Query 009983
Match_columns 521
No_of_seqs 49 out of 51
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 17:18:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dix_A Plectin-related protein 99.9 2.9E-25 1E-29 212.0 18.0 187 315-509 15-210 (230)
2 3he5_B Synzip2; heterodimeric 53.5 11 0.00039 28.8 3.3 40 66-105 6-45 (52)
3 3o0z_A RHO-associated protein 45.7 1.2E+02 0.004 28.5 9.5 54 52-105 16-83 (168)
4 2q6q_A Spindle POLE BODY compo 44.5 31 0.0011 28.6 4.8 29 50-78 4-39 (74)
5 4f9p_D 103.2 anti-BTN3A1 antib 43.9 2.5E+02 0.0085 27.7 12.3 57 322-382 13-86 (254)
6 3mq7_A Bone marrow stromal ant 43.6 18 0.00062 32.4 3.6 41 56-96 71-111 (121)
7 2dfs_A Myosin-5A; myosin-V, in 39.9 73 0.0025 36.7 8.7 28 161-188 1020-1047(1080)
8 4hci_A Cupredoxin 1; structura 39.4 22 0.00075 28.5 3.2 32 461-493 24-55 (100)
9 3pl0_A Uncharacterized protein 37.8 67 0.0023 31.3 6.9 123 379-507 91-247 (254)
10 3oja_B Anopheles plasmodium-re 37.4 87 0.003 32.1 8.0 18 83-100 522-539 (597)
11 4e81_A Chaperone protein DNAK; 33.3 66 0.0023 30.2 5.9 31 85-115 173-203 (219)
12 2gtv_X CM, chorismate mutase; 33.0 1.3E+02 0.0046 25.6 7.3 75 64-138 4-103 (104)
13 3tnu_B Keratin, type II cytosk 32.9 77 0.0026 27.4 5.9 48 58-105 31-78 (129)
14 1i84_S Smooth muscle myosin he 32.4 96 0.0033 35.7 8.1 14 62-75 863-876 (1184)
15 2rlo_A Centaurin-gamma 1; spli 31.5 43 0.0015 27.6 3.9 41 473-513 87-127 (128)
16 2dfs_A Myosin-5A; myosin-V, in 31.4 1.4E+02 0.0047 34.5 9.2 18 57-74 985-1002(1080)
17 2l2l_B Methyl-CPG-binding doma 31.3 26 0.00088 25.7 2.1 21 57-77 11-31 (36)
18 3oja_B Anopheles plasmodium-re 31.1 11 0.00037 38.7 0.1 27 165-191 552-578 (597)
19 3dde_A TENA/THI-4 protein, dom 29.0 48 0.0017 30.5 4.2 52 93-144 179-236 (239)
20 3tnu_A Keratin, type I cytoske 28.5 57 0.002 28.4 4.3 49 58-106 33-81 (131)
21 1gk7_A Vimentin; intermediate 28.3 49 0.0017 24.1 3.2 34 62-95 5-38 (39)
22 3efg_A Protein SLYX homolog; x 28.2 78 0.0027 25.9 4.8 34 88-124 11-46 (78)
23 4h22_A Leucine-rich repeat fli 27.7 1.2E+02 0.0042 26.5 6.1 62 55-133 36-97 (103)
24 2etd_A LEMA protein; bromodoma 27.3 44 0.0015 30.8 3.5 48 132-191 75-123 (171)
25 3iyk_A VP5; icosahedral virus; 27.1 4.7E+02 0.016 28.4 11.6 116 41-181 82-206 (526)
26 4fla_A Regulation of nuclear P 26.1 1.7E+02 0.0059 26.5 7.2 110 18-146 37-147 (152)
27 1sf9_A YFHH hypothetical prote 25.6 75 0.0026 28.8 4.5 33 60-94 36-68 (128)
28 1nkw_E 50S ribosomal protein L 24.4 1.1E+02 0.0037 29.5 5.7 53 432-485 107-165 (212)
29 3kbt_A Beta-I spectrin, spectr 24.2 4.3E+02 0.015 24.4 14.0 130 47-189 34-169 (326)
30 3ol1_A Vimentin; structural ge 23.7 3.5E+02 0.012 23.2 9.6 37 62-105 19-55 (119)
31 4ani_A Protein GRPE; chaperone 22.4 5.2E+02 0.018 24.7 12.1 57 140-199 109-169 (213)
32 3hnw_A Uncharacterized protein 21.5 1.9E+02 0.0065 25.7 6.4 42 56-97 82-123 (138)
33 1iby_A Nitrosocyanin; RED copp 21.2 2E+02 0.0069 23.1 6.1 31 462-493 35-65 (112)
34 1m1j_B Fibrinogen beta chain; 21.2 4.6E+02 0.016 27.8 10.2 25 55-79 91-116 (464)
35 1u4q_A Spectrin alpha chain, b 20.8 5E+02 0.017 23.9 12.0 127 50-189 37-167 (322)
36 2lf0_A Uncharacterized protein 20.7 1E+02 0.0035 27.7 4.4 35 63-97 10-56 (123)
No 1
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=99.93 E-value=2.9e-25 Score=212.00 Aligned_cols=187 Identities=20% Similarity=0.296 Sum_probs=159.3
Q ss_pred ceeecccCCCcceeeecc--ccCCceeeeeEEEEEc-cCCceeeecCCCCCceeeeccccCceEEEEEEecCCCCcccce
Q 009983 315 FQIIGEATPGEKLLGCGY--PVRGTTLCMFQWVRHL-QDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGEL 391 (521)
Q Consensus 315 lqI~Gda~pG~~L~acGy--sinGTtlC~FqWvRhl-eDGs~~~IegA~~p~Y~vTADDVd~~iAvec~PmDd~grkGEl 391 (521)
+.+-|.-..|.-|+...- ..--.|+|+|||+|++ ++|+.+.|.||+.|.|.++++|||.+|++||+| .|+.
