Query 009984
Match_columns 521
No_of_seqs 167 out of 186
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 17:19:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009984.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009984hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kxw_B Sodium channel protein 95.2 0.01 3.5E-07 40.7 2.5 22 109-130 4-25 (27)
2 2l53_B CAM, voltage-gated sodi 95.2 0.011 3.9E-07 41.7 2.6 24 109-132 4-27 (31)
3 2ix7_C Myosin-5A; contractIle 92.1 0.081 2.8E-06 40.0 2.6 37 109-145 3-41 (58)
4 1n2d_C IQ2 and IQ3 motifs from 89.5 0.16 5.3E-06 37.0 2.0 19 111-129 28-46 (48)
5 4dck_A Sodium channel protein 78.6 0.85 2.9E-05 42.6 2.1 23 109-131 128-150 (168)
6 2ix7_C Myosin-5A; contractIle 78.0 1.1 3.6E-05 33.8 2.1 22 110-131 27-48 (58)
7 1n2d_C IQ2 and IQ3 motifs from 78.0 0.99 3.4E-05 32.7 1.9 22 111-132 3-24 (48)
8 3q7m_A Lipoprotein YFGL, BAMB; 62.9 19 0.00066 33.6 7.4 91 256-346 242-340 (376)
9 3dve_B Voltage-dependent N-typ 53.8 4.9 0.00017 26.9 1.2 17 112-128 6-22 (23)
10 3ohg_A Uncharacterized protein 52.1 16 0.00055 36.2 5.2 64 263-337 109-174 (285)
11 1kk8_A Myosin heavy chain, str 50.7 8.1 0.00028 43.5 3.1 36 110-145 778-818 (837)
12 2be1_A Serine/threonine-protei 50.2 17 0.00058 36.4 5.1 95 251-345 8-132 (339)
13 3dvk_B Voltage-dependent R-typ 47.6 9.1 0.00031 25.6 1.7 17 112-128 7-23 (23)
14 2dfs_A Myosin-5A; myosin-V, in 45.8 8.4 0.00029 44.4 2.3 36 110-145 790-829 (1080)
15 3no2_A Uncharacterized protein 45.6 64 0.0022 29.8 7.9 23 436-458 246-268 (276)
16 3bxl_B CAM, voltage-dependent 44.8 10 0.00036 26.0 1.7 17 113-129 4-20 (26)
17 3q7m_A Lipoprotein YFGL, BAMB; 43.9 35 0.0012 31.8 5.8 51 290-340 318-375 (376)
18 2bl0_A Major plasmodial myosin 41.6 20 0.00067 27.5 3.1 21 110-130 29-49 (63)
19 2l60_A Peptide YY; GPCR ligand 39.2 24 0.00083 26.4 3.1 29 180-209 12-41 (41)
20 1wdc_A Scallop myosin; calcium 37.4 25 0.00085 26.9 3.1 19 111-129 32-50 (64)
21 1f8p_A Neuropeptide Y (PNPY); 34.0 13 0.00044 27.3 0.9 28 181-209 9-37 (37)
22 2dfs_A Myosin-5A; myosin-V, in 32.0 26 0.00089 40.4 3.5 22 110-131 838-859 (1080)
23 1kk8_A Myosin heavy chain, str 32.0 18 0.00063 40.7 2.2 27 111-146 805-831 (837)
24 3g43_E Voltage-dependent L-typ 25.8 27 0.00092 29.4 1.6 19 111-129 63-81 (81)
25 2bf9_A Pancreatic hormone; tur 24.9 72 0.0025 23.3 3.5 27 181-208 9-36 (36)
26 1w6s_A Methanol dehydrogenase 24.6 1.1E+02 0.0039 32.4 6.6 95 251-345 60-193 (599)
27 1yiq_A Quinohemoprotein alcoho 24.5 1.1E+02 0.0038 32.6 6.4 95 251-345 68-194 (689)
28 3gn4_A Myosin-VI; unconvention 24.3 34 0.0012 31.5 2.2 21 110-130 44-64 (148)
29 1w7j_A Myosin VA; motor protei 24.2 30 0.001 38.7 2.2 21 110-130 767-787 (795)
30 3mez_B Mannose-specific lectin 23.8 3.1E+02 0.011 22.6 8.1 44 264-307 24-74 (113)
31 3sao_A Extracellular fatty aci 23.1 1.6E+02 0.0056 25.1 6.2 39 340-378 112-150 (160)
32 3mez_A Mannose-specific lectin 22.8 3E+02 0.01 22.7 7.6 43 264-307 20-67 (111)
33 3nok_A Glutaminyl cyclase; bet 22.3 1.6E+02 0.0055 28.9 6.6 83 263-345 106-212 (268)
34 4h3o_A Lectin; cadmium, plant 21.6 3.4E+02 0.011 22.2 8.7 43 265-307 20-68 (105)
35 1kb0_A Quinohemoprotein alcoho 21.3 1.4E+02 0.0047 31.7 6.4 95 251-345 75-201 (677)
36 1bba_A Bovine pancreatic polyp 21.2 78 0.0027 23.1 3.1 27 181-208 9-36 (36)
37 1qbf_A Peptide YY, PYY; PP-fol 21.2 13 0.00043 27.4 -1.1 28 181-209 9-37 (37)
38 2ad6_A Methanol dehydrogenase 20.6 2.4E+02 0.0082 29.3 7.9 95 251-345 60-187 (571)
39 3ocp_A PRKG1 protein; serine/t 20.5 1.8E+02 0.006 23.2 5.5 45 235-279 1-60 (139)
40 3kff_A MUP 4, major urinary pr 20.3 3.3E+02 0.011 23.2 7.5 38 340-377 118-155 (162)
41 2hz6_A Endoplasmic reticulum t 20.1 43 0.0015 32.3 2.0 76 271-346 27-114 (369)
No 1
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=95.24 E-value=0.01 Score=40.68 Aligned_cols=22 Identities=18% Similarity=0.495 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHhhhhhhhhhcc
Q 009984 109 ELDAAATKLQKVYKSYRTRRNL 130 (521)
Q Consensus 109 ~~~~AA~~iQk~Yr~yRtRR~L 130 (521)
+.+.||+.||+.||+|..||.+
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~~~ 25 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQKV 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5678999999999999999865
No 2
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=95.16 E-value=0.011 Score=41.74 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhhhhhhhhhcccC
Q 009984 109 ELDAAATKLQKVYKSYRTRRNLAD 132 (521)
Q Consensus 109 ~~~~AA~~iQk~Yr~yRtRR~Lad 132 (521)
+.+-||+.||+.||+|+-||.+..
