 (521)
.++|+.....||+.|+|.+ ...+++...+.++.+++.|++|.+-+.. .+-.-|..+.+..
T Consensus 85 ~~~l~~a~~~gv~~iri~~----------~~~~~~~~~~~i~~ak~~G~~v~~~~~~----------a~~~~~~~~~~~~ 144 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAF----------HKHEFDEALPLIKAIKEKGYEVFFNLMA----------ISGYSDEELLELL 144 (266)
T ss_pred HHHHHHHhcCCcCEEEEec----------ccccHHHHHHHHHHHHHCCCeEEEEEEe----------ecCCCHHHHHHHH
Confidence 4578888999999999965 1237888999999999999999876662 2224477777643
Q ss_pred c----cCCC-eeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHh
Q 009981 180 D----KDPD-LAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFR 230 (521)
Q Consensus 180 ~----k~PD-I~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa 230 (521)
+ .-+| |.+.|-.|.- +| +...++.+.+++++.
T Consensus 145 ~~~~~~g~~~i~l~DT~G~~------------------~P-~~v~~lv~~l~~~~~ 181 (266)
T cd07944 145 ELVNEIKPDVFYIVDSFGSM------------------YP-EDIKRIISLLRSNLD 181 (266)
T ss_pred HHHHhCCCCEEEEecCCCCC------------------CH-HHHHHHHHHHHHhcC
Confidence 2 2233 6666766642 46 445566666666553
No 102
>PLN02389 biotin synthase
Probab=63.68 E-value=12 Score=40.15 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCCceEEEeeeeeeeecCCC-------cccccchHHHHHHHHHHCCCcEE
Q 009981 99 MAQSFKALAAAGVEGVVVEVWWGVVERDRP-------GVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 99 ~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p-------~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
-+++|+.||+||++.+.+ .+|.. | ..-+|+.+.+.++.+++.||++.
T Consensus 177 ~~E~l~~LkeAGld~~~~-----~LeTs-~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNH-----NLDTS-REYYPNVITTRSYDDRLETLEAVREAGISVC 230 (379)
T ss_pred CHHHHHHHHHcCCCEEEe-----eecCC-hHHhCCcCCCCCHHHHHHHHHHHHHcCCeEe
Confidence 357899999999999988 35631 2 12389999999999999999984
No 103
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=63.09 E-value=36 Score=35.34 Aligned_cols=84 Identities=11% Similarity=0.224 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHcCC--ceEEEeeeeeeeecCCCcccccc-----hHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCc
Q 009981 96 RKAMAQSFKALAAAGV--EGVVVEVWWGVVERDRPGVYDWR-----GYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKW 168 (521)
Q Consensus 96 ~~~~~~dL~~LK~aGV--dgV~vdVwWG~VE~~~p~~Ydws-----~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ 168 (521)
.+.+.+-++.+++.|| |+|.+|.=|-.-+...-+.|+|. --+++++.+++.|+||++++- |.
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~-----------P~ 96 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIK-----------PG 96 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeC-----------Cc
Confidence 6788888899998875 77877743432221112235554 378999999999999974443 22
Q ss_pred ccc--ChhhhhhhccCCCeeeeCCCCc
Q 009981 169 VPL--PQWVLEEIDKDPDLAYSDRFGR 193 (521)
Q Consensus 169 ipL--P~WV~~~~~k~PDI~~tD~~G~ 193 (521)
|.. |. .+++.+ -+.+.++.+|.
T Consensus 97 i~~~~~~--y~e~~~-~g~~v~~~~g~ 120 (317)
T cd06599 97 LLQDHPR--YKELKE-AGAFIKPPDGR 120 (317)
T ss_pred ccCCCHH--HHHHHH-CCcEEEcCCCC
Confidence 221 22 344444 37888887775
No 104
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=62.76 E-value=8.6 Score=39.48 Aligned_cols=75 Identities=21% Similarity=0.238 Sum_probs=46.8
Q ss_pred HHHHHHHHcCCceEEEeeeeeeeecCCCc---ccccchHHHHHHHHHHCCC-cEEEEEeeeccCCCCCCCCccccChhhh
Q 009981 101 QSFKALAAAGVEGVVVEVWWGVVERDRPG---VYDWRGYFDLIVLASNCGL-KVRALLAFHQCGSGPGDPKWVPLPQWVL 176 (521)
Q Consensus 101 ~dL~~LK~aGVdgV~vdVwWG~VE~~~p~---~Ydws~Y~~l~~mv~~~GL-Kv~~vlsfHqCGGNVGDt~~ipLP~WV~ 176 (521)
+-++++.++|+++|.+..-++ .--+|. +|-+-+++++++.+++.|. ++ -+|-|| ..+ ++=.++.
T Consensus 186 ~~~~~~~~~G~d~i~~~d~~~--~~isp~~f~e~~~P~~k~i~~~i~~~g~~~~----~lH~cG-----~~~-~~~~~l~ 253 (343)
T PF01208_consen 186 EYAKAQIEAGADGIFIFDSSG--SLISPEMFEEFILPYLKKIIDAIKEAGKDPV----ILHICG-----NTT-PILDDLA 253 (343)
T ss_dssp HHHHHHHHTT-SEEEEEETTG--GGS-HHHHHHHTHHHHHHHHHHHHHHETE-E----EEEETT-----HG--GGHHHHH
T ss_pred HHHHHHHHhCCCccccccccc--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCce----EEEECC-----chH-HHHHHHH
Confidence 345677799999998777333 222344 6778999999999999999 54 379998 222 2333444
Q ss_pred hhhccCCCeeeeCC
Q 009981 177 EEIDKDPDLAYSDR 190 (521)
Q Consensus 177 ~~~~k~PDI~~tD~ 190 (521)
+ ...|++-.|.
T Consensus 254 ~---~g~d~~~~~~ 264 (343)
T PF01208_consen 254 D---LGADVLSVDE 264 (343)
T ss_dssp T---SS-SEEEE-T
T ss_pred h---cCCCEEEEcC
Confidence 4 3356666653
No 105
>PLN02692 alpha-galactosidase
Probab=62.71 E-value=20 Score=39.31 Aligned_cols=64 Identities=22% Similarity=0.258 Sum_probs=45.9
Q ss_pred cCHHHHHHHHHHH-----HHcCCceEEEeeeeeeeecCCCccccc------chHHHHHHHHHHCCCcEEEEEeeeccCC
Q 009981 94 KRRKAMAQSFKAL-----AAAGVEGVVVEVWWGVVERDRPGVYDW------RGYFDLIVLASNCGLKVRALLAFHQCGS 161 (521)
Q Consensus 94 ~~~~~~~~dL~~L-----K~aGVdgV~vdVwWG~VE~~~p~~Ydw------s~Y~~l~~mv~~~GLKv~~vlsfHqCGG 161 (521)
.+++.+.+...+| |++|.+-|.||.-|...++...|..-. ++.+.|++.+++.|||. ..|.+-|
T Consensus 70 i~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~~GLKf----GIy~d~G 144 (412)
T PLN02692 70 IDEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHSKGLKL----GIYSDAG 144 (412)
T ss_pred cCHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHHCCCce----EEEecCC
Confidence 3667777766654 889999999999775444433333322 78999999999999996 4455544
No 106
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=62.19 E-value=1.1e+02 Score=31.96 Aligned_cols=86 Identities=10% Similarity=0.141 Sum_probs=57.9
Q ss_pred ecCHHHHHHHHHHHHHc--CCceEEEee-eeeeeecCCCcccccc-----hHHHHHHHHHHCCCcEEEEEeeeccCCCCC
Q 009981 93 VKRRKAMAQSFKALAAA--GVEGVVVEV-WWGVVERDRPGVYDWR-----GYFDLIVLASNCGLKVRALLAFHQCGSGPG 164 (521)
Q Consensus 93 v~~~~~~~~dL~~LK~a--GVdgV~vdV-wWG~VE~~~p~~Ydws-----~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVG 164 (521)
-.+.+.+.+-++.+++. -+|+|.+|. ||+ ..+-+.|+|. --+++++.+++.|+||++++-
T Consensus 20 y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~---~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~--------- 87 (319)
T cd06591 20 YKTQEELLDVAKEYRKRGIPLDVIVQDWFYWP---KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIW--------- 87 (319)
T ss_pred CCCHHHHHHHHHHHHHhCCCccEEEEechhhc---CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEec---------
Confidence 35778899999999987 678898885 343 2211255555 678999999999999985443
Q ss_pred CCCccc--cChhhhhhhccCCCeeeeCCCCccc
Q 009981 165 DPKWVP--LPQWVLEEIDKDPDLAYSDRFGRRN 195 (521)
Q Consensus 165 Dt~~ip--LP~WV~~~~~k~PDI~~tD~~G~r~ 195 (521)
|.|. -|. .+++.+ .+.+.++..|...
T Consensus 88 --P~v~~~~~~--y~e~~~-~g~~v~~~~g~~~ 115 (319)
T cd06591 88 --PTFGPETEN--YKEMDE-KGYLIKTDRGPRV 115 (319)
T ss_pred --CCcCCCChh--HHHHHH-CCEEEEcCCCCee
Confidence 2222 122 334443 4888888887653
No 107
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=61.79 E-value=1.3e+02 Score=32.00 Aligned_cols=114 Identities=15% Similarity=0.148 Sum_probs=74.2
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEeee--eeeeec----------CCCcccccchHHHHHHHHHHCCCcEEEE-Eeeec
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEVW--WGVVER----------DRPGVYDWRGYFDLIVLASNCGLKVRAL-LAFHQ 158 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdVw--WG~VE~----------~~p~~Ydws~Y~~l~~mv~~~GLKv~~v-lsfHq 158 (521)
.+.+++.+++=|+.+|+.|+|.|-||+= +|.|== .....+ -.-.+++++.++++||.+++= .+|-
T Consensus 8 ~a~~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~-i~D~~~l~~~l~e~gIY~IARIv~Fk- 85 (316)
T PF13200_consen 8 SAGSPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPY-IKDLKALVKKLKEHGIYPIARIVVFK- 85 (316)
T ss_pred hcCCHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhccccccc-ccCHHHHHHHHHHCCCEEEEEEEEec-
Confidence 4578889999999999999999999997 665421 111111 356889999999999999874 4441
Q ss_pred cCCCCCCCCccccChhhhhhhccCCCeeeeCCCCcc--cccccccccCcccccCCCCchHHHHHHHHHHHHHHhHh
Q 009981 159 CGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRR--NMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPL 232 (521)
Q Consensus 159 CGGNVGDt~~ipLP~WV~~~~~k~PDI~~tD~~G~r--~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~ 232 (521)
++ -+.+ ++||..+....|.. +.+-.+ ++.-=+ +.-++|.-.++++.++.
T Consensus 86 -------D~------~la~---~~pe~av~~~~G~~w~d~~~~~-------WvnP~~--~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 86 -------DP------VLAE---AHPEWAVKTKDGSVWRDNEGEA-------WVNPYS--KEVWDYNIDIAKEAAKL 136 (316)
T ss_pred -------Ch------HHhh---hChhhEEECCCCCcccCCCCCc-------cCCCCC--HHHHHHHHHHHHHHHHc
Confidence 22 2222 46776666666643 111111 222224 77788888887776653
No 108
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=61.14 E-value=48 Score=34.47 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=65.7
Q ss_pred CCCCcceEEeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 72 RRNGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 72 ~~~~vpv~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
....+|+-+|.=...| -...+++=++.+|++||+||-|.-- | .+.=+++.+.++++||+.+
T Consensus 91 ~~~~~Pivlm~Y~Npi-------~~~Gie~F~~~~~~~GvdGlivpDL--------P----~ee~~~~~~~~~~~gi~~I 151 (265)
T COG0159 91 KGVKVPIVLMTYYNPI-------FNYGIEKFLRRAKEAGVDGLLVPDL--------P----PEESDELLKAAEKHGIDPI 151 (265)
T ss_pred cCCCCCEEEEEeccHH-------HHhhHHHHHHHHHHcCCCEEEeCCC--------C----hHHHHHHHHHHHHcCCcEE
Confidence 4468898888766422 3466777889999999999998643 1 1223567888889999998
Q ss_pred EEEeeeccCCCCCCCCccccChhhhhhhcc-CCCeeeeCCCCcc
Q 009981 152 ALLAFHQCGSGPGDPKWVPLPQWVLEEIDK-DPDLAYSDRFGRR 194 (521)
Q Consensus 152 ~vlsfHqCGGNVGDt~~ipLP~WV~~~~~k-~PDI~~tD~~G~r 194 (521)
.+.+ ||.| +.++-++.+. ..-|++..+.|.+
T Consensus 152 ~lva-----------Ptt~-~~rl~~i~~~a~GFiY~vs~~GvT 183 (265)
T COG0159 152 FLVA-----------PTTP-DERLKKIAEAASGFIYYVSRMGVT 183 (265)
T ss_pred EEeC-----------CCCC-HHHHHHHHHhCCCcEEEEeccccc
Confidence 6655 5554 6677666543 3568888888765
No 109
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=60.75 E-value=37 Score=35.93 Aligned_cols=92 Identities=20% Similarity=0.230 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccChhhhhhh
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEI 179 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~WV~~~~ 179 (521)
.+||+...++||+.|+|..-.... .--.+.++.+++.|+++++.+.. ..-.-|.-+.+..
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~----------d~~~~~i~~ak~~G~~v~~~l~~----------s~~~~~e~l~~~a 149 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA----------DVSEQHIGMARELGMDTVGFLMM----------SHMTPPEKLAEQA 149 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH----------HHHHHHHHHHHHcCCeEEEEEEc----------ccCCCHHHHHHHH
Confidence 468999999999999988753322 24689999999999999866552 2233466665532
Q ss_pred cc----CCC-eeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHh
Q 009981 180 DK----DPD-LAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFR 230 (521)
Q Consensus 180 ~k----~PD-I~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa 230 (521)
++ -+| |.++|-.|.- +| +...++.+.+++++.
T Consensus 150 ~~~~~~Ga~~i~i~DT~G~~------------------~P-~~v~~~v~~l~~~l~ 186 (333)
T TIGR03217 150 KLMESYGADCVYIVDSAGAM------------------LP-DDVRDRVRALKAVLK 186 (333)
T ss_pred HHHHhcCCCEEEEccCCCCC------------------CH-HHHHHHHHHHHHhCC
Confidence 21 233 6667766642 36 556677777776664
No 110
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=60.01 E-value=24 Score=38.63 Aligned_cols=68 Identities=21% Similarity=0.188 Sum_probs=48.2
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCccc---cc-------------------chHHHHHHHHHHCCCcEE
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVY---DW-------------------RGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Y---dw-------------------s~Y~~l~~mv~~~GLKv~ 151 (521)
..++.+.+.|..||.+||++|-|.-.+--........| |+ .-+++|++.+++.||||+
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 34678899999999999999988764322211111222 22 248899999999999999
Q ss_pred EEEeeeccCC
Q 009981 152 ALLAFHQCGS 161 (521)
Q Consensus 152 ~vlsfHqCGG 161 (521)
+=+-|=-|++
T Consensus 99 ~D~V~NH~~~ 108 (479)
T PRK09441 99 ADVVLNHKAG 108 (479)
T ss_pred EEECcccccC
Confidence 8777766664
No 111
>PLN02433 uroporphyrinogen decarboxylase
Probab=59.90 E-value=19 Score=37.74 Aligned_cols=74 Identities=14% Similarity=0.005 Sum_probs=50.3
Q ss_pred HHHHHHHcCCceEEEeeeeeeeecCCCcccc---cchHHHHHHHHHHC--CCcEEEEEeeeccCCCCCCCCccccChhhh
Q 009981 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYD---WRGYFDLIVLASNC--GLKVRALLAFHQCGSGPGDPKWVPLPQWVL 176 (521)
Q Consensus 102 dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Yd---ws~Y~~l~~mv~~~--GLKv~~vlsfHqCGGNVGDt~~ipLP~WV~ 176 (521)
-+++..++|+++|.+..=|+-+ -+|.+|+ +-+.+++++.+++. +..+ ..|.||. + ++-.++.
T Consensus 184 ~~~~~ieaGa~~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~----ilh~cG~------~-~~~~~~~ 250 (345)
T PLN02433 184 YVDYQIDAGAQVVQIFDSWAGH--LSPVDFEEFSKPYLEKIVDEVKARHPDVPL----ILYANGS------G-GLLERLA 250 (345)
T ss_pred HHHHHHHcCCCEEEEecCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCE----EEEeCCC------H-HHHHHHH
Confidence 3445667999999876657753 4577887 99999999999987 4444 3488882 1 3444555
Q ss_pred hhhccCCCeeeeCCC
Q 009981 177 EEIDKDPDLAYSDRF 191 (521)
Q Consensus 177 ~~~~k~PDI~~tD~~ 191 (521)
+ ...|++-.|..
T Consensus 251 ~---~~~~~i~~d~~ 262 (345)
T PLN02433 251 G---TGVDVIGLDWT 262 (345)
T ss_pred h---cCCCEEEcCCC
Confidence 5 34467766654
No 112
>PRK09989 hypothetical protein; Provisional
Probab=59.87 E-value=22 Score=35.11 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 98 AMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 98 ~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
-+.+.|++++++|.++|++..-| .++ -+++.++++++||++.
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~---------~~~---~~~~~~~l~~~Gl~v~ 57 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPY---------DYS---TLQIQKQLEQNHLTLA 57 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCcc---------cCC---HHHHHHHHHHcCCcEE
Confidence 47889999999999999994212 233 4678889999999985
No 113
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=59.63 E-value=20 Score=35.09 Aligned_cols=42 Identities=31% Similarity=0.423 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 98 AMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 98 ~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
-+++.|+.++++|+++|++.. + ++. ..+++.++++++||++.
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~------~-----~~~-~~~~l~~~l~~~gl~v~ 56 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLF------P-----YDW-DAEALKARLAAAGLEQV 56 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecC------C-----ccC-CHHHHHHHHHHcCCeEE
Confidence 588999999999999998842 1 122 36888999999999985
No 114
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=58.73 E-value=22 Score=35.13 Aligned_cols=53 Identities=19% Similarity=0.298 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCceEEEeeeeeeeecC-CCcccccc--hHHHHHHHHHHCCCcEEEE
Q 009981 97 KAMAQSFKALAAAGVEGVVVEVWWGVVERD-RPGVYDWR--GYFDLIVLASNCGLKVRAL 153 (521)
Q Consensus 97 ~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~-~p~~Ydws--~Y~~l~~mv~~~GLKv~~v 153 (521)
-.+++.|+.++++|+++|.+.+- ++. .....+|+ ..+++.++++++||+|..+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~ 71 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD----ESDERLARLDWSKEERLSLVKAIYETGVRIPSM 71 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC----CcccccccccCCHHHHHHHHHHHHHcCCCceEE
Confidence 46889999999999999999532 221 01223554 4688999999999999643
No 115
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=57.14 E-value=94 Score=32.36 Aligned_cols=83 Identities=10% Similarity=0.142 Sum_probs=55.9
Q ss_pred ecCHHHHHHHHHHHHHcC--CceEEEeeeeeeeecCCCcccccc-----hHHHHHHHHHHCCCcEEEEEeeeccCCCCCC
Q 009981 93 VKRRKAMAQSFKALAAAG--VEGVVVEVWWGVVERDRPGVYDWR-----GYFDLIVLASNCGLKVRALLAFHQCGSGPGD 165 (521)
Q Consensus 93 v~~~~~~~~dL~~LK~aG--VdgV~vdVwWG~VE~~~p~~Ydws-----~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGD 165 (521)
..+.+.+.+-++.+++.+ +|+|.+|.=|. . +-+.|+|. -.+++++.+++.|+||++++-
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~--~--~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~---------- 85 (317)
T cd06600 20 YYPQDKVVEVVDIMQKEGFPYDVVFLDIHYM--D--SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVD---------- 85 (317)
T ss_pred CCCHHHHHHHHHHHHHcCCCcceEEEChhhh--C--CCCceeechhcCCCHHHHHHHHHHCCCEEEEEee----------
Confidence 467788899999999876 58888886552 1 23445553 478899999999999986554
Q ss_pred CCcccc----ChhhhhhhccCCCeeeeCCCCc
Q 009981 166 PKWVPL----PQWVLEEIDKDPDLAYSDRFGR 193 (521)
Q Consensus 166 t~~ipL----P~WV~~~~~k~PDI~~tD~~G~ 193 (521)
|.|.. |.+ +++ ..-+.+.++.+|.
T Consensus 86 -P~i~~~~~~~~~--~~~-~~~~~~v~~~~g~ 113 (317)
T cd06600 86 -PGIRVDQNYSPF--LSG-MDKGKFCEIESGE 113 (317)
T ss_pred -ccccCCCCChHH--HHH-HHCCEEEECCCCC
Confidence 33432 333 222 2347788887775
No 116
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=56.07 E-value=38 Score=34.05 Aligned_cols=92 Identities=22% Similarity=0.250 Sum_probs=61.1
Q ss_pred HHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccChhhhhhhc
Q 009981 101 QSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEID 180 (521)
Q Consensus 101 ~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~WV~~~~~ 180 (521)
++++..++.|++.|++-.-... ..-..++++.+++.|+++++.++- ...+ -|..+.+..+
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~----------~~~~~~~i~~ak~~G~~v~~~~~~---------~~~~-~~~~~~~~~~ 148 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTE----------ADVSEQHIGAARKLGMDVVGFLMM---------SHMA-SPEELAEQAK 148 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhh----------HHHHHHHHHHHHHCCCeEEEEEEe---------ccCC-CHHHHHHHHH
Confidence 7789999999999998664432 235788999999999999877651 1223 3677765332
Q ss_pred c----CCC-eeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHhH
Q 009981 181 K----DPD-LAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRP 231 (521)
Q Consensus 181 k----~PD-I~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~ 231 (521)
+ -+| |.+.|-.|. -+| +...++.+.+++++..
T Consensus 149 ~~~~~G~d~i~l~DT~G~------------------~~P-~~v~~lv~~l~~~~~~ 185 (263)
T cd07943 149 LMESYGADCVYVTDSAGA------------------MLP-DDVRERVRALREALDP 185 (263)
T ss_pred HHHHcCCCEEEEcCCCCC------------------cCH-HHHHHHHHHHHHhCCC
Confidence 2 233 555665553 246 5566777777776643
No 117
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=55.10 E-value=11 Score=38.64 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCCccc----ccchHHHHHHHHHHCCCcEEE
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGVY----DWRGYFDLIVLASNCGLKVRA 152 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Y----dws~Y~~l~~mv~~~GLKv~~ 152 (521)
+.+++.||+++||.|.+|.. |.=|-- -+.| .=.-|.+.+.+++++|++|+|
T Consensus 100 E~~~eklk~~~vdvvsLDfv-gDn~vI-k~vy~l~ksv~dyl~~l~~L~e~~irvvp 154 (275)
T COG1856 100 ESDLEKLKEELVDVVSLDFV-GDNDVI-KRVYKLPKSVEDYLRSLLLLKENGIRVVP 154 (275)
T ss_pred HHHHHHHHHhcCcEEEEeec-CChHHH-HHHHcCCccHHHHHHHHHHHHHcCceece
Confidence 67899999999999999987 111100 1122 234699999999999999975
No 118
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=54.90 E-value=51 Score=37.11 Aligned_cols=99 Identities=10% Similarity=0.047 Sum_probs=63.5
Q ss_pred ccchH---HHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccChhhhhhhccCCCeeeeCCCCcccccccccccCcc--
Q 009981 132 DWRGY---FDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDIL-- 206 (521)
Q Consensus 132 dws~Y---~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~WV~~~~~k~PDI~~tD~~G~r~~EclSlg~D~~-- 206 (521)
.|+-| .+|.++.+++|+++ -=||.+||.||- -..|+ ..+..+.+.+|..+...++|...-.+. .+++
T Consensus 216 ~w~l~~A~~~L~~~~~~~gv~i---~~fhGrGg~~~R-GGgpp-~~~~ail~q~~g~~r~TeQga~rY~~~---~e~~~~ 287 (494)
T PRK13655 216 VLSVKYALSRLYELEEELGVEI---YPILGVGSLPFR-GHLSP-ENLENVLEEYPGVYTFTVQSAFRYDYP---YEEVKK 287 (494)
T ss_pred HHHHHHHHHHHHHHHHHcCCcE---EEeccCCCCCCC-CCCCh-HHHHHHHhCCCCCeEEEeccccccCCC---HHHHHH
Confidence 35444 56788899999998 568999999984 33332 223333456888887777774311111 0111
Q ss_pred --------cccCCCCchHHHHHHHHHHHHHHhHhhhhhhh
Q 009981 207 --------PVLRGRSPIQAYTDFMRNFRDTFRPLLGAIIT 238 (521)
Q Consensus 207 --------pv~~GRTpi~~Y~dfm~sF~~~fa~~~g~vI~ 238 (521)
.......|.+.+++.|..+.+...+.|.++|.
T Consensus 288 av~~~~~~~~~~p~~~~~~~~~~m~~la~~s~~~Yr~~V~ 327 (494)
T PRK13655 288 AIEEINEKLIAPPRILSEEDKEELLEIIEKYSERYQSQIE 327 (494)
T ss_pred HHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011235578999999999999999988774
No 119
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=54.43 E-value=9.7 Score=39.82 Aligned_cols=55 Identities=20% Similarity=0.264 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCceEEE---eee-eeeeecCCCcccccchHHHHHHHHHHCCCcEEEEE
Q 009981 100 AQSFKALAAAGVEGVVV---EVW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALL 154 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~v---dVw-WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vl 154 (521)
++.|+.||+||++.+.. +.+ -.+...-.|++-.+....+.++.++++||++...|
T Consensus 141 ~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~ 199 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATI 199 (343)
T ss_pred HHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceE
Confidence 68899999999998751 222 12222334555666677899999999999986433
No 120
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=52.99 E-value=19 Score=42.68 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=24.6
Q ss_pred CeecCHHHHHHHHHHHHHcCCceEEEe
Q 009981 91 GKVKRRKAMAQSFKALAAAGVEGVVVE 117 (521)
Q Consensus 91 ~~v~~~~~~~~dL~~LK~aGVdgV~vd 117 (521)
+.+.+++++++||+.||++|+|.|++-
T Consensus 315 G~~~~~~~~~~dl~lmk~~n~N~vRts 341 (808)
T COG3250 315 GRVTDEDAMERDLKLMKEANMNSVRTS 341 (808)
T ss_pred ccccCHHHHHHHHHHHHHcCCCEEEec
Confidence 566899999999999999999999985
No 121
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=52.64 E-value=95 Score=31.03 Aligned_cols=90 Identities=13% Similarity=0.120 Sum_probs=53.9
Q ss_pred CCcceEEeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEE
Q 009981 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRAL 153 (521)
Q Consensus 74 ~~vpv~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~v 153 (521)
..+|+.+|.=+..+ +.+++ +-++.++++|+++|.+... -+|. .....++++.++++||++.+.
T Consensus 73 ~~~Pl~lM~y~n~~-----~~~~~---~~i~~~~~~Gadgvii~dl--p~e~-------~~~~~~~~~~~~~~Gl~~~~~ 135 (244)
T PRK13125 73 VSVPIILMTYLEDY-----VDSLD---NFLNMARDVGADGVLFPDL--LIDY-------PDDLEKYVEIIKNKGLKPVFF 135 (244)
T ss_pred CCCCEEEEEecchh-----hhCHH---HHHHHHHHcCCCEEEECCC--CCCc-------HHHHHHHHHHHHHcCCCEEEE
Confidence 46787767544211 23444 4477889999999999521 0120 234678999999999999855
Q ss_pred EeeeccCCCCCCCCccccChhhhhhhccCCCeeeeCCCC
Q 009981 154 LAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFG 192 (521)
Q Consensus 154 lsfHqCGGNVGDt~~ipLP~WV~~~~~k~PDI~~tD~~G 192 (521)
+. |+-| +.=+....+.-+.++|...+|
T Consensus 136 v~-----------p~T~-~e~l~~~~~~~~~~l~msv~~ 162 (244)
T PRK13125 136 TS-----------PKFP-DLLIHRLSKLSPLFIYYGLRP 162 (244)
T ss_pred EC-----------CCCC-HHHHHHHHHhCCCEEEEEeCC
Confidence 55 3322 233333333456777664333
No 122
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=51.10 E-value=9.9 Score=37.50 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEE
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRAL 153 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~v 153 (521)
..+.+...++|.+.|.+-++|+.+.+. ...+...-..++++.+++.|||++.-
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~-~~~~~~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSG-NEDEVIEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTT-HHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccc-cHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 678888999999999999999998876 67788888889999999999999844
No 123
>PRK07094 biotin synthase; Provisional
Probab=51.10 E-value=17 Score=37.34 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCceEEEeee---eeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 100 AQSFKALAAAGVEGVVVEVW---WGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVw---WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
++.++.||++|++.|.+++= -.+.+.-.+ ...++.+.+.++.++++|+++.
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~-~~s~~~~~~~i~~l~~~Gi~v~ 182 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHP-GMSFENRIACLKDLKELGYEVG 182 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCeec
Confidence 57889999999999987541 222233323 5788999999999999999875
No 124
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=50.31 E-value=34 Score=41.41 Aligned_cols=66 Identities=15% Similarity=0.096 Sum_probs=44.1
Q ss_pred CCCcceEEeeecc--eecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcE
Q 009981 73 RNGSPVFVKLPED--STMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKV 150 (521)
Q Consensus 73 ~~~vpv~VMlPLd--~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv 150 (521)
.++.||++--=.. .-...|...+++.+++||+.||++|+|.|++- ...+ . .+..++|-+.||-|
T Consensus 329 lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~s---HyP~-~----------~~fydlcDe~GllV 394 (1021)
T PRK10340 329 INNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTA---HYPN-D----------PRFYELCDIYGLFV 394 (1021)
T ss_pred ECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEec---CCCC-C----------HHHHHHHHHCCCEE
Confidence 4466666543211 00112334578999999999999999999983 2222 1 26789999999988
Q ss_pred EE
Q 009981 151 RA 152 (521)
Q Consensus 151 ~~ 152 (521)
+.
T Consensus 395 ~d 396 (1021)
T PRK10340 395 MA 396 (1021)
T ss_pred EE
Confidence 63
No 125
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=50.15 E-value=1.5e+02 Score=31.19 Aligned_cols=91 Identities=12% Similarity=0.088 Sum_probs=56.1
Q ss_pred ecCHHHHHHHHHHHHHcC--CceEEEeeeeeeeecCCCcccc-----cchH--HHHHHHHHHCCCcEEEEEeeeccCCCC
Q 009981 93 VKRRKAMAQSFKALAAAG--VEGVVVEVWWGVVERDRPGVYD-----WRGY--FDLIVLASNCGLKVRALLAFHQCGSGP 163 (521)
Q Consensus 93 v~~~~~~~~dL~~LK~aG--VdgV~vdVwWG~VE~~~p~~Yd-----ws~Y--~~l~~mv~~~GLKv~~vlsfHqCGGNV 163 (521)
..+.+.+.+-++.+++.| +|+|.+|.-|.. +-+.|+ |.-- +++++.+++.|+||++++-=|-+-.+
T Consensus 20 y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~- 94 (339)
T cd06602 20 YKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD----RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANE- 94 (339)
T ss_pred CCCHHHHHHHHHHHHHhCCCcceEEECccccc----CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCc-
Confidence 457788999999998866 588888866531 133444 3445 99999999999999855431111100
Q ss_pred CCCCccccChhhhhhhccCCCeeeeCCCCcc
Q 009981 164 GDPKWVPLPQWVLEEIDKDPDLAYSDRFGRR 194 (521)
Q Consensus 164 GDt~~ipLP~WV~~~~~k~PDI~~tD~~G~r 194 (521)
..-.-|. .+++.+ -+.+.++.+|..