T Consensus 15 y~L~G~e~LGs~L~i~~~~~~~~dlS~CsiQW~R~~~egs~re~IsGAtk~~YAPeP~DVGrlLqadi~~------~G~k 88 (230)
T 4dix_A 15 YEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGATKSVYAPEPFDVGRVLHADIIY------DGHS 88 (230)
T ss_dssp EEEESCCBTTSCEEEEESSTTSCCGGGSEEEEEEECTTSSSEEECTTCCSSEECCCGGGBTSEEEEEEEE------TTEE
T ss_pred eeecchhhccceEEEEeccCCCCcccccceEEEEeecCCCceeEEeccccccccCCccccccEEEEEEec------CCcE
Confidence 345566677776654332 2334799999999999 889999999999999999999999999999998 3999
Q ss_pred eeeecccCCccccCccchHHHHHHHHhcceEEEEEeecCcccccc-ceeEEEeecceEEEeCC-CcceeeeecCCCceeE
Q 009983 392 VRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWE-QATLILRRSIYRIKIDS-TEAIIEERFPKEVSIK 469 (521)
Q Consensus 392 V~~~aNd~~kI~cDpeMq~~I~~~l~~G~Asf~V~l~~~~~d~wE-~atL~IrRegY~IK~~~-~~~~I~Ekfs~~~~Ik 469 (521)
|.+|+| +||+|||+|++.|++++.+|.+.|.|.++...-+.|+ ++++++.+-.++||-.. ..++++|+||++.++=
T Consensus 89 ~t~~T~--gpId~a~GL~~yVEaL~rk~~tEFNVvv~q~nG~d~~s~sihvl~vgk~RiKL~kg~~t~akE~YSssmQLC 166 (230)
T 4dix_A 89 LSLSTV--GKIDPAAGLGSYVEALVRKHDVDFNVVVTQMSGEDHTSESIHLFHVGKMRIKLCKGKTVIAKEYYSSAMQLC 166 (230)
T ss_dssp EEEEEE--EEBBCCTTHHHHHHHHHTTSEEEEEEEEEEETTEECCCCCEEEEEEESSEEEEEETTEEEEEEECCTTCEEE
T ss_pred EEEEec--CCCCCCchhHHHHHHHhhcCCCcEEEEEEEEcCccCccceEEEEEeccEEEEEecCceEEeeeeecccceee
Confidence 999999 9999999999999999999999999999965567888 99999999999999985 4499999999986654
Q ss_pred ecCC--C--cceEEEEecCCceeeeecCCCCCchhhHHHHHHHH
Q 009983 470 VPCG--L--STQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQ 509 (521)
Q Consensus 470 Ip~g--~--~~qfvi~~sdG~e~~Lr~~n~~~RD~iVLTlR~F~ 509 (521)
=-.| + +.-.+-.-.-|..+.|-++..|.|..+.+.-|-|-
T Consensus 167 GvRggg~aA~~AlfWq~rkgls~~L~fEseReRNaAImLARrfA 210 (230)
T 4dix_A 167 GVRGGGNAAAQALYWQAKKGVSFVIAFESERERNAAIMLARRFA 210 (230)
T ss_dssp ECSSCTTSGGGEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eccCCcccccceeeEeecCCcEEEEEeccchhhhhHHHHHHHHh
Confidence 3333 2 34455566889999999999999999999999984
No 2
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=53.52 E-value=11 Score=28.81 Aligned_cols=40 Identities=33% Similarity=0.423 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhh
Q 009983 66 HSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQN 105 (521)
Q Consensus 66 ~~Lrk~Lad~s~KE~Qil~EK~vLErriA~mR~A~DqqQq 105 (521)
.-|||+||..--.-+||-.+..-|||-||.||=-+-.-.+
T Consensus 6 aylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 4689999988888899999999999999999965544333
No 3
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=45.69 E-value=1.2e+02 Score=28.51 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=39.2
Q ss_pred hhHHHHhhccHHHHHHHHHHHHHHhhh---------h-----hhhhcchhhhHHHHhHHHHHHhHHhh
Q 009983 52 MELYSRARMQKEEIHSLRQQIAVACLK---------E-----LQLQNEKYTLERKVSELRMAIDEKQN 105 (521)
Q Consensus 52 ~~l~~~~re~EEEI~~Lrk~Lad~s~K---------E-----~Qil~EK~vLErriA~mR~A~DqqQq 105 (521)
.++=.+.|..=|--..|||.-++++.. | .+|-+.|-.||+-++.|.-+.++...
