Query 009985
Match_columns 521
No_of_seqs 185 out of 582
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 19:40:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009985.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009985hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2864 Nuclear division RFT1 100.0 3.8E-76 8.3E-81 586.1 53.7 496 6-513 4-516 (530)
2 PF04506 Rft-1: Rft protein; 100.0 3.9E-74 8.5E-79 613.7 50.2 497 11-517 2-543 (549)
3 PRK10459 colanic acid exporter 100.0 5.4E-43 1.2E-47 377.0 48.3 479 7-517 2-482 (492)
4 TIGR01695 mviN integral membra 100.0 8.8E-30 1.9E-34 274.8 48.6 481 11-511 1-501 (502)
5 TIGR02900 spore_V_B stage V sp 100.0 5E-29 1.1E-33 267.9 47.5 469 13-497 2-487 (488)
6 COG2244 RfbX Membrane protein 100.0 1.2E-27 2.7E-32 256.7 45.7 390 7-422 3-394 (480)
7 PRK15099 O-antigen translocase 100.0 2E-26 4.3E-31 243.1 44.4 408 12-441 3-413 (416)
8 PF01943 Polysacc_synt: Polysa 99.9 1.6E-19 3.5E-24 178.0 31.2 271 13-301 2-273 (273)
9 PF03023 MVIN: MviN-like prote 99.8 2.2E-14 4.8E-19 152.8 45.8 303 127-442 99-405 (451)
10 PF13440 Polysacc_synt_3: Poly 99.8 2.2E-16 4.7E-21 154.1 27.8 248 28-299 2-250 (251)
11 COG0728 MviN Uncharacterized m 99.7 1.8E-10 4E-15 122.2 54.3 413 7-441 4-438 (518)
12 TIGR00797 matE putative efflux 99.6 1.4E-12 3E-17 133.6 33.7 317 20-346 3-325 (342)
13 PRK09575 vmrA multidrug efflux 99.6 6E-11 1.3E-15 126.8 44.7 419 5-441 7-437 (453)
14 PRK01766 multidrug efflux prot 99.6 3.1E-11 6.6E-16 129.1 41.1 414 11-440 13-442 (456)
15 PRK00187 multidrug efflux prot 99.5 5.6E-10 1.2E-14 119.6 44.6 406 8-433 8-437 (464)
16 COG0534 NorM Na+-driven multid 99.5 3.2E-09 7E-14 113.3 43.4 412 8-440 15-443 (455)
17 PRK10367 DNA-damage-inducible 99.4 8.2E-08 1.8E-12 102.3 45.0 412 9-441 8-432 (441)
18 PRK10189 MATE family multidrug 99.3 2.2E-07 4.8E-12 100.0 44.9 404 11-434 30-456 (478)
19 PRK01766 multidrug efflux prot 99.0 3.4E-08 7.4E-13 105.6 20.9 200 231-438 11-216 (456)
20 PRK09575 vmrA multidrug efflux 98.9 1.3E-07 2.8E-12 101.2 22.0 202 230-438 10-213 (453)
21 PRK10367 DNA-damage-inducible 98.9 3E-07 6.6E-12 97.9 22.5 200 231-438 8-210 (441)
22 COG0534 NorM Na+-driven multid 98.9 2.8E-07 6.1E-12 98.4 21.8 202 230-439 15-220 (455)
23 TIGR00797 matE putative efflux 98.8 2.8E-07 6.1E-12 94.3 20.3 191 240-439 1-196 (342)
24 PRK10189 MATE family multidrug 98.8 6.2E-07 1.3E-11 96.5 20.8 198 230-436 27-233 (478)
25 PRK00187 multidrug efflux prot 98.6 3E-06 6.4E-11 91.0 21.0 189 231-429 9-204 (464)
26 TIGR01695 mviN integral membra 98.5 0.00012 2.5E-09 79.2 29.0 197 234-439 2-206 (502)
27 TIGR02900 spore_V_B stage V sp 98.4 3E-05 6.5E-10 83.4 21.6 192 236-434 3-198 (488)
28 PF14667 Polysacc_synt_C: Poly 98.4 1E-05 2.3E-10 72.1 15.1 141 358-502 1-144 (146)
29 PRK15099 O-antigen translocase 97.9 0.00099 2.2E-08 70.3 20.5 191 235-437 4-194 (416)
30 PF03023 MVIN: MviN-like prote 97.9 0.0074 1.6E-07 64.6 26.5 172 261-440 3-182 (451)
31 PF01554 MatE: MatE; InterPro 97.7 1.7E-05 3.7E-10 71.8 2.8 145 240-389 1-145 (162)
32 PF01943 Polysacc_synt: Polysa 97.6 0.013 2.8E-07 57.1 21.2 188 236-441 3-192 (273)
33 PF13440 Polysacc_synt_3: Poly 97.4 0.026 5.7E-07 54.5 19.8 166 255-439 7-172 (251)
34 COG0728 MviN Uncharacterized m 97.2 0.37 8.1E-06 52.0 28.1 202 232-439 7-215 (518)
35 PRK10459 colanic acid exporter 97.2 0.036 7.9E-07 59.8 20.4 181 232-432 5-186 (492)
36 COG2244 RfbX Membrane protein 95.6 1.1 2.5E-05 47.9 19.7 68 232-299 6-73 (480)
37 KOG1347 Uncharacterized membra 94.1 1.4 3E-05 47.4 15.2 189 232-428 28-218 (473)
38 PF07260 ANKH: Progressive ank 94.1 7.3 0.00016 39.2 22.8 163 127-300 130-306 (345)
39 PF01554 MatE: MatE; InterPro 90.6 0.54 1.2E-05 42.0 5.7 140 20-165 3-151 (162)
40 PF14667 Polysacc_synt_C: Poly 57.3 1.3E+02 0.0027 25.9 16.0 70 129-202 2-71 (146)
41 PF06123 CreD: Inner membrane 52.1 3.2E+02 0.0069 29.1 14.1 61 4-64 286-346 (430)
42 COG4452 CreD Inner membrane pr 37.0 4.4E+02 0.0096 27.4 11.1 61 4-65 286-347 (443)
43 PRK11715 inner membrane protei 34.4 6E+02 0.013 27.1 13.5 61 4-64 292-352 (436)
44 PF11364 DUF3165: Protein of u 27.0 2.3E+02 0.0049 22.5 5.6 45 4-51 18-62 (81)
45 COG1455 CelB Phosphotransferas 24.9 3.6E+02 0.0078 28.7 8.5 39 289-330 8-46 (432)
46 COG5594 Uncharacterized integr 22.7 1.2E+03 0.026 26.9 14.5 54 401-459 551-615 (827)
47 PRK09458 pspB phage shock prot 21.2 95 0.0021 24.3 2.6 31 324-354 4-34 (75)
No 1
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.8e-76 Score=586.07 Aligned_cols=496 Identities=39% Similarity=0.602 Sum_probs=430.1
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccch
Q 009985 6 VDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASRE 85 (521)
Q Consensus 6 ~~~~~~~~~~~~w~~~~q~~~r~i~Fi~~~iLaRlLsP~~fGlva~~l~~~~~~~~~l~~~g~~~Alir~~~~~~~~~~~ 85 (521)
+++-.+..+|+..++.+|+..|++||++|.++.|.++||.+|++++.++++++|++|++||.+|.|.+|..+..+|
T Consensus 4 ~~vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~~d---- 79 (530)
T KOG2864|consen 4 DSVLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEPAD---- 79 (530)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCc----
Confidence 4566778899999999999999999999999999999999999999999999999999999999999999877654
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----CCCchhHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHH
Q 009985 86 ENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLS----YSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVV 161 (521)
Q Consensus 86 ~~~~~~~n~~~~~i~~g~~~~~~~~~~~~~~~~~~----~~~~y~~~~~v~~l~~ii~~l~~p~~~~~q~~l~f~~~~~~ 161 (521)
++.+..|.-|++.|++.+..+..++++++|.... ..++|...+.++++++++|.++||.+...|..++++.++..
T Consensus 80 -~~te~~n~~wlS~~L~~~i~~~~i~~wl~~~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~ 158 (530)
T KOG2864|consen 80 -TWTEFINLLWLSVPLQTAINVACIYFWLGFLSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIA 158 (530)
T ss_pred -cHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 6778889999999999999988887766654321 45678899999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH-HHHHHHHhc-------ccccCCccccccCC--ccccc
Q 009985 162 ETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLG-YWGYFLLFG-------AFKTSDLFPFRLGN--MMSYD 231 (521)
Q Consensus 162 ~~~a~~~~~~~~i~l~~~~~~~~~v~a~~~~ql~~~~~~~i~-~~~~~~~~~-------~~~~~~~~p~~~~~--~~~~~ 231 (521)
|+.+++++|++..+..+..++.+++.+|+++|++++.+.+++ +|.|+..++ ..|.++.+|+..++ .+.+|
T Consensus 159 e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd 238 (530)
T KOG2864|consen 159 EGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFD 238 (530)
T ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccccc
Confidence 999999999988777677778799999999999999998874 577776654 12334566776544 45689
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--hcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhh
Q 009985 232 KQLANMCTLFTFQSFRKLLLQEGEKLVLVW--LDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS 309 (521)
Q Consensus 232 k~l~~f~~~l~~~si~~~llt~~d~liig~--~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~ 309 (521)
++..+..++++.|+++||++|||||++++. ..+..|||+|+.++|+||+++|.+|+||||+++-+|++..+++++||.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 999999999999999999999999999995 456779999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHH
Q 009985 310 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK 389 (521)
Q Consensus 310 ~~l~~~~~~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~kw~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~ 389 (521)
++..+++.+.+|++.++|+.+++||++||++++.+++|+||++++.|..+|+||.|+|++++||++|||.+|+++++++.
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 88899999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCChhH-HHHHHHHHHH
Q 009985 390 RSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWP-ILLVSGVITL 468 (521)
Q Consensus 390 ~~~~~~~~~s~i~i~~~~~l~~~~G~~G~i~a~~i~~~~ri~~~~~~i~~~~~~~~~~~l~~~~p~~~~-~~~~~~~~~~ 468 (521)
|+|+.|.++++++++.+++++.++|..|+++||++||.+||.||+++|++++++.. ..-...+|.... +...++...
T Consensus 399 ~~n~~mlafSviflilsylL~~~~~~~GlIlANiiNm~lRIlys~~fI~~~yr~~~-ld~~~~l~~~~~~~~~~~~~s~- 476 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIRWFGLVGLILANIINMSLRILYSLRFIRHYYRDLS-LDRSLFLPFGPTLSIIFAGSSL- 476 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CChhhccCcchhHHHHHHhcch-
Confidence 99999999999999999999999999999999999999999999999999996621 111222332211 111111110
Q ss_pred hhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 009985 469 FSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKI 513 (521)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~ 513 (521)
+. ...........|+.+|++|.+..+......|+++.+..
T Consensus 477 ----l~-~~~~~~s~l~~hi~igvvc~la~l~~~al~~~~~~~~~ 516 (530)
T KOG2864|consen 477 ----LC-CTTWWLSYLAAHIAIGVVCLLATLGSTALILVVFIVIL 516 (530)
T ss_pred ----hh-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11233455677999999999999999999999888744
No 2
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=100.00 E-value=3.9e-74 Score=613.66 Aligned_cols=497 Identities=39% Similarity=0.636 Sum_probs=395.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhHHH
Q 009985 11 SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAK 90 (521)
Q Consensus 11 ~~~~~~~w~~~~q~~~r~i~Fi~~~iLaRlLsP~~fGlva~~l~~~~~~~~~l~~~g~~~Alir~~~~~~~~~~~~~~~~ 90 (521)
+..+|+.++++.|+++|++||++|+++.|.++||.+|+.+++++++++|++|++|||+|+|++|+++++.++ .|+++
T Consensus 2 ss~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~---~~~~~ 78 (549)
T PF04506_consen 2 SSAKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDK---SNWAQ 78 (549)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCc---ccHHH
Confidence 457899999999999999999999999999999999999999999999999999999999999998876221 14455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------Hhhhc-----cCCCc-hhHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 009985 91 LLKVAWLTLPLGIFITIGACFFVL------------WWQGL-----SYSNP-YAQAIFINGFACVLELLAEPLYILSQNL 152 (521)
Q Consensus 91 ~~n~~~~~i~~g~~~~~~~~~~~~------------~~~~~-----~~~~~-y~~~~~v~~l~~ii~~l~~p~~~~~q~~ 152 (521)
..|..|.+.+++.++.+...++.. .+... ....| |.+.+.++++++++|+++||.+++.|.+
T Consensus 79 ~~n~~wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~ 158 (549)
T PF04506_consen 79 SINLLWLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQM 158 (549)
T ss_pred hhhcccccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 556666555544443332111111 11110 11234 4678899999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHhHHHHHHHHhhc--cc-----------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCc
Q 009985 153 LLLRLRLVVETVATFSRCFTMCILIVKQ--YE-----------MEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDL 219 (521)
Q Consensus 153 l~f~~~~~~~~~a~~~~~~~~i~l~~~~--~~-----------~~~v~a~~~~ql~~~~~~~i~~~~~~~~~~~~~~~~~ 219 (521)
++++.|+++|+.+.++||++++++++.. .+ ..++++++.+|+.+++..+.+|....... ..+.+..
T Consensus 159 l~~~~Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~-~~~~s~~ 237 (549)
T PF04506_consen 159 LFFKLRVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFP-FKSFSDL 237 (549)
T ss_pred hhhheeeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCc-ccchhhc
Confidence 9999999999999999999998765332 11 13579999999999988877664322110 0111233
Q ss_pred cccccC---CcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--hcCCccchhHHHHHhhhhHHHHHHHhhhhHhhH
Q 009985 220 FPFRLG---NMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVW--LDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSY 294 (521)
Q Consensus 220 ~p~~~~---~~~~~~k~l~~f~~~l~~~si~~~llt~~d~liig~--~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~ 294 (521)
+|+... ....+|+++++....++.|+++||++|||||+++.. +.|.+|||+|++++|+||+++|++|+||||++|
T Consensus 238 lp~i~~~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~ 317 (549)
T PF04506_consen 238 LPKISSGNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSR 317 (549)
T ss_pred cccccccccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHH
Confidence 443322 245689999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCchhh------HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCCCCCchhHHHHHHHHHHHH
Q 009985 295 ATFARSASGQYPQKS------KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVV 368 (521)
Q Consensus 295 p~fs~~~~~~~~~~~------~~l~~~~~~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~kw~~~~~~~il~~~~~~~~~ 368 (521)
.+|||..+++++++. ++..+.+..++|+..++|+.+++|||++++.++++++|+||+++++|.++++||+|+|+
T Consensus 318 ~~Fsk~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~ 397 (549)
T PF04506_consen 318 LYFSKLLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPF 397 (549)
T ss_pred HHHHHHhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHH
Confidence 999999876544332 45667899999999999999999999999999999999999999889999999999999
Q ss_pred HHhhhhHHHHHHHhCCHHHHHHhhhHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-
Q 009985 369 LAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQ-SAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSS- 446 (521)
Q Consensus 369 ~~~ng~~eaf~~a~~~~~~l~~~~~~~~~~s~i~i~~~~~l~~-~~G~~G~i~a~~i~~~~ri~~~~~~i~~~~~~~~~- 446 (521)
+++||++|||++|+++++++.+++++|.+++++++..++.+++ .+|..|+++||++||.+||.||++||++||++...
T Consensus 398 la~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~~~~~~~ 477 (549)
T PF04506_consen 398 LAINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRWGLGAVGLILANCINMSLRIIYSLRFIRRYFRNSGPS 477 (549)
T ss_pred HHHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 9999999999999999999999999999999999999999998 49999999999999999999999999999987322
Q ss_pred cccc-ccCCChhHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 009985 447 FSFR-SSLPSGWPILLVSGVITLFSERIFLDRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIYKIIRFR 517 (521)
Q Consensus 447 ~~l~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~ 517 (521)
.... ...|.. ..+..+...+..++ ...++.+.+..+..|+.+|++|++. +..+||+.++..+++.