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~~~~ 27 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRSLKH 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 567899999999999999998754
No 3
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=92.09 E-value=0.081 Score=40.02 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhhhhhhhhhcccCc--chhhHHHHHHHH
Q 009984 109 ELDAAATKLQKVYKSYRTRRNLADC--AVVVEELWWKAL 145 (521)
Q Consensus 109 ~~~~AA~~iQk~Yr~yRtRR~Lad~--av~~~~~Ww~al 145 (521)
....||++||+.||+|..|+..... +++.-+.||...
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~ 41 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGY 41 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999876543 455556666653
No 4
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=89.55 E-value=0.16 Score=36.97 Aligned_cols=19 Identities=37% Similarity=0.392 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhhhhhhhhc
Q 009984 111 DAAATKLQKVYKSYRTRRN 129 (521)
Q Consensus 111 ~~AA~~iQk~Yr~yRtRR~ 129 (521)
+.||++||+.+|||..|+.
T Consensus 28 ~~aai~IQ~~~Rg~~~Rk~ 46 (48)
T 1n2d_C 28 VNCATLLQAAYRGHSIRAN 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHh
Confidence 4599999999999998864
No 5
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=78.64 E-value=0.85 Score=42.56 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHhhhhhhhhhccc
Q 009984 109 ELDAAATKLQKVYKSYRTRRNLA 131 (521)
Q Consensus 109 ~~~~AA~~iQk~Yr~yRtRR~La 131 (521)
....||..||+.||.|+-||++.
T Consensus 128 ~e~~aA~~IQra~R~~~~r~~~~ 150 (168)
T 4dck_A 128 HEEVSAMVIQRAFRRHLLQRSLK 150 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 46679999999999999997654
No 6
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=77.97 E-value=1.1 Score=33.82 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhhhhhhhccc
Q 009984 110 LDAAATKLQKVYKSYRTRRNLA 131 (521)
Q Consensus 110 ~~~AA~~iQk~Yr~yRtRR~La 131 (521)
...||++||..+|||..|+.+.
T Consensus 27 ~r~aai~IQ~~~Rg~~aR~~~~ 48 (58)
T 2ix7_C 27 MQRAAITVQRYVRGYQARCYAK 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999998764
No 7
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=77.95 E-value=0.99 Score=32.66 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhhhhhhhcccC
Q 009984 111 DAAATKLQKVYKSYRTRRNLAD 132 (521)
Q Consensus 111 ~~AA~~iQk~Yr~yRtRR~Lad 132 (521)
..||+.||+.+|||-.|++...
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~ 24 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVND 24 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999988754
No 8
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=62.89 E-value=19 Score=33.57 Aligned_cols=91 Identities=15% Similarity=0.183 Sum_probs=53.2
Q ss_pred hccCcccccceEEEEecCeEEEeeCCc-EEeccCCCeEEEEEcCCCcEEEeeccCCceecccC-----CCCCcceeeeeE
Q 009984 256 KYLGPKEREEFEVVVESGKLVYRQTGM-FVNTNEDSKWIFVLSTSRALYVGQKKKGVFQHSSF-----LSGGAITAAGRL 329 (521)
Q Consensus 256 kYLspeERe~YeV~IedGrL~y~~sG~-~vdTt~~~kWIFVmdtsg~LYVG~KkkG~FQHSSF-----LaGg~V~AAG~I 329 (521)
.|++.....-|-+..++|+++|...-. ...-.-.+..+||.+.+|.||+=..+.|......- ....++++-|.|
T Consensus 242 v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l 321 (376)
T 3q7m_A 242 VFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNL 321 (376)
T ss_dssp EEEECTTSCEEEEETTTCCEEEEECCCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEE
T ss_pred EEEEecCcEEEEEECCCCcEEeeccCCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEE
Confidence 344433333333333467777765421 11111124568888888888887767777654322 123456677777
Q ss_pred EEe--cceeEEecCCCCCC
Q 009984 330 VAH--DGILEAIWPYSGHY 346 (521)
Q Consensus 330 ~Vk--nG~Lk~Isp~SGHY 346 (521)
.+- +|.|..+.+.+|..
