BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009986
(521 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3TIX9|SNUT2_MOUSE U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus GN=Usp39
PE=2 SV=2
Length = 564
Score = 424 bits (1089), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/495 (46%), Positives = 308/495 (62%), Gaps = 57/495 (11%)
Query: 70 RTGEDDDEDKDEDEDDLANGYGQGQRSRLVEVRRDCPYLDTVNRQVLDFDFEKFCSVSLS 129
R E D++ + E E NG + R R CPYLDT+NR VLDFDFEK CS+SLS
Sbjct: 73 REREADEDSEPEREVRAKNGRVDSEDRR----SRHCPYLDTINRSVLDFDFEKLCSISLS 128
Query: 130 NLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDI 189
++N YACLVCGKY+QGRG KSHAY HS++ HHV++NL T K YCLPD YEI D SLEDI
Sbjct: 129 HINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDI 188
Query: 190 RHV---------------------------------GLNNIKETDFVNVTIQSLMRVTPL 216
+V GLNNIK D+ N +Q+L V PL
Sbjct: 189 TYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPL 248
Query: 217 RNFFLIPENYRHCKSP-------LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKK 269
RN+FL +NY++ K P LV RFG+L RK+W+ RNFK VSPHE LQAV+ SKK
Sbjct: 249 RNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKK 308
Query: 270 RFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTSIIYECFQGELEV-VKEIPKNTISGND 327
F+I Q + V+F+SW LN LHS L KK +I+ + FQG + + K++P + +
Sbjct: 309 TFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVNDVFQGSMRIFTKKLPHPDLPAEE 368
Query: 328 QNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFD 387
+ + D++ E++ F+ L LDLP PL+KD E+ IIPQVPLFNIL KF+
Sbjct: 369 KEQLLHN---DEYQETMVEST---FMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILAKFN 422
Query: 388 GETVTE--VVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKD 445
G T E + + + R+++T+LP Y+I ++RFTKNNFFVEKNPT+VNFP+ N++L++
Sbjct: 423 GITEKEYKTYKENFLK-RFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLRE 481
Query: 446 YIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQ 505
Y+ ++ + YDLIANIVHDGKP G YR+ V WYE+QDL V++ LPQ
Sbjct: 482 YLSEEVQAVHKN--TTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQ 539
Query: 506 MVALSETYMQIYEQQ 520
M+ LSE Y+QI++++
Sbjct: 540 MITLSEAYIQIWKRR 554
>sp|Q53GS9|SNUT2_HUMAN U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39
PE=1 SV=2
Length = 565
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/495 (46%), Positives = 308/495 (62%), Gaps = 57/495 (11%)
Query: 70 RTGEDDDEDKDEDEDDLANGYGQGQRSRLVEVRRDCPYLDTVNRQVLDFDFEKFCSVSLS 129
R E D++ + E E NG + R R CPYLDT+NR VLDFDFEK CS+SLS
Sbjct: 74 REREVDEDSEPEREVRAKNGRVDSEDRR----SRHCPYLDTINRSVLDFDFEKLCSISLS 129
Query: 130 NLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDI 189
++N YACLVCGKY+QGRG KSHAY HS++ HHV++NL T K YCLPD YEI D SLEDI
Sbjct: 130 HINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDI 189
Query: 190 RHV---------------------------------GLNNIKETDFVNVTIQSLMRVTPL 216
+V GLNNIK D+ N +Q+L V PL
Sbjct: 190 TYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPL 249
Query: 217 RNFFLIPENYRHCKSP-------LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKK 269
RN+FL +NY++ K P LV RFG+L RK+W+ RNFK VSPHE LQAV+ SKK
Sbjct: 250 RNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKK 309
Query: 270 RFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTSIIYECFQGELEV-VKEIPKNTISGND 327
F+I Q + V+F+SW LN LHS L KK +I+ + FQG + + K++P + +
Sbjct: 310 TFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKLPHPDLPAEE 369
Query: 328 QNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFD 387
+ + D++ E++ F+ L LDLP PL+KD E+ IIPQVPLFNIL KF+
Sbjct: 370 KEQLLHN---DEYQETMVEST---FMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILAKFN 423
Query: 388 GETVTE--VVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKD 445
G T E + + + R+++T+LP Y+I ++RFTKNNFFVEKNPT+VNFP+ N++L++
Sbjct: 424 GITEKEYKTYKENFLK-RFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLRE 482
Query: 446 YIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQ 505
Y+ ++ + YDLIANIVHDGKP G YR+ V WYE+QDL V++ LPQ
Sbjct: 483 YLSEEVQAVHKN--TTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQ 540
Query: 506 MVALSETYMQIYEQQ 520
M+ LSE Y+QI++++
Sbjct: 541 MITLSEAYIQIWKRR 555
>sp|Q5R761|SNUT2_PONAB U4/U6.U5 tri-snRNP-associated protein 2 OS=Pongo abelii GN=USP39
PE=2 SV=1
Length = 565
Score = 421 bits (1082), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/495 (46%), Positives = 307/495 (62%), Gaps = 57/495 (11%)
Query: 70 RTGEDDDEDKDEDEDDLANGYGQGQRSRLVEVRRDCPYLDTVNRQVLDFDFEKFCSVSLS 129
R E D++ + E E NG + R R CPYLDT+NR VLDFDFEK CS+S S
Sbjct: 74 REREVDEDSEPEREVRAKNGRVDSEDRR----SRHCPYLDTINRSVLDFDFEKLCSISPS 129
Query: 130 NLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDI 189
++N YACLVCGKY+QGRG KSHAY HS++ HHV++NL T K YCLPD YEI D SLEDI
Sbjct: 130 HVNAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDI 189
Query: 190 RHV---------------------------------GLNNIKETDFVNVTIQSLMRVTPL 216
+V GLNNIK D+ N +Q+L V PL
Sbjct: 190 TYVLKPTFTKQQIANLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPL 249
Query: 217 RNFFLIPENYRHCKSP-------LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKK 269
RN+FL +NY++ K P LV RFG+L RK+W+ RNFK VSPHE LQAV+ SKK
Sbjct: 250 RNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKK 309
Query: 270 RFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTSIIYECFQGELEV-VKEIPKNTISGND 327
F+I Q + V+F+SW LN LHS L KK +I+ + FQG + + K++P + +
Sbjct: 310 TFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTKKLPHPDLPAEE 369
Query: 328 QNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFD 387
+ + D++ E++ F+ L LDLP PL+KD E+ IIPQVPLFNIL KF+
Sbjct: 370 KEQLLHN---DEYQETMVEST---FMYLTLDLPTAPLYKDEKEQLIIPQVPLFNILAKFN 423
Query: 388 GETVTE--VVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKD 445
G T E + + + R+++T+LP Y+I ++RFTKNNFFVEKNPT+VNFP+ N++L++
Sbjct: 424 GITEKEYKTYKENFLK-RFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLRE 482
Query: 446 YIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQ 505
Y+ +E + YDLIANIVHDGKP G YR+ V WYE+QDL V++ LPQ
Sbjct: 483 YLSEEVQAVHEN--TTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDILPQ 540
Query: 506 MVALSETYMQIYEQQ 520
M+ LSE Y+QI++++
Sbjct: 541 MITLSEAYIQIWKRR 555
>sp|Q9USR2|UBP10_SCHPO Probable mRNA-splicing protein ubp10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubp10 PE=3 SV=1
Length = 502
Score = 342 bits (878), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 184/454 (40%), Positives = 266/454 (58%), Gaps = 54/454 (11%)
Query: 107 YLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYIN 166
YLDT+NR++LDFDFEK CSVSL+NL+VYACLVCG+Y+QGRG SHAY H+L HHV++N
Sbjct: 60 YLDTINRKLLDFDFEKVCSVSLTNLSVYACLVCGRYFQGRGPSSHAYFHALTENHHVFVN 119
Query: 167 LRTEKVYCLPDGYEINDPSLEDIRHV---------------------------------G 193
T K Y LP+ Y++ +L+DI +V G
Sbjct: 120 CSTLKFYVLPESYQVESSALQDIAYVMRPTFTKLEVQRLDHTPQLSYDLMLKPYVPGFVG 179
Query: 194 LNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQ 253
+NNIK D+ NV I L V P RN+FL+ +N+ +C LV R L RK+W+ + FK
Sbjct: 180 MNNIKNNDYFNVVIHMLAHVKPFRNYFLL-KNFDNCPQ-LVQRLAILIRKLWNHKAFKSH 237
Query: 254 VSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK----KNTSIIYECFQ 309
VSP E +Q V S K++ I Q +PVEF+SW LNTLH+ L K K TSI++ FQ
Sbjct: 238 VSPQELIQEVTVLSHKKYSINEQKDPVEFLSWFLNTLHNCLGGKKSTIAKPTSIVHYSFQ 297
Query: 310 GELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVM 369
G + + + + Q+ EKG D + +T+ +PFL L LDLPP P+F+D
Sbjct: 298 GFVRIESQKIR-------QHAEKGEQVVFTGDRVI-QTNVVPFLYLTLDLPPKPIFQDEF 349
Query: 370 EKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEK 429
E NIIPQV L IL K++G E+ R R+ + P Y I H++RF KNN+F E+
Sbjct: 350 EGNIIPQVELKEILNKYNGVHTQELAG---MRRRFHLMTAPPYFIFHIKRFMKNNYFTER 406
Query: 430 NPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHD----GKPEGGFYRVFVQR 485
N T+V FP+ + ++ +I + N K+ +KY+L+ANI+H+ + E +R+ ++
Sbjct: 407 NQTIVTFPLDDFDMSPFIDDSFIQSNPKISTKYNLVANIIHESVTHAEEEFHNFRIQIRN 466
Query: 486 KSEELWYEMQDLHVSETLPQMVALSETYMQIYEQ 519
S WY++QDL+V E M+ L E+++Q++E+
Sbjct: 467 PSTNKWYQIQDLYVEEISSDMIRLGESFIQLWER 500
>sp|P43589|SAD1_YEAST Pre-mRNA-splicing factor SAD1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SAD1 PE=1 SV=1
Length = 448
Score = 169 bits (428), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 130/465 (27%), Positives = 214/465 (46%), Gaps = 97/465 (20%)
Query: 107 YLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYIN 166
