Query 009984
Match_columns 521
No_of_seqs 167 out of 186
Neff 3.2
Searched_HMMs 46136
Date Thu Mar 28 19:40:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009984.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009984hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00612 IQ: IQ calmodulin-bin 94.9 0.018 4E-07 37.2 1.8 20 111-130 1-20 (21)
2 smart00015 IQ Short calmodulin 93.8 0.046 9.9E-07 36.8 2.0 21 110-130 2-22 (26)
3 PF13360 PQQ_2: PQQ-like domai 69.8 16 0.00034 33.6 6.7 75 272-346 12-98 (238)
4 PRK11138 outer membrane biogen 68.7 18 0.00039 37.1 7.5 90 256-345 259-356 (394)
5 PRK11138 outer membrane biogen 66.9 18 0.0004 37.1 7.1 113 227-340 266-392 (394)
6 TIGR03300 assembly_YfgL outer 65.9 19 0.00041 36.3 6.9 83 257-339 283-376 (377)
7 TIGR03300 assembly_YfgL outer 63.7 30 0.00065 34.9 7.9 91 256-346 244-342 (377)
8 cd02885 IPP_Isomerase Isopente 58.6 37 0.0008 31.1 6.9 77 276-372 6-95 (165)
9 PF02375 JmjN: jmjN domain; I 54.7 6.2 0.00013 29.1 0.9 17 346-362 3-19 (34)
10 PF13360 PQQ_2: PQQ-like domai 49.7 40 0.00086 31.0 5.6 90 256-345 39-143 (238)
11 PF13344 Hydrolase_6: Haloacid 47.9 10 0.00022 32.7 1.3 60 294-369 1-60 (101)
12 PF08763 Ca_chan_IQ: Voltage g 44.5 16 0.00034 27.6 1.7 20 111-130 9-28 (35)
13 TIGR02150 IPP_isom_1 isopenten 43.8 1E+02 0.0023 28.2 7.3 60 290-371 29-89 (158)
14 cd00148 PROF Profilin binds ac 42.7 22 0.00048 32.0 2.8 61 316-379 9-76 (127)
15 PF13570 PQQ_3: PQQ-like domai 41.5 44 0.00094 23.9 3.6 33 273-305 1-36 (40)
16 PF01453 B_lectin: D-mannose b 41.1 1.5E+02 0.0033 26.1 7.7 65 264-329 19-91 (114)
17 cd04970 Ig6_Contactin_like Six 40.1 82 0.0018 25.2 5.4 59 274-332 18-82 (85)
18 smart00545 JmjN Small domain f 34.1 26 0.00056 27.0 1.5 30 346-375 5-37 (42)
19 cd04904 ACT_AAAH ACT domain of 33.4 38 0.00083 27.5 2.5 30 347-378 10-39 (74)
20 smart00701 PGRP Animal peptido 33.2 1.1E+02 0.0023 28.3 5.7 57 291-361 64-122 (142)
21 PF00235 Profilin: Profilin; 31.8 15 0.00033 31.9 -0.1 59 316-378 9-74 (121)
22 COG4632 EpsL Exopolysaccharide 31.5 62 0.0014 34.3 4.2 63 267-335 156-220 (320)
23 PRK03759 isopentenyl-diphospha 30.3 1.8E+02 0.0039 27.3 6.8 60 291-370 37-97 (184)
24 cd00216 PQQ_DH Dehydrogenases 30.2 1.6E+02 0.0035 31.8 7.3 86 257-347 65-188 (488)
25 PF10411 DsbC_N: Disulfide bon 29.7 93 0.002 24.6 4.1 27 265-303 25-51 (57)
26 PF13509 S1_2: S1 domain; PDB: 29.3 45 0.00099 26.5 2.3 34 226-270 13-48 (61)
27 cd05853 Ig6_Contactin-4 Sixth 29.1 1.4E+02 0.0031 25.3 5.3 58 274-332 18-82 (85)
28 KOG4427 E3 ubiquitin protein l 28.3 30 0.00065 40.9 1.4 24 109-132 28-51 (1096)
29 KOG0377 Protein serine/threoni 27.5 34 0.00074 38.4 1.7 22 111-132 17-38 (631)
30 COG4337 Uncharacterized protei 26.9 1.1E+02 0.0023 30.5 4.7 24 289-318 179-202 (206)
31 cd05854 Ig6_Contactin-2 Sixth 26.0 1.7E+02 0.0037 24.0 5.2 59 274-332 18-82 (85)
32 KOG0942 E3 ubiquitin protein l 25.1 33 0.00073 41.0 1.1 22 109-130 27-48 (1001)
33 TIGR03075 PQQ_enz_alc_DH PQQ-d 23.5 3.3E+02 0.0072 30.2 8.3 97 250-346 66-193 (527)
34 cd05727 Ig2_Contactin-2-like S 23.2 2.1E+02 0.0045 25.1 5.4 38 274-312 35-75 (96)
35 PF15537 Toxin_59: Putative to 23.2 70 0.0015 30.1 2.6 57 290-347 50-115 (125)
36 PRK14464 ribosomal RNA large s 22.9 66 0.0014 34.2 2.7 28 341-368 283-310 (344)
37 PF13128 DUF3954: Protein of u 22.8 82 0.0018 25.5 2.6 20 326-345 10-30 (50)
38 TIGR03074 PQQ_membr_DH membran 20.1 3.7E+02 0.008 31.7 8.1 96 250-345 191-347 (764)
No 1
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=94.86 E-value=0.018 Score=37.16 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhhhhhhhhcc
Q 009984 111 DAAATKLQKVYKSYRTRRNL 130 (521)
Q Consensus 111 ~~AA~~iQk~Yr~yRtRR~L 130 (521)
..||++||+.||+|..|+++
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhc
Confidence 36999999999999999875
No 2
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=93.76 E-value=0.046 Score=36.83 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhhhhhhhhcc
Q 009984 110 LDAAATKLQKVYKSYRTRRNL 130 (521)
Q Consensus 110 ~~~AA~~iQk~Yr~yRtRR~L 130 (521)
...||++||+.||+|..|++.
