Query 009985
Match_columns 521
No_of_seqs 185 out of 582
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 17:20:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009985.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009985hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.9 1.1E-22 3.6E-27 214.8 36.8 420 7-439 9-445 (460)
2 3mkt_A Multi antimicrobial ext 98.9 2.5E-09 8.4E-14 112.2 11.1 201 230-439 10-216 (460)
3 1s4x_A Integrin beta-3; cell a 11.5 1.3E+02 0.0045 21.9 2.3 31 487-517 9-39 (67)
4 2knc_B Integrin beta-3; transm 10.9 4.2E+02 0.014 19.8 5.0 29 489-517 23-51 (79)
5 3qnq_A PTS system, cellobiose- 9.3 1.3E+03 0.044 23.1 9.7 20 413-432 141-160 (442)
6 3twe_A Alpha4H; unknown functi 3.8 4.4E+02 0.015 14.8 1.3 13 505-517 8-20 (27)
7 2veb_A Protoglobin; hemoprotei 3.6 2E+03 0.068 19.1 7.1 72 249-322 88-180 (195)
8 3ogl_Q JAZ1 incomplete degron 3.6 5.7E+02 0.02 14.1 1.6 14 507-520 7-20 (21)
9 2lma_A THP5 peptide; CD4+, imm 3.6 2.6E+02 0.0087 15.7 0.2 9 40-48 15-23 (26)
10 2k9j_B Integrin beta-3; transm 3.2 9.5E+02 0.033 15.5 2.9 18 490-507 23-40 (43)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.93 E-value=1.1e-22 Score=214.82 Aligned_cols=420 Identities=13% Similarity=0.058 Sum_probs=294.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchh
Q 009985 7 DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREE 86 (521)
Q Consensus 7 ~~~~~~~~~~~w~~~~q~~~r~i~Fi~~~iLaRlLsP~~fGlva~~l~~~~~~~~~l~~~g~~~Alir~~~~~~~~~~~~ 86 (521)
+..++..+.+.+.+++++.+++.+++-+.+++| ++||++|.+++...+. .....+ ..|+..+..+.-.....+++++
T Consensus 9 ~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~-lg~~~~~~~~~~~~i~-~~~~~~-~~g~~~~~~~~is~~~g~~~~~ 85 (460)
T 3mkt_A 9 KEASNLIKLATPVLIASVAQTGMGFVDTIMAGG-VSAIDMAAVSIAASIW-LPSILF-GVGLLMALVPVVAQLNGAGRQH 85 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH-HTTTTSSHHHHHHHHH-HHHHHH-HHHHHHHHGGGCTTTTSSSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHcCCChh
Confidence 345677888899999999999999999999999 8999999999966553 333333 4788888765433221111111
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCch-----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhH
Q 009985 87 NAAKLL-KVAWLTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLV 160 (521)
Q Consensus 87 ~~~~~~-n~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~y-----~~~~~v~~l~~ii~~l~~p~~~~~q~~l~f~~~~~ 160 (521)
+.++.. +..++.+..++++.++ .....+.......++. ...+++++.+.++..+.......+|.+.++|....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (460)
T 3mkt_A 86 KIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV 164 (460)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 333333 2334445555554433 1211111111112221 13466777788888877777777888888888888
Q ss_pred HHHHHHHHhHHHHHHHHhh-c--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccccCCcccccHHHHHH
Q 009985 161 VETVATFSRCFTMCILIVK-Q--YEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANM 237 (521)
Q Consensus 161 ~~~~a~~~~~~~~i~l~~~-~--~~~~~v~a~~~~ql~~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~k~l~~f 237 (521)
.+..+.+++.+....++.. . ++ +|+.+.+++..+..++..+..+.+..++++.++....+.....+.+..|+++++
T Consensus 165 ~~~~~~~~~i~l~~~li~~~~~~p~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (460)
T 3mkt_A 165 IGFIGLLLNIPLNWIFVYGKFGAPE-LGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL 243 (460)
T ss_dssp HHHHHHHHHHHHHHHHHSCCTTCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcc-cchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence 8888888887777665422 1 13 677777777666665554444333332211110000011001122345899999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhhHHHHHHHH
Q 009985 238 CTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLA 317 (521)
Q Consensus 238 ~~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~ 317 (521)
+.|.+.+++..++.++.|+.+++++ +.++.|.|+.++++.+++. .+...+.++..|..++...++++| +.++.++
T Consensus 244 ~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~va~~~i~~~i~~~~~-~~~~~~~~a~~p~i~~~~g~~~~~---~~~~~~~ 318 (460)
T 3mkt_A 244 GFPVAAALFFEVTLFAVVALLVAPL-GSTVVAAHQVALNFSSLVF-MFPMSIGAAVSIRVGHKLGEQDTK---GAAIAAN 318 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTT-SSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHSSCCC---TTTTHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHH---HHHHHHH
Confidence 9999999999999999999999999 9999999999999999888 777799999999999987655433 4556678
Q ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHhhhHHHH
Q 009985 318 EALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLKRSNDSLLV 397 (521)
Q Consensus 318 ~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~kw~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~~~~~~~~~ 397 (521)
+.++....+++|+.++....+++++.++.+|+.....+.+++++++...++.+++...+..+++.|+++.....+ .+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~---~~ 395 (460)