T Consensus 478 ~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~l~~----i~~~er~~~~~~~~~~ 543 (549)
T PF04506_consen 478 FSLFLPLRPSK-IVLIAAISSAIVTY-WFFGCTSFLSQFLIHIAVGVVCLLL----ILLEERQLLKLFIKKV 543 (549)
T ss_pred ccccchhccHH-HHHHHHHHHHHHhh-eeccccchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 1222 223322 22222223333333 3333455777889999999988765 3446676666665544
No 3
>PRK10459 colanic acid exporter; Provisional
Probab=100.00 E-value=5.4e-43 Score=377.02 Aligned_cols=479 Identities=14% Similarity=0.126 Sum_probs=367.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchh
Q 009985 7 DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREE 86 (521)
Q Consensus 7 ~~~~~~~~~~~w~~~~q~~~r~i~Fi~~~iLaRlLsP~~fGlva~~l~~~~~~~~~l~~~g~~~Alir~~~~~~~~~~~~ 86 (521)
++.++..||+.|+.++++.+++++|+.+++++|+|+|||||++++.. .+......+.+.|+.++++|+++++++
T Consensus 2 ~~~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~-~~~~~~~~~~~~Gl~~aii~~~~~~~~----- 75 (492)
T PRK10459 2 SLREKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSL-VIIGFADTLSDMGIGASIIQRQDISHL----- 75 (492)
T ss_pred ChHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHH-HHHHHHHHHHHcCHHHHHHhcccCCHH-----
Confidence 46788999999999999999999999999999999999999999954 455566778999999999987554322
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCc-hhHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHH
Q 009985 87 NAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNP-YAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVA 165 (521)
Q Consensus 87 ~~~~~~n~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~-y~~~~~v~~l~~ii~~l~~p~~~~~q~~l~f~~~~~~~~~a 165 (521)
+.++ .+|+++..|+.++++..... +..+..++++ ....+++.++...+..+.+.....+||+++||..+..|..+
T Consensus 76 ~~~~---~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~~ 151 (492)
T PRK10459 76 QLST---LYWLNVGLGIVVFVLVFLLS-PLIADFYHNPELAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISA 151 (492)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHcCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 3344 47777777776655544332 2222223444 34677888888888899998899999999999999999988
Q ss_pred HHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccccCCcccccHHHHHHHHHHHHHH
Q 009985 166 TFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQS 245 (521)
Q Consensus 166 ~~~~~~~~i~l~~~~~~~~~v~a~~~~ql~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~l~~f~~~l~~~s 245 (521)
.+...++++.++ +.+ +++|++++++++.+.+..+.++... +++++|+..+++ ...|++++++.|++.++
T Consensus 152 ~i~~~~~~i~~~--~~~-~g~~~l~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~------~~~k~ll~~~~~~~~~~ 220 (492)
T PRK10459 152 VVAGFTFAVVSA--FFW-PGALAAILGYLVNSSVRTLLFGYFG--RKIYRPALHFSL------ASVKPNLSFGAWQTAER 220 (492)
T ss_pred HHHHHHHHHHHH--HHC-CcHHHHHHHHHHHHHHHHHHHHHHh--cccCCccceecH------HHHHHHHhhhHHHHHHH
Confidence 888777766644 344 6789999999988876654443221 112234322221 23599999999999999
Q ss_pred HHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHH
Q 009985 246 FRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLL 325 (521)
Q Consensus 246 i~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~~~l~~~~~ 325 (521)
+..+++++.|++++|++.+++++|+|+.|+++.+++...+..++.++.+|.+|+.+ +|.+++++.+++.++....
T Consensus 221 ~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~~-----~~~~~~~~~~~~~~~~~~~ 295 (492)
T PRK10459 221 IINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQ-----DDTEKLRVGFLKLLSVLGI 295 (492)
T ss_pred HHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhc-----CCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888889999999999975 2446778889999999999
Q ss_pred HHHHHHHhcccchHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHhhhHHHHHHHHHHHH
Q 009985 326 IGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVM 405 (521)
Q Consensus 326 l~~~~~~~~~~~a~~li~ll~g~kw~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~~~~~~~~~~s~i~i~~ 405 (521)
+++|+.++....+|+++.+++||+|.++ .| ++++++.+..+..+++..+..+.+.|+++...+.+. +...+.+..
T Consensus 296 ~~~p~~~~l~~~a~~ii~ll~g~~~~~a-~~-~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~---~~~~~~i~~ 370 (492)
T PRK10459 296 INFPLLLGLMVVSNNFVPLVFGEKWNSA-IP-ILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNV---FKTFLFIPA 370 (492)
T ss_pred HHHHHHHHHHHHhHHHHHHhcChhHHhH-HH-HHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHH---HHHHHHHHH
Confidence 9999999999999999999999999997 55 999999988888888888888999999988765543 333444455
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCcccccccCCChhHHHHHHHHHHHhhhhhhhccchhhHHH
Q 009985 406 NVILIQSAGSVGLILANSLNMILRIIYSAIFI-KHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFLDRQDFWATF 484 (521)
Q Consensus 406 ~~~l~~~~G~~G~i~a~~i~~~~ri~~~~~~i-~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (521)
.+.+.+.+|..|.++|..+...+......++. ++...-+..+.+++..|....+.+|+.++........ ........+
T Consensus 371 ~~~~~~~~G~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~m~~~~~~~~~~~~-~~~~~~~~l 449 (492)
T PRK10459 371 IVIGGQLAGLIGVALGFLLVQIINTILSYFLMIKPVIGLSYRQYILSIWKPFYLSLPMLIVSYGLGLLLK-GHLALGMLL 449 (492)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHH
Confidence 55566678999999999999888777777766 3333222233456677766666666555544433221 112234567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 009985 485 LIHFSVGLTCFCISSIVIYHRERSFIYKIIRFR 517 (521)
Q Consensus 485 ~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~ 517 (521)
...+.+|+++|.......+.++.+++++..+.|
T Consensus 450 ~~~~~~g~~~Y~~~~~~~~~~~~~~~~~~~~~~ 482 (492)
T PRK10459 450 AVQVAAGVLAYLLMIVLSRHALVVEVKRQFCRS 482 (492)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHhh
Confidence 778899999999999988888888887775555
No 4
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=8.8e-30 Score=274.82 Aligned_cols=481 Identities=14% Similarity=0.088 Sum_probs=345.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhH-HHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhHH
Q 009985 11 SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADY-AIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAA 89 (521)
Q Consensus 11 ~~~~~~~w~~~~q~~~r~i~Fi~~~iLaRlLsP~~f-Glva~~l~~~~~~~~~l~~~g~~~Alir~~~~~~~~~~~~~~~ 89 (521)
++.|+..+..++++.+|+.+|+-..+++|.++||++ |.+++...+.......+.+.|+..++++.....++++++ ..+
T Consensus 1 ~~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~~~-~~~ 79 (502)
T TIGR01695 1 SLLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKEKE-ARR 79 (502)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhH-HHH
Confidence 467999999999999999999999999999999999 999986555434333455678999988743322111111 111
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhhhc---cCCCch----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHH
Q 009985 90 KLLK-VAWLTLPLGIFITIGACFFVLWWQGL---SYSNPY----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVV 161 (521)
Q Consensus 90 ~~~n-~~~~~i~~g~~~~~~~~~~~~~~~~~---~~~~~y----~~~~~v~~l~~ii~~l~~p~~~~~q~~l~f~~~~~~ 161 (521)
...+ ..|..+..++..+++......+.... ..+++. ...+++++.+.++..+.......+|.+.|++..+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 2222 33333333333333332221221111 123332 256788999999999999999999999999999888
Q ss_pred HHHHHHHhHHHHHHHHhhcccchhHHHHH--HHHHHHHHHHHHHHHHHHHHhc-ccccCCccccccCCcccccHHHHHHH
Q 009985 162 ETVATFSRCFTMCILIVKQYEMEKGIVFA--LSQVAYAASLFLGYWGYFLLFG-AFKTSDLFPFRLGNMMSYDKQLANMC 238 (521)
Q Consensus 162 ~~~a~~~~~~~~i~l~~~~~~~~~v~a~~--~~ql~~~~~~~i~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~k~l~~f~ 238 (521)
+....+...+ .+. ....+ +|+|+.+ ++.++...+..+.++.+.++++ +++|+ ++. +....|++++++
T Consensus 160 ~i~~~i~~i~-~~~--~~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~k~~l~~~ 229 (502)
T TIGR01695 160 PILFNIGVIL-SLL--FFDWN-YGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPR--FNF----RDPGLKRFLKLF 229 (502)
T ss_pred HHHHHHHHHH-HHH--HHHcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCc--CCC----CChhHHHHHHHH
Confidence 8776654433 222 22333 5666666 7777666665555443332211 11222 111 112358999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhhHHHHHHHHH
Q 009985 239 TLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAE 318 (521)
Q Consensus 239 ~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~~ 318 (521)
.|...+++..++.++.|+.+ +...+.+++|.|+.++++.+++...+..++..+.+|.+++...++ |.++.++.+++
T Consensus 230 ~p~~~~~~~~~~~~~id~~~-~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~---~~~~~~~~~~~ 305 (502)
T TIGR01695 230 LPTTLGSSASQITLLINTAL-ASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEG---NWNELRDLLNQ 305 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHH
Confidence 99999999999999999977 888999999999999999999887788899999999999998654 44678888999
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHhcC------CCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHhh
Q 009985 319 ALKLVLLIGLVFMAFGPSYSYSLVRLLYGK------KWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSN 392 (521)
Q Consensus 319 ~l~~~~~l~~~~~~~~~~~a~~li~ll~g~------kw~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~~~~ 392 (521)
.++....+++|+..+....+++++.+++|+ +|.++ . ++++++|+..++.+++......+++.|+++.....+
T Consensus 306 ~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~-~-~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~ 383 (502)
T TIGR01695 306 GIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMT-A-TILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINS 383 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHH
Confidence 999999999999999999999999999985 46665 3 499999999999999999999999999998766554
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcccccccCCChhHHHHHHHHHHHhhh
Q 009985 393 DSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQG-SSSFSFRSSLPSGWPILLVSGVITLFSE 471 (521)
Q Consensus 393 ~~~~~~s~i~i~~~~~l~~~~G~~G~i~a~~i~~~~ri~~~~~~i~~~~~~-~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 471 (521)
. ...++++..++.+++.+|..|..+|..+...+......++.++.... ...+.+++..|....+.+|+.++....+
T Consensus 384 ~---~~~~i~i~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~~m~~~~~~~~~ 460 (502)
T TIGR01695 384 V---ISVVLNALLSLLLIFPLGLVGIALATSAASMVSSVLLYLMLNRRLKGILPFGVLKVLAKLVIASAIIGGVLYLIVS 460 (502)
T ss_pred H---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 33456778888888889999999999999999888887777776533 2344556677766666666555554433
Q ss_pred hhhh-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 009985 472 RIFL-DRQDFWATFLIHFSVGLTCFCISSIVIYHRERSFIY 511 (521)
Q Consensus 472 ~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~ 511 (521)
.... ...+.+..+...+.+|+++|...+..++.+|.+++.
T Consensus 461 ~~~~~~~~~~~~~l~~~~~~g~~vY~~~~~~~~~~~~~~~~ 501 (502)
T TIGR01695 461 VSLGGVLVKNLLGLLAIGLIGLLVYFLGLALLKIEELNLLL 501 (502)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHhh
Confidence 1000 013456677888899999999999999888887764
No 5
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=5e-29 Score=267.91 Aligned_cols=469 Identities=14% Similarity=0.126 Sum_probs=317.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhHHHH-
Q 009985 13 SRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKL- 91 (521)
Q Consensus 13 ~~~~~w~~~~q~~~r~i~Fi~~~iLaRlLsP~~fGlva~~l~~~~~~~~~l~~~g~~~Alir~~~~~~~~~~~~~~~~~- 91 (521)
.|++.|.+++++.+++++++.+++++|.|+|||||.+++...+. .....+.+.|+..++.|.-.+..+++++++.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~-~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~ 80 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIY-FLFITLTTGGLPVAISKFVAEASAKNDRKNIKKIL 80 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHH-HHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHH
Confidence 47889999999999999999999999999999999999955543 4445567889999998863221110011122332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCch-hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHhH
Q 009985 92 LKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPY-AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRC 170 (521)
Q Consensus 92 ~n~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~y-~~~~~v~~l~~ii~~l~~p~~~~~q~~l~f~~~~~~~~~a~~~~~ 170 (521)
-+.+|+++..+++.++++..+..+......+++. ...+++++...++..+..+....+|++.|+|..+..+....+++.
T Consensus 81 ~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i~~~ 160 (488)
T TIGR02900 81 KVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSLYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQIVRI 160 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHHHHH
Confidence 3456777777776665554432222111223333 245677888888989999999999999999999999998888887
Q ss_pred HHHHHHHhhcc--c-chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccccCCcccccHHHHHHHHHHHHHHHH
Q 009985 171 FTMCILIVKQY--E-MEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFR 247 (521)
Q Consensus 171 ~~~i~l~~~~~--~-~~~v~a~~~~ql~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~l~~f~~~l~~~si~ 247 (521)
...+.+..... + .+++.+..++..+...+..+..+.+.++++..+++..+.++...+.+..|++++++.|.+.+++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~~~~ 240 (488)
T TIGR02900 161 SVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLSRFI 240 (488)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 66544432221 2 12343333444433333333222222211111122111111111122458999999999999999
Q ss_pred HHHHhhhhhhhhhhhcCC---------ccchhH-HHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhhHHHHHHHH
Q 009985 248 KLLLQEGEKLVLVWLDTP---------YNQAVY-GLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLA 317 (521)
Q Consensus 248 ~~llt~~d~liig~~~~~---------~~~G~Y-~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~ 317 (521)
.++.++.|++++|+..++ ++.|+| +.+.++.+++. .+..++..+..|.+++...++ |.++.++.++
T Consensus 241 ~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~-~~~~~l~~~~~p~~s~~~~~~---~~~~~~~~~~ 316 (488)
T TIGR02900 241 GSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPA-VITSSLSTALVPDISEAMAKK---NYSSIEKRIN 316 (488)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHH-HHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 999999999999987643 345655 46777778774 778899999999999998654 3456778888
Q ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHhhhHHHH
Q 009985 318 EALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLV 397 (521)
Q Consensus 318 ~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~kw~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~~~~~~~~~ 397 (521)
+.++....++.|+.++....+|+++.++++ |.++ . ++++++++..++.+++...+..+++.|+++...+.+. +
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~--~~~~-~-~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~---~ 389 (488)
T TIGR02900 317 QAIKISLLLGLITTVILLVIPDELGALFYG--RPDA-G-NFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSL---I 389 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCch-H-HHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHH---H
Confidence 999999999999999999999999999885 5554 3 4899999999999999999999999999987765543 3
Q ss_pred HHHHHHHHHHHHH--HhhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCCChhHHHHHHHHHHHhhhhhhh
Q 009985 398 FSVIYIVMNVILI--QSAGSVGLILANSLNMILRIIYSAIFIKHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFL 475 (521)
Q Consensus 398 ~s~i~i~~~~~l~--~~~G~~G~i~a~~i~~~~ri~~~~~~i~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~ 475 (521)
..++++..++.++ +.+|..|..+|..+...++.....++.++..+- +..+++..+....++.+. ++........
T Consensus 390 ~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~- 465 (488)
T TIGR02900 390 GAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKNIRI--TIDLSDFLIFALLGILVY-LGLSLLKYII- 465 (488)
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCC--cccHHHHHHHHHHHHHHH-HHHHHHHHHH-
Confidence 3456677777776 789999999999999998888888888776532 334666654322222221 1111111111
Q ss_pred ccchhhHHHHHHHHHHHHHHHH
Q 009985 476 DRQDFWATFLIHFSVGLTCFCI 497 (521)
Q Consensus 476 ~~~~~~~~~~~~~~~g~~~~~~ 497 (521)
+..+.+..++..+.+|.++|..
T Consensus 466 ~~~~~~~~~~~~~~~~~~~Y~~ 487 (488)
T TIGR02900 466 FNPNILINLLLIIILGFSLYIL 487 (488)
T ss_pred hhhhHHHHHHHHHHHHHHHHhc
Confidence 1123455666667777777653
No 6
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.97 E-value=1.2e-27 Score=256.75 Aligned_cols=390 Identities=17% Similarity=0.189 Sum_probs=284.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchh
Q 009985 7 DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREE 86 (521)
Q Consensus 7 ~~~~~~~~~~~w~~~~q~~~r~i~Fi~~~iLaRlLsP~~fGlva~~l~~~~~~~~~l~~~g~~~Alir~~~~~~~~~~~~ 86 (521)
+..++..|++.|...+++.+++++|+..++++|.++|||||++++...+. .....+.+.|+..++.|+....+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~-~~~~~i~~~G~~~ai~r~ia~~~~~~~-- 79 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAII-GLFSILADFGLPAAITREIAEYREKGE-- 79 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHH-HHHHHHHHcCCcHHHHHHHHHhhcccH--
Confidence 44567899999999999999999999999999999999999999966554 445667899999999998765544322
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccCCCchhHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHH
Q 009985 87 NAAKLLKVAW-LTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVA 165 (521)
Q Consensus 87 ~~~~~~n~~~-~~i~~g~~~~~~~~~~~~~~~~~~~~~~y~~~~~v~~l~~ii~~l~~p~~~~~q~~l~f~~~~~~~~~a 165 (521)
......... ..+........+.... .+...+. .+.+...++..++...+...........|+..+++..+......