YL+TV R+ LDFD EK C ++LS LNVY CLVCG YYQGR +KS A+ HS++ HHV++N
Sbjct: 31 YLETVVREKLDFDSEKICCITLSPLNVYCCLVCGHYYQGRHEKSPAFIHSIDENHHVFLN 90
Query: 167 LRTEKVYCLPDGYEI--------------------NDPSLEDI--------------RHV 192
L + K Y LP +I LED +
Sbjct: 91 LTSLKFYMLPQNVQILHDGEVQLLNSIKFAAYPTYCPKDLEDFPRQCFDLSNRTYLNGFI 150
Query: 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKG 252
G N D+ + + + + P+R+ FL+ N+ + + R +KIW + FK
Sbjct: 151 GFTNAATYDYAHSVLLLISHMVPVRDHFLL--NHFDNQGEFIKRLSICVKKIWSPKLFKH 208
Query: 253 QVSPHEFLQAVMKASKKRFRIGVQSNPVE---FMSWLLNTLHSDLRNTKKNTSIIYECFQ 309
+S +F+ S + R G+ NP++ F+ WL N + S + K SI+ +
Sbjct: 209 HLSVDDFV------SYLKVREGLNLNPIDPRLFLLWLFNKICSSSNDLK---SILNHSCK 259
Query: 310 GELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVM 369
G++++ K +N + S+ +T + PF +L LDLP F+D
Sbjct: 260 GKVKIAKV----------ENKPEASES------VTGKVIVKPFWVLTLDLPEFSPFEDGN 303
Query: 370 EKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEK 429
+ +PQ+ + +L KF + + +TRLP+++I H RF +N+
Sbjct: 304 SVDDLPQINITKLLTKFTKSRSSS------TSTVFELTRLPQFLIFHFNRFDRNS----- 352
Query: 430 NPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVH-------------DGKPEG 476
+ PVKN ++ + E E L KY L AN+VH +G +
Sbjct: 353 -----DHPVKN---RNQTLVEFSSELEILHVKYRLKANVVHVVIKQPSTDGNAFNGDEKS 404
Query: 477 GFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQQ 521
+ KSE+ W E+ ++ +E +++ L ET++Q++E+Q+
Sbjct: 405 HWITQLYDNKSEK-WIEIDGINTTEREAELLFLKETFIQVWEKQE 448
>sp|Q91W36|UBP3_MOUSE Ubiquitin carboxyl-terminal hydrolase 3 OS=Mus musculus GN=Usp3
PE=2 SV=1
Length = 520
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 129/531 (24%), Positives = 192/531 (36%), Gaps = 133/531 (25%)
Query: 104 DCPYLDTVNRQVLDFDFEKF---------CSVSLSNLNVYACLVCGKYYQGRGQKSHAYT 154
+CP+L + + D KF CSV SN + + CL C + GR HA
Sbjct: 2 ECPHLSS--SVCIAPDSAKFPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKK 59
Query: 155 H----------------SLEAGHHVYINLRTEKVYCL-PDGYEINDPSLEDIRHV----- 192
H +A H V ++ + YC D + +ND L ++ V
Sbjct: 60 HYEDAQIPLLNHKRSEKQEKAQHTVCMDCSSYSTYCYRCDDFVVNDTKLGLVQKVREHLQ 119
Query: 193 ----------------------------------------GLNNIKETDFVNVTIQSLMR 212
GL N+ T F+N +QSL
Sbjct: 120 NLENSAFTADRHRKRKLLENSSLNSKLLKVNGSTTAICATGLRNLGNTCFMNAILQSLSN 179
Query: 213 V------------TPLRNFFLIPENYRHCKS------PLVHRFGDLTRKIWHARNFKGQV 254
+ LRN H +S LV F +W +
Sbjct: 180 IEQFCCYFKELPAVELRNGKTAGRRTYHTRSQGDSNVSLVEEFRKTLCALWQGS--QTAF 237
Query: 255 SPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLR---NTKKNTSIIYE----- 306
SP V K FR Q + EFM +LL+ LH +L+ N ++I+ E
Sbjct: 238 SPESLFYVVWKI-MPNFRGYQQQDAHEFMRYLLDHLHLELQGGFNGVSRSAILQENSTLS 296
Query: 307 -----CFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRM-PFLMLGLDLP 360
C G VV I G QN G TE+ + PFL L LD+P
Sbjct: 297 ASNKCCINGASTVVTAI----FGGILQNEVNCLICG-------TESRKFDPFLDLSLDIP 345
Query: 361 PPPLFKDVMEKNIIPQVPLFNILKKF-DGETV--TEVVRPHVARMR------YRVTRLPK 411
K + P L + L+ F D E + TE+ H + + + + +LPK
Sbjct: 346 SQFRSKRSKNQENGPVCSLRDCLRSFTDLEELDETELYMCHKCKKKQKSTKKFWIQKLPK 405
Query: 412 YMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHD 471
+ LH++RF + K T V FP++ L++K Y L P+ + YDL A +VH
Sbjct: 406 ALCLHLKRFHWTAYLRNKVDTYVQFPLRGLDMKCY--LLEPENSGPDSCLYDLAAVVVHH 463
Query: 472 GKPEG-GFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQQ 521
G G G Y + E W+ D V+ T + V ++ Y+ Y ++Q
Sbjct: 464 GSGVGSGHYTAYAVH--EGRWFHFNDSTVTVTDEETVGKAKAYILFYVERQ 512
>sp|Q9Y6I4|UBP3_HUMAN Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sapiens GN=USP3
PE=1 SV=2
Length = 520
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 129/531 (24%), Positives = 191/531 (35%), Gaps = 133/531 (25%)
Query: 104 DCPYLDTVNRQVLDFDFEKF---------CSVSLSNLNVYACLVCGKYYQGRGQKSHAYT 154
+CP+L + + D KF CSV SN + + CL C + GR HA
Sbjct: 2 ECPHLSS--SVCIAPDSAKFPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKK 59
Query: 155 HSLEAG----------------HHVYINLRTEKVYCL-PDGYEINDPSLEDIRHV----- 192
H +A H V ++ + YC D + +ND L ++ V
Sbjct: 60 HYEDAQVPLTNHKKSEKQDKVQHTVCMDCSSYSTYCYRCDDFVVNDTKLGLVQKVREHLQ 119
Query: 193 ----------------------------------------GLNNIKETDFVNVTIQSLMR 212
GL N+ T F+N +QSL
Sbjct: 120 NLENSAFTADRHKKRKLLENSTLNSKLLKVNGSTTAICATGLRNLGNTCFMNAILQSLSN 179
Query: 213 V------------TPLRNFFLIPENYRHCKS------PLVHRFGDLTRKIWHARNFKGQV 254
+ LRN H +S LV F +W +
Sbjct: 180 IEQFCCYFKELPAVELRNGKTAGRRTYHTRSQGDNNVSLVEEFRKTLCALWQGS--QTAF 237
Query: 255 SPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLR---NTKKNTSIIYE----- 306
SP V K FR Q + EFM +LL+ LH +L+ N ++I+ E
Sbjct: 238 SPESLFYVVWKI-MPNFRGYQQQDAHEFMRYLLDHLHLELQGGFNGVSRSAILQENSTLS 296
Query: 307 -----CFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRM-PFLMLGLDLP 360
C G VV I G QN G TE+ + PFL L LD+P
Sbjct: 297 ASNKCCINGASTVVTAI----FGGILQNEVNCLICG-------TESRKFDPFLDLSLDIP 345
Query: 361 PPPLFKDVMEKNIIPQVPLFNILKKF-DGETV--TEVVRPHVARMR------YRVTRLPK 411
K + P L + L+ F D E + TE+ H + + + + +LPK
Sbjct: 346 SQFRSKRSKNQENGPVCSLRDCLRSFTDLEELDETELYMCHKCKKKQKSTKKFWIQKLPK 405
Query: 412 YMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHD 471
+ LH++RF + K T V FP++ L++K Y L P+ + YDL A +VH
Sbjct: 406 VLCLHLKRFHWTAYLRNKVDTYVEFPLRGLDMKCY--LLEPENSGPESCLYDLAAVVVHH 463
Query: 472 GKPEG-GFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQQ 521
G G G Y + E W+ D V+ T + V ++ Y+ Y + Q
Sbjct: 464 GSGVGSGHYTAYATH--EGRWFHFNDSTVTLTDEETVVKAKAYILFYVEHQ 512
>sp|O57429|UBP2_CHICK Ubiquitin carboxyl-terminal hydrolase 2 OS=Gallus gallus GN=USP2
PE=2 SV=1
Length = 357
Score = 82.4 bits (202), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 148/351 (42%), Gaps = 44/351 (12%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYR------HCKSPLVHRFGDLTRKIW 245
GL N+ T F+N +Q L LR++ L + R ++ L+ F L + +W
Sbjct: 19 TGLRNLGNTCFMNSILQCLSNTKELRDYCLQNQYLRDLNNNSRMRTALMSEFAKLIQLLW 78
Query: 246 HARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIY 305
+ VSP EF + + + RF Q + EF+ +LL+ LH ++ N ++
Sbjct: 79 TSSP-NDSVSPSEFKTQIQRYAP-RFVGYNQQDAQEFLRFLLDGLHGEV-----NRVLVR 131
Query: 306 ECFQGELEVVKEIPKNTISGN------DQNTEKGSD--GGDDHDNITTE------TSRMP 351
+ + + +P + S ++ + SD G ++T T+ P
Sbjct: 132 P--RANADTLDHLPDDEKSRQMWRRYQEREDSRVSDLFVGQLKSSLTCSECGYCSTAFDP 189
Query: 352 FLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMR----YRVT 407
F L L +P K E ++ + LF DG+ R AR R + +
Sbjct: 190 FWDLSLPIPK----KGYGEVTLMDCLRLFTKEDVLDGDEKPTCCRCK-ARTRCTKKFSIQ 244
Query: 408 RLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIAN 467
+ PK ++LH++RF++ K T VNFP+K+L+L+++ + N + Y+L A
Sbjct: 245 KFPKILVLHLKRFSEARIRASKLTTFVNFPLKDLDLREF---ASQSCNHAV---YNLYAV 298
Query: 468 IVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYE 518
H G GG Y + + W+ D V+ V S+ Y+ YE
Sbjct: 299 SNHSGTTMGGHYTAYCKSPISSEWHSFNDSRVTPMSSSHVRSSDAYLLFYE 349
>sp|O75604|UBP2_HUMAN Ubiquitin carboxyl-terminal hydrolase 2 OS=Homo sapiens GN=USP2
PE=1 SV=2
Length = 605
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 143/349 (40%), Gaps = 40/349 (11%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYR------HCKSPLVHRFGDLTRKIW 245
GL N+ T F+N +Q L LR++ L R + + LV F L + IW
Sbjct: 267 AGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIW 326
Query: 246 HARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDL-------RNTK 298
+ + VSP EF + + + RF Q + EF+ +LL+ LH+++ ++
Sbjct: 327 TS-SPNDVVSPSEFKTQIQRYAP-RFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNP 384
Query: 299 KNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLD 358
+N + + +G K + + D + D T PF L L
Sbjct: 385 ENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLP 444
Query: 359 LPPPPLFKDVMEKNIIPQVPLFNILKKF------DGE---TVTEVVRPHVARMRYRVTRL 409
+ K P+V L + ++ F DG+ T ++ + R
Sbjct: 445 I----------AKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRF 494
Query: 410 PKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIV 469
PK ++LH++RF+++ K T VNFP+++L+L+++ EN + Y+L A
Sbjct: 495 PKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFA-----SENTN-HAVYNLYAVSN 548
Query: 470 HDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYE 518
H G GG Y + + W+ D V+ V S+ Y+ YE
Sbjct: 549 HSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 597
>sp|Q6P8X6|UBP50_MOUSE Putative ubiquitin carboxyl-terminal hydrolase 50 OS=Mus musculus
GN=Usp50 PE=2 SV=1
Length = 390
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 142/360 (39%), Gaps = 72/360 (20%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFL----IPENYRHCKSPLVHRFGDLTRKIWHA 247