T 3mkt_A 319 VGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRT---FI 395 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH---HH
Confidence 888999999999988888999999998887764322234599999999999999999999999999998766443 22
Q ss_pred HH-HHHHHHHHHHHHh-------hchHHHHHHHHHHHHHHHHHHHHHHHH
Q 009985 398 FS-VIYIVMNVILIQS-------AGSVGLILANSLNMILRIIYSAIFIKH 439 (521)
Q Consensus 398 ~s-~i~i~~~~~l~~~-------~G~~G~i~a~~i~~~~ri~~~~~~i~~ 439 (521)
.. ++++.+++++.+. +|..|+.+|..+...++.....+..++
T Consensus 396 ~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~ 445 (460)
T 3mkt_A 396 SYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYW 445 (460)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23 5678888888888 999999999999998876666544433
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=98.94 E-value=2.5e-09 Score=112.18 Aligned_cols=201 Identities=11% Similarity=0.082 Sum_probs=149.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHHHHhhhhHhhHHHHHHHhcCCCchhh
Q 009985 230 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS 309 (521)
Q Consensus 230 ~~k~l~~f~~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~~~~pi~~~~~p~fs~~~~~~~~~~~ 309 (521)
..|++++++.|++.+++...+++..|+.++|+ .++++.|.|+.+.++..+.. .+...+.....|..++...+++ .
T Consensus 10 ~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~-lg~~~~~~~~~~~~i~~~~~-~~~~g~~~~~~~~is~~~g~~~---~ 84 (460)
T 3mkt_A 10 EASNLIKLATPVLIASVAQTGMGFVDTIMAGG-VSAIDMAAVSIAASIWLPSI-LFGVGLLMALVPVVAQLNGAGR---Q 84 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH-HTTTTSSHHHHHHHHHHHHH-HHHHHHHHHHGGGCTTTTSSSS---T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCC---h
Confidence 35899999999999999999999999999999 89999999999999966544 5666788888888888754443 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHH
Q 009985 310 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAFLHAVATEDQLK 389 (521)
Q Consensus 310 ~~l~~~~~~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~kw~~~~~~~il~~~~~~~~~~~~ng~~eaf~~a~~~~~~l~ 389 (521)
++.++.++..+.....+++++.+. ...+++++..+.+++-....+..+++++++..|+..++...++++++.++.+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (460)
T 3mkt_A 85 HKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM 163 (460)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 445566777777777777776554 5566777765533321111123477888888889888888888888888886544
Q ss_pred HhhhHHHHHHHHHHHHHHHHHH------hhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 009985 390 RSNDSLLVFSVIYIVMNVILIQ------SAGSVGLILANSLNMILRIIYSAIFIKH 439 (521)
Q Consensus 390 ~~~~~~~~~s~i~i~~~~~l~~------~~G~~G~i~a~~i~~~~ri~~~~~~i~~ 439 (521)
. ...+..++++.++++++. .+|..|.++|..+...+.......+..+
T Consensus 164 ~---~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 216 (460)
T 3mkt_A 164 V---IGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVT 216 (460)
T ss_dssp H---HHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred H---HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 334555677888888875 4899999999999887776666665544
No 3
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=11.55 E-value=1.3e+02 Score=21.92 Aligned_cols=31 Identities=19% Similarity=-0.008 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 009985 487 HFSVGLTCFCISSIVIYHRERSFIYKIIRFR 517 (521)
Q Consensus 487 ~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~ 517 (521)
|.++|++++++.=+++...||.+..++-+.+
T Consensus 9 ~~liGl~lLliwKll~~i~DrrEyakFE~Er 39 (67)
T 1s4x_A 9 HSSGLVPRGSHMKLLITIHDRKEFAKFEEER 39 (67)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5678887777766677778888887776665
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=10.91 E-value=4.2e+02 Score=19.79 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 009985 489 SVGLTCFCISSIVIYHRERSFIYKIIRFR 517 (521)
Q Consensus 489 ~~g~~~~~~~~~~~~~~e~~~~~~~~~~~ 517 (521)
++|.+++++.-.+...+||++..++-+.+
T Consensus 23 liGllllliwk~~~~i~DrrE~~kFEkE~ 51 (79)
T 2knc_B 23 LIGLAALLIWKLLITIHDRKEFAKFEEER 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444556666666655444
No 5
>3qnq_A PTS system, cellobiose-specific IIC component; membrane protein, transporter, enzyme IIC, phosphoenolpyruva phosphotransferase system; HET: CBS ZDM MAL CIT; 3.29A {Bacillus cereus}
Probab=9.32 E-value=1.3e+03 Score=23.09 Aligned_cols=20 Identities=40% Similarity=0.571 Sum_probs=13.3
Q ss_pred hchHHHHHHHHHHHHHHHHH
Q 009985 413 AGSVGLILANSLNMILRIIY 432 (521)
Q Consensus 413 ~G~~G~i~a~~i~~~~ri~~ 432 (521)
+|..|+..|-++..+.--.|
T Consensus 141 lg~~GlF~AIIvglls~~Iy 160 (442)
T 3qnq_A 141 MGSQGLFVAMIIAIISTEIY 160 (442)
T ss_dssp SSTTTHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 57778888877776553333
No 6
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=3.78 E-value=4.4e+02 Score=14.83 Aligned_cols=13 Identities=15% Similarity=0.046 Sum_probs=7.2
Q ss_pred HhHHHHHHHHHhh
Q 009985 505 RERSFIYKIIRFR 517 (521)
Q Consensus 505 ~e~~~~~~~~~~~ 517 (521)
+|.+.+++-++|.
T Consensus 8 keledlqerlrkl 20 (27)
T 3twe_A 8 KELEDLQERLRKL 20 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5666665555444
No 7
>2veb_A Protoglobin; hemoprotein structure, protein matrix tunnels, methanogenesis, archaea protein, transport protein; HET: HEM; 1.30A {Methanosarcina acetivorans} PDB: 2vee_A* 3r0g_A* 3qzz_A* 3qzx_A*
Probab=3.64 E-value=2e+03 Score=19.08 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=45.1
Q ss_pred HHHhhhhhhhhhhhcCCccchhHHHHHhhhhHHHHH---------------------HHhhhhHhhHHHHHHHhcCCCch
Q 009985 249 LLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRM---------------------VFLPFEESSYATFARSASGQYPQ 307 (521)
Q Consensus 249 ~llt~~d~liig~~~~~~~~G~Y~~a~~l~sl~~~~---------------------~~~pi~~~~~p~fs~~~~~~~~~ 307 (521)
.+-...-+++..-+.+..++-|.+.-.++|-.=.|+ ...|+.++..|...+.. .+++
T Consensus 88 Rlr~~~~~W~~dLF~G~YD~~Yl~~r~rIGlvHvRI~k~~~dGV~~~~~i~~ry~ia~i~~i~~~i~~~l~~~~--~~~~ 165 (195)
T 2veb_A 88 AVRKRFSRWILDTSNRSYDQAWLDYQYEIGLRHHRTKKNQTDNVESVPNIGYRYLVAFIYPITATMKPFLARKG--HTPE 165 (195)
T ss_dssp HHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHSTTTTTTTTTCCCCSCCCHHHHHHTHHHHHHTTHHHHTSSS--CCHH
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhcccccCCCCcccCCchHHHHHHHHHHHHHHHHHHHHhC--CCHH
Confidence 333444455555666777888888777776543333 36689999999987743 2345
Q ss_pred hhHHHHHHHHHHHHH
Q 009985 308 KSKKIGNSLAEALKL 322 (521)
Q Consensus 308 ~~~~l~~~~~~~l~~ 322 (521)
+.+++.+++.+.+.+
T Consensus 166 ~~~~~~~A~~K~~~l 180 (195)
T 2veb_A 166 EVEKMYQAWFKATTL 180 (195)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666655433
No 8
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=3.61 E-value=5.7e+02 Score=14.06 Aligned_cols=14 Identities=14% Similarity=0.377 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhcCC
Q 009985 507 RSFIYKIIRFRNHK 520 (521)
Q Consensus 507 ~~~~~~~~~~~~~~ 520 (521)
+.-++.+++|+|.|
T Consensus 7 k~SLqRFleKRk~R 20 (21)
T 3ogl_Q 7 RASLHRFLEKRKDR 20 (26)
T ss_pred HHHHHHHHHHhhcc
Confidence 34556666666655
No 9
>2lma_A THP5 peptide; CD4+, immune system; NMR {Synthetic}
Probab=3.57 E-value=2.6e+02 Score=15.66 Aligned_cols=9 Identities=0% Similarity=0.342 Sum_probs=6.2
Q ss_pred hhChhhHHH
Q 009985 40 HLTEADYAI 48 (521)
Q Consensus 40 lLsP~~fGl 48 (521)
.++|.+||.
T Consensus 15 visppefg~ 23 (26)
T 2lma_A 15 VISPPEFGX 23 (26)
T ss_dssp TSSGGGGC-
T ss_pred EeCCccccc
Confidence 468888884
No 10
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=3.24 E-value=9.5e+02 Score=15.49 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 009985 490 VGLTCFCISSIVIYHRER 507 (521)
Q Consensus 490 ~g~~~~~~~~~~~~~~e~ 507 (521)
+|..+++.-=.+...+||
T Consensus 23 iGl~lLliwk~~~~i~Dr 40 (43)
T 2k9j_B 23 IGLAALLIWKLLITIHDR 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHheehh
Confidence 344333333333333444
Done!