T Consensus 322 ~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 322 VVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp EEECTTSEEEEEETTTCCE
T ss_pred EEEeCCCeEEEEECCCCcE
Confidence 774 58899999988853
No 9
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=53.81 E-value=4.9 Score=26.87 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=15.3
Q ss_pred HHHHHHHHhhhhhhhhh
Q 009984 112 AAATKLQKVYKSYRTRR 128 (521)
Q Consensus 112 ~AA~~iQk~Yr~yRtRR 128 (521)
=||..||..||.+|.||
T Consensus 6 YAallI~d~~r~~k~~~ 22 (23)
T 3dve_B 6 YAALMIFDFYKQNKTSR 22 (26)
T ss_dssp HHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 48999999999999886
No 10
>3ohg_A Uncharacterized protein from DUF2233 family; structural genomics, unknown function, joint center for STRU genomics, JCSG; HET: MSE; 1.80A {Bacteroides ovatus}
Probab=52.14 E-value=16 Score=36.17 Aligned_cols=64 Identities=16% Similarity=0.145 Sum_probs=36.7
Q ss_pred ccceEEEEecCeEEEeeCCcEEeccCCCeEEEEEcCCCcEEEeeccCCceecccCCC-C-CcceeeeeEEEecceeE
Q 009984 263 REEFEVVVESGKLVYRQTGMFVNTNEDSKWIFVLSTSRALYVGQKKKGVFQHSSFLS-G-GAITAAGRLVAHDGILE 337 (521)
Q Consensus 263 Re~YeV~IedGrL~y~~sG~~vdTt~~~kWIFVmdtsg~LYVG~KkkG~FQHSSFLa-G-g~V~AAG~I~VknG~Lk 337 (521)
+...=++|+||++++...+. ....+|.++.+|+++++.... ++ .+. + .-++.+|-+.|+||++.
T Consensus 109 ~~P~G~~I~nG~~i~~~~~~------~~~~~f~i~~dG~~~I~~~~~--~~---~~~~~~~~av~~gp~Lv~nG~~~ 174 (285)
T 3ohg_A 109 RRVMGLFYKDGVCINSQYFE------GHDEVLYQLKNGETYVGQADE--AL---AHEANLLHALGGYGLLVKDGVVQ 174 (285)
T ss_dssp TEESSCEEETTEEEECCCCT------TCCEEEEEETTSCEEEEEHHH--HH---TTGGGEEEEEEESCEEEETTEEC
T ss_pred CceeEEEEECCEEEecCCCC------CcceEEEEeeCCeEEEEecch--hh---hhhcCccEEEEcchhheECCeEc
Confidence 34444556666665443211 234689999999999995310 10 000 0 12666677778888773
No 11
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=50.69 E-value=8.1 Score=43.50 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhhhhhhhhcccC-----cchhhHHHHHHHH
Q 009984 110 LDAAATKLQKVYKSYRTRRNLAD-----CAVVVEELWWKAL 145 (521)
Q Consensus 110 ~~~AA~~iQk~Yr~yRtRR~Lad-----~av~~~~~Ww~al 145 (521)
...+|++||+.+|+|..||+..- .|+.+-+++|.+.
T Consensus 778 l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~ 818 (837)
T 1kk8_A 778 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKW 818 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999998764 3566667766653
No 12
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=50.21 E-value=17 Score=36.44 Aligned_cols=95 Identities=12% Similarity=0.165 Sum_probs=56.0
Q ss_pred hhhhhhccCcccccceEEEEecCeEEEeeCCc----EEeccC----CCeEEEEEc--CCCcEEEeeccCCcee-------
Q 009984 251 QRQCIKYLGPKEREEFEVVVESGKLVYRQTGM----FVNTNE----DSKWIFVLS--TSRALYVGQKKKGVFQ------- 313 (521)
Q Consensus 251 ~~q~IkYLspeERe~YeV~IedGrL~y~~sG~----~vdTt~----~~kWIFVmd--tsg~LYVG~KkkG~FQ------- 313 (521)
+-+.+-|++-.+-.-|-+-.++|+++|..... ++.+.. .+..+||.. .+|+||+-....|.-+
T Consensus 8 ~~~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~ 87 (339)
T 2be1_A 8 SLSDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ 87 (339)
T ss_dssp EEEEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred eeCCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence 34445566666666666666689999887654 332221 123577774 6999999765444221
Q ss_pred --ccc-CC-CCCcce-------eeeeEEE--ecceeEEecCCCCC
Q 009984 314 --HSS-FL-SGGAIT-------AAGRLVA--HDGILEAIWPYSGH 345 (521)
Q Consensus 314 --HSS-FL-aGg~V~-------AAG~I~V--knG~Lk~Isp~SGH 345 (521)
++| +. .|.+|+ .-|.+.+ .+|.|-+|...+|-
T Consensus 88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence 222 33 456666 6666655 57888888888774
No 13
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=47.57 E-value=9.1 Score=25.57 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.9
Q ss_pred HHHHHHHHhhhhhhhhh...
Q 009984 112 AAATKLQKVYKSYRTRR... 128 (521)
Q Consensus 112 ~AA~~iQk~Yr~yRtRR... 128 (521)
=|+..||..||.+|.|+
T Consensus 7 YA~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 7 YAAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHHhccC...
Confidence 48999999999999875
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=45.81 E-value=8.4 Score=44.39 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhhhhhhhcccC----cchhhHHHHHHHH
Q 009984 110 LDAAATKLQKVYKSYRTRRNLAD----CAVVVEELWWKAL 145 (521)
Q Consensus 110 ~~~AA~~iQk~Yr~yRtRR~Lad----~av~~~~~Ww~al 145 (521)
...||+.||+.||+|..|+.+.. .|++.-+.||...