GL N+ T ++N +Q L V+PL +FL I + C S + F L +W
Sbjct: 45 TGLRNLGNTCYMNAILQCLCSVSPLVEYFLSGKYITALKKDC-SEVTTAFAYLMTDMWLG 103
Query: 248 RNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLR-------NTKKN 300
+ VSP FL AV + F Q + EF+ ++LN LH L+ N K+
Sbjct: 104 DS--DCVSPEIFLSAV-GSLYPAFLKKTQQDAQEFLIYVLNELHEALKKHCRRRVNEKRT 160
Query: 301 ------------TSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETS 348
TSII F+G+L T + T K
Sbjct: 161 GQSCCRKVPAQETSIITRLFEGQLSY-----SITCLKCESCTHKNE-------------- 201
Query: 349 RMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHV--------A 400
F +L L +P E ++ + F F +T+T + + A
Sbjct: 202 --VFTILSLPIPSD------YECSLQDCLQCF-----FQQDTLTWSNQIYCSFCEIKQEA 248
Query: 401 RMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRS 460
+R ++++PK ++ H +RF K T +++P+ NL+L YI P +++
Sbjct: 249 AVRTTISKVPKIIVFHFKRFDIQGTVKRKLRTDIHYPLTNLDLTPYI-CPVFRKHPM--- 304
Query: 461 KYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQ 520
Y+L A + H G +GG Y F + + WY D VSE V + Y+ Y Q
Sbjct: 305 -YNLCAVVNHFGDLDGGHYTAFCKNSVTQAWYSFDDTRVSEIPDTSVQTATAYLLFYSCQ 363
>sp|O88623|UBP2_MOUSE Ubiquitin carboxyl-terminal hydrolase 2 OS=Mus musculus GN=Usp2
PE=1 SV=2
Length = 613
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 145/365 (39%), Gaps = 72/365 (19%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYR---HCKSP---LVHRFGDLTRKIW 245
GL N+ T F+N +Q L LR++ L R H S L+ F L + IW
Sbjct: 275 AGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLGHTSSAHTALMEEFAKLIQTIW 334
Query: 246 HARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIY 305
+ + VSP EF + + + RF Q + EF+ +LL+ LH+++
Sbjct: 335 TS-SPNDVVSPSEFKTQIQRYAP-RFMGYNQQDAQEFLRFLLDGLHNEVNRVAARP---- 388
Query: 306 ECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLG--------- 356
+ E + +P + EKG + + E SR+ L +G
Sbjct: 389 ---KASPETLDHLP---------DEEKGRQMWRKY--LEREDSRIGDLFVGQLKSSLTCT 434
Query: 357 --------------LDLPPPPLFKDVMEKNIIPQVPLFNILKKF------DGE---TVTE 393
L LP + K P+V L + ++ F DG+ T
Sbjct: 435 DCGYCSTVFDPFWDLSLP--------IAKRGYPEVTLMDCMRLFTKEDILDGDEKPTCCR 486
Query: 394 VVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPK 453
++ V R PK ++LH++RF+++ K T VNFP+++L+L+++
Sbjct: 487 CRARKRCIKKFSVQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFA-----S 541
Query: 454 ENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETY 513
EN + Y+L A H G GG Y + + W+ D V+ V S+ Y
Sbjct: 542 ENTN-HAVYNLYAVSNHSGTTMGGHYTAYCRSPVTGEWHTFNDSSVTPMSSSQVRTSDAY 600
Query: 514 MQIYE 518
+ YE
Sbjct: 601 LLFYE 605
>sp|Q5U349|UBP2_RAT Ubiquitin carboxyl-terminal hydrolase 2 OS=Rattus norvegicus
GN=Usp2 PE=1 SV=1
Length = 618
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 145/367 (39%), Gaps = 76/367 (20%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYR---HCKSP---LVHRFGDLTRKIW 245
GL N+ T F+N +Q L LR++ L R H S L+ F L + IW
Sbjct: 280 AGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLGHTSSAHTALMEEFAKLIQTIW 339
Query: 246 HARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIY 305
+ + VSP EF + + + RF Q + EF+ +LL+ LH+
Sbjct: 340 TS-SPNDVVSPSEFKTQIQRYAP-RFVGYNQQDAQEFLRFLLDGLHN------------- 384
Query: 306 ECFQGELEVVKEIPKNTISGNDQ--NTEKGSDGGDDHDNITTETSRMPFLMLG------- 356
E+ V PK + D + EKG + + E SR+ L +G
Sbjct: 385 -----EVNRVAARPKPSPESLDHLPDEEKGRQMWRKY--LEREDSRIGDLFVGQLKSSLT 437
Query: 357 ----------------LDLPPPPLFKDVMEKNIIPQVPLFNILKKF------DGE---TV 391
L LP + K P+V L + ++ F DG+ T
Sbjct: 438 CTDCGYCSTVFDPFWDLSLP--------IAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTC 489
Query: 392 TEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPT 451
++ V R PK ++LH++RF+++ K T VNFP+++L+L+++
Sbjct: 490 CRCRARKRCIKKFSVQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFA---- 545
Query: 452 PKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSE 511
EN + Y+L A H G GG Y + + W+ D V+ V S+
Sbjct: 546 -SENTN-HAVYNLYAVSNHSGTTMGGHYTAYCRSPVTGEWHTFNDSSVTPMSSSQVRTSD 603
Query: 512 TYMQIYE 518
Y+ YE
Sbjct: 604 AYLLFYE 610
>sp|Q4R6D3|UBP50_MACFA Putative ubiquitin carboxyl-terminal hydrolase 50 OS=Macaca
fascicularis GN=USP50 PE=2 SV=1
Length = 373
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 142/355 (40%), Gaps = 60/355 (16%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFL----IPENYRHCKSPLVHRFGDLTRKIWHA 247
GL N+ T ++N +Q L ++PL +FL I C S + F L +W
Sbjct: 44 TGLRNLGNTCYMNAILQCLCSISPLVEYFLSGKYITALQNDC-SEVATAFAYLMTDMWLG 102
Query: 248 RNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYEC 307
+ VSP E ++ + F Q + EF+ ++LN LH L+
Sbjct: 103 DS--DCVSP-EIFRSALGNLYPAFTKKTQQDAQEFLIYVLNELHEALKK----------- 148
Query: 308 FQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETS--------RMPFLMLGLDL 359
P+ ++ EKGS ITTETS ++ + ++ L
Sbjct: 149 --------YHYPRR------RSHEKGSAQRCCRKWITTETSVITQLFEGQLNYSIVCLKC 194
Query: 360 PPPPLFKDVMEKNIIP-----QVPLFNILKKF-DGETVTEVVRPHVA--------RMRYR 405
+V +P + L + L+ F +T+T + H + +R
Sbjct: 195 EKCTYKNEVFTVLSLPIPSEYECSLQDCLQCFFQQDTLTWNNQIHCSFCETKQETAVRAG 254
Query: 406 VTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLI 465
+++ PK +I H++RF K T +++P+ NL+L YI P ++ KY+L
Sbjct: 255 ISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLDLTPYI-CPIFRK----YPKYNLC 309
Query: 466 ANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQ 520
A + H G +GG Y F + + WY D VSE V + Y+ Y Q
Sbjct: 310 AVVNHFGDLDGGHYTAFCKNSFTQAWYSFDDTRVSEIPDTSVQNATAYLLFYSCQ 364
>sp|Q2KHV7|UBP2_BOVIN Ubiquitin carboxyl-terminal hydrolase 2 OS=Bos taurus GN=USP2 PE=2
SV=1
Length = 606
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 144/355 (40%), Gaps = 52/355 (14%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYR------HCKSPLVHRFGDLTRKIW 245
GL N+ T F+N +Q L LR++ L R + L+ F L + IW
Sbjct: 268 AGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYLRDLSHSSRAHTALMEEFAKLIQTIW 327
Query: 246 HARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNT----KKNT 301
+ + VSP EF + + + RF Q + EF+ +LL+ LH+++ K NT
Sbjct: 328 TS-SPNDVVSPSEFKTQIQRYAP-RFVGYNQQDAQEFLRFLLDGLHNEVNRVIARPKSNT 385
Query: 302 SII---------YECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPF 352
+ + ++ LE + G +++ +D G T PF
Sbjct: 386 ENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCG------YCSTVFDPF 439
Query: 353 LMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKF------DGE---TVTEVVRPHVARMR 403
L L + K P+V L + ++ F DG+ T +
Sbjct: 440 WDLSLPI----------TKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRARKRCIKK 489
Query: 404 YRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYD 463
+ + R PK ++LH++RF+++ K VNFP+++L+L+++ EN + Y+
Sbjct: 490 FSIQRFPKILVLHLKRFSESRIRTSKLTAFVNFPLRDLDLREFA-----SENTN-HAVYN 543
Query: 464 LIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYE 518
L A H G GG Y + + W+ D VS V S+ Y+ YE
Sbjct: 544 LYAVSNHSGTTMGGHYTAYCRSPVTGEWHTFNDSSVSPMSSSQVRTSDAYLLFYE 598
>sp|Q9SUX7|FB245_ARATH Putative F-box protein At4g22420 OS=Arabidopsis thaliana
GN=At4g22420 PE=4 SV=1
Length = 184
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 70/118 (59%), Gaps = 7/118 (5%)
Query: 21 KVVEQSSPSPPRLGFENPLLPLANTYDD-----DDEEEEYGGRGDSGAKVGQNGR--TGE 73
+V+E+S PP LGF N LLPLAN YDD +E ++ R + AK NG GE
Sbjct: 41 RVIERSDSPPPPLGFNNHLLPLANAYDDDDEEEGNELKKSQARRNGVAKGEGNGNKVNGE 100
Query: 74 DDDEDKDEDEDDLANGYGQGQRSRLVEVRRDCPYLDTVNRQVLDFDFEKFCSVSLSNL 131
+E DE++DD G+G+ SR VEVRRDCPYLDTVNRQV+ D V L+ +
Sbjct: 101 AQEEVDDEEDDDDDASKGRGKHSRHVEVRRDCPYLDTVNRQVIIIDQFLMLRVPLATM 158
>sp|Q9QZL6|UBP21_MOUSE Ubiquitin carboxyl-terminal hydrolase 21 OS=Mus musculus GN=Usp21
PE=1 SV=1
Length = 566
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/374 (23%), Positives = 141/374 (37%), Gaps = 67/374 (17%)
Query: 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFL-------IPENYRHCKSPLVHRFGDLTRK 243
HVGL N+ T F+N +Q L PLR+F L +P R L F D+
Sbjct: 211 HVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGR--AQELTEAFADVIGA 268
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTS 302
+WH + + V+P F +AV + F Q + EF+ L+ LH ++ R ++
Sbjct: 269 LWHPDSCEA-VNPTRF-RAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPP 326
Query: 303 IIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNIT------TETSRMPFLMLG 356
I+ +P G E+ DD N+ E S++ L +G
Sbjct: 327 IL---------ASGPVPSPPRRGGGALHEEPELSDDDRANLMWKRYLEREDSKIVDLFVG 377