T Consensus 16 ~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~ 83 (168)
T 3o0z_A 16 EEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERR 83 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666667888888877643 3 35778899999999999998887653
No 4
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=44.50 E-value=31 Score=28.55 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=23.6
Q ss_pred hhhhHHHHhhccHHHHH-------HHHHHHHHHhhh
Q 009983 50 EAMELYSRARMQKEEIH-------SLRQQIAVACLK 78 (521)
Q Consensus 50 ~~~~l~~~~re~EEEI~-------~Lrk~Lad~s~K 78 (521)
.++||..++++..|||. +||.+|--|+.=
T Consensus 4 QNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtel 39 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDI 39 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999995 567778777653
No 5
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}
Probab=43.88 E-value=2.5e+02 Score=27.73 Aligned_cols=57 Identities=21% Similarity=0.492 Sum_probs=35.9
Q ss_pred CCCcce----eeeccccCCceeeeeEEEEEc-------------cCCceeeecCCCCCceeeeccccCceEEEEEEec
Q 009983 322 TPGEKL----LGCGYPVRGTTLCMFQWVRHL-------------QDGTRHYIEGATNPEYVVTADDVDKLIAVECIPM 382 (521)
Q Consensus 322 ~pG~~L----~acGysinGTtlC~FqWvRhl-------------eDGs~~~IegA~~p~Y~vTADDVd~~iAvec~Pm 382 (521)
-||+-| .|+||+++. .-+-|||+- .+|...|-+..++ .+++|.|.-.+.+-++..-|
T Consensus 13 kPG~Sl~lSC~~SG~tf~~---y~~~WvRQaPGkgLEWvg~I~~~~g~t~Y~~s~kg-R~TiSrD~s~nt~yLqm~sL 86 (254)
T 4f9p_D 13 RPGTSVKVSCKASGYAFTS---YLIHWIKQRPGQGLEWIGVINPRSGDSHYNEKFKD-RTTLTADQSSSTAYMQLSSL 86 (254)
T ss_dssp CTTCCEEEEEEEESSCGGG---CCEEEEEEETTTEEEEEEEEETTTTEEECCTTTTT-TEEEEEETTTTEEEEEECSC
T ss_pred CCCCCeEEEEEEeCCChhh---CcEEEEEeCCCCCeEEEEEEcCCCCCEEECHHhCC-CEEEeeccCCCcCeeEEccC
Confidence 367665 356888742 356788874 2344444444333 67889998888877775544
No 6
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=43.59 E-value=18 Score=32.42 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=35.8
Q ss_pred HHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHH
Q 009983 56 SRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSEL 96 (521)
Q Consensus 56 ~~~re~EEEI~~Lrk~Lad~s~KE~Qil~EK~vLErriA~m 96 (521)
.++++.+.||..|..+|-|+|.+=-+|+.|...|--||+.-
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~ 111 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADK 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence 46889999999999999999999999999999998888753
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=39.90 E-value=73 Score=36.73 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=19.5
Q ss_pred cchhhhhhhHHHHHHHHHHHHhhhhhcc
Q 009983 161 NASAISNTVKHLYDQLQSQIRTSYDRIR 188 (521)
Q Consensus 161 dAqSIvs~vKvL~~hLq~kl~~~e~klk 188 (521)
+-+..|++++..-+.|+.++..++..+.
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3347788888888888887777664443
No 8
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=39.36 E-value=22 Score=28.52 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=24.5
Q ss_pred ecCCCceeEecCCCcceEEEEecCCceeeeecC
Q 009983 461 RFPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTY 493 (521)
Q Consensus 461 kfs~~~~IkIp~g~~~qfvi~~sdG~e~~Lr~~ 493 (521)
+|+|+. |+|+-|++-.|+++..|+..|.+...
T Consensus 24 ~F~P~~-i~v~~G~tV~~~~~n~d~~~H~~~~~ 55 (100)
T 4hci_A 24 YFNPNV-ITIPINESTTLLLKNKGKSEHTFTIK 55 (100)
T ss_dssp EEESSE-EEECTTSCEEEEEEECSSSCEEEEEG
T ss_pred EEeCCE-EEECCCCEEEEEEEcCCCceEEEEEe
Confidence 567764 78888888888888888777877653
No 9
>3pl0_A Uncharacterized protein; quorum sensing, biofilm formation, double-stranded beta-HELI structural genomics; HET: MSE; 1.91A {Methylibium petroleiphilum}
Probab=37.82 E-value=67 Score=31.29 Aligned_cols=123 Identities=16% Similarity=0.126 Sum_probs=77.9
Q ss_pred EEecCCCCcccceeeeecccCCccccCccchHHHHHHHH-----hcc--eEEEEE-----eecCccc-------------
Q 009983 379 CIPMDDQGRQGELVRRFANDQNKIKCDLGMQSEIDAYIS-----RGH--ATFSVL-----MLMDSSE------------- 433 (521)
Q Consensus 379 c~PmDd~grkGElV~~~aNd~~kI~cDpeMq~~I~~~l~-----~G~--Asf~V~-----l~~~~~d------------- 433 (521)
+|+.|=+--.|.+++.|+-=..-+.-+|.||+.|..... .++ ..+.|. .......