T Consensus 80 -~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (480)
T COG2244 80 -YLLLILLSVLLLLLLALILLLLLLLI-AYLLAPI-DPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSS 156 (480)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Confidence 111111101 0111111111111111 1111111 12345677888888888888888888999999998877763332
Q ss_pred -HHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccccCCcccccHHHHHHHHHHHHH
Q 009985 166 -TFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQ 244 (521)
Q Consensus 166 -~~~~~~~~i~l~~~~~~~~~v~a~~~~ql~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~l~~f~~~l~~~ 244 (521)
.+......+. ....+ .+.|+.+.+.+.........++...++. ++ ..++. .....|++++++.|+..+
T Consensus 157 ~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~---~~~~~~~~l~~~~p~~~~ 225 (480)
T COG2244 157 IFLLAAVFALL--FAALG-LAVWALVLGAVVSLLVLLILLGKKKRGL----KR-PILRF---SLALLKELLRFGLPLLLS 225 (480)
T ss_pred HHHHHHHHHHH--HHhhh-HHHHHHHHHHHHHHHHHHHHHHHhhhhc----cc-cccCc---hhHHHHHHHHHhhHHHHH
Confidence 1221111111 11222 5788888888876555444433111110 11 11110 122458999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhhHHHHHHHHHHHHHHH
Q 009985 245 SFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVL 324 (521)
Q Consensus 245 si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~~~l~~~~ 324 (521)
++.+.+.++.|++++|++.++++.|+|+.+.++.+.+. .+..+++.+.+|.+|+..+++ |.+++++.+++.++...
T Consensus 226 ~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~-~~~~~l~~~l~P~~s~~~~~~---~~~~~~~~~~~~~~~~~ 301 (480)
T COG2244 226 SLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLL-IVASALNRVLFPALSRAYAEG---DRKALKKLLRQSLKLLL 301 (480)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHH-HHHHHHHHHHHHHHHHHHHcC---cHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997777777655 888899999999999998654 44566778889999999
Q ss_pred HHHHHHHHhcccchHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHhhhHHHHHHHHHHH
Q 009985 325 LIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIV 404 (521)
Q Consensus 325 ~l~~~~~~~~~~~a~~li~ll~g~kw~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~~~~~~~~~~s~i~i~ 404 (521)
+++.|...+....+++++.+++||+|.++ .+ +++++|...++..+++.....+++.++++...+.+ .+..+.++.
T Consensus 302 ~~~~p~~~~l~~~~~~~i~~~fg~~~~~~-~~-~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~---~~~~i~~~~ 376 (480)
T COG2244 302 LISIPALLGLLLLAPPIITLLFGEKYASA-AP-ILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLIS---LISALLNLI 376 (480)
T ss_pred HHHHHHHHHHHHHHhhhheeecCCcccch-hH-HHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHH---HHHHHHHHH
Confidence 99999999999999999999999999986 44 99999998889999998888999999998876544 344578888
Q ss_pred HHHHHHHhhchHHHHHHH
Q 009985 405 MNVILIQSAGSVGLILAN 422 (521)
Q Consensus 405 ~~~~l~~~~G~~G~i~a~ 422 (521)
+++.+++.+|..|..++.
T Consensus 377 l~~~li~~~g~~g~~~a~ 394 (480)
T COG2244 377 LNLLLIPRFGLIGAAIAT 394 (480)
T ss_pred HHhHHHHhhhhhhHHHHH
Confidence 999999999999999888
No 7
>PRK15099 O-antigen translocase; Provisional
Probab=99.97 E-value=2e-26 Score=243.09 Aligned_cols=408 Identities=11% Similarity=0.002 Sum_probs=270.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhHHHH
Q 009985 12 LSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKL 91 (521)
Q Consensus 12 ~~~~~~w~~~~q~~~r~i~Fi~~~iLaRlLsP~~fGlva~~l~~~~~~~~~l~~~g~~~Alir~~~~~~~~~~~~~~~~~ 91 (521)
..|+..|+..+++..++++|+.+++++|+|+|||||.+++...+. .....+.+.|+.+|..|.-.+.+++ +++.+++
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i-~~~~~~~~~G~~~a~~~~ia~~~~~--~~~~~~~ 79 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLI-TVLGVLAGAGIFNGVTKYVAQYHDQ--PQQLRAV 79 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHH-HHHHHHHcCCccceeeeeHHhcCCC--HHHHHHH
Confidence 678999999999999999999999999999999999999844444 3345566788877763332211111 1133333
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHhhhccCC-CchhHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHh
Q 009985 92 L-KVAWLTLPLGIFITIGACFFVLWWQGLSYS-NPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSR 169 (521)
Q Consensus 92 ~-n~~~~~i~~g~~~~~~~~~~~~~~~~~~~~-~~y~~~~~v~~l~~ii~~l~~p~~~~~q~~l~f~~~~~~~~~a~~~~ 169 (521)
. +.+|+++..|++++++......+......+ ++|....+..+...+...+...+...++...|.+........+.+++
T Consensus 80 ~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~ 159 (416)
T PRK15099 80 VGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDYQGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGSLIG 159 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 345666666776665554432222111222 33556666666666565655556656666555555555554444444
Q ss_pred HHHHHHHHhhcccch-hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccccCCcccccHHHHHHHHHHHHHHHHH
Q 009985 170 CFTMCILIVKQYEME-KGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRK 248 (521)
Q Consensus 170 ~~~~i~l~~~~~~~~-~v~a~~~~ql~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~l~~f~~~l~~~si~~ 248 (521)
.... .+.....|.+ ..++.+++|.+..+.. .+..+ +++ ..+....+ .+.+.+..|+++++|.|...+++..
T Consensus 160 i~l~-i~~~~~~Gv~Ga~iat~i~~~i~~~~~--~~~~~-~~~--~~~~~~~~--~~~~~~~~k~ll~~g~p~~~~~~~~ 231 (416)
T PRK15099 160 VAAY-YLCYRLGGYEGALLGLALVPALVVLPA--GIMLI-RRG--TIPLSYLK--PSWDNGLAGQLGKFTLMALITSVTL 231 (416)
T ss_pred HHHH-HHHHHHhcchHHHHHHHHHHHHHHHHH--HHHHH-Hcc--ceehHhhh--ccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3321 1111111323 2345555554432221 11111 111 00000001 1112234589999999999999999
Q ss_pred HHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHH
Q 009985 249 LLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGL 328 (521)
Q Consensus 249 ~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~~~l~~~~~l~~ 328 (521)
.+.+..|+.++++.++.++.|+|+.++++.+.+...+..++.++.+|..++.+ |+++.++.+++..+....++.
T Consensus 232 ~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~~------~~~~~~~~~~~~~~~~~~~~~ 305 (416)
T PRK15099 232 PVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRLT------EKRDITREIVKALKFVLPAVA 305 (416)
T ss_pred HHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------ChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998877899999999999999853 224456667778888888888
Q ss_pred HHHHhcccchHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHhhhHHHHHHHHHHHHHHH
Q 009985 329 VFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVI 408 (521)
Q Consensus 329 ~~~~~~~~~a~~li~ll~g~kw~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~~~~~~~~~~s~i~i~~~~~ 408 (521)
+........+|+++.+++||+|.++ .+ ++++++....+...+........+.++++..... ......+++.++++
T Consensus 306 ~~~~~~~l~a~~ii~l~~g~~~~~~-~~-~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~l~i~l~~~ 380 (416)
T PRK15099 306 AASFTVWLLRDFAIWLLFSNKFTAM-RD-LFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILA---EVSQFTLLTGFAHW 380 (416)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 8777777899999999999999987 44 8888887665555555444334444443322211 12233467788889
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009985 409 LIQSAGSVGLILANSLNMILRIIYSAIFIKHYF 441 (521)
Q Consensus 409 l~~~~G~~G~i~a~~i~~~~ri~~~~~~i~~~~ 441 (521)
+++.+|..|.+++..++..+....+.....+++
T Consensus 381 li~~~G~~G~a~a~~is~~~~~~~~~~~~~~~~ 413 (416)
T PRK15099 381 LIPLHGALGAAQAYMATYIVYFSLCCGVFLLYR 413 (416)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888887776665
No 8
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.87 E-value=1.6e-19 Score=177.97 Aligned_cols=271 Identities=14% Similarity=0.178 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhHHHHH
Q 009985 13 SRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLL 92 (521)
Q Consensus 13 ~~~~~w~~~~q~~~r~i~Fi~~~iLaRlLsP~~fGlva~~l~~~~~~~~~l~~~g~~~Alir~~~~~~~~~~~~~~~~~~ 92 (521)
.|+..|...+++.+++++|+.+++++|.++|||||.++...++. .....+.+.|++++..|+..+++++. +..+...
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~-~~~~~~~~~G~~~~~~r~~~~~~~~~--~~~~~~~ 78 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIV-SLLSILADLGLSQAIVRFIAEYKDKK--ELRSAYF 78 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHhhhhH--HHHHHHH
Confidence 58899999999999999999999999999999999999955544 44566889999999999876554421 1222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhHHHHHHHHHH-HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHhHH
Q 009985 93 KVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFAC-VLELLAEPLYILSQNLLLLRLRLVVETVATFSRCF 171 (521)
Q Consensus 93 n~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~y~~~~~v~~l~~-ii~~l~~p~~~~~q~~l~f~~~~~~~~~a~~~~~~ 171 (521)
.... ....+..+.+.+..........++......+..+.. ++...........|...+++.....+....+.+.+
T Consensus 79 ~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (273)
T PF01943_consen 79 SSVL----FLLLIFSLIFLLILLIASFFGNPSLSLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLLSLL 154 (273)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 111111111111111111112222333333333333 35555666666777777788777777777666665
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccccCCcccccHHHHHHHHHHHHHHHHHHHH
Q 009985 172 TMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLL 251 (521)
Q Consensus 172 ~~i~l~~~~~~~~~v~a~~~~ql~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~l~~f~~~l~~~si~~~ll 251 (521)
..+.+.... .+++....++.+..++..+..+.+.+.. ++++...+ +.+..|++++++.|++.+++...+.
T Consensus 155 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (273)
T PF01943_consen 155 LILLLLFLG---SSLWGFLLGLVISSLVSLIISLFYLRRK--LRPRFSFF-----SKKFFKEILRFGLPLFLSSLLSWLY 224 (273)
T ss_pred HHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHH--Hccccccc-----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544433222 2366666676666666544433332211 11111111 1224699999999999999999999
Q ss_pred hhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHh
Q 009985 252 QEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSA 301 (521)
Q Consensus 252 t~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~ 301 (521)
++.|+++++++.+++++|+|+.+.++++.+. .+..++.++.+|.++|++
T Consensus 225 ~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~-~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 225 SQIDRLIIGYFLGPEAVGIYSVAYRLASAIS-FLLSSISTVLFPRLSRLW 273 (273)
T ss_pred HHhHHHHHHHhCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999877 666777889999999863
No 9
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.78 E-value=2.2e-14 Score=152.77 Aligned_cols=303 Identities=17% Similarity=0.195 Sum_probs=227.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHH
Q 009985 127 QAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWG 206 (521)
Q Consensus 127 ~~~~v~~l~~ii~~l~~p~~~~~q~~l~f~~~~~~~~~a~~~~~~~~i~l~~~~~~~~~v~a~~~~ql~~~~~~~i~~~~ 206 (521)
...++.....++.++.......+|.+.||..-........+.-.+ ++.+.....+...+.+++++..+.++...+....
T Consensus 99 ~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~-~~~~~~~~~~~~~i~~la~g~~~g~~~~~l~~l~ 177 (451)
T PF03023_consen 99 QLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIIL-SLLLLSNSWGQENIYALAWGVLIGAIIQFLIQLP 177 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHH-HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999989999988888766655444433222 1111111112123777777777777766544332
Q ss_pred HHHHhcccccCCccccccCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHH
Q 009985 207 YFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVF 286 (521)
Q Consensus 207 ~~~~~~~~~~~~~~p~~~~~~~~~~k~l~~f~~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~ 286 (521)
. .++...+.+..++.+ + +-.|++++...|.+..+...+++.-.|+.+-+. .++.....++-|+++.++|...+.
T Consensus 178 ~-~~~~~~~~~~~~~~~---~-~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~-l~~G~vs~l~YA~~l~~lp~~i~~ 251 (451)
T PF03023_consen 178 Y-LRRFGFRFRPKFDWR---D-PNLKRFLKLAIPLLLSSSISQINILVDRALASF-LGEGSVSALNYAQRLYQLPLGIFA 251 (451)
T ss_pred H-HHHCCCcccccCCCC---C-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHH
Confidence 2 222111111112211 1 124889999999999999999999999998887 557788999999999999999999
Q ss_pred hhhhHhhHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcC-CCCCCc---hhHHHHHH
Q 009985 287 LPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK-KWSDGE---ASTALRYY 362 (521)
Q Consensus 287 ~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~-kw~~~~---~~~il~~~ 362 (521)
.++..+.+|.+|+..+++ |.++.++..++.++...++.+|+.++....++|++.+++.. +..+.+ ...++++|
T Consensus 252 ~~i~tv~~P~ls~~~~~~---d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y 328 (451)
T PF03023_consen 252 VSISTVVFPKLSRLAAEG---DWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIY 328 (451)
T ss_pred HHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 999999999999988765 45678888999999999999999999999999999999943 333322 23589999
Q ss_pred HHHHHHHHhhhhHHHHHHHhCCHHHHHHhhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009985 363 CLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQ 442 (521)
Q Consensus 363 ~~~~~~~~~ng~~eaf~~a~~~~~~l~~~~~~~~~~s~i~i~~~~~l~~~~G~~G~i~a~~i~~~~ri~~~~~~i~~~~~ 442 (521)
+...|.++++..+...+.|.++++...+. ..+..++++.+++.+.+.+|..|+++|+.+...+.....+...++...