Query: 357 -----------------------LDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTE 393
L LP P + ++ LF ++ + E
Sbjct: 378 QLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFSLFTKEEELESENAPV 437
Query: 394 VVRPHVARMRYRVT------RLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYI 447
R R + R T R P+ ++LH+ RF+ + ++K+ V+FP++ L L D+
Sbjct: 438 CDR---CRQKTRSTKKLTVQRFPRILVLHLNRFSTSRGSIKKSSVGVDFPLQRLSLGDF- 493
Query: 448 PLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMV 507
++ Y L A H G G Y + + W+ D VS V
Sbjct: 494 -----ASDKAGSPVYQLYALCNHSGSVHYGHYTALC--RCQTGWHVYNDSRVSPVSENQV 546
Query: 508 ALSETYMQIYEQQQ 521
A SE Y+ Y+ Q
Sbjct: 547 ASSEGYVLFYQLMQ 560
>sp|A5PMR2|UBP33_DANRE Ubiquitin carboxyl-terminal hydrolase 33 OS=Danio rerio GN=usp33
PE=2 SV=1
Length = 897
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
Query: 405 RVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDL 464
+V LP+ + +H++RF F K T V+FP++ LE++ ++ K++ L + YDL
Sbjct: 559 KVQSLPEILCIHLKRFRHELMFSTKIGTHVSFPLEGLEMQPFLA----KDSSALTTTYDL 614
Query: 465 IANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQ 519
++ I H G G Y + + + +LWYE D V+E V +E Y+ Y++
Sbjct: 615 LSVICHHGTASSGHYIAYCRNELNQLWYEFDDQSVTEVSESCVQNAEAYVLFYKK 669
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 95/254 (37%), Gaps = 64/254 (25%)
Query: 104 DCPYLDTVNR----QVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQK--SHAYTHSL 157
DCP+L+ V +++ + + N++ACL G Y G G+ H+ HS
Sbjct: 8 DCPHLECVGEITKEELIQKSHGQCQDCKVGGPNLWACLENGCSYVGCGESHADHSTVHSQ 67
Query: 158 EAGHHVYINLRTEKVYC------------------LPDGYEINDP--------------- 184
E H++ +NL T +V+C LP+ + P
Sbjct: 68 ETRHNLTVNLTTLRVWCYACTKEVFLERKLGPHKQLPNAAKAVSPVQTPCQDLNTPGSPT 127
Query: 185 --------SLEDIRH-------------VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIP 223
+ +D+ GL NI T ++N +Q+L PL FFL
Sbjct: 128 SLRVPSAGTCDDLDMETEEEDELRTRGLTGLKNIGNTCYMNAALQALSNCPPLTQFFLEC 187
Query: 224 ENYRHC--KSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVE 281
K L + L +WH +N V P Q + KA FR Q + E
Sbjct: 188 GGLVKTDKKPALCKSYQKLITDLWH-KNRNAYVVPTNLFQGI-KAVNPMFRGYSQQDSQE 245
Query: 282 FMSWLLNTLHSDLR 295
F+ L++ LH +L+
Sbjct: 246 FLRCLMDQLHEELK 259
>sp|B2GUX4|UBP21_RAT Ubiquitin carboxyl-terminal hydrolase 21 OS=Rattus norvegicus
GN=Usp21 PE=2 SV=1
Length = 565
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 91/376 (24%), Positives = 147/376 (39%), Gaps = 72/376 (19%)
Query: 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFL-------IPENYRHCKSPLVHRFGDLTRK 243
HVGL N+ T F+N +Q L PLR+F L +P R L F D+
Sbjct: 211 HVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGR--AQELTEAFADVIGA 268
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTS 302
+WH + + V+P F +AV + F Q + EF+ L+ LH ++ R ++
Sbjct: 269 LWHPDSCEA-VNPTRF-RAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPP 326
Query: 303 IIYECFQGELEVVKEIPKNTISGNDQNTE-KGSDGGDDHDNIT------TETSRMPFLML 355
I+ +P G + E + SD DD N+ E S++ L +
Sbjct: 327 IL---------ASGPVPSPPRRGGALHEEPELSD--DDRANLMWKRYLEREDSKIVDLFV 375
Query: 356 G-----------------------LDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVT 392
G L LP P + ++ LF ++ + E
Sbjct: 376 GQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFSLFTKEEELESENAP 435
Query: 393 EVVRPHVARMRYRVTR------LPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDY 446
R R + R T+ P+ ++LH+ RF+ + ++K+ V+FP++ L L D+
Sbjct: 436 VCDR---CRQKTRSTKKLTVQRFPRILVLHLNRFSTSRGSIKKSSVGVDFPLQRLSLGDF 492
Query: 447 IPLPTPKENEKLRSK-YDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQ 505
++K+ S Y L A H G G Y + + W+ D VS
Sbjct: 493 -------ASDKVGSPVYQLYALCNHSGSVHYGHYTALC--RCQTGWHVYNDSRVSPVSEN 543
Query: 506 MVALSETYMQIYEQQQ 521
VA SE Y+ Y+ Q
Sbjct: 544 QVASSEGYVLFYQLMQ 559
>sp|Q9UK80|UBP21_HUMAN Ubiquitin carboxyl-terminal hydrolase 21 OS=Homo sapiens GN=USP21
PE=1 SV=1
Length = 565
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 140/377 (37%), Gaps = 74/377 (19%)
Query: 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFL-------IPENYRHCKSPLVHRFGDLTRK 243
HVGL N+ T F+N +Q L PLR+F L +P R L F D+
Sbjct: 211 HVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGR--AQELTEAFADVIGA 268
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTS 302
+WH + + V+P F +AV + F Q + EF+ L+ LH ++ R ++
Sbjct: 269 LWHPDSCEA-VNPTRF-RAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPP 326
Query: 303 IIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNIT------TETSRMPFLMLG 356
I+ +P G E+ DD N+ E S++ L +G
Sbjct: 327 ILAN---------GPVPSPPRRGGAL-LEEPELSDDDRANLMWKRYLEREDSKIVDLFVG 376
Query: 357 -----------------------LDLPPPPLFKDVMEKNIIPQVPLFNILKK---FDGET 390
L LP P K + FN+ K + E
Sbjct: 377 QLKSCLKCQACGYRSTTFEVFCDLSLPIP---KKGFAGGKVSLRDCFNLFTKEEELESEN 433
Query: 391 VTEVVRPHVARMRYRVTR------LPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELK 444
R R + R T+ P+ ++LH+ RF+ + ++K+ V+FP++ L L
Sbjct: 434 APVCDR---CRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLG 490
Query: 445 DYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLP 504
D+ ++ Y L A H G G Y + + W+ D VS
Sbjct: 491 DF------ASDKAGSPVYQLYALCNHSGSVHYGHYTALC--RCQTGWHVYNDSRVSPVSE 542
Query: 505 QMVALSETYMQIYEQQQ 521
VA SE Y+ Y+ Q
Sbjct: 543 NQVASSEGYVLFYQLMQ 559
>sp|Q2KJ72|UBP21_BOVIN Ubiquitin carboxyl-terminal hydrolase 21 OS=Bos taurus GN=USP21
PE=2 SV=1
Length = 565
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 90/377 (23%), Positives = 142/377 (37%), Gaps = 74/377 (19%)
Query: 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFL-------IPENYRHCKSPLVHRFGDLTRK 243
HVGL N+ T F+N +Q L PLR+F L +P R L F D+
Sbjct: 211 HVGLRNLGNTCFLNALLQCLSSTRPLRDFCLRRDFRQEVPGGGR--AQELTEAFADVIGA 268
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDL-RNTKKNTS 302
+WH + + V+P F +AV + F Q + EF+ L+ LH ++ R ++
Sbjct: 269 LWHPDSCEA-VNPTRF-RAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPP 326
Query: 303 IIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNIT------TETSRMPFLMLG 356
I+ P+ + G + SD DD N+ E S++ L +G
Sbjct: 327 ILAS------SPAPHPPR--LGGALLEEPELSD--DDRANLMWKRYLEREDSKIVDLFVG 376
Query: 357 -----------------------LDLPPPPLFKDVMEKNIIPQVPLFNILKK---FDGET 390
L LP P K + FN+ K + E
Sbjct: 377 QLKSCLKCQACGYRSTTFEVFCDLSLPIP---KKGFAGGKVSLRDCFNLFTKEEELESEN 433
Query: 391 VTEVVRPHVARMRYRVTR------LPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELK 444
R R + R T+ P+ ++LH+ RF+ + ++K+ V+FP++ L L
Sbjct: 434 APVCDR---CRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLG 490
Query: 445 DYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLP 504
D+ ++ Y L A H G G Y + + W+ D VS
Sbjct: 491 DF------ASDKAGSPVYQLYALCNHSGSVHYGHYTALC--RCQTGWHVYNDSRVSPVSE 542
Query: 505 QMVALSETYMQIYEQQQ 521
VA SE Y+ Y+ Q
Sbjct: 543 NQVASSEGYVLFYQLMQ 559
>sp|Q9P275|UBP36_HUMAN Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo sapiens GN=USP36
PE=1 SV=3
Length = 1121
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 138/339 (40%), Gaps = 53/339 (15%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHA-RNF 250
GL+N+ T F+N TIQ L PL N+ L E+ R C + I A N
Sbjct: 122 AGLHNLGNTCFLNATIQCLTYTPPLANYLLSKEHARSCHQGSFCMLCVMQNHIVQAFANS 181
Query: 251 KGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLH-------SDLRNTKKNTSI 303
+ P F++ + K + + FR G Q + EF+ + ++ + + L + T++
Sbjct: 182 GNAIKPVSFIRDLKKIA-RHFRFGNQEDAHEFLRYTIDAMQKACLNGCAKLDRQTQATTL 240
Query: 304 IYECFQGELEV-VKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPP 362
+++ F G L VK ++S D +D P+L + L++
Sbjct: 241 VHQIFGGYLRSRVKCSVCKSVS-------------DTYD---------PYLDVALEI--- 275
Query: 363 PLFKDVMEKNIIPQVPLF---NILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRR 419
NI+ + LF ++L + + + A R+ + R + L ++R
Sbjct: 276 -----RQAANIVRALELFVKADVLSGENAYMCAKCKKKVPASKRFTIHRTSNVLTLSLKR 330
Query: 420 FTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDG-KPEGGF 478
F NF K V +P + L ++ Y+ +N Y L A +VH G G
Sbjct: 331 FA--NFSGGKITKDVGYP-EFLNIRPYM-----SQNNGDPVMYGLYAVLVHSGYSCHAGH 382
Query: 479 YRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIY 517
Y +V + S WY+M D V + ++V + Y+ Y
Sbjct: 383 YYCYV-KASNGQWYQMNDSLVHSSNVKVVLNQQAYVLFY 420
>sp|A5PN09|UBP20_DANRE Ubiquitin carboxyl-terminal hydrolase 20 OS=Danio rerio GN=usp20
PE=2 SV=1
Length = 911
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
Query: 405 RVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDL 464
+V RLP+ + +H++RF + K + V+FP++ L+LK ++ KE+ + YDL
