BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>009983
MSSGNNSMHGLNNHRFQAKNSDFVNRHKIETHLAPTKQKEDNFISFQDREAMELYSRARM
QKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKG
VLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQI
RTSYDRIRDLTREGGTDAGAGSIDTVVLDRHGVPMHTPNAADRPEPTDNMPRTIHDDSHS
EMKNLLHNSQMQQLFNNDSSQGFSFGSNRENLGNVPNALDLRVARGPEEMNAWFPSTHNE
IASSISEGGPGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGAT
NPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGH
ATFSVLMLMDSSENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVL
TFSDGSSYPFSTYNVRMRDTLVLTMRMLQGKALDDKRKGRA

High Scoring Gene Products

Symbol, full name Information P value
AT3G03560 protein from Arabidopsis thaliana 8.0e-140
AT5G23490 protein from Arabidopsis thaliana 5.2e-64

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  009983
        (521 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2096434 - symbol:AT3G03560 species:3702 "Arabi...  1368  8.0e-140  1
TAIR|locus:2154468 - symbol:AT5G23490 "AT5G23490" species...   439  5.2e-64   2


>TAIR|locus:2096434 [details] [associations]
            symbol:AT3G03560 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0005886 "plasma membrane"
            evidence=IDA] GO:GO:0005886 EMBL:CP002686 IPI:IPI00548076
            RefSeq:NP_187006.2 UniGene:At.44334 ProteinModelPortal:F4J152
            PRIDE:F4J152 EnsemblPlants:AT3G03560.1 GeneID:821235
            KEGG:ath:AT3G03560 OMA:QSIEGAT Uniprot:F4J152
        Length = 521

 Score = 1368 (486.6 bits), Expect = 8.0e-140, P = 8.0e-140
 Identities = 286/517 (55%), Positives = 369/517 (71%)

Query:    19 KNSDFVNRHKIETHLAPTKQKED-NFISFQDREAMELYSRARMQKEEIHSLRQQIAVACL 77
             ++S+ + RH+IE     +++ ED N    QD E M LY++ R Q+EEIHSL+++IA ACL
Sbjct:     5 RSSESIKRHEIEKDTIASRKLEDTNTKLIQDPEEMALYAKVRSQEEEIHSLQERIAAACL 64

Query:    78 KELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAED 137
             K++QL NEKY LERK ++LR+AIDEKQNE++TSALNELARRKG LEENLKLAHDLKV ED
Sbjct:    65 KDMQLLNEKYGLERKCADLRVAIDEKQNESVTSALNELARRKGDLEENLKLAHDLKVTED 124

Query:   138 ERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTD 197
             ERY FM+S+LGLLA+YG+WP V NA+AIS+ +KHL+DQLQ + +   DRIR+L+      
Sbjct:   125 ERYIFMTSLLGLLAEYGVWPRVANATAISSGIKHLHDQLQWKTKACNDRIRELSSIVENQ 184

Query:   198 AGAGSIDTVVLD-RHGVPMHTPNAADRP---EPTDNMPRTIHDDSHSEMKNLLHNSQMQQ 253
              G   I     D R+     +  + DR    +  + +   + + + +   N++ +++  +
Sbjct:   185 PGTDFISKDNHDPRNSKTQASYGSTDRGNDYQTNEQLLPPMENVTRNPYHNIMQDTESLR 244

Query:   254 LFNND---SSQGFSFGSNRENLGNVPNAL---DLRVARGPEEMNAWFPSTHNXXXXXXXX 307
              FNN     SQG      REN G   +++   ++   R  +  N+     +N        
Sbjct:   245 -FNNQIGGGSQGIFPQPKRENFGYPLSSVAGKEMIQEREEKAENSSMFDAYNGNEEFASH 303

Query:   308 XXXXX---XXFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEY 364
                       FQIIG+A PGEK+LGCG+PVRGTTLCMFQWVRHL+DGTR YIEGAT+PEY
Sbjct:   304 VYEEGPGIDGFQIIGDAIPGEKVLGCGFPVRGTTLCMFQWVRHLEDGTRQYIEGATHPEY 363

Query:   365 VVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFS 424
             +VTADDVDKLIAVECIPMDDQGRQGELVR FANDQNKI+CD  MQ+EID YISRG A+F+
Sbjct:   364 IVTADDVDKLIAVECIPMDDQGRQGELVRLFANDQNKIRCDTEMQTEIDTYISRGQASFN 423