T Consensus 329 ~~~l~~~~l~~ll~r~fya~~~~~~~~~~---~~~~~~lni~l~~~l~~~~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 329 ALGLPFYALNDLLSRVFYALGDTKTPVRI---SVISVVLNIILSILLVPFFGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHhHHHHHHHHHHHHHHHccCcHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999998888899998776543 345556788888889999999999999999998888888777777653
No 10
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.77 E-value=2.2e-16 Score=154.14 Aligned_cols=248 Identities=17% Similarity=0.304 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 009985 28 GIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITI 107 (521)
Q Consensus 28 ~i~Fi~~~iLaRlLsP~~fGlva~~l~~~~~~~~~l~~~g~~~Alir~~~~~~~~~~~~~~~~~~n~~~~~i~~g~~~~~ 107 (521)
+++|+..++++|.++|||||..+...++.. ....+.+.|++++++|..+++++ +..+...... ..+...++
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~-~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~ 72 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVS-ILSIVASLGLRQSLVRSAARDKQ-----DIRSLLRFSL---LVSLLLAV 72 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCHH-----HHHHHHHHHH---HHHHHHHH
Confidence 579999999999999999999999665554 44567799999999995443322 3444333322 12222222
Q ss_pred HHHHHHHHhhhccCCCc-hhHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHhHHHHHHHHhhcccchhH
Q 009985 108 GACFFVLWWQGLSYSNP-YAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKG 186 (521)
Q Consensus 108 ~~~~~~~~~~~~~~~~~-y~~~~~v~~l~~ii~~l~~p~~~~~q~~l~f~~~~~~~~~a~~~~~~~~i~l~~~~~~~~~v 186 (521)
+.+.+..+ .+...+++ +...+.+.++..+.+.+.+.....++.+.|++.....+......+.+..+.+..... .+
T Consensus 73 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 148 (251)
T PF13440_consen 73 ILAILAIL-IAYFFGDPELFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYLGL---NL 148 (251)
T ss_pred HHHHHHHH-HHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHh---hH
Confidence 22221111 11122333 334556677778888888888888999999998888887777777444444332222 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccccCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCc
Q 009985 187 IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY 266 (521)
Q Consensus 187 ~a~~~~ql~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~l~~f~~~l~~~si~~~llt~~d~liig~~~~~~ 266 (521)
++..+...+..+...+..+...+. +++ .+++ ... ++.++++.++..+++...+.+++|+++++.+++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~ 217 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLRR----KLR--LSFK----FSW-RRLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPE 217 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc----ccC--CCch----hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 444444444433333332322110 111 1111 112 34899999999999999999999999999988999
Q ss_pred cchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHH
Q 009985 267 NQAVYGLVDKLGSLVVRMVFLPFEESSYATFAR 299 (521)
Q Consensus 267 ~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~ 299 (521)
+.|+|+.+.++...+...+.+++.++.+|.+||
T Consensus 218 ~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 218 AVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999989999999999999887
No 11
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.66 E-value=1.8e-10 Score=122.19 Aligned_cols=413 Identities=15% Similarity=0.122 Sum_probs=262.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHH----HHHHHHHhHHHHHHHHhc---ccccC
Q 009985 7 DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLF----VTCVLFLSREGFRRACMR---ADIKC 79 (521)
Q Consensus 7 ~~~~~~~~~~~w~~~~q~~~r~i~Fi~~~iLaRlLsP~~fGlva~~l~~~----~~~~~~l~~~g~~~Alir---~~~~~ 79 (521)
+-..++.|+..+.....+++|+.+|+=-+++|+.++..... -+..+- -..--.+.+..|.+|-+- +.+.+
T Consensus 4 ~~~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~a---DAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~ 80 (518)
T COG0728 4 KSKMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAA---DAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKK 80 (518)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHH---HHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHc
Confidence 34566788888899999999999999999999999985433 212221 111223445566777651 11112
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hccCCCchh----HHHHHHHHHHHHHHhhhHHHHHHHh
Q 009985 80 DGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQ----GLSYSNPYA----QAIFINGFACVLELLAEPLYILSQN 151 (521)
Q Consensus 80 ~~~~~~~~~~~~~n~~~~~i~~g~~~~~~~~~~~~~~~----~~~~~~~y~----~~~~v~~l~~ii~~l~~p~~~~~q~ 151 (521)
+.++...++++.+... ...+.+.++++..+..++.. ++.+++.+. ...+++.--..+.++.......++.
T Consensus 81 ~~~~~~~~f~~~v~~~--l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs 158 (518)
T COG0728 81 EGEEAARFFSRLVTGL--LTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNS 158 (518)
T ss_pred chhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2122222344432211 11122223322222222222 222223322 2345555555566666666666666
Q ss_pred hhhhhhhhHHHHHHHHHhHHHHHHHHh-hcccchh-HHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccCCccccccCCcc
Q 009985 152 LLLLRLRLVVETVATFSRCFTMCILIV-KQYEMEK-GIVFALSQVAYAASLFLGYWGYFLLFG-AFKTSDLFPFRLGNMM 228 (521)
Q Consensus 152 ~l~f~~~~~~~~~a~~~~~~~~i~l~~-~~~~~~~-v~a~~~~ql~~~~~~~i~~~~~~~~~~-~~~~~~~~p~~~~~~~ 228 (521)
..+|..- ..+-+.--+..++... ..+..++ .++++++-++.++...+..+...+..+ .++|+ ++.+ +.
T Consensus 159 ~~~F~~~----a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~--~~~~---~~ 229 (518)
T COG0728 159 RNRFFIP----AFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPR--FGFK---DP 229 (518)
T ss_pred cCeechh----hhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCC--CCCC---ch
Confidence 6666544 4443333333332222 2222233 677777877777776655443222211 11122 2222 11
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchh
Q 009985 229 SYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQK 308 (521)
Q Consensus 229 ~~~k~l~~f~~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~ 308 (521)
-.|+..+.-.+.....-..|++.-.|+.+-+.. .....-.++-|+++-++|..++--.+..+.+|.+||...++ |
T Consensus 230 -~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l-~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~---~ 304 (518)
T COG0728 230 -GLKRFLKLMLPALLGVSISQINLLIDTAIASFL-AEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANG---D 304 (518)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcC---C
Confidence 237888888888889999999988888765554 45556678889999999999999999999999999998765 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcC-CCCCCc---hhHHHHHHHHHHHHHHhhhhHHHHHHHhCC
Q 009985 309 SKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK-KWSDGE---ASTALRYYCLYVVVLAMNGTSEAFLHAVAT 384 (521)
Q Consensus 309 ~~~l~~~~~~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~-kw~~~~---~~~il~~~~~~~~~~~~ng~~eaf~~a~~~ 384 (521)
.++.++..+.-+|...++++|..++....|+|++.+++.. +..+.+ ....+..|.+-.|..++..+...-+.|..+
T Consensus 305 ~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d 384 (518)
T COG0728 305 WPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYARED 384 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccC
Confidence 3456677888999999999999999999999999999965 444432 235788888888888888888877888888
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009985 385 EDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYF 441 (521)
Q Consensus 385 ~~~l~~~~~~~~~~s~i~i~~~~~l~~~~G~~G~i~a~~i~~~~ri~~~~~~i~~~~ 441 (521)
++.=.+ .-.+..++++.+++.+.+.+|..|+++|..++........++..++-.
T Consensus 385 ~ktP~~---i~ii~~~~n~~l~~~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 385 TKTPMK---IAIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred CCcChH---HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 755332 445666789999988888899999888877776555555555554443
No 12
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.63 E-value=1.4e-12 Score=133.64 Aligned_cols=317 Identities=16% Similarity=0.089 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhHHH-HHHHHHHH
Q 009985 20 LATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAK-LLKVAWLT 98 (521)
Q Consensus 20 ~~~q~~~r~i~Fi~~~iLaRlLsP~~fGlva~~l~~~~~~~~~l~~~g~~~Alir~~~~~~~~~~~~~~~~-~~n~~~~~ 98 (521)
++.++..++.+++-+.++.+ +++++.|.+++.. -+......+ -.|+.++..+.-.....++++++.++ .-+..+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~a~-~i~~~~~~~-~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 3 ILANILQPLLGLVDTAFVGH-LGPVDLAAVSLGS-SVFMFLFSI-LMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHhH-HHHHHHHHH-HHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 56788888888887777776 6799999888853 333333333 36777776433221100000112222 22345555
Q ss_pred HHHHHHHHHHHHHHHHHhhhccC-CCch----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHhHHHH
Q 009985 99 LPLGIFITIGACFFVLWWQGLSY-SNPY----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTM 173 (521)
Q Consensus 99 i~~g~~~~~~~~~~~~~~~~~~~-~~~y----~~~~~v~~l~~ii~~l~~p~~~~~q~~l~f~~~~~~~~~a~~~~~~~~ 173 (521)
...++.++++......+...... +++. ...++++++..++..+.......+|...+++.....+..+.+++....
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 55666655554333222221111 2222 246788899999999888888888988889988888888777766665
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccccCCcccccHHHHHHHHHHHHHHHHHHHHhh
Q 009985 174 CILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQE 253 (521)
Q Consensus 174 i~l~~~~~~~~~v~a~~~~ql~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~l~~f~~~l~~~si~~~llt~ 253 (521)
..+.....+.+++.+.+++.++..++..+..+.+.+++.+.+++ ++.+.+.+....|++++++.|.+.+++..++.++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~ 237 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLK--WEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFA 237 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc--cccccCCCHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 54432011212355555555555555444333222221100111 0000111122358999999999999999999999
Q ss_pred hhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009985 254 GEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAF 333 (521)
Q Consensus 254 ~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~~~l~~~~~l~~~~~~~ 333 (521)
.|+.++++ .+.++.|.|+.++++.+++. .+...+..+..|..++...++ |.++.++.+++.++....++.|+..+
T Consensus 238 ~~~~i~~~-~g~~~v~~~~~a~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (342)
T TIGR00797 238 LLALLVAR-LGSIALAAHQIALNVESLLF-MPAFGFGIAVSILVGQALGAG---DPKRAKEVARVALKLSLLLGLVLAII 312 (342)
T ss_pred HHHHHHHH-cCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988876 68899999999999988764 677789999999999876543 45667788888999999999999888
Q ss_pred cccchHHHHHHHh
Q 009985 334 GPSYSYSLVRLLY 346 (521)
Q Consensus 334 ~~~~a~~li~ll~ 346 (521)
....++++.+++.
T Consensus 313 l~~~~~~i~~~~~ 325 (342)
T TIGR00797 313 LILFREFIARLFT 325 (342)
T ss_pred HHHHHHHHHHHhC
Confidence 8888999877654
No 13
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.60 E-value=6e-11 Score=126.75 Aligned_cols=419 Identities=14% Similarity=0.067 Sum_probs=263.4
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHhHHHHHH---HHhcccccCCC
Q 009985 5 PVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRR---ACMRADIKCDG 81 (521)
Q Consensus 5 ~~~~~~~~~~~~~w~~~~q~~~r~i~Fi~~~iLaRlLsP~~fGlva~~l~~~~~~~~~l~~~g~~~---Alir~~~~~~~ 81 (521)
++++-++..+-+.=..+++....+.+++-+.++.|++++++.+-+++...+.... ..+. .|+.. +++-+....+|
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~-~~~~~g~~~lvsq~~Ga~~ 84 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIG-LMVGMGTGSLLSIKRGEGD 84 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHH-HHHhccHHHHHHHHhcCCC
Confidence 4567777777778888999999999999999999999998887776633332211 1111 12211 23322222211
Q ss_pred ccchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCc--h---hHHHHHHHHHHHHHHhhhHHHHHHHhhhhh
Q 009985 82 ASREENAAKLL-KVAWLTLPLGIFITIGACFFVLWWQGLSYSNP--Y---AQAIFINGFACVLELLAEPLYILSQNLLLL 155 (521)
Q Consensus 82 ~~~~~~~~~~~-n~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~--y---~~~~~v~~l~~ii~~l~~p~~~~~q~~l~f 155 (521)
+ ++.++.. ...+++..+++...++......+....+-+++ + ...+++++++.++..+.......+|..-+-
T Consensus 85 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~ 161 (453)
T PRK09575 85 L---EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESP 161 (453)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 1 1223322 33445555555554444332222211122222 1 246778888888888877777677766666
Q ss_pred hhhhHHHHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccc-cCCcccccHHH
Q 009985 156 RLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFR-LGNMMSYDKQL 234 (521)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~i~l~~~~~~~~~v~a~~~~ql~~~~~~~i~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~k~l 234 (521)
+.-......+.+++......++. ..+ +|+.+-+++..+...+..+..+.+..++ +....+..+ .+.+.+..|+.
T Consensus 162 ~~~~~~~~~~~~~ni~l~~~li~-~~~-~Gi~Gaa~At~is~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i 236 (453)
T PRK09575 162 NLATGLMVIGALINIVLDYLFIG-WLD-WGLTGAAIATALAQLVVTVLGLGYFFSS---RANIRLTLKELRFNWSLAPKI 236 (453)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH-hCC-chhHHHHHHHHHHHHHHHHHHHHHHHCC---CceeEEeeccCCcCHHHHHHH
Confidence 66666666666666555444432 222 4544434444333333322222222111 011111110 01112234788
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhhHHHHH
Q 009985 235 ANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGN 314 (521)
Q Consensus 235 ~~f~~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~ 314 (521)
++.|.|...+.....+..-.-..+++++-+.++++.|+.+.++.++.. .....+....-|.-++..-.+ |.|+.++
T Consensus 237 l~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~-~~~~gi~~a~~~lvg~~~Ga~---~~~~~~~ 312 (453)
T PRK09575 237 VLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYY-LVAEGIAEGMQPPVSYYFGAR---QYDNIKK 312 (453)
T ss_pred HHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHhcCC---ChHHHHH
Confidence 999999988888877777777777887766678999999999887754 567788899999999987655 4457778
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCC--CCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHhh
Q 009985 315 SLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKK--WSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSN 392 (521)
Q Consensus 315 ~~~~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~k--w~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~~~~ 392 (521)
.++..+++....+.+........+++++.++-.++ =.+. +..++.+.++..|+.+++.....++++.|+++.....+
T Consensus 313 ~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~-~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 391 (453)
T PRK09575 313 LLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAE-TIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFIS 391 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 88888999888888888877888899888765322 1111 23588899999999999999999999999998765444
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009985 393 DSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYF 441 (521)
Q Consensus 393 ~~~~~~s~i~i~~~~~l~~~~G~~G~i~a~~i~~~~ri~~~~~~i~~~~ 441 (521)
... ..+.+..++++.+.+|..|+-++..+...++........++..
T Consensus 392 ~~~---~~v~ip~~~ll~~~~G~~Gvw~a~~~~~~~~~~~~~~~~~~~~ 437 (453)
T PRK09575 392 IGN---MLIQLPFLFILPKWLGVDGVWLAMPLSNIALSLVVAPMLWRDV 437 (453)
T ss_pred HHh---HHHHHHHHHHHHHHHCcchHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 222 2345667776665589999999999888887776665555443
No 14
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.59 E-value=3.1e-11 Score=129.07 Aligned_cols=414 Identities=15% Similarity=0.088 Sum_probs=251.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHh----cccccCCCccchh
Q 009985 11 SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACM----RADIKCDGASREE 86 (521)
Q Consensus 11 ~~~~~~~w~~~~q~~~r~i~Fi~~~iLaRlLsP~~fGlva~~l~~~~~~~~~l~~~g~~~Ali----r~~~~~~~~~~~~ 86 (521)
...+-..-..+.+....+.+++-+.++.| +++++.+-++....+... ...+. .|+..+.. |....+|. +
T Consensus 13 ~il~~~~P~~~~~~~~~~~~~~d~~~i~~-~g~~~laa~~~~~~~~~~-~~~~~-~g~~~a~~~~vs~~~g~~~~----~ 85 (456)
T PRK01766 13 QLLALALPILLAQVAQTAMGFVDTVMAGG-VSATDLAAVAIGTSIWLP-VILFG-HGLLLALTPIVAQLNGAGRR----E 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHhcCCCh----H
Confidence 45555677788888899989888888777 577777666653332211 11122 34444332 22111111 1
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhccCCCch-----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhH
Q 009985 87 NAAKLLK-VAWLTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLV 160 (521)
Q Consensus 87 ~~~~~~n-~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~y-----~~~~~v~~l~~ii~~l~~p~~~~~q~~l~f~~~~~ 160 (521)
+.++..+ ..++++..++.+.++......+.......++. ...+++++...+...+.......+|..-+.|.-.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 3333332 23344445554443332221111111222332 13466777777777777777777888788888888
Q ss_pred HHHHHHHHhHHHHHHHHhhc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccccCCcccccHHHHHH
Q 009985 161 VETVATFSRCFTMCILIVKQ---YEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANM 237 (521)
Q Consensus 161 ~~~~a~~~~~~~~i~l~~~~---~~~~~v~a~~~~ql~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~l~~f 237 (521)
....+.+++......++... ++ +|+.+-+++..+...+..+.++.+.+++++.+...........+.+..|++++.
T Consensus 166 ~~~i~~ivni~l~~~li~~~~~~~~-~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l 244 (456)
T PRK01766 166 IGFLGLLINIPLNYIFIYGKFGFPE-LGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKL 244 (456)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcc-cccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHc
Confidence 88777777666654443211 12 343333334333333332222222221110000000110001112235899999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhhHHHHHHHH
Q 009985 238 CTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLA 317 (521)
Q Consensus 238 ~~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~ 317 (521)
+.|...+.+........+..+++++ +.++++.|+.+.++.++.. .+...+....-+..++...++ |.++.++..+
T Consensus 245 ~~P~~~~~~~~~~~~~~~~~~~~~~-G~~~lAa~~i~~~i~~~~~-~~~~gl~~a~~~~v~~~~Ga~---~~~~~~~~~~ 319 (456)
T PRK01766 245 GLPIGLAIFFEVSLFAVVTLLVSPL-GTVTVAAHQIALNFSSLLF-MLPLSLAMALTIRVGFELGAG---RTLDARQYAY 319 (456)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHH
Confidence 9999999999999999999999985 6788999999999887764 445567777777778777554 4567778888
Q ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHhcCC-CCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHhhhHHH
Q 009985 318 EALKLVLLIGLVFMAFGPSYSYSLVRLLYGKK-WSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLL 396 (521)
Q Consensus 318 ~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~k-w~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~~~~~~~~ 396 (521)
..+++...++.+........++++..++..|. =.+- .-.++.+.++..|..+++...++++++.|+++.-...+....