T Consensus 91 ~Qs~~~N~~~Ggi~R~F~pl~~~~~~~p~~~~Ll~~~~~~~~~~~~~~~~~w~I~vHq~Ri~a~~~~g~ptPEGiHrDG~ 170 (254)
T 3pl0_A 91 WQPTTYNALHGGMERWFEPLSNEMIHLPSWSALLVALGELFAKLRAPQGGRWYIEAHPFRIDTEGGVGRPTPEGAHRDGV 170 (254)
T ss_dssp EECSSTTCSSCSEEECCCBCCHHHHTSHHHHHHHHHHHHHHHHHSCCGGGEEEEEEEEEEEETTSSCCCCCTTCSBCCSS
T ss_pred cCchhcccccCCeEEECCCcchhhhcCHHHHHHHHHHHHHhhhccCCcCCceEEEEEEEEEEEcCCCCccCCcccccCCC
Confidence 456666677799999998877788888999999987543 333 233322 2211110
Q ss_pred cccceeEEEeecceEEEeCCCcceeeeecCCCceeEecCCCcceEEEEecCCceeeeec---CC------CCCchhhHHH
Q 009983 434 NWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCGLSTQFVLTFSDGSSYPFST---YN------VRMRDTLVLT 504 (521)
Q Consensus 434 ~wE~atL~IrRegY~IK~~~~~~~I~Ekfs~~~~IkIp~g~~~qfvi~~sdG~e~~Lr~---~n------~~~RD~iVLT 504 (521)
.|- ++++|.|.+.. |+...|-+.- ....+..---++.+++|+......|..++ .+ +..||++|+|
T Consensus 171 d~v-~v~lv~R~Ni~----GGet~I~~~~-~~~~~~~~l~~p~d~llv~D~~~~H~vTpI~~~~~~~~~~~g~RDvlVvt 244 (254)
T 3pl0_A 171 DFV-AVVFIGRQGVR----GGETRVFDAA-GPQGVRFTLEQPWTVLLLDDQQVIHESTPLLPLDPADPAVPAHRDTLVLT 244 (254)
T ss_dssp SEE-EEEEEEEESEE----ECCEEEEETT-SSEEEEECCCSTTCEEEEETTTEEEEECCEEESCTTCTTSCCEEEEEEEE
T ss_pred CEE-EEEEecCCccc----cceEEEEcCC-CCccceeEecCCCcEEEEeCCcccCCCCccccCCCCCCCCceEEEEEEEE
Confidence 333 56777776543 3444443321 12334444678889999998888888775 33 3569999999
Q ss_pred HHH
Q 009983 505 MRM 507 (521)
Q Consensus 505 lR~ 507 (521)
+|.
T Consensus 245 f~~ 247 (254)
T 3pl0_A 245 YRS 247 (254)
T ss_dssp EES
T ss_pred ecC
Confidence 863
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.44 E-value=87 Score=32.06 Aligned_cols=18 Identities=6% Similarity=-0.025 Sum_probs=6.6
Q ss_pred hcchhhhHHHHhHHHHHH
Q 009983 83 QNEKYTLERKVSELRMAI 100 (521)
Q Consensus 83 l~EK~vLErriA~mR~A~ 100 (521)
..+...+++.+..+.-.+
T Consensus 522 ~~~~~~~~~~~~~~~~~~ 539 (597)
T 3oja_B 522 LRETQARRTEADAKQKET 539 (597)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcch
Confidence 333333333333333333
No 11
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=33.28 E-value=66 Score=30.18 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=13.7
Q ss_pred chhhhHHHHhHHHHHHhHHhhHHHHHHHHHH
Q 009983 85 EKYTLERKVSELRMAIDEKQNEAITSALNEL 115 (521)
Q Consensus 85 EK~vLErriA~mR~A~DqqQqdlVdaAsKaL 115 (521)
||..++..|.+++-+.+.+..+.+.++.++|
T Consensus 173 ~k~~i~~~l~~~~~~L~~~~~~~i~~~~~~L 203 (219)
T 4e81_A 173 DKTAIESALTALETALKGEDKAAIEAKMQEL 203 (219)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4444444444444444444334444444443
No 12
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=33.02 E-value=1.3e+02 Score=25.58 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhhhhh--------hhhcchhhhHHHHhHHHHHH-----hHHhh-HHHHHHHHH-----------HHHh
Q 009983 64 EIHSLRQQIAVACLKEL--------QLQNEKYTLERKVSELRMAI-----DEKQN-EAITSALNE-----------LARR 118 (521)
Q Consensus 64 EI~~Lrk~Lad~s~KE~--------Qil~EK~vLErriA~mR~A~-----DqqQq-dlVdaAsKa-----------LsyR 118 (521)
++..||++|.+.--+=+ .|++|.-.|=+.||....+- |.... .+++...+. -..=
T Consensus 4 ~L~~lR~~ID~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~~~g~pi~dp~RE~~vl~~~~~~~~~~~l~~~~i~~if 83 (104)
T 2gtv_X 4 KLAEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLGIPINDPEREKYIYDRIRKLCKEHNVDENIGIKIF 83 (104)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHTSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHCCCCCcChHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 47789999988888878 88999999999999888653 43332 333332221 1234
Q ss_pred hhhHhhhhhhhhhhhhhhhh
Q 009983 119 KGVLEENLKLAHDLKVAEDE 138 (521)
Q Consensus 119 q~iiEENiRLtyaLQ~aeqE 138 (521)
+.||+.++++-+.+-...||
T Consensus 84 ~~ii~~s~~~Q~~~l~~~~~ 103 (104)
T 2gtv_X 84 QRLIEHNKALQKQYLEETLE 103 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 57778888777776665554
No 13
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=32.86 E-value=77 Score=27.40 Aligned_cols=48 Identities=13% Similarity=0.100 Sum_probs=37.3
Q ss_pred hhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhh
Q 009983 58 ARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQN 105 (521)
Q Consensus 58 ~re~EEEI~~Lrk~Lad~s~KE~Qil~EK~vLErriA~mR~A~DqqQq 105 (521)
++..++||..||+.|-...+.=--+.+-|..||+.|+++.--|+.+-.
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~ 78 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALK 78 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999887776566788899999999999887765543
No 14
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=32.39 E-value=96 Score=35.67 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 009983 62 KEEIHSLRQQIAVA 75 (521)
Q Consensus 62 EEEI~~Lrk~Lad~ 75 (521)
++|+..|+..|...