T Consensus 95 ---~~~~~~~--~~e~~~-~g~~v~~~~g~~ 119 (339)
T cd06602 95 ---PTGSYPP--YDRGLE-MDVFIKNDDGSP 119 (339)
T ss_pred ---CCCCCHH--HHHHHH-CCeEEECCCCCE
Confidence 0001122 233333 377888888864
No 126
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=49.33 E-value=12 Score=38.87 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCceEEE---eee-eeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 100 AQSFKALAAAGVEGVVV---EVW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~v---dVw-WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
++.|+.||+||++.+.- .+. .-+.+.-.|.+..+..|.+.++.++++||++.
T Consensus 143 ~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~ 198 (340)
T TIGR03699 143 REVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTT 198 (340)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcc
Confidence 78999999999986641 111 12222223566789999999999999999975
No 127
>PRK04302 triosephosphate isomerase; Provisional
Probab=49.31 E-value=37 Score=33.36 Aligned_cols=46 Identities=15% Similarity=0.136 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEee
Q 009981 101 QSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAF 156 (521)
Q Consensus 101 ~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsf 156 (521)
..++.+|++|+++|-++. ++..-.+..-.++++.+++.||.++ ++.
T Consensus 76 ~~~~~l~~~G~~~vii~~--------ser~~~~~e~~~~v~~a~~~Gl~~I--~~v 121 (223)
T PRK04302 76 ILPEAVKDAGAVGTLINH--------SERRLTLADIEAVVERAKKLGLESV--VCV 121 (223)
T ss_pred hHHHHHHHcCCCEEEEec--------cccccCHHHHHHHHHHHHHCCCeEE--EEc
Confidence 448999999999998874 3445556668899999999999986 553
No 128
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=49.23 E-value=16 Score=38.42 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCceEE---Eeee-eeeeecCCCcccccchHHHHHHHHHHCCCcEEEE
Q 009981 99 MAQSFKALAAAGVEGVV---VEVW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRAL 153 (521)
Q Consensus 99 ~~~dL~~LK~aGVdgV~---vdVw-WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~v 153 (521)
.++.|++||+||++.+- +... --+...-.+++..++-+.+.++.++++||++..-
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg 207 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNAT 207 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceE
Confidence 45679999999998764 2222 2233333366777888899999999999998533
No 129
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=49.09 E-value=91 Score=30.53 Aligned_cols=67 Identities=18% Similarity=0.151 Sum_probs=47.9
Q ss_pred CcceEEeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeee-c---CCCcccccchHHHHHHHHHHCCCcE
Q 009981 75 GSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVE-R---DRPGVYDWRGYFDLIVLASNCGLKV 150 (521)
Q Consensus 75 ~vpv~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE-~---~~p~~Ydws~Y~~l~~mv~~~GLKv 150 (521)
++++.+|.+.. +++++.++++|++.|.+-.--...- . .....-+++...+.++.+++.|+++
T Consensus 66 ~~~~~~l~~~~--------------~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v 131 (265)
T cd03174 66 NVKLQALVRNR--------------EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEV 131 (265)
T ss_pred CcEEEEEccCc--------------hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 56777777542 7899999999999999887522100 0 0122236778889999999999999
Q ss_pred EEEEe
Q 009981 151 RALLA 155 (521)
Q Consensus 151 ~~vls 155 (521)
.+.+.
T Consensus 132 ~~~~~ 136 (265)
T cd03174 132 EGSLE 136 (265)
T ss_pred EEEEE
Confidence 97774
No 130
>PRK12677 xylose isomerase; Provisional
Probab=48.87 E-value=35 Score=36.77 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHcCCceEEEee---e-eeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 97 KAMAQSFKALAAAGVEGVVVEV---W-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 97 ~~~~~dL~~LK~aGVdgV~vdV---w-WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
-.+++-++.++++|+++|++.. + |+.-+.+ .+ ...+++-+++++.||+|.
T Consensus 31 ~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~----~~-~~~~~lk~~l~~~GL~v~ 84 (384)
T PRK12677 31 LDPVEAVHKLAELGAYGVTFHDDDLVPFGATDAE----RD-RIIKRFKKALDETGLVVP 84 (384)
T ss_pred CCHHHHHHHHHHhCCCEEEecccccCCCCCChhh----hH-HHHHHHHHHHHHcCCeeE
Confidence 3478889999999999998831 2 3222111 01 147889999999999986
No 131
>PLN02962 hydroxyacylglutathione hydrolase
Probab=48.78 E-value=19 Score=36.48 Aligned_cols=28 Identities=18% Similarity=0.081 Sum_probs=15.8
Q ss_pred HHHHHHHHHCCCcEEEEEeeeccCCCCC
Q 009981 137 FDLIVLASNCGLKVRALLAFHQCGSGPG 164 (521)
Q Consensus 137 ~~l~~mv~~~GLKv~~vlsfHqCGGNVG 164 (521)
+++++.+++.|+++..|+.||.-.--||
T Consensus 49 ~~~l~~l~~~g~~i~~Il~TH~H~DHig 76 (251)
T PLN02962 49 DRDLSLVKELGLKLIYAMNTHVHADHVT 76 (251)
T ss_pred HHHHHHHHHCCCeeEEEEcCCCCchhHH
Confidence 3445566666666666666665544333
No 132
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=48.70 E-value=16 Score=35.59 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=37.0
Q ss_pred ceEE-eeecceecC----------CCeecC-HHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHH
Q 009981 77 PVFV-KLPEDSTMI----------GGKVKR-RKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLAS 144 (521)
Q Consensus 77 pv~V-MlPLd~v~~----------~~~v~~-~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~ 144 (521)
|+-| .||+..|+. +++..+ .+.+++||..||..||..|-+ ++|...=..|... .+.+.++
T Consensus 26 P~~i~~l~~s~~~~~~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvt-----l~~~~EL~~l~Vp---~L~~~~~ 97 (168)
T PF05706_consen 26 PIQIDWLPLSPVNCSGFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVT-----LLTDHELARLGVP---DLGEAAQ 97 (168)
T ss_dssp ----EEEE-GGGT-SSEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE------S-HHHHHHTT-T---THHHHHH
T ss_pred ceeeeeecccccCCcceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEE-----eCcHHHHHHcCCc---cHHHHHH
Confidence 4444 466666643 233343 478999999999999999865 5665423334443 5779999
Q ss_pred HCCCcEE
Q 009981 145 NCGLKVR 151 (521)
Q Consensus 145 ~~GLKv~ 151 (521)
++||++.
T Consensus 98 ~~Gi~~~ 104 (168)
T PF05706_consen 98 ARGIAWH 104 (168)
T ss_dssp HTT-EEE
T ss_pred HcCCEEE
Confidence 9999883
No 133
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=48.48 E-value=13 Score=38.22 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCCcccc--cchHHHH-HHHHHHCCCcEEEEEeee
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGVYD--WRGYFDL-IVLASNCGLKVRALLAFH 157 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Yd--ws~Y~~l-~~mv~~~GLKv~~vlsfH 157 (521)
..||.+|+..||..|-.--+|= ++...++.|- |+-+..+ ...+.++|||+.+-++.|
T Consensus 14 ~eDlekMa~sGI~~Vit~AhdP-~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvH 73 (254)
T COG1099 14 FEDLEKMALSGIREVITLAHDP-YPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVH 73 (254)
T ss_pred HHHHHHHHHhChhhhhhcccCC-CCcccHHHHHHHHHHHHccchhhHHhhCceeeEEeccC
Confidence 4799999999999998888887 6766666652 3333333 456889999999999988
No 134
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=47.77 E-value=1.6e+02 Score=30.94 Aligned_cols=83 Identities=12% Similarity=0.145 Sum_probs=59.0
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEee----eeee--------eecCC-CcccccchHHHHHHHHHHCCCcEEEEEeeec
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEV----WWGV--------VERDR-PGVYDWRGYFDLIVLASNCGLKVRALLAFHQ 158 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdV----wWG~--------VE~~~-p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHq 158 (521)
..-+.+.+++-|..|...++|...+-. =|-+ .|..+ .+.|.=+-+++|++.+++.|+.|+
T Consensus 13 ~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vI------- 85 (311)
T cd06570 13 HFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVV------- 85 (311)
T ss_pred CCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEE-------
Confidence 456789999999999999998766532 2432 12211 346888899999999999999998
Q ss_pred cCCCCCCCCccccChhhhhhhccCCCeeeeC
Q 009981 159 CGSGPGDPKWVPLPQWVLEEIDKDPDLAYSD 189 (521)
Q Consensus 159 CGGNVGDt~~ipLP~WV~~~~~k~PDI~~tD 189 (521)
|.|-.|.=.......+|++.-..
T Consensus 86 --------PEId~PGH~~a~~~~ypel~~~~ 108 (311)
T cd06570 86 --------PEIDVPGHASAIAVAYPELASGP 108 (311)
T ss_pred --------EeecCccchHHHHHhCHHhccCC
Confidence 44556764444444688876654
No 135
>PRK08445 hypothetical protein; Provisional
Probab=47.73 E-value=19 Score=38.10 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCceE---EEeee-eeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEe
Q 009981 100 AQSFKALAAAGVEGV---VVEVW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLA 155 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV---~vdVw-WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vls 155 (521)
++.|+.||+||++.+ .+... -...+.-.|+.-.-..|.+.++.++++||++..-|=
T Consensus 144 ~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i 203 (348)
T PRK08445 144 KEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMM 203 (348)
T ss_pred HHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEE
Confidence 789999999999954 34433 223333335556666678999999999999964433
No 136
>PRK07360 FO synthase subunit 2; Reviewed
Probab=47.65 E-value=16 Score=38.84 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCceEE--Eeee--eeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 99 MAQSFKALAAAGVEGVV--VEVW--WGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 99 ~~~dL~~LK~aGVdgV~--vdVw--WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
.++.|+.||+||++.+. -... -.+-+.-.|++-.+..+.+.++.+++.||++.
T Consensus 162 ~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~ 218 (371)
T PRK07360 162 YEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTT 218 (371)
T ss_pred HHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCce
Confidence 36789999999999994 0000 00000113777778788999999999999985
No 137
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=47.47 E-value=17 Score=37.38 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCceEE-Ee--ee-eeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 99 MAQSFKALAAAGVEGVV-VE--VW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 99 ~~~dL~~LK~aGVdgV~-vd--Vw-WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
.++.|++||+||++.+. +. .. -.+...-.|++..+..+.+.++.+++.||++.
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~ 162 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTT 162 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCce
Confidence 36889999999999774 21 11 11122223677788999999999999999985
No 138
>PLN03231 putative alpha-galactosidase; Provisional
Probab=47.35 E-value=34 Score=36.88 Aligned_cols=63 Identities=22% Similarity=0.387 Sum_probs=41.5
Q ss_pred CHHHHHHHH----HHHHHcCCceEEEeeeeeeeec----------------CCCccc-----ccc------hHHHHHHHH
Q 009981 95 RRKAMAQSF----KALAAAGVEGVVVEVWWGVVER----------------DRPGVY-----DWR------GYFDLIVLA 143 (521)
Q Consensus 95 ~~~~~~~dL----~~LK~aGVdgV~vdVwWG~VE~----------------~~p~~Y-----dws------~Y~~l~~mv 143 (521)
+++.+.+.. +-||.+|-+-|.||.-|-.-++ .+-|+. .|- +.+.|++.|
T Consensus 16 ~E~~i~~~Ad~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~lADyv 95 (357)
T PLN03231 16 SEEQFLENAKIVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPIAAKV 95 (357)
T ss_pred CHHHHHHHHHHHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHHHHHH
Confidence 344444443 3678999999999998854321 111222 222 899999999
Q ss_pred HHCCCcEEEEEeeeccCC
Q 009981 144 SNCGLKVRALLAFHQCGS 161 (521)
Q Consensus 144 ~~~GLKv~~vlsfHqCGG 161 (521)
++.|||+ ..|.+-|
T Consensus 96 Hs~GLKf----GIY~~~G 109 (357)
T PLN03231 96 HALGLKL----GIHVMRG 109 (357)
T ss_pred HhCCcce----EEEecCC
Confidence 9999995 5555444
No 139
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=46.91 E-value=39 Score=33.40 Aligned_cols=42 Identities=17% Similarity=0.082 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 98 AMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 98 ~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
-+++-|+.++++|.++|++. + +. . ...+++-++++++||++.
T Consensus 16 ~l~~~l~~~a~~Gf~~VEl~---~---~~---~---~~~~~~~~~l~~~gl~~~ 57 (258)
T PRK09997 16 DFLARFEKAAQCGFRGVEFM---F---PY---D---YDIEELKQVLASNKLEHT 57 (258)
T ss_pred CHHHHHHHHHHhCCCEEEEc---C---CC---C---CCHHHHHHHHHHcCCcEE
Confidence 48888999999999999992 2 11 1 247899999999999984
No 140
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=46.86 E-value=26 Score=37.76 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=37.1
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEe---ee-eeeeecCCCcccccchHHHHHHHHHHCCCcEEE
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVE---VW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRA 152 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vd---Vw-WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~ 152 (521)
.++-.+...+++++++|+++|++. +| |+.-+.+ . + .-.+++-++++++||+|..
T Consensus 29 ~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e--~--~-~~~~~lk~~L~~~GL~v~~ 86 (382)
T TIGR02631 29 RTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQE--R--D-QIVRRFKKALDETGLKVPM 86 (382)
T ss_pred CCCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhH--H--H-HHHHHHHHHHHHhCCeEEE
Confidence 344466788999999999999864 23 3332211 0 1 2267899999999999863
No 141
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=46.84 E-value=20 Score=25.57 Aligned_cols=18 Identities=28% Similarity=0.678 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCCceEEEe
Q 009981 100 AQSFKALAAAGVEGVVVE 117 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vd 117 (521)
.+..+.|=.+||||||.|
T Consensus 10 ~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHHcCCCEeeCC
Confidence 445688889999999987
No 142
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=46.71 E-value=34 Score=34.91 Aligned_cols=45 Identities=22% Similarity=0.149 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHH----HHHCCCcEEEEEe
Q 009981 101 QSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVL----ASNCGLKVRALLA 155 (521)
Q Consensus 101 ~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~m----v~~~GLKv~~vls 155 (521)
-...+||++|++.|.|+- +|++=.|..=++++.. +.++||+.+ +|
T Consensus 77 vS~~mLkd~G~~~viiGH--------SERR~~f~Etd~~v~~K~~~a~~~gl~pI--vC 125 (250)
T PRK00042 77 ISAEMLKDLGVKYVIIGH--------SERRQYFGETDELVNKKVKAALKAGLTPI--LC 125 (250)
T ss_pred cCHHHHHHCCCCEEEeCc--------ccccCccCcCHHHHHHHHHHHHHCCCEEE--EE
Confidence 356789999999999985 4777778888999988 999999985 77
No 143
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=46.55 E-value=1.7e+02 Score=30.74 Aligned_cols=84 Identities=8% Similarity=0.103 Sum_probs=55.6
Q ss_pred ecCHHHHHHHHHHHHHcC--CceEEEeeeeeeeecCCCcccccc-----hHHHHHHHHHHCCCcEEEEEeeeccCCCCCC
Q 009981 93 VKRRKAMAQSFKALAAAG--VEGVVVEVWWGVVERDRPGVYDWR-----GYFDLIVLASNCGLKVRALLAFHQCGSGPGD 165 (521)
Q Consensus 93 v~~~~~~~~dL~~LK~aG--VdgV~vdVwWG~VE~~~p~~Ydws-----~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGD 165 (521)
-.+.+.+.+-++.+++.| +++|.+|.-|- .+.+.|+|. --+++++.+++.|+||++++-
T Consensus 20 y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~----~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~---------- 85 (339)
T cd06603 20 YKDQEDVKEVDAGFDEHDIPYDVIWLDIEHT----DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVD---------- 85 (339)
T ss_pred CCCHHHHHHHHHHHHHcCCCceEEEEChHHh----CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEec----------
Confidence 457788888899998876 47888887542 124455554 356799999999999975543
Q ss_pred CCccc----cChhhhhhhccCCCeeeeCCCCcc
Q 009981 166 PKWVP----LPQWVLEEIDKDPDLAYSDRFGRR 194 (521)
Q Consensus 166 t~~ip----LP~WV~~~~~k~PDI~~tD~~G~r 194 (521)
|.|. .|. -+++.+ -+.+.++.+|..
T Consensus 86 -P~v~~~~~~~~--y~e~~~-~g~~vk~~~g~~ 114 (339)
T cd06603 86 -PHIKRDDGYYV--YKEAKD-KGYLVKNSDGGD 114 (339)
T ss_pred -CceecCCCCHH--HHHHHH-CCeEEECCCCCE
Confidence 2222 222 233333 388999988854
No 144
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=46.09 E-value=62 Score=34.76 Aligned_cols=70 Identities=21% Similarity=0.131 Sum_probs=51.9
Q ss_pred CcceEEeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 75 GSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 75 ~vpv~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
+-|+++-.| |.+.+++.+..--+.+|++||..+.-..|==..-|.+-+-..+++|..+.+.+++.||.+.
T Consensus 117 ~~~~~iaGp-------c~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~ 186 (360)
T PRK12595 117 GNQSFIFGP-------CSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVI 186 (360)
T ss_pred CCeeeEEec-------ccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEE
Confidence 345566666 5678899999999999999999999766631222222233456889999999999999984
No 145
>PRK06256 biotin synthase; Validated
Probab=45.23 E-value=22 Score=36.76 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCCc-------ccccchHHHHHHHHHHCCCcEE
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPG-------VYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~-------~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
++.++.||++|++.|.++ +|. ++. ..+|..+.+.++.++++||++.
T Consensus 152 ~e~l~~LkeaG~~~v~~~-----lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~ 204 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHN-----LET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPC 204 (336)
T ss_pred HHHHHHHHHhCCCEEecC-----Ccc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeec
Confidence 467789999999999875 343 222 2467888899999999999875
No 146
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=45.06 E-value=86 Score=31.90 Aligned_cols=89 Identities=20% Similarity=0.180 Sum_probs=57.5
Q ss_pred CCcceEEeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEE
Q 009981 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRAL 153 (521)
Q Consensus 74 ~~vpv~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~v 153 (521)
..+|+..|+=.+.| -.-.+++-++.++++||+||-+..- | .+.-.++++.++++||+.+.+
T Consensus 86 ~~~plv~m~Y~Npi-------~~~G~e~f~~~~~~aGvdgviipDl-----p-------~ee~~~~~~~~~~~gl~~i~l 146 (256)
T TIGR00262 86 PNIPIGLLTYYNLI-------FRKGVEEFYAKCKEVGVDGVLVADL-----P-------LEESGDLVEAAKKHGVKPIFL 146 (256)
T ss_pred CCCCEEEEEeccHH-------hhhhHHHHHHHHHHcCCCEEEECCC-----C-------hHHHHHHHHHHHHCCCcEEEE
Confidence 45676666655321 1246677899999999999999842 2 245678999999999999866
Q ss_pred EeeeccCCCCCCCCccccChhhhhhhccCCC-eeeeCCCCc
Q 009981 154 LAFHQCGSGPGDPKWVPLPQWVLEEIDKDPD-LAYSDRFGR 193 (521)
Q Consensus 154 lsfHqCGGNVGDt~~ipLP~WV~~~~~k~PD-I~~tD~~G~ 193 (521)
++ |+-| +.-+..+.+.-++ |++....|.
T Consensus 147 v~-----------P~T~-~eri~~i~~~~~gfiy~vs~~G~ 175 (256)
T TIGR00262 147 VA-----------PNAD-DERLKQIAEKSQGFVYLVSRAGV 175 (256)
T ss_pred EC-----------CCCC-HHHHHHHHHhCCCCEEEEECCCC
Confidence 66 4443 3455444443332 554454444
No 147
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=45.01 E-value=62 Score=32.89 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=47.6
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecC---CCcccccchHHHHHHHHHHCCCcEEEEEeeeccC
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERD---RPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCG 160 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~---~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCG 160 (521)
.+.+++.+.+.++.+++.|++.|-+=.=++..-+. +...++-+.+.++++.+++.|+++. .|.++
T Consensus 115 ~~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~----~H~~~ 182 (342)
T cd01299 115 VVDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVA----AHAYG 182 (342)
T ss_pred eecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEE----EEeCC
Confidence 46778999999999999999999765433221111 1125777889999999999999864 57543
No 148
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=44.85 E-value=63 Score=33.26 Aligned_cols=61 Identities=15% Similarity=0.006 Sum_probs=45.1
Q ss_pred CeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 91 GKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 91 ~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
|.+.+++++.+--+.||++|+..++...|==.--|.+-.-+--++|+.+.+.+++.||.+.
T Consensus 35 Csie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~ 95 (266)
T PRK13398 35 CAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVV 95 (266)
T ss_pred CcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEE
Confidence 5778999999999999999999998887720000100011125689999999999999984
No 149
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=44.62 E-value=66 Score=38.69 Aligned_cols=65 Identities=12% Similarity=0.041 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCccc-------------ccchHHHHHHHHHHCCCcEEEEEeeeccC
Q 009981 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVY-------------DWRGYFDLIVLASNCGLKVRALLAFHQCG 160 (521)
Q Consensus 95 ~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Y-------------dws~Y~~l~~mv~~~GLKv~~vlsfHqCG 160 (521)
+-+.+.+.|..||++||+.|-+.-.+-.... +..-| ..+.++++++.++++||+|+.=+-+--++
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~~a~~g-s~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPILAARPG-STHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCccCCCC-CCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 3477999999999999999977654322110 11122 34789999999999999998666654444
No 150
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=44.00 E-value=48 Score=33.96 Aligned_cols=47 Identities=17% Similarity=0.141 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 97 KAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 97 ~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
..+++-|+..|++|++.|+|.. |--...-+-..+++++++++|||+.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS~--------G~~~i~~~~~~rlI~~~~~~g~~v~ 117 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEISD--------GSMEISLEERCNLIERAKDNGFMVL 117 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEcC--------CccCCCHHHHHHHHHHHHhCCCeEe
Confidence 6777777788888888777731 2222333455667888888888874
No 151
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=43.90 E-value=1.7e+02 Score=36.49 Aligned_cols=62 Identities=21% Similarity=0.276 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCceEEEe-ee----------------eeeeec---CCCccc---ccchHHHHHHHHHHCCCcEEEEEee-
Q 009981 101 QSFKALAAAGVEGVVVE-VW----------------WGVVER---DRPGVY---DWRGYFDLIVLASNCGLKVRALLAF- 156 (521)
Q Consensus 101 ~dL~~LK~aGVdgV~vd-Vw----------------WG~VE~---~~p~~Y---dws~Y~~l~~mv~~~GLKv~~vlsf- 156 (521)
+.|..||++||+.|.+- |+ ||.-=. .-+..| .-..++++++.++++||+|+.=+-|
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~N 270 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFN 270 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEccc
Confidence 44669999999999873 33 221000 001112 3456999999999999999865555
Q ss_pred eccCCC
Q 009981 157 HQCGSG 162 (521)
Q Consensus 157 HqCGGN 162 (521)
|-+.+|
T Consensus 271 Ht~~~~ 276 (1221)
T PRK14510 271 HTGESN 276 (1221)
T ss_pred cccCCC
Confidence 655544
No 152
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=43.87 E-value=51 Score=34.05 Aligned_cols=72 Identities=13% Similarity=0.263 Sum_probs=47.4
Q ss_pred HHHHHHHHHHH---cCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCC------CCCc
Q 009981 98 AMAQSFKALAA---AGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPG------DPKW 168 (521)
Q Consensus 98 ~~~~dL~~LK~---aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVG------Dt~~ 168 (521)
.++.|++.||+ +|++.+..-. -||-+.|.+.++.++++|+.+-+|.+.=-+. |.. .-|.
T Consensus 146 ~~~~d~~~L~~Ki~aGA~f~iTQ~-----------~Fd~~~~~~f~~~~~~~gi~~PIi~GI~pi~-s~~~~~~~~~~~G 213 (281)
T TIGR00677 146 SVELDLKYLKEKVDAGADFIITQL-----------FYDVDNFLKFVNDCRAIGIDCPIVPGIMPIN-NYASFLRRAKWSK 213 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEeeccc-----------eecHHHHHHHHHHHHHcCCCCCEEeeccccC-CHHHHHHHHhcCC
Confidence 35567777764 9999776533 4888999999999999988764332221110 000 1245
Q ss_pred cccChhhhhhhcc
Q 009981 169 VPLPQWVLEEIDK 181 (521)
Q Consensus 169 ipLP~WV~~~~~k 181 (521)
+.+|.||.+..++
T Consensus 214 i~vP~~l~~~l~~ 226 (281)
T TIGR00677 214 TKIPQEIMSRLEP 226 (281)
T ss_pred CCCCHHHHHHHHh
Confidence 8899999996553
No 153
>PRK04326 methionine synthase; Provisional
Probab=43.86 E-value=42 Score=34.67 Aligned_cols=78 Identities=15% Similarity=0.131 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCceEEEeee-eeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccChhh
Q 009981 97 KAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWV 175 (521)
Q Consensus 97 ~~~~~dL~~LK~aGVdgV~vdVw-WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~WV 175 (521)
+.+.+.++.|+++|++.|.+|+= |... +. +++.+.+.++.+-+ +++.. ...|-|.||.. |.|=
T Consensus 161 ~~~~~~i~~l~~~G~~~iqidEP~l~~~----~~--~~~~~~~~l~~~~~-~~~~~--v~lH~C~G~~~-------~~~~ 224 (330)
T PRK04326 161 KVINEEIKNLVEAGAKYIQIDEPALATH----PE--DVEIAVEALNRIVK-GINAK--LGLHVCYGDYS-------RIAP 224 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEecCchhhcC----HH--HHHHHHHHHHHHHh-CCCCE--EEEEEeCCCcH-------HHHH
Confidence 46677888999999999999985 6651 22 33555555555544 44543 35699988752 2221
Q ss_pred hhhhccCCCeeeeCCC
Q 009981 176 LEEIDKDPDLAYSDRF 191 (521)
Q Consensus 176 ~~~~~k~PDI~~tD~~ 191 (521)
...+..-|.+..|-.
T Consensus 225 -~l~~~~vd~i~~d~~ 239 (330)
T PRK04326 225 -YILEFPVDQFDLEFA 239 (330)
T ss_pred -HHHhCCCCEEEEEeC
Confidence 112355677777764
No 154
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=43.67 E-value=36 Score=35.12 Aligned_cols=86 Identities=17% Similarity=0.113 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcc------cccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccc
Q 009981 97 KAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGV------YDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVP 170 (521)
Q Consensus 97 ~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~------Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ip 170 (521)
+++.++++.|..+|+..|-||+= .+.+.-.... .+|.-..+.++.+- .+..+. +++|-|+||..+..
T Consensus 154 ~a~~~ei~~l~~~G~~~iQiDeP-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~--v~~H~C~~~~~~~~--- 226 (324)
T PF01717_consen 154 EAYREEIRALYDAGCRYIQIDEP-ALSEGPPDASFDRDEYLDEAVAAEALNRAV-KGEDAT--VGVHVCRGNYPSIL--- 226 (324)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEET-CHHCTSCSSHHHHHHHHHHHHHHHHHHHTT-STTTSE--EEEEESSSCHCTTH---
T ss_pred HHHHHHHHHHHHCCCCEEEecch-HhhcchhhhcccHHHHHHHHHHHHHHHhcc-CCCCCE--EEEEecCccchhhH---
Confidence 46788889999999999999987 2222211111 12332233333221 245554 78999999853221
Q ss_pred cChhhhhhhccCCCeeeeCCCCcc
Q 009981 171 LPQWVLEEIDKDPDLAYSDRFGRR 194 (521)
Q Consensus 171 LP~WV~~~~~k~PDI~~tD~~G~r 194 (521)
....+-+-|.++.+-...+
T Consensus 227 -----~~l~~~~vd~~~lE~~~~~ 245 (324)
T PF01717_consen 227 -----PLLADLNVDAFFLEFADRR 245 (324)
T ss_dssp -----HHHHCSS-SEEEEEETSST
T ss_pred -----HHHhhcccceEEeecccCC
Confidence 2223467788777766655
No 155
>PRK15108 biotin synthase; Provisional
Probab=43.27 E-value=35 Score=36.11 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCceEEEeee--eeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 100 AQSFKALAAAGVEGVVVEVW--WGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVw--WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
++.|+.||++|++.+.++.= -+....--+ .-+|....+.++.++++|+++.
T Consensus 136 ~e~l~~LkeAGld~~n~~leT~p~~f~~I~~-~~~~~~rl~~i~~a~~~G~~v~ 188 (345)
T PRK15108 136 ESQAQRLANAGLDYYNHNLDTSPEFYGNIIT-TRTYQERLDTLEKVRDAGIKVC 188 (345)
T ss_pred HHHHHHHHHcCCCEEeeccccChHhcCCCCC-CCCHHHHHHHHHHHHHcCCcee
Confidence 77899999999998887532 122221111 1166677777888888899763
No 156
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=43.23 E-value=79 Score=32.18 Aligned_cols=77 Identities=21% Similarity=0.131 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHcCCceEEEeee-eeeeecCCCcccccchHHHHHHHHHH-CCCcEEEEEeeeccCCCCCCCCccccChh
Q 009981 97 KAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGYFDLIVLASN-CGLKVRALLAFHQCGSGPGDPKWVPLPQW 174 (521)
Q Consensus 97 ~~~~~dL~~LK~aGVdgV~vdVw-WG~VE~~~p~~Ydws~Y~~l~~mv~~-~GLKv~~vlsfHqCGGNVGDt~~ipLP~W 174 (521)
+...+.++.|+++|+..|.+|+= |+..-. + ..++.....++++.+.+ .|..+ ..|-||+ +....