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~-~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~ 398 (456)
T PRK01766 320 IGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVAL-ASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAY 398 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHH
Confidence 88888888888888878888899888654321 1111 234778888888999999999999999999987665543211
Q ss_pred HHHHHHHHHHHHHHH--hhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009985 397 VFSVIYIVMNVILIQ--SAGSVGLILANSLNMILRIIYSAIFIKHY 440 (521)
Q Consensus 397 ~~s~i~i~~~~~l~~--~~G~~G~i~a~~i~~~~ri~~~~~~i~~~ 440 (521)
..+.+..++++.. .+|..|+.++..+...++.....+..++.
T Consensus 399 --~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~ 442 (456)
T PRK01766 399 --WVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKL 442 (456)
T ss_pred --HHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 1344555555543 47999999999998888877666665443
No 15
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.53 E-value=5.6e-10 Score=119.64 Aligned_cols=406 Identities=13% Similarity=0.006 Sum_probs=249.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHhHHHHHHHH---h-cccccCCCcc
Q 009985 8 HSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRAC---M-RADIKCDGAS 83 (521)
Q Consensus 8 ~~~~~~~~~~w~~~~q~~~r~i~Fi~~~iLaRlLsP~~fGlva~~l~~~~~~~~~l~~~g~~~Al---i-r~~~~~~~~~ 83 (521)
.-+++.+-+.-.+++++...+.+++-+.++.| +++++.+-+++...+... ...+. .|+..|. + |.-..+|.+
T Consensus 8 ~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~-lg~~alAa~~i~~~i~~~-~~~~~-~gl~~~~~~i~aq~~Ga~~~~- 83 (464)
T PRK00187 8 ELKAILRLAGPLIASQLAHMLMVFTDTLMMGR-LGPEALAGGGLGAASYSF-VSIFC-VGVIAAVGTLVAIRHGAGDIE- 83 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHhcCCChh-
Confidence 34556676777889999999999999999999 588877766663333222 22222 4444433 2 222112111
Q ss_pred chhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhccCCCch-----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhh
Q 009985 84 REENAAKLLK-VAWLTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRL 157 (521)
Q Consensus 84 ~~~~~~~~~n-~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~y-----~~~~~v~~l~~ii~~l~~p~~~~~q~~l~f~~ 157 (521)
+.++..+ ..++.+.++++..++.. ...+....+-+++. ..-++++++..+...+.......+|..-+.+.
T Consensus 84 ---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~ 159 (464)
T PRK00187 84 ---GATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGP 159 (464)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 2333322 23344444444433322 11111122223332 14567777777777777777767777777777
Q ss_pred hhHHHHHHHHHhHHHHHHHHhhccc--chhH----HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccc-ccCCcccc
Q 009985 158 RLVVETVATFSRCFTMCILIVKQYE--MEKG----IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPF-RLGNMMSY 230 (521)
Q Consensus 158 ~~~~~~~a~~~~~~~~i~l~~~~~~--~~~v----~a~~~~ql~~~~~~~i~~~~~~~~~~~~~~~~~~p~-~~~~~~~~ 230 (521)
-......+.+++.....+++....+ .+|+ |+.++++.... +.++.+..+++..+ +..+.+ ....+...
T Consensus 160 ~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 234 (464)
T PRK00187 160 VMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMA----LALALYIRRHPAYA-AYPLRKGLSRPSRAA 234 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHH----HHHHHHHHhcchhh-hhhhhccccCCCHHH
Confidence 7777777777766555444321111 1333 55555544332 22222222211000 000100 00112223
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhhH
Q 009985 231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 310 (521)
Q Consensus 231 ~k~l~~f~~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~ 310 (521)
.|++++.+.|...+.+........|..++|+ ++.++++-|+.++++.++.. .+..-+....-+.-++..-++ |.+
T Consensus 235 ~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~-~G~~alAa~~i~~~i~~l~~-~~~~gi~~a~~~lvgq~~Ga~---~~~ 309 (464)
T PRK00187 235 LRELWRLGLPIGGTYAVEVGLFTFAALCMGA-LGSTQLAAHQIALQIVSVAF-MVPVGLSYAVTMRVGQHYGAG---RLL 309 (464)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCC---CHH
Confidence 5899999999999999999999999999998 55689999999999988654 556678888888888887554 445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcC-CCCCCc----hhHHHHHHHHHHHHHHhhhhHHHHHHHhCCH
Q 009985 311 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK-KWSDGE----ASTALRYYCLYVVVLAMNGTSEAFLHAVATE 385 (521)
Q Consensus 311 ~l~~~~~~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~-kw~~~~----~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~ 385 (521)
+.++..+..+.+...++.+........++++++++-++ +-++.+ ...++++.|+..|+.+++......+.+.|++
T Consensus 310 ~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~ 389 (464)
T PRK00187 310 EARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDA 389 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCcc
Confidence 67777888888888888777777777888999887543 221111 2247888888999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHHH
Q 009985 386 DQLKRSNDSLLVFSVIYIVMNVILIQS--AGSVGLILANSLNMILRIIYS 433 (521)
Q Consensus 386 ~~l~~~~~~~~~~s~i~i~~~~~l~~~--~G~~G~i~a~~i~~~~ri~~~ 433 (521)
+.-...+.. ..-.+.+..++++... +|..|+-++..+...++....
T Consensus 390 ~~~~~~~~~--~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~ 437 (464)
T PRK00187 390 RTTFLIGLA--CYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVAL 437 (464)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHH
Confidence 876644421 1124556666666643 688888888777766654433
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.46 E-value=3.2e-09 Score=113.31 Aligned_cols=412 Identities=16% Similarity=0.093 Sum_probs=274.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHH--hHHHHHHHHhcccccCCCccch
Q 009985 8 HSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFL--SREGFRRACMRADIKCDGASRE 85 (521)
Q Consensus 8 ~~~~~~~~~~w~~~~q~~~r~i~Fi~~~iLaRlLsP~~fGlva~~l~~~~~~~~~l--~~~g~~~Alir~~~~~~~~~~~ 85 (521)
..|.+.+=+.=.+++++.+.+.+++=+..+.|+. +|+.+-+++...++.....+. ...|...-.=|.-..+|.+
T Consensus 15 ~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~-~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~--- 90 (455)
T COG0534 15 ILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG-AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRK--- 90 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchH---
Confidence 5555666555578899999999999999999987 888888888555432222222 1222222121332222221
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCc----h-hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhh
Q 009985 86 ENAAK-LLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNP----Y-AQAIFINGFACVLELLAEPLYILSQNLLLLRLRL 159 (521)
Q Consensus 86 ~~~~~-~~n~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~----y-~~~~~v~~l~~ii~~l~~p~~~~~q~~l~f~~~~ 159 (521)
+.++ .-+..|+++.+|+.+.++......+.....-+++ + ..-+++..++.+...+.......++..-|.|.-.
T Consensus 91 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 91 -KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 2333 3345566666675555444332211111111212 1 2457888899999999999988889889999999
Q ss_pred HHHHHHHHHhHHHHHHHHhhc---ccchh-HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccc-cCCcccccHHH
Q 009985 160 VVETVATFSRCFTMCILIVKQ---YEMEK-GIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFR-LGNMMSYDKQL 234 (521)
Q Consensus 160 ~~~~~a~~~~~~~~i~l~~~~---~~~~~-v~a~~~~ql~~~~~~~i~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~k~l 234 (521)
.+...+.+...+.-.++++.. .|..| -||-++++.+..+... .+..+++ ++...+..+ ...+.+..|++
T Consensus 170 ~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~i 243 (455)
T COG0534 170 YILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLL----IYLLRKK--RLLSLFKKKLLKPDRKLLKEI 243 (455)
T ss_pred HHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHH----HHHHhcc--hhhhhhhhhccCCCHHHHHHH
Confidence 999999998888877665432 22222 3666666665544332 2222110 000111010 01122356899
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhhHHHHH
Q 009985 235 ANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGN 314 (521)
Q Consensus 235 ~~f~~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~ 314 (521)
++.|.|...+.+........-..+++++- .+.++-|+.+.++.++.. .....+.+..-|.-.+..-.+ |.++.++
T Consensus 244 ~~lG~p~~~~~~~~~~~~~~~~~~~~~~G-~~~lAa~~i~~~i~~~~~-~~~~gi~~a~~~lvG~~~Ga~---~~~~a~~ 318 (455)
T COG0534 244 LRLGLPIFLESLSESLGFLLLTLFVARLG-TVALAAYGIALRIASFIF-MPPFGIAQAVTILVGQNLGAG---NYKRARR 318 (455)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCC---CHHHHHH
Confidence 99999999999999988888888888876 888899999999988766 556678888888888877554 3456777
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcC-CCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHhhh
Q 009985 315 SLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK-KWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSND 393 (521)
Q Consensus 315 ~~~~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~-kw~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~~~~~ 393 (521)
..+..+++...++..........+++++.++..+ +-.+. +..++.+.+.+.|+.+++......+++.|+++.-...
T Consensus 319 ~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~-~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~-- 395 (455)
T COG0534 319 AARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIAL-AVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFII-- 395 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHH--
Confidence 7888888888888777777778888999987765 11111 2357888888999999999999999999999765532
Q ss_pred HHHHHH--HHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009985 394 SLLVFS--VIYIVMNVILIQS-AGSVGLILANSLNMILRIIYSAIFIKHY 440 (521)
Q Consensus 394 ~~~~~s--~i~i~~~~~l~~~-~G~~G~i~a~~i~~~~ri~~~~~~i~~~ 440 (521)
...+ .+.+...+++... +|..|+-++..+...+|.....+..++.
T Consensus 396 --~~~~~~~~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~~~~ 443 (455)
T COG0534 396 --SLLSYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRLRRG 443 (455)
T ss_pred --HHHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2232 2335666666666 8999999999999999888887776554
No 17
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.35 E-value=8.2e-08 Score=102.27 Aligned_cols=412 Identities=12% Similarity=0.042 Sum_probs=234.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHH---HHHHHHHHhHHHHHHHHhcccccCCCccch
Q 009985 9 STSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHL---FVTCVLFLSREGFRRACMRADIKCDGASRE 85 (521)
Q Consensus 9 ~~~~~~~~~w~~~~q~~~r~i~Fi~~~iLaRlLsP~~fGlva~~l~~---~~~~~~~l~~~g~~~Alir~~~~~~~~~~~ 85 (521)
.++..+-+.=.+++|+...+.+++-+.++.|+.++++..-+++...+ .......+. .|. .+++-+....+|.+
T Consensus 8 ~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~-~g~-~~lvsq~~Ga~~~~-- 83 (441)
T PRK10367 8 DKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLR-MST-TGLTAQAFGAKNPQ-- 83 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHhCCCCHH--
Confidence 44556666667889999999999999999998788766655553222 222111111 221 23343322222211
Q ss_pred hhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCch-----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhh
Q 009985 86 ENAAKLL-KVAWLTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRL 159 (521)
Q Consensus 86 ~~~~~~~-n~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~y-----~~~~~v~~l~~ii~~l~~p~~~~~q~~l~f~~~~ 159 (521)
+.++.. +..++++..++++.+.......+.....-+++. ..-+++++++.+...+.......++..-|-|.-.
T Consensus 84 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 162 (441)
T PRK10367 84 -ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPV 162 (441)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 222222 334444444444432222111111111112221 1456777778788777777777788777778777
Q ss_pred HHHHHHHHHhHHHHHHHHhhc-ccchh-HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccccCCcccccHHHHHH
Q 009985 160 VVETVATFSRCFTMCILIVKQ-YEMEK-GIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANM 237 (521)
Q Consensus 160 ~~~~~a~~~~~~~~i~l~~~~-~~~~~-v~a~~~~ql~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~l~~f 237 (521)
.+...+.++..+....++... .|..| -|+.+++|.+..+... ++.+.+.+ +++...-+.+++. ....|+.++.
T Consensus 163 ~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~--~~~~~~~~--~~~~~~~~~~~~~-~~~~~~il~i 237 (441)
T PRK10367 163 ILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGL--LMVRKVLK--LRGISLEMLKTAW-RGNFRRLLAL 237 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHh--hccccHHHhhhhh-HHHHHHHHHh
Confidence 777777777666555443221 12222 3666666665543322 12121100 0110000011100 0134889999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhhHHHHHHHH
Q 009985 238 CTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLA 317 (521)
Q Consensus 238 ~~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~ 317 (521)
+.|...+..........-..+++++ +.++++-|+.+.++.++.. .....+.+..-|.-++..-.+ |.++.++..+
T Consensus 238 g~P~~~~~~~~~~~~~~~~~~~~~~-G~~alAa~~I~~~i~~~~~-~~~~gl~~a~~~lvg~~~Ga~---~~~~a~~~~~ 312 (441)
T PRK10367 238 NRDIMLRSLLLQLCFGAITVLGARL-GSDIIAVNAVLMTLLTFTA-YALDGFAYAVEAHSGQAYGAR---DGSQLLDVWR 312 (441)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHcCC---CHHHHHHHHH
Confidence 9999999999988888888888875 5678999999999988755 556678888889988887655 3456677777
Q ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHhcCC--CCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHhhhHH
Q 009985 318 EALKLVLLIGLVFMAFGPSYSYSLVRLLYGKK--WSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSL 395 (521)
Q Consensus 318 ~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~k--w~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~~~~~~~ 395 (521)
..++.....+..........+++++.++ +++ =.+- +..++++.+...|.-.++...++.+.+.+|..+.. ..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~i~~lF-t~d~~v~~~-~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~----~~ 386 (441)
T PRK10367 313 AACRQSGIVALLFSLVYALAGEHIIALL-TSLPQIQQL-ADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMR----NS 386 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHH----HH
Confidence 7888887777766666666777888865 332 0010 12356665554332223334444566666653211 22
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009985 396 LVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYF 441 (521)
Q Consensus 396 ~~~s~i~i~~~~~l~~~~G~~G~i~a~~i~~~~ri~~~~~~i~~~~ 441 (521)
...+.+-.....+..+.+|..|+-++..+...+|........++-+
T Consensus 387 ~~~~~~~~~~~~~~~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~~ 432 (441)
T PRK10367 387 MAVAAAGFALTLLTLPWLGNHGLWLALTVFLALRGLSLAAIWRRHW 432 (441)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222223345679999999988888888777655444333
No 18
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.30 E-value=2.2e-07 Score=99.98 Aligned_cols=404 Identities=8% Similarity=-0.050 Sum_probs=231.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHhHHHHHHHH---hcccccCCCccchhh
Q 009985 11 SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRAC---MRADIKCDGASREEN 87 (521)
Q Consensus 11 ~~~~~~~w~~~~q~~~r~i~Fi~~~iLaRlLsP~~fGlva~~l~~~~~~~~~l~~~g~~~Al---ir~~~~~~~~~~~~~ 87 (521)
+..+-+.=.+++++.....+++-+.++.| +++++..-+++...+... ...+. .|+..+. +-+....++. ++
T Consensus 30 ~il~la~P~~~~~~~~~~~~~vd~~~vg~-lG~~alAA~~i~~~i~~~-~~~~~-~gl~~g~~~lvsq~~Ga~~~---~~ 103 (478)
T PRK10189 30 EITPLAVPIFIENLCVLLMGVLSTFLVSW-LGKEAMAGVGLADSFNMV-IMAFF-AAIDLGTTVVVAFSLGKRDR---RR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHhcCCCH---HH
Confidence 34444455677788888888888888887 688887766664333221 11111 3333332 2222111111 02
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCch-----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhh
Q 009985 88 AAKLL-KVAWLTLPLGIFITIGACFFVLWWQGLSY--SNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRL 159 (521)
Q Consensus 88 ~~~~~-n~~~~~i~~g~~~~~~~~~~~~~~~~~~~--~~~y-----~~~~~v~~l~~ii~~l~~p~~~~~q~~l~f~~~~ 159 (521)
.++.. ...++++.+++.+.++...........+. +|+. ..-+++..++.+...+.......+|..-|-+.-.