T Consensus 863 ~~eL~el~~~L~~l 876 (1184)
T 1i84_S 863 DEELQRTKERQQKA 876 (1184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 15
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=31.49 E-value=43 Score=27.57 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=35.0
Q ss_pred CCcceEEEEecCCceeeeecCCCCCchhhHHHHHHHHhhhh
Q 009983 473 GLSTQFVLTFSDGSSYPFSTYNVRMRDTLVLTMRMLQGKAL 513 (521)
Q Consensus 473 g~~~qfvi~~sdG~e~~Lr~~n~~~RD~iVLTlR~F~~~Al 513 (521)
+...-|.|+..+|..+.|.+.+...||.=|-.|+.-+..+|
T Consensus 87 ~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i~~~l 127 (128)
T 2rlo_A 87 EENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILASL 127 (128)
T ss_dssp CCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHc
Confidence 35567999999889999999999999999998888777665
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=31.38 E-value=1.4e+02 Score=34.48 Aligned_cols=18 Identities=33% Similarity=0.446 Sum_probs=8.8
Q ss_pred HhhccHHHHHHHHHHHHH
Q 009983 57 RARMQKEEIHSLRQQIAV 74 (521)
Q Consensus 57 ~~re~EEEI~~Lrk~Lad 74 (521)
++++.|+||..|++.+..
T Consensus 985 ~v~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555443
No 17
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=31.33 E-value=26 Score=25.67 Aligned_cols=21 Identities=24% Similarity=0.456 Sum_probs=18.3
Q ss_pred HhhccHHHHHHHHHHHHHHhh
Q 009983 57 RARMQKEEIHSLRQQIAVACL 77 (521)
Q Consensus 57 ~~re~EEEI~~Lrk~Lad~s~ 77 (521)
-+|.||+-....|++|+++-.
T Consensus 11 DIr~QE~rV~~aR~rL~eaL~ 31 (36)
T 2l2l_B 11 DIRKQEERVQQVRKKLEEALM 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999854
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=31.08 E-value=11 Score=38.74 Aligned_cols=27 Identities=7% Similarity=0.179 Sum_probs=14.2
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhccccc
Q 009983 165 ISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (521)
Q Consensus 165 Ivs~vKvL~~hLq~kl~~~e~klke~~ 191 (521)
.....|...+.|+.++..+..++|+..
T Consensus 552 ~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 552 QLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555554
No 19
>3dde_A TENA/THI-4 protein, domain of unknown function WI oxygenase-like fold; structural genomics, joint center for structural genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans OS217}
Probab=29.00 E-value=48 Score=30.51 Aligned_cols=52 Identities=17% Similarity=0.297 Sum_probs=38.8
Q ss_pred HhHHHHHHh------HHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHHH
Q 009983 93 VSELRMAID------EKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMS 144 (521)
Q Consensus 93 iA~mR~A~D------qqQqdlVdaAsKaLsyRq~iiEENiRLtyaLQ~aeqERs~fvs 144 (521)
+..+|-..| ++|+.+|++|-.+...-.+++++=-+--..++..+-+|++|+-
T Consensus 179 ~~~~~~~ld~~~~~~~~~~~ii~~a~~~~~l~~~~f~~l~~~~~~~~~~~~~~~~~~~ 236 (239)
T 3dde_A 179 AEEVNEMLHEVCKTQEDVDSVVAVMENSLVLTARILDDVWKEYQLFQSGASDRYAFLR 236 (239)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCCCC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHh
Confidence 334555554 5689999999999999999988866554444999999999873
No 20
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.54 E-value=57 Score=28.37 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=33.0
Q ss_pred hhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhH
Q 009983 58 ARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNE 106 (521)
Q Consensus 58 ~re~EEEI~~Lrk~Lad~s~KE~Qil~EK~vLErriA~mR~A~DqqQqd 106 (521)
++...+||..||+.|-...+.=-.+.+-|..||..|+++.--|+.+-.+
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~ 81 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQ 81 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788999999988877765567788999999999998877765443
No 21
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=28.29 E-value=49 Score=24.08 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhH
Q 009983 62 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSE 95 (521)
Q Consensus 62 EEEI~~Lrk~Lad~s~KE~Qil~EK~vLErriA~ 95 (521)
.|++..|=.|||.|.-|=-.|=.+...||.+|..
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788999999999999988888888888888753
No 22
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=28.17 E-value=78 Score=25.88 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=24.8
Q ss_pred hhHHHHhH--HHHHHhHHhhHHHHHHHHHHHHhhhhHhh
Q 009983 88 TLERKVSE--LRMAIDEKQNEAITSALNELARRKGVLEE 124 (521)
Q Consensus 88 vLErriA~--mR~A~DqqQqdlVdaAsKaLsyRq~iiEE 124 (521)
.||.||.+ +|+|| |.+.|+.-+.++..-|.-|..
T Consensus 11 ~le~Ri~~LE~klAf---qE~tIeeLn~~v~~Qq~~Id~ 46 (78)
T 3efg_A 11 ELEARLVELETRLSF---QEQALTELSEALADARLTGAR 46 (78)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 35667664 46777 788888888888877777764
No 23
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=27.73 E-value=1.2e+02 Score=26.49 Aligned_cols=62 Identities=21% Similarity=0.133 Sum_probs=38.0
Q ss_pred HHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhh
Q 009983 55 YSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLK 133 (521)
Q Consensus 55 ~~~~re~EEEI~~Lrk~Lad~s~KE~Qil~EK~vLErriA~mR~A~DqqQqdlVdaAsKaLsyRq~iiEENiRLtyaLQ 133 (521)
=.+..+.||...+|++.+-+-|= -+..++.++|-.|.++.. .--+|.+|-.+|+| ||+.||.