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 468999999999999999986
No 3
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=69.77 E-value=16 Score=33.57 Aligned_cols=75 Identities=27% Similarity=0.333 Sum_probs=51.9
Q ss_pred cCeEEEeeC-----CcEEe-ccCCCeEEEEEcCCCcEEEeeccCCceecccCCCC----CcceeeeeEEEe--cceeEEe
Q 009984 272 SGKLVYRQT-----GMFVN-TNEDSKWIFVLSTSRALYVGQKKKGVFQHSSFLSG----GAITAAGRLVAH--DGILEAI 339 (521)
Q Consensus 272 dGrL~y~~s-----G~~vd-Tt~~~kWIFVmdtsg~LYVG~KkkG~FQHSSFLaG----g~V~AAG~I~Vk--nG~Lk~I 339 (521)
+|+.+|..+ +..+. +...+..+||.+.++.||+=....|....+.=+.+ .++...|.|.+- +|.|..|
T Consensus 12 tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~ 91 (238)
T PF13360_consen 12 TGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYAL 91 (238)
T ss_dssp TTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEE
T ss_pred CCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEec
Confidence 799998873 33342 33356779999999999998877777654433332 245666777654 6889999
Q ss_pred cCCCCCC
Q 009984 340 WPYSGHY 346 (521)
Q Consensus 340 sp~SGHY 346 (521)
...+|+-
T Consensus 92 d~~tG~~ 98 (238)
T PF13360_consen 92 DAKTGKV 98 (238)
T ss_dssp ETTTSCE
T ss_pred ccCCcce
Confidence 9888876
No 4
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=68.71 E-value=18 Score=37.11 Aligned_cols=90 Identities=20% Similarity=0.238 Sum_probs=55.2
Q ss_pred hccCcccccceEEEEecCeEEEeeCC-cEEeccCCCeEEEEEcCCCcEEEeeccCCceec-ccCC----CCCcceeeeeE
Q 009984 256 KYLGPKEREEFEVVVESGKLVYRQTG-MFVNTNEDSKWIFVLSTSRALYVGQKKKGVFQH-SSFL----SGGAITAAGRL 329 (521)
Q Consensus 256 kYLspeERe~YeV~IedGrL~y~~sG-~~vdTt~~~kWIFVmdtsg~LYVG~KkkG~FQH-SSFL----aGg~V~AAG~I 329 (521)
-|+.-..-.-|-+-..+|+++|++.- ...+-.-.+..|||.+.+|.||+=..+.|...= ...+ ...++++-|.|
T Consensus 259 vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l 338 (394)
T PRK11138 259 VYALAYNGNLVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYL 338 (394)
T ss_pred EEEEEcCCeEEEEECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEE
Confidence 44443333334444457888887631 111111135679999999999998777776431 1112 24567777888
Q ss_pred EEe--cceeEEecCCCCC
Q 009984 330 VAH--DGILEAIWPYSGH 345 (521)
Q Consensus 330 ~Vk--nG~Lk~Isp~SGH 345 (521)
.+- ||.|..|.+..|.
T Consensus 339 ~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 339 VVGDSEGYLHWINREDGR 356 (394)
T ss_pred EEEeCCCEEEEEECCCCC
Confidence 774 6899999888875
No 5
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=66.89 E-value=18 Score=37.09 Aligned_cols=113 Identities=17% Similarity=0.175 Sum_probs=64.4
Q ss_pred CceEEeecCCCCcc---CCCCCChhhhhhhhhhccCcccccceEEEEecCeEEEeeCC--cEEeccC--CCeEEEEEcCC
Q 009984 227 PFFYWLDVGDGKEV---NLEKCPRNVLQRQCIKYLGPKEREEFEVVVESGKLVYRQTG--MFVNTNE--DSKWIFVLSTS 299 (521)
Q Consensus 227 ~FFyWLD~GeGk~v---~le~CpR~kL~~q~IkYLspeERe~YeV~IedGrL~y~~sG--~~vdTt~--~~kWIFVmdts 299 (521)
.-+|-||.-.|+.+ ++.... .-......-|+.-..-.-|-+-.++|+++|..+. ....++. .+..+||.+.+
T Consensus 266 g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~ 344 (394)
T PRK11138 266 GNLVALDLRSGQIVWKREYGSVN-DFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSE 344 (394)
T ss_pred CeEEEEECCCCCEEEeecCCCcc-CcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCC
Confidence 45678888788753 121111 1111222345554444455555557888887642 1111111 24468999999
Q ss_pred CcEEEeeccCCceecccCC-----CCCcceeeeeEEEe--cceeEEec
Q 009984 300 RALYVGQKKKGVFQHSSFL-----SGGAITAAGRLVAH--DGILEAIW 340 (521)
Q Consensus 300 g~LYVG~KkkG~FQHSSFL-----aGg~V~AAG~I~Vk--nG~Lk~Is 340 (521)
|.||+=..+.|.+.-+.-+ ...++++-|+|.|- ||.|..|.
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEe
Confidence 9999876666776543323 23466777888774 68887775
No 6
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=65.94 E-value=19 Score=36.32 Aligned_cols=83 Identities=16% Similarity=0.139 Sum_probs=46.7
Q ss_pred ccCcccccceEEEEecCeEEEeeCC--cEEecc--CCCeEEEEEcCCCcEEEeeccCCceeccc-----CCCCCcceeee
Q 009984 257 YLGPKEREEFEVVVESGKLVYRQTG--MFVNTN--EDSKWIFVLSTSRALYVGQKKKGVFQHSS-----FLSGGAITAAG 327 (521)
Q Consensus 257 YLspeERe~YeV~IedGrL~y~~sG--~~vdTt--~~~kWIFVmdtsg~LYVG~KkkG~FQHSS-----FLaGg~V~AAG 327 (521)
|.......-|-+-..+|+++|+... ....++ -.+..+||.+.+|.||+-..+.|.+.-+- -....++++-|
T Consensus 283 yv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~ 362 (377)
T TIGR03300 283 YVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD 362 (377)
T ss_pred EEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECC
Confidence 3333333333333446777766521 101111 02457999999999999877778776332 23345566666
Q ss_pred eEEE--ecceeEEe
Q 009984 328 RLVA--HDGILEAI 339 (521)
Q Consensus 328 ~I~V--knG~Lk~I 339 (521)
.|.| .||.|..+
T Consensus 363 ~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 363 GLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEEeCCceEEEe
Confidence 6666 36877654
No 7
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=63.66 E-value=30 Score=34.90 Aligned_cols=91 Identities=13% Similarity=0.215 Sum_probs=51.8
Q ss_pred hccCcccccceEEEEecCeEEEeeCCcEEec-cCCCeEEEEEcCCCcEEEeeccCCceecc--cCC---CCCcceeeeeE
Q 009984 256 KYLGPKEREEFEVVVESGKLVYRQTGMFVNT-NEDSKWIFVLSTSRALYVGQKKKGVFQHS--SFL---SGGAITAAGRL 329 (521)
Q Consensus 256 kYLspeERe~YeV~IedGrL~y~~sG~~vdT-t~~~kWIFVmdtsg~LYVG~KkkG~FQHS--SFL---aGg~V~AAG~I 329 (521)
-|++-..-.-|-+-.++|+++|..+..-..+ .-.+..|||.+.+|.||+=....|....+ .+- ...++++.|.|
T Consensus 244 vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l 323 (377)
T TIGR03300 244 VYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYL 323 (377)
T ss_pred EEEEEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEE
Confidence 3443333333333334677777654211111 01355799999999999987777765432 221 23445566666
Q ss_pred EE--ecceeEEecCCCCCC
Q 009984 330 VA--HDGILEAIWPYSGHY 346 (521)
Q Consensus 330 ~V--knG~Lk~Isp~SGHY 346 (521)
.+ .+|.|..+...+|-.