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 33332 23334444444444333222111111121 2332 1456777777788777777777777777777777
Q ss_pred HHHHHHHHHhHHHHHHHHhhc---ccchhH----HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccc---CCccc
Q 009985 160 VVETVATFSRCFTMCILIVKQ---YEMEKG----IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRL---GNMMS 229 (521)
Q Consensus 160 ~~~~~a~~~~~~~~i~l~~~~---~~~~~v----~a~~~~ql~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~---~~~~~ 229 (521)
.++..+.+++......+.... ++ +|+ |+.+++|.+..++. .++.+.+ + +....++.+. ..+..
T Consensus 184 ~i~~~~~~~ni~l~~~li~g~~~~~~-lGv~Gaa~At~is~~~~~~~~--~~~~~~~-~---~~~~~~~~~~~~~~~~~~ 256 (478)
T PRK10189 184 LINGGMNILNIIISSILIYGLFSWQG-LGFVGAGLGLTISRYIGAVAI--IWVLMIG-F---NPALRISLKSYFKPLNFA 256 (478)
T ss_pred HHHHHHHHHHHHHhHHHHhcCCCCCc-cchHHHHHHHHHHHHHHHHHH--HHHHHhc-c---CccceeeeccccccCCHH
Confidence 777666666655555443221 22 344 55566665543332 1221111 0 0011111100 01222
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhh
Q 009985 230 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS 309 (521)
Q Consensus 230 ~~k~l~~f~~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~ 309 (521)
..|++++.|.|...+.+...+..-.-..+++++ +.+.+.-|+.+.++.++.. .....+.+..-|.-++..-.+ |.
T Consensus 257 ~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~-G~~~~Aa~~I~~~i~~~~~-~~~~gi~~A~~~lvg~~~Ga~---~~ 331 (478)
T PRK10189 257 IIWEVMGIGIPASIESVLFNGGKLLTQMFVAGM-GTSVIAGNFIAFSIAALIN-LPGNALGSASTIITGTRLGKG---QI 331 (478)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCC---CH
Confidence 358899999998877666665554444555544 5678888999999987754 456678888888888877554 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHH
Q 009985 310 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK 389 (521)
Q Consensus 310 ~~l~~~~~~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~kw~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~ 389 (521)
++.++..+..++....++..+.+.....+++++.++-.|.=.-..+..++.+.+.+.|+.+++.+....+.+.|+++.-.
T Consensus 332 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~ 411 (478)
T PRK10189 332 AQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAM 411 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHH
Confidence 56667777777777777766666666677788876533210000023478888889999999988888899999987766
Q ss_pred HhhhHHHHHHHHHHHHHHHHHH--hhchHHHHHHHHHHHHHHHHHHH
Q 009985 390 RSNDSLLVFSVIYIVMNVILIQ--SAGSVGLILANSLNMILRIIYSA 434 (521)
Q Consensus 390 ~~~~~~~~~s~i~i~~~~~l~~--~~G~~G~i~a~~i~~~~ri~~~~ 434 (521)
..+.... -++.+...+++.. .+|..|+-++..+...++.....
T Consensus 412 ~i~~~~~--~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~ 456 (478)
T PRK10189 412 WVSMLGM--WGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFY 456 (478)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4432111 1233344444432 47999999998888887766543
No 19
>PRK01766 multidrug efflux protein; Reviewed
Probab=98.99 E-value=3.4e-08 Score=105.58 Aligned_cols=200 Identities=13% Similarity=0.110 Sum_probs=153.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhhH
Q 009985 231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 310 (521)
Q Consensus 231 ~k~l~~f~~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~ 310 (521)
.|++++++.|...+++..++.+..|..++|++ +.++++-++.+.++..... .+...+....-|..|+...++ |.+
T Consensus 11 ~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~-g~~~laa~~~~~~~~~~~~-~~~~g~~~a~~~~vs~~~g~~---~~~ 85 (456)
T PRK01766 11 ARQLLALALPILLAQVAQTAMGFVDTVMAGGV-SATDLAAVAIGTSIWLPVI-LFGHGLLLALTPIVAQLNGAG---RRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCC---ChH
Confidence 58999999999999999999999999999995 6778888999888754433 456677888899999987654 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHH
Q 009985 311 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKR 390 (521)
Q Consensus 311 ~l~~~~~~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~kw~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~~ 390 (521)
+.++.++..++....++.++.+.....+++++.++..|+=....+..+++++++..|...++.....++++.|+++....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 66777888888888888888887788888988876544211111235888988899999999999999999999988665
Q ss_pred hhhHHHHHHHHHHHHHHHHH------HhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 009985 391 SNDSLLVFSVIYIVMNVILI------QSAGSVGLILANSLNMILRIIYSAIFIK 438 (521)
Q Consensus 391 ~~~~~~~~s~i~i~~~~~l~------~~~G~~G~i~a~~i~~~~ri~~~~~~i~ 438 (521)
.+ .+..++++..++.++ +.+|..|..+|..++..+.......+++
T Consensus 166 ~~---~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~ 216 (456)
T PRK01766 166 IG---FLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIK 216 (456)
T ss_pred HH---HHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 44 333456777777776 3478889988877777666555554443
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=98.92 E-value=1.3e-07 Score=101.18 Aligned_cols=202 Identities=11% Similarity=0.031 Sum_probs=157.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhh
Q 009985 230 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS 309 (521)
Q Consensus 230 ~~k~l~~f~~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~ 309 (521)
..|+.++.+.|...++++..+++=.|++++|++.+.++++.|+.++++-.+.. .+..-+....-+..++...++ |.
T Consensus 10 ~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~-~~~~~~~~g~~~lvsq~~Ga~---~~ 85 (453)
T PRK09575 10 IYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIIL-GIGLMVGMGTGSLLSIKRGEG---DL 85 (453)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH-HHHHHHhccHHHHHHHHhcCC---CH
Confidence 45999999999999999999999999999999989999999999998877655 344455555667778877554 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHH
Q 009985 310 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK 389 (521)
Q Consensus 310 ~~l~~~~~~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~kw~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~ 389 (521)
|+.++..+..+.+...+++++.......+++++.++.+|.=.....-++++++++..|+..++...+.++++.|+++.-.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 56777888889999989988888888899999987643321111123589999998999988888888899999987655
Q ss_pred HhhhHHHHHHHHHHHHHHHHHH--hhchHHHHHHHHHHHHHHHHHHHHHHH
Q 009985 390 RSNDSLLVFSVIYIVMNVILIQ--SAGSVGLILANSLNMILRIIYSAIFIK 438 (521)
Q Consensus 390 ~~~~~~~~~s~i~i~~~~~l~~--~~G~~G~i~a~~i~~~~ri~~~~~~i~ 438 (521)
.. ..+..++++.++++++. .+|..|..+|..++..+.......++.
T Consensus 166 ~~---~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~ 213 (453)
T PRK09575 166 GL---MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFF 213 (453)
T ss_pred HH---HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 33445778888888876 479999999999998887777665543
No 21
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=98.87 E-value=3e-07 Score=97.90 Aligned_cols=200 Identities=18% Similarity=0.182 Sum_probs=154.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhhH
Q 009985 231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 310 (521)
Q Consensus 231 ~k~l~~f~~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~ 310 (521)
.|++++.+.|...++++..+.+=.|.+++|++.+.++++-++.+.++.+... .+..-+....-+.-++..-++ |.|
T Consensus 8 ~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~-~~~~~~~~g~~~lvsq~~Ga~---~~~ 83 (441)
T PRK10367 8 DKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLF-MLLLFLRMSTTGLTAQAFGAK---NPQ 83 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCC---CHH
Confidence 4899999999999999999999999999999878878988999988877654 444456666777888876554 445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCC-CCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHH
Q 009985 311 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKK-WSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK 389 (521)
Q Consensus 311 ~l~~~~~~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~k-w~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~ 389 (521)
+.++..+..+.+...++.+...++....++++.++..|. =.+- +-++++++++..|...++....+++.+.|+++.-.
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~-a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 162 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQ-ARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPV 162 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 677778888888888888887777777888877654332 1111 23599999999999999999999999999997654
Q ss_pred HhhhHHHHHHHHHHHHHHHHHH--hhchHHHHHHHHHHHHHHHHHHHHHHH
Q 009985 390 RSNDSLLVFSVIYIVMNVILIQ--SAGSVGLILANSLNMILRIIYSAIFIK 438 (521)
Q Consensus 390 ~~~~~~~~~s~i~i~~~~~l~~--~~G~~G~i~a~~i~~~~ri~~~~~~i~ 438 (521)
. .+.+...++++++++++. .+|..|..+|..++..+.......+..
T Consensus 163 ~---~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~ 210 (441)
T PRK10367 163 I---LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVR 210 (441)
T ss_pred H---HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 334455778889998876 469999999988887776655544443
No 22
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=98.86 E-value=2.8e-07 Score=98.44 Aligned_cols=202 Identities=20% Similarity=0.218 Sum_probs=163.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhh
Q 009985 230 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS 309 (521)
Q Consensus 230 ~~k~l~~f~~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~ 309 (521)
..|++++++.|+..++++..+++-.|.+++|++. +++++-=+.++.+-.++. .++.-+.-..-+..|+..-++ |.
T Consensus 15 ~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~-~~alaav~la~~i~~~~~-~~~~gl~~g~~~liaq~~Ga~---~~ 89 (455)
T COG0534 15 ILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG-AEALAAVGLANPIFFLII-AIFIGLGTGTTVLVAQAIGAG---DR 89 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHcCC---ch
Confidence 4599999999999999999999999999999999 777777777777766655 455567777788888887544 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHH
Q 009985 310 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK 389 (521)
Q Consensus 310 ~~l~~~~~~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~kw~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~ 389 (521)
++.++..+..+-....+++++.......+++++.++.+++=....+-.++++.++-.|.+.++...++++.+.|+++.-.
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 66778888888888888988888888999999999886431222234699999999999999999999999999997644
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHh----hchHHHHHHHHHHHHHHHHHHHHHHHH
Q 009985 390 RSNDSLLVFSVIYIVMNVILIQS----AGSVGLILANSLNMILRIIYSAIFIKH 439 (521)
Q Consensus 390 ~~~~~~~~~s~i~i~~~~~l~~~----~G~~G~i~a~~i~~~~ri~~~~~~i~~ 439 (521)
..+.+..++|++++++++.. +|..|..+|.+++..+-......++.+
T Consensus 170 ---~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~ 220 (455)
T COG0534 170 ---YILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLR 220 (455)
T ss_pred ---HHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 24566778999999999975 789999999998887777666666643
No 23
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=98.84 E-value=2.8e-07 Score=94.28 Aligned_cols=191 Identities=21% Similarity=0.240 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhhHHHHHHHHHH
Q 009985 240 LFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEA 319 (521)
Q Consensus 240 ~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~~~ 319 (521)
|++.+++..++....|+++++++ +.++.|.|+.+.++..+ .+.+...+.+...|..++...++ |.|+.++..+..
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~a~~i~~~-~~~~~~~i~~~~~~~~s~~~g~~---~~~~~~~~~~~~ 75 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHL-GPVDLAAVSLGSSVFMF-LFSILMGLGTATTALVAQAVGAG---NYQRLGRQAQQS 75 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHH-HHHHHHHHHHhHHHHHHHHHCCC---ChHHHHHHHHHH
Confidence 46778999999999999999995 57889999999888664 44778899999999999987544 334566778888
Q ss_pred HHHHHHHHHHHHHhcccchHHHHHHHhcC-CCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHhhhHHHHH
Q 009985 320 LKLVLLIGLVFMAFGPSYSYSLVRLLYGK-KWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVF 398 (521)
Q Consensus 320 l~~~~~l~~~~~~~~~~~a~~li~ll~g~-kw~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~~~~~~~~~~ 398 (521)
++....++.++..+....++++..++..+ .-.+. +..+++++++..|+..++....+.+++.++.+.....+. +.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i---~~ 151 (342)
T TIGR00797 76 LLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAEL-AQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITL---IG 151 (342)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH---HH
Confidence 88888888888888888899998765422 11111 234889999999999999888889999999877664442 33
Q ss_pred HHHHHHHHHHHHH-hhc---hHHHHHHHHHHHHHHHHHHHHHHHH
Q 009985 399 SVIYIVMNVILIQ-SAG---SVGLILANSLNMILRIIYSAIFIKH 439 (521)
Q Consensus 399 s~i~i~~~~~l~~-~~G---~~G~i~a~~i~~~~ri~~~~~~i~~ 439 (521)
.++++..++.++. .+| ..|..++..+...+.......++.+
T Consensus 152 ~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 152 NVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666665 444 8999999888877776666666554
No 24
>PRK10189 MATE family multidrug exporter; Provisional
Probab=98.77 E-value=6.2e-07 Score=96.50 Aligned_cols=198 Identities=14% Similarity=0.173 Sum_probs=152.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhh
Q 009985 230 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS 309 (521)
Q Consensus 230 ~~k~l~~f~~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~ 309 (521)
+.|++++.+.|...++++..+.+-.|..++|+ .+.++++-++.+.++..+.. .+..-+....-+..++..-.+ |.
T Consensus 27 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~-lG~~alAA~~i~~~i~~~~~-~~~~gl~~g~~~lvsq~~Ga~---~~ 101 (478)
T PRK10189 27 FWREITPLAVPIFIENLCVLLMGVLSTFLVSW-LGKEAMAGVGLADSFNMVIM-AFFAAIDLGTTVVVAFSLGKR---DR 101 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCC---CH
Confidence 46899999999999999999999999999998 57789999999999976544 555567778888888877555 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhc-C--CCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHH
Q 009985 310 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYG-K--KWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATED 386 (521)
Q Consensus 310 ~~l~~~~~~~l~~~~~l~~~~~~~~~~~a~~li~ll~g-~--kw~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~ 386 (521)
++.++..+..+.+...+++++.......+++++.++.+ + +=.+- +-+++++.++..|...++...++++++.|+++
T Consensus 102 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~-a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~ 180 (478)
T PRK10189 102 RRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKAL-ALTYLELTVWSYPAAAITLIGSGALRGAGNTK 180 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH
Confidence 56667777778888778887777777788899987752 2 21111 23588999999999999999999999999997
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHH------hhchHHHHHHHHHHHHHHHHHHHHH
Q 009985 387 QLKRSNDSLLVFSVIYIVMNVILIQ------SAGSVGLILANSLNMILRIIYSAIF 436 (521)
Q Consensus 387 ~l~~~~~~~~~~s~i~i~~~~~l~~------~~G~~G~i~a~~i~~~~ri~~~~~~ 436 (521)
.-...+ .+...+++.+++.++. .+|..|..+|..+...+......++
T Consensus 181 ~~~~i~---~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~ 233 (478)
T PRK10189 181 IPLLIN---GGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWV 233 (478)
T ss_pred HhHHHH---HHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 755433 3344667778887763 4699999999888777665554433
No 25
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=98.63 E-value=3e-06 Score=90.97 Aligned_cols=189 Identities=17% Similarity=0.078 Sum_probs=143.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhhH
Q 009985 231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 310 (521)
Q Consensus 231 ~k~l~~f~~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~ 310 (521)
.|++++.+.|...+++...+.+-.|.+++|++ +.++++-++.+.++-+... .+...+.+..-|..++..-++ |.|
T Consensus 9 ~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~l-g~~alAa~~i~~~i~~~~~-~~~~gl~~~~~~i~aq~~Ga~---~~~ 83 (464)
T PRK00187 9 LKAILRLAGPLIASQLAHMLMVFTDTLMMGRL-GPEALAGGGLGAASYSFVS-IFCVGVIAAVGTLVAIRHGAG---DIE 83 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCC---Chh
Confidence 58999999999999999999999999999994 7889999999999877655 445667777888888887554 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCCCC-CchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHH
Q 009985 311 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSD-GEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK 389 (521)
Q Consensus 311 ~l~~~~~~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~kw~~-~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~ 389 (521)
+.++.++..+.+...++.+..+... .+++++.++ |.+=+. ..+-.+++++++..|...++.....++++.|+++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~-~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 161 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLF-GQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVM 161 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 6777788788888777777666544 578888765 431111 0123588999988999999999999999999997654
Q ss_pred HhhhHHHHHHHHHHHHHHHHHH------hhchHHHHHHHHHHHHHH
Q 009985 390 RSNDSLLVFSVIYIVMNVILIQ------SAGSVGLILANSLNMILR 429 (521)
Q Consensus 390 ~~~~~~~~~s~i~i~~~~~l~~------~~G~~G~i~a~~i~~~~r 429 (521)
. ...+..++++..++.++. .+|..|..+|..+.....