T Consensus 36 KD~LEe~eE~~aql~Re~~eK~r--------------e~e~~Kr~~~~L~~~~~~-lk~~L~qRD~LI~E--~~~~~~~ 97 (103)
T 4h22_A 36 KDMLLELEEQLAESRRQYEEKNK--------------EFEREKHAHSILQFQFAE-VKEALKQREEMLEP--KLAAALE 97 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH-HHHHHHTTTSCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHH
Confidence 34667888888888888776542 255666777776666543 45589999999998 5666653
No 24
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=27.27 E-value=44 Score=30.76 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=38.2
Q ss_pred hhhhhhhhHHHHHHHHHHhhhc-CCCCCcccchhhhhhhHHHHHHHHHHHHhhhhhccccc
Q 009983 132 LKVAEDERYFFMSSMLGLLADY-GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (521)
Q Consensus 132 LQ~aeqERs~fvssLLpLLaEY-~LqP~v~dAqSIvs~vKvL~~hLq~kl~~~e~klke~~ 191 (521)
++.|+++.+.-++.|+-+...| +|... .-|.+||.+|..+|.+|.-..
T Consensus 75 ~~~ae~~Ls~aL~~L~av~E~YP~LKan------------~~f~~Lq~eL~~~EnrIa~AR 123 (171)
T 2etd_A 75 SAQADAELSSALSRLLAIAENYPNLXAD------------ANFRQLMDELAGTENRIAVAR 123 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHC------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccccC------------hHHHHHHHHHHHHHHHHHHHH
Confidence 5688999998889888877777 55443 359999999999999987655
No 25
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=27.12 E-value=4.7e+02 Score=28.45 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=70.9
Q ss_pred CCCccccchhhhhHHHHhhccHHHHH--HHHHHHHHHhhh-hhhhhcchhhhHHHHhHHHHHHhH---HhhHHHHHHHHH
Q 009983 41 DNFISFQDREAMELYSRARMQKEEIH--SLRQQIAVACLK-ELQLQNEKYTLERKVSELRMAIDE---KQNEAITSALNE 114 (521)
Q Consensus 41 ~~~~~~~d~~~~~l~~~~re~EEEI~--~Lrk~Lad~s~K-E~Qil~EK~vLErriA~mR~A~Dq---qQqdlVdaAsKa 114 (521)
+...-=-+|-++.++.|++|-|+|.. ..|-+..+.-.+ ...-|.+-| +++.-.--.|+ .|-+.++.|.|+
T Consensus 82 ~~~pDPLsPgE~~~~~Kl~eLE~e~k~d~~~~khn~~I~~k~g~~l~~v~----~~~~~~~~~e~~e~~q~~~LekAl~s 157 (526)
T 3iyk_A 82 EEIPDPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVY----NFMNGEANAEIEDEKQFDILNKAVTS 157 (526)
T ss_pred CCCCCCCCHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 33333457889999999999888875 444444333332 222222222 12221122222 477888888886
Q ss_pred HHHhhhhHhhhh---hhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhhhhHHHHHHHHHHHH
Q 009983 115 LARRKGVLEENL---KLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIR 181 (521)
Q Consensus 115 LsyRq~iiEENi---RLtyaLQ~aeqERs~fvssLLpLLaEY~LqP~v~dAqSIvs~vKvL~~hLq~kl~ 181 (521)
+. +=+-+||- +|+-|||....+||. |=..+|+..+.-|+.|++-+.
T Consensus 158 ~~--~i~~~e~~~l~~L~~AL~kE~~~Rt~-------------------dE~~mi~~yr~k~~aL~~aIe 206 (526)
T 3iyk_A 158 YN--KILTEEDLQMRRLATALQKEIGERTH-------------------AETVMVKEYRDKIDALKNAIE 206 (526)
T ss_pred HH--HHHHHHHhHHHHHHHHHHHHHHhhcH-------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 54 44445554 578899999999984 566677777777777776654
No 26
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=26.11 E-value=1.7e+02 Score=26.49 Aligned_cols=110 Identities=15% Similarity=0.176 Sum_probs=55.2
Q ss_pred CCChhhhhhcccccccccccccCCCCccccchhhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHH
Q 009983 18 AKNSDFVNRHKIETHLAPTKQKEDNFISFQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELR 97 (521)
Q Consensus 18 ~~~s~~~~r~~~~~~l~~~~~~~~~~~~~~d~~~~~l~~~~re~EEEI~~Lrk~Lad~s~KE~Qil~EK~vLErriA~mR 97 (521)
+++||+.+|.+|.. |-+..+...-...+.|++.-+- -.++|.+--..|++|.=.=.+=+.+. +++..|=
T Consensus 37 sassDa~vrq~Ia~-LP~eVsd~s~l~klkDk~~~e~------l~~~veeA~~~L~eYn~rL~~E~~dR----~~L~~~L 105 (152)
T 4fla_A 37 AASGDATVRQKIAS-LPQEVQDVSLLEKITDKEAAER------LSKTVDEACLLLAEYNGRLAAELEDR----RQLARML 105 (152)
T ss_dssp HHHHHHHHHHHHHT-SCGGGTCGGGGGGCCSHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred cccchHHHHHHHHc-CCccccCHHHHHHcccHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 57888999988665 3333333333344444442221 12344455555666653311112222 2344555
Q ss_pred HHHhHHhhHHHHHHHHHH-HHhhhhHhhhhhhhhhhhhhhhhhHHHHHHH
Q 009983 98 MAIDEKQNEAITSALNEL-ARRKGVLEENLKLAHDLKVAEDERYFFMSSM 146 (521)
Q Consensus 98 ~A~DqqQqdlVdaAsKaL-syRq~iiEENiRLtyaLQ~aeqERs~fvssL 146 (521)
..|.+.|++.+..|=|-| .||+- .--++....|.---|+||
T Consensus 106 ~~~~~~~~~~l~e~e~~leeyK~K--------l~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 106 VEYTQNQKDVLSEKEKKLEEYKQK--------LARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhhcC
Confidence 677777777776666655 44443 223444445555555554