T Consensus 151 ~~~~~~~~~l~~~G~~~iqidEP~l~~~~~-s-~~~~~~~~~~~~~~~~~~~~~~~----~lHic~~--------~~~~~ 216 (321)
T cd03310 151 EFLREQVKELKNRGIVVVQIDEPSLGAVGA-G-AFEDLEIVDAALEEVSLKSGGDV----EVHLCAP--------LDYEA 216 (321)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCCccccccc-c-ccchHHHHHHHHHHHhhccCCce----EEEECCC--------CCHHH
Confidence 35667888999999999999986 665432 1 35788889999998876 33332 4588886 33445
Q ss_pred hhhhhccCCCeeeeCC
Q 009981 175 VLEEIDKDPDLAYSDR 190 (521)
Q Consensus 175 V~~~~~k~PDI~~tD~ 190 (521)
+.+ ...|++-.|-
T Consensus 217 l~~---~~vd~l~~D~ 229 (321)
T cd03310 217 LLE---LGVDVIGFDA 229 (321)
T ss_pred HHh---CCCCEEEEec
Confidence 555 4455555554
No 157
>PRK08508 biotin synthase; Provisional
Probab=43.20 E-value=28 Score=35.51 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCCc-------ccccchHHHHHHHHHHCCCcEEE
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPG-------VYDWRGYFDLIVLASNCGLKVRA 152 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~-------~Ydws~Y~~l~~mv~~~GLKv~~ 152 (521)
++.|+.||++|++.+.++ +|.. +. .-+|....+.++.+++.||++..
T Consensus 102 ~e~l~~Lk~aGld~~~~~-----lEt~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~s 155 (279)
T PRK08508 102 VEQLKELKKAGIFSYNHN-----LETS-KEFFPKICTTHTWEERFQTCENAKEAGLGLCS 155 (279)
T ss_pred HHHHHHHHHcCCCEEccc-----ccch-HHHhcCCCCCCCHHHHHHHHHHHHHcCCeecc
Confidence 788999999999999986 4432 21 24677777788889999998853
No 158
>PRK14706 glycogen branching enzyme; Provisional
Probab=43.05 E-value=54 Score=37.85 Aligned_cols=60 Identities=17% Similarity=0.098 Sum_probs=41.6
Q ss_pred eecCHHHHHHHH-HHHHHcCCceEEEeeeeeeeecCCCcccccch-----------------HHHHHHHHHHCCCcEEEE
Q 009981 92 KVKRRKAMAQSF-KALAAAGVEGVVVEVWWGVVERDRPGVYDWRG-----------------YFDLIVLASNCGLKVRAL 153 (521)
Q Consensus 92 ~v~~~~~~~~dL-~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~-----------------Y~~l~~mv~~~GLKv~~v 153 (521)
++-.-+.+.+.| ..||++||+.|.+=- +.|- |...+|.+ ++++++.+.++||+|+.=
T Consensus 162 ~~~ty~~~~~~l~~ylk~lG~t~velmP---v~e~--~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD 236 (639)
T PRK14706 162 WFLNYRELAHRLGEYVTYMGYTHVELLG---VMEH--PFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILD 236 (639)
T ss_pred CccCHHHHHHHHHHHHHHcCCCEEEccc---hhcC--CCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 344555666776 789999999998632 3342 34445544 899999999999999743
Q ss_pred Eee
Q 009981 154 LAF 156 (521)
Q Consensus 154 lsf 156 (521)
+-+
T Consensus 237 ~v~ 239 (639)
T PRK14706 237 WVP 239 (639)
T ss_pred ecc
Confidence 333
No 159
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=42.89 E-value=93 Score=31.78 Aligned_cols=84 Identities=13% Similarity=0.090 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCceEEEeee---eeeeec-CCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccChhh
Q 009981 100 AQSFKALAAAGVEGVVVEVW---WGVVER-DRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWV 175 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVw---WG~VE~-~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~WV 175 (521)
.+|++..+++|++.|.+-+= +-.-.. ...-...+....++++.+++.|++|.+.+. +.+-..|..|
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e----------da~r~~~~~l 143 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE----------DSFRSDLVDL 143 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE----------eeCCCCHHHH
Confidence 34788889999999887542 000000 012234577788899999999999987765 2333347777
Q ss_pred hhhhcc----CCC-eeeeCCCCc
Q 009981 176 LEEIDK----DPD-LAYSDRFGR 193 (521)
Q Consensus 176 ~~~~~k----~PD-I~~tD~~G~ 193 (521)
.+..+. -+| |.+.|-.|.
T Consensus 144 ~~~~~~~~~~g~~~i~l~Dt~G~ 166 (262)
T cd07948 144 LRVYRAVDKLGVNRVGIADTVGI 166 (262)
T ss_pred HHHHHHHHHcCCCEEEECCcCCC
Confidence 663322 233 455565553
No 160
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=42.86 E-value=1.3e+02 Score=30.15 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=49.8
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCC--cccc
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPK--WVPL 171 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~--~ipL 171 (521)
.+...+.+-|+...+.|++.|.+. ||.-.+. ...-.-+.++++++.+.+.|+-|+ .+ .||-|... ++|.
T Consensus 86 ~~~~~i~~Ai~~Ai~~gadIIn~S--~g~~~~~-~~~~~~~~l~~ai~~A~~~Gilvv--aa----AGN~g~~~~~~~~~ 156 (247)
T cd07491 86 ITPQSAAKAIEAAVEKKVDIISMS--WTIKKPE-DNDNDINELENAIKEALDRGILLF--CS----ASDQGAFTGDTYPP 156 (247)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEee--eeccccc-ccccchHHHHHHHHHHHhCCeEEE--Ee----cCCCCCcCCCcccC
Confidence 356789999999999999988877 6654332 112235788899999999886553 45 46766544 5666
Q ss_pred Chh
Q 009981 172 PQW 174 (521)
Q Consensus 172 P~W 174 (521)
|.+
T Consensus 157 pa~ 159 (247)
T cd07491 157 PAA 159 (247)
T ss_pred ccc
Confidence 764
No 161
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=42.77 E-value=42 Score=39.55 Aligned_cols=81 Identities=22% Similarity=0.356 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHcCCceEEEeee-eeeeecCCCcccccchHHHHH----HHHHHCCC--cEEEEEeeeccCCCCCCCCcc
Q 009981 97 KAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGYFDLI----VLASNCGL--KVRALLAFHQCGSGPGDPKWV 169 (521)
Q Consensus 97 ~~~~~dL~~LK~aGVdgV~vdVw-WG~VE~~~p~~Ydws~Y~~l~----~mv~~~GL--Kv~~vlsfHqCGGNVGDt~~i 169 (521)
.++.+.++.|.++|+..|-||+= |. |.-.-..-+|..|.+.+ ++ -..|+ .++ +.+|-|-||..+ |
T Consensus 586 ~alr~Ev~~L~~aG~~~IQIDEPal~--e~~~~~~~~~~~~l~~av~af~~-~~~~v~~~~~--I~~H~C~gnf~~---I 657 (766)
T PLN02475 586 LAIKDEVEDLEKAGITVIQIDEAALR--EGLPLRKSEHAFYLDWAVHSFRI-TNCGVQDTTQ--IHTHMCYSNFND---I 657 (766)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCcchh--hcCCcCccCHHHHHHHHHHHHHH-HHhcCCCCCE--EEEEEecCCcHH---H
Confidence 46677888999999999999998 73 32212335666555444 33 34455 444 788999999754 1
Q ss_pred ccChhhhhhhccCCCeeeeCC
Q 009981 170 PLPQWVLEEIDKDPDLAYSDR 190 (521)
Q Consensus 170 pLP~WV~~~~~k~PDI~~tD~ 190 (521)
+|. + .+-+-|+++.|-
T Consensus 658 -~~~-i---~~l~~D~~~~E~ 673 (766)
T PLN02475 658 -IHS-I---IDMDADVITIEN 673 (766)
T ss_pred -HHH-H---HhCCCCEEEEEc
Confidence 121 2 236677777663
No 162
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=42.65 E-value=32 Score=40.37 Aligned_cols=82 Identities=22% Similarity=0.264 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCCceEEEeee-eeeeecCCCccccc----chHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCcccc
Q 009981 97 KAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDW----RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPL 171 (521)
Q Consensus 97 ~~~~~dL~~LK~aGVdgV~vdVw-WG~VE~~~p~~Ydw----s~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipL 171 (521)
.++.+.++.|.++|+..|-||+= |- |.-....-+| +++-+.++.+-+ |++--..+++|-|=||..+ | +
T Consensus 581 ~al~~Ev~~L~~aG~~~IQiDEPal~--e~~~~~~~~~~~~l~~~v~a~n~a~~-~~~~~~~i~tH~C~g~~~~---i-~ 653 (758)
T PRK05222 581 LAIRDEVLDLEAAGIKIIQIDEPALR--EGLPLRRSDWDAYLDWAVEAFRLATS-GVKDETQIHTHMCYSEFND---I-I 653 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCchhh--hcCcccccCHHHHHHHHHHHHHHHHc-CCCCCCEEEEEEeccChHH---H-H
Confidence 46778889999999999999998 73 3322234466 444566666655 6642223899999999765 1 2
Q ss_pred ChhhhhhhccCCCeeeeC
Q 009981 172 PQWVLEEIDKDPDLAYSD 189 (521)
Q Consensus 172 P~WV~~~~~k~PDI~~tD 189 (521)
|. +. +-+-|.++.+
T Consensus 654 ~~-i~---~l~vD~~~lE 667 (758)
T PRK05222 654 DA-IA---ALDADVISIE 667 (758)
T ss_pred HH-HH---hCCCCEEEEE
Confidence 32 22 3577877776
No 163
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=42.41 E-value=71 Score=34.05 Aligned_cols=84 Identities=10% Similarity=0.078 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCCceEEEeee--eeeeec--CCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccChh
Q 009981 99 MAQSFKALAAAGVEGVVVEVW--WGVVER--DRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQW 174 (521)
Q Consensus 99 ~~~dL~~LK~aGVdgV~vdVw--WG~VE~--~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~W 174 (521)
..+|+++++++|++.|.+-+- -..++. .......++-..+.++.+++.|++|...+. +.+..-|..
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e----------da~r~~~~~ 142 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE----------DATRTDIDF 142 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe----------ecCCCCHHH
Confidence 367899999999999887443 222221 012334567788999999999999974443 233445777
Q ss_pred hhhhhcc----CC-CeeeeCCCC
Q 009981 175 VLEEIDK----DP-DLAYSDRFG 192 (521)
Q Consensus 175 V~~~~~k----~P-DI~~tD~~G 192 (521)
+.+..+. -+ .|.+.|-.|
T Consensus 143 l~~~~~~~~~~g~~~i~l~DT~G 165 (363)
T TIGR02090 143 LIKVFKRAEEAGADRINIADTVG 165 (363)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCC
Confidence 7764221 12 255566555
No 164
>PRK05402 glycogen branching enzyme; Provisional
Probab=42.34 E-value=63 Score=37.61 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=41.4
Q ss_pred CeecCHHHHHHHH-HHHHHcCCceEEEeeeeeeeecCCCcccccc-----------------hHHHHHHHHHHCCCcEEE
Q 009981 91 GKVKRRKAMAQSF-KALAAAGVEGVVVEVWWGVVERDRPGVYDWR-----------------GYFDLIVLASNCGLKVRA 152 (521)
Q Consensus 91 ~~v~~~~~~~~dL-~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws-----------------~Y~~l~~mv~~~GLKv~~ 152 (521)
++.-+-+.+.+.| ..||++||+.|.+-=- .|- |...+|. .++++++.++++||+|+.
T Consensus 259 ~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi---~e~--~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~Vil 333 (726)
T PRK05402 259 GRFLSYRELADQLIPYVKEMGFTHVELLPI---AEH--PFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVIL 333 (726)
T ss_pred CcccCHHHHHHHHHHHHHHcCCCEEEECCc---ccC--CCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 3344556777785 9999999999987432 121 1111222 389999999999999974
Q ss_pred EEee
Q 009981 153 LLAF 156 (521)
Q Consensus 153 vlsf 156 (521)
=+-+
T Consensus 334 D~V~ 337 (726)
T PRK05402 334 DWVP 337 (726)
T ss_pred EECC
Confidence 4444
No 165
>PRK00957 methionine synthase; Provisional
Probab=42.22 E-value=41 Score=34.50 Aligned_cols=80 Identities=24% Similarity=0.338 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHcCCceEEEeee-eeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccChhh
Q 009981 97 KAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWV 175 (521)
Q Consensus 97 ~~~~~dL~~LK~aGVdgV~vdVw-WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~WV 175 (521)
+++.+.++.|+++|++.|.+|+= |+. +..+.+...+.++.+-+ ++++. ...|-|| |. . ++=..+
T Consensus 144 ~~~~~~i~~l~~~G~~~IqiDEP~l~~------~~~~~~~~~~~~~~~~~-~i~~~--v~lH~CG-~~---~--~i~~~l 208 (305)
T PRK00957 144 RALRKEAEALEKAGVAMIQIDEPILST------GAYDLEVAKKAIDIITK-GLNVP--VAMHVCG-DV---S--NIIDDL 208 (305)
T ss_pred HHHHHHHHHHHHcCCCEEEecChhhhc------CCchHHHHHHHHHHHHH-hhCCc--eEEEECC-Cc---H--HHHHHH
Confidence 46677888999999999999975 764 11234454555555443 34443 4679995 22 1 111233
Q ss_pred hhhhccCCCeeeeCCCCcc
Q 009981 176 LEEIDKDPDLAYSDRFGRR 194 (521)
Q Consensus 176 ~~~~~k~PDI~~tD~~G~r 194 (521)
. +..-|.+..|-.|.+
T Consensus 209 ~---~~~vd~i~ld~~~~~ 224 (305)
T PRK00957 209 L---KFNVDILDHEFASNK 224 (305)
T ss_pred H---hCCCCEEEEeecCCC
Confidence 3 366788888876654
No 166
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=42.20 E-value=57 Score=33.96 Aligned_cols=66 Identities=17% Similarity=0.332 Sum_probs=46.8
Q ss_pred HHHHHHHHHH---HcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEee-------------eccCC
Q 009981 98 AMAQSFKALA---AAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAF-------------HQCGS 161 (521)
Q Consensus 98 ~~~~dL~~LK---~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsf-------------HqCGG 161 (521)
.++.||+.|| ++|.+.+..- =-||-+.|.+..+.+++.|+.+-++.+. +-||
T Consensus 161 ~~~~dl~~Lk~K~~aGA~~~iTQ-----------~~Fd~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~G- 228 (296)
T PRK09432 161 SAQADLINLKRKVDAGANRAITQ-----------FFFDVESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTN- 228 (296)
T ss_pred CHHHHHHHHHHHHHcCCCeeecc-----------cccchHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccC-
Confidence 3556666665 5999876543 3489999999999999999665443331 2344
Q ss_pred CCCCCCccccChhhhhhhccC
Q 009981 162 GPGDPKWVPLPQWVLEEIDKD 182 (521)
Q Consensus 162 NVGDt~~ipLP~WV~~~~~k~ 182 (521)
|.+|.|+.+..++.
T Consensus 229 -------v~vP~~l~~~l~~~ 242 (296)
T PRK09432 229 -------VRIPAWMAKMFDGL 242 (296)
T ss_pred -------CCCCHHHHHHHHhc
Confidence 88999999976654
No 167
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=41.62 E-value=76 Score=31.97 Aligned_cols=71 Identities=11% Similarity=0.239 Sum_probs=51.8
Q ss_pred ecCHHHHHHHHHHHHHcC--CceEEEeeeeeeeecCCCccc-------ccchHHHHHHHHHHCCCcEEEEEeeeccCCCC
Q 009981 93 VKRRKAMAQSFKALAAAG--VEGVVVEVWWGVVERDRPGVY-------DWRGYFDLIVLASNCGLKVRALLAFHQCGSGP 163 (521)
Q Consensus 93 v~~~~~~~~dL~~LK~aG--VdgV~vdVwWG~VE~~~p~~Y-------dws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNV 163 (521)
-.+.+.+.+-++.+++.| +++|.+|.+|..- -+.+ .|.-.+++++.+++.|+|+++++.
T Consensus 20 ~~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~----~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~-------- 87 (265)
T cd06589 20 YGDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG----YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWID-------- 87 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCccEEEECcccccC----CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeC--------
Confidence 467888999999999855 6799999998632 2333 355678999999999999974443
Q ss_pred CCCCccccChhhhhhhc
Q 009981 164 GDPKWVPLPQWVLEEID 180 (521)
Q Consensus 164 GDt~~ipLP~WV~~~~~ 180 (521)
|.| -.|..+..+
T Consensus 88 ---P~v--~~w~~~~~~ 99 (265)
T cd06589 88 ---PYI--REWWAEVVK 99 (265)
T ss_pred ---hhH--HHHHHHHHH
Confidence 444 567766433
No 168
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=41.26 E-value=46 Score=34.93 Aligned_cols=54 Identities=22% Similarity=0.174 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeee--eeeeecCCCcccccchHHHHHHHHHHCCC
Q 009981 95 RRKAMAQSFKALAAAGVEGVVVEVW--WGVVERDRPGVYDWRGYFDLIVLASNCGL 148 (521)
Q Consensus 95 ~~~~~~~dL~~LK~aGVdgV~vdVw--WG~VE~~~p~~Ydws~Y~~l~~mv~~~GL 148 (521)
+++-+.-=-++.+.+|.||+|+.|. =+.-=.++++|-++..++++++.++.-+.
T Consensus 227 rr~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Qql~~~~f~~l~~~~~~~~~ 282 (286)
T COG2876 227 RRDLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQQLTPEEFEELVKELRALAD 282 (286)
T ss_pred chhhHHHHHHHHHhccCCeeEEEecCCcccccCcccccCCHHHHHHHHHHHHHHhh
Confidence 3344444445668899999999998 44444567999999999999999987654
No 169
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=41.07 E-value=40 Score=40.96 Aligned_cols=48 Identities=17% Similarity=0.095 Sum_probs=36.9
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEE
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRAL 153 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~v 153 (521)
...+++.+.+||+.||++|+|.|++. ...+. .+..++|-+.||-|+.=
T Consensus 366 ~a~t~e~~~~di~lmK~~g~NaVR~s---HyP~~-----------p~fydlcDe~GilV~dE 413 (1027)
T PRK09525 366 QVMDEETMVQDILLMKQHNFNAVRCS---HYPNH-----------PLWYELCDRYGLYVVDE 413 (1027)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEec---CCCCC-----------HHHHHHHHHcCCEEEEe
Confidence 34688999999999999999999992 22221 35678899999988643
No 170
>PRK09875 putative hydrolase; Provisional
Probab=40.97 E-value=73 Score=33.24 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=46.6
Q ss_pred CCeecCHHHHHHHHHHHHHcCCceEEEeee-eeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCc
Q 009981 90 GGKVKRRKAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKW 168 (521)
Q Consensus 90 ~~~v~~~~~~~~dL~~LK~aGVdgV~vdVw-WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ 168 (521)
+..+.+.+...+.|+.+|++|+..| ||+= .|+ |+ --..+.++.++.|+.|++.=.|| -.
T Consensus 27 ~~~l~~~~~~~~el~~~~~~Gg~ti-Vd~T~~g~------GR----d~~~l~~is~~tgv~Iv~~TG~y---------~~ 86 (292)
T PRK09875 27 DCRLDQYAFICQEMNDLMTRGVRNV-IEMTNRYM------GR----NAQFMLDVMRETGINVVACTGYY---------QD 86 (292)
T ss_pred ccccccHHHHHHHHHHHHHhCCCeE-EecCCCcc------Cc----CHHHHHHHHHHhCCcEEEcCcCC---------CC
Confidence 3457888999999999999999987 5543 332 11 24677888899999996333332 22
Q ss_pred cccChhhhh
Q 009981 169 VPLPQWVLE 177 (521)
Q Consensus 169 ipLP~WV~~ 177 (521)
.-.|.|+.+
T Consensus 87 ~~~p~~~~~ 95 (292)
T PRK09875 87 AFFPEHVAT 95 (292)
T ss_pred ccCCHHHhc
Confidence 336788864
No 171
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=40.93 E-value=57 Score=33.23 Aligned_cols=73 Identities=14% Similarity=0.350 Sum_probs=48.8
Q ss_pred HHHHHHHHH---HcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCC-----CCCCCccc
Q 009981 99 MAQSFKALA---AAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSG-----PGDPKWVP 170 (521)
Q Consensus 99 ~~~dL~~LK---~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGN-----VGDt~~ip 170 (521)
.+.+++.|| ++|.+.+..-. -||-..|.++.+.+++.|+.+-++.++--|..- .-.-|.|.
T Consensus 143 ~~~~~~~L~~K~~aGA~f~iTQ~-----------~fd~~~~~~~~~~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~~~Gv~ 211 (272)
T TIGR00676 143 LEEDIENLKRKVDAGADYAITQL-----------FFDNDDYYRFVDRCRAAGIDVPIIPGIMPITNFKQLLRFAERCGAE 211 (272)
T ss_pred HHHHHHHHHHHHHcCCCeEeecc-----------ccCHHHHHHHHHHHHHcCCCCCEecccCCcCCHHHHHHHHhccCCC
Confidence 556677665 58998665432 489999999999999999887555444322210 00025588
Q ss_pred cChhhhhhhccC
Q 009981 171 LPQWVLEEIDKD 182 (521)
Q Consensus 171 LP~WV~~~~~k~ 182 (521)
+|.|+.+..++.
T Consensus 212 vP~~~~~~l~~~ 223 (272)
T TIGR00676 212 IPAWLVKRLEKY 223 (272)
T ss_pred CCHHHHHHHHhc
Confidence 999999976553
No 172
>PLN02960 alpha-amylase
Probab=40.22 E-value=75 Score=38.28 Aligned_cols=55 Identities=20% Similarity=0.189 Sum_probs=40.0
Q ss_pred ecCHHHHH-HHHHHHHHcCCceEEEeeeeeeeecCCCcccccch-----------------HHHHHHHHHHCCCcEEE
Q 009981 93 VKRRKAMA-QSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRG-----------------YFDLIVLASNCGLKVRA 152 (521)
Q Consensus 93 v~~~~~~~-~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~-----------------Y~~l~~mv~~~GLKv~~ 152 (521)
+-.-+.+. +-|..||++||+.|.+- .+.|- ++...|.+ ++++++.+.++||+|+.
T Consensus 412 ~gtf~~~~e~~LdYLk~LGvt~IeLm---Pv~e~--~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VIL 484 (897)
T PLN02960 412 ISSFKEFTQKVLPHVKKAGYNAIQLI---GVQEH--KDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFL 484 (897)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEC---CcccC--CCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEE
Confidence 44556665 55999999999999874 23332 33344544 89999999999999973
No 173
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=40.18 E-value=53 Score=31.95 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHC--CCcEE
Q 009981 97 KAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNC--GLKVR 151 (521)
Q Consensus 97 ~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~--GLKv~ 151 (521)
+.+++-|+.|+++||+||+|.-. .++.++++. +++|+
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~~~------------------g~~~~~k~~~~~~~i~ 40 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVSNP------------------GLLELLKELGPDLKII 40 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEcCH------------------HHHHHHHHhCCCCcEE
Confidence 57889999999999999999743 367888888 66765
No 174
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=39.76 E-value=46 Score=35.59 Aligned_cols=67 Identities=22% Similarity=0.278 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHcCCceEEEeee-eeee-ecC-----CCcccc----cchHHHHHHHHHHCCCcEEEEEeeeccCCCCC
Q 009981 97 KAMAQSFKALAAAGVEGVVVEVW-WGVV-ERD-----RPGVYD----WRGYFDLIVLASNCGLKVRALLAFHQCGSGPG 164 (521)
Q Consensus 97 ~~~~~dL~~LK~aGVdgV~vdVw-WG~V-E~~-----~p~~Yd----ws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVG 164 (521)
+++.+.++.|.++|+..|-+|.= |+.. .+. .+...+ =..|-++++.+-+ |+.--..+++|-|-||-.
T Consensus 170 ~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~-~~p~d~~v~~HiC~Gn~~ 247 (368)
T PRK06520 170 KTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALA-GKPADLTIGLHVCRGNFR 247 (368)
T ss_pred HHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEeecCCCC
Confidence 46778889999999999999998 8752 110 011111 1223344444433 663333489999998864
No 175
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=39.70 E-value=96 Score=37.12 Aligned_cols=65 Identities=17% Similarity=0.075 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCccc-------------ccchHHHHHHHHHHCCCcEEEEEeeeccC
Q 009981 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVY-------------DWRGYFDLIVLASNCGLKVRALLAFHQCG 160 (521)
Q Consensus 95 ~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Y-------------dws~Y~~l~~mv~~~GLKv~~vlsfHqCG 160 (521)
+-+.+.+-|..|+++||+.|-+.-.+..... +.--| ..+.++++++.++++||+|+.=+-+--++
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~g-s~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPG-STHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCC-CCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 4567899999999999999977665432211 12233 26779999999999999998655553333
No 176
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=39.34 E-value=38 Score=34.66 Aligned_cols=47 Identities=23% Similarity=0.336 Sum_probs=36.5
Q ss_pred HHHHHHcCCceEEEeeeeeeeecCCCcc---cccchHHHHHHHHHHCCCcEEEEEe
Q 009981 103 FKALAAAGVEGVVVEVWWGVVERDRPGV---YDWRGYFDLIVLASNCGLKVRALLA 155 (521)
Q Consensus 103 L~~LK~aGVdgV~vdVwWG~VE~~~p~~---Ydws~Y~~l~~mv~~~GLKv~~vls 155 (521)
+..++++|.+|||+|-+ .+.+..- .+...+.+.++.+|++||+.- |+
T Consensus 137 ~~~a~~aG~~gvMlDTa----~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~a--LA 186 (235)
T PF04476_consen 137 PEIAAEAGFDGVMLDTA----DKDGGSLFDHLSEEELAEFVAQARAHGLMCA--LA 186 (235)
T ss_pred HHHHHHcCCCEEEEecc----cCCCCchhhcCCHHHHHHHHHHHHHccchhh--cc
Confidence 45679999999999987 4554444 456777788999999999985 55
No 177
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=38.98 E-value=72 Score=32.92 Aligned_cols=82 Identities=21% Similarity=0.314 Sum_probs=45.3
Q ss_pred CCCcceEEeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeee--eeee-e----c------CCCcccc-------
Q 009981 73 RNGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVW--WGVV-E----R------DRPGVYD------- 132 (521)
Q Consensus 73 ~~~vpv~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVw--WG~V-E----~------~~p~~Yd------- 132 (521)
.++.|.|-+. ||.-.-=.--+.+.++.-|+.+|+.|.+.|.+.+. |-.. . + ..++++|
T Consensus 8 ~dG~Pff~lg--dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~ 85 (289)
T PF13204_consen 8 ADGTPFFWLG--DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPA 85 (289)
T ss_dssp TTS-B--EEE--EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----
T ss_pred CCCCEEeehh--HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHH
Confidence 3577877766 55542111134577888899999999999999999 5432 1 1 1122233
Q ss_pred -cchHHHHHHHHHHCCCcEEEEEeee
Q 009981 133 -WRGYFDLIVLASNCGLKVRALLAFH 157 (521)
Q Consensus 133 -ws~Y~~l~~mv~~~GLKv~~vlsfH 157 (521)
|...+++++++.+.||-+. ++-+|
T Consensus 86 YF~~~d~~i~~a~~~Gi~~~-lv~~w 110 (289)
T PF13204_consen 86 YFDHLDRRIEKANELGIEAA-LVPFW 110 (289)
T ss_dssp HHHHHHHHHHHHHHTT-EEE-EESS-
T ss_pred HHHHHHHHHHHHHHCCCeEE-EEEEE
Confidence 4567899999999999996 44455
No 178
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=38.81 E-value=56 Score=33.78 Aligned_cols=44 Identities=18% Similarity=0.168 Sum_probs=38.1
Q ss_pred HHHHHHHcCCceEEEeeeeeeeecCCCcccccchHH----HHHHHHHHCCCcEEEEEe
Q 009981 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYF----DLIVLASNCGLKVRALLA 155 (521)
Q Consensus 102 dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~----~l~~mv~~~GLKv~~vls 155 (521)
.-.+||++|+++|.|+ .++++-.+.-=+ +-+..+.++||+. |+|
T Consensus 80 S~~mL~d~G~~~viiG--------HSERR~~~~E~d~~i~~K~~aa~~~Gl~p--IlC 127 (251)
T COG0149 80 SAEMLKDLGAKYVLIG--------HSERRLYFGETDELIAKKVKAAKEAGLTP--ILC 127 (251)
T ss_pred CHHHHHHcCCCEEEEC--------ccccccccccchHHHHHHHHHHHHCCCeE--EEE
Confidence 4578999999999998 468888999888 7788899999997 488
No 179
>PTZ00445 p36-lilke protein; Provisional
Probab=38.68 E-value=70 Score=32.53 Aligned_cols=64 Identities=13% Similarity=0.206 Sum_probs=47.4
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccc------------hHHHHHHHHHHCCCcEEEEEee
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWR------------GYFDLIVLASNCGLKVRALLAF 156 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws------------~Y~~l~~mv~~~GLKv~~vlsf 156 (521)
.++..+....=.+.||+.||.+|-+|-==-+|...+.|-.+.. .+++++..++++||+|. |..|
T Consensus 24 ~~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~-VVTf 99 (219)
T PTZ00445 24 HLNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKIS-VVTF 99 (219)
T ss_pred cCCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEE-EEEc
Confidence 4567777777788899999999998864555554444544443 48889999999999997 4444
No 180
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=38.60 E-value=86 Score=35.51 Aligned_cols=99 Identities=16% Similarity=0.169 Sum_probs=62.1
Q ss_pred ccchH---HHHHHHHHHCCCcEEEEEeeeccCCCCCCCCcccc-ChhhhhhhccCCCeeeeCCCCcccccc-----cccc
Q 009981 132 DWRGY---FDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPL-PQWVLEEIDKDPDLAYSDRFGRRNMEY-----ISLG 202 (521)
Q Consensus 132 dws~Y---~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipL-P~WV~~~~~k~PDI~~tD~~G~r~~Ec-----lSlg 202 (521)
.|.-| .+|.++.+++|+++. =||.+||.+|- .-+ |.-+.+..+.+|..+-...+|...-.+ .+ +
T Consensus 224 ~~al~~Aq~~L~e~~ee~gV~l~---pfhGrGgspfR---GGg~P~n~a~il~qppG~~t~TeQsafRYd~p~e~v~~-A 296 (506)
T TIGR02751 224 VLSNKYALSRLYELSEETGISIY---PIIGAGSLPFR---GHLSPENIERVLDEYPGVYTFTVQSAFKYDYPREEVVA-A 296 (506)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEE---EEeecCCCCcC---CCCChhhHHHHHhcCCCceEEeeechhhcCCCHHHHHH-H
Confidence 45544 567788899999995 57889999874 334 777776777899988777777432111 11 0
Q ss_pred cC----cccccCCCCchHHHHHHHHHHHHHHhHhhhhhhh
Q 009981 203 CD----ILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIIT 238 (521)
Q Consensus 203 ~D----~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~g~vI~ 238 (521)
+- ..+- ....+.+..++.|..+.+...+.|.++|.