T Consensus 162 ~---~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~ 204 (464)
T PRK00187 162 V---ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGM 204 (464)
T ss_pred H---HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHH
Confidence 3 334455678888888773 368899999987654433
No 26
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=98.50 E-value=0.00012 Score=79.19 Aligned_cols=197 Identities=12% Similarity=0.158 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccc-hhHHHHHhhhhHHHHHHH-hhhhHhhHHHHHHHhcCCCchhhHH
Q 009985 234 LANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQ-AVYGLVDKLGSLVVRMVF-LPFEESSYATFARSASGQYPQKSKK 311 (521)
Q Consensus 234 l~~f~~~l~~~si~~~llt~~d~liig~~~~~~~~-G~Y~~a~~l~sl~~~~~~-~pi~~~~~p~fs~~~~~~~~~~~~~ 311 (521)
+.+-...++..+++..+++=.|++++++++++++. |.|+.+..+..+....+. ..+..+.-|...+..+++ |+
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~-----~~ 76 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE-----KE 76 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-----hH
Confidence 34556678889999999999999999999999999 999999998876654444 346666667665544221 23
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhcccchHHHHHHHhcCCCCCCc---hhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHH
Q 009985 312 IGNSLAEALKLVLLIG-LVFMAFGPSYSYSLVRLLYGKKWSDGE---ASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQ 387 (521)
Q Consensus 312 l~~~~~~~l~~~~~l~-~~~~~~~~~~a~~li~ll~g~kw~~~~---~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~ 387 (521)
.++.+...+.....++ +.....+...++++..++ ++...+.. +.++++++++..|+..++...++++++.++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (502)
T TIGR01695 77 ARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLL-APGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFI 155 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHH
Confidence 3334444333333333 233344455667777754 32222221 235899999999999999999999999999877
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhchHHHH--HHHHHHHHHHHHHHHHHHHH
Q 009985 388 LKRSNDSLLVFSVIYIVMNVILIQSAGSVGLI--LANSLNMILRIIYSAIFIKH 439 (521)
Q Consensus 388 l~~~~~~~~~~s~i~i~~~~~l~~~~G~~G~i--~a~~i~~~~ri~~~~~~i~~ 439 (521)
....+.. ..++.+.....+...+|..|++ ++.++...+...+...+..+
T Consensus 156 ~~~~~i~---~~i~~i~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~ 206 (502)
T TIGR01695 156 PSFSPIL---FNIGVILSLLFFDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRK 206 (502)
T ss_pred HHHHHHH---HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6544432 2333333333444568888888 88888877766666555433
No 27
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=98.41 E-value=3e-05 Score=83.40 Aligned_cols=192 Identities=13% Similarity=0.124 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhhHHHHHH
Q 009985 236 NMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNS 315 (521)
Q Consensus 236 ~f~~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~ 315 (521)
+-+.+++.++++..+.+=.|+.++++..++++.|.|+.+..+-++.......-+....-+..|+...++ |+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~---~~~~~~~~ 79 (488)
T TIGR02900 3 KGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKN---DRKNIKKI 79 (488)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcc---chhhHHHH
Confidence 345688999999999999999999999999999999999998777664444467777777777765433 34556666
Q ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHhhhHH
Q 009985 316 LAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSL 395 (521)
Q Consensus 316 ~~~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~kw~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~~~~~~~ 395 (521)
++....+...++.++.......++++...++++. + ....+++++...|+..++...++++++.++.+.....+...
T Consensus 80 ~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~--~--~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 155 (488)
T TIGR02900 80 LKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDE--R--SLYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIE 155 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCh--h--HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHH
Confidence 7766666666666666555566667666554432 1 12367888888899999999999999999987766544333
Q ss_pred HHHHHHH-HHHHHHHH---HhhchHHHHHHHHHHHHHHHHHHH
Q 009985 396 LVFSVIY-IVMNVILI---QSAGSVGLILANSLNMILRIIYSA 434 (521)
Q Consensus 396 ~~~s~i~-i~~~~~l~---~~~G~~G~i~a~~i~~~~ri~~~~ 434 (521)
.+..+.. ......+. ...|..|..+++.+...+...+..
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~ 198 (488)
T TIGR02900 156 QIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLY 198 (488)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332211 11111111 235666776666665544444443
No 28
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.41 E-value=1e-05 Score=72.12 Aligned_cols=141 Identities=16% Similarity=0.220 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHhhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Q 009985 358 ALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFI 437 (521)
Q Consensus 358 il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~~~~~~~~~~s~i~i~~~~~l~~~~G~~G~i~a~~i~~~~ri~~~~~~i 437 (521)
++|++|+...++.++....+.+++.++++...+.+ .+..++++..++.+++++|..|.++|..+..........+..
T Consensus 1 il~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~---~~~~~v~i~~~~~li~~~G~~Gaa~a~~i~~~~~~~~~~~~~ 77 (146)
T PF14667_consen 1 ILQILALAIIFMGLSQPLGSILQAMGKTKWPFIIT---LIGAIVNIILNYILIPRFGIYGAAIATAISEIVSFILNLWYV 77 (146)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888888899999998877554 566778889999999999999999999999999888888888
Q ss_pred HHHhcCCCcccccccCCChhHHHHHHHHHHHhhhhhhh--c-cchhhHHHHHHHHHHHHHHHHHHHHH
Q 009985 438 KHYFQGSSSFSFRSSLPSGWPILLVSGVITLFSERIFL--D-RQDFWATFLIHFSVGLTCFCISSIVI 502 (521)
Q Consensus 438 ~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~g~~~~~~~~~~~ 502 (521)
++.++-+ .+..++..+....+..++.+.......... + +.+.+..+...+.+|++.|......+
T Consensus 78 ~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~y~~~~~~~ 144 (146)
T PF14667_consen 78 RKKIGIK-INWRRSLIKPILASIVMAIVLYILNSLLPNIFPSRLSSLLQLLIGIIIGGIVYLLLLLLL 144 (146)
T ss_pred HHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877442 333345555555555554444433332210 0 12455667777888888887776654
No 29
>PRK15099 O-antigen translocase; Provisional
Probab=97.93 E-value=0.00099 Score=70.32 Aligned_cols=191 Identities=15% Similarity=0.065 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhhHHHHH
Q 009985 235 ANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGN 314 (521)
Q Consensus 235 ~~f~~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~ 314 (521)
.+-+.+.....+++.+.+=.-.-+++++.++++.|.++....+.++.......-+.+..-...++. + +|+++.++
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~---~~~~~~~~ 78 (416)
T PRK15099 4 AKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--H---DQPQQLRA 78 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--C---CCHHHHHH
Confidence 344556677777888777788889999999999999999998877666554555555555555544 2 23345556
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHhhhH
Q 009985 315 SLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDS 394 (521)
Q Consensus 315 ~~~~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~kw~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~~~~~~ 394 (521)
.....+.+....+..+...+...++++...++++. + ...++.+.++..+...++...++.+++.++++.-.. .
T Consensus 79 ~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~---~ 151 (416)
T PRK15099 79 VVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHT--D--YQGVVRAVALIQMGIAWANLLLAILKGFRDAAGNAL---S 151 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 66666666666666666666677788887776554 1 233566666555566666667777777666654332 2
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Q 009985 395 LLVFSVIYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFI 437 (521)
Q Consensus 395 ~~~~s~i~i~~~~~l~~~~G~~G~i~a~~i~~~~ri~~~~~~i 437 (521)
..+...+++...+......|..|.++|..+...+-..+..+++
T Consensus 152 ~~~~~~~~i~l~i~~~~~~Gv~Ga~iat~i~~~i~~~~~~~~~ 194 (416)
T PRK15099 152 LIVGSLIGVAAYYLCYRLGGYEGALLGLALVPALVVLPAGIML 194 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 2333344443322222234999999998887766555544444
No 30
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=97.89 E-value=0.0074 Score=64.58 Aligned_cols=172 Identities=15% Similarity=0.228 Sum_probs=113.4
Q ss_pred hhcCC-ccchhHHHHHhhhhHHHHHHH-hhhhHhhHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 009985 261 WLDTP-YNQAVYGLVDKLGSLVVRMVF-LPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYS 338 (521)
Q Consensus 261 ~~~~~-~~~G~Y~~a~~l~sl~~~~~~-~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~~~l~~~~~l~~~~~~~~~~~a 338 (521)
+.+|. ++.--|..|.++...+.+.+. .++..+.-|.+++.. ++++|+ .++-.+..+.....+++.+...+...+
T Consensus 3 ~~fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~---~~~f~~~~~~~~~~~~~~l~~l~~lfa 78 (451)
T PF03023_consen 3 YFFGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEE---ARRFISTLLTILLIISLLLTLLGILFA 78 (451)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443 445579999999999987776 589999999999998 443333 334455566666666777777777888
Q ss_pred HHHHHHHhcCCCCCCc---hhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc-
Q 009985 339 YSLVRLLYGKKWSDGE---ASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAG- 414 (521)
Q Consensus 339 ~~li~ll~g~kw~~~~---~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~~~~~~~~~~s~i~i~~~~~l~~~~G- 414 (521)
++++.++. +...+.. +...+++..++.++..++++..+.+++.++-..-.-. -.+..+..+....++....|
T Consensus 79 ~~iv~~la-~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~---~l~~N~~~I~~~~~~~~~~~~ 154 (451)
T PF03023_consen 79 PPIVRLLA-PGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALS---PLLFNLSIILSLLLLSNSWGQ 154 (451)
T ss_pred HHHHHHHC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHH---HHHHHHHHHHHHHHHHHhcCc
Confidence 89998765 4443332 2347788888999999999998888887765332211 12222222222333344567
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009985 415 --SVGLILANSLNMILRIIYSAIFIKHY 440 (521)
Q Consensus 415 --~~G~i~a~~i~~~~ri~~~~~~i~~~ 440 (521)
..++.++..+...++........++.
T Consensus 155 ~~i~~la~g~~~g~~~~~l~~l~~~~~~ 182 (451)
T PF03023_consen 155 ENIYALAWGVLIGAIIQFLIQLPYLRRF 182 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 77788888887777766666655543
No 31
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=97.74 E-value=1.7e-05 Score=71.84 Aligned_cols=145 Identities=15% Similarity=0.151 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhhHHHHHHHHHH
Q 009985 240 LFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEA 319 (521)
Q Consensus 240 ~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~~~ 319 (521)
|...++++..+....|..+++++ ++++++.|+.+.++.++.. .+...+.+..-+..++...+++ .++.++..+..
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~i~~~~~~~~~-~~~~g~~~a~~~~~s~~~G~~~---~~~~~~~~~~~ 75 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRL-GPEALAAYGIASSIFSILF-MLIFGLATALQILISQNIGAGD---YKRAKKVVRQG 75 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCC-TTCCCCHCCHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCSSS---TTTCCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHh-hhcccccccccceeeccccccc---ccccccccccc
Confidence 56788999999999999999999 9999999999999998776 5777889999999888765543 34566678888
Q ss_pred HHHHHHHHHHHHHhcccchHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHH
Q 009985 320 LKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK 389 (521)
Q Consensus 320 l~~~~~l~~~~~~~~~~~a~~li~ll~g~kw~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~ 389 (521)
+.+...++.++.++....++++..++..|+=....+..++++.++..|+..++...++++++.|+++...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 145 (162)
T PF01554_consen 76 LLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAM 145 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCH
T ss_pred cccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHH
Confidence 8888888888888777777787776543331111134578888888888888888888888999886654
No 32
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.60 E-value=0.013 Score=57.14 Aligned_cols=188 Identities=13% Similarity=0.170 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhhHHHHHH
Q 009985 236 NMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNS 315 (521)
Q Consensus 236 ~f~~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~ 315 (521)
+-..+....+++..+..=.-..++.|..++++.|.|+.+..+.++..-.....+++...-..++..++ +++.+..
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~-----~~~~~~~ 77 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK-----KELRSAY 77 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-----HHHHHHH
Confidence 33456677778888888888999999999999999999999999887555667777776666655421 1222222
Q ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCCCCCchhHHHHHHHH-HHHHHHhhhhHHHHHHHhCCHHHHHHhhhH
Q 009985 316 LAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCL-YVVVLAMNGTSEAFLHAVATEDQLKRSNDS 394 (521)
Q Consensus 316 ~~~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~kw~~~~~~~il~~~~~-~~~~~~~ng~~eaf~~a~~~~~~l~~~~~~ 394 (521)
....+ ....++..+..... .+......+++.. ...+++. ..+....+...+.+.++..+.+.....+
T Consensus 78 ~~~~~-~~~~~~~~i~~~~~----~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 145 (273)
T PF01943_consen 78 FSSVL-FLLLIFSLIFLLIL----LIASFFGNPSLSL-----ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISN-- 145 (273)
T ss_pred HHHHH-HHHHHHHHHHHHHH----HHHHHcCCchHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 22222 22222222222222 1222222233222 2222222 2245566666666666554433333222
Q ss_pred HHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009985 395 LLVFSVIYIVMNVILIQS-AGSVGLILANSLNMILRIIYSAIFIKHYF 441 (521)
Q Consensus 395 ~~~~s~i~i~~~~~l~~~-~G~~G~i~a~~i~~~~ri~~~~~~i~~~~ 441 (521)
.............+... .+..+.+.+..+...+.........++..
T Consensus 146 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (273)
T PF01943_consen 146 -IISSLLSLLLILLLLFLGSSLWGFLLGLVISSLVSLIISLFYLRRKL 192 (273)
T ss_pred -HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333222222222 23678888888888887777777777654
No 33
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.37 E-value=0.026 Score=54.47 Aligned_cols=166 Identities=17% Similarity=0.209 Sum_probs=93.6
Q ss_pred hhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009985 255 EKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFG 334 (521)
Q Consensus 255 d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~~~l~~~~~l~~~~~~~~ 334 (521)
-..+++|..+++|.|.|+.+....++.........++...- .. + +|+++.++..+..+.....++.....+.
T Consensus 7 ~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~----~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (251)
T PF13440_consen 7 FLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR----SA-A---RDKQDIRSLLRFSLLVSLLLAVILAILA 78 (251)
T ss_pred HHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----hh-c---cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999998775544455444322 11 1 1223344444444333333333332222
Q ss_pred ccchHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc
Q 009985 335 PSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLVFSVIYIVMNVILIQSAG 414 (521)
Q Consensus 335 ~~~a~~li~ll~g~kw~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~~~~~~~~~~s~i~i~~~~~l~~~~G 414 (521)
+ .+...+++ .+...++.+.+...+...++......+.+.++.+.....+........+.....+... .+
T Consensus 79 ~-----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 147 (251)
T PF13440_consen 79 I-----LIAYFFGD----PELFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYLG--LN 147 (251)
T ss_pred H-----HHHHHhCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHH--hh
Confidence 2 12222322 1122256666667788888877777788888887766554333333322222222211 36
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 009985 415 SVGLILANSLNMILRIIYSAIFIKH 439 (521)
Q Consensus 415 ~~G~i~a~~i~~~~ri~~~~~~i~~ 439 (521)
..+..++.++...+...+.+...++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLRR 172 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6778888877777766666665543
No 34
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=97.24 E-value=0.37 Score=52.00 Aligned_cols=202 Identities=13% Similarity=0.123 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCC-ccchhHHHHHhhhhHHHHHHHhh-hhHhhHHHHHHHhcCCCchhh
Q 009985 232 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTP-YNQAVYGLVDKLGSLVVRMVFLP-FEESSYATFARSASGQYPQKS 309 (521)
Q Consensus 232 k~l~~f~~~l~~~si~~~llt~~d~liig~~~~~-~~~G~Y~~a~~l~sl~~~~~~~p-i~~~~~p~fs~~~~~~~~~~~ 309 (521)
+.+++-+......+++..++-=.-..++...+++ ...--|+.|+++..+.-|++... .+++.-|.|.+.++++.+++.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 5677777788888888888888888899999987 66778999999999988887664 477778999999865543333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCCCCCc---hhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHH
Q 009985 310 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE---ASTALRYYCLYVVVLAMNGTSEAFLHAVATED 386 (521)
Q Consensus 310 ~~l~~~~~~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~kw~~~~---~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~ 386 (521)
++.++ ......+.+.+.+...+...+|.+++.+.++.|.+.+ +....++..+|.++..+.....+.+++..+=
T Consensus 87 ~~f~~---~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F- 162 (518)
T COG0728 87 RFFSR---LVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRF- 162 (518)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCee-
Confidence 33322 2222444444445555566677888899999873322 1235577777888877766665555544432
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHh-hc-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 009985 387 QLKRSNDSLLVFSVIYIVMNVILIQS-AG-SVGLILANSLNMILRIIYSAIFIKH 439 (521)
Q Consensus 387 ~l~~~~~~~~~~s~i~i~~~~~l~~~-~G-~~G~i~a~~i~~~~ri~~~~~~i~~ 439 (521)
.-....-....+..+.....+.+. .+ ..++.++..+..+.-..+-....++
T Consensus 163 --~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~ 215 (518)
T COG0728 163 --FIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRK 215 (518)
T ss_pred --chhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111112222222222222322 23 3455555666665555555555544
No 35
>PRK10459 colanic acid exporter; Provisional
Probab=97.19 E-value=0.036 Score=59.75 Aligned_cols=181 Identities=13% Similarity=0.068 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhhHH
Q 009985 232 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK 311 (521)
Q Consensus 232 k~l~~f~~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~ 311 (521)
|+..+=..|....++...+..=.-..+++++.+++|.|.|+.+..+.++........++++. . +. ++ +++++
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i--~~-~~-~~~~~ 76 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI----I--QR-QD-ISHLQ 76 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH----H--hc-cc-CCHHH
Confidence 44555566778888888888888999999999999999999999998876655555555533 1 11 11 22233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHh
Q 009985 312 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRS 391 (521)
Q Consensus 312 l~~~~~~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~kw~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~~~ 391 (521)
....+ ......+..........++++ ..++++.- ....+++.++..++..++....+.++...+-+.....