T Consensus 790 ~r~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~ 829 (1080)
T 2dfs_A 790 MRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMY 829 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhH
Confidence 45788999999999988876542 2344445555543
No 15
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=45.56 E-value=64 Score=29.83 Aligned_cols=23 Identities=9% Similarity=0.297 Sum_probs=15.2
Q ss_pred ccccCCCCccccccCCCCceeec
Q 009984 436 VYDLSKRLSCKWTSGVGPRIGCV 458 (521)
Q Consensus 436 s~ql~~~ls~kWsTgaGpRIgcv 458 (521)
.|++...=.+.|+-...+++|-+
T Consensus 246 ~~~~~~~g~~~W~~~~~~~~~~~ 268 (276)
T 3no2_A 246 LVEIDSEGKVVWQLNDKVKFGMI 268 (276)
T ss_dssp EEEECTTSBEEEEECCTTTSCCC
T ss_pred EEEECCCCCEEEEecCcccccce
Confidence 45554444468888888888754
No 16
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=44.78 E-value=10 Score=25.96 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=16.1
Q ss_pred HHHHHHHhhhhhhhhhc
Q 009984 113 AATKLQKVYKSYRTRRN 129 (521)
Q Consensus 113 AA~~iQk~Yr~yRtRR~ 129 (521)
||..||..||.+..||.
T Consensus 4 Aa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 4 AAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 89999999999999987
No 17
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=43.92 E-value=35 Score=31.83 Aligned_cols=51 Identities=20% Similarity=0.211 Sum_probs=32.6
Q ss_pred CeEEEEEcCCCcEEEeeccCCceecccCC-----CCCcceeeeeEEEe--cceeEEec
Q 009984 290 SKWIFVLSTSRALYVGQKKKGVFQHSSFL-----SGGAITAAGRLVAH--DGILEAIW 340 (521)
Q Consensus 290 ~kWIFVmdtsg~LYVG~KkkG~FQHSSFL-----aGg~V~AAG~I~Vk--nG~Lk~Is 340 (521)
+..+||.+.+|.||+=..+.|.+....-+ ...++.+-|.|.|- +|.|..+.
T Consensus 318 ~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 318 NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 34689999999999887777776543323 23344555666663 56666553
No 18
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=41.62 E-value=20 Score=27.46 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhhhhhhhhcc
Q 009984 110 LDAAATKLQKVYKSYRTRRNL 130 (521)
Q Consensus 110 ~~~AA~~iQk~Yr~yRtRR~L 130 (521)
+..|+..||++.|+|=.+|+-
T Consensus 29 ~~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 29 KSVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhhccC
Confidence 355777888888888777643
No 19
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=39.23 E-value=24 Score=26.43 Aligned_cols=29 Identities=34% Similarity=0.518 Sum_probs=24.0
Q ss_pred hcCCCChHHHHHHH-HHHHHHHhcCCCcccc
Q 009984 180 VGKGLSKDENAQKL-ALQHWLEAIDPRHRYG 209 (521)
Q Consensus 180 vGkGlskd~kAqkL-~lQhwLEaIDprHRYG 209 (521)
-|.+.|.++-||=+ +|+|.+.+| -|+|||
T Consensus 12 Pg~~aspEela~Y~~~Lr~Yinlv-TR~RyG 41 (41)
T 2l60_A 12 ELKKLSPEELNRYYASLRHYLNLV-TRQRYX 41 (41)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHH-TTTCC-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHh-cccccC
Confidence 47888999988876 799999988 589998
No 20
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=37.43 E-value=25 Score=26.90 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhhhhhhhhc
Q 009984 111 DAAATKLQKVYKSYRTRRN 129 (521)
Q Consensus 111 ~~AA~~iQk~Yr~yRtRR~ 129 (521)
..|+..||++.|+|=.+|+
T Consensus 32 ~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 32 RIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 3455566666666655553
No 21
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=34.04 E-value=13 Score=27.33 Aligned_cols=28 Identities=32% Similarity=0.633 Sum_probs=22.0
Q ss_pred cCCCChHHHHHHH-HHHHHHHhcCCCcccc
Q 009984 181 GKGLSKDENAQKL-ALQHWLEAIDPRHRYG 209 (521)
Q Consensus 181 GkGlskd~kAqkL-~lQhwLEaIDprHRYG 209 (521)
|.+.+.++-||-+ +|+|.|.+| -|+|||
T Consensus 9 g~~a~pEela~Y~~~Lr~Yinlv-TRqRyG 37 (37)
T 1f8p_A 9 GEDAPAEDLARYYSALRHYINLI-TRQRYX 37 (37)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHH-HHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh-cccccC
Confidence 6677888888776 799999988 478887
No 22
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=32.00 E-value=26 Score=40.43 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhhhhhhhhccc
Q 009984 110 LDAAATKLQKVYKSYRTRRNLA 131 (521)
Q Consensus 110 ~~~AA~~iQk~Yr~yRtRR~La 131 (521)
...||+.||..+|+|..||++.