T Consensus 297 v~~~~~a~~~-~~~~~~~e~~e~m~~ia~~s~~~Yr~~V~ 335 (506)
T TIGR02751 297 IRRINEKLPN-APPILIDEEEEIIVEIIEIYAKRYQKIIE 335 (506)
T ss_pred HHHHHhcccC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000 01123466777888888888887766554
No 181
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=38.40 E-value=70 Score=35.41 Aligned_cols=53 Identities=6% Similarity=0.050 Sum_probs=42.8
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEee
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAF 156 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsf 156 (521)
.+.+..++++++..++||+.|+|-.--.-++ -..+.++.++++|+++++.+|+
T Consensus 93 ~pddvv~~~v~~A~~~Gvd~irif~~lnd~~----------n~~~~v~~ak~~G~~v~~~i~~ 145 (448)
T PRK12331 93 YADDVVESFVQKSVENGIDIIRIFDALNDVR----------NLETAVKATKKAGGHAQVAISY 145 (448)
T ss_pred CchhhHHHHHHHHHHCCCCEEEEEEecCcHH----------HHHHHHHHHHHcCCeEEEEEEe
Confidence 3557889999999999999988877533332 3788999999999999987875
No 182
>PRK10426 alpha-glucosidase; Provisional
Probab=38.32 E-value=1.3e+02 Score=34.62 Aligned_cols=87 Identities=14% Similarity=0.214 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHcC--CceEEEeeeeeeee-cCCCcc---cc-----cchHHHHHHHHHHCCCcEEEEEeeeccCCCCC
Q 009981 96 RKAMAQSFKALAAAG--VEGVVVEVWWGVVE-RDRPGV---YD-----WRGYFDLIVLASNCGLKVRALLAFHQCGSGPG 164 (521)
Q Consensus 96 ~~~~~~dL~~LK~aG--VdgV~vdVwWG~VE-~~~p~~---Yd-----ws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVG 164 (521)
.+.+.+-++.+++.| +|+|-+|-|-+.-. .-+... |. |--.+++++.+++.|+|+++++-
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~--------- 290 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYIN--------- 290 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEc---------
Confidence 456778889999987 58888886533211 111111 22 33458999999999999986654
Q ss_pred CCCccccChhhhhhhccCCCeeeeCCCCcc
Q 009981 165 DPKWVPLPQWVLEEIDKDPDLAYSDRFGRR 194 (521)
Q Consensus 165 Dt~~ipLP~WV~~~~~k~PDI~~tD~~G~r 194 (521)
|.+..-.-+.+++.+ -+.+.+|.+|..
T Consensus 291 --P~v~~~~~~y~e~~~-~gy~vk~~~g~~ 317 (635)
T PRK10426 291 --PYLASDGDLCEEAAE-KGYLAKDADGGD 317 (635)
T ss_pred --CccCCCCHHHHHHHH-CCcEEECCCCCE
Confidence 333332334455544 388999998874
No 183
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=38.17 E-value=43 Score=34.38 Aligned_cols=68 Identities=13% Similarity=0.066 Sum_probs=42.4
Q ss_pred CCcceEEeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEE
Q 009981 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRAL 153 (521)
Q Consensus 74 ~~vpv~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~v 153 (521)
-+|+||-+-.|--+. .-.+.+++-|+.+|++|++.|+|.. |--.-.=+-..++++++++.|+||.+=
T Consensus 66 ~gV~v~~GGtl~E~a-----~~q~~~~~yl~~~k~lGf~~IEiSd--------Gti~l~~~~r~~~I~~~~~~Gf~v~~E 132 (244)
T PF02679_consen 66 HGVYVYPGGTLFEVA-----YQQGKFDEYLEECKELGFDAIEISD--------GTIDLPEEERLRLIRKAKEEGFKVLSE 132 (244)
T ss_dssp TT-EEEE-HHHHHHH-----HHTT-HHHHHHHHHHCT-SEEEE----------SSS---HHHHHHHHHHHCCTTSEEEEE
T ss_pred cCCeEeCCcHHHHHH-----HhcChHHHHHHHHHHcCCCEEEecC--------CceeCCHHHHHHHHHHHHHCCCEEeec
Confidence 478888777665442 2267888999999999999998852 222233345667899999999998543
Q ss_pred E
Q 009981 154 L 154 (521)
Q Consensus 154 l 154 (521)
.
T Consensus 133 v 133 (244)
T PF02679_consen 133 V 133 (244)
T ss_dssp E
T ss_pred c
Confidence 3
No 184
>PLN02784 alpha-amylase
Probab=38.08 E-value=65 Score=38.75 Aligned_cols=66 Identities=18% Similarity=0.143 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCccccc----------chHHHHHHHHHHCCCcEEEEEee-eccCC
Q 009981 96 RKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDW----------RGYFDLIVLASNCGLKVRALLAF-HQCGS 161 (521)
Q Consensus 96 ~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydw----------s~Y~~l~~mv~~~GLKv~~vlsf-HqCGG 161 (521)
++.+.+.|..|+++||++|-+.--..-+.+.|=..+|+ ..++++++.++++||+|++=+-+ |-||.
T Consensus 520 ~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~ 596 (894)
T PLN02784 520 YMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAH 596 (894)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccccccc
Confidence 68999999999999999998876422222222122232 35899999999999999754433 77764
No 185
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=37.64 E-value=2.7e+02 Score=29.14 Aligned_cols=86 Identities=22% Similarity=0.358 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHHcC--CceEEEeeeeeeeecCCCc-----cc-----ccchHHHHHHHHHHCCCcEEEEEeeeccCCC
Q 009981 95 RRKAMAQSFKALAAAG--VEGVVVEVWWGVVERDRPG-----VY-----DWRGYFDLIVLASNCGLKVRALLAFHQCGSG 162 (521)
Q Consensus 95 ~~~~~~~dL~~LK~aG--VdgV~vdVwWG~VE~~~p~-----~Y-----dws~Y~~l~~mv~~~GLKv~~vlsfHqCGGN 162 (521)
..+.+.+=++.+++.| +++|.+|.|=...+.. .+ .| .|.-.+++++.+++.|+||++++-
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~-~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~------- 92 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETS-FGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYIN------- 92 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCccccc-ccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEec-------
Confidence 7788888999999975 5788888651111111 12 12 345679999999999999985554
Q ss_pred CCCCCccc--cChhhhhhhccCCCeeeeCCCCcc
Q 009981 163 PGDPKWVP--LPQWVLEEIDKDPDLAYSDRFGRR 194 (521)
Q Consensus 163 VGDt~~ip--LP~WV~~~~~k~PDI~~tD~~G~r 194 (521)
|.|. .+.. .+++.+ -+.+.++.+|..
T Consensus 93 ----P~v~~~~~~~-y~~~~~-~g~~vk~~~g~~ 120 (317)
T cd06594 93 ----PYLADDGPLY-YEEAKD-AGYLVKDADGSP 120 (317)
T ss_pred ----CceecCCchh-HHHHHH-CCeEEECCCCCe
Confidence 2222 1222 244443 388999998864
No 186
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=37.56 E-value=76 Score=33.96 Aligned_cols=67 Identities=9% Similarity=-0.087 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCC
Q 009981 97 KAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGP 163 (521)
Q Consensus 97 ~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNV 163 (521)
....-+.+.+|++|.|+|.+-+||+-=++..-..-......++.+.+++.||-+..-+=...-|+++
T Consensus 106 ~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~ 172 (340)
T PRK12858 106 LLDNWSVRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSD 172 (340)
T ss_pred ccccccHHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccc
Confidence 3444557789999999999999999321110156788899999999999999987422233444433
No 187
>PRK02227 hypothetical protein; Provisional
Probab=37.44 E-value=40 Score=34.55 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCceEEEeeeeeeeecCCCc---ccccchHHHHHHHHHHCCCcEE
Q 009981 101 QSFKALAAAGVEGVVVEVWWGVVERDRPG---VYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 101 ~dL~~LK~aGVdgV~vdVwWG~VE~~~p~---~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
.-+..++++|++|+|||-+ ++.|-. .+++..+.+.++++|++||+.-
T Consensus 135 ~l~~~a~~aGf~g~MlDTa----~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~g 184 (238)
T PRK02227 135 SLPAIAADAGFDGAMLDTA----IKDGKSLFDHMDEEELAEFVAEARSHGLMSA 184 (238)
T ss_pred HHHHHHHHcCCCEEEEecc----cCCCcchHhhCCHHHHHHHHHHHHHcccHhH
Confidence 4567889999999999976 454433 3566788889999999999984
No 188
>PRK09505 malS alpha-amylase; Reviewed
Probab=37.25 E-value=72 Score=37.23 Aligned_cols=62 Identities=11% Similarity=0.089 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeee-cC-----------CCccc-------------ccchHHHHHHHHHHCCCc
Q 009981 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVE-RD-----------RPGVY-------------DWRGYFDLIVLASNCGLK 149 (521)
Q Consensus 95 ~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE-~~-----------~p~~Y-------------dws~Y~~l~~mv~~~GLK 149 (521)
|.+.+.+-|..||++||++|-|.--.--+. .. +...| ..+.++++++.+++.|||
T Consensus 228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 567799999999999999998753211110 00 00111 235799999999999999
Q ss_pred EEEEEee
Q 009981 150 VRALLAF 156 (521)
Q Consensus 150 v~~vlsf 156 (521)
|+.=+-+
T Consensus 308 VilD~V~ 314 (683)
T PRK09505 308 ILFDVVM 314 (683)
T ss_pred EEEEECc
Confidence 9855554
No 189
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=36.88 E-value=3.5e+02 Score=28.11 Aligned_cols=63 Identities=14% Similarity=0.337 Sum_probs=45.6
Q ss_pred ecCHHHHHHHHHHHHHcC--CceEEEeeeeeeeec--CCCccccc-----chHHHHHHHHHHCCCcEEEEEe
Q 009981 93 VKRRKAMAQSFKALAAAG--VEGVVVEVWWGVVER--DRPGVYDW-----RGYFDLIVLASNCGLKVRALLA 155 (521)
Q Consensus 93 v~~~~~~~~dL~~LK~aG--VdgV~vdVwWG~VE~--~~p~~Ydw-----s~Y~~l~~mv~~~GLKv~~vls 155 (521)
..+.+.+.+-++.+++.| +++|.+|.-|-.... ..-+.|+| .--+++++.+++.|+||++++-
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~ 91 (317)
T cd06598 20 YRNWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITE 91 (317)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEc
Confidence 457788889999999877 588999975643322 11234544 3578999999999999986654
No 190
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=36.76 E-value=1.3e+02 Score=30.29 Aligned_cols=101 Identities=18% Similarity=0.252 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeec----CCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccChhh
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVER----DRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWV 175 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~----~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~WV 175 (521)
.++++..+++|++.|.+-+-..-.-. ......-++...++++.+++.|+++. +++ -|.... -|..+
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~-------~~~~~~-~~~~~ 141 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS--VGA-------EDASRA-DPDFL 141 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE--Eee-------ccCCCC-CHHHH
Confidence 56678888999999888773221100 00112235678899999999999876 332 233333 36666
Q ss_pred hhhhcc----CC-CeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHH
Q 009981 176 LEEIDK----DP-DLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTF 229 (521)
Q Consensus 176 ~~~~~k----~P-DI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~f 229 (521)
.+..++ -+ .|.+.|-.|.- +| +..+++.+.+++++
T Consensus 142 ~~~~~~~~~~G~~~i~l~DT~G~~------------------~P-~~v~~lv~~l~~~~ 181 (259)
T cd07939 142 IEFAEVAQEAGADRLRFADTVGIL------------------DP-FTTYELIRRLRAAT 181 (259)
T ss_pred HHHHHHHHHCCCCEEEeCCCCCCC------------------CH-HHHHHHHHHHHHhc
Confidence 653321 12 35666666632 46 44555667777655
No 191
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=36.65 E-value=89 Score=31.91 Aligned_cols=100 Identities=13% Similarity=0.132 Sum_probs=64.0
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccCh
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQ 173 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~ 173 (521)
.+.+..+.++++..+.|++.|+|-+-.. |.+...+.++.+++.|+++++-+++ . |. +..-|.
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~----------~~~~~~~~i~~ak~~G~~v~~~i~~--~-----~~-~~~~~~ 149 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALN----------DVRNLEVAIKAVKKAGKHVEGAICY--T-----GS-PVHTLE 149 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCC----------hHHHHHHHHHHHHHCCCeEEEEEEe--c-----CC-CCCCHH
Confidence 4556789999999999999999865422 2567788999999999998764442 0 01 233466
Q ss_pred hhhhhhc----cCCC-eeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHh
Q 009981 174 WVLEEID----KDPD-LAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFR 230 (521)
Q Consensus 174 WV~~~~~----k~PD-I~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa 230 (521)
.+.+..+ .-+| |.+.|-.|. -+| +...+..+.+++++.
T Consensus 150 ~~~~~~~~~~~~Ga~~i~l~DT~G~------------------~~P-~~v~~lv~~l~~~~~ 192 (275)
T cd07937 150 YYVKLAKELEDMGADSICIKDMAGL------------------LTP-YAAYELVKALKKEVG 192 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCC------------------CCH-HHHHHHHHHHHHhCC
Confidence 6665322 1122 455555553 236 455566777776653
No 192
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=36.40 E-value=3.5e+02 Score=27.88 Aligned_cols=60 Identities=13% Similarity=0.010 Sum_probs=43.2
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEee
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAF 156 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsf 156 (521)
..++.+.++-..--+||...|.+-+= =..+|-...|.+-|.++++.+|+..=.+++-+++
T Consensus 23 ~tpeEia~~A~~c~~AGAa~vH~H~R---~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Tt 82 (272)
T PF05853_consen 23 ITPEEIAADAVACYEAGAAIVHIHAR---DDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTT 82 (272)
T ss_dssp -SHHHHHHHHHHHHHHTESEEEE-EE----TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEES
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeecC---CCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCC
Confidence 56799999999999999999999853 2334556799999999999999994444433664
No 193
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=36.23 E-value=89 Score=37.02 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=47.8
Q ss_pred cceEEeeecceecCCCeecCHHHH-HHHHHHHHHcCCceEEEeeeeeeeecCCCccccc-----------------chHH
Q 009981 76 SPVFVKLPEDSTMIGGKVKRRKAM-AQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDW-----------------RGYF 137 (521)
Q Consensus 76 vpv~VMlPLd~v~~~~~v~~~~~~-~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydw-----------------s~Y~ 137 (521)
.-+|-+=.-. .+..+.+..-+.+ ++-|..||++||+.|.+-- +.|. +....| ..++
T Consensus 230 ~~IYE~Hvg~-~~~~~~~gty~~~~~~~L~ylk~LG~t~I~LmP---i~e~--~~~~~wGY~~~~~fa~~~~~Gtp~dlk 303 (758)
T PLN02447 230 LRIYEAHVGM-SSEEPKVNSYREFADDVLPRIKALGYNAVQLMA---IQEH--AYYGSFGYHVTNFFAVSSRSGTPEDLK 303 (758)
T ss_pred CEEEEEeCCc-ccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECC---cccc--CCCCCCCcCcccCcccccccCCHHHHH
Confidence 3355544432 2333445555565 5669999999999998752 1221 111123 3489
Q ss_pred HHHHHHHHCCCcEEEEEee-ecc
Q 009981 138 DLIVLASNCGLKVRALLAF-HQC 159 (521)
Q Consensus 138 ~l~~mv~~~GLKv~~vlsf-HqC 159 (521)
++++.+.++||+|+.=+-+ |.+
T Consensus 304 ~LVd~aH~~GI~VilDvV~nH~~ 326 (758)
T PLN02447 304 YLIDKAHSLGLRVLMDVVHSHAS 326 (758)
T ss_pred HHHHHHHHCCCEEEEEecccccc
Confidence 9999999999999754433 443
No 194
>PRK14566 triosephosphate isomerase; Provisional
Probab=36.15 E-value=63 Score=33.44 Aligned_cols=44 Identities=20% Similarity=0.120 Sum_probs=36.4
Q ss_pred HHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHH----HHHHHHHCCCcEEEEEe
Q 009981 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFD----LIVLASNCGLKVRALLA 155 (521)
Q Consensus 102 dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~----l~~mv~~~GLKv~~vls 155 (521)
.-.+||++|+++|.|+- +|++=.|..-++ -++.+.++||+.+ +|
T Consensus 87 S~~mL~d~G~~~viiGH--------SERR~~f~Etd~~v~~Kv~~al~~gl~pI--vC 134 (260)
T PRK14566 87 SGQMLKDAGCRYVIIGH--------SERRRMYGETSNIVAEKFAAAQKHGLTPI--LC 134 (260)
T ss_pred CHHHHHHcCCCEEEECc--------ccccCCCCcCHHHHHHHHHHHHHCCCEEE--EE
Confidence 45789999999999985 477777888888 6778999999985 88
No 195
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=35.91 E-value=88 Score=34.60 Aligned_cols=48 Identities=15% Similarity=0.050 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCC-------cccccchHHHHHHHHHHCCCcEEE
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDRP-------GVYDWRGYFDLIVLASNCGLKVRA 152 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~p-------~~Ydws~Y~~l~~mv~~~GLKv~~ 152 (521)
++-|+.||++|+..|.+++ |...+ ...+.+...+.+++++++||++.+
T Consensus 287 ~ell~~l~~aG~~~v~iGi-----ES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~ 341 (497)
T TIGR02026 287 ADILHLYRRAGLVHISLGT-----EAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEA 341 (497)
T ss_pred HHHHHHHHHhCCcEEEEcc-----ccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 3567899999999999874 44322 346788899999999999998764
No 196
>PLN02540 methylenetetrahydrofolate reductase
Probab=34.43 E-value=78 Score=36.26 Aligned_cols=74 Identities=12% Similarity=0.219 Sum_probs=49.1
Q ss_pred HHHHHHHHHHH---HcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCC--C---CCCCCc
Q 009981 97 KAMAQSFKALA---AAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGS--G---PGDPKW 168 (521)
Q Consensus 97 ~~~~~dL~~LK---~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGG--N---VGDt~~ 168 (521)
..++.||..|| +||.+.+..-- -||-+.|.+.+++++++|+++-+|.+.--+.. + .-.-|.
T Consensus 153 ~~~~~dl~~Lk~KvdAGAdFiITQl-----------fFD~d~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~G 221 (565)
T PLN02540 153 EAYQKDLAYLKEKVDAGADLIITQL-----------FYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCK 221 (565)
T ss_pred CChHHHHHHHHHHHHcCCCEEeecc-----------ccCHHHHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccC
Confidence 44667888887 49999887533 48999999999999999966533322111110 0 000245
Q ss_pred cccChhhhhhhcc
Q 009981 169 VPLPQWVLEEIDK 181 (521)
Q Consensus 169 ipLP~WV~~~~~k 181 (521)
|.+|.|+.+..++
T Consensus 222 i~IP~~i~~rLe~ 234 (565)
T PLN02540 222 TKIPAEITAALEP 234 (565)
T ss_pred CcCCHHHHHHHHh
Confidence 8899999996543
No 197
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=34.02 E-value=71 Score=33.98 Aligned_cols=64 Identities=22% Similarity=0.222 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHcCCceEEEeee-eeeeecCCCcccccchHHH----HHH-HHHHCCCcEEEEEeeeccCCCCCCC
Q 009981 97 KAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGYFD----LIV-LASNCGLKVRALLAFHQCGSGPGDP 166 (521)
Q Consensus 97 ~~~~~dL~~LK~aGVdgV~vdVw-WG~VE~~~p~~Ydws~Y~~----l~~-mv~~~GLKv~~vlsfHqCGGNVGDt 166 (521)
.++.+.++.|+.+||..|-+|+= |+.-.+... |.-|.+ .++ .++..|-+++ ..+|-|.|+..++
T Consensus 158 ~al~~ev~~l~~agi~~iQiDEpal~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~d~~--i~~HiCy~e~~~~ 227 (330)
T COG0620 158 LALRDEVKDLEDAGIKIIQIDEPALREGLPLRR----DDDYLEWAVEAINLAAAGVGADTQ--IHLHICYSEFNDI 227 (330)
T ss_pred HHHHHHHHHHHHcCCCEEeechhhhhcCCcccc----chHHHHHHHHHHHHHHhcCCCCcE--EEEEEECCcccch
Confidence 45667778999999999999995 887765422 123322 222 2334577787 8899999977654
No 198
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=33.92 E-value=80 Score=31.45 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=35.1
Q ss_pred HHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEee
Q 009981 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAF 156 (521)
Q Consensus 102 dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsf 156 (521)
...+||++|+++|.|+- +|++|.=+--.+-++.+.++||+.+ +|.
T Consensus 73 S~~mLkd~G~~~viiGH--------SERRf~Etdi~~Kv~~a~~~gl~~I--vCi 117 (205)
T TIGR00419 73 SAEMLKDIGAKGTLINH--------SERRMKLADIEKKIARLKELGLTSV--VCT 117 (205)
T ss_pred CHHHHHHcCCCEEEECc--------ccCCCCccHHHHHHHHHHHCCCEEE--EEE
Confidence 46789999999999985 4666665656667778899999975 773
No 199
>PLN02899 alpha-galactosidase
Probab=33.90 E-value=56 Score=37.79 Aligned_cols=54 Identities=26% Similarity=0.340 Sum_probs=39.0
Q ss_pred HHHHcCCceEEEeeeeeeeecC-------------CCcccc-----cc------hHHHHHHHHHHCCCcEEEEEeeeccC
Q 009981 105 ALAAAGVEGVVVEVWWGVVERD-------------RPGVYD-----WR------GYFDLIVLASNCGLKVRALLAFHQCG 160 (521)
Q Consensus 105 ~LK~aGVdgV~vdVwWG~VE~~-------------~p~~Yd-----ws------~Y~~l~~mv~~~GLKv~~vlsfHqCG 160 (521)
-||.+|=+-|.||.-|..-+.. ..|+.- |- |.+.|++.|...||| +..|.+-
T Consensus 60 GLk~~GY~YVnIDDcW~~~~~~g~~~~s~g~~~~D~~GrLvPDp~RFPSs~~g~GmK~LADYVHskGLK----FGIY~~~ 135 (633)
T PLN02899 60 RLLPFGYEYVVVDYLWYRKKVEGAYVDSLGFDVIDEWGRPIPDPGRWPSSRGGKGFTEVAEKVHAMGLK----FGIHVMR 135 (633)
T ss_pred chHhhCCeEEEEccccccccccccccccccccccCCCCCCccCcccCCCCccCCCcHHHHHHHHhCCcc----eEEEecC
Confidence 5889999999999998643211 112222 22 899999999999999 4667666
Q ss_pred CC
Q 009981 161 SG 162 (521)
Q Consensus 161 GN 162 (521)
|.
T Consensus 136 Gi 137 (633)
T PLN02899 136 GI 137 (633)
T ss_pred CC
Confidence 64
No 200
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=33.76 E-value=1.4e+02 Score=23.38 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEE
Q 009981 99 MAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRA 152 (521)
Q Consensus 99 ~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~ 152 (521)
.++-++.+|+.|++.|-+-.- . +..++.++.+.+++.||++++
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh------~-----~~~~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDH------G-----NLFGAVEFYKAAKKAGIKPII 59 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeC------C-----cccCHHHHHHHHHHcCCeEEE
Confidence 567788999999999976432 2 677788899999999999863
No 201
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=33.46 E-value=56 Score=38.40 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHcCCceEEEeee-eeeeecCCCcccccchH-HHHHHHHHHC--CC--cEEEEEeeeccCCCCCCCCccc
Q 009981 97 KAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGY-FDLIVLASNC--GL--KVRALLAFHQCGSGPGDPKWVP 170 (521)
Q Consensus 97 ~~~~~dL~~LK~aGVdgV~vdVw-WG~VE~~~p~~Ydws~Y-~~l~~mv~~~--GL--Kv~~vlsfHqCGGNVGDt~~ip 170 (521)
.++.+.++.|.++|+..|-||+= |..--+. ..=+|..| +...+.++.+ |+ .++ +.+|-|-||.+|
T Consensus 575 ~a~~~ev~~L~~aG~~~IQIDEPaL~~~l~~--~~~~~~~~l~~a~~~~~~~~~~v~~~~~--I~~H~C~g~~~~----- 645 (750)
T TIGR01371 575 LAIRDEVLDLEEAGIKIIQIDEPALREGLPL--RKSDWPEYLDWAVEAFRLATSGVKDETQ--IHTHMCYSEFNE----- 645 (750)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCchhhhcCCc--cchhHHHHHHHHHHHHHHHHhCCCCCCE--EEEEEECCCcHH-----
Confidence 35677889999999999999998 7432221 11245444 3444555442 55 355 689999998762
Q ss_pred cChhhhhhhccCCCeeeeC
Q 009981 171 LPQWVLEEIDKDPDLAYSD 189 (521)
Q Consensus 171 LP~WV~~~~~k~PDI~~tD 189 (521)
+=.++.+ .+-|.+..|
T Consensus 646 i~~~l~~---l~vD~i~lE 661 (750)
T TIGR01371 646 IIESIAD---LDADVISIE 661 (750)
T ss_pred HHHHHHh---CCCCEEEEE
Confidence 1133433 566777766
No 202
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=33.24 E-value=2.1e+02 Score=31.40 Aligned_cols=41 Identities=27% Similarity=0.482 Sum_probs=26.1
Q ss_pred CCccccc---chHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccChhhhhhhc
Q 009981 127 RPGVYDW---RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEID 180 (521)
Q Consensus 127 ~p~~Ydw---s~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~WV~~~~~ 180 (521)
.++.||| .+-+.+++.+++.|.... ++| . -++|.||..-|.
T Consensus 94 ~dg~yDW~~D~gQrwfL~~Ak~rGV~~f--~aF----------S-NSPP~~MT~NG~ 137 (384)
T PF14587_consen 94 ADGSYDWDADAGQRWFLKAAKERGVNIF--EAF----------S-NSPPWWMTKNGS 137 (384)
T ss_dssp TTS-B-TTSSHHHHHHHHHHHHTT---E--EEE------------SSS-GGGSSSSS
T ss_pred CCCCcCCCCCHHHHHHHHHHHHcCCCeE--EEe----------e-cCCCHHHhcCCC
Confidence 4899999 567778999999999986 565 2 356999988443
No 203
>PRK12568 glycogen branching enzyme; Provisional
Probab=33.17 E-value=1.1e+02 Score=36.22 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=40.3
Q ss_pred ecCHHHHHHH-HHHHHHcCCceEEEeeeeeeeecCCCccccc-----------------chHHHHHHHHHHCCCcEEEEE
Q 009981 93 VKRRKAMAQS-FKALAAAGVEGVVVEVWWGVVERDRPGVYDW-----------------RGYFDLIVLASNCGLKVRALL 154 (521)
Q Consensus 93 v~~~~~~~~d-L~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydw-----------------s~Y~~l~~mv~~~GLKv~~vl 154 (521)
.-+.+.+.+. |..||++||+.|.+--- .|- |....| ..++++++.+.++||+|+.=+
T Consensus 265 ~~~~~~la~~ll~ylk~LGvt~I~LmPi---~e~--~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~ 339 (730)
T PRK12568 265 PLDWPTLAEQLIPYVQQLGFTHIELLPI---TEH--PFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDW 339 (730)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECcc---ccC--CCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3456677776 59999999999976421 121 111222 358999999999999997444
Q ss_pred ee
Q 009981 155 AF 156 (521)
Q Consensus 155 sf 156 (521)
-+
T Consensus 340 V~ 341 (730)
T PRK12568 340 VS 341 (730)
T ss_pred cc
Confidence 43
No 204
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=32.90 E-value=1.2e+02 Score=31.98 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCC-------cccccchHHHHHHHHHHCCCc
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDRP-------GVYDWRGYFDLIVLASNCGLK 149 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~p-------~~Ydws~Y~~l~~mv~~~GLK 149 (521)
++.|+.||++||+.|.|+| |.-.| ...+++-+.+.+++++++|++
T Consensus 100 ~e~l~~l~~~Gv~risiGv-----qS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~ 151 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGV-----QSFRDDKLLFLGRQHSAKNIAPAIETALKSGIE 151 (360)
T ss_pred HHHHHHHHHcCCCEEEEec-----ccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCC
Confidence 4678999999999999986 32222 347889999999999999997
No 205
>PF04187 DUF399: Protein of unknown function, DUF399; InterPro: IPR007314 No function is known for any member of this family.; PDB: 2G5G_X.
Probab=32.66 E-value=36 Score=33.67 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=16.4
Q ss_pred cccchHHHHHHHHHHCCCcEE
Q 009981 131 YDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 131 Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
|+|+.|..|++.++++||+|+
T Consensus 86 ~~~~~Y~pl~~~Ar~~~ipvi 106 (213)
T PF04187_consen 86 NDWALYRPLVEFARENGIPVI 106 (213)
T ss_dssp --GGGTHHHHHHHHTSS--EE
T ss_pred CchHHHHHHHHHHHHCCCCEE
Confidence 589999999999999999985
No 206
>PRK14565 triosephosphate isomerase; Provisional
Probab=32.63 E-value=80 Score=32.22 Aligned_cols=44 Identities=20% Similarity=0.092 Sum_probs=36.5
Q ss_pred HHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHH----HHHHHCCCcEEEEEe
Q 009981 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLI----VLASNCGLKVRALLA 155 (521)
Q Consensus 102 dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~----~mv~~~GLKv~~vls 155 (521)
...+||++|++.|.|+- +|++=.|..=++++ +.+.++||+.+ +|
T Consensus 77 S~~mLkd~G~~~viiGH--------SERR~~f~Etd~~V~~Kv~~al~~gl~pI--vC 124 (237)
T PRK14565 77 SAKMLKECGCSYVILGH--------SERRSTFHETDSDIRLKAESAIESGLIPI--IC 124 (237)
T ss_pred CHHHHHHcCCCEEEECc--------ccccCcCCcCHHHHHHHHHHHHHCCCEEE--EE
Confidence 46789999999999985 46666777778888 78899999975 87
No 207
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=32.59 E-value=52 Score=34.77 Aligned_cols=60 Identities=27% Similarity=0.171 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHcCCceEEEeee-eeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCC
Q 009981 97 KAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPG 164 (521)
Q Consensus 97 ~~~~~dL~~LK~aGVdgV~vdVw-WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVG 164 (521)
+++.+.++.|.++|+..|-+|+= |+..=.+ .=+.|-++++.+-+ |+... .+.|-|-||-+
T Consensus 156 ~al~~Ei~~L~~aG~~~IQiDeP~l~~~~~~-----~~~~~v~~~n~~~~-g~~~~--v~~HvC~G~~~ 216 (339)
T PRK09121 156 KILNQEAKELEAAGVDIIQFDEPAFNVFFDE-----VNDWGVAALERAIE-GLKCE--TAVHICYGYGI 216 (339)
T ss_pred HHHHHHHHHHHHCCCCEEEecccHHhhhhHH-----HHHHHHHHHHHHHc-CCCCc--eEEEEeCCCCC
Confidence 35677888999999999999988 8742100 14556666666654 67755 55699988864
No 208
>PRK06233 hypothetical protein; Provisional
Probab=32.41 E-value=77 Score=33.91 Aligned_cols=67 Identities=13% Similarity=0.199 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHcCCceEEEeee-eeee-ecCC---CcccccchHHH-------HHHHHHHCCCcEEEEEeeeccCCCCC
Q 009981 97 KAMAQSFKALAAAGVEGVVVEVW-WGVV-ERDR---PGVYDWRGYFD-------LIVLASNCGLKVRALLAFHQCGSGPG 164 (521)
Q Consensus 97 ~~~~~dL~~LK~aGVdgV~vdVw-WG~V-E~~~---p~~Ydws~Y~~-------l~~mv~~~GLKv~~vlsfHqCGGNVG 164 (521)
+++++.+++|.++|+..|-+|.= |+.. +... +.--.+..+.+ +++.+-+ |+.--..+++|-|-||-.