Query:   425 VLMLMDSSENWEQATLILRRSIYRIKIDSTEAI-IEERFPKEVSIKVPCGLSTQFVLTFS 483
             V +LMDSSE+WE AT++L+RS Y+IK ++TEA+ I E++ KE+ I+VP G STQFVL   
Sbjct:   424 VQLLMDSSESWEPATVVLKRSSYQIKTNTTEAVVISEKYSKELQIRVPSGESTQFVLISY 483

Query:   484 DGSSYPFSTYNVRMRDTLVLTMRMLQGKALDDKRKGR 520
             DGSS+P ST NVRMRDTLVLTMRMLQ KALD++RKGR
Sbjct:   484 DGSSHPISTLNVRMRDTLVLTMRMLQSKALDERRKGR 520


>TAIR|locus:2154468 [details] [associations]
            symbol:AT5G23490 "AT5G23490" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 IPI:IPI00529720 RefSeq:NP_197740.2
            UniGene:At.47222 ProteinModelPortal:F4KCX5
            EnsemblPlants:AT5G23490.1 GeneID:832415 KEGG:ath:AT5G23490
            OMA:ENGHEER Uniprot:F4KCX5
        Length = 729

 Score = 439 (159.6 bits), Expect = 5.2e-64, Sum P(2) = 5.2e-64
 Identities = 90/210 (42%), Positives = 129/210 (61%)

Query:   316 QIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLI 375
             QI GE  PG +L  CGY + GTT C F+WV HL+DG+ +YI+GA  P Y+VTADDVD  +
Sbjct:   514 QISGEPYPGHELQACGYSINGTTSCNFEWVCHLEDGSVNYIDGAKQPNYLVTADDVDLYL 573

Query:   376 AVECIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENW 435
             A+E  P+DD+ R+GELV+ FAND  KI C   MQS I+  +  GHA++ V + +   + W
Sbjct:   574 AIEVQPLDDRNRKGELVKVFANDNRKIACHPDMQSNIEKTLHTGHASYKVSLAVGFVDIW 633

Query:   436 EQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTYN- 494
             E ATL ++R  Y IK  S +  I E+F    ++ +P G   + V+  SDGS +     N 
Sbjct:   634 EAATLSIKREGYSIKCIS-DLTIAEKFSASTTVTIPFGQPAELVIIGSDGSEHSLRADNG 692

Query:   495 ----VRMRDTLVLTMRMLQGKALDDKRKGR 520
                 +  RD +VLT+R+   +AL  ++KG+
Sbjct:   693 SPDLIGSRDEIVLTLRLFIKRALQ-RKKGK 721

 Score = 243 (90.6 bits), Expect = 5.2e-64, Sum P(2) = 5.2e-64
 Identities = 44/137 (32%), Positives = 91/137 (66%)

Query:    53 ELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSAL 112
             +L  + + Q++EI  LR+ +    +KE Q++NEKY LE++++ +R+A D++Q + + ++ 
Sbjct:   205 DLIHKVQEQEQEISQLRRYLTDCSVKEAQIRNEKYVLEKRIAYMRLAFDQQQQDLVDASS 264

Query:   113 NELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHL 172
               L+ R+ ++EEN++L + L+  + ER  F+S +L LL++Y L P V++A +I + VK L
Sbjct:   265 KALSYRQEIIEENIRLTYALQATQQERSTFVSYLLPLLSEYSLQPQVSDAQSIVSNVKVL 324

Query:   173 YDQLQSQIRTSYDRIRD 189
             +  LQ ++  +  ++++
Sbjct:   325 FKHLQEKLLLTETKLKE 341

 Score = 37 (18.1 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query:   345 VRHLQDGTRHYIEGATNPEYVVTADD 370
             V+ L+  ++  ++ A NP Y    DD
Sbjct:   453 VQFLEPISKTVVDDAQNPSYGSAFDD 478


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      521       506   0.00086  119 3  11 22  0.40    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  296 KB (2155 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  50.06u 0.16s 50.22t   Elapsed:  00:00:02
  Total cpu time:  50.06u 0.16s 50.22t   Elapsed:  00:00:02
  Start:  Tue May 21 09:13:34 2013   End:  Tue May 21 09:13:36 2013

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