T Consensus 324 ~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 324 VVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred EEEeCCCEEEEEECCCCCE
Confidence 66 468888888777643
No 8
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=58.58 E-value=37 Score=31.12 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=51.2
Q ss_pred EEeeCCcEEeccC------CCe------EEEEEcCCCcEEEeeccCCceecccCCCCCcceeeeeEEEecceeEEecCCC
Q 009984 276 VYRQTGMFVNTNE------DSK------WIFVLSTSRALYVGQKKKGVFQHSSFLSGGAITAAGRLVAHDGILEAIWPYS 343 (521)
Q Consensus 276 ~y~~sG~~vdTt~------~~k------WIFVmdtsg~LYVG~KkkG~FQHSSFLaGg~V~AAG~I~VknG~Lk~Isp~S 343 (521)
+|+++|+++.+.. .+. .++|.+.+|++++.+...+... +.|.... +-+
T Consensus 6 ~~d~~~~~~g~~~r~~~~~~~~~~~~~v~v~i~~~~~~iLl~kR~~~~~~----~Pg~w~~----------------~~g 65 (165)
T cd02885 6 LVDEDDNPIGTAEKLEAHLKGTLLHRAFSVFLFNSKGRLLLQRRALSKYT----FPGLWTN----------------TCC 65 (165)
T ss_pred EECCCCCCccccCHHHHhhcCCcceeEEEEEEEcCCCcEEEEeccCCCcc----CCCcccc----------------ccc
Confidence 5777777776654 233 4889999999999865433221 2232221 124
Q ss_pred CCCCCCHHHHHHHHHHHH-HcCCCCCCcee
Q 009984 344 GHYLPTEENFKEFVSFLE-EHSVDLTNVKR 372 (521)
Q Consensus 344 GHYRPt~enf~~Fl~~L~-e~GVDLs~Vk~ 372 (521)
||-.|.+.-....++-++ |-|+....+..
T Consensus 66 G~ie~GEt~~eaa~REl~EEtGl~~~~~~~ 95 (165)
T cd02885 66 SHPLPGEGVKDAAQRRLREELGITGDLLEL 95 (165)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCccchhh
Confidence 888899988889999987 56998766544
No 9
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=54.67 E-value=6.2 Score=29.12 Aligned_cols=17 Identities=29% Similarity=0.751 Sum_probs=11.6
Q ss_pred CCCCHHHHHHHHHHHHH
Q 009984 346 YLPTEENFKEFVSFLEE 362 (521)
Q Consensus 346 YRPt~enf~~Fl~~L~e 362 (521)
|+||.++|.+|++|++.
T Consensus 3 f~Pt~eEF~dp~~yi~~ 19 (34)
T PF02375_consen 3 FYPTMEEFKDPIKYISS 19 (34)
T ss_dssp E---HHHHS-HHHHHHH
T ss_pred ccCCHHHHhCHHHHHHH
Confidence 68999999999999875
No 10
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=49.71 E-value=40 Score=30.97 Aligned_cols=90 Identities=23% Similarity=0.360 Sum_probs=50.1
Q ss_pred hccCcccccceEEEEecCeEEEeeCC-cEEecc--CCCeEEEEEcCCCcEEEeeccCCceecccCC---------CCCcc
Q 009984 256 KYLGPKEREEFEVVVESGKLVYRQTG-MFVNTN--EDSKWIFVLSTSRALYVGQKKKGVFQHSSFL---------SGGAI 323 (521)
Q Consensus 256 kYLspeERe~YeV~IedGrL~y~~sG-~~vdTt--~~~kWIFVmdtsg~LYVG~KkkG~FQHSSFL---------aGg~V 323 (521)
-|..-.+..-|-+-+.+|+++|..+- ..+... -.+.-+||.+.++.||+=..+.|........ .....
T Consensus 39 v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~ 118 (238)
T PF13360_consen 39 VYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSP 118 (238)
T ss_dssp EEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEE
T ss_pred EEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCc
Confidence 44443444444444458888888752 111111 1234578888888888887777877766311 12222
Q ss_pred eeee-eEEE-e-cceeEEecCCCCC
Q 009984 324 TAAG-RLVA-H-DGILEAIWPYSGH 345 (521)
Q Consensus 324 ~AAG-~I~V-k-nG~Lk~Isp~SGH 345 (521)
...| .+.+ . +|.|..+.+..|.
T Consensus 119 ~~~~~~~~~~~~~g~l~~~d~~tG~ 143 (238)
T PF13360_consen 119 AVDGDRLYVGTSSGKLVALDPKTGK 143 (238)
T ss_dssp EEETTEEEEEETCSEEEEEETTTTE
T ss_pred eEecCEEEEEeccCcEEEEecCCCc
Confidence 2223 2333 2 6888887777774
No 11
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=47.92 E-value=10 Score=32.73 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=41.2
Q ss_pred EEEcCCCcEEEeeccCCceecccCCCCCcceeeeeEEEecceeEEecCCCCCCCCCHHHHHHHHHHHHHcCCCCCC
Q 009984 294 FVLSTSRALYVGQKKKGVFQHSSFLSGGAITAAGRLVAHDGILEAIWPYSGHYLPTEENFKEFVSFLEEHSVDLTN 369 (521)
Q Consensus 294 FVmdtsg~LYVG~KkkG~FQHSSFLaGg~V~AAG~I~VknG~Lk~Isp~SGHYRPt~enf~~Fl~~L~e~GVDLs~ 369 (521)
|++|.+|.||.|.+ .--|++-+--.|.-.+-.+.-++|.|.+ .-..+.+.|+..|++.+.