T Consensus 171 ~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~-~~p~d~~i~~H~C~Gn~~ 249 (372)
T PRK06233 171 QAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKALA-DLPEDLTVTTHICRGNFK 249 (372)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHHh-CCCcCCEEEEEeeCCCCC
Confidence 46777788999999999999997 8742 2110 11002333333 3322222 552222379999998874
No 209
>PRK06988 putative formyltransferase; Provisional
Probab=32.26 E-value=1.6e+02 Score=30.80 Aligned_cols=96 Identities=23% Similarity=0.323 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccChhhhhhh
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEI 179 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~WV~~~~ 179 (521)
..-|++|-+.|++.+-| +..++.|.. =..+..+.+.++++||.+. . ...+.-+.++...-
T Consensus 15 ~~~L~~L~~~~~~i~~V-----vt~~d~~~~--~~~~~~v~~~A~~~gip~~---~----------~~~~~~~~~~~~l~ 74 (312)
T PRK06988 15 VRCLQVLLARGVDVALV-----VTHEDNPTE--NIWFGSVAAVAAEHGIPVI---T----------PADPNDPELRAAVA 74 (312)
T ss_pred HHHHHHHHhCCCCEEEE-----EcCCCCCcc--CcCCCHHHHHHHHcCCcEE---c----------cccCCCHHHHHHHH
Confidence 34677777778775543 334433432 1234578889999999985 1 01233355554444
Q ss_pred ccCCCeeeeCCCCcc---------cccccccccCcccccCCCCch
Q 009981 180 DKDPDLAYSDRFGRR---------NMEYISLGCDILPVLRGRSPI 215 (521)
Q Consensus 180 ~k~PDI~~tD~~G~r---------~~EclSlg~D~~pv~~GRTpi 215 (521)
+..||++++=..|+. ..-|+++-.=-||-++|..|+
T Consensus 75 ~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpslLP~yRG~~pi 119 (312)
T PRK06988 75 AAAPDFIFSFYYRHMIPVDLLALAPRGAYNMHGSLLPKYRGRVPV 119 (312)
T ss_pred hcCCCEEEEehhccccCHHHHhcCCCCEEEeeCccccCCCCcCHH
Confidence 478999988887776 345777777778888888843
No 210
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=32.08 E-value=1.2e+02 Score=29.24 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=43.6
Q ss_pred CCCcceEEeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCccc------ccchHHHHHHHHHHC
Q 009981 73 RNGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVY------DWRGYFDLIVLASNC 146 (521)
Q Consensus 73 ~~~vpv~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Y------dws~Y~~l~~mv~~~ 146 (521)
....|+.+-+-- ++++.+.+..+.++++|+|+|.|..---..... .+.| +.....++++.+++.
T Consensus 52 ~~~~p~~~qi~g---------~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~-~~~~G~~l~~~~~~~~eii~~v~~~ 121 (231)
T cd02801 52 PEERPLIVQLGG---------SDPETLAEAAKIVEELGADGIDLNMGCPSPKVT-KGGAGAALLKDPELVAEIVRAVREA 121 (231)
T ss_pred ccCCCEEEEEcC---------CCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHh-CCCeeehhcCCHHHHHHHHHHHHHh
Confidence 345666554432 578999999999999999999998752111111 1223 677788888888764
No 211
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=31.93 E-value=1.1e+02 Score=30.20 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeee
Q 009981 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFH 157 (521)
Q Consensus 95 ~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfH 157 (521)
+.++++++++.||+ ++|.|-+-.=||.=....| -..-+++++.+-+.|..++ ++-|
T Consensus 158 ~~~~i~~~i~~lr~-~~D~vIv~~H~G~e~~~~p----~~~~~~~A~~l~~~G~DvI--iG~H 213 (239)
T smart00854 158 DREKILADIARARK-KADVVIVSLHWGVEYQYEP----TDEQRELAHALIDAGADVV--IGHH 213 (239)
T ss_pred CHHHHHHHHHHHhc-cCCEEEEEecCccccCCCC----CHHHHHHHHHHHHcCCCEE--EcCC
Confidence 46889999999998 7999988888997322222 2233677777777999885 7866
No 212
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=31.87 E-value=79 Score=34.12 Aligned_cols=82 Identities=17% Similarity=0.158 Sum_probs=56.8
Q ss_pred eEEeeecceec---CCCe-----------ecCHHHHHH-----------HHHHHHHcCCceEEEeeeee-eeecCCCccc
Q 009981 78 VFVKLPEDSTM---IGGK-----------VKRRKAMAQ-----------SFKALAAAGVEGVVVEVWWG-VVERDRPGVY 131 (521)
Q Consensus 78 v~VMlPLd~v~---~~~~-----------v~~~~~~~~-----------dL~~LK~aGVdgV~vdVwWG-~VE~~~p~~Y 131 (521)
.|.+.|..+-+ .++. +.+|+.|.+ -|+++-++|+|.|.|---|+ .+......+|
T Consensus 145 gf~gsP~TlAsymieg~~s~~~~~~k~~m~~~P~~~~~ll~kltd~~i~Yl~~qi~aGAdavqifDsW~g~l~~~~~~~f 224 (352)
T COG0407 145 GFAGSPWTLASYLIEGGGSKDFSKTKAMMYTEPDAVHALLDKLTDAVIEYLKAQIEAGADAVQIFDSWAGVLSMIDYDEF 224 (352)
T ss_pred EecCCHHHHHHHHHcCCCcccHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeccccccCCcccHHHH
Confidence 47788886544 1111 246665554 45666789999999988775 4444558899
Q ss_pred ccchHHHHHHHHHHCCCcEEEEEeeeccCCC
Q 009981 132 DWRGYFDLIVLASNCGLKVRALLAFHQCGSG 162 (521)
Q Consensus 132 dws~Y~~l~~mv~~~GLKv~~vlsfHqCGGN 162 (521)
...+-.++++-+++.+-+ .||+ |-|+|.
T Consensus 225 ~~~~~~~i~~~vk~~~~~-~pii--~f~~ga 252 (352)
T COG0407 225 VLPYMKRIVREVKEVKGG-VPVI--HFCKGA 252 (352)
T ss_pred hhhHHHHHHHHHHHhCCC-CcEE--EECCCc
Confidence 999999999999987776 3344 447754
No 213
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=31.84 E-value=1.1e+02 Score=27.25 Aligned_cols=46 Identities=26% Similarity=0.342 Sum_probs=33.1
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
.+.+++...+-++.++++|+.+|-+- ++ +.=.++.+.++++||+++
T Consensus 61 v~~~~~~~~~~v~~~~~~g~~~v~~~----------~g----~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 61 VCVPPDKVPEIVDEAAALGVKAVWLQ----------PG----AESEELIEAAREAGIRVI 106 (116)
T ss_dssp E-S-HHHHHHHHHHHHHHT-SEEEE-----------TT----S--HHHHHHHHHTT-EEE
T ss_pred EEcCHHHHHHHHHHHHHcCCCEEEEE----------cc----hHHHHHHHHHHHcCCEEE
Confidence 36789999999999999999887553 22 566899999999999984
No 214
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=31.79 E-value=1e+02 Score=30.75 Aligned_cols=56 Identities=21% Similarity=0.275 Sum_probs=39.3
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCccccc-chHHHHHHHHHHCCCcEEEEEeeec
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDW-RGYFDLIVLASNCGLKVRALLAFHQ 158 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydw-s~Y~~l~~mv~~~GLKv~~vlsfHq 158 (521)
.+.+.+.....|+.++++||..| |++- . . ++ ...+.+.+++++.|+.+.+.+++|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~Gvtti-v~~~--~-----~---~~~~~~~~~~~~~~~~g~~v~~~~G~hp 83 (293)
T cd00530 27 DLADVEAAKEELKRFRAHGGRTI-VDAT--P-----P---GIGRDVEKLAEVARATGVNIVAATGFYK 83 (293)
T ss_pred chhhHHHHHHHHHHHHHcCCCeE-EEcC--C-----c---ccCcCHHHHHHHHHHhCCcEEEecccCC
Confidence 34566788889999999999877 2221 1 1 11 1236778888899999988888774
No 215
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=31.63 E-value=12 Score=39.02 Aligned_cols=30 Identities=17% Similarity=0.427 Sum_probs=26.9
Q ss_pred eeeEecCCccccCCc-ChHHHHHHHHHhhCC
Q 009981 461 SFNFLRMDKNMFEYH-NWVRFTRFVRQLSGS 490 (521)
Q Consensus 461 ~FTylRm~~~lf~~~-n~~~F~~FVr~m~~~ 490 (521)
=||++|||..|+.|. ++..+..|+|.|...
T Consensus 97 PfTiqRlcEl~~~P~~~y~~~~k~~~alek~ 127 (288)
T PF09184_consen 97 PFTIQRLCELLLDPRKHYKTLDKFLRALEKV 127 (288)
T ss_pred ChhHHHHHHHHhChhhccccHHHHHHHHhee
Confidence 599999999999986 699999999998765
No 216
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=31.43 E-value=3.8e+02 Score=29.62 Aligned_cols=62 Identities=15% Similarity=0.320 Sum_probs=45.5
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEeee----eeee--------e--------------------------cCCCccccc
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEVW----WGVV--------E--------------------------RDRPGVYDW 133 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdVw----WG~V--------E--------------------------~~~p~~Ydw 133 (521)
.+-+.+.+++-|..|....+|...+-.- |-+- | ....|.|.=
T Consensus 17 ~f~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~ 96 (445)
T cd06569 17 NFHSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSR 96 (445)
T ss_pred CCCCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCH
Confidence 3568899999999999999887765431 3210 0 112456888
Q ss_pred chHHHHHHHHHHCCCcEEEE
Q 009981 134 RGYFDLIVLASNCGLKVRAL 153 (521)
Q Consensus 134 s~Y~~l~~mv~~~GLKv~~v 153 (521)
+-+++|++.+++.|+.|+|=
T Consensus 97 ~di~eiv~yA~~rgI~VIPE 116 (445)
T cd06569 97 ADYIEILKYAKARHIEVIPE 116 (445)
T ss_pred HHHHHHHHHHHHcCCEEEEc
Confidence 88999999999999999843
No 217
>PLN02429 triosephosphate isomerase
Probab=31.38 E-value=83 Score=33.53 Aligned_cols=44 Identities=20% Similarity=0.055 Sum_probs=37.2
Q ss_pred HHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHH----HHHCCCcEEEEEe
Q 009981 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVL----ASNCGLKVRALLA 155 (521)
Q Consensus 102 dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~m----v~~~GLKv~~vls 155 (521)
.-.+||++||..|.|+- +|.+=.|..=++++.. +.++||+.+ +|
T Consensus 139 Sa~mLkd~Gv~~ViiGH--------SERR~~f~Etd~~V~~Kv~~al~~GL~pI--vC 186 (315)
T PLN02429 139 SVEQLKDLGCKWVILGH--------SERRHVIGEKDEFIGKKAAYALSEGLGVI--AC 186 (315)
T ss_pred CHHHHHHcCCCEEEeCc--------cccCCCCCcCHHHHHHHHHHHHHCcCEEE--EE
Confidence 46789999999999985 4666678888999988 999999985 77
No 218
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=30.70 E-value=95 Score=33.13 Aligned_cols=47 Identities=21% Similarity=0.360 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCC----------cccccchHHHHHHHHHHCCCc-EE
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDRP----------GVYDWRGYFDLIVLASNCGLK-VR 151 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~p----------~~Ydws~Y~~l~~mv~~~GLK-v~ 151 (521)
.++++.||++||++|++.. |.-.+ ...+|+.-.+.++.++++|++ |.
T Consensus 163 ~e~l~~Lk~aGv~r~~i~l-----ET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~ 220 (371)
T PRK09240 163 EEEYAELVELGLDGVTVYQ-----ETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIG 220 (371)
T ss_pred HHHHHHHHHcCCCEEEEEE-----ecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeec
Confidence 6678999999999999763 33212 245677777889999999996 63
No 219
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=29.70 E-value=1.1e+02 Score=30.46 Aligned_cols=46 Identities=11% Similarity=0.062 Sum_probs=38.2
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCccc--ccchHHHHHHHHHHCC
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVY--DWRGYFDLIVLASNCG 147 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Y--dws~Y~~l~~mv~~~G 147 (521)
-|+..++++|+.|+++|++.+.+|+= +|+| |.+.=-+.++.+++.+
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~Dim--------Dg~fvpn~~~G~~~v~~lr~~~ 63 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVM--------DGHFVPNLSFGPPVVKSLRKHL 63 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecc--------cCccCCCcCcCHHHHHHHHhcC
Confidence 47789999999999999999999985 6777 5666677788887775
No 220
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=29.70 E-value=75 Score=31.07 Aligned_cols=55 Identities=20% Similarity=0.175 Sum_probs=43.6
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEE
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRA 152 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~ 152 (521)
.+...+..+++...++|+++|.+-..++.. +..+......++.+.+++.|+++++
T Consensus 73 ~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~----~~~~~~~~i~~v~~~~~~~g~~~ii 127 (235)
T cd00958 73 DNDKVLVASVEDAVRLGADAVGVTVYVGSE----EEREMLEELARVAAEAHKYGLPLIA 127 (235)
T ss_pred CCchhhhcCHHHHHHCCCCEEEEEEecCCc----hHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 445667778899999999999888887743 2356777888899999999999873
No 221
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=29.29 E-value=2.1e+02 Score=29.11 Aligned_cols=103 Identities=18% Similarity=0.164 Sum_probs=61.1
Q ss_pred HHHHHHHHcCCceEEEeee---eeeeec-CCCcccccchHHHHHHHHHHCCCcEEE-EEeeeccCCCCCCCCccccChhh
Q 009981 101 QSFKALAAAGVEGVVVEVW---WGVVER-DRPGVYDWRGYFDLIVLASNCGLKVRA-LLAFHQCGSGPGDPKWVPLPQWV 175 (521)
Q Consensus 101 ~dL~~LK~aGVdgV~vdVw---WG~VE~-~~p~~Ydws~Y~~l~~mv~~~GLKv~~-vlsfHqCGGNVGDt~~ipLP~WV 175 (521)
.++++++++|++.|++-+= +-+-+. ....+..+....++++++++.|++|++ .++| -|.. ..-|..+
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~-------~d~~-~~~~~~~ 153 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF-------FDGY-KANPEYA 153 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec-------cccC-CCCHHHH
Confidence 5688899999999887432 101111 012245678899999999999999876 2333 1222 2347777
Q ss_pred hhhhcc----CC-CeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHh
Q 009981 176 LEEIDK----DP-DLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFR 230 (521)
Q Consensus 176 ~~~~~k----~P-DI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa 230 (521)
.+..++ -+ .|.+.|-.|. -+|.+ ..++.+.+++++.
T Consensus 154 ~~~~~~~~~~g~~~i~l~DT~G~------------------~~P~~-v~~lv~~l~~~~~ 194 (273)
T cd07941 154 LATLKAAAEAGADWLVLCDTNGG------------------TLPHE-IAEIVKEVRERLP 194 (273)
T ss_pred HHHHHHHHhCCCCEEEEecCCCC------------------CCHHH-HHHHHHHHHHhCC
Confidence 664321 12 3555666663 24744 4556667776653
No 222
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=29.19 E-value=1.3e+02 Score=34.60 Aligned_cols=72 Identities=10% Similarity=0.038 Sum_probs=50.9
Q ss_pred CCCcceEEeeec-ceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 73 RNGSPVFVKLPE-DSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 73 ~~~vpv~VMlPL-d~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
.+.+|+-.+++= ..|.- .--+.+.++.++++.+++||+.|+|-.-...+ .-....++.++++|++++
T Consensus 74 ~~~~~lqml~Rg~n~vg~--~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~----------~~~~~ai~~ak~~G~~~~ 141 (593)
T PRK14040 74 MPNTPQQMLLRGQNLLGY--RHYADDVVERFVERAVKNGMDVFRVFDAMNDP----------RNLETALKAVRKVGAHAQ 141 (593)
T ss_pred CCCCeEEEEecCcceecc--ccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH----------HHHHHHHHHHHHcCCeEE
Confidence 456777666651 11210 01245689999999999999999987543332 457789999999999998
Q ss_pred EEEee
Q 009981 152 ALLAF 156 (521)
Q Consensus 152 ~vlsf 156 (521)
+.+|+
T Consensus 142 ~~i~y 146 (593)
T PRK14040 142 GTLSY 146 (593)
T ss_pred EEEEE
Confidence 87775
No 223
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=28.89 E-value=1.3e+02 Score=31.65 Aligned_cols=45 Identities=16% Similarity=0.321 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCC-------CcccccchHHHHHHHHHHCCCc
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDR-------PGVYDWRGYFDLIVLASNCGLK 149 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~-------p~~Ydws~Y~~l~~mv~~~GLK 149 (521)
++.|+.||++||+.|.|++ |.-. ...+++.-+.+.+++++++|++
T Consensus 99 ~e~l~~l~~~G~~rvsiGv-----qS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~ 150 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGL-----QAWQNSLLKYLGRIHTFEEFLENYKLARKLGFN 150 (374)
T ss_pred HHHHHHHHHcCCCEEEEEC-----ccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 3579999999999999998 4332 2345788899999999999997
No 224
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=28.85 E-value=91 Score=29.95 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCC
Q 009981 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCG 147 (521)
Q Consensus 95 ~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~G 147 (521)
|++++++.++.+|..||+.|-|--=|+.+-|+ .=+++.+++++.|
T Consensus 132 d~~~v~~~~~~l~~~gv~avAV~~~fS~~np~--------hE~~v~eii~e~g 176 (176)
T PF05378_consen 132 DEDEVREALRELKDKGVEAVAVSLLFSYRNPE--------HEQRVAEIIREEG 176 (176)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECccCCCCHH--------HHHHHHHHHHhcC
Confidence 68999999999999999999998878887765 2356777777765
No 225
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=28.85 E-value=1.7e+02 Score=31.00 Aligned_cols=62 Identities=18% Similarity=0.261 Sum_probs=41.2
Q ss_pred ecCHHHHHHHHHHHHHcCC--ceEEEeee--------eee---eecCCC-----ccccc------chHHHHHHHHHHCCC
Q 009981 93 VKRRKAMAQSFKALAAAGV--EGVVVEVW--------WGV---VERDRP-----GVYDW------RGYFDLIVLASNCGL 148 (521)
Q Consensus 93 v~~~~~~~~dL~~LK~aGV--dgV~vdVw--------WG~---VE~~~p-----~~Ydw------s~Y~~l~~mv~~~GL 148 (521)
-.+.+.+.+-++.+++.|| ++|.||.| |.. ++..+- +.++| --.+++++.+++.|+
T Consensus 20 Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~ 99 (340)
T cd06597 20 WDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGV 99 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCC
Confidence 4577889999999999885 88888842 111 111111 11222 347899999999999
Q ss_pred cEEEEE
Q 009981 149 KVRALL 154 (521)
Q Consensus 149 Kv~~vl 154 (521)
|++.++
T Consensus 100 kv~l~v 105 (340)
T cd06597 100 KVLLWQ 105 (340)
T ss_pred EEEEEe
Confidence 997433
No 226
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=28.68 E-value=1.6e+02 Score=30.23 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=42.0
Q ss_pred cCHHHHHHHHHHHHHcC--CceEEEeeeeeee-ec----CCCccccc-----chHHHHHHHHHHCCCcEEEEE
Q 009981 94 KRRKAMAQSFKALAAAG--VEGVVVEVWWGVV-ER----DRPGVYDW-----RGYFDLIVLASNCGLKVRALL 154 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aG--VdgV~vdVwWG~V-E~----~~p~~Ydw-----s~Y~~l~~mv~~~GLKv~~vl 154 (521)
.+.+.+.+=++.+++.| +|+|.+|.=|..- ++ .+=+.|.| --.+++++-+++.|+|+++++
T Consensus 22 ~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 22 YSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEe
Confidence 46678888899998866 5889998844321 10 11233444 467899999999999997444
No 227
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=28.43 E-value=86 Score=36.54 Aligned_cols=64 Identities=19% Similarity=0.311 Sum_probs=40.7
Q ss_pred HHHHH--HHHHHHHcCCceEEEe-ee----------------eeeeec---CCCccc----ccchHHHHHHHHHHCCCcE
Q 009981 97 KAMAQ--SFKALAAAGVEGVVVE-VW----------------WGVVER---DRPGVY----DWRGYFDLIVLASNCGLKV 150 (521)
Q Consensus 97 ~~~~~--dL~~LK~aGVdgV~vd-Vw----------------WG~VE~---~~p~~Y----dws~Y~~l~~mv~~~GLKv 150 (521)
..+.+ -|..||++||+.|.+- |+ ||.-=. .-+..| .-..++++++.++++||+|
T Consensus 182 ~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~V 261 (688)
T TIGR02100 182 AGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEV 261 (688)
T ss_pred HHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEE
Confidence 34443 4999999999999763 22 442100 001222 2346999999999999999
Q ss_pred EEEEee-eccC
Q 009981 151 RALLAF-HQCG 160 (521)
Q Consensus 151 ~~vlsf-HqCG 160 (521)
+.=+-| |-+.
T Consensus 262 IlDvV~NHt~~ 272 (688)
T TIGR02100 262 ILDVVYNHTAE 272 (688)
T ss_pred EEEECcCCccC
Confidence 865555 4443
No 228
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=28.42 E-value=2.4e+02 Score=28.49 Aligned_cols=69 Identities=23% Similarity=0.437 Sum_probs=44.2
Q ss_pred CcceEEeeecceecCCCeec-CHHHHHHHHHHHHHcC-CceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEE
Q 009981 75 GSPVFVKLPEDSTMIGGKVK-RRKAMAQSFKALAAAG-VEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRA 152 (521)
Q Consensus 75 ~vpv~VMlPLd~v~~~~~v~-~~~~~~~dL~~LK~aG-VdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~ 152 (521)
..|+-++.= ....+|... +++...+=|+.+-.+| ++.|.|+..++ =...+++++.+++.|.||+
T Consensus 74 ~~PiI~T~R--~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~-----------~~~~~~l~~~~~~~~~kvI- 139 (253)
T PRK02412 74 GKPLLFTFR--TAKEGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSG-----------KDVVKEMVAFAHEHGVKVV- 139 (253)
T ss_pred CCcEEEEEC--ChhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCC-----------hHHHHHHHHHHHHcCCEEE-
Confidence 355554432 344555543 3333333466666778 99999987542 1346788899999999985
Q ss_pred EEeeec
Q 009981 153 LLAFHQ 158 (521)
Q Consensus 153 vlsfHq 158 (521)
+|+|.
T Consensus 140 -~S~H~ 144 (253)
T PRK02412 140 -LSYHD 144 (253)
T ss_pred -EeeCC
Confidence 89993
No 229
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=28.33 E-value=2.1e+02 Score=32.15 Aligned_cols=70 Identities=17% Similarity=0.213 Sum_probs=54.1
Q ss_pred CeecCHHHHHHHHHHHHHcCCceEEEeee-eeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCcc
Q 009981 91 GKVKRRKAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWV 169 (521)
Q Consensus 91 ~~v~~~~~~~~dL~~LK~aGVdgV~vdVw-WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~i 169 (521)
-.+|+.+.++..++..|++|....-.-+. + +| +|+-++|.++++.+.+.|.+.+ + +-|+.-+
T Consensus 126 d~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~------sp-~~t~~y~~~~a~~l~~~Gad~I---~-------IkDtaG~ 188 (468)
T PRK12581 126 DALNDPRNIQQALRAVKKTGKEAQLCIAYTT------SP-VHTLNYYLSLVKELVEMGADSI---C-------IKDMAGI 188 (468)
T ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEEEEEEe------CC-cCcHHHHHHHHHHHHHcCCCEE---E-------ECCCCCC
Confidence 35789999999999999999875432222 2 24 7899999999999999999874 3 2478888
Q ss_pred ccChhhhh
Q 009981 170 PLPQWVLE 177 (521)
Q Consensus 170 pLP~WV~~ 177 (521)
..|.=+.+
T Consensus 189 l~P~~v~~ 196 (468)
T PRK12581 189 LTPKAAKE 196 (468)
T ss_pred cCHHHHHH
Confidence 88876555
No 230
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=28.23 E-value=1.3e+02 Score=32.86 Aligned_cols=49 Identities=14% Similarity=0.101 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCC-------CcccccchHHHHHHHHHHCCCcEEEE
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDR-------PGVYDWRGYFDLIVLASNCGLKVRAL 153 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~-------p~~Ydws~Y~~l~~mv~~~GLKv~~v 153 (521)
.+-|+.||++|+..|.+++ |.-. ....+.+.+.+.++.++++|+.+.+-
T Consensus 287 ~e~l~~l~~aG~~~v~iGi-----ES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~ 342 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGY-----ESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGT 342 (472)
T ss_pred HHHHHHHHHcCCCEEEEcC-----CCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 4568899999999988875 3322 12457778889999999999988643
No 231
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=28.13 E-value=1.2e+02 Score=29.58 Aligned_cols=50 Identities=18% Similarity=0.328 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 95 ~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
....+++-|+..+++|.+||.+.. +.... .+.+..+++-+.+++.||++.
T Consensus 13 ~~~~l~~~l~~~~~~G~~gvEi~~-~~~~~------~~~~~~~~l~~~l~~~gl~i~ 62 (274)
T COG1082 13 GELPLEEILRKAAELGFDGVELSP-GDLFP------ADYKELAELKELLADYGLEIT 62 (274)
T ss_pred CCCCHHHHHHHHHHhCCCeEecCC-cccCC------chhhhHHHHHHHHHHcCcEEE
Confidence 356788899999999999999987 22222 122238999999999999985
No 232
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=27.91 E-value=4.5e+02 Score=29.00 Aligned_cols=77 Identities=25% Similarity=0.506 Sum_probs=51.8
Q ss_pred CeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccc-----------cchHHHHHHHHHHCCCcEEEEEeeecc
Q 009981 91 GKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYD-----------WRGYFDLIVLASNCGLKVRALLAFHQC 159 (521)
Q Consensus 91 ~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Yd-----------ws~Y~~l~~mv~~~GLKv~~vlsfHqC 159 (521)
+.+=+.+.+++--+.+.++|.. |..||.- |=.-+ -+.|++.++-+-++|+|++ |.
T Consensus 37 gevW~~~~i~~~k~~ie~~GL~-------~~vvEs~-pv~e~Ik~g~~~rd~~Ienyk~~irNla~~GI~vi---cY--- 102 (394)
T TIGR00695 37 GEVWEKEEIRKRKEYIESAGLH-------WSVVESV-PVHEAIKTGTGNYGRWIENYKQTLRNLAQCGIKTV---CY--- 102 (394)
T ss_pred CCCCCHHHHHHHHHHHHHcCCe-------EEEEeCC-CccHHHHcCCCcHHHHHHHHHHHHHHHHHcCCCEE---EE---
Confidence 4567778888877888888843 7777764 32222 3678888889999999984 42
Q ss_pred CCCCCCCCccccChhhhhhhccCCCeeeeCCCCcc
Q 009981 160 GSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRR 194 (521)
Q Consensus 160 GGNVGDt~~ipLP~WV~~~~~k~PDI~~tD~~G~r 194 (521)
---|.-.|... |+.+.-+.|..
T Consensus 103 -------NFMPv~dW~RT------~l~~~~~~Ga~ 124 (394)
T TIGR00695 103 -------NFMPVLDWTRT------DLFYPLPDGSK 124 (394)
T ss_pred -------Eeccccccccc------cCcccCCCCce
Confidence 12455668765 55566667765
No 233
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=27.78 E-value=1.9e+02 Score=32.98 Aligned_cols=95 Identities=31% Similarity=0.392 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccChhhhhhh
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEI 179 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~WV~~~~ 179 (521)
..-|++|-+.|.+.|-| +..|+.|.. =..+..+.+.++++||.+... ..+.-|.|+...-
T Consensus 13 ~~~l~~L~~~~~~i~~V-----~t~pd~~~~--~~~~~~v~~~a~~~~ip~~~~-------------~~~~~~~~~~~l~ 72 (660)
T PRK08125 13 CVGIEALLAAGYEIAAV-----FTHTDNPGE--NHFFGSVARLAAELGIPVYAP-------------EDVNHPLWVERIR 72 (660)
T ss_pred HHHHHHHHHCCCcEEEE-----EeCCCCCcC--CCCcCHHHHHHHHcCCcEEee-------------CCCCcHHHHHHHH
Confidence 45577777778765532 123433322 244557888899999988521 2344566766555
Q ss_pred ccCCCeeeeCCCCcc---------cccccccccCcccccCCCCc
Q 009981 180 DKDPDLAYSDRFGRR---------NMEYISLGCDILPVLRGRSP 214 (521)
Q Consensus 180 ~k~PDI~~tD~~G~r---------~~EclSlg~D~~pv~~GRTp 214 (521)
+..||++++=..|+. ..-||++-.=-||-++|..|
T Consensus 73 ~~~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~slLP~yRG~~p 116 (660)
T PRK08125 73 ELAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGSLLPKYRGRAP 116 (660)
T ss_pred hcCCCEEEEccccccCCHHHHhhcCCCEEEEeCCcccCCCCcCH
Confidence 678998888777766 33467776677777777663
No 234
>PTZ00333 triosephosphate isomerase; Provisional
Probab=27.50 E-value=1.2e+02 Score=31.16 Aligned_cols=44 Identities=20% Similarity=0.116 Sum_probs=34.6
Q ss_pred HHHHHHHcCCceEEEeeeeeeeecCCCccccc----chHHHHHHHHHHCCCcEEEEEe
Q 009981 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYDW----RGYFDLIVLASNCGLKVRALLA 155 (521)
Q Consensus 102 dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydw----s~Y~~l~~mv~~~GLKv~~vls 155 (521)
.-.+||++|++.|.|+- +|++=.| +--.+-++.+.++||+.+ +|
T Consensus 81 S~~mL~d~G~~~viiGH--------SERR~~f~Etd~~I~~Kv~~al~~gl~pI--lC 128 (255)
T PTZ00333 81 SAEMLKDLGINWTILGH--------SERRQYFGETNEIVAQKVKNALENGLKVI--LC 128 (255)
T ss_pred CHHHHHHcCCCEEEECc--------ccccCcCCCCcHHHHHHHHHHHHCCCEEE--EE
Confidence 34789999999999985 4666667 556666678889999875 88
No 235
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=27.40 E-value=1.9e+02 Score=30.77 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCC---------CcccccchHHHHHHHHHHCCCc-EEEEEeeeccCCCCCCC
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDR---------PGVYDWRGYFDLIVLASNCGLK-VRALLAFHQCGSGPGDP 166 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~---------p~~Ydws~Y~~l~~mv~~~GLK-v~~vlsfHqCGGNVGDt 166 (521)
.+.|+.||++||+.|.|+| ++ .+.++.+.+.+.+++++++|++ |.+-|-+ |-.|.+
T Consensus 103 ~e~l~~lk~~G~nrisiGv-------QS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~----GlPgqt 168 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGV-------QSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLY----CLPILK 168 (353)
T ss_pred HHHHHHHHHcCCCEEEEec-------ccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEee----cCCCCC
No 236
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=27.25 E-value=1.5e+02 Score=29.31 Aligned_cols=59 Identities=22% Similarity=0.348 Sum_probs=39.6
Q ss_pred ecCCCeec-CHHHHHHHHHHH-HHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeec
Q 009981 87 TMIGGKVK-RRKAMAQSFKAL-AAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQ 158 (521)
Q Consensus 87 v~~~~~v~-~~~~~~~dL~~L-K~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHq 158 (521)
...+|... +++...+-|+.+ ...|++.|.|+..+.. ...+++++.+++.|.||+ +|+|.