T Consensus 838 lr~aai~IQs~~Rg~laRr~~~ 859 (1080)
T 2dfs_A 838 MRDATIALQALLRGYLVRNKYQ 859 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777777777776654
No 23
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=31.96 E-value=18 Score=40.70 Aligned_cols=27 Identities=22% Similarity=0.548 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhhhhhhhhcccCcchhhHHHHHHHHH
Q 009984 111 DAAATKLQKVYKSYRTRRNLADCAVVVEELWWKALD 146 (521)
Q Consensus 111 ~~AA~~iQk~Yr~yRtRR~Lad~av~~~~~Ww~ald 146 (521)
..||++||+.+|+|..||+-. ||+.+-
T Consensus 805 r~a~~~IQ~~~R~~~~~r~~~---------w~~l~~ 831 (837)
T 1kk8_A 805 RIGLSVIQRNIRKWLVLRNWQ---------WWKLYS 831 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHTCH---------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcchH---------HHHHHh
Confidence 578999999999999998653 888763
No 24
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=25.82 E-value=27 Score=29.43 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=15.4
Q ss_pred HHHHHHHHHhhhhhhhhhc
Q 009984 111 DAAATKLQKVYKSYRTRRN 129 (521)
Q Consensus 111 ~~AA~~iQk~Yr~yRtRR~ 129 (521)
-=||..||..||.||.|++
T Consensus 63 iYA~llI~d~~r~~k~r~~ 81 (81)
T 3g43_E 63 FYATFLIQEYFRKFKKREQ 81 (81)
T ss_dssp HHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 3499999999999999875
No 25
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=24.91 E-value=72 Score=23.32 Aligned_cols=27 Identities=26% Similarity=0.492 Sum_probs=22.1
Q ss_pred cCCCChHHHHHHH-HHHHHHHhcCCCccc
Q 009984 181 GKGLSKDENAQKL-ALQHWLEAIDPRHRY 208 (521)
Q Consensus 181 GkGlskd~kAqkL-~lQhwLEaIDprHRY 208 (521)
|.+.+.++-||-. +|+|+|.+|- |+||
T Consensus 9 G~dA~~Eela~Y~~~LrhYiNlvT-RqRy 36 (36)
T 2bf9_A 9 GDDAPVEDLIRFYNDLQQYLNVVT-RHRX 36 (36)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHh-ccCC
Confidence 6778889988866 7999999984 6776
No 26
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=24.58 E-value=1.1e+02 Score=32.38 Aligned_cols=95 Identities=13% Similarity=0.143 Sum_probs=61.3
Q ss_pred hhhhhhccCcc-cccceEEEE-ecCeEEEeeCCcE-Ee--------------cc--CCC---eEEEEEcCCCcEEEeecc
Q 009984 251 QRQCIKYLGPK-EREEFEVVV-ESGKLVYRQTGMF-VN--------------TN--EDS---KWIFVLSTSRALYVGQKK 308 (521)
Q Consensus 251 ~~q~IkYLspe-ERe~YeV~I-edGrL~y~~sG~~-vd--------------Tt--~~~---kWIFVmdtsg~LYVG~Kk 308 (521)
....+.|+.-. ...-|-+-. ++|+++|+.+-.. .. +. .++ .-|||.+.++.||+=..+
T Consensus 60 v~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~ 139 (599)
T 1w6s_A 60 VVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE 139 (599)
T ss_dssp EETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred EECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECC
Confidence 34455676654 555666666 6899999875321 00 00 111 238998888999987766
Q ss_pred CCceecc---------cCCCCCcceeeeeEEEe--------cceeEEecCCCCC
Q 009984 309 KGVFQHS---------SFLSGGAITAAGRLVAH--------DGILEAIWPYSGH 345 (521)
Q Consensus 309 kG~FQHS---------SFLaGg~V~AAG~I~Vk--------nG~Lk~Isp~SGH 345 (521)
.|...-+ -...+.++++-|.|.|- +|.|.++...+|.
T Consensus 140 TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~ 193 (599)
T 1w6s_A 140 TGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGE 193 (599)
T ss_dssp TCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCC
T ss_pred CCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCc
Confidence 6665422 13445667777887774 5899999999996
No 27
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=24.51 E-value=1.1e+02 Score=32.57 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=58.7
Q ss_pred hhhhhhccCcccccceEEEEecCeEEEeeCCcEEec-----------c---CCCeEEEEEcCCCcEEEeeccCCceecc-
Q 009984 251 QRQCIKYLGPKEREEFEVVVESGKLVYRQTGMFVNT-----------N---EDSKWIFVLSTSRALYVGQKKKGVFQHS- 315 (521)
Q Consensus 251 ~~q~IkYLspeERe~YeV~IedGrL~y~~sG~~vdT-----------t---~~~kWIFVmdtsg~LYVG~KkkG~FQHS- 315 (521)
....+.|++-....-|-+-..+|+++|+.+...-.. . -.+.-|||-+.++.||+=..+.|...-+
T Consensus 68 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 68 VVDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp EETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 344556766543333333344899999875321100 0 0134588888889998876666654311
Q ss_pred ---------cCCCCCcceeeeeEEEe--------cceeEEecCCCCC
Q 009984 316 ---------SFLSGGAITAAGRLVAH--------DGILEAIWPYSGH 345 (521)
Q Consensus 316 ---------SFLaGg~V~AAG~I~Vk--------nG~Lk~Isp~SGH 345 (521)
....+.+++.-|.+.|- +|.|..+...+|-
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~ 194 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGK 194 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCc
Confidence 23445677777887774 5789999998886
No 28
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=24.34 E-value=34 Score=31.45 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhhhhhhhhcc
Q 009984 110 LDAAATKLQKVYKSYRTRRNL 130 (521)
Q Consensus 110 ~~~AA~~iQk~Yr~yRtRR~L 130 (521)
..+|+++||++-|+|-+||.-
T Consensus 44 R~~~~i~iQktvR~~L~rkkh 64 (148)
T 3gn4_A 44 RAEACIKMQKTIRMWLCKRRH 64 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 468999999999999998753
No 29
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=24.23 E-value=30 Score=38.74 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhhhhhhhhcc
Q 009984 110 LDAAATKLQKVYKSYRTRRNL 130 (521)
Q Consensus 110 ~~~AA~~iQk~Yr~yRtRR~L 130 (521)
...+|++||+++|+|..||+.