No 27
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=25.58 E-value=75 Score=28.75 Aligned_cols=33 Identities=30% Similarity=0.327 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHh
Q 009983 60 MQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVS 94 (521)
Q Consensus 60 e~EEEI~~Lrk~Lad~s~KE~Qil~EK~vLErriA 94 (521)
|-++||..|+.+-..| .+.-+.||--|+||||+
T Consensus 36 EL~~EI~~L~EKaRKA--Eq~Gi~NE~aV~erKi~ 68 (128)
T 1sf9_A 36 ELNTEIALLSEKARKA--EQHGIINELAVLERKIT 68 (128)
T ss_dssp HHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHcCCccHHHHHHHHHH
Confidence 3456777777665544 46679999999999985
No 28
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=24.35 E-value=1.1e+02 Score=29.46 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=41.2
Q ss_pred cccccceeEEEeecceEEEeCCCcceeeeecCCCceeEecCC------CcceEEEEecCC
Q 009983 432 SENWEQATLILRRSIYRIKIDSTEAIIEERFPKEVSIKVPCG------LSTQFVLTFSDG 485 (521)
Q Consensus 432 ~d~wE~atL~IrRegY~IK~~~~~~~I~Ekfs~~~~IkIp~g------~~~qfvi~~sdG 485 (521)
.+.|+ ..|-|-=-||.+...+..+.|.==||-.+.+.||.| .+++++|.+.|-
T Consensus 107 t~Gf~-kkLelvGvGYra~~~G~~L~L~LG~SHpv~~~iP~GI~v~v~~~t~Iiv~GiDK 165 (212)
T 1nkw_E 107 SDGYT-INLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDK 165 (212)
T ss_pred ccCeE-EEEEEeeeeeEEEcCCCEEEEEccCCccEEEECCCCeEEEeCCCCEEEEEeCCH
Confidence 56677 788888899999988777888778898899999977 335666666654
No 29
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=24.19 E-value=4.3e+02 Score=24.44 Aligned_cols=130 Identities=13% Similarity=0.130 Sum_probs=75.4
Q ss_pred cch-hhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcch----hhhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhh
Q 009983 47 QDR-EAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEK----YTLERKVSELRMAIDEKQNEAITSALNELARRKGV 121 (521)
Q Consensus 47 ~d~-~~~~l~~~~re~EEEI~~Lrk~Lad~s~KE~Qil~EK----~vLErriA~mR~A~DqqQqdlVdaAsKaLsyRq~i 121 (521)
.|. +++.++.|-+.-+.||...+..+....-.=.+|+.++ -.+.+|+..|+-.|+ .|.+. ..-|+..
T Consensus 34 ~d~~~~~~ll~kh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~l~~~w~----~L~~~----~~~R~~~ 105 (326)
T 3kbt_A 34 KDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYA----GLKDV----AEERKRK 105 (326)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHH----HHHHH----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH----HHHHH----HHHHHHH
Confidence 343 4567777777788888777766655443333344433 356777777766554 33333 3458899
Q ss_pred HhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhhhhHHHHHHHHHHHHhh-hhhccc
Q 009983 122 LEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTS-YDRIRD 189 (521)
Q Consensus 122 iEENiRLtyaLQ~aeqERs~fvssLLpLLaEY~LqP~v~dAqSIvs~vKvL~~hLq~kl~~~-e~klke 189 (521)
||+.++| |.+...=++--..+..-...|+.-+ +.+--.-|..+..-|+.++..+..+ +.++..
T Consensus 106 Le~~l~l-~~f~~~~~~l~~Wl~~~e~~l~~~~----~g~d~~~v~~l~~~~~~f~~el~~~~~~~v~~ 169 (326)
T 3kbt_A 106 LENMYHL-FQLKRETDDLEQWISEKELVASSPE----MGQDFDHVTLLRDKFRDFARETGAIGQERVDN 169 (326)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCC----CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHcccc----CCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999887 5544444555566666666666322 2222233344445567777776652 444443
No 30
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=23.68 E-value=3.5e+02 Score=23.22 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHHHHHhHHhh
Q 009983 62 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQN 105 (521)
Q Consensus 62 EEEI~~Lrk~Lad~s~KE~Qil~EK~vLErriA~mR~A~DqqQq 105 (521)
|.+|..||++|.+.+.- |-.|+-.+..||.+.|.-..
T Consensus 19 e~~I~~LR~qid~~~~e-------~a~l~leldn~~~~~edfk~ 55 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTND-------KARVEVERDNLAEDIMRLRE 55 (119)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 67899999999888765 44445555555555554443
No 31
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=22.39 E-value=5.2e+02 Score=24.71 Aligned_cols=57 Identities=16% Similarity=0.269 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhhcC--C--CCCcccchhhhhhhHHHHHHHHHHHHhhhhhccccccCCCCCCC
Q 009983 140 YFFMSSMLGLLADYG--L--WPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAG 199 (521)
Q Consensus 140 s~fvssLLpLLaEY~--L--qP~v~dAqSIvs~vKvL~~hLq~kl~~~e~klke~~~~pg~~~~ 199 (521)
.-|+..|||.|--+. | -|.-.+..++..+|+-++++|..=|. ..-|+.+. +.|..+.