Sbjct: 574 KVLRLPEILCIHLKRFRHEVMYSFKINSHVSFPLEGLDLKPFLA----KESPSQITTYDL 629
Query: 465 IANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQ 519
++ I H G G Y + Q WYE D +V+E +V +E Y+ Y +
Sbjct: 630 LSVICHHGTAGSGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNAEAYVLFYRK 684
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 99/265 (37%), Gaps = 63/265 (23%)
Query: 105 CPYLDT---VNRQVLDFDFEKFC-SVSLSNLNVYACLVCGKYYQGRGQK--SHAYTHSLE 158
CP+LD+ V ++ L + C S + N++ACL C Y G G+ H+ H+
Sbjct: 8 CPHLDSIGEVTKEELIQKSKGTCQSCGVGGPNLWACLQCDCPYVGCGESYSDHSTIHAQA 67
Query: 159 AGHHVYINLRTEKVYCLPDGYEI--------------------NDPSLEDIRH------- 191
H++ +NL T +V+C E+ DP + +
Sbjct: 68 KKHNLTVNLTTFRVWCYVCEREVFLEPKPVTPVSSAHRCKPHDQDPVSQTTCYPLKAVPI 127
Query: 192 --------------------VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY-RHCK 230
G+ NI + ++N +Q+L PL FF R K
Sbjct: 128 AVADEEGSESEEDELKPRGLTGMKNIGNSCYMNAALQALSNCPPLTQFFQDCSGLVRTDK 187
Query: 231 SP-LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNT 289
P L + L ++WH + V P + K FR Q + EF+ L++
Sbjct: 188 KPALCKSYQKLISELWHKKR-PSYVVPTTLFHGI-KLVNPMFRGYAQQDTQEFLRCLMDQ 245
Query: 290 LHSDLRNTKKNTSIIYECFQGELEV 314
LH +L+ +++C G EV
Sbjct: 246 LHEELKEP------LFDCSGGISEV 264
>sp|Q5REG5|UBP33_PONAB Ubiquitin carboxyl-terminal hydrolase 33 OS=Pongo abelii GN=USP33
PE=2 SV=1
Length = 914
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 405 RVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDL 464
+V + P+ + +H++RF F K T V+FP++ L+L+ ++ +P + YDL
Sbjct: 572 KVQKFPEILCIHLKRFRHELMFSTKISTHVSFPLEGLDLQPFLAKDSPAQ----IVTYDL 627
Query: 465 IANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQ 519
++ I H G G Y + + LWYE D V+E V +E Y+ Y +
Sbjct: 628 LSVICHHGTASSGHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQNAEAYVLFYRK 682
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 97/255 (38%), Gaps = 63/255 (24%)
Query: 102 RRDCPYLDTV---NRQVLDFDFEKFCS-VSLSNLNVYACLV--CGKYYQGRGQKSHAYTH 155
R CP+LD+V ++ L + C + N++ACL C G Q H+ H
Sbjct: 5 RNHCPHLDSVGEITKEDLIQKSQGTCQDCKVRGPNLWACLENRCSYVGCGESQVDHSTIH 64
Query: 156 SLEAGHHVYINLRTEKVYCLPDGYEI-------NDPSLEDIRH----------------- 191
S E H++ +NL T +V+C E+ PSL +R
Sbjct: 65 SQETKHYLTVNLTTLRVWCYACSKEVFLDRKLGTQPSLPHVRQPHQIQENSVQDFKIPSN 124
Query: 192 -----------------------------VGLNNIKETDFVNVTIQSLMRVTPLRNFFLI 222
GL NI T ++N +Q+L PL FFL
Sbjct: 125 TTLKTPLVAVFDDLDIEVDEEDELRARGLTGLKNIGNTCYMNAALQALSNCPPLTQFFLD 184
Query: 223 PENY-RHCKSPLVHR-FGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPV 280
R K P + + + L ++WH ++ G V P Q + K FR Q +
Sbjct: 185 CGGLARTDKKPAICKSYLKLMTELWH-KSRPGSVVPTNLFQGI-KTVNPTFRGYSQQDAQ 242
Query: 281 EFMSWLLNTLHSDLR 295
EF+ L++ LH +L+
Sbjct: 243 EFLRCLMDLLHEELK 257
>sp|Q28CN3|UBP33_XENTR Ubiquitin carboxyl-terminal hydrolase 33 OS=Xenopus tropicalis
GN=usp33 PE=2 SV=1
Length = 892
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 405 RVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDL 464
+V + P+ + +H++RF F K T V+FP++ L+L+ ++ +P + YDL
Sbjct: 554 KVQKFPEILCIHLKRFRHELMFSTKIGTHVSFPLEGLDLQPFLAKDSPSQ----IVTYDL 609
Query: 465 IANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQ 519
++ I H G G Y + + LWYE D V+E V +E Y+ Y +
Sbjct: 610 LSVICHHGTASSGHYIAYCRNNLNNLWYEFDDQSVTEVSEATVQNAEAYVLFYRK 664
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 95/249 (38%), Gaps = 61/249 (24%)
Query: 104 DCPYLDTVNRQVLDFDFEKF------CSVSLSNLNVYACLVCGKYYQGRGQK--SHAYTH 155
DCP+L++V + +K C V NL +ACL G Y G G+ H+ H
Sbjct: 7 DCPHLESVGEVTKEELIKKSHGSCQDCRVRGPNL--WACLENGCSYVGCGESHVDHSTLH 64
Query: 156 SLEAGHHVYINLRTEKVYCL---------------PDGYEINDPSLEDIRH--------- 191
S + H + +NL T +V+C P ++ D ++ +
Sbjct: 65 SQDTKHCLTVNLTTLRVWCYTCSKEVFLDRKLSTQPTSAKLQDSHTQESKMSSSLTLKIP 124
Query: 192 -----------------------VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRH 228
GL NI T ++N +Q+L PL ++FL
Sbjct: 125 AAVVSENLDIELEEEDELKTRGLTGLKNIGNTCYMNAALQALSNCPPLTHYFLDCGGLAR 184
Query: 229 C--KSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWL 286
K L + L IWH +N G V P Q + K+ FR Q + EF+ L
Sbjct: 185 TDKKPALCKSYQKLMSDIWH-KNRPGFVIPTNLFQGI-KSVNPTFRGYSQQDAQEFLRCL 242
Query: 287 LNTLHSDLR 295
++ LH +L+
Sbjct: 243 MDVLHEELK 251
>sp|Q8R5K2|UBP33_MOUSE Ubiquitin carboxyl-terminal hydrolase 33 OS=Mus musculus GN=Usp33
PE=1 SV=2
Length = 909
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 405 RVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDL 464
+V + P+ + +H++RF F K T V+FP++ L+L+ ++ +P + YDL
Sbjct: 571 KVQKFPEILCIHLKRFRHELMFSTKISTHVSFPLEGLDLQPFLAKDSPAQ----IVTYDL 626
Query: 465 IANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQ 519
++ I H G G Y + + LWYE D V+E V +E Y+ Y +
Sbjct: 627 LSVICHHGTASSGHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQNAEAYVLFYRK 681
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 97/261 (37%), Gaps = 67/261 (25%)
Query: 98 LVEVRRDCPYLDTVNRQVLDFDFEKF------CSVSLSNLNVYACLV--CGKYYQGRGQK 149
+ R CP+LD+V + +K C V NL +ACL C G Q
Sbjct: 1 MTTFRNHCPHLDSVGEITKEDLIQKSLGACQDCKVRGPNL--WACLENRCSYVGCGESQV 58
Query: 150 SHAYTHSLEAGHHVYINLRTEKVYCLPDGYEI-------NDPSLEDIRH----------- 191
H+ HS E H++ +NL T +V+C E+ PSL +R
Sbjct: 59 DHSTIHSQETKHYLTVNLTTLRVWCYACSKEVFLDRKLGTPPSLPHVRQPQQTQENSVQD 118
Query: 192 -----------------------------------VGLNNIKETDFVNVTIQSLMRVTPL 216
GL NI T ++N +Q+L PL
Sbjct: 119 FKIPSNPALKTPMVAVSEDLDIEVEEEDELKARGLTGLKNIGNTCYMNAALQALSNCPPL 178
Query: 217 RNFFLIPENY-RHCKSPLVHR-FGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIG 274
FFL R K P + + + L ++WH ++ G V P Q + K FR
Sbjct: 179 TQFFLDCGGLARTDKKPAICKSYLKLMTELWH-KSRPGSVVPANLFQGI-KTVNPTFRGY 236
Query: 275 VQSNPVEFMSWLLNTLHSDLR 295
Q + EF+ L++ LH +L+
Sbjct: 237 SQQDAQEFLRCLMDLLHEELK 257
>sp|P51784|UBP11_HUMAN Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo sapiens GN=USP11
PE=1 SV=3
Length = 963
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Query: 398 HVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEK 457
+A + + LP+ +I+H++RF+ F EK TLV FP+++L+ +++ P + N +
Sbjct: 809 QLATKKLDLWMLPEILIIHLKRFSYTKFSREKLDTLVEFPIRDLDFSEFVIQPQNESNPE 868
Query: 458 LRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIY 517
L KYDLIA H G G Y F K W+ D VS + Y+ Y
Sbjct: 869 L-YKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFY 927
Query: 518 EQQ 520
++Q
Sbjct: 928 QRQ 930
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 84/204 (41%), Gaps = 24/204 (11%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFL----IPE-NYRH---CKSPLVHRFGDLTRK 243
GL N+ T F+N +Q L V L +FL + E N+R+ K + + DL ++
Sbjct: 309 CGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEAYADLVKQ 368
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKN--T 301
W + + PH F V + + F Q + E +S+LL+ LH DL KK
Sbjct: 369 AWSGHH--RSIVPHVFKNKVGHFASQ-FLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYV 425
Query: 302 SIIYECFQGELEVVKEIPKNTISGND-------QNTEKGSDGGDDHDNITTETSRMPFLM 354
+ + + EV +E +N ND K + D N++ PF
Sbjct: 426 ELCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFD--PFCY 483
Query: 355 LGLDLPPPPLFKDVMEKNIIPQVP 378
L +P P K V+E IP P
Sbjct: 484 LS--VPLPISHKRVLEVFFIPMDP 505
>sp|B1WBD7|UBP20_XENLA Ubiquitin carboxyl-terminal hydrolase 20 OS=Xenopus laevis GN=usp20
PE=2 SV=1
Length = 840
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 405 RVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDL 464
+V RLP+ + +H++RF + K + V+FP++ L L+ ++ KE + YDL
Sbjct: 500 KVLRLPEVLCIHLKRFRHEVMYSFKIGSHVSFPLEGLNLRPFLA----KECVSRITTYDL 555
Query: 465 IANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQ 519
+A I H G G Y + Q WYE D +V+E +V +E Y+ Y +
Sbjct: 556 LAVICHHGSASSGHYISYCQNVINGQWYEFDDQYVTEVHETVVQNAEAYVLFYRK 610
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 16/202 (7%)
Query: 105 CPYLDT---VNRQVLDFDFEKFC-SVSLSNLNVYACLVCGKYYQGRGQK--SHAYTHSLE 158
CP+LD+ V ++ L + C S + N++ACL G G G+ H+ H+ +
Sbjct: 8 CPHLDSIGEVTKEDLILKSKGTCESCGVGGPNLWACLQDGCQSVGCGESYADHSTLHAQD 67
Query: 159 AGHHVYINLRTEKVYCLPDGYEINDPSLEDIR---HVGLNNIKETDFVNVTIQSLMRVTP 215
+ L++ + DG +D +DI+ G+ NI + ++N +Q+L P
Sbjct: 68 FPSPAH-PLKSVPIAVGDDGESESDE--DDIKPRGLTGMKNIGNSCYMNAALQALSNCPP 124
Query: 216 LRNFFL-IPENYRHCKSP-LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRI 273
L FFL R K P L + L ++WH + V P + K FR
Sbjct: 125 LTQFFLECGGLVRTDKKPALCKSYQKLVSELWHKKR-PSYVVPSSLYHGI-KLINPLFRG 182
Query: 274 GVQSNPVEFMSWLLNTLHSDLR 295