T Consensus 767 l~~~~~~iQ~~~Rg~l~R~~~ 787 (795)
T 1w7j_A 767 LRAACIRIQKTIRGWLMRKKY 787 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999764
No 30
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=23.76 E-value=3.1e+02 Score=22.63 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=28.9
Q ss_pred cceEEEEe-cCeEE-Eee-CCcEEeccC----CCeEEEEEcCCCcEEEeec
Q 009984 264 EEFEVVVE-SGKLV-YRQ-TGMFVNTNE----DSKWIFVLSTSRALYVGQK 307 (521)
Q Consensus 264 e~YeV~Ie-dGrL~-y~~-sG~~vdTt~----~~kWIFVmdtsg~LYVG~K 307 (521)
-.|.+.+. ||.|+ |.. .+..+-.+. +.....+|..+|+|++-..
T Consensus 24 g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d~ 74 (113)
T 3mez_B 24 RDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITDD 74 (113)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEECT
T ss_pred CCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEECC
Confidence 36788874 78886 554 356665432 1235678899999998643
No 31
>3sao_A Extracellular fatty acid-binding protein; beta-barrel, siderophore binding protein, transport protein; HET: NKN DBH; 1.80A {Gallus gallus} SCOP: b.60.1.1 PDB: 1jzu_A 2kt4_B* 2lbv_A*
Probab=23.09 E-value=1.6e+02 Score=25.08 Aligned_cols=39 Identities=13% Similarity=0.004 Sum_probs=29.6
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHcCCCCCCceeccccCC
Q 009984 340 WPYSGHYLPTEENFKEFVSFLEEHSVDLTNVKRCAIDED 378 (521)
Q Consensus 340 sp~SGHYRPt~enf~~Fl~~L~e~GVDLs~Vk~~~~d~d 378 (521)
|=+|-.=.++.+-+..|.+++++.|++.+++...+-.+.
T Consensus 112 ~llsR~~~~~~e~~~~f~~~~~~~G~~~~~i~~~~~~~~ 150 (160)
T 3sao_A 112 RLYSRSREVSPTAMAIFRKLARERNYTDEMVAVLPSQAA 150 (160)
T ss_dssp EEEESSSSCCHHHHHHHHHHHHTTTCCGGGEEECCCCSS
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCHHHEEECCCCCc
Confidence 334444457889999999999999999999876554333
No 32
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=22.84 E-value=3e+02 Score=22.70 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=27.3
Q ss_pred cceEEEEe-cCeEE-EeeCCcEEecc--CC-CeEEEEEcCCCcEEEeec
Q 009984 264 EEFEVVVE-SGKLV-YRQTGMFVNTN--ED-SKWIFVLSTSRALYVGQK 307 (521)
Q Consensus 264 e~YeV~Ie-dGrL~-y~~sG~~vdTt--~~-~kWIFVmdtsg~LYVG~K 307 (521)
-.|.+.+. ||.|+ |..++ .-.|. .. .....+|..+|+|++-..
T Consensus 20 g~~~L~~q~dGnLvl~~~~~-vW~snt~~~~~~~~l~l~~dGNLVl~~~ 67 (111)
T 3mez_A 20 ESAAFVMQGDCNLVLYNEAG-GFQSNTHGRGVDCTLRLNNRGQLEIHSA 67 (111)
T ss_dssp TTEEEEECTTSCEEEECSSC-CEECCCTTSCSSCEEEECTTSCEEEECS
T ss_pred CCEEEEEccCCeEEEECCCC-EEECCcccCCcCEEEEEcCCCcEEEEeC
Confidence 46788874 78876 55555 33222 11 225778899999998754
No 33
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=22.34 E-value=1.6e+02 Score=28.93 Aligned_cols=83 Identities=13% Similarity=0.098 Sum_probs=44.4
Q ss_pred ccceEEEEecCeEE-Eee-CCcEEeccC----------CCeEEEEEcCCCcEEEeeccCCceecccCC--CCCcce----
Q 009984 263 REEFEVVVESGKLV-YRQ-TGMFVNTNE----------DSKWIFVLSTSRALYVGQKKKGVFQHSSFL--SGGAIT---- 324 (521)
Q Consensus 263 Re~YeV~IedGrL~-y~~-sG~~vdTt~----------~~kWIFVmdtsg~LYVG~KkkG~FQHSSFL--aGg~V~---- 324 (521)
..-|.+...++++. |+. +++++.|.. +++++||.|.+++|++=.-+.++...+=-+ .|.++.