T Consensus 67 ~~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~-----------~~~~~l~~~~~~~~~kvI--~S~H~ 127 (228)
T TIGR01093 67 ISEGGKFPGNEEEYLEELKRAADSPGPDFVDIELFLPD-----------DAVKELINIAKKGGTKII--MSYHD 127 (228)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEccCCH-----------HHHHHHHHHHHHCCCEEE--EeccC
Confidence 33455443 223333335554 6789999999987631 246788888899999985 99994
No 237
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=27.14 E-value=1e+02 Score=30.90 Aligned_cols=59 Identities=15% Similarity=0.110 Sum_probs=36.7
Q ss_pred hHHHHHHHhHcCcEEEEeecccccCCcCCCCCCCChHHHHHHHHHHHHHcCCCeecccCc
Q 009981 374 FLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSA 433 (521)
Q Consensus 374 Y~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl 433 (521)
...+++.|-+.|+...++|+.-.--... ---..--++++..+...+++.||..+|||.-
T Consensus 123 ~~~ll~e~i~~Gf~aiIv~V~~~~L~~~-~LGr~l~~e~i~~L~~~~~~~gvdp~GE~GE 181 (218)
T PF01902_consen 123 REELLREFIESGFEAIIVKVDADGLDES-FLGRELDRELIEELPELNKKYGVDPCGEGGE 181 (218)
T ss_dssp HHHHHHHHHHTT-EEEEEEEESTT--GG-GTT-B--HHHHHHHHHHHHHH---TT-TTTT
T ss_pred HHHHHHHHHHCCCeEEEEEEeccCCChH-HCCCCccHHHHHHHHHHHhhcCccccCCCee
Confidence 3577788888899999999864322111 0112234689999999999999999999975
No 238
>PRK14705 glycogen branching enzyme; Provisional
Probab=26.96 E-value=1.1e+02 Score=38.13 Aligned_cols=51 Identities=20% Similarity=0.183 Sum_probs=36.3
Q ss_pred HHHHHH-HHHHHHcCCceEEEeeeeeeeecCCCcccccch-----------------HHHHHHHHHHCCCcEEE
Q 009981 97 KAMAQS-FKALAAAGVEGVVVEVWWGVVERDRPGVYDWRG-----------------YFDLIVLASNCGLKVRA 152 (521)
Q Consensus 97 ~~~~~d-L~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~-----------------Y~~l~~mv~~~GLKv~~ 152 (521)
+.+.+. |..||++||+.|.+-- +.| -|..+.|.+ ++++++.+.++||+|+.
T Consensus 765 ~~l~~~lldYlk~LGvt~IeLmP---v~e--~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VIL 833 (1224)
T PRK14705 765 RELAKELVDYVKWLGFTHVEFMP---VAE--HPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLL 833 (1224)
T ss_pred HHHHHHHHHHHHHhCCCEEEECc---ccc--CCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 445555 6999999999997632 122 133344533 89999999999999973
No 239
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=26.71 E-value=2.1e+02 Score=29.79 Aligned_cols=106 Identities=16% Similarity=0.195 Sum_probs=72.7
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccCh
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQ 173 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~ 173 (521)
.+++..+.-++.|++.+||||-+-- ... -+.+.+++.+.|++++.|-... |
T Consensus 98 ~~~~~e~~~~~~l~~~~vdGiIi~~----~~~----------~~~~~~~l~~~~~P~V~i~~~~--------------~- 148 (333)
T COG1609 98 DDPEKEREYLETLLQKRVDGLILLG----ERP----------NDSLLELLAAAGIPVVVIDRSP--------------P- 148 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec----CCC----------CHHHHHHHHhcCCCEEEEeCCC--------------c-
Confidence 3788889999999999999998864 222 2567889999999998665531 1
Q ss_pred hhhhhhccCCCeeeeCCCCcc--cccccccccCcccccCCCCchHHHHHHHHHHHHHHhHhh
Q 009981 174 WVLEEIDKDPDLAYSDRFGRR--NMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL 233 (521)
Q Consensus 174 WV~~~~~k~PDI~~tD~~G~r--~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~ 233 (521)
. ...|-|..=|+.|-+ -+.-+..|..++-++.|.......++-.+.|++.++++-
T Consensus 149 ---~--~~~~~V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~ 205 (333)
T COG1609 149 ---G--LGVPSVGIDNFAGAYLATEHLIELGHRRIAFIGGPLDSSASRERLEGYRAALREAG 205 (333)
T ss_pred ---c--CCCCEEEEChHHHHHHHHHHHHHCCCceEEEEeCCCccccHhHHHHHHHHHHHHCC
Confidence 0 123334444445554 455666777777777776545677777888888887664
No 240
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=26.28 E-value=1.3e+02 Score=29.25 Aligned_cols=65 Identities=20% Similarity=0.195 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccChhh
Q 009981 96 RKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWV 175 (521)
Q Consensus 96 ~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~WV 175 (521)
.+.+.+-++..|+.|.+. ..+. ..-..++.+.+.++++.+.+.|.+.+ .|+ ||.-+-.|..+
T Consensus 107 ~~~~~~~v~~ak~~g~~v-----~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~i-~l~---------Dt~G~~~P~~v 168 (237)
T PF00682_consen 107 LERIEEAVKYAKELGYEV-----AFGC---EDASRTDPEELLELAEALAEAGADII-YLA---------DTVGIMTPEDV 168 (237)
T ss_dssp HHHHHHHHHHHHHTTSEE-----EEEE---TTTGGSSHHHHHHHHHHHHHHT-SEE-EEE---------ETTS-S-HHHH
T ss_pred HHHHHHHHHHHHhcCCce-----EeCc---cccccccHHHHHHHHHHHHHcCCeEE-Eee---------CccCCcCHHHH
Confidence 456677788889999887 2222 22568899999999999999999986 444 68888999988
Q ss_pred hhh
Q 009981 176 LEE 178 (521)
Q Consensus 176 ~~~ 178 (521)
.+.
T Consensus 169 ~~l 171 (237)
T PF00682_consen 169 AEL 171 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
No 241
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=26.10 E-value=59 Score=33.34 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=38.7
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEeee-eeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCC
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPG 164 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdVw-WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVG 164 (521)
.+.+...++ +.+++-++++|.+|+- +|-+. ...+++++++++|++++ ++.| |.+++|
T Consensus 236 ~~~~~~~~~---~~~~~~~~d~v~~~~~~~GGi~----------~~~~~~~~a~~~gi~~~--~~~~-~~~~i~ 293 (316)
T cd03319 236 SCFSAADAA---RLAGGGAYDGINIKLMKTGGLT----------EALRIADLARAAGLKVM--VGCM-VESSLS 293 (316)
T ss_pred CCCCHHHHH---HHHhcCCCCEEEEeccccCCHH----------HHHHHHHHHHHcCCCEE--EECc-hhhHHH
Confidence 344544443 5567789999999987 34333 34799999999999986 4433 355554
No 242
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=26.08 E-value=1.2e+02 Score=36.94 Aligned_cols=121 Identities=14% Similarity=0.172 Sum_probs=65.8
Q ss_pred cCCceEEEeeeeeeeecCCCcc---cccchH---HHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccChh-hhhhhcc
Q 009981 109 AGVEGVVVEVWWGVVERDRPGV---YDWRGY---FDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQW-VLEEIDK 181 (521)
Q Consensus 109 aGVdgV~vdVwWG~VE~~~p~~---Ydws~Y---~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~W-V~~~~~k 181 (521)
.|..-||++=- -+..++= =+|+-| .+|.++++++|+++ .=||.+||-||- ...|...= +.+-...
T Consensus 616 ~~~qeVMlGYS----DS~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l---~~FhGrGGsvgR-GGgp~~~aIlsqp~~~ 687 (974)
T PTZ00398 616 NGIQEIMIGYS----DSGKDGGRLTSAWELYKAQERLSNIARQYGVEI---RFFHGRGGSVSR-GGGPQHLAILSQPPNT 687 (974)
T ss_pred CCeEEEEEecc----cccccccHHHHHHHHHHHHHHHHHHHHHcCCcE---EEecCCCCCCCC-CCCChHHHHhcCCCcc
Confidence 67777887643 1111111 145555 46778889999998 579999999985 22221111 1111224
Q ss_pred CCCeeeeCCCCcc-------------cccccccccCcccccCCCCc-hHHHHHHHHHHHHHHhHhhhhhh
Q 009981 182 DPDLAYSDRFGRR-------------NMEYISLGCDILPVLRGRSP-IQAYTDFMRNFRDTFRPLLGAII 237 (521)
Q Consensus 182 ~PDI~~tD~~G~r-------------~~EclSlg~D~~pv~~GRTp-i~~Y~dfm~sF~~~fa~~~g~vI 237 (521)
.+..+...+.|.. +-|-+.-++=+-.+..-..| .+.|++.|..+.+...+.|.++|
T Consensus 688 ~~g~ir~TeQGE~i~~ky~~~~~a~~~le~~~aA~l~~~~~~~~~~~~~~~~~~m~~la~~s~~~Yr~lv 757 (974)
T PTZ00398 688 IKSYLRITIQGETITQNFGLKGICLRTWELYMSALLKCSLLADPIPVKQEWRELMDEMSEISMKEYRKVV 757 (974)
T ss_pred ccCeeEEeeechhhHHhcCChHHHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666622 11110000000000111113 46799999999999999998765
No 243
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=26.05 E-value=4.4e+02 Score=25.65 Aligned_cols=109 Identities=14% Similarity=0.250 Sum_probs=66.7
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeee-eee-eec--CCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCcc
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVW-WGV-VER--DRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWV 169 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVw-WG~-VE~--~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~i 169 (521)
.+.+.++..+++++..|++.|++-.- .-. .+. ...-+...+-..++++.+++.|+++. +++ - +.+.
T Consensus 64 ~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~--~~~-------~-~~~~ 133 (237)
T PF00682_consen 64 ANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVA--FGC-------E-DASR 133 (237)
T ss_dssp SCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEE--EEE-------T-TTGG
T ss_pred ehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceE--eCc-------c-cccc
Confidence 45677888899999999999887653 110 000 00122336678899999999999995 442 1 2233
Q ss_pred ccChhhhhhhc----cCCC-eeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHHhH
Q 009981 170 PLPQWVLEEID----KDPD-LAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRP 231 (521)
Q Consensus 170 pLP~WV~~~~~----k~PD-I~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~ 231 (521)
.-|..+.+..+ ..+| |.+.|-.|.- +| ..+.++.+.+++++.+
T Consensus 134 ~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~------------------~P-~~v~~lv~~~~~~~~~ 181 (237)
T PF00682_consen 134 TDPEELLELAEALAEAGADIIYLADTVGIM------------------TP-EDVAELVRALREALPD 181 (237)
T ss_dssp SSHHHHHHHHHHHHHHT-SEEEEEETTS-S-------------------H-HHHHHHHHHHHHHSTT
T ss_pred ccHHHHHHHHHHHHHcCCeEEEeeCccCCc------------------CH-HHHHHHHHHHHHhccC
Confidence 44666666322 2345 6667766653 36 4556788888877764
No 244
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=26.02 E-value=90 Score=33.79 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCCceEEEeeeeeeeec----CCCcccccchHHHHHHHHHHCCCcEEEEEee
Q 009981 98 AMAQSFKALAAAGVEGVVVEVWWGVVER----DRPGVYDWRGYFDLIVLASNCGLKVRALLAF 156 (521)
Q Consensus 98 ~~~~dL~~LK~aGVdgV~vdVwWG~VE~----~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsf 156 (521)
.+++-|+.||+||++.+...-===+.|. ..|.+=++++..++.+.+.+.||+-...|-+
T Consensus 159 s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml~ 221 (370)
T COG1060 159 SYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLL 221 (370)
T ss_pred CHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEE
Confidence 4566799999999999887543223333 4588899999999999999999999887775
No 245
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=25.93 E-value=1.6e+02 Score=23.78 Aligned_cols=46 Identities=13% Similarity=0.013 Sum_probs=37.0
Q ss_pred HHHHHHhHcCcEEEEeecccccCCcCCCCCCCChHHHHHHHHHHHHHcCCCee
Q 009981 376 PIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLE 428 (521)
Q Consensus 376 ~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~ 428 (521)
.+|.+|++.|..+++ +|+.+.-.| ..++.+...+....++.||.+-
T Consensus 13 E~A~~l~~~g~~vtl--i~~~~~~~~-----~~~~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 13 ELAEALAELGKEVTL--IERSDRLLP-----GFDPDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp HHHHHHHHTTSEEEE--EESSSSSST-----TSSHHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHhCcEEEE--Eeccchhhh-----hcCHHHHHHHHHHHHHCCCEEE
Confidence 578999999987755 888766543 5678899999999999999874
No 246
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=25.81 E-value=1.6e+02 Score=28.06 Aligned_cols=43 Identities=21% Similarity=0.019 Sum_probs=34.1
Q ss_pred HHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEe
Q 009981 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLA 155 (521)
Q Consensus 102 dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vls 155 (521)
+++.++++|.|.|.+....+. ..-.++++.+++.|+++.+-|.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~-----------~~~~~~i~~~~~~g~~~~~~~~ 110 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADD-----------ATIKGAVKAAKKHGKEVQVDLI 110 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCH-----------HHHHHHHHHHHHcCCEEEEEec
Confidence 788899999999999865421 2246899999999999986554
No 247
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=25.68 E-value=1.3e+02 Score=30.50 Aligned_cols=44 Identities=20% Similarity=0.135 Sum_probs=31.9
Q ss_pred HHHHHHHcCCceEEEeeeeeeeecCCCccccc----chHHHHHHHHHHCCCcEEEEEe
Q 009981 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYDW----RGYFDLIVLASNCGLKVRALLA 155 (521)
Q Consensus 102 dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydw----s~Y~~l~~mv~~~GLKv~~vls 155 (521)
...+||++|++.|.|+-. |++-.| +--.+-+..+.++||+.+ +|
T Consensus 76 S~~mL~d~G~~~viiGHS--------ERR~~f~Et~~~i~~Kv~~a~~~gl~pI--vC 123 (242)
T cd00311 76 SAEMLKDAGAKYVIIGHS--------ERRQYFGETDEDVAKKVKAALEAGLTPI--LC 123 (242)
T ss_pred CHHHHHHcCCCEEEeCcc--------cccCcCCCCcHHHHHHHHHHHHCCCEEE--EE
Confidence 568999999999999864 444333 334444557889999975 88
No 248
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=25.49 E-value=99 Score=37.38 Aligned_cols=102 Identities=17% Similarity=0.257 Sum_probs=56.0
Q ss_pred ccchHH---HHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccChhhhhh-hccCCCeeeeCCCCcc-------------
Q 009981 132 DWRGYF---DLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEE-IDKDPDLAYSDRFGRR------------- 194 (521)
Q Consensus 132 dws~Y~---~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~WV~~~-~~k~PDI~~tD~~G~r------------- 194 (521)
+|+-|+ ++.++++++|+++ -=||.+||-||-----..-+.+.+- |..+-.|-+| +.|..
T Consensus 581 ~w~l~~Aq~~L~~~~~~~gv~l---~~FhGrGGsv~RGGgp~~~ai~~qp~g~~~g~iR~T-eQGEvI~~kY~~~~~a~~ 656 (911)
T PRK00009 581 NWALYRAQEALVELAEKHGVRL---TLFHGRGGTVGRGGGPAYAAILSQPPGSVKGRIRVT-EQGEVIRSKYGLPEVARR 656 (911)
T ss_pred HHHHHHHHHHHHHHHHHcCCcE---EEecCCCCCCCCCCChHHHHHHhCCCccccCceEEE-eechhHHHhcCChHHHHH
Confidence 566665 6777889999998 5699999999864331111222221 1122223333 44421
Q ss_pred cccccccccCcccccCCCCchHHHHHHHHHHHHHHhHhhhhhh
Q 009981 195 NMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAII 237 (521)
Q Consensus 195 ~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~fa~~~g~vI 237 (521)
|-|-+.=++=+--+..-..+.+.|++.|..+.+...+.|.+++
T Consensus 657 nLE~~~~a~l~~~~~~~~~~~~~~~~~m~~ls~~s~~~Yr~lv 699 (911)
T PRK00009 657 NLELLTAATLEASLLPPPEPKPEWREIMDELSDRSCKAYRGLV 699 (911)
T ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111110110000011112457899999999999999998866
No 249
>PRK15492 triosephosphate isomerase; Provisional
Probab=25.45 E-value=1.3e+02 Score=31.14 Aligned_cols=44 Identities=14% Similarity=0.012 Sum_probs=34.8
Q ss_pred HHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHH----HHHHHHHCCCcEEEEEe
Q 009981 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFD----LIVLASNCGLKVRALLA 155 (521)
Q Consensus 102 dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~----l~~mv~~~GLKv~~vls 155 (521)
.-.+||++|++.|.|+-. |++=.|..=++ -++.+.++||+.+ +|
T Consensus 86 Sa~mLkd~G~~~viiGHS--------ERR~~f~Etd~~v~~Kv~~a~~~gl~pI--vC 133 (260)
T PRK15492 86 SPLMLKEIGTQLVMIGHS--------ERRHKFGETDQEENAKVLAALKHDFTTL--LC 133 (260)
T ss_pred CHHHHHHcCCCEEEECcc--------ccccccCcchHHHHHHHHHHHHCCCEEE--EE
Confidence 457899999999999864 55556777777 6667889999885 77
No 250
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=25.41 E-value=63 Score=27.30 Aligned_cols=49 Identities=16% Similarity=0.244 Sum_probs=35.5
Q ss_pred HHHHHHhHcCcEE------------------EEeecccccCCcCCCCCCCChHHHHHHHHHHHHHcCCCeec
Q 009981 376 PIARIFGRYGFTL------------------CCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEG 429 (521)
Q Consensus 376 ~Ia~mf~r~~~~l------------------~fTclEM~d~e~p~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~G 429 (521)
.|++.++.||+.+ --.|||..-...| .+++.|-.++...+++.||.++=
T Consensus 16 ~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~-----~~~~~lr~~L~~la~elgvDIav 82 (84)
T cd04871 16 AVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQP-----ADLEALRAALLELASELNVDIAF 82 (84)
T ss_pred HHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCC-----CCHHHHHHHHHHHhcccCceEEE
Confidence 5666777766632 1348887655432 58899999999999999998864
No 251
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=25.41 E-value=1.8e+02 Score=30.89 Aligned_cols=87 Identities=21% Similarity=0.127 Sum_probs=63.4
Q ss_pred CeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccc
Q 009981 91 GKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVP 170 (521)
Q Consensus 91 ~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ip 170 (521)
+.+...+.+++.++.||..|.+.|--..=+...+.-+.. +=+-..+|.++..+-..|++ |+. =| |+.++==
T Consensus 20 s~~~~~~~~~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s--~~~R~~dL~~af~d~~vk~I--l~~--rG---Gygs~rl 90 (313)
T COG1619 20 SGATATDALKRAIQRLENLGFEVVFGEHILRRDQYFAGS--DEERAEDLMSAFSDPDVKAI--LCV--RG---GYGSNRL 90 (313)
T ss_pred cccchHHHHHHHHHHHHHcCCEEEechhhhhccccccCC--HHHHHHHHHHHhcCCCCeEE--EEc--cc---CCChhhh
Confidence 344578999999999999998877666555544432111 12345678888889999986 885 34 3467778
Q ss_pred cChhhhhhhccCCCee
Q 009981 171 LPQWVLEEIDKDPDLA 186 (521)
Q Consensus 171 LP~WV~~~~~k~PDI~ 186 (521)
||-|-.+..+++|-|+
T Consensus 91 Lp~ld~~~i~~~pKif 106 (313)
T COG1619 91 LPYLDYDLIRNHPKIF 106 (313)
T ss_pred hhhcchHHHhcCCceE
Confidence 9999988888999887
No 252
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=25.29 E-value=1.9e+02 Score=28.77 Aligned_cols=53 Identities=8% Similarity=-0.049 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHC-CCcEE
Q 009981 97 KAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNC-GLKVR 151 (521)
Q Consensus 97 ~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~-GLKv~ 151 (521)
..|++.|+.+|++|+++|.+.+-...-... +. .+=...+++.++++++ |+.+.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~i~ 63 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLS-RP-LKKERAEKFKAIAEEGPSICLS 63 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCC-CC-CCHHHHHHHHHHHHHcCCCcEE
Confidence 668899999999999999987632100000 00 0115688999999999 66653
No 253
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=25.27 E-value=79 Score=33.49 Aligned_cols=65 Identities=20% Similarity=0.120 Sum_probs=44.5
Q ss_pred ecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCcc
Q 009981 93 VKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWV 169 (521)
Q Consensus 93 v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~i 169 (521)
++....+++=...|+++|++.+ ++.-+|++ | +.+..+++++.+++.+...++-++ ||.|-|+..+
T Consensus 35 ~~~~g~~~~v~~~L~~~g~~~~----~~~~v~~~-p---~~~~v~~~~~~~~~~~~D~IIavG----GGSviD~AK~ 99 (375)
T cd08179 35 MKKFGFLDKVEAYLKEAGIEVE----VFEGVEPD-P---SVETVLKGAEAMREFEPDWIIALG----GGSPIDAAKA 99 (375)
T ss_pred HHhCChHHHHHHHHHHcCCeEE----EeCCCCCC-c---CHHHHHHHHHHHHhcCCCEEEEeC----CccHHHHHHH
Confidence 3333344444556788888643 34455554 2 678889999999999999876665 7788887644
No 254
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=25.22 E-value=1.8e+02 Score=31.66 Aligned_cols=56 Identities=18% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCCcc---------cccchHHHHHHHHHHCCCc-EEEEEeeeccCCCCCCC
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGV---------YDWRGYFDLIVLASNCGLK-VRALLAFHQCGSGPGDP 166 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~---------Ydws~Y~~l~~mv~~~GLK-v~~vlsfHqCGGNVGDt 166 (521)
++.|+.||++|++.|.|++ ++-.. .+++...+.+++++++|++ |.+-|-| |-.|+|
T Consensus 151 ~e~l~~lk~~G~~risiGv-------qS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~----GlPgqt 216 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGV-------QDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIY----GLPKQT 216 (455)
T ss_pred HHHHHHHHHcCCCEEEEcC-------CCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEe----eCCCCC
No 255
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=25.04 E-value=82 Score=33.19 Aligned_cols=29 Identities=14% Similarity=0.370 Sum_probs=27.4
Q ss_pred ecCHHHHHHHHHHHHHcCCceEEEeeeee
Q 009981 93 VKRRKAMAQSFKALAAAGVEGVVVEVWWG 121 (521)
Q Consensus 93 v~~~~~~~~dL~~LK~aGVdgV~vdVwWG 121 (521)
+.+++++++|++..|++||+|-.+.-.|-
T Consensus 54 l~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf 82 (345)
T PF14307_consen 54 LRDPEVMEKQAELAKEYGIDGFCFYHYWF 82 (345)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEeeec
Confidence 68999999999999999999999998887
No 256
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=24.89 E-value=2.6e+02 Score=29.12 Aligned_cols=77 Identities=18% Similarity=0.222 Sum_probs=53.6
Q ss_pred CCCCCCcceEEeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCc
Q 009981 70 QGRRNGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLK 149 (521)
Q Consensus 70 ~~~~~~vpv~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLK 149 (521)
.+..+..-|-+=||..+. +.++++++++-.+.||++|+|.|.+ |.. ...-++++.+-++||-
T Consensus 72 ~Rga~~~~vv~DmPf~sy----~~s~e~av~nA~rl~ke~GadaVKl-------EGg-------~~~~~~i~~l~~~GIP 133 (261)
T PF02548_consen 72 RRGAPNAFVVADMPFGSY----QASPEQAVRNAGRLMKEAGADAVKL-------EGG-------AEIAETIKALVDAGIP 133 (261)
T ss_dssp HHH-TSSEEEEE--TTSS----TSSHHHHHHHHHHHHHTTT-SEEEE-------EBS-------GGGHHHHHHHHHTT--
T ss_pred HhcCCCceEEecCCcccc----cCCHHHHHHHHHHHHHhcCCCEEEe-------ccc-------hhHHHHHHHHHHCCCc
Confidence 355667777788888654 3578999999999999999999986 322 1567899999999999
Q ss_pred EEEEEeeeccCCCCCCCCccccChhhhhh
Q 009981 150 VRALLAFHQCGSGPGDPKWVPLPQWVLEE 178 (521)
Q Consensus 150 v~~vlsfHqCGGNVGDt~~ipLP~WV~~~ 178 (521)
|+.=+.. .|+++...
T Consensus 134 V~gHiGL--------------tPQ~~~~~ 148 (261)
T PF02548_consen 134 VMGHIGL--------------TPQSVHQL 148 (261)
T ss_dssp EEEEEES---------------GGGHHHH
T ss_pred EEEEecC--------------chhheecc
Confidence 8644443 69999874
No 257
>PRK15108 biotin synthase; Provisional
Probab=24.76 E-value=1.9e+02 Score=30.70 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=40.8
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
-+++.+.+..+.+++.||.-|.+..=| + .|-.-++++|.++++.+++.|+++.
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g---~--~p~~~~~e~i~~~i~~ik~~~i~v~ 128 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAW---K--NPHERDMPYLEQMVQGVKAMGLETC 128 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecC---C--CCCcchHHHHHHHHHHHHhCCCEEE
Confidence 355777778888999999998764434 1 2445678999999999999998764
No 258
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=24.71 E-value=90 Score=33.23 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCCc----------ccccchHHHHHHHHHHCCCc
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPG----------VYDWRGYFDLIVLASNCGLK 149 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~----------~Ydws~Y~~l~~mv~~~GLK 149 (521)
.++++.||++||+.+++.. |.-.+. .-+|..-.+.+++++++|++
T Consensus 162 ~e~~~~Lk~aGv~r~~i~l-----ET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~ 216 (366)
T TIGR02351 162 EEEYKKLVEAGLDGVTVYQ-----ETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMR 216 (366)
T ss_pred HHHHHHHHHcCCCEEEEEe-----ecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 5677999999999998853 322122 33566667789999999997
No 259
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=24.68 E-value=1.5e+02 Score=28.34 Aligned_cols=97 Identities=25% Similarity=0.279 Sum_probs=55.0
Q ss_pred CCcceEEeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEE
Q 009981 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRAL 153 (521)
Q Consensus 74 ~~vpv~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~v 153 (521)
...-.++.+|.. ..+++.++=.+.+++.|+-||.+....+-.-+..+. .++++++.+.++|+-|.
T Consensus 70 ~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~pv~-- 134 (273)
T PF04909_consen 70 DRFIGFAAIPPP--------DPEDAVEELERALQELGFRGVKLHPDLGGFDPDDPR-----LDDPIFEAAEELGLPVL-- 134 (273)
T ss_dssp TTEEEEEEETTT--------SHHHHHHHHHHHHHTTTESEEEEESSETTCCTTSGH-----CHHHHHHHHHHHT-EEE--
T ss_pred CCEEEEEEecCC--------CchhHHHHHHHhccccceeeeEecCCCCccccccHH-----HHHHHHHHHHhhcccee--
Confidence 344555555552 344667766777779999999988765444443222 22899999999998664
Q ss_pred EeeeccCCC--CCCCCccccChhhhhhhccCCCeeee
Q 009981 154 LAFHQCGSG--PGDPKWVPLPQWVLEEIDKDPDLAYS 188 (521)
Q Consensus 154 lsfHqCGGN--VGDt~~ipLP~WV~~~~~k~PDI~~t 188 (521)
+| ||+. ...+.....|.=+.+..+++|++-+.
T Consensus 135 --~H-~g~~~~~~~~~~~~~~~~~~~~~~~~P~l~ii 168 (273)
T PF04909_consen 135 --IH-TGMTGFPDAPSDPADPEELEELLERFPDLRII 168 (273)
T ss_dssp --EE-ESHTHHHHHHHHHHHHHHHTTHHHHSTTSEEE
T ss_pred --ee-ccccchhhhhHHHHHHHHHHHHHHHhcCCeEE
Confidence 34 1100 00011122333344455688885544
No 260
>PRK08508 biotin synthase; Provisional
Probab=24.63 E-value=2.1e+02 Score=29.31 Aligned_cols=53 Identities=11% Similarity=-0.085 Sum_probs=38.0
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
.+++.+.+..+.+++.|+..+.+-.-+- +....++++|.++++.+++.++++.