Q + EF+ L++ LH +L+
Sbjct: 183 YSQQDTQEFLRCLMDQLHEELK 204
>sp|A0JM59|UBP20_XENTR Ubiquitin carboxyl-terminal hydrolase 20 OS=Xenopus tropicalis
GN=usp20 PE=2 SV=1
Length = 884
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 405 RVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDL 464
+V RLP+ + +H++RF + K + V+FP++ L L+ ++ KE + YDL
Sbjct: 544 KVLRLPEILCIHLKRFRHEVMYSFKIGSHVSFPLEGLNLRPFLA----KECVSRITTYDL 599
Query: 465 IANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQ 519
+A I H G G Y + Q WYE D +V+E +V +E Y+ Y +
Sbjct: 600 LAVICHHGSASSGHYISYCQNVINGQWYEFDDQYVTEVHETVVQNAEAYVLFYRK 654
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 94/243 (38%), Gaps = 54/243 (22%)
Query: 105 CPYLDT---VNRQVLDFDFEKFC-SVSLSNLNVYACLVCGKYYQGRGQK--SHAYTHSLE 158
CP+LD+ V ++ L + C S + N++ACL G G G+ H+ H+
Sbjct: 8 CPHLDSIGEVTKEDLILKSKGTCESCGVGGPNLWACLQDGCQSVGCGESYVDHSTLHAQA 67
Query: 159 AGHHVYINLRTEKVYCL------------PDGYEINDPSL-------------------- 186
H++ +NL T +V+C P + P L
Sbjct: 68 KKHNLTVNLTTFRVWCYACEKEVFLDPRGPPASQTTSPRLSHRDFPTSAHPLKSVPIAVG 127
Query: 187 ---------EDIRH---VGLNNIKETDFVNVTIQSLMRVTPLRNFFL-IPENYRHCKSP- 232
+DI+ G+ NI + ++N +Q+L PL FFL R K P
Sbjct: 128 DDGESESDEDDIKPRGLTGMKNIGNSCYMNAALQALSNCPPLTQFFLECGGLVRTDKKPA 187
Query: 233 LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHS 292
L + L ++WH + V P + K FR Q + EF+ L++ LH
Sbjct: 188 LCKSYQKLISELWHKKR-PSYVVPSSLYHGI-KLINPLFRGYSQQDTQEFLRCLMDQLHE 245
Query: 293 DLR 295
+L+
Sbjct: 246 ELK 248
>sp|A6QNM7|UBP33_BOVIN Ubiquitin carboxyl-terminal hydrolase 33 OS=Bos taurus GN=USP33
PE=2 SV=1
Length = 912
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 405 RVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDL 464
+V + P+ + +H++RF F K T V+FP++ L+L+ ++ +P + YDL
Sbjct: 574 KVQKFPEILCIHLKRFRHELMFSTKISTHVSFPLEGLDLQPFLAKDSPVQ----IVTYDL 629
Query: 465 IANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQ 519
++ I H G G Y + + LWYE D V+E V +E Y+ Y +
Sbjct: 630 LSVICHHGTASSGHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQNAEAYVLFYRK 684
Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 97/257 (37%), Gaps = 67/257 (26%)
Query: 102 RRDCPYLDTVNRQVLDFDFEKF------CSVSLSNLNVYACLV--CGKYYQGRGQKSHAY 153
R CP+LD+V + +K C V NL +ACL C G Q H+
Sbjct: 5 RSHCPHLDSVGEITKEDLIQKSHGSCQDCKVRGPNL--WACLENRCSYVGCGESQVDHST 62
Query: 154 THSLEAGHHVYINLRTEKVYCLPDGYEI-------NDPSLEDIRHV-------------- 192
HS E H++ +NL T +V+C E+ PSL ++ +
Sbjct: 63 IHSQETKHYLTVNLTTLRVWCYACSKEVFLDRKLGTQPSLPHVKPLHQIQENGVQDFKIP 122
Query: 193 --------------------------------GLNNIKETDFVNVTIQSLMRVTPLRNFF 220
GL NI T ++N +Q+L PL FF
Sbjct: 123 SNTTLKTPLVAVFDDLDIEVEEEDELKARGLTGLKNIGNTCYMNAALQALSNCPPLTQFF 182
Query: 221 LIPENY-RHCKSPLVHR-FGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSN 278
L R K P + + + L ++WH ++ G V P Q + K FR Q +
Sbjct: 183 LDCGGLARTDKKPAICKSYLKLMTELWH-KSRPGSVVPTTLFQGI-KTVNPTFRGYSQQD 240
Query: 279 PVEFMSWLLNTLHSDLR 295
EF+ L++ LH +L+
Sbjct: 241 AQEFLRCLMDLLHEELK 257
>sp|A7Z056|UBP20_BOVIN Ubiquitin carboxyl-terminal hydrolase 20 OS=Bos taurus GN=USP20
PE=2 SV=1
Length = 912
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Query: 405 RVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDL 464
+V RLP+ + +H++RF + K + V+FP++ L+L+ ++ KE + YDL
Sbjct: 572 KVLRLPEILCIHLKRFRHEVMYSFKISSHVSFPLEGLDLRPFLA----KECTSQITTYDL 627
Query: 465 IANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQ 519
++ I H G G Y + Q WYE D +V+E +V +E Y+ Y +
Sbjct: 628 LSVICHHGTAGSGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNAEAYVLFYRK 682
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 93/243 (38%), Gaps = 54/243 (22%)
Query: 105 CPYLDT---VNRQVLDFDFEKFC-SVSLSNLNVYACLVCGKYYQGRGQK--SHAYTHSLE 158
CP+LD+ V ++ L + C S +S N++ACL Y G G+ H+ H+
Sbjct: 8 CPHLDSIGEVTKEDLLLKSKSTCQSCGVSGPNLWACLQVSCSYVGCGESFADHSTLHAQA 67
Query: 159 AGHHVYINLRTEKVYCL---------------PDG------------------------- 178
H++ +NL T +V+C P G
Sbjct: 68 KKHNLTVNLTTFRVWCYACEKEVFLEPRLAAHPPGPAPKFSEQDSPPPSHPLKAVPIAVA 127
Query: 179 ----YEINDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFL-IPENYRHCKSP- 232
E D L+ G+ N+ + ++N +Q+L PL FFL R K P
Sbjct: 128 DEGESESEDDDLKPRGLTGMKNLGNSCYMNAALQALSNCPPLTQFFLECGGLVRTDKKPA 187
Query: 233 LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHS 292
L + L ++WH R V P + K FR Q + EF+ L++ LH
Sbjct: 188 LCKSYQKLVSEVWH-RKRPSYVVPTSLSHGI-KLVNPMFRGYAQQDTQEFLRCLMDQLHE 245
Query: 293 DLR 295
+L+
Sbjct: 246 ELK 248
>sp|Q8TEY7|UBP33_HUMAN Ubiquitin carboxyl-terminal hydrolase 33 OS=Homo sapiens GN=USP33
PE=1 SV=2
Length = 942
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 98/262 (37%), Gaps = 67/262 (25%)
Query: 97 RLVEVRRDCPYLDTVNRQVLDFDFEKF------CSVSLSNLNVYACLV--CGKYYQGRGQ 148
++ R CP+LD+V + +K C V NL +ACL C G Q
Sbjct: 31 KMSAFRNHCPHLDSVGEITKEDLIQKSLGTCQDCKVQGPNL--WACLENRCSYVGCGESQ 88
Query: 149 KSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEI-------NDPSLEDIRH---------- 191
H+ HS E H++ +NL T +V+C E+ PSL +R
Sbjct: 89 VDHSTIHSQETKHYLTVNLTTLRVWCYACSKEVFLDRKLGTQPSLPHVRQPHQIQENSVQ 148
Query: 192 ------------------------------------VGLNNIKETDFVNVTIQSLMRVTP 215
GL NI T ++N +Q+L P
Sbjct: 149 DFKIPSNTTLKTPLVAVFDDLDIEADEEDELRARGLTGLKNIGNTCYMNAALQALSNCPP 208
Query: 216 LRNFFLIPENY-RHCKSPLVHR-FGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRI 273
L FFL R K P + + + L ++WH ++ G V P Q + K FR
Sbjct: 209 LTQFFLDCGGLARTDKKPAICKSYLKLMTELWH-KSRPGSVVPTTLFQGI-KTVNPTFRG 266
Query: 274 GVQSNPVEFMSWLLNTLHSDLR 295
Q + EF+ L++ LH +L+
Sbjct: 267 YSQQDAQEFLRCLMDLLHEELK 288
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 405 RVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDL 464
+V P+ + +H++RF F K T V+FP++ L+L+ ++ +P + YDL
Sbjct: 604 KVQNFPEILCIHLKRFRHELMFSTKISTHVSFPLEGLDLQPFLAKDSPAQ----IVTYDL 659
Query: 465 IANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQ 519
++ I H G G Y + + LWYE D V+E V +E Y+ Y +
Sbjct: 660 LSVICHHGTASSGHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQNAEAYVLFYRK 714
>sp|Q9FPS2|UBP25_ARATH Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabidopsis thaliana
GN=UBP25 PE=2 SV=1
Length = 661
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 146/336 (43%), Gaps = 33/336 (9%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHR------FGDLTRKIW 245
+GL N+ T ++N +Q L PL NF L ++ HC + + F + ++I
Sbjct: 24 LGLRNLGNTCYLNSVLQCLTFTPPLANFCLTHKHSSHCDTYVDGERKRDCPFCIVEKRIA 83
Query: 246 HARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIY 305
+ + + + +K + F++G Q + EF+ ++++ H+ KK
Sbjct: 84 RSLSVDLTTDAPNKISSCLKIFAEHFKLGRQEDAHEFLRYVIDACHNTSLRLKKLRYNGN 143
Query: 306 ECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLM-LGLDLPPPPL 364
E F G VVKEI G Q+ K G E+++ +M + L++
Sbjct: 144 EPFNGN-SVVKEI----FGGALQSQVKCLSCG-------AESNKADEIMDISLEILQSSS 191
Query: 365 FKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNN 424
K+ ++K Q + + K+ E+ ++V AR + + + P +++ ++RF
Sbjct: 192 VKESLQKFF--QSEILDGNNKYRCESCEKLV---TARKQMSILQAPNILVIQLKRF--GG 244
Query: 425 FFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDG-KPEGGFYRVFV 483
F K ++F + L L +++ K ++ + +Y L IVH G PE G Y +V
Sbjct: 245 IFGGKIDKAISFG-EILVLSNFM----SKASKDPQPEYKLFGIIVHSGFSPESGHYYAYV 299
Query: 484 QRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQ 519
+ S WY D VS + Q V + Y+ + +
Sbjct: 300 -KDSLGRWYCCNDSFVSLSTLQEVLSEKAYILFFSR 334
>sp|E1B9W9|UBP42_BOVIN Ubiquitin carboxyl-terminal hydrolase 42 OS=Bos taurus GN=USP42
PE=3 SV=1
Length = 1333
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/338 (23%), Positives = 136/338 (40%), Gaps = 51/338 (15%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFK 251
GL N+ T F N +Q L PL N+ L E+ + C + + I A +
Sbjct: 111 AGLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQAHITQALSNP 170
Query: 252 GQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK-------KNTSII 304
G V F+ M+ + FR G Q + EF+ + ++ + N + T+++
Sbjct: 171 GDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSNKLDRHTQATTLV 230
Query: 305 YECFQGELEV-VKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPP 363
+ F G L VK + N + SD D P+L + L++
Sbjct: 231 CQIFGGYLRSRVKCL----------NCKGVSDTFD------------PYLDITLEIKAAQ 268
Query: 364 LFKDVMEKNIIPQVPLFNILKKFDGET---VTEVVRPHVARMRYRVTRLPKYMILHMRRF 420
+E+ + P+ + DGE ++ + A R+ + R + L ++RF
Sbjct: 269 SVNKALEQFVKPE--------QLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTLSLKRF 320
Query: 421 TKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDG-KPEGGFY 479
NF K V +P + L+++ Y+ P E + Y L A +VH G G Y
Sbjct: 321 A--NFTGGKIAKDVKYP-EYLDIRPYMSQPN---GEPI--IYVLYAVLVHTGFNCHAGHY 372
Query: 480 RVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIY 517
++ + S LWY+M D VS + + V + Y+ Y
Sbjct: 373 FCYI-KASNGLWYQMNDSIVSTSDIRSVLSQQAYVLFY 409
>sp|B2RQC2|UBP42_MOUSE Ubiquitin carboxyl-terminal hydrolase 42 OS=Mus musculus GN=Usp42
PE=2 SV=1
Length = 1324
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 136/338 (40%), Gaps = 51/338 (15%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFK 251
GL N+ T F N +Q L PL N+ L E+ + C + + I A +
Sbjct: 110 AGLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQTHITQALSNP 169
Query: 252 GQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK-------KNTSII 304
G V F+ M+ + FR G Q + EF+ + ++ + N + T+++
Sbjct: 170 GDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSNKLDRHTQATTLV 229
Query: 305 YECFQGELEV-VKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPP 363
+ F G L VK + N + SD D P+L + L++
Sbjct: 230 CQIFGGYLRSRVKCL----------NCKGVSDTFD------------PYLDITLEIKAAQ 267
Query: 364 LFKDVMEKNIIPQVPLFNILKKFDGET---VTEVVRPHVARMRYRVTRLPKYMILHMRRF 420
+E+ + P+ + DGE ++ + A R+ + R + + ++RF
Sbjct: 268 SVTKALEQFVKPE--------QLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTISLKRF 319
Query: 421 TKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDG-KPEGGFY 479
NF K V +P + L+++ Y+ P E + Y L A +VH G G Y
Sbjct: 320 A--NFTGGKIAKDVKYP-EYLDIRPYMSQPN---GEPI--IYVLYAVLVHTGFNCHAGHY 371
Query: 480 RVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIY 517
++ + S LWY+M D VS + + V + Y+ Y
Sbjct: 372 FCYI-KASNGLWYQMNDSIVSTSDIRAVLNQQAYVLFY 408
>sp|Q5R5Z6|UBP20_PONAB Ubiquitin carboxyl-terminal hydrolase 20 OS=Pongo abelii GN=USP20
PE=2 SV=1
Length = 913
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Query: 405 RVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDL 464
+V RLP+ + +H++RF + K + V+FP++ L+L+ ++ KE + YDL
Sbjct: 573 KVLRLPEILCIHLKRFRHEVMYSFKINSHVSFPLEGLDLRPFLA----KECTSQITTYDL 628
Query: 465 IANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQ 519
++ I H G G Y + Q WYE D +V+E +V +E Y+ Y +
Sbjct: 629 LSVICHHGTAGSGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNAEGYVLFYRK 683
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 94/253 (37%), Gaps = 53/253 (20%)
Query: 105 CPYLDT---VNRQVLDFDFEKFC-SVSLSNLNVYACLVCGKYYQGRGQK--SHAYTHSLE 158
CP+LD+ V ++ L C S ++ N++ACL Y G G+ H+ H+
Sbjct: 8 CPHLDSIGEVTKEDLLLKSMGTCQSCGVTGPNLWACLQVACPYVGCGESFADHSTIHAQA 67
Query: 159 AGHHVYINLRTEKVYCLPDGYEI------------------------------------- 181
H++ +NL T +++C E+
Sbjct: 68 KKHNLTVNLTTFRLWCYACEKEVFLEQRLAAPLLGSSKFSEQDSPPPSHPLKAVPIAVAD 127
Query: 182 ------NDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFL-IPENYRHCKSP-L 233
D L+ G+ N+ + ++N +Q+L PL FFL R K P L
Sbjct: 128 EGESESEDDDLKPRGLTGMKNLGNSCYMNAALQALSNCPPLTQFFLECGGLVRTDKKPAL 187
Query: 234 VHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSD 293
+ L ++WH + V P + K FR Q + EF+ L++ LH +
Sbjct: 188 CKSYQKLVSEVWHKKR-PSYVVPTSLSHGI-KLVNPMFRGYAQQDTQEFLRCLMDQLHEE 245
Query: 294 LRNTKKNTSIIYE 306
L+ T + E
Sbjct: 246 LKEPVVATVALTE 258
>sp|Q9Y2K6|UBP20_HUMAN Ubiquitin carboxyl-terminal hydrolase 20 OS=Homo sapiens GN=USP20
PE=1 SV=2
Length = 914
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Query: 405 RVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDL 464
+V RLP+ + +H++RF + K + V+FP++ L+L+ ++ KE + YDL
Sbjct: 574 KVLRLPEILCIHLKRFRHEVMYSFKINSHVSFPLEGLDLRPFLA----KECTSQITTYDL 629
Query: 465 IANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQ 519
++ I H G G Y + Q WYE D +V+E +V +E Y+ Y +
Sbjct: 630 LSVICHHGTAGSGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNAEGYVLFYRK 684
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 95/254 (37%), Gaps = 54/254 (21%)
Query: 105 CPYLDT---VNRQVLDFDFEKFC-SVSLSNLNVYACLVCGKYYQGRGQK--SHAYTHSLE 158
CP+LD+ V ++ L + C S ++ N++ACL Y G G+ H+ H+
Sbjct: 8 CPHLDSIGEVTKEDLLLKSKGTCQSCGVTGPNLWACLQVACPYVGCGESFADHSTIHAQA 67
Query: 159 AGHHVYINLRTEKVYCLPDGYEI------------------------------------- 181
H++ +NL T +++C E+
Sbjct: 68 KKHNLTVNLTTFRLWCYACEKEVFLEQRLAAPLLGSSSKFSEQDSPPPSHPLKAVPIAVA 127
Query: 182 -------NDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFL-IPENYRHCKSP- 232
D L+ G+ N+ + ++N +Q+L PL FFL R K P
Sbjct: 128 DEGESESEDDDLKPRGLTGMKNLGNSCYMNAALQALSNCPPLTQFFLECGGLVRTDKKPA 187
Query: 233 LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHS 292
L + L ++WH + V P + K FR Q + EF+ L++ LH
Sbjct: 188 LCKSYQKLVSEVWHKKR-PSYVVPTSLSHGI-KLVNPMFRGYAQQDTQEFLRCLMDQLHE 245
Query: 293 DLRNTKKNTSIIYE 306
+L+ T + E
Sbjct: 246 ELKEPVVATVALTE 259
>sp|Q9H9J4|UBP42_HUMAN Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens GN=USP42
PE=1 SV=3
Length = 1324
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/338 (23%), Positives = 136/338 (40%), Gaps = 51/338 (15%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFK 251
GL N+ T F N +Q L PL N+ L E+ + C + + I A +
Sbjct: 111 AGLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQAHITQALSNP 170
Query: 252 GQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK-------KNTSII 304
G V F+ M+ + FR G Q + EF+ + ++ + N + T+++
Sbjct: 171 GDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSNKLDRHTQATTLV 230
Query: 305 YECFQGELEV-VKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPP 363
+ F G L VK + N + SD D P+L + L++
Sbjct: 231 CQIFGGYLRSRVKCL----------NCKGVSDTFD------------PYLDITLEIKAAQ 268
Query: 364 LFKDVMEKNIIPQVPLFNILKKFDGET---VTEVVRPHVARMRYRVTRLPKYMILHMRRF 420
+E+ + P+ + DGE ++ + A R+ + R + L ++RF
Sbjct: 269 SVNKALEQFVKPE--------QLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTLSLKRF 320
Query: 421 TKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDG-KPEGGFY 479
NF K V +P + L+++ Y+ P E + Y L A +VH G G Y
Sbjct: 321 A--NFTGGKIAKDVKYP-EYLDIRPYMSQPN---GEPI--VYVLYAVLVHTGFNCHAGHY 372
Query: 480 RVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIY 517
++ + S LWY+M D VS + + V + Y+ Y
Sbjct: 373 FCYI-KASNGLWYQMNDSIVSTSDIRSVLSQQAYVLFY 409
>sp|Q9FPS4|UBP23_ARATH Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana
GN=UBP23 PE=2 SV=2
Length = 859
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/335 (22%), Positives = 135/335 (40%), Gaps = 43/335 (12%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFK 251
GL N+ T F+N +Q L PL + ++C + + + AR
Sbjct: 107 AGLQNLGNTCFLNSVLQCLTYTEPLAATLQTAAHQKYCHVAGFCALCAIQKHVRTARQAN 166
Query: 252 GQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLH-----SDLRNTKKNT---SI 303
G++ + L + ++ + FR Q + E+M LL +H S + + + S+
Sbjct: 167 GRILAPKDLVSNLRCISRNFRNCRQEDAHEYMINLLECMHKCSLPSGVPSESSDAYRRSL 226
Query: 304 IYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPP 363
+++ F G L + E+ S + D PFL L LD+
Sbjct: 227 VHKIFGGSLR------------SQVKCEQCSHCSNKFD---------PFLDLSLDISKAD 265
Query: 364 LFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKN 423
+ + + ++ L N K + E + V+ A+ + V++ P + +H++RF +
Sbjct: 266 SLQRALSRFTAVEL-LDNGAKVYQCERCKQKVK---AKKQLTVSKAPYVLTVHLKRFEAH 321
Query: 424 NFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPE-GGFYRVF 482
EK V+F +++K ++ P + KY L +VH G+ G Y F
Sbjct: 322 R--SEKIDRKVDF-TSAIDMKPFVSGP-----HEGNLKYTLYGVLVHYGRSSHSGHYACF 373
Query: 483 VQRKSEELWYEMQDLHVSETLPQMVALSETYMQIY 517
V R S +WY + D V + + V + YM Y
Sbjct: 374 V-RTSSGMWYSLDDNRVVQVSEKTVFNQKAYMLFY 407
>sp|D3ZU96|UBP42_RAT Ubiquitin carboxyl-terminal hydrolase 42 OS=Rattus norvegicus
GN=Usp42 PE=3 SV=1
Length = 1325
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 136/338 (40%), Gaps = 51/338 (15%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFK 251
GL N+ T F N +Q L PL N+ L E+ + C + + I A +
Sbjct: 110 AGLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQTHITQALSNP 169
Query: 252 GQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK-------KNTSII 304
G V F+ M+ + FR G Q + EF+ + ++ + N + T+++
Sbjct: 170 GDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSNKLDRHTQATTLV 229
Query: 305 YECFQGELEV-VKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPP 363
+ F G L VK + N + SD D P+L + L++
Sbjct: 230 CQIFGGYLRSRVKCL----------NCKGVSDTFD------------PYLDITLEIKAAQ 267
Query: 364 LFKDVMEKNIIPQVPLFNILKKFDGET---VTEVVRPHVARMRYRVTRLPKYMILHMRRF 420
+E+ + P+ + DGE ++ + A R+ + R + + ++RF
Sbjct: 268 SVTKALEQFVKPE--------QLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTISLKRF 319
Query: 421 TKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDG-KPEGGFY 479
NF K V +P + L+++ Y+ P E + Y L A +VH G G Y
Sbjct: 320 A--NFTGGKIAKDVKYP-EYLDIRPYMSQPN---GEPI--IYVLYAVLVHTGFNCHAGHY 371
Query: 480 RVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIY 517
++ + S LWY+M D VS + + V + Y+ Y
Sbjct: 372 FCYI-KASNGLWYQMNDSIVSTSDIRSVLNQQAYVLFY 408
>sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2
SV=1
Length = 963
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 400 ARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLR 459
A ++ + LPK +++H++RF+ N ++ +K T+V FPV+ L + +++ P+ +
Sbjct: 808 ATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRGLNMSEFVCDPSARP----- 862
Query: 460 SKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQ 519
YDLIA H G G Y + + K WY D +VS + Y+ Y++
Sbjct: 863 YVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLACEDQIVTKAAYVLFYQR 922
Query: 520 Q 520
+
Sbjct: 923 R 923
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 87/203 (42%), Gaps = 22/203 (10%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPE--------NYRHCKSPLVHRFGDLTRK 243
GL N+ T F+N +Q L PL ++FL E N K + + +L ++
Sbjct: 302 CGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQ 361
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSI 303
+W R+ V+P F V + + + F Q + E +++LL+ LH DL KK +
Sbjct: 362 MWSGRD--AHVAPRMFKTQVGRFAPQ-FSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYL 418
Query: 304 IYECFQG--ELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRM-----PFLMLG 356
+ G + V KE +N ND G + E +++ PF L
Sbjct: 419 ELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLT 478
Query: 357 LDLPPPPLFKD-VMEKNIIPQVP 378
L P PL KD VME ++P P
Sbjct: 479 L---PLPLKKDRVMEIFLVPADP 498
>sp|Q9FPS3|UBP24_ARATH Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabidopsis thaliana
GN=UBP24 PE=1 SV=1
Length = 551
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 86/375 (22%), Positives = 155/375 (41%), Gaps = 52/375 (13%)
Query: 184 PSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFF--LIPENYRHCKSPLVHRFGDLT 241
P ++D GL N F+N T+Q+L+ +P + ++ SP + F +
Sbjct: 189 PPVKDFTPRGLINAGNLCFLNATLQALLSCSPFVQLLQKIQLQDIPKADSPTLAAFSEFI 248
Query: 242 RK--IWHARNFKGQVSPHE----FLQAVMKASKKRFRIGV---------QSNPVEFMSWL 286
+ + + + + V+ E F A+ + + F V Q + EF+S++
Sbjct: 249 SELDVPSSSSIRNNVTVVEAGRPFRPAMFEGVLRNFTPDVLNNMSGRPRQEDAQEFLSFI 308
Query: 287 LNTLHSDL--------RNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSD--- 335
++ +H +L + T +S+I E PKN + + S+
Sbjct: 309 MDQMHDELLKLKEQSPKVTASKSSVISSANDDGDEWETVGPKNKSAVTRTQSFVPSELSE 368
Query: 336 --GGDDHDNITTETSRM-----PFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDG 388
GG + + ++ P+L+L LD+ P + + I + LF+ + +G
Sbjct: 369 IFGGQLKSVVKAKGTKASATVQPYLLLHLDIHPDGV------QGIEDALHLFSAQEDLEG 422
Query: 389 --ETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVK-NLELKD 445
+VT A ++ +L K MILH+ RF+ + K V FP++ NL
Sbjct: 423 YRASVTGKTGVVSASKSIKIQKLSKIMILHLMRFSYGSQGSTKLRKGVKFPLELNLNRSH 482
Query: 446 YIPLPTPKENEKLRSKYDLIANIVHDG-KPEGGFYRVFVQRKSEELWYEMQDLHVSETLP 504
+ L NE LR Y+L+A I H G P G Y +RK+ + W D V+
Sbjct: 483 LVSL----SNESLR--YELVATITHHGWDPSKGHYTTDARRKNGQ-WLRFDDASVTPIGT 535
Query: 505 QMVALSETYMQIYEQ 519
++V + Y+ Y+Q
Sbjct: 536 KLVLHDQAYVLFYKQ 550
>sp|B1AQJ2|UBP36_MOUSE Ubiquitin carboxyl-terminal hydrolase 36 OS=Mus musculus GN=Usp36
PE=2 SV=1
Length = 1098
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 77/339 (22%), Positives = 139/339 (41%), Gaps = 53/339 (15%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHA-RNF 250
GL+N+ T F+N TIQ L PL N+ L E+ R C + + A N
Sbjct: 122 AGLHNLGNTCFLNSTIQCLTYTPPLANYLLSKEHARSCHQGGFCMLCLMQNHMVQAFANS 181
Query: 251 KGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTL-------HSDLRNTKKNTSI 303
+ P F++ + K + + FR G Q + EF+ + ++ + ++ L + T++
Sbjct: 182 GNAIKPVSFIRDLKKIA-RHFRFGNQEDAHEFLRYTIDAMQKACLNGYAKLDRQTQATTL 240
Query: 304 IYECFQGELEV-VKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPP 362
+++ F G L VK ++S D +D P+L + L++
Sbjct: 241 VHQIFGGYLRSRVKCSVCKSVS-------------DTYD---------PYLDIALEI--- 275
Query: 363 PLFKDVMEKNIIPQVPLF---NILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRR 419
NI+ + LF ++L + + + A R+ + R + L ++R
Sbjct: 276 -----RQAANIVRALELFVKSDVLSGENAYMCAKCKKKVPASKRFTIHRTSNVLTLSLKR 330
Query: 420 FTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDG-KPEGGF 478
F NF K V +P + L ++ Y+ ++ Y L A +VH G G
Sbjct: 331 FA--NFSGGKITKDVGYP-EFLNIRPYM-----SQSSGDPVMYGLYAVLVHSGYSCHAGH 382
Query: 479 YRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIY 517
Y +V + S WY+M D V + ++V + Y+ Y
Sbjct: 383 YYCYV-KASNGQWYQMNDSLVHSSNVKVVLNQQAYVLFY 420
>sp|Q9C585|UBP8_ARATH Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana
GN=UBP8 PE=1 SV=2
Length = 871
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 408 RLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIAN 467
RLP+ +++H++RF+ + F K V+FP+ NL+L YI +N + +Y L A
Sbjct: 762 RLPEILVIHLKRFSYSRFMKNKLEAYVDFPLDNLDLSSYISY----KNGQTTYRYMLYAI 817
Query: 468 IVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQ 519
H G GG Y +V + WY+ D HV + + + S Y+ Y++
Sbjct: 818 SNHYGSMGGGHYTAYVHHGGDR-WYDFDDSHVHQISQEKIKTSAAYVLFYKR 868
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 95/230 (41%), Gaps = 23/230 (10%)
Query: 145 GRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDIRHVGLNNIKETDFVN 204
G Q+++ T+ + G V+ R+ + L E L GL N+ T F+N
Sbjct: 238 GSTQQTNGITNGMNGGT-VFRFGRSNSLSFLGKAGEAGTLGL-----TGLQNLGNTCFMN 291
Query: 205 VTIQSLMRVTPLRNFFLIP-------ENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPH 257
++Q L L +FFL +N K + FGDL R +W V+P
Sbjct: 292 SSLQCLAHTPKLVDFFLGEYSKEINLDNPLGMKGEIALAFGDLLRSLWAPG--ASTVAPR 349
Query: 258 EFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQG--ELEVV 315
F +A + +F Q + E +++LL+ LH DL K + + G + EV
Sbjct: 350 TF-KAKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKNKPYVEAKDGDGRPDAEVA 408
Query: 316 KEIPKNTISGNDQ---NTEKGSDGGDDHDNITTETSRM--PFLMLGLDLP 360
E +N ++ ND + +G I + S M PF+ L L LP
Sbjct: 409 DEYWRNHVARNDSIIVDVCQGQYKSTLVCPICKKVSVMFDPFMYLSLPLP 458
>sp|P40818|UBP8_HUMAN Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sapiens GN=USP8 PE=1
SV=1
Length = 1118
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 88/394 (22%), Positives = 153/394 (38%), Gaps = 115/394 (29%)
Query: 168 RTEKVYCLPDGYEINDPSLEDIRHV------------GLNNIKETDFVNVTIQSLMRVTP 215
R K C P EI+ S IR++ GL N+ T ++N +Q L
Sbjct: 742 RENKPTCYPKA-EISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPH 800
Query: 216 LRNFFLIPENYRHC-------------KSPLVHRFGDLTRKIWHARNFKGQ---VSPHEF 259
L ++F R+C K + FG + + +W GQ +SP +F
Sbjct: 801 LADYF-----NRNCYQDDINRSNLLGHKGEVAEEFGIIMKALW-----TGQYRYISPKDF 850
Query: 260 LQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDL------------------------- 294
+ K + + F Q + E + +L++ LH DL
Sbjct: 851 KITIGKINDQ-FAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEH 909
Query: 295 ---RNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMP 351
++ + N SII FQG+ K+T+ + SR
Sbjct: 910 AWQKHKQLNESIIVALFQGQF-------KSTVQCL----------------TCHKKSRTF 946
Query: 352 FLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGE-TVTEVVRPHVARMRYR----- 405
+ L LP K ++ + L+ F E +T+ R + + R R
Sbjct: 947 EAFMYLSLPLASTSKCTLQ----------DCLRLFSKEEKLTDNNRFYCSHCRARRDSLK 996
Query: 406 ---VTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKY 462
+ +LP +++H++RF+ + + +K T V+FP++NL+L Y+ PK N K KY
Sbjct: 997 KIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYV--IGPKNNLK---KY 1051
Query: 463 DLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQD 496
+L + H G +GG Y + + + + W++ D
Sbjct: 1052 NLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDD 1085
>sp|A6H8I0|UBP22_DANRE Ubiquitin carboxyl-terminal hydrolase 22 OS=Danio rerio GN=usp22
PE=2 SV=1
Length = 506
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 110/491 (22%), Positives = 181/491 (36%), Gaps = 129/491 (26%)
Query: 124 CSVSLSNLN-VYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYC-------- 174
C + ++LN +++CL C + G K H + H+ H++ I+L +YC
Sbjct: 46 CHMCGAHLNRLHSCLHC--VFFGCFSKKHIHEHAKNKRHNLAIDLLYGGIYCFVCQDYIY 103
Query: 175 --------------------LPDGYEINDPS---LEDIRH---------------VGLNