Query 009985
Match_columns 521
No_of_seqs 185 out of 582
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 17:20:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009985.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009985hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtub2 f.17.2.1 (B:30-129) Ba 6.9 3.9E+02 0.029 18.7 6.9 18 89-106 68-85 (100)
2 d1j2jb_ a.7.8.1 (B:) ADP-ribos 4.8 3.6E+02 0.026 15.9 3.4 22 296-317 10-31 (41)
3 d3ehbb2 f.17.2.1 (B:1-107) Bac 3.3 7.4E+02 0.054 17.3 7.4 17 89-105 74-90 (107)
4 d2bl8a1 a.29.8.2 (A:4-103) Ent 2.4 9.2E+02 0.067 16.9 4.2 40 286-325 21-60 (100)
5 d1fftb2 f.17.2.1 (B:27-117) Cy 2.4 2.7E+02 0.02 19.3 1.2 17 89-105 59-75 (91)
6 d1oe8a1 a.45.1.1 (A:85-207) Cl 2.4 5.4E+02 0.039 18.1 3.1 47 232-278 41-87 (123)
7 d2axtz1 f.17.5.1 (Z:1-62) Phot 2.1 8.7E+02 0.063 15.5 6.9 34 344-378 27-60 (62)
8 d2c4ba2 g.3.2.1 (A:117-144) Tr 2.0 1.3E+02 0.0096 15.8 -0.9 7 515-521 5-11 (28)
9 d2d5ba1 a.27.1.1 (A:349-500) M 1.8 9.7E+02 0.071 17.3 4.1 39 307-345 81-119 (152)
10 d1ilea1 a.27.1.1 (A:642-821) I 1.8 7.9E+02 0.058 18.6 3.5 48 299-349 85-132 (180)
No 1
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.85 E-value=3.9e+02 Score=18.66 Aligned_cols=18 Identities=28% Similarity=0.724 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009985 89 AKLLKVAWLTLPLGIFIT 106 (521)
Q Consensus 89 ~~~~n~~~~~i~~g~~~~ 106 (521)
++.+...|..+|.-+++.
T Consensus 68 n~~LEiiWTviP~lILi~ 85 (100)
T d3dtub2 68 NSPLEIAWTIVPIVILVA 85 (100)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 345677998788655443
No 2
>d1j2jb_ a.7.8.1 (B:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.76 E-value=3.6e+02 Score=15.89 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=13.1
Q ss_pred HHHHHhcCCCchhhHHHHHHHH
Q 009985 296 TFARSASGQYPQKSKKIGNSLA 317 (521)
Q Consensus 296 ~fs~~~~~~~~~~~~~l~~~~~ 317 (521)
.++++..++.|+|.+...+...
T Consensus 10 lL~~LLkS~~PeDLqaANrLIK 31 (41)
T d1j2jb_ 10 MLARLLKSSHPEDLRAANKLIK 31 (41)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 4566667777777665544333
No 3
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=3.29 E-value=7.4e+02 Score=17.29 Aligned_cols=17 Identities=24% Similarity=0.620 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009985 89 AKLLKVAWLTLPLGIFI 105 (521)
Q Consensus 89 ~~~~n~~~~~i~~g~~~ 105 (521)
++.+...|.-+|.-+++
T Consensus 74 n~~lEi~WTviP~lIL~ 90 (107)
T d3ehbb2 74 NTPIEVIWTLVPVLILV 90 (107)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 34667899877754444
No 4
>d2bl8a1 a.29.8.2 (A:4-103) Enterocine A immunity protein, EntA-Im {Enterococcus faecium [TaxId: 1352]}
Probab=2.42 E-value=9.2e+02 Score=16.93 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=21.5
Q ss_pred HhhhhHhhHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHH
Q 009985 286 FLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLL 325 (521)
Q Consensus 286 ~~pi~~~~~p~fs~~~~~~~~~~~~~l~~~~~~~l~~~~~ 325 (521)
..+|.++..-...++-+.+..++.+.+.+.+-.+++..++
T Consensus 21 y~dI~dvL~~V~~K~d~~k~~~~p~al~nrLV~YI~~~a~ 60 (100)
T d2bl8a1 21 YSDILEVLQKVYLKLEKQKYELDPSPLINRLVNYLYFTAY 60 (100)
T ss_dssp GHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhccccCChHHHHHHHHHHHHHHHH
Confidence 3477888877777775443234456666656566665554
No 5
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=2.42 E-value=2.7e+02 Score=19.34 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009985 89 AKLLKVAWLTLPLGIFI 105 (521)
Q Consensus 89 ~~~~n~~~~~i~~g~~~ 105 (521)
++.+...|..+|.-+++
T Consensus 59 n~~lEi~WtiIP~iil~ 75 (91)
T d1fftb2 59 SNKVEAVVWTVPILIII 75 (91)
T ss_dssp CSHHHHHTTHHHHHHHH
T ss_pred CceehhhHHHHHHHHHH
Confidence 34566799777765544
No 6
>d1oe8a1 a.45.1.1 (A:85-207) Class alpha GST {Blood fluke (Schistosoma haematobium) [TaxId: 6185]}
Probab=2.37 E-value=5.4e+02 Score=18.07 Aligned_cols=47 Identities=15% Similarity=0.047 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccchhHHHHHhhh
Q 009985 232 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLG 278 (521)
Q Consensus 232 k~l~~f~~~l~~~si~~~llt~~d~liig~~~~~~~~G~Y~~a~~l~ 278 (521)
++.+.-..+-....+-+.+-.++..+++|.-.|.+|..+|....++.
T Consensus 41 ~~~~~~~l~~~l~~le~~L~~~~~~f~vG~~lT~aD~~~~~~l~~~~ 87 (123)
T d1oe8a1 41 KEILNGKVPVLLDIICESLKASTGKLAVGDKVTLADLVLIAVIDHVT 87 (123)
T ss_dssp HHHHTTHHHHHHHHHHHHHHTCSSSSSSTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHhhCCCCeeeCCCCcHHHHHHHHHHHHHH
Confidence 34444445555566666666667789999999999999999887664
No 7
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.14 E-value=8.7e+02 Score=15.51 Aligned_cols=34 Identities=12% Similarity=0.261 Sum_probs=19.9
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHHHHhhhhHHHH
Q 009985 344 LLYGKKWSDGEASTALRYYCLYVVVLAMNGTSEAF 378 (521)
Q Consensus 344 ll~g~kw~~~~~~~il~~~~~~~~~~~~ng~~eaf 378 (521)
..-+|.|.++. ..++.=-...+.+-.+.|+++.|
T Consensus 27 ~ASP~gW~~sK-~lvfsG~~~W~~LV~lvgilNsf 60 (62)
T d2axtz1 27 YASPQDWDRSK-QLIFLGSGLWIALVLVVGVLNFF 60 (62)
T ss_dssp HHCCTTTTHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCcccccC-ceEEEchhHHHHHHHHHHhhhee
Confidence 34578999985 33554444455555556666544
No 8
>d2c4ba2 g.3.2.1 (A:117-144) Trypsin inhibitor {Jumping cucumber (Ecballium elaterium) [TaxId: 3679]}
Probab=1.98 E-value=1.3e+02 Score=15.75 Aligned_cols=7 Identities=14% Similarity=0.164 Sum_probs=3.6
Q ss_pred HhhcCCC
Q 009985 515 RFRNHKD 521 (521)
Q Consensus 515 ~~~~~~~ 521 (521)
.||++||
T Consensus 5 lkkcrrd 11 (28)
T d2c4ba2 5 LKKCRRD 11 (28)
T ss_dssp CCBCSSG
T ss_pred HHHhccc
Confidence 3455554
No 9
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=1.82 E-value=9.7e+02 Score=17.35 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Q 009985 307 QKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLL 345 (521)
Q Consensus 307 ~~~~~l~~~~~~~l~~~~~l~~~~~~~~~~~a~~li~ll 345 (521)
+|.++.+.+....+..+-.++..+-.+.|-.++.+...+
T Consensus 81 ~d~~~~~~vl~~~l~~lr~l~ilL~P~mP~~~~ki~~~L 119 (152)
T d2d5ba1 81 KEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRAL 119 (152)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHc
No 10
>d1ilea1 a.27.1.1 (A:642-821) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}
Probab=1.78 E-value=7.9e+02 Score=18.56 Aligned_cols=48 Identities=23% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCC
Q 009985 299 RSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKK 349 (521)
Q Consensus 299 ~~~~~~~~~~~~~l~~~~~~~l~~~~~l~~~~~~~~~~~a~~li~ll~g~k 349 (521)
+...+++.++++....++..+++....+..|++ |..++++-.-+.++.
T Consensus 85 ~l~~~~~~~~~~~~~~~l~~il~~~l~llaP~~---PfitEEiw~~l~~~~ 132 (180)
T d1ilea1 85 RFWKNEDALDREAAYATLYEALVLVATLAAPFT---PFLAEVLWQNLVRSV 132 (180)
T ss_dssp HHHTCTTTSSTTHHHHHHHHHHHHHHHHHTTTS---TTHHHHHHHHHTTTT
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccc
Done!