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~-----~~~~~~~e~~~ei~~~ik~~~p~l~ 92 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGR-----GLDDKKLEYVAEAAKAVKKEVPGLH 92 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccC-----CCCcccHHHHHHHHHHHHhhCCCcE
Confidence 4567778888889999998876511111 1223478999999999999877654
No 261
>PRK05926 hypothetical protein; Provisional
Probab=24.60 E-value=66 Score=34.59 Aligned_cols=56 Identities=18% Similarity=0.327 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCceEEEe---ee-eeeeecCCCcccccchHHHHHHHHHHCCCcEEEEE
Q 009981 99 MAQSFKALAAAGVEGVVVE---VW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALL 154 (521)
Q Consensus 99 ~~~dL~~LK~aGVdgV~vd---Vw-WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vl 154 (521)
.++.|+.||+||++.+-.. +. .-+-+.-.|+.-....+.+.++.++++||++..-|
T Consensus 168 ~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgm 227 (370)
T PRK05926 168 VKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATM 227 (370)
T ss_pred HHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCce
Confidence 4677999999999877643 11 11122223566667778999999999999996433
No 262
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=24.58 E-value=1.8e+02 Score=29.65 Aligned_cols=69 Identities=16% Similarity=0.081 Sum_probs=51.6
Q ss_pred ecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccC
Q 009981 93 VKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLP 172 (521)
Q Consensus 93 v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP 172 (521)
+++-+.+..-++..|+.|... ++.+ +. + . ...++.+.|.++++.+.+.|.+.+ + +.||.-+..|
T Consensus 114 ~~~~~~~~~~i~~ak~~G~~v-~~~i--~~-~-~-~~~~~~~~~~~~~~~~~~~Ga~~i---~-------l~DT~G~~~P 177 (275)
T cd07937 114 LNDVRNLEVAIKAVKKAGKHV-EGAI--CY-T-G-SPVHTLEYYVKLAKELEDMGADSI---C-------IKDMAGLLTP 177 (275)
T ss_pred CChHHHHHHHHHHHHHCCCeE-EEEE--Ee-c-C-CCCCCHHHHHHHHHHHHHcCCCEE---E-------EcCCCCCCCH
Confidence 366788999999999999653 3322 11 1 1 267899999999999999999985 3 2488888888
Q ss_pred hhhhh
Q 009981 173 QWVLE 177 (521)
Q Consensus 173 ~WV~~ 177 (521)
.=+.+
T Consensus 178 ~~v~~ 182 (275)
T cd07937 178 YAAYE 182 (275)
T ss_pred HHHHH
Confidence 86655
No 263
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=24.54 E-value=3.2e+02 Score=28.32 Aligned_cols=104 Identities=17% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCCcccccch------HHHHHHHHHHCCCcEEEEEee-eccCCCCCCCCccccC
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRG------YFDLIVLASNCGLKVRALLAF-HQCGSGPGDPKWVPLP 172 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~------Y~~l~~mv~~~GLKv~~vlsf-HqCGGNVGDt~~ipLP 172 (521)
..|+++..++|++.|.+-+ ..-|.....+++++- ..+.++.++++|+++++.+++ -.|- .-...-|
T Consensus 82 ~~~ie~A~~~g~~~v~i~~--~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~-----~~~~~~~ 154 (287)
T PRK05692 82 LKGLEAALAAGADEVAVFA--SASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP-----YEGEVPP 154 (287)
T ss_pred HHHHHHHHHcCCCEEEEEE--ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC-----CCCCCCH
Q ss_pred hhhhhhhcc-----CCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHH
Q 009981 173 QWVLEEIDK-----DPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTF 229 (521)
Q Consensus 173 ~WV~~~~~k-----~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~f 229 (521)
..+.+..+. -..|.+.|--|.-+ | +...++++.+++++
T Consensus 155 ~~~~~~~~~~~~~G~d~i~l~DT~G~~~------------------P-~~v~~lv~~l~~~~ 197 (287)
T PRK05692 155 EAVADVAERLFALGCYEISLGDTIGVGT------------------P-GQVRAVLEAVLAEF 197 (287)
T ss_pred HHHHHHHHHHHHcCCcEEEeccccCccC------------------H-HHHHHHHHHHHHhC
No 264
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=24.52 E-value=1.5e+02 Score=29.36 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=42.3
Q ss_pred HHHHHHHhHcCcEEEEeecccccCCcCCCCCCCChHHHHHHHHHHHHHcCCCeecccCc
Q 009981 375 LPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSA 433 (521)
Q Consensus 375 ~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl 433 (521)
..|++.+.+.|.....+|+.-.--... ---..--+.++..+....++.|+.++|||.-
T Consensus 125 ~el~~~~~~~G~~~~i~~v~~~~l~~~-~lG~~~~~~~~~~l~~l~~~~~~~~~GE~GE 182 (218)
T TIGR03679 125 EEYLRELVERGFRFIIVSVSAYGLDES-WLGREIDEKYIEKLKALNKRYGINPAGEGGE 182 (218)
T ss_pred HHHHHHHHHCCCEEEEEEEecCCCChH-HCCCccCHHHHHHHHHHHhhcCccccCCCce
Confidence 479999999999999999864311110 0012233578888999999999999999975
No 265
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=24.42 E-value=2.1e+02 Score=31.35 Aligned_cols=58 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCC-------CcccccchHHHHHHHHHHCCCc-EEEEEeeeccCCCCCCC
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDR-------PGVYDWRGYFDLIVLASNCGLK-VRALLAFHQCGSGPGDP 166 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~-------p~~Ydws~Y~~l~~mv~~~GLK-v~~vlsfHqCGGNVGDt 166 (521)
++.|+.||++||+.|.|+| |.-. .+.++.+...+.+++++++|++ |.+-|-+ |-.|.|
T Consensus 152 ~e~l~~L~~~G~~rvsiGv-----QS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~----GlPgqt 217 (453)
T PRK13347 152 AEMLQALAALGFNRASFGV-----QDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIY----GLPHQT 217 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-----CCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEE----eCCCCC
No 266
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.32 E-value=1.3e+02 Score=29.68 Aligned_cols=59 Identities=8% Similarity=0.077 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHcCCceEEEeeeeeeeecCCCccccc--chHHHHHHHHHHCCCcEEEEEeee
Q 009981 97 KAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDW--RGYFDLIVLASNCGLKVRALLAFH 157 (521)
Q Consensus 97 ~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydw--s~Y~~l~~mv~~~GLKv~~vlsfH 157 (521)
+.++.-|+..+.+|++.|.+.-+-...++..+..++. ..++++.+++++.|+++. +=+|
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLA--VEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEE--EEec
Confidence 5678888899999999998742210112211111121 357889999999999875 5544
No 267
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=24.18 E-value=1.7e+02 Score=33.47 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=42.9
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEee
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAF 156 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsf 156 (521)
.+.+.++.++++.+++||+.|+|-.-...+ .-....++.++++|+.+++.+|+
T Consensus 88 ypddvv~~~v~~a~~~Gvd~irif~~lnd~----------~n~~~~i~~ak~~G~~v~~~i~~ 140 (582)
T TIGR01108 88 YADDVVERFVKKAVENGMDVFRIFDALNDP----------RNLQAAIQAAKKHGAHAQGTISY 140 (582)
T ss_pred CchhhHHHHHHHHHHCCCCEEEEEEecCcH----------HHHHHHHHHHHHcCCEEEEEEEe
Confidence 356789999999999999998887664333 35788899999999999987774
No 268
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=24.11 E-value=1.4e+02 Score=29.50 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=55.5
Q ss_pred HHHHHHhHcCcEEEEeecccccCCcCCCCCCCChHHHHHHHHHHHHHcCCCeecccCccccChHHHHHHHHhhcccCCCC
Q 009981 376 PIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYSEGL 455 (521)
Q Consensus 376 ~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~~~~~ 455 (521)
.+.+.++++|..+.+..++..|-... ....|+..+++|+..++.-.|-|.=.+.. ...+++.+|+...+-
T Consensus 143 ~~~~~l~~~Gy~~v~w~v~~~Dw~~~---~~~~~~~~~~~v~~~~~~g~IiLlHd~~~--~t~~aL~~ii~~lk~----- 212 (224)
T TIGR02884 143 RTLAYTKELGYYTVFWSLAFKDWKVD---EQPGWQYAYKQIMKKIHPGAILLLHAVSK--DNAEALDKIIKDLKE----- 212 (224)
T ss_pred HHHHHHHHcCCcEEeccccCcccCCC---CCCCHHHHHHHHHhcCCCCcEEEEECCCC--CHHHHHHHHHHHHHH-----
Confidence 58889999999999999987776532 12457888999887665544555433211 134688999987642
Q ss_pred CCCcceeeEecCCcc
Q 009981 456 EKPSFSFNFLRMDKN 470 (521)
Q Consensus 456 ~~~~~~FTylRm~~~ 470 (521)
. ||+|.++.+.
T Consensus 213 ~----Gy~fvtl~el 223 (224)
T TIGR02884 213 Q----GYTFKSLDDL 223 (224)
T ss_pred C----CCEEEEhHHc
Confidence 2 6888877653
No 269
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=23.77 E-value=2.9e+02 Score=29.67 Aligned_cols=95 Identities=13% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCCc----------ccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCcc
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPG----------VYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWV 169 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~----------~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~i 169 (521)
.+|++.+.++|++.|.+-+ +.+|- ...++-..+.++.+++.|++|.+..- +.+-
T Consensus 78 ~~di~~a~~~g~~~i~i~~------~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e----------d~~r 141 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFI------ATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAE----------DASR 141 (378)
T ss_pred HHHHHHHHhCCcCEEEEEE------cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEec----------cCCC
Q ss_pred ccChhhhhhhccCCC-----eeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHH
Q 009981 170 PLPQWVLEEIDKDPD-----LAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTF 229 (521)
Q Consensus 170 pLP~WV~~~~~k~PD-----I~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~f 229 (521)
.-|..+.+..+.--+ |.+.|-.|.-. | ..+.++.+.+++++
T Consensus 142 ~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~------------------P-~~v~~lv~~l~~~~ 187 (378)
T PRK11858 142 TDLDFLIEFAKAAEEAGADRVRFCDTVGILD------------------P-FTMYELVKELVEAV 187 (378)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccCCCCC------------------H-HHHHHHHHHHHHhc
No 270
>PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine []. The N-terminal and C-terminal domains of MetE together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilise a loop from the C-terminal domain.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0008270 zinc ion binding, 0008652 cellular amino acid biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3T0C_A 3L7R_A 2NQ5_A 3PPF_A 3PPH_A 3PPG_A ....
Probab=23.74 E-value=1.1e+02 Score=32.43 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=21.6
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCC
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGL 148 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GL 148 (521)
++-++..|++|||-|.++ |||+||.+.|++--.|.
T Consensus 42 ~~~w~~q~~agld~ip~g--------------dfs~YD~vLD~~~~~g~ 76 (310)
T PF08267_consen 42 KEHWQLQKEAGLDLIPVG--------------DFSLYDHVLDTAVLLGA 76 (310)
T ss_dssp HHHHHHHHHTT-SBEEES-----------------SS-HHHHHHHHTT-
T ss_pred HHHHHHHHHcCCCcccCC--------------CCchhhHHHHHHHHhcc
Confidence 345667889999998875 67777777777766554
No 271
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=23.54 E-value=65 Score=33.61 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=25.1
Q ss_pred ccCCCCCCChHHHHHHHhHcCcEEEEeec
Q 009981 365 YYNTSTRDGFLPIARIFGRYGFTLCCSCF 393 (521)
Q Consensus 365 yyN~~~rdGY~~Ia~mf~r~~~~l~fTcl 393 (521)
.+.+-+|-|.-.|+++|+|||+..+|-+.
T Consensus 70 ~~~YG~rvG~~RiLdlL~~~gv~aTffv~ 98 (297)
T TIGR03212 70 LYEYGSRAGFWRLLRLFTERGIPVTVFGV 98 (297)
T ss_pred hhhhcchhCHHHHHHHHHHcCCCEEEEeE
Confidence 45666789999999999999999999764
No 272
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=23.48 E-value=1.6e+02 Score=29.38 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=37.6
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCccc--ccchHHHHHHHHHHC
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVY--DWRGYFDLIVLASNC 146 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Y--dws~Y~~l~~mv~~~ 146 (521)
-|...++++|+.|+++|++-+.+||= +|+| |.+.=-++++.+|+.
T Consensus 9 ad~~~l~~~i~~l~~~g~~~lH~Dvm--------DG~Fvpn~tfg~~~i~~i~~~ 55 (220)
T PRK08883 9 ADFARLGEDVEKVLAAGADVVHFDVM--------DNHYVPNLTFGAPICKALRDY 55 (220)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecc--------cCcccCccccCHHHHHHHHHh
Confidence 46788999999999999999999995 7777 667767777778775
No 273
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=23.41 E-value=1.8e+02 Score=28.69 Aligned_cols=53 Identities=8% Similarity=-0.022 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 97 KAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 97 ~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
..++..|..+.++|+++|.+.. +......+..++=...+++-+++++.||++.
T Consensus 10 ~~~~~~~~~~~~~G~~~vel~~--~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls 62 (273)
T smart00518 10 GGLYKAFIEAVDIGARSFQLFL--GNPRSWKGVRLSEETAEKFKEALKENNIDVS 62 (273)
T ss_pred CcHhHHHHHHHHcCCCEEEEEC--CCCCCCCCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 3578899999999999999832 2111111112333458889999999999963
No 274
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=23.39 E-value=1.2e+02 Score=28.28 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=25.7
Q ss_pred CcceEEeeecceecCCCeecCHHHHHHHHHHHHHcCCceE
Q 009981 75 GSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGV 114 (521)
Q Consensus 75 ~vpv~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV 114 (521)
.+||.|+-.+ +.+++.++.+..+||++||+.|
T Consensus 81 ~v~vivGG~~--------~i~~~d~~~~~~~L~~~Gv~~v 112 (128)
T cd02072 81 DILLYVGGNL--------VVGKQDFEDVEKRFKEMGFDRV 112 (128)
T ss_pred CCeEEEECCC--------CCChhhhHHHHHHHHHcCCCEE
Confidence 5888887665 3677888888999999999876
No 275
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=23.33 E-value=1.6e+02 Score=29.60 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=38.2
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCccc--ccchHHHHHHHHHHCC
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVY--DWRGYFDLIVLASNCG 147 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Y--dws~Y~~l~~mv~~~G 147 (521)
-|...++++|+.|+++|++-+.+||= +|+| |.+.=-++++.+|+..
T Consensus 13 ad~~~l~~~i~~l~~~g~d~lHiDim--------DG~FVPN~tfg~~~i~~lr~~~ 60 (223)
T PRK08745 13 ADFARLGEEVDNVLKAGADWVHFDVM--------DNHYVPNLTIGPMVCQALRKHG 60 (223)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecc--------cCccCCCcccCHHHHHHHHhhC
Confidence 47789999999999999999999995 7777 6666667788887753
No 276
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=23.27 E-value=2.3e+02 Score=27.74 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=41.7
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeee
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFH 157 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfH 157 (521)
.+.+.+++.++.+|+. +|.|-+-.=||.-....|. +.-+++++.+-+.|..++ ++-|
T Consensus 159 ~~~~~~~~~i~~lr~~-~D~vIv~~H~G~e~~~~p~----~~~~~la~~l~~~G~D~I--iG~H 215 (239)
T cd07381 159 LDLERIAADIAEAKKK-ADIVIVSLHWGVEYSYYPT----PEQRELARALIDAGADLV--IGHH 215 (239)
T ss_pred cCHHHHHHHHHHHhhc-CCEEEEEecCcccCCCCCC----HHHHHHHHHHHHCCCCEE--EcCC
Confidence 3568899999999998 9999998889973222122 234567777778999985 7766
No 277
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=23.24 E-value=1.1e+02 Score=34.26 Aligned_cols=55 Identities=24% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCCccc---------------ccchHHHHHHHHHHCCCc-EEEEEeeeccCCCC
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGVY---------------DWRGYFDLIVLASNCGLK-VRALLAFHQCGSGP 163 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Y---------------dws~Y~~l~~mv~~~GLK-v~~vlsfHqCGGNV 163 (521)
.++++.||++||+.+.+. ...| +|.+=.+.++.++++|++ | .+|+=+
T Consensus 180 ~eey~~LkeaGv~~~~l~----------qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~V-------g~G~L~ 242 (469)
T PRK09613 180 VENYKKLKEAGIGTYQLF----------QETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDV-------GIGVLF 242 (469)
T ss_pred HHHHHHHHHcCCCEEEec----------cccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCee-------CeEEEE
Q ss_pred CCCCccccChhhhh
Q 009981 164 GDPKWVPLPQWVLE 177 (521)
Q Consensus 164 GDt~~ipLP~WV~~ 177 (521)
| ||.|..+
T Consensus 243 G------Lge~~~E 250 (469)
T PRK09613 243 G------LYDYKFE 250 (469)
T ss_pred c------CCCCHHH
No 278
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=23.22 E-value=5.1e+02 Score=26.60 Aligned_cols=100 Identities=21% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCC----------cccccchHHHHHHHHHHCCCcEEEEEe-eeccCCCCCCCCc
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDRP----------GVYDWRGYFDLIVLASNCGLKVRALLA-FHQCGSGPGDPKW 168 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~p----------~~Ydws~Y~~l~~mv~~~GLKv~~vls-fHqCGGNVGDt~~ 168 (521)
.+|+++..++|++.|.+-+- .++ .....+-..+.++.++++|+++++.++ ...|. .-.
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~------~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~-----~~~ 144 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVS------ASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCP-----YEG 144 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEe------cCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCC-----CCC
Q ss_pred cccChhhhhhhcc-----CCCeeeeCCCCcccccccccccCcccccCCCCchHHHHHHHHHHHHHH
Q 009981 169 VPLPQWVLEEIDK-----DPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTF 229 (521)
Q Consensus 169 ipLP~WV~~~~~k-----~PDI~~tD~~G~r~~EclSlg~D~~pv~~GRTpi~~Y~dfm~sF~~~f 229 (521)
..-|..+.+..+. -..|.+.|-.|.-. | +...++.+.+++++
T Consensus 145 ~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~------------------P-~~v~~lv~~l~~~~ 191 (274)
T cd07938 145 EVPPERVAEVAERLLDLGCDEISLGDTIGVAT------------------P-AQVRRLLEAVLERF 191 (274)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCccC------------------H-HHHHHHHHHHHHHC
No 279
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=23.14 E-value=1.9e+02 Score=34.99 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=50.4
Q ss_pred eecCHHHHHHHHHHHHHcCCceEEEeee-eeeeecCCCcccccchHHHHHHHHHHCCCcEEEE
Q 009981 92 KVKRRKAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRAL 153 (521)
Q Consensus 92 ~v~~~~~~~~dL~~LK~aGVdgV~vdVw-WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~v 153 (521)
.||.-+.++-.+.+.+++| ..++.-+- =|.+=..+..+||-.||.++++-+.++|..|..|
T Consensus 652 sLNwv~~M~vaidAV~e~g-kv~EatiCYTGDildp~r~kY~L~YY~~lA~el~~~GaHIlaI 713 (1149)
T COG1038 652 SLNWVEQMRVAIDAVREAG-KVAEATICYTGDILDPGRKKYTLDYYVKLAKELEKAGAHILAI 713 (1149)
T ss_pred hhcchhhhhhHHHHHHhcC-CeEEEEEEeccccCCCCcccccHHHHHHHHHHHHhcCCcEEEe
Confidence 4788899999999999999 66666655 5644444589999999999999999999998655
No 280
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=23.06 E-value=2.7e+02 Score=21.71 Aligned_cols=56 Identities=11% Similarity=-0.046 Sum_probs=40.4
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
+.+..+.+=++.|.++|++...+-+.= -+..+-=+.+..-.+++.+.++++|++|.
T Consensus 10 d~pG~La~v~~~l~~~~inI~~i~~~~--~~~~~~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 10 NKPGRLAAVTEILSEAGINIRALSIAD--TSEFGILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred CCCChHHHHHHHHHHCCCCEEEEEEEe--cCCCCEEEEEECCHHHHHHHHHHCCCEEE
Confidence 456788999999999999998887621 11112223455566789999999999974
No 281
>PRK03906 mannonate dehydratase; Provisional
Probab=23.04 E-value=1.2e+02 Score=33.00 Aligned_cols=50 Identities=12% Similarity=0.197 Sum_probs=35.3
Q ss_pred HHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEe
Q 009981 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLA 155 (521)
Q Consensus 102 dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vls 155 (521)
.|+.+|++||.+|...-- .-......+-+...++-++|.++||++-||=|
T Consensus 15 ~l~~~rQ~G~~~iv~~l~----~~~~g~~W~~~~i~~~~~~ie~~Gl~~~vvEs 64 (385)
T PRK03906 15 TLEDIRQPGATGIVTALH----DIPVGEVWPVEEILARKAEIEAAGLEWSVVES 64 (385)
T ss_pred hHHHHhcCCCCceeecCC----CCCCCCCCCHHHHHHHHHHHHHcCCeEEEEeC
Confidence 477888899999986531 11112455666788888899999999987766
No 282
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=22.92 E-value=1e+02 Score=32.50 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCceEEEeee---eeeeecCCCcccccchHHHHHHHHHHCCCcE
Q 009981 100 AQSFKALAAAGVEGVVVEVW---WGVVERDRPGVYDWRGYFDLIVLASNCGLKV 150 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVw---WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv 150 (521)
.+.|+.||++|++.|.|++= --+.+.- .+.++++...+.+++++++|++.
T Consensus 100 ~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l-~r~~~~~~~~~~i~~l~~~g~~~ 152 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGVQTFNDELLKKI-GRTHNEEDVYEAIANAKKAGFDN 152 (377)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCCHHHHHHHHHHHHHcCCCc
Confidence 57799999999999999863 2233322 45678889999999999999873
No 283
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=22.90 E-value=2.4e+02 Score=36.60 Aligned_cols=63 Identities=16% Similarity=0.046 Sum_probs=46.3
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccc-------------cchHHHHHHHHHHCCCcEEEEEeee
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYD-------------WRGYFDLIVLASNCGLKVRALLAFH 157 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Yd-------------ws~Y~~l~~mv~~~GLKv~~vlsfH 157 (521)
..-+.+.+-|..||++||+.|-+.-.+--... +..-|| .+.++++++.++++||+|+.=+-+.
T Consensus 755 ~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~g-s~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~N 830 (1693)
T PRK14507 755 FTFADAEAILPYLAALGISHVYASPILKARPG-STHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPN 830 (1693)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECCCcCCCCC-CCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 46688999999999999999988766542211 122333 4467899999999999998555543
No 284
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=22.87 E-value=1.1e+02 Score=32.35 Aligned_cols=99 Identities=33% Similarity=0.420 Sum_probs=72.1
Q ss_pred HHHHHHHHHcCCceEEEeeeeeeeecCCC-cccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccChhhhhh
Q 009981 100 AQSFKALAAAGVEGVVVEVWWGVVERDRP-GVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEE 178 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVwWG~VE~~~p-~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~WV~~~ 178 (521)
..-|++|-++|++.|-| +.+|+.| |+=.-=.+--+.+++.++||+| +- ..++--|.|+.+.
T Consensus 14 ~~~L~~L~~~~~eivaV-----~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv---~q----------P~~l~~~e~~~~l 75 (307)
T COG0223 14 VPSLEALIEAGHEIVAV-----VTQPDKPAGRGKKLTPSPVKRLALELGIPV---FQ----------PEKLNDPEFLEEL 75 (307)
T ss_pred HHHHHHHHhCCCceEEE-----EeCCCCccCCCCcCCCChHHHHHHHcCCce---ec----------cccCCcHHHHHHH
Confidence 34577887888777765 3444332 2212233457888999999986 33 3445556799888
Q ss_pred hccCCCeeeeCCCCcc---------cccccccccCcccccCCCCchH
Q 009981 179 IDKDPDLAYSDRFGRR---------NMEYISLGCDILPVLRGRSPIQ 216 (521)
Q Consensus 179 ~~k~PDI~~tD~~G~r---------~~EclSlg~D~~pv~~GRTpi~ 216 (521)
.+-+||++.+=-.|+. ..-|+++-.=-||-++|+.|+|
T Consensus 76 ~~l~~D~ivvvayG~ilp~~iL~~~~~G~iNvH~SLLPr~RGaAPIq 122 (307)
T COG0223 76 AALDPDLIVVVAYGQILPKEILDLPPYGCINLHPSLLPRYRGAAPIQ 122 (307)
T ss_pred hccCCCEEEEEehhhhCCHHHHhcCcCCeEEecCccCccccCccHHH
Confidence 7889999999999988 4569999999999999999766
No 285
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=22.85 E-value=1e+02 Score=34.85 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCCceEEEeee--ee-eeecCCCcccccchHHHHHHHHHHCCCcEEEEEe
Q 009981 99 MAQSFKALAAAGVEGVVVEVW--WG-VVERDRPGVYDWRGYFDLIVLASNCGLKVRALLA 155 (521)
Q Consensus 99 ~~~dL~~LK~aGVdgV~vdVw--WG-~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vls 155 (521)
=++.|+.||++|++-|.++|= -- +.+.- ...++.....+.+++++++|++|.+-|=
T Consensus 205 ~~e~L~~L~~~G~~rVslGVQS~~d~VL~~i-nRght~~~v~~Ai~~lr~~G~~v~~~LM 263 (522)
T TIGR01211 205 REEHIDRMLKLGATRVELGVQTIYNDILERT-KRGHTVRDVVEATRLLRDAGLKVVYHIM 263 (522)
T ss_pred CHHHHHHHHHcCCCEEEEECccCCHHHHHHh-CCCCCHHHHHHHHHHHHHcCCeEEEEee
Confidence 467899999999999999873 11 22222 4557788888999999999998764443
No 286
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=22.71 E-value=1.5e+02 Score=28.31 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEE
Q 009981 101 QSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRAL 153 (521)
Q Consensus 101 ~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~v 153 (521)
.+...+|+.|++.|.|-.. | |.+. .=..+.+-++.++++||++-+.
T Consensus 13 i~w~~vk~~g~~fv~ikat----e--g~~~-~D~~f~~n~~~A~~aGl~~G~Y 58 (196)
T cd06416 13 STFQCLKNNGYSFAIIRAY----R--SNGS-FDPNSVTNIKNARAAGLSTDVY 58 (196)
T ss_pred hhhhHHHhCCceEEEEEEE----c--cCCc-cChHHHHHHHHHHHcCCccceE
Confidence 5778899999999999864 2 2222 3367889999999999999644
No 287
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=22.65 E-value=1.2e+02 Score=30.13 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=29.2
Q ss_pred cCCCcccccchHHHHHHHHHHC-CCcEEEEEeeeccCCCCCC
Q 009981 125 RDRPGVYDWRGYFDLIVLASNC-GLKVRALLAFHQCGSGPGD 165 (521)
Q Consensus 125 ~~~p~~Ydws~Y~~l~~mv~~~-GLKv~~vlsfHqCGGNVGD 165 (521)
++.++.++.+..+++++.+++. |.+++.| |. ||+.|+
T Consensus 14 ~~~~~~~~~~~l~~l~~~l~~l~g~~vvlV---hG-gg~~~~ 51 (252)
T cd04241 14 KDRPETIREENLERIARELAEAIDEKLVLV---HG-GGSFGH 51 (252)
T ss_pred CCCCCccCHHHHHHHHHHHHhccCCCEEEE---EC-CCcccC
Confidence 3457789999999999999998 9999755 64 555554
No 288
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=22.63 E-value=55 Score=25.56 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=21.5
Q ss_pred CCChHHHHHHHHHHHHHcCCCeecc
Q 009981 406 FSSPEGFLRQLLLAARICEIPLEGE 430 (521)
Q Consensus 406 ~s~Pe~Lv~Qv~~aa~~~Gv~~~GE 430 (521)
.-.|++|..+|...|...|-.++.|
T Consensus 9 lRlP~~l~~~lk~~A~~~gRS~NsE 33 (50)
T PF03869_consen 9 LRLPEELKEKLKERAEENGRSMNSE 33 (50)
T ss_dssp EECEHHHHHHHHHHHHHTTS-HHHH
T ss_pred eECCHHHHHHHHHHHHHhCCChHHH
Confidence 4579999999999999999988776
No 289
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=22.49 E-value=2.5e+02 Score=27.99 Aligned_cols=63 Identities=14% Similarity=0.086 Sum_probs=46.8
Q ss_pred eeecceecCCCeecCHHHHHHHHHHHH-----HcCCc----eEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 81 KLPEDSTMIGGKVKRRKAMAQSFKALA-----AAGVE----GVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 81 MlPLd~v~~~~~v~~~~~~~~dL~~LK-----~aGVd----gV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
++|-+.|. ++.+.|-++.+.-|+.|+ .+|.. .|.|+.++..+|+ +.+.+.++.+||++.
T Consensus 25 ~~~~~~~~-~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r-----------~a~~~a~~~aGl~~~ 92 (239)
T TIGR02529 25 MQFADVVR-DGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDP-----------KVIVNVIESAGIEVL 92 (239)
T ss_pred eccccccc-CCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccH-----------HHHHHHHHHcCCceE
Confidence 34444443 578999999999999998 34553 5677778877766 578899999999997
Q ss_pred EEEe
Q 009981 152 ALLA 155 (521)
Q Consensus 152 ~vls 155 (521)
.++.
T Consensus 93 ~li~ 96 (239)
T TIGR02529 93 HVLD 96 (239)
T ss_pred EEee
Confidence 6655
No 290
>PRK03705 glycogen debranching enzyme; Provisional
Probab=22.16 E-value=8.4e+02 Score=28.54 Aligned_cols=53 Identities=19% Similarity=0.299 Sum_probs=35.5
Q ss_pred HHHHHHHcCCceEEEe-ee----------------eee-----eecCCCccccc------chHHHHHHHHHHCCCcEEEE
Q 009981 102 SFKALAAAGVEGVVVE-VW----------------WGV-----VERDRPGVYDW------RGYFDLIVLASNCGLKVRAL 153 (521)
Q Consensus 102 dL~~LK~aGVdgV~vd-Vw----------------WG~-----VE~~~p~~Ydw------s~Y~~l~~mv~~~GLKv~~v 153 (521)
-|..||++||+.|.+- |+ ||. ..+ +..|-= ..++++++.+.++||+|+.=
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~--d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlD 261 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFAL--DPAYASGPETALDEFRDAVKALHKAGIEVILD 261 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccc--ccccCCCCcchHHHHHHHHHHHHHCCCEEEEE
Confidence 3899999999999762 22 331 111 111110 25899999999999999865
Q ss_pred Eee
Q 009981 154 LAF 156 (521)
Q Consensus 154 lsf 156 (521)
+-|
T Consensus 262 vV~ 264 (658)
T PRK03705 262 VVF 264 (658)
T ss_pred Ecc
Confidence 555
No 291
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=22.10 E-value=2.3e+02 Score=36.13 Aligned_cols=96 Identities=15% Similarity=0.136 Sum_probs=60.3
Q ss_pred eeecceecCCCee----cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCccc-----------------ccchHHHH
Q 009981 81 KLPEDSTMIGGKV----KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVY-----------------DWRGYFDL 139 (521)
Q Consensus 81 MlPLd~v~~~~~v----~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Y-----------------dws~Y~~l 139 (521)
-|||+.|+.-..| -+-+.|++.|..+|++|++.|.+.=-=-+=+ +.-.| .+..++++
T Consensus 112 ~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~--SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~l 189 (1464)
T TIGR01531 112 FLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGG--SNSCYSLYDQLQLNQHFKSQKDGKNDVQAL 189 (1464)
T ss_pred ccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCC--CCCCccccchhhcChhhcccCCcHHHHHHH
Confidence 5788777643222 2448899999999999999997643210001 11111 34557888
Q ss_pred HHHHHHC-CCcEEEEEeeeccCCCCCCCCccccChhhhhhhccCCCeeeeCCC
Q 009981 140 IVLASNC-GLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRF 191 (521)
Q Consensus 140 ~~mv~~~-GLKv~~vlsfHqCGGNVGDt~~ipLP~WV~~~~~k~PDI~~tD~~ 191 (521)
++.+++. ||+++.=.=|.- |..==.|+.+ +||-.|...+
T Consensus 190 V~~~h~~~Gm~~ilDvV~NH---------Ta~ds~Wl~e----HPEa~Yn~~~ 229 (1464)
T TIGR01531 190 VEKLHRDWNVLSITDIVFNH---------TANNSPWLLE----HPEAAYNCIT 229 (1464)
T ss_pred HHHHHHhcCCEEEEEeeecc---------cccCCHHHHh----ChHhhcCCCC
Confidence 8888885 999974444422 3333468876 7887776643
No 292
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=21.89 E-value=1.2e+02 Score=31.57 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCCc-eEEEeeeee---eeecCCCcccccchHHHHHHHHHHCCCcEEEEEe
Q 009981 100 AQSFKALAAAGVE-GVVVEVWWG---VVERDRPGVYDWRGYFDLIVLASNCGLKVRALLA 155 (521)
Q Consensus 100 ~~dL~~LK~aGVd-gV~vdVwWG---~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vls 155 (521)
++.|+.||++|++ .|.+++==+ +++..=-..++.+-+.+.+++++++|+++.+.|=
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~i 176 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYLL 176 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEEE
Confidence 6778889999998 788875310 1110012345778899999999999999875554
No 293
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=21.88 E-value=1.9e+02 Score=26.41 Aligned_cols=55 Identities=11% Similarity=0.111 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 95 ~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
..+...+..+..+++|+++|++..-++..- .+..+--.+.|+++.+.+ +.++.++
T Consensus 63 ~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~-~~~~~~~~~~~~~i~~~~-~~~~pv~ 117 (201)
T cd00945 63 TTEVKVAEVEEAIDLGADEIDVVINIGSLK-EGDWEEVLEEIAAVVEAA-DGGLPLK 117 (201)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeccHHHHh-CCCHHHHHHHHHHHHHHh-cCCceEE
Confidence 357778888999999999999975543221 111122233444444443 3488775
No 294
>PRK15452 putative protease; Provisional
Probab=21.81 E-value=1e+02 Score=34.18 Aligned_cols=37 Identities=11% Similarity=0.244 Sum_probs=0.0
Q ss_pred CcceEEeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEE
Q 009981 75 GSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVV 116 (521)
Q Consensus 75 ~vpv~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~v 116 (521)
+++|||.+| -.+.+ .+-+.+.+.|+.++++|||||.|
T Consensus 59 g~kvyvt~n-~i~~e----~el~~~~~~l~~l~~~gvDgvIV 95 (443)
T PRK15452 59 GKKFYVVVN-IAPHN----AKLKTFIRDLEPVIAMKPDALIM 95 (443)
T ss_pred CCEEEEEec-CcCCH----HHHHHHHHHHHHHHhCCCCEEEE
No 295
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=21.81 E-value=1.7e+02 Score=28.85 Aligned_cols=56 Identities=16% Similarity=0.161 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEe
Q 009981 97 KAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLA 155 (521)
Q Consensus 97 ~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vls 155 (521)
...+-+...|+..||.||.+|.==-+|+ . ++.+.=....+-++-++++|+||. |.|
T Consensus 14 tv~~i~~~~L~~~Gikgvi~DlDNTLv~-w-d~~~~tpe~~~W~~e~k~~gi~v~-vvS 69 (175)
T COG2179 14 TVFDITPDILKAHGIKGVILDLDNTLVP-W-DNPDATPELRAWLAELKEAGIKVV-VVS 69 (175)
T ss_pred hHhhCCHHHHHHcCCcEEEEeccCceec-c-cCCCCCHHHHHHHHHHHhcCCEEE-EEe
Confidence 4455677889999999999996433332 1 233333567788999999999997 666
No 296
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=21.69 E-value=5.4e+02 Score=25.07 Aligned_cols=106 Identities=11% Similarity=0.180 Sum_probs=61.2
Q ss_pred HHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccChhhhhhhcc
Q 009981 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDK 181 (521)
Q Consensus 102 dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~WV~~~~~k 181 (521)
|..++|..||+.|.|=. -| ...|-=..|.+-.+-++++||++=+.-=|+.|. ++. .-=.++.+..++
T Consensus 21 Dw~~v~~~gi~Fv~iKA----TE---G~~~~D~~f~~n~~~A~~~Gl~vGaYHf~~~~~-----~~~-~QA~~F~~~v~~ 87 (190)
T cd06419 21 DFNSLQSNGISFVYLRA----TQ---GASYFDDNFLSNFSRAQGTGLSVGVIHTFSFSS-----TAA-AQYRYFIRKVGN 87 (190)
T ss_pred CHHHHHhCCCeEEEEEe----ec---CCCccChhHHHHHHHHHHCCCCEEEEEEeecCC-----CHH-HHHHHHHHhCCC
Confidence 56678889999999964 22 334667789999999999999996443233332 111 111233332221
Q ss_pred CCCeeeeCCCCcccccccccccCcccccCCC--CchHHHHHHHHHHHHHHhHhhhh
Q 009981 182 DPDLAYSDRFGRRNMEYISLGCDILPVLRGR--SPIQAYTDFMRNFRDTFRPLLGA 235 (521)
Q Consensus 182 ~PDI~~tD~~G~r~~EclSlg~D~~pv~~GR--Tpi~~Y~dfm~sF~~~fa~~~g~ 235 (521)
++ ..|-..+|-+ ..|. -......+.++.|.+.+.++.|.
T Consensus 88 ~~-------------~~lp~vlD~E--~~~~~~~~~~~~~~~~~~fl~~ve~~~g~ 128 (190)
T cd06419 88 NT-------------GNLPIAIYVS--YYGDYNPDTKKSTQKLGLLVQLLEQHYNQ 128 (190)
T ss_pred CC-------------CCCCeEEEEe--cCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 11 1111111111 0121 02378889999999999988764
No 297
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=21.68 E-value=2.3e+02 Score=25.96 Aligned_cols=45 Identities=20% Similarity=0.147 Sum_probs=39.0
Q ss_pred CCChHHHHHHHhHcCcEEEEeecccccCCcCCCCCCCChHHHHHHHHHHHHHcCCCe
Q 009981 371 RDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPL 427 (521)
Q Consensus 371 rdGY~~Ia~mf~r~~~~l~fTclEM~d~e~p~~~~~s~Pe~Lv~Qv~~aa~~~Gv~~ 427 (521)
.-|+..+.+.+++..+.|.|-+- .++|.++...+...|+++||++
T Consensus 32 v~G~~~v~kaikkgkakLVilA~------------D~s~~~i~~~~~~lc~~~~Vp~ 76 (122)
T PRK04175 32 KKGTNETTKAVERGIAKLVVIAE------------DVDPEEIVAHLPLLCEEKKIPY 76 (122)
T ss_pred eEcHHHHHHHHHcCCccEEEEeC------------CCChHHHHHHHHHHHHHcCCCE
Confidence 35788999999999999999854 3678888999999999999996
No 298
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=21.55 E-value=1.4e+02 Score=29.73 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccc--cchHHHHHHHHHHCCCcEE
Q 009981 97 KAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYD--WRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 97 ~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Yd--ws~Y~~l~~mv~~~GLKv~ 151 (521)
+.++..++..+.+|++.|.+.-.....++..+..++ -+.++++++++++.|+++.
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~ 150 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLA 150 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 458889999999999998763211001111111122 2456799999999999875
No 299
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=21.39 E-value=3.1e+02 Score=26.90 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=40.5
Q ss_pred ceecCCCeec-CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccC
Q 009981 85 DSTMIGGKVK-RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCG 160 (521)
Q Consensus 85 d~v~~~~~v~-~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCG 160 (521)
-+...+|... +.+...+=|+.+-..|++.|.|+..+ +-..++++.+++.|.||+ +|+|.=.
T Consensus 63 R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~vDiEl~~-------------~~~~~~~~~~~~~~~kiI--~S~H~f~ 124 (225)
T cd00502 63 RTKSEGGNFEGSEEEYLELLEEALKLGPDYVDIELDS-------------ALLEELINSRKKGNTKII--GSYHDFS 124 (225)
T ss_pred cccccCCCcCCCHHHHHHHHHHHHHHCCCEEEEEecc-------------hHHHHHHHHHHhCCCEEE--EEeccCC
Confidence 3344555443 23333344666667789999887654 347788888888999985 9999544
No 300
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=21.33 E-value=2.8e+02 Score=29.79 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=0.0
Q ss_pred CcceEEeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCC--CcEEE
Q 009981 75 GSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCG--LKVRA 152 (521)
Q Consensus 75 ~vpv~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~G--LKv~~ 152 (521)
++++||.+=.=..+ ...+.|.+.|+.|.++|||+|.+.-- -++.++++.+ |.++
T Consensus 62 gkk~~V~~N~~~~~-----~~~~~~~~~l~~l~e~GvDaviv~Dp------------------g~i~l~~e~~p~l~ih- 117 (347)
T COG0826 62 GKKVYVAVNTLLHN-----DELETLERYLDRLVELGVDAVIVADP------------------GLIMLARERGPDLPIH- 117 (347)
T ss_pred CCeEEEEecccccc-----chhhHHHHHHHHHHHcCCCEEEEcCH------------------HHHHHHHHhCCCCcEE-
Q ss_pred EEeeeccCCC
Q 009981 153 LLAFHQCGSG 162 (521)
Q Consensus 153 vlsfHqCGGN 162 (521)
.|+..---|
T Consensus 118 -~S~q~~v~N 126 (347)
T COG0826 118 -VSTQANVTN 126 (347)
T ss_pred -EeeeEecCC
No 301
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=21.27 E-value=67 Score=32.77 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=27.0
Q ss_pred ccccchHHHHHHHHHHCCCcEEEEEeeeccCCCC
Q 009981 130 VYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGP 163 (521)
Q Consensus 130 ~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNV 163 (521)
..+.+.+++++..+.+.|+.|++|.| -++++|+
T Consensus 192 ~m~~~~l~~iI~~l~~~g~~VvAivs-D~g~~N~ 224 (236)
T PF12017_consen 192 SMDADILKNIIEKLHEIGYNVVAIVS-DMGSNNI 224 (236)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEEC-CCCcchH
Confidence 56788999999999999999999998 3444443
No 302
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.15 E-value=1.2e+02 Score=32.50 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 99 MAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 99 ~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
+.+.|+.++..|+++|..+. |.++-.... +.. -..++++.++++||+|+
T Consensus 247 ~~~~l~~i~a~~a~~i~P~~-~~l~~~~~~--~~~-~~~~~v~~Ah~~GL~V~ 295 (356)
T cd08560 247 WSPSMDELKARGVNIIAPPI-WMLVDPDEN--GKI-VPSEYAKAAKAAGLDII 295 (356)
T ss_pred HHHHHHHHHhCCccEecCch-hhccccccc--ccc-CCHHHHHHHHHcCCEEE
Confidence 55778888889999765533 444432222 222 56789999999999997
No 303
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=21.03 E-value=82 Score=32.19 Aligned_cols=30 Identities=13% Similarity=0.377 Sum_probs=24.7
Q ss_pred CCeecCHHHHHHHHHHHHHcCCceEEEeeee
Q 009981 90 GGKVKRRKAMAQSFKALAAAGVEGVVVEVWW 120 (521)
Q Consensus 90 ~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwW 120 (521)
++++..+..++.-.++|+ .|+..|++|||=
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcR~vElD~wd 52 (229)
T cd08627 23 GDQFSSESSLEAYARCLR-MGCRCIELDCWD 52 (229)
T ss_pred CCccCCcccHHHHHHHHH-hCCCEEEEEeec
Confidence 456777778887777887 999999999993
No 304
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=20.98 E-value=2.5e+02 Score=29.62 Aligned_cols=64 Identities=23% Similarity=0.282 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccChh
Q 009981 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQW 174 (521)
Q Consensus 95 ~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~W 174 (521)
+.+...+.|+.+|++|+.. +||.. |.-+-= -=..+.++.++.|+.|++.=.||. ..-.|.|
T Consensus 36 ~~~~~~~El~~~k~~Gg~t--------iVd~T-~~g~GR-d~~~l~~is~~tGv~II~~TG~y~---------~~~~p~~ 96 (308)
T PF02126_consen 36 DVEAAVAELKEFKAAGGRT--------IVDAT-PIGLGR-DVEALREISRRTGVNIIASTGFYK---------EPFYPEW 96 (308)
T ss_dssp HHHHHHHHHHHHHHTTEEE--------EEE---SGGGTB--HHHHHHHHHHHT-EEEEEEEE-S---------GGCSCHH
T ss_pred hHHHHHHHHHHHHHcCCCE--------EEecC-CcccCc-CHHHHHHHHHHhCCeEEEeCCCCc---------cccCChh
Confidence 7789999999999999876 45544 322211 126778888999999986666652 2346788
Q ss_pred hhh
Q 009981 175 VLE 177 (521)
Q Consensus 175 V~~ 177 (521)
+.+
T Consensus 97 ~~~ 99 (308)
T PF02126_consen 97 VRE 99 (308)
T ss_dssp HHT
T ss_pred hhc
Confidence 866
No 305
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=20.79 E-value=74 Score=32.89 Aligned_cols=40 Identities=25% Similarity=0.335 Sum_probs=27.3
Q ss_pred CCCCcceEEeeecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeee
Q 009981 72 RRNGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWW 120 (521)
Q Consensus 72 ~~~~vpv~VMlPLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwW 120 (521)
..|+.|-| ..+++.| -+.-.+|+++|.+.|||||+|.-++
T Consensus 12 pLPGsP~~-~~~~~~i--------~e~A~~ea~~l~~~GvD~viveN~~ 51 (257)
T TIGR00259 12 PLPGSPSF-DDNLNAV--------IDKAWKDAMALEEGGVDAVMFENFF 51 (257)
T ss_pred CCCCCCCC-CCCHHHH--------HHHHHHHHHHHHhCCCCEEEEecCC
Confidence 34566666 4444422 2456789999999999999985543
No 306
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=20.78 E-value=1.5e+02 Score=30.29 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=44.2
Q ss_pred HHHHHHHHH---HcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCC-----CCCCCCccc
Q 009981 99 MAQSFKALA---AAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGS-----GPGDPKWVP 170 (521)
Q Consensus 99 ~~~dL~~LK---~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGG-----NVGDt~~ip 170 (521)
++.++++|| +||++.+..-. .||-..|.++++.+++.|+.+-++.+.---.+ ..-..|.|.
T Consensus 158 ~~~~~~~l~~Ki~aGA~f~iTQ~-----------~fd~~~~~~~~~~~~~~g~~~pIi~GI~p~~s~~~~~~~~~~~Gv~ 226 (287)
T PF02219_consen 158 FEAELKRLKKKIDAGADFIITQP-----------FFDAEAFERFLDRLREAGIDVPIIPGIMPLTSAKSARFLAKLCGVD 226 (287)
T ss_dssp HHHHHHHHHHHHHTTESEEEEEE------------SSHHHHHHHHHHHHHTTHTSEEEEEEE-HCCHHHHHHHHHHHT-E
T ss_pred HHHHHHHHHHHHHCCCCEEeccc-----------cCCHHHHHHHHHHHHHcCCCCcEEEEEeccCCHHHHHHHHhccCcc
Confidence 666777665 48999876533 38999999999999999984433333210000 000013477
Q ss_pred cChhhhhhhc
Q 009981 171 LPQWVLEEID 180 (521)
Q Consensus 171 LP~WV~~~~~ 180 (521)
+|.|+.+..+
T Consensus 227 iP~~~~~~l~ 236 (287)
T PF02219_consen 227 IPDELIERLE 236 (287)
T ss_dssp EEHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 8999998655
No 307
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=20.66 E-value=1.5e+02 Score=31.27 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCceEEEeee-ee-eeecCCCcccccchHHHHHHHHHHCCCc
Q 009981 100 AQSFKALAAAGVEGVVVEVW-WG-VVERDRPGVYDWRGYFDLIVLASNCGLK 149 (521)
Q Consensus 100 ~~dL~~LK~aGVdgV~vdVw-WG-~VE~~~p~~Ydws~Y~~l~~mv~~~GLK 149 (521)
++.|+.||++||+-|.|+|= -. .+-+.-....+.....+.+++++++|++
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~ 149 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFE 149 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 68899999999999999874 21 1111113357888999999999999997
No 308
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=20.62 E-value=87 Score=27.21 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=41.9
Q ss_pred ecceecCCCeecCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEE
Q 009981 83 PEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 83 PLd~v~~~~~v~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~ 151 (521)
+.|+|-+. ...+...+-+...=+.|++.|+.+. ++.- |...|++|.++++++|.++.
T Consensus 59 ~~dvvVE~---t~~~~~~~~~~~~L~~G~~VVt~nk--------~ala-~~~~~~~L~~~A~~~g~~~~ 115 (117)
T PF03447_consen 59 DIDVVVEC---TSSEAVAEYYEKALERGKHVVTANK--------GALA-DEALYEELREAARKNGVRIY 115 (117)
T ss_dssp T-SEEEE----SSCHHHHHHHHHHHHTTCEEEES-H--------HHHH-SHHHHHHHHHHHHHHT-EEE
T ss_pred CCCEEEEC---CCchHHHHHHHHHHHCCCeEEEECH--------HHhh-hHHHHHHHHHHHHHcCCEEE
Confidence 55666543 4456677767777779999999875 4677 89999999999999998874
No 309
>PRK05660 HemN family oxidoreductase; Provisional
Probab=20.60 E-value=1.5e+02 Score=31.56 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCC-------cccccchHHHHHHHHHHCCCcE
Q 009981 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRP-------GVYDWRGYFDLIVLASNCGLKV 150 (521)
Q Consensus 95 ~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p-------~~Ydws~Y~~l~~mv~~~GLKv 150 (521)
+...-.+.|+.||++||+.|.|+| |.-.| +..+..--.+.+++++++|++.
T Consensus 102 p~~l~~e~l~~Lk~~Gv~risiGv-----qS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~ 159 (378)
T PRK05660 102 PGTVEADRFVGYQRAGVNRISIGV-----QSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRS 159 (378)
T ss_pred cCcCCHHHHHHHHHcCCCEEEecc-----CcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCe
Confidence 333445889999999999999986 33222 3456778888999999999975
No 310
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=20.56 E-value=5.5e+02 Score=25.27 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=45.1
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccc---------hHHHHHHHHHHCCCcEEEEEeeeccCCCCC
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWR---------GYFDLIVLASNCGLKVRALLAFHQCGSGPG 164 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws---------~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVG 164 (521)
.....|...|+...+.||+.|.+- ||..... +..|.|. .+.+.++.+.+.|+=+ |.+ -||-|
T Consensus 88 ~~~~~~~~ai~~a~~~~v~VIn~S--~G~~~~~-~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilv--v~A----AGN~g 158 (261)
T cd07493 88 VEEDNWVAAAEWADSLGVDIISSS--LGYTTFD-NPTYSYTYADMDGKTSFISRAANIAASKGMLV--VNS----AGNEG 158 (261)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEeC--CCcCCCC-CcccccccccccccchHHHHHHHHHHhCCeEE--EEE----CCCCC
Confidence 355677788888889999887544 7766544 2222233 3557788888887644 455 37777
Q ss_pred CCC--ccccCh
Q 009981 165 DPK--WVPLPQ 173 (521)
Q Consensus 165 Dt~--~ipLP~ 173 (521)
... .+..|.
T Consensus 159 ~~~~~~~~~Pa 169 (261)
T cd07493 159 STQWKGIGAPA 169 (261)
T ss_pred CCCCCcccCcc
Confidence 653 444454
No 311
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=20.54 E-value=4.1e+02 Score=27.59 Aligned_cols=80 Identities=20% Similarity=0.228 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCCceEEEeee-eeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCcc--ccChh
Q 009981 98 AMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWV--PLPQW 174 (521)
Q Consensus 98 ~~~~dL~~LK~aGVdgV~vdVw-WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~i--pLP~W 174 (521)
+.++=-+..++.|+.||-+--+ ++.-... +. |..+++.+.++|+-|+ + |--.+-.+...+. ..|.=
T Consensus 114 a~~E~er~v~~~gf~g~~l~p~~~~~~~~~-~~------~~pi~~~a~~~gvpv~--i--htG~~~~~~~~~~~~~~p~~ 182 (293)
T COG2159 114 AAEELERRVRELGFVGVKLHPVAQGFYPDD-PR------LYPIYEAAEELGVPVV--I--HTGAGPGGAGLEKGHSDPLY 182 (293)
T ss_pred HHHHHHHHHHhcCceEEEecccccCCCCCC-hH------HHHHHHHHHHcCCCEE--E--EeCCCCCCcccccCCCCchH
Confidence 4444455556799999998544 6665543 22 8999999999999997 3 5322222222222 56666
Q ss_pred hhhhhccCCCeeee
Q 009981 175 VLEEIDKDPDLAYS 188 (521)
Q Consensus 175 V~~~~~k~PDI~~t 188 (521)
+.++.++.|++-++
T Consensus 183 ~~~va~~fP~l~IV 196 (293)
T COG2159 183 LDDVARKFPELKIV 196 (293)
T ss_pred HHHHHHHCCCCcEE
Confidence 77777888886543
No 312
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=20.54 E-value=2.3e+02 Score=27.07 Aligned_cols=107 Identities=15% Similarity=0.078 Sum_probs=61.6
Q ss_pred HHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEeeeccCCCCCCCCccccChhhhhhhcc
Q 009981 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDK 181 (521)
Q Consensus 102 dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsfHqCGGNVGDt~~ipLP~WV~~~~~k 181 (521)
|+.+||+.||++|.|=+.-| - .|.=..|.+-++-++++||++-+..=++.+. +. ..-=.++.+..++
T Consensus 16 d~~~vk~~gi~fviiKateG------~-~~~D~~~~~~~~~a~~~Gl~vG~Yhy~~~~~-----~~-~~qA~~f~~~~~~ 82 (191)
T cd06413 16 DWARVRAQGVSFAYIKATEG------G-DHVDKRFAENWRGARAAGLPRGAYHFFTFCR-----SG-AEQAANFIRNVPK 82 (191)
T ss_pred CHHHHHhCCCcEEEEEEcCC------C-CccCHHHHHHHHHHHHcCCceEEEEEEecCC-----CH-HHHHHHHHHhcCC
Confidence 68888999999999987522 1 3555788889999999999986554333322 11 1111233332221
Q ss_pred CCCeeeeCCCCcccccccccccCcccccCC--CCchHHHHHHHHHHHHHHhHhhh
Q 009981 182 DPDLAYSDRFGRRNMEYISLGCDILPVLRG--RSPIQAYTDFMRNFRDTFRPLLG 234 (521)
Q Consensus 182 ~PDI~~tD~~G~r~~EclSlg~D~~pv~~G--RTpi~~Y~dfm~sF~~~fa~~~g 234 (521)
+ ..-+-+++|-+..-.. ........+.++.|.+++.+..|
T Consensus 83 ~-------------~~~~~~~lD~E~~~~~~~~~~~~~~~~~~~~f~~~v~~~~G 124 (191)
T cd06413 83 D-------------PGALPPVVDVEWNGNSATCPSAEEVLAELQVFLDALEAHYG 124 (191)
T ss_pred C-------------CCcCCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 1 1112223443321111 11235677888888888887665
No 313
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=20.47 E-value=2e+02 Score=30.99 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=37.8
Q ss_pred cCHHHHHHHHHHHHHcCCceEEEeee---eeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEee
Q 009981 94 KRRKAMAQSFKALAAAGVEGVVVEVW---WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAF 156 (521)
Q Consensus 94 ~~~~~~~~dL~~LK~aGVdgV~vdVw---WG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vlsf 156 (521)
.+......--|+|.+.||+||.|+-= --++.++ .-..+.+|++..|..||||-..+.|
T Consensus 54 ~~~~R~~~YARllASiGINgvvlNNVNa~~~~Lt~~-----~l~~v~~lAdvfRpYGIkv~LSvnF 114 (328)
T PF07488_consen 54 RDLTRYRDYARLLASIGINGVVLNNVNANPKLLTPE-----YLDKVARLADVFRPYGIKVYLSVNF 114 (328)
T ss_dssp S--HHHHHHHHHHHHTT--EEE-S-SS--CGGGSTT-----THHHHHHHHHHHHHTT-EEEEEE-T
T ss_pred cchhHHHHHHHHHhhcCCceEEecccccChhhcCHH-----HHHHHHHHHHHHhhcCCEEEEEeec
Confidence 45578888999999999999998743 2333333 3457889999999999999844444
No 314
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=20.47 E-value=1.4e+02 Score=35.03 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHH--HHHHHHcCCceEEE-eee---eeeeecCCCcccccc------------------------hHHHHHHHHHHCC
Q 009981 98 AMAQS--FKALAAAGVEGVVV-EVW---WGVVERDRPGVYDWR------------------------GYFDLIVLASNCG 147 (521)
Q Consensus 98 ~~~~d--L~~LK~aGVdgV~v-dVw---WG~VE~~~p~~Ydws------------------------~Y~~l~~mv~~~G 147 (521)
++.+. |..||++||..|.+ +|+ +........-.|+|. .++++++-+.++|
T Consensus 199 gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaG 278 (697)
T COG1523 199 GLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAG 278 (697)
T ss_pred hhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcC
Q ss_pred CcEEEEE
Q 009981 148 LKVRALL 154 (521)
Q Consensus 148 LKv~~vl 154 (521)
|-|| |
T Consensus 279 I~VI--L 283 (697)
T COG1523 279 IEVI--L 283 (697)
T ss_pred CEEE--E
No 315
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=20.32 E-value=1.7e+02 Score=32.27 Aligned_cols=50 Identities=16% Similarity=0.245 Sum_probs=37.3
Q ss_pred HHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCCcEEEEEe
Q 009981 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLA 155 (521)
Q Consensus 102 dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GLKv~~vls 155 (521)
.|+.+|++||+||...--- + |. ....+-....++-+++.++||++-||=|
T Consensus 15 ~l~~irQ~G~~giV~al~~-~--p~-gevW~~~~i~~~k~~ie~~GL~~~vvEs 64 (394)
T TIGR00695 15 SLEDVRQAGATGIVTALHH-I--PN-GEVWEKEEIRKRKEYIESAGLHWSVVES 64 (394)
T ss_pred hHHHHhhcCCcceeecCCC-C--CC-CCCCCHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4778899999999865420 0 22 2345666788899999999999998777
No 316
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=20.27 E-value=1.4e+02 Score=29.53 Aligned_cols=56 Identities=7% Similarity=0.015 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccc--cchHHHHHHHHHHCCCcEE
Q 009981 96 RKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYD--WRGYFDLIVLASNCGLKVR 151 (521)
Q Consensus 96 ~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Yd--ws~Y~~l~~mv~~~GLKv~ 151 (521)
.+.+++.++..+.+|+..|.+.-+..-.+...+..+. -+.++++.+++++.|+++.
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~ 146 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLI 146 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3577788899999999999774432111111122222 2468899999999998864
No 317
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=20.20 E-value=2e+02 Score=31.10 Aligned_cols=82 Identities=15% Similarity=0.212 Sum_probs=59.6
Q ss_pred CCCCCcceEEeeecceecC--CC-eecC---------HHHHHHHHHHHHHcCCceEEEeee-eeeeecCCCcccccchHH
Q 009981 71 GRRNGSPVFVKLPEDSTMI--GG-KVKR---------RKAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGYF 137 (521)
Q Consensus 71 ~~~~~vpv~VMlPLd~v~~--~~-~v~~---------~~~~~~dL~~LK~aGVdgV~vdVw-WG~VE~~~p~~Ydws~Y~ 137 (521)
..+.+|++-|+-|...... +. ...+ .+.+++.++.|+.+||..|.||+- +|.-= +-+|+-++-.
T Consensus 108 ~~~~~VKv~iTGP~tL~~~~f~~~~Y~d~~~~la~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~---~~~~~~~~~i 184 (344)
T PRK06052 108 GETLEVRVCVTGPTELYLQEFGGTIYTDILLILAKSVERFVENAIKSAKNFKIKTISIDEPSLGINP---EIQFSDDEII 184 (344)
T ss_pred CCCCCeEEEecCHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcccccCC---ccccCHHHHH
Confidence 4556899999999976642 11 2233 346778888999999999999998 87632 2357777777
Q ss_pred HHHHHH----HHCCCcEEEEEeee
Q 009981 138 DLIVLA----SNCGLKVRALLAFH 157 (521)
Q Consensus 138 ~l~~mv----~~~GLKv~~vlsfH 157 (521)
+.++.+ +..|++++ ++.|
T Consensus 185 ~Al~~a~~~a~~~gvdv~--i~lH 206 (344)
T PRK06052 185 SALTVASTYARKQGADVE--IHLH 206 (344)
T ss_pred HHHHHHHhhhccCCcceE--EEEe
Confidence 777776 55689998 6666
No 318
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=20.11 E-value=5.1e+02 Score=27.31 Aligned_cols=80 Identities=13% Similarity=0.175 Sum_probs=52.2
Q ss_pred ceEEeeecceecCC--Cee------cCHHHHHHHHHHHHHcCCceEEEeeeeeeeecCCCcccccchHHHHHHHHHHCCC
Q 009981 77 PVFVKLPEDSTMIG--GKV------KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGL 148 (521)
Q Consensus 77 pv~VMlPLd~v~~~--~~v------~~~~~~~~dL~~LK~aGVdgV~vdVwWG~VE~~~p~~Ydws~Y~~l~~mv~~~GL 148 (521)
+-.|.+-||..+.. ..+ ...+.+.+.|+.|++.|+..+ |- .-+|-+ +|-..-.++++++++.|.
T Consensus 180 ~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L~~l~~~~~~~~-ir--~tlv~g-----~Nd~e~~~~a~l~~~~~~ 251 (322)
T PRK13762 180 PTQLYVSLDAPDEETYKKINRPVIPDAWERILETLELLPSKKTRTV-IR--ITLVKG-----YNMHDPEGFAKLIERANP 251 (322)
T ss_pred CCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHHHHHHhCCCCEE-EE--EEEECC-----cCccHHHHHHHHHHHcCC
Confidence 34566666665421 112 356788888999999886432 11 122322 233334489999999999
Q ss_pred cEEEEEeeeccCCCCC
Q 009981 149 KVRALLAFHQCGSGPG 164 (521)
Q Consensus 149 Kv~~vlsfHqCGGNVG 164 (521)
+.+-|+.||.+|.+-+
T Consensus 252 ~~Iel~~y~~~G~~k~ 267 (322)
T PRK13762 252 DFVEVKAYMHVGYSRN 267 (322)
T ss_pred CEEEEECCeECCCccc
Confidence 9989999999997643
Done!