T Consensus 77 ~~~~~----~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~ 147 (492)
T PRK10459 77 LSTLY----WLNVGLGIVVFVLVFLLSPLI-ADFYHNPE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKI 147 (492)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHH-HHHcCChh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHH
Confidence 33222 222233333223223333443 33454431 2236666666566655555444444444443333222
Q ss_pred hhHHHHHHHHHHHHHHHHH-HhhchHHHHHHHHHHHHHHHHH
Q 009985 392 NDSLLVFSVIYIVMNVILI-QSAGSVGLILANSLNMILRIIY 432 (521)
Q Consensus 392 ~~~~~~~s~i~i~~~~~l~-~~~G~~G~i~a~~i~~~~ri~~ 432 (521)
+ ....++.......+. ..+|..|+++++.+...+....
T Consensus 148 ~---~~~~i~~~~~~i~~~~~~~g~~~l~~~~~~~~~~~~l~ 186 (492)
T PRK10459 148 E---ISAVVAGFTFAVVSAFFWPGALAAILGYLVNSSVRTLL 186 (492)
T ss_pred H---HHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHH
Confidence 2 222222222222222 2468889999988877665443
No 36
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=95.59 E-value=1.1 Score=47.87 Aligned_cols=68 Identities=16% Similarity=0.086 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHH
Q 009985 232 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFAR 299 (521)
Q Consensus 232 k~l~~f~~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~ 299 (521)
++..+-..+....++.+.+..-.-..++++..++++.|.|+.+....++.......-+++..--.-++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~ 73 (480)
T COG2244 6 KKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAE 73 (480)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 56777777888899999999999999999999999999999999998887766544555544443333
No 37
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=94.11 E-value=1.4 Score=47.39 Aligned_cols=189 Identities=17% Similarity=0.094 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhhHH
Q 009985 232 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK 311 (521)
Q Consensus 232 k~l~~f~~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~ 311 (521)
|++++++.|.....+.++...-.+...+|+.-+. +++-.+.+++........+..-.....-+..++....++. +.
T Consensus 28 k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~l-eLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~---~~ 103 (473)
T KOG1347|consen 28 KELARLALPAILTFLAQPLLSLVSTAFAGHLGNL-ELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF---TA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhccccch-HHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc---ch
Confidence 8899999999999999999999999999999999 9999999998887755556656666666666666543322 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHh
Q 009985 312 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRS 391 (521)
Q Consensus 312 l~~~~~~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~kw~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~~~ 391 (521)
+....++..-.......|.... ..+++++...+..+.=....+..+.++...-.+-.+.+...+.|+++.+...-..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~-- 180 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL-- 180 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH--
Confidence 3333444444444445554433 3456777776554432222122222222222333333344444555333332222
Q ss_pred hhHHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHH
Q 009985 392 NDSLLVFSVIYIVMNVILIQS--AGSVGLILANSLNMIL 428 (521)
Q Consensus 392 ~~~~~~~s~i~i~~~~~l~~~--~G~~G~i~a~~i~~~~ 428 (521)
........+++.+++++... +|..|..++..++.-.
T Consensus 181 -~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~ 218 (473)
T KOG1347|consen 181 -VIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWL 218 (473)
T ss_pred -HHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHH
Confidence 23344556788899988865 5778888877776543
No 38
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=94.08 E-value=7.3 Score=39.19 Aligned_cols=163 Identities=9% Similarity=0.010 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHhHHHHHHHHhhc--ccch----hHHHHHHHHHHHHHHH
Q 009985 127 QAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQ--YEME----KGIVFALSQVAYAASL 200 (521)
Q Consensus 127 ~~~~v~~l~~ii~~l~~p~~~~~q~~l~f~~~~~~~~~a~~~~~~~~i~l~~~~--~~~~----~v~a~~~~ql~~~~~~ 200 (521)
....++.+-.++.++...+.-.+-|. +....+..+.++-++.-++.+...+.. +... ++.++..+..+-.-+.
T Consensus 130 ~a~l~L~llPfl~alr~~~qGILik~-r~s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v 208 (345)
T PF07260_consen 130 RAFLYLTLLPFLDALRWIHQGILIKH-RHSWIVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIV 208 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhc-cceeEeehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888877776454443 333333344444333333322222211 1111 3566666666665555
Q ss_pred HHHHHHHHHHhcccccCCccccc---cCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCC-----ccchhHH
Q 009985 201 FLGYWGYFLLFGAFKTSDLFPFR---LGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTP-----YNQAVYG 272 (521)
Q Consensus 201 ~i~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~k~l~~f~~~l~~~si~~~llt~~d~liig~~~~~-----~~~G~Y~ 272 (521)
.++||.-.. +..|.. ++++....+++++|.+|+......++..+-.-++.+.+-.+- +++.+-.
T Consensus 209 ~LGy~~~i~--------~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~ 280 (345)
T PF07260_consen 209 CLGYYQSIH--------DIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLT 280 (345)
T ss_pred HHHHHHHHh--------hhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhc
Confidence 667763221 122222 112222458999999999999999999999999999996653 3445544
Q ss_pred HHHhhhhHHHHHHHhhhhHhhHHHHHHH
Q 009985 273 LVDKLGSLVVRMVFLPFEESSYATFARS 300 (521)
Q Consensus 273 ~a~~l~sl~~~~~~~pi~~~~~p~fs~~ 300 (521)
..|-.|.++-.-+.. -++.+|.|-+.
T Consensus 281 ~~ypvgh~~y~w~~~--~r~~~paf~~~ 306 (345)
T PF07260_consen 281 ATYPVGHMPYGWLTE--LRAVYPAFDKN 306 (345)
T ss_pred cccCCCcCcchhHHh--HHhhCchhhcc
Confidence 445444443322221 13445555443
No 39
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=90.64 E-value=0.54 Score=42.02 Aligned_cols=140 Identities=15% Similarity=0.150 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHh---cccccCCC-ccchhhHHHHHHHH
Q 009985 20 LATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACM---RADIKCDG-ASREENAAKLLKVA 95 (521)
Q Consensus 20 ~~~q~~~r~i~Fi~~~iLaRlLsP~~fGlva~~l~~~~~~~~~l~~~g~~~Ali---r~~~~~~~-~~~~~~~~~~~n~~ 95 (521)
.+.++...+...+.+.++.|+ +|++.+..++...+.... +.--.|+..|.. .+....++ ++-++-.+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~i~~~~~~~~--~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~---~~~ 76 (162)
T PF01554_consen 3 ALMQLLQVLGFIIDTIFVGRL-GPEALAAYGIASSIFSIL--FMLIFGLATALQILISQNIGAGDYKRAKKVVR---QGL 76 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCC-TTCCCCHCCHHHHHHHHH--HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHH--hhhcccccccccceeecccccccccccccccc---ccc
Confidence 456777888888888888888 999999888855444332 223467776654 22211111 11111112 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCc-h----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHH
Q 009985 96 WLTLPLGIFITIGACFFVLWWQGLSYSNP-Y----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVA 165 (521)
Q Consensus 96 ~~~i~~g~~~~~~~~~~~~~~~~~~~~~~-y----~~~~~v~~l~~ii~~l~~p~~~~~q~~l~f~~~~~~~~~a 165 (521)
++.+..++++.++......+....+..++ . ...+++..+..++.++.+.....+|..-+.|.-...+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 151 (162)
T PF01554_consen 77 LLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIIS 151 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHH
T ss_pred ccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 45555565555554332211112222232 1 2456667777777766665555555555555444444433
No 40
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=57.30 E-value=1.3e+02 Score=25.95 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 009985 129 IFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFL 202 (521)
Q Consensus 129 ~~v~~l~~ii~~l~~p~~~~~q~~l~f~~~~~~~~~a~~~~~~~~i~l~~~~~~~~~v~a~~~~ql~~~~~~~i 202 (521)
+++.+++.++..+..+....+|..-|.|...+.+..+.+++.+....+. +. +|..+-+++..+...+.++
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li---~~-~G~~Gaa~a~~i~~~~~~~ 71 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI---PR-FGIYGAAIATAISEIVSFI 71 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH---HH-HHHhHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888888888888888888887776653 22 5666666666666555433
No 41
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=52.10 E-value=3.2e+02 Score=29.07 Aligned_cols=61 Identities=26% Similarity=0.292 Sum_probs=45.3
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHh
Q 009985 4 APVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLS 64 (521)
Q Consensus 4 ~~~~~~~~~~~~~~w~~~~q~~~r~i~Fi~~~iLaRlLsP~~fGlva~~l~~~~~~~~~l~ 64 (521)
.|.+.....-|+..+.++-=.++-+.=|+.-.+--+-+.|=.|+++|+++.+|+...+.++
T Consensus 286 ~Pvd~Y~~~~Ra~KYgiLFI~LTF~~fflfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlS 346 (430)
T PF06123_consen 286 EPVDHYQKSERAVKYGILFIGLTFLAFFLFELLSKLRIHPIQYLLVGLALVLFYLLLLSLS 346 (430)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777888888886555455544455555555558999999999999999988877776
No 42
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=37.04 E-value=4.4e+02 Score=27.40 Aligned_cols=61 Identities=21% Similarity=0.279 Sum_probs=39.4
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhChhhHHHHHHHHHHHHHHHHHHhH
Q 009985 4 APVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVR-HLTEADYAIYAVQFHLFVTCVLFLSR 65 (521)
Q Consensus 4 ~~~~~~~~~~~~~~w~~~~q~~~r~i~Fi~~~iLaR-lLsP~~fGlva~~l~~~~~~~~~l~~ 65 (521)
+|++-....-|+..+.+. -+.-..+.|.+.=.+.+ .+.|-.|+++|..+.+|+...+.+++
T Consensus 286 ~pvd~Yq~~~RA~kYaIl-fI~Ltf~afFifE~lt~~~~Hp~QY~LVGlsLv~FYLLLLaLsE 347 (443)
T COG4452 286 DPVDQYQLTDRATKYAIL-FIGLTFMAFFIFEVLTGQRLHPMQYLLVGLSLVMFYLLLLALSE 347 (443)
T ss_pred ccHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555566555433 33333344444444444 78999999999999999988777763
No 43
>PRK11715 inner membrane protein; Provisional
Probab=34.37 E-value=6e+02 Score=27.10 Aligned_cols=61 Identities=25% Similarity=0.332 Sum_probs=42.1
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHh
Q 009985 4 APVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLS 64 (521)
Q Consensus 4 ~~~~~~~~~~~~~~w~~~~q~~~r~i~Fi~~~iLaRlLsP~~fGlva~~l~~~~~~~~~l~ 64 (521)
.|.+.....-|+..+.++-=.++-..=|+.-.+=-+-+.|=.|+++|+++.+|+...+.++
T Consensus 292 ~PVd~Y~~~~RA~KYgiLFI~LTF~~fFlfE~~~~~~iHpiQYlLVGlAl~lFYLLLLSlS 352 (436)
T PRK11715 292 DPVDQYQKTERAVKYAILFIALTFAAFFLFELLKKLRIHPVQYLLVGLALVLFYLLLLSLS 352 (436)
T ss_pred ccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCceecHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777777777776544444433334444444447899999999999999988877776
No 44
>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=27.00 E-value=2.3e+02 Score=22.48 Aligned_cols=45 Identities=16% Similarity=0.025 Sum_probs=28.0
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHH
Q 009985 4 APVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAV 51 (521)
Q Consensus 4 ~~~~~~~~~~~~~~w~~~~q~~~r~i~Fi~~~iLaRlLsP~~fGlva~ 51 (521)
||+|+++++.- -..++-+..-++=.+...+=...++||-|+.++|
T Consensus 18 aPksIr~Tln~---i~~v~~~vlLivla~ls~~ki~q~P~Eifv~~~M 62 (81)
T PF11364_consen 18 APKSIRGTLNM---IGLVGLVVLLIVLAVLSFIKIFQLPPEIFVGLAM 62 (81)
T ss_pred CcHHHHhhhhH---HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 78888777522 1223333333444445555567899999998888
No 45
>COG1455 CelB Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]
Probab=24.86 E-value=3.6e+02 Score=28.67 Aligned_cols=39 Identities=10% Similarity=0.206 Sum_probs=22.4
Q ss_pred hhHhhHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 009985 289 FEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVF 330 (521)
Q Consensus 289 i~~~~~p~fs~~~~~~~~~~~~~l~~~~~~~l~~~~~l~~~~ 330 (521)
+||..-|...|+.+++ ..+.+|+.+-..+-+...=++.+
T Consensus 8 ~~~~~~p~a~Ki~~qr---hl~AiRDgfi~~mPl~i~gS~fl 46 (432)
T COG1455 8 LEKKLVPFAEKIGNQR---HLRAIRDGFIAAMPLTIVGSIFL 46 (432)
T ss_pred HHHhcccHHHHhccch---HHHHHHHHHHHHhHHHHHHHHHH
Confidence 6777888888876422 33455666655555554433333
No 46
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=22.75 E-value=1.2e+03 Score=26.87 Aligned_cols=54 Identities=17% Similarity=0.330 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----------CCcccccccCCChhHH
Q 009985 401 IYIVMNVILIQSAGSVGLILANSLNMILRIIYSAIFIKHYFQG-----------SSSFSFRSSLPSGWPI 459 (521)
Q Consensus 401 i~i~~~~~l~~~~G~~G~i~a~~i~~~~ri~~~~~~i~~~~~~-----------~~~~~l~~~~p~~~~~ 459 (521)
-+..+++++..-.|..|.-+...++..+ .....++..+ ....++..++|.....
T Consensus 551 SnFfi~~iilqgl~~~~~~LLqi~~Ll~-----~~vl~kf~~~TpR~k~nr~~~~~~f~~G~v~P~~~~l 615 (827)
T COG5594 551 SNFFISYIILQGLSGFPGTLLQIVPLLL-----SLVLGKFKDSTPRQKWNRLETPPSFQFGTVLPQPILL 615 (827)
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHH-----HHhhhhhcCCChHHHHhhccCCCccccccccchhHHH
Confidence 3445555555556667778888888766 4444555544 2345677888875443
No 47
>PRK09458 pspB phage shock protein B; Provisional
Probab=21.16 E-value=95 Score=24.28 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcccchHHHHHHHhcCCCCCCc
Q 009985 324 LLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE 354 (521)
Q Consensus 324 ~~l~~~~~~~~~~~a~~li~ll~g~kw~~~~ 354 (521)
.++..|+.+|...++|+-+.+=|..||..+.
T Consensus 4 ~fl~~PliiF~ifVaPiWL~LHY~sk~~~~~ 34 (75)
T PRK09458 4 LFLAIPLTIFVLFVAPIWLWLHYRSKRQGSQ 34 (75)
T ss_pred hHHHHhHHHHHHHHHHHHHHHhhcccccCCC
Confidence 4577888889889999999999999998764
Done!