T Consensus 106 ~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNe 185 (268)
T 3nok_A 106 ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINE 185 (268)
T ss_dssp SCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred CEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccc
Confidence 34455544455553 553 455554432 467888888888888764444443332111 233332
Q ss_pred ---eeeeEEEe---cceeEEecCCCCC
Q 009984 325 ---AAGRLVAH---DGILEAIWPYSGH 345 (521)
Q Consensus 325 ---AAG~I~Vk---nG~Lk~Isp~SGH 345 (521)
+.|+|-|. ...|..|.|.+|-
T Consensus 186 Le~~dG~lyanvw~s~~I~vIDp~TG~ 212 (268)
T 3nok_A 186 LECANGVIYANIWHSSDVLEIDPATGT 212 (268)
T ss_dssp EEEETTEEEEEETTCSEEEEECTTTCB
T ss_pred cEEeCCEEEEEECCCCeEEEEeCCCCc
Confidence 34666553 3566677776664
No 34
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=21.55 E-value=3.4e+02 Score=22.23 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=28.8
Q ss_pred ceEEEEe-cCeEEEeeCCcEEeccC-----CCeEEEEEcCCCcEEEeec
Q 009984 265 EFEVVVE-SGKLVYRQTGMFVNTNE-----DSKWIFVLSTSRALYVGQK 307 (521)
Q Consensus 265 ~YeV~Ie-dGrL~y~~sG~~vdTt~-----~~kWIFVmdtsg~LYVG~K 307 (521)
.|.+++. ||.|+.-..+.++-.+. ....-++|..+|+|.+-..
T Consensus 20 ~y~l~~q~DgNLvly~~~~~vW~ant~~~~~~~~~L~l~~dGnLvL~d~ 68 (105)
T 4h3o_A 20 PYHFIMQDDCNLVLYDHSTSTWASNTEIGGKSGCSAVLQSDGNFVVYDS 68 (105)
T ss_dssp TEEEEECTTSCEEEEETTEEEEECCCCCTTCCSCEEEECTTSCEEEECT
T ss_pred CEEEEECCCCeEEEEECCEEEEEecCCCCCCccEEEEEeCCccEEEECC
Confidence 4888884 88887555666664332 1234678899999988644
No 35
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=21.31 E-value=1.4e+02 Score=31.74 Aligned_cols=95 Identities=13% Similarity=0.095 Sum_probs=57.8
Q ss_pred hhhhhhccCcccccceEEEEecCeEEEeeCCcEE-e--------cc-C----CCeEEEEEcCCCcEEEeeccCCceec--
Q 009984 251 QRQCIKYLGPKEREEFEVVVESGKLVYRQTGMFV-N--------TN-E----DSKWIFVLSTSRALYVGQKKKGVFQH-- 314 (521)
Q Consensus 251 ~~q~IkYLspeERe~YeV~IedGrL~y~~sG~~v-d--------Tt-~----~~kWIFVmdtsg~LYVG~KkkG~FQH-- 314 (521)
....+.|+.-....-|-+-.++|+++|..+...- . .. . .+.-|||.+.+++||+=..+.|...-
T Consensus 75 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 75 VVDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp EETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 3455567665444334444458999998753210 0 00 0 23468888888888887655554321
Q ss_pred --------ccCCCCCcceeeeeEEEe--------cceeEEecCCCCC
Q 009984 315 --------SSFLSGGAITAAGRLVAH--------DGILEAIWPYSGH 345 (521)
Q Consensus 315 --------SSFLaGg~V~AAG~I~Vk--------nG~Lk~Isp~SGH 345 (521)
.....+.+++.-|.+.|- +|.|..+...+|.
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~ 201 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGE 201 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred cCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCc
Confidence 123445666667777763 5889999988886
No 36
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=21.23 E-value=78 Score=23.13 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=21.9
Q ss_pred cCCCChHHHHHHH-HHHHHHHhcCCCccc
Q 009984 181 GKGLSKDENAQKL-ALQHWLEAIDPRHRY 208 (521)
Q Consensus 181 GkGlskd~kAqkL-~lQhwLEaIDprHRY 208 (521)
|.+.+.++-||-. +|+|+|.+|- |+||
T Consensus 9 G~dA~pEela~Y~~~Lr~YiNlvT-RqRy 36 (36)
T 1bba_A 9 GDNATPEQMAQYAAELRRYINMLT-RPRY 36 (36)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHHHC-CCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh-cccC
Confidence 6778888888865 7999999984 6776
No 37
>1qbf_A Peptide YY, PYY; PP-fold, pancreatic hormone, , inhibitor/hormone complex; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ru5_A 1ruu_A 2rlk_A 2oop_A 2dez_A 2df0_A
Probab=21.17 E-value=13 Score=27.36 Aligned_cols=28 Identities=32% Similarity=0.635 Sum_probs=19.4
Q ss_pred cCCCChHHHHHHH-HHHHHHHhcCCCcccc
Q 009984 181 GKGLSKDENAQKL-ALQHWLEAIDPRHRYG 209 (521)
Q Consensus 181 GkGlskd~kAqkL-~lQhwLEaIDprHRYG 209 (521)
|.+.+.++-||-+ +|+|.|.+| -|+|||
T Consensus 9 g~da~pEela~Y~~~Lr~Yinlv-TR~RyG 37 (37)
T 1qbf_A 9 GEDASPEELSRYYASLRHYLNLV-TRQRYX 37 (37)
T ss_dssp CCSSSSSTTTTTTTGGGHHHHHT-SSSCC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh-cccccC
Confidence 4555666666654 688999888 588987
No 38
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=20.63 E-value=2.4e+02 Score=29.29 Aligned_cols=95 Identities=14% Similarity=0.176 Sum_probs=59.3
Q ss_pred hhhhhhccCcc-cccceEEEE-ecCeEEEeeCCcEE------------ecc--CCCeEEEEEcCCCcEEEeeccCCceec
Q 009984 251 QRQCIKYLGPK-EREEFEVVV-ESGKLVYRQTGMFV------------NTN--EDSKWIFVLSTSRALYVGQKKKGVFQH 314 (521)
Q Consensus 251 ~~q~IkYLspe-ERe~YeV~I-edGrL~y~~sG~~v------------dTt--~~~kWIFVmdtsg~LYVG~KkkG~FQH 314 (521)
....+.|+.-. ...-|-+-. ++|+++|..+-..- ... -.+.-+||.+.++.||+=..+.|...-
T Consensus 60 v~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 60 VIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 34555677655 555666666 78999998752210 000 013458888888888887655554432
Q ss_pred cc---------CCCCCcceeeeeEEEe--------cceeEEecCCCCC
Q 009984 315 SS---------FLSGGAITAAGRLVAH--------DGILEAIWPYSGH 345 (521)
Q Consensus 315 SS---------FLaGg~V~AAG~I~Vk--------nG~Lk~Isp~SGH 345 (521)
+. -..+.+++.-|.+.|- +|.|..+...+|.