T Consensus 1 ~l~D~dGvl~~g~~----------~ipga~e~l~~L~~~g~~~~~lTNns~~------s~~~~~~~L~~~Gi~~~~ 60 (101)
T PF13344_consen 1 FLFDLDGVLYNGNE----------PIPGAVEALDALRERGKPVVFLTNNSSR------SREEYAKKLKKLGIPVDE 60 (101)
T ss_dssp EEEESTTTSEETTE----------E-TTHHHHHHHHHHTTSEEEEEES-SSS-------HHHHHHHHHHTTTT--G
T ss_pred CEEeCccEeEeCCC----------cCcCHHHHHHHHHHcCCCEEEEeCCCCC------CHHHHHHHHHhcCcCCCc
Confidence 78999999998743 2224455666666667789999999875 345677888999988653
No 12
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=44.52 E-value=16 Score=27.61 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhhhhhhhhcc
Q 009984 111 DAAATKLQKVYKSYRTRRNL 130 (521)
Q Consensus 111 ~~AA~~iQk~Yr~yRtRR~L 130 (521)
-=||..||..||.|+.||+-
T Consensus 9 ~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 9 FYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999863
No 13
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=43.78 E-value=1e+02 Score=28.18 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=38.4
Q ss_pred CeEEEEEcCCCcEEEeeccCCceecccCCCCCcceeeeeEEEecceeEEecCCCCCCCCCHHHHHHHHHHHH-HcCCCCC
Q 009984 290 SKWIFVLSTSRALYVGQKKKGVFQHSSFLSGGAITAAGRLVAHDGILEAIWPYSGHYLPTEENFKEFVSFLE-EHSVDLT 368 (521)
Q Consensus 290 ~kWIFVmdtsg~LYVG~KkkG~FQHSSFLaGg~V~AAG~I~VknG~Lk~Isp~SGHYRPt~enf~~Fl~~L~-e~GVDLs 368 (521)
+..++|+|.+|++++.+...+... ..|.....+ +||--+++ ....++.|+ |-|+++.
T Consensus 29 ~v~v~v~~~~g~vLl~kR~~~k~~----~PG~W~~~~----------------gG~v~~GE--~eaa~REl~EE~Gl~~~ 86 (158)
T TIGR02150 29 AFSVFLFNEEGQLLLQRRALSKIT----WPGVWTNSC----------------CSHPLPGE--LEAAIRRLREELGIPAD 86 (158)
T ss_pred EEEEEEEcCCCeEEEEeccCCCcC----CCCCccccc----------------cCCCCccc--HHHHHHHHHHHHCCCcc
Confidence 456899999999999865433221 233333221 25666666 377888875 6899988
Q ss_pred Cce
Q 009984 369 NVK 371 (521)
Q Consensus 369 ~Vk 371 (521)
.+.
T Consensus 87 ~~~ 89 (158)
T TIGR02150 87 DVP 89 (158)
T ss_pred ccc
Confidence 764
No 14
>cd00148 PROF Profilin binds actin monomers, membrane polyphosphoinositides such as PI(4,5)P2, and poly-L-proline. Profilin can inhibit actin polymerization into F-actin by binding to monomeric actin (G-actin) and terminal F-actin subunits, but - as a regulator of the cytoskeleton - it may also promote actin polymerization. It plays a role in the assembly of branched actin filament networks, by activating WASP via binding to WASP's proline rich domain. Profilin may link the cytoskeleton with major signalling pathways by interacting with components of the phosphatidylinositol cycle and Ras pathway.
Probab=42.72 E-value=22 Score=32.03 Aligned_cols=61 Identities=23% Similarity=0.367 Sum_probs=48.0
Q ss_pred cCCCCCcceeeeeEEEecceeEEecCCCCC-CCCCHHHHHHHHHHHHH------cCCCCCCceeccccCCC
Q 009984 316 SFLSGGAITAAGRLVAHDGILEAIWPYSGH-YLPTEENFKEFVSFLEE------HSVDLTNVKRCAIDEDS 379 (521)
Q Consensus 316 SFLaGg~V~AAG~I~VknG~Lk~Isp~SGH-YRPt~enf~~Fl~~L~e------~GVDLs~Vk~~~~d~d~ 379 (521)
++++.+.+..|..+..+||. +|..|.- +.++.+++..+++.+++ +|+-+..+|-..+..|.
T Consensus 9 ~L~~~g~~~~aAI~g~d~g~---vwA~s~~~f~~t~~E~~~i~~~f~d~~~~~~~Gi~l~G~KY~~l~~d~ 76 (127)
T cd00148 9 NLLGTGKVDSAAIVGHDDGS---VWAASAGGFNLTPEEVGTLVAGFKDPDGVFSTGLTLGGQKYMVIRADD 76 (127)
T ss_pred HHhhcCCcCEEEEEecCCCC---eEEecCCCCccCHHHHHHHHHHccCccccccCCEEECCeEEEEEecCc
Confidence 35666678888888887686 5888888 99999999999997664 78888888876666554
No 15
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=41.46 E-value=44 Score=23.89 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=15.4
Q ss_pred CeEEEeeC-CcEEeccC--CCeEEEEEcCCCcEEEe
Q 009984 273 GKLVYRQT-GMFVNTNE--DSKWIFVLSTSRALYVG 305 (521)
Q Consensus 273 GrL~y~~s-G~~vdTt~--~~kWIFVmdtsg~LYVG 305 (521)
|+++|..+ +..+.++. .+..+||.+.+|+||+=
T Consensus 1 G~~~W~~~~~~~~~~~~~v~~g~vyv~~~dg~l~al 36 (40)
T PF13570_consen 1 GKVLWSYDTGGPIWSSPAVAGGRVYVGTGDGNLYAL 36 (40)
T ss_dssp S-EEEEEE-SS---S--EECTSEEEEE-TTSEEEEE
T ss_pred CceeEEEECCCCcCcCCEEECCEEEEEcCCCEEEEE
Confidence 56666653 11222211 23457888888887763
No 16
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=41.11 E-value=1.5e+02 Score=26.08 Aligned_cols=65 Identities=18% Similarity=0.294 Sum_probs=43.1
Q ss_pred cceEEEEe-cCeEE-EeeCCcEEecc----CCC--eEEEEEcCCCcEEEeeccCCceecccCCCCCcceeeeeE
Q 009984 264 EEFEVVVE-SGKLV-YRQTGMFVNTN----EDS--KWIFVLSTSRALYVGQKKKGVFQHSSFLSGGAITAAGRL 329 (521)
Q Consensus 264 e~YeV~Ie-dGrL~-y~~sG~~vdTt----~~~--kWIFVmdtsg~LYVG~KkkG~FQHSSFLaGg~V~AAG~I 329 (521)
..|.+++. ||.|+ |+.+|..+-.+ ..+ ...-+|..+|+|.+-.. .+..-=+||-....+...|.-
T Consensus 19 ~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~-~~~~lW~Sf~~ptdt~L~~q~ 91 (114)
T PF01453_consen 19 GNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDS-SGNVLWQSFDYPTDTLLPGQK 91 (114)
T ss_dssp TTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEET-TSEEEEESTTSSS-EEEEEET
T ss_pred ccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEee-cceEEEeecCCCccEEEeccC
Confidence 45888886 99886 76666677444 222 56677777899999874 555556677777666655543
No 17
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=40.09 E-value=82 Score=25.23 Aligned_cols=59 Identities=12% Similarity=0.245 Sum_probs=40.1
Q ss_pred eEEEeeCCcEEeccCC-Ce--EEEEEcCCCcEEEee---ccCCceecccCCCCCcceeeeeEEEe
Q 009984 274 KLVYRQTGMFVNTNED-SK--WIFVLSTSRALYVGQ---KKKGVFQHSSFLSGGAITAAGRLVAH 332 (521)
Q Consensus 274 rL~y~~sG~~vdTt~~-~k--WIFVmdtsg~LYVG~---KkkG~FQHSSFLaGg~V~AAG~I~Vk 332 (521)
.+.|.++|++++.... +. -+++.+.++.|.|.. ...|.+...-=...|.+.+...|.|.
T Consensus 18 ~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 82 (85)
T cd04970 18 TFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVR 82 (85)
T ss_pred EEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEE
Confidence 4579999999876543 22 245566778999984 57899987644444556677777665
No 18
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=34.14 E-value=26 Score=26.96 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHHHH---cCCCCCCceeccc
Q 009984 346 YLPTEENFKEFVSFLEE---HSVDLTNVKRCAI 375 (521)
Q Consensus 346 YRPt~enf~~Fl~~L~e---~GVDLs~Vk~~~~ 375 (521)
|+||.++|..++.|++. .|-...=||+.+-
T Consensus 5 f~Pt~eEF~Dp~~yi~~i~~~~~~yGi~KIvPP 37 (42)
T smart00545 5 FYPTMEEFKDPLAYISKIRPQAEKYGICKVVPP 37 (42)
T ss_pred EcCCHHHHHCHHHHHHHHHHHHhhCCEEEEECC
Confidence 78999999999988874 4555555566543
No 19
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=33.38 E-value=38 Score=27.50 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCceeccccCC
Q 009984 347 LPTEENFKEFVSFLEEHSVDLTNVKRCAIDED 378 (521)
Q Consensus 347 RPt~enf~~Fl~~L~e~GVDLs~Vk~~~~d~d 378 (521)
+|+. +...++.|+++||+|++++..|+...
T Consensus 10 ~pG~--L~~vL~~f~~~~iNlt~IeSRP~~~~ 39 (74)
T cd04904 10 EVGA--LARALKLFEEFGVNLTHIESRPSRRN 39 (74)
T ss_pred CCcH--HHHHHHHHHHCCCcEEEEECCCCCCC
Confidence 5665 99999999999999999998887654
No 20
>smart00701 PGRP Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. The bacteriophage molecule, but not its moth homologue, has been shown to have N-acetylmuramoyl-L-alanine amidase activity. One member of this family, Tag7, is a cytokine.
Probab=33.22 E-value=1.1e+02 Score=28.35 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=32.2
Q ss_pred eEEEEEcCCCcEEEeecc--CCceecccCCCCCcceeeeeEEEecceeEEecCCCCCCCCCHHHHHHHHHHHH
Q 009984 291 KWIFVLSTSRALYVGQKK--KGVFQHSSFLSGGAITAAGRLVAHDGILEAIWPYSGHYLPTEENFKEFVSFLE 361 (521)
Q Consensus 291 kWIFVmdtsg~LYVG~Kk--kG~FQHSSFLaGg~V~AAG~I~VknG~Lk~Isp~SGHYRPt~enf~~Fl~~L~ 361 (521)
-+=|+++.+|++|.|..- .|. |. .| .-++.|.|. +--.-..+.||.+++......|.
T Consensus 64 gYhflI~~dG~IyeGR~~~~~ga--h~---~g---~N~~sigI~------~iG~~~~~~pt~~q~~al~~Li~ 122 (142)
T smart00701 64 GYNFLVGGDGKVYEGRGWNVVGA--HT---GG---YNDISLGIA------FIGNFTDKLPTDAALDAAQDLLA 122 (142)
T ss_pred CCeEEEcCCCEEEECCCCCcccc--cc---cC---CCCCeEEEE------EEeCCCCCCCcHHHHHHHHHHHH
Confidence 467999999999999642 121 21 11 112223332 11222457999988876665554
No 21
>PF00235 Profilin: Profilin; InterPro: IPR002097 Profilin is a small eukaryotic protein that binds to monomeric actin (G-actin) in a 1:1 ratio thus preventing the polymerisation of actin into filaments (F-actin). It can also in certain circumstance promote actin polymerisation. Profilin also binds to polyphosphoinositides such as PIP2. Overall sequence similarity among profilin from organisms which belong to different phyla (ranging from fungi to mammals) is low, but the N-terminal region is relatively well conserved. That region is thought to be involved in the binding to actin. A protein structurally similar to profilin is present in the genome of Variola virus and Vaccinia virus (gene A42R). Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ara t 8, Bet v 2, Cyn d 12, Hel a 2, Mer a 1 and Phl p 11.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0015629 actin cytoskeleton; PDB: 1ACF_A 3NEC_C 2V8F_B 2V8C_A 2VK3_A 2JKF_A 2JKG_A 1F2K_B 2ACG_A 1YPR_B ....
Probab=31.83 E-value=15 Score=31.95 Aligned_cols=59 Identities=22% Similarity=0.393 Sum_probs=44.5
Q ss_pred cCCCCCcceeeeeEEEecceeEEecCCCCCC-CCCHHHHHHHHHHHHH------cCCCCCCceeccccCC
Q 009984 316 SFLSGGAITAAGRLVAHDGILEAIWPYSGHY-LPTEENFKEFVSFLEE------HSVDLTNVKRCAIDED 378 (521)
Q Consensus 316 SFLaGg~V~AAG~I~VknG~Lk~Isp~SGHY-RPt~enf~~Fl~~L~e------~GVDLs~Vk~~~~d~d 378 (521)
.+++-+.+..|+.+- .|| .+|..|+.+ .++++++..+++.|++ .|+.+..+|-.-+..|
T Consensus 9 ~L~~~~~~~~aaI~~-~dG---~vwA~s~~f~~~~~~E~~~i~~~f~~~~~~~~~gi~l~G~kY~~~~~d 74 (121)
T PF00235_consen 9 QLIGTGNITKAAIIG-SDG---SVWASSPGFSNISPEEAKAIIKAFNNPSKFPSNGITLGGKKYIVLRAD 74 (121)
T ss_dssp HHHTTSSESEEEEEE-TTS---SEEEEETTGGGCSHHHHHHHHHHHHSSSHHHHH-EEETTEEEEEEEEE
T ss_pred HhcccCcEeEEEEEc-CCC---CEEEecCCCCCCCHHHHHHHHHHhcCchhcccCCeEEcCcEeEEEecC
Confidence 344556688888888 999 466777778 9999999999998776 6888888876555433
No 22
>COG4632 EpsL Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase [Carbohydrate transport and metabolism]
Probab=31.48 E-value=62 Score=34.28 Aligned_cols=63 Identities=21% Similarity=0.186 Sum_probs=40.5
Q ss_pred EEEEecCeEEEeeCCcEEeccCCCeEEEEEcCCCcEEEeeccCCceecccCCCCCc-c-eeeeeEEEecce
Q 009984 267 EVVVESGKLVYRQTGMFVNTNEDSKWIFVLSTSRALYVGQKKKGVFQHSSFLSGGA-I-TAAGRLVAHDGI 335 (521)
Q Consensus 267 eV~IedGrL~y~~sG~~vdTt~~~kWIFVmdtsg~LYVG~KkkG~FQHSSFLaGg~-V-~AAG~I~VknG~ 335 (521)
=++|.||+|+|.+|=.-+. ..+--|+++.+|+|-|+-.... -+-++.+++ + .+-|-+.|+||+
T Consensus 156 GfqisdGklvkp~dw~~~t---~ae~~~aftkdG~lkVyg~~sp---a~ll~sngaeasf~fgp~LIkdgk 220 (320)
T COG4632 156 GFQISDGKLVKPYDWAGYT---GAEACVAFTKDGTLKVYGRESP---ADLLISNGAEASFAFGPWLIKDGK 220 (320)
T ss_pred EEEEeCCeEeecCChhhhc---cccceEEEccCCcEEEcCCCCh---HHHHHhccceeeeeeccEEEecCC
Confidence 6778999999977532222 2334678888999999932111 112334433 4 678999999994
No 23
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=30.32 E-value=1.8e+02 Score=27.31 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=39.1
Q ss_pred eEEEEEcCCCcEEEeeccCCceecccCCCCCcceeeeeEEEecceeEEecCCCCCCCCCHHHHHHHHHHHH-HcCCCCCC
Q 009984 291 KWIFVLSTSRALYVGQKKKGVFQHSSFLSGGAITAAGRLVAHDGILEAIWPYSGHYLPTEENFKEFVSFLE-EHSVDLTN 369 (521)
Q Consensus 291 kWIFVmdtsg~LYVG~KkkG~FQHSSFLaGg~V~AAG~I~VknG~Lk~Isp~SGHYRPt~enf~~Fl~~L~-e~GVDLs~ 369 (521)
..++|++.+|++++.+...+.. + +-|.... +-.||-.|.+.-....++.|. |-|++..+
T Consensus 37 v~v~i~~~~g~vLL~rR~~~~~---~-~PG~w~~----------------~~gG~ve~GEt~~~aa~REl~EEtGl~~~~ 96 (184)
T PRK03759 37 FSCYLFDADGRLLVTRRALSKK---T-WPGVWTN----------------SCCGHPQPGESLEDAVIRRCREELGVEITD 96 (184)
T ss_pred EEEEEEcCCCeEEEEEccCCCC---C-CCCcccc----------------cccCCCCCCCCHHHHHHHHHHHHhCCCccc
Confidence 3588888888888875432211 1 1222221 113999999988888889886 67998865
Q ss_pred c
Q 009984 370 V 370 (521)
Q Consensus 370 V 370 (521)
+
T Consensus 97 ~ 97 (184)
T PRK03759 97 L 97 (184)
T ss_pred c
Confidence 4
No 24
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=30.22 E-value=1.6e+02 Score=31.78 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=0.0
Q ss_pred ccCcccccceEEEEecCeEEEeeCCcEEeccCC----------------C-eEEEEEcCCCcEEEeeccCCcee------
Q 009984 257 YLGPKEREEFEVVVESGKLVYRQTGMFVNTNED----------------S-KWIFVLSTSRALYVGQKKKGVFQ------ 313 (521)
Q Consensus 257 YLspeERe~YeV~IedGrL~y~~sG~~vdTt~~----------------~-kWIFVmdtsg~LYVG~KkkG~FQ------ 313 (521)
|++..+..-|-+-..+|+++|. +++... + .-|||-+.+|.||+=..+.|...
T Consensus 65 y~~~~~g~l~AlD~~tG~~~W~-----~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 65 YFTTSHSALFALDAATGKVLWR-----YDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred EEeCCCCcEEEEECCCChhhce-----eCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Q ss_pred ----cccCCCCCcceeeeeEEEe-----------cceeEEecCCCCCCC
Q 009984 314 ----HSSFLSGGAITAAGRLVAH-----------DGILEAIWPYSGHYL 347 (521)
Q Consensus 314 ----HSSFLaGg~V~AAG~I~Vk-----------nG~Lk~Isp~SGHYR 347 (521)
+.-.+.+.+++..|.+.+- +|.|..|....|..+
T Consensus 140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCcee
No 25
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=29.74 E-value=93 Score=24.63 Aligned_cols=27 Identities=33% Similarity=0.773 Sum_probs=16.1
Q ss_pred ceEEEEecCeEEEeeCCcEEeccCCCeEEEEEcCCCcEE
Q 009984 265 EFEVVVESGKLVYRQTGMFVNTNEDSKWIFVLSTSRALY 303 (521)
Q Consensus 265 ~YeV~IedGrL~y~~sG~~vdTt~~~kWIFVmdtsg~LY 303 (521)
-|+|.+.+|.++|- +++++++|+ |+||
T Consensus 25 lyeV~~~~~~i~Y~--------~~dg~yli~----G~l~ 51 (57)
T PF10411_consen 25 LYEVVLKGGGILYV--------DEDGRYLIQ----GQLY 51 (57)
T ss_dssp EEEEEE-TTEEEEE--------ETTSSEEEE----S-EE
T ss_pred eEEEEECCCeEEEE--------cCCCCEEEE----eEEE
Confidence 68888877766654 445566665 6665
No 26
>PF13509 S1_2: S1 domain; PDB: 3GO5_A.
Probab=29.35 E-value=45 Score=26.55 Aligned_cols=34 Identities=47% Similarity=0.670 Sum_probs=21.4
Q ss_pred CCceEEeecCCCCccCCC--CCChhhhhhhhhhccCcccccceEEEE
Q 009984 226 QPFFYWLDVGDGKEVNLE--KCPRNVLQRQCIKYLGPKEREEFEVVV 270 (521)
Q Consensus 226 q~FFyWLD~GeGk~v~le--~CpR~kL~~q~IkYLspeERe~YeV~I 270 (521)
.+|.|+||.|++++|-|+ +||. ..++-+.++|+|
T Consensus 13 ~~~g~fL~~~~~~~vlLp~~e~~~-----------~~~~Gd~v~VFv 48 (61)
T PF13509_consen 13 NEFGYFLDDGEGKEVLLPKSEVPE-----------PLKVGDEVEVFV 48 (61)
T ss_dssp -SSEEEEEETT-EEEEEEGGG-----------------TTSEEEEEE
T ss_pred eCCEEEEECCCCCEEEechHHcCC-----------CCCCCCEEEEEE
Confidence 368899999999998886 4552 256677788876
No 27
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=29.15 E-value=1.4e+02 Score=25.27 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=36.4
Q ss_pred eEEEeeCCcEEeccCCCeEEEEE----cCCCcEEEee---ccCCceecccCCCCCcceeeeeEEEe
Q 009984 274 KLVYRQTGMFVNTNEDSKWIFVL----STSRALYVGQ---KKKGVFQHSSFLSGGAITAAGRLVAH 332 (521)
Q Consensus 274 rL~y~~sG~~vdTt~~~kWIFVm----dtsg~LYVG~---KkkG~FQHSSFLaGg~V~AAG~I~Vk 332 (521)
.+.|.+||++++...++. -|.+ +.++.|.|.. +..|.+...-=..=+.+.+...|.|.
T Consensus 18 ~~~W~~dg~~i~~~~~~~-~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~ 82 (85)
T cd05853 18 VFTWSFNGHLIDFQKDGD-HFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVR 82 (85)
T ss_pred EEEEEECCEECcccCCCc-cEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEe
Confidence 467999999998643332 2433 4568899883 46677765444444555555566554
No 28
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.30 E-value=30 Score=40.94 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHhhhhhhhhhcccC
Q 009984 109 ELDAAATKLQKVYKSYRTRRNLAD 132 (521)
Q Consensus 109 ~~~~AA~~iQk~Yr~yRtRR~Lad 132 (521)
..++||..||++.|||=+|++++.
T Consensus 28 rr~~aa~~iq~~lrsyl~Rkk~~~ 51 (1096)
T KOG4427|consen 28 RREAAALFIQRVLRSYLVRKKAQI 51 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999998764
No 29
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=27.51 E-value=34 Score=38.38 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhhhhhhhcccC
Q 009984 111 DAAATKLQKVYKSYRTRRNLAD 132 (521)
Q Consensus 111 ~~AA~~iQk~Yr~yRtRR~Lad 132 (521)
-+||..|||-||.|-.|+++.-
T Consensus 17 ikaAilIQkWYRr~~ARle~rr 38 (631)
T KOG0377|consen 17 IKAAILIQKWYRRYEARLEARR 38 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999987643
No 30
>COG4337 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.89 E-value=1.1e+02 Score=30.50 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=19.7
Q ss_pred CCeEEEEEcCCCcEEEeeccCCceecccCC
Q 009984 289 DSKWIFVLSTSRALYVGQKKKGVFQHSSFL 318 (521)
Q Consensus 289 ~~kWIFVmdtsg~LYVG~KkkG~FQHSSFL 318 (521)
+-+|.|--|..|.|-|- .||||+-
T Consensus 179 DKtWaFkKdd~G~lRIv------~HHSSLP 202 (206)
T COG4337 179 DKTWAFKKDDQGQLRIV------LHHSSLP 202 (206)
T ss_pred eceeeeeccCCCcEEEE------EecCCCC
Confidence 46799999999998775 4899974
No 31
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=26.00 E-value=1.7e+02 Score=23.95 Aligned_cols=59 Identities=12% Similarity=0.181 Sum_probs=40.9
Q ss_pred eEEEeeCCcEEeccC-CCeE-E-EEEcCCCcEEEe---eccCCceecccCCCCCcceeeeeEEEe
Q 009984 274 KLVYRQTGMFVNTNE-DSKW-I-FVLSTSRALYVG---QKKKGVFQHSSFLSGGAITAAGRLVAH 332 (521)
Q Consensus 274 rL~y~~sG~~vdTt~-~~kW-I-FVmdtsg~LYVG---~KkkG~FQHSSFLaGg~V~AAG~I~Vk 332 (521)
.+.|.++|++++... .+++ + .|.+..+.|.|. ....|.+...--...|.+.+.-.|.|.
T Consensus 18 ~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~ 82 (85)
T cd05854 18 TFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVR 82 (85)
T ss_pred EEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEE
Confidence 578999999987654 3333 2 233345788887 357899887766677777887777775
No 32
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.11 E-value=33 Score=40.97 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHhhhhhhhhhcc
Q 009984 109 ELDAAATKLQKVYKSYRTRRNL 130 (521)
Q Consensus 109 ~~~~AA~~iQk~Yr~yRtRR~L 130 (521)
.++.+|++||+..||||.|++-
T Consensus 27 k~e~~av~vQs~~Rg~~~r~~~ 48 (1001)
T KOG0942|consen 27 KQEKNAVKVQSFWRGFRVRHNQ 48 (1001)
T ss_pred HHhccchHHHHHHHHHHHHHHH
Confidence 4668999999999999999864
No 33
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=23.51 E-value=3.3e+02 Score=30.22 Aligned_cols=97 Identities=13% Similarity=0.191 Sum_probs=61.2
Q ss_pred hhhhhhhccCcccccceEEEEecCeEEEeeCCcE---Ee------ccC-----CCeEEEEEcCCCcEEEeeccCCcee--
Q 009984 250 LQRQCIKYLGPKEREEFEVVVESGKLVYRQTGMF---VN------TNE-----DSKWIFVLSTSRALYVGQKKKGVFQ-- 313 (521)
Q Consensus 250 L~~q~IkYLspeERe~YeV~IedGrL~y~~sG~~---vd------Tt~-----~~kWIFVmdtsg~LYVG~KkkG~FQ-- 313 (521)
+....+.|++-....-|-|-...|+++|..+-.. +. +.. .+.-|||.+.++.||+=..+.|...
T Consensus 66 vv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 66 LVVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred EEECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 3445667776555545555556899999875321 10 000 1235888888999998755555442
Q ss_pred -----c--ccCCCCCcceeeeeEEEe--------cceeEEecCCCCCC
Q 009984 314 -----H--SSFLSGGAITAAGRLVAH--------DGILEAIWPYSGHY 346 (521)
Q Consensus 314 -----H--SSFLaGg~V~AAG~I~Vk--------nG~Lk~Isp~SGHY 346 (521)
| .....+.++++-|.|.|- +|.|.++...+|.-
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred cccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCce
Confidence 1 122445677777877773 58999999999864
No 34
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=23.24 E-value=2.1e+02 Score=25.11 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=25.4
Q ss_pred eEEEeeCCcEEeccCCCeEEEEEcCCCcEEEee---ccCCce
Q 009984 274 KLVYRQTGMFVNTNEDSKWIFVLSTSRALYVGQ---KKKGVF 312 (521)
Q Consensus 274 rL~y~~sG~~vdTt~~~kWIFVmdtsg~LYVG~---KkkG~F 312 (521)
.+.|.+++.+.....+.. .||...+|+||+.. ...|.+
T Consensus 35 ~~~W~k~~~~~~~~~d~r-~~~~~~~G~L~fs~v~~~D~g~Y 75 (96)
T cd05727 35 SYRWLLNEFPNFIPEDGR-RFVSQTNGNLYIAKVEASDRGNY 75 (96)
T ss_pred EEEEEECCcccccccCCC-eEEeCCCCcEEEeecCHhhCcee
Confidence 456888887654433333 47878899999994 344554
No 35
>PF15537 Toxin_59: Putative toxin 59
Probab=23.18 E-value=70 Score=30.06 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=33.2
Q ss_pred CeEEEEEcCCCcEEEeecc----CCceecccCC----CCCcceeeeeEEE-ecceeEEecCCCCCCC
Q 009984 290 SKWIFVLSTSRALYVGQKK----KGVFQHSSFL----SGGAITAAGRLVA-HDGILEAIWPYSGHYL 347 (521)
Q Consensus 290 ~kWIFVmdtsg~LYVG~Kk----kG~FQHSSFL----aGg~V~AAG~I~V-knG~Lk~Isp~SGHYR 347 (521)
+.--||.|...+.|+--.. .+.-+|--++ +-.+++--|+|.= -||.|. -.-+||||-
T Consensus 50 G~~eFVFDP~~~~Fa~G~~~~~~~~~~~H~~la~~iGA~~s~vvGGr~~R~~~G~l~-TnewSGHyg 115 (125)
T PF15537_consen 50 GSIEFVFDPKTNRFAVGSPRDYGIDVSGHDQLARAIGADESTVVGGRFSRGPNGELS-TNEWSGHYG 115 (125)
T ss_pred CCccEEEcCCcCeEeecCCcccccccchHHHHHHhcCCCCCeeEeeEEEecCCCCEe-ecccccccc
Confidence 4446777876555544222 2455564433 3345666677766 577663 356899994
No 36
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.88 E-value=66 Score=34.23 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=24.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCC
Q 009984 341 PYSGHYLPTEENFKEFVSFLEEHSVDLT 368 (521)
Q Consensus 341 p~SGHYRPt~enf~~Fl~~L~e~GVDLs 368 (521)
+.+.|.+|+.+...+|.+.|+.+||..+
T Consensus 283 ~g~~~~rp~~~~i~~f~~~L~~~gi~~t 310 (344)
T PRK14464 283 DGDAYRRPSGERIVAMARYLHRRGVLTK 310 (344)
T ss_pred CCCCccCCCHHHHHHHHHHHHHCCceEE
Confidence 3568999999999999999999998765
No 37
>PF13128 DUF3954: Protein of unknown function (DUF3954)
Probab=22.84 E-value=82 Score=25.52 Aligned_cols=20 Identities=35% Similarity=0.473 Sum_probs=14.2
Q ss_pred eeeEEEecceeEEe-cCCCCC
Q 009984 326 AGRLVAHDGILEAI-WPYSGH 345 (521)
Q Consensus 326 AG~I~VknG~Lk~I-sp~SGH 345 (521)
-|..+|+||.|..| =|.|||
T Consensus 10 ngiYiV~~G~v~~i~pP~sGf 30 (50)
T PF13128_consen 10 NGIYIVKDGEVTFIEPPESGF 30 (50)
T ss_pred CeEEEEECCeEEEcCCCCCCc
Confidence 46677788888888 455665
No 38
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=20.09 E-value=3.7e+02 Score=31.72 Aligned_cols=96 Identities=14% Similarity=0.195 Sum_probs=59.9
Q ss_pred hhhhhhhccCcccccceEEEEecCeEEEeeCCcE-Ee---------------c-------------cCCCeEEEEEcCCC
Q 009984 250 LQRQCIKYLGPKEREEFEVVVESGKLVYRQTGMF-VN---------------T-------------NEDSKWIFVLSTSR 300 (521)
Q Consensus 250 L~~q~IkYLspeERe~YeV~IedGrL~y~~sG~~-vd---------------T-------------t~~~kWIFVmdtsg 300 (521)
+.-..+.|+.-....-|-+--..|+++|+.+-+. ++ + .-.+.-|||.+.++
T Consensus 191 lvvgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg 270 (764)
T TIGR03074 191 LKVGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA 270 (764)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC
Confidence 4556677776544433333334899998875221 11 0 01234789999999
Q ss_pred cEEEeeccCCceecc--------------------cCCCCCcceeeeeEEEe------------cceeEEecCCCCC
Q 009984 301 ALYVGQKKKGVFQHS--------------------SFLSGGAITAAGRLVAH------------DGILEAIWPYSGH 345 (521)
Q Consensus 301 ~LYVG~KkkG~FQHS--------------------SFLaGg~V~AAG~I~Vk------------nG~Lk~Isp~SGH 345 (521)
+||+=.-+.|+..-+ -...+.++++-|.|+|- +|.|.++...+|.
T Consensus 271 ~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk 347 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA 347 (764)
T ss_pred eEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence 999976666665421 01345567777777774 5889999988885
Done!