T Consensus 109 e~~~~~LLpVlDnlerAl~~~~~~~~~~~l~eGvemi~k~l~~~L~--k~Gv~~I~-~~Ge~FD 169 (213)
T 4ani_A 109 QSLASDLLPVLDNFERALKIETDNEQAKSILQGMEMVYRSLVDALK--KEGVEAIE-AVGKPFD 169 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSCCSTHHHHHHHHHHHHHHHHHHHH--HTTEECCC-CSSSCCC
T ss_pred HHHHHHHhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHH--HCCCEEeC-CCCCCCC
Confidence 469999999987762 2 24445667899999999999998884 44566665 3365555
No 32
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=21.46 E-value=1.9e+02 Score=25.74 Aligned_cols=42 Identities=17% Similarity=0.239 Sum_probs=23.7
Q ss_pred HHhhccHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHhHHH
Q 009983 56 SRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELR 97 (521)
Q Consensus 56 ~~~re~EEEI~~Lrk~Lad~s~KE~Qil~EK~vLErriA~mR 97 (521)
..+.+-++||..|+..|..+.+|--.+..|...|.+++..|+
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666666555555555555554443
No 33
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=21.21 E-value=2e+02 Score=23.08 Aligned_cols=31 Identities=23% Similarity=0.112 Sum_probs=24.5
Q ss_pred cCCCceeEecCCCcceEEEEecCCceeeeecC
Q 009983 462 FPKEVSIKVPCGLSTQFVLTFSDGSSYPFSTY 493 (521)
Q Consensus 462 fs~~~~IkIp~g~~~qfvi~~sdG~e~~Lr~~ 493 (521)
|+|. .|+||.|.+..|.++..|+..|.+...
T Consensus 35 f~p~-~i~v~~G~~V~~~~~n~d~~~H~~~i~ 65 (112)
T 1iby_A 35 NEPE-TLVVKKGDAVKVVVENKSPISEGFSID 65 (112)
T ss_dssp EESC-EEEEETTCEEEEEEEECSSSCEEEEEG
T ss_pred EcCC-EEEEeCCCEEEEEEEECCCCeEEEEEc
Confidence 5554 588999999999999988777877654
No 34
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=21.21 E-value=4.6e+02 Score=27.83 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=16.3
Q ss_pred HHHhhc-cHHHHHHHHHHHHHHhhhh
Q 009983 55 YSRARM-QKEEIHSLRQQIAVACLKE 79 (521)
Q Consensus 55 ~~~~re-~EEEI~~Lrk~Lad~s~KE 79 (521)
..+.++ -+..|.+|+..|...+-+.
T Consensus 91 L~k~q~~V~~~LqeLe~~l~~lsn~T 116 (464)
T 1m1j_B 91 LLKQEKTVKPVLRDLKDRVAKFSDTS 116 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHhHHHHHHHHHHHHhhhh
Confidence 344433 4567889999988876543
No 35
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=20.75 E-value=5e+02 Score=23.90 Aligned_cols=127 Identities=10% Similarity=0.142 Sum_probs=69.4
Q ss_pred hhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhcchh----hhHHHHhHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhh
Q 009983 50 EAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKY----TLERKVSELRMAIDEKQNEAITSALNELARRKGVLEEN 125 (521)
Q Consensus 50 ~~~~l~~~~re~EEEI~~Lrk~Lad~s~KE~Qil~EK~----vLErriA~mR~A~DqqQqdlVdaAsKaLsyRq~iiEEN 125 (521)
+.+.|..+-+.-|.+|.....++....-.=.+|..+.+ .++.|+..|.-.|+. |.+. +..|+..||+.
T Consensus 37 ~v~~ll~kh~~le~~i~~~~~~v~~l~~~a~~l~~~~~~~~~~i~~~~~~l~~~w~~----L~~~----~~~R~~~Le~~ 108 (322)
T 1u4q_A 37 SVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQR----IKSM----AAARRAKLNES 108 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCSSCTHHHHHHHHHHHHHHHH----HHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH----HHHH----HHHHHHHHHHH
Confidence 34556666666677777777666555444444554433 344555555444433 3332 45789999998
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhhhhHHHHHHHHHHHHhhhhhccc
Q 009983 126 LKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRD 189 (521)
Q Consensus 126 iRLtyaLQ~aeqERs~fvssLLpLLaEY~LqP~v~dAqSIvs~vKvL~~hLq~kl~~~e~klke 189 (521)
.+|. .....-+|-...+....++|+.-++- .|..++ .++..-++.|+.+|...+..+..
T Consensus 109 ~~l~-~f~~~~~~~~~Wl~e~e~~~~~~~~g---~dl~~v-~~ll~~h~~l~~el~~~~~~i~~ 167 (322)
T 1u4q_A 109 HRLH-QFFRDMDDEESWIKEKKLLVSSEDYG---RDLTGV-QNLRKKHKRLEAELAAHEPAIQG 167 (322)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHTCCCCC---SSHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHhccCCCcC---CCHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8853 33333345566677778888764432 233222 22223355566666554444433
No 36
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=20.72 E-value=1e+02 Score=27.74 Aligned_cols=35 Identities=40% Similarity=0.461 Sum_probs=25.2
Q ss_pred HHHHHHH-------HHHHHHhhh-----hhhhhcchhhhHHHHhHHH
Q 009983 63 EEIHSLR-------QQIAVACLK-----ELQLQNEKYTLERKVSELR 97 (521)
Q Consensus 63 EEI~~Lr-------k~Lad~s~K-----E~Qil~EK~vLErriA~mR 97 (521)
.||.+|- .+||.+... =+|+..|+..|+++|+.||
T Consensus 10 ~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 10 NEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLR 56 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666554 455554433 2688999999999999998
Done!