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred EecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCc
Confidence 11 2344556666777664 5799999999986
No 39
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=20.51 E-value=1.8e+02 Score=23.24 Aligned_cols=45 Identities=22% Similarity=0.365 Sum_probs=27.4
Q ss_pred CCCCccCCCCCChhhhhhhhh----------hccCcccccc-----eEEEEecCeEEEee
Q 009984 235 GDGKEVNLEKCPRNVLQRQCI----------KYLGPKEREE-----FEVVVESGKLVYRQ 279 (521)
Q Consensus 235 GeGk~v~le~CpR~kL~~q~I----------kYLspeERe~-----YeV~IedGrL~y~~ 279 (521)
|-|..++++.++|+..+.+.+ .-|++++.+. ....+..|.+++..
T Consensus 1 ~~~~~~~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~ 60 (139)
T 3ocp_A 1 GSGSHVTLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKE 60 (139)
T ss_dssp ---CCCCCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECT
T ss_pred CCCCcccCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeC
Confidence 567889999999988776654 3456665552 23445566666654
No 40
>3kff_A MUP 4, major urinary protein 4; pheromone, lipocalin, beta barrel, DI bond, pheromone-binding, secreted, transport, transport Pro; 0.96A {Mus musculus} SCOP: b.60.1.1 PDB: 3kfg_A 3kfh_A 3kfi_A 2l9c_A 2lb6_A 1i06_A 1i05_A* 1i04_A 1mup_A 1znd_A 1qy0_A* 1qy2_A* 1qy1_A 1zne_A 1zng_A 1znh_A 1znk_A* 1znl_A* 2dm5_A* 2ozq_A ...
Probab=20.33 E-value=3.3e+02 Score=23.23 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=28.7
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHcCCCCCCceeccccC
Q 009984 340 WPYSGHYLPTEENFKEFVSFLEEHSVDLTNVKRCAIDE 377 (521)
Q Consensus 340 sp~SGHYRPt~enf~~Fl~~L~e~GVDLs~Vk~~~~d~ 377 (521)
|=+|--=.++.+-+..|.+++++.|++.+++...+-.+
T Consensus 118 ~ll~R~~~~~~~~~~~f~~~~~~~G~~~~~i~~~~~~~ 155 (162)
T 3kff_A 118 ELYGRKADLNSDIKEKFVKLCEEHGIIKENIIDLTKTN 155 (162)
T ss_dssp EEEESSSCCCHHHHHHHHHHHHHTTCCGGGEEEGGGSC
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHcCCCHHHEEECCCCC
Confidence 33444445678999999999999999999987655433
No 41
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=20.07 E-value=43 Score=32.25 Aligned_cols=76 Identities=13% Similarity=0.076 Sum_probs=31.6
Q ss_pred ecCeEEEeeCCcEEecc---CCCeEEEEEcCCCcEEEeeccCCce------ecccCCCCCcce-eeeeEEE--ecceeEE
Q 009984 271 ESGKLVYRQTGMFVNTN---EDSKWIFVLSTSRALYVGQKKKGVF------QHSSFLSGGAIT-AAGRLVA--HDGILEA 338 (521)
Q Consensus 271 edGrL~y~~sG~~vdTt---~~~kWIFVmdtsg~LYVG~KkkG~F------QHSSFLaGg~V~-AAG~I~V--knG~Lk~ 338 (521)
.+|+++|......+... .+++.+++-+.+|.||+=..+.|.. +........++. .-|.|.+ .||.|..
T Consensus 27 ~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a 106 (369)
T 2hz6_A 27 RTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYV 106 (369)
T ss_dssp TTCCEEEEEECCCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEE
T ss_pred CCCCEEEEecCCCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEE
Confidence 47888887654222211 1333344446788888864433322 211111222332 2222222 5788888
Q ss_pred ecCCCCCC
Q 009984 339 IWPYSGHY 346 (521)
Q Consensus 339 Isp~SGHY 346 (521)
+.+.+|--
T Consensus 107 ~D~~tG~~ 114 (369)
T 2hz6_A 107 IDLLTGEK 114 (369)
T ss_dssp ECCC----
T ss_pred EECCCCcE
Confidence 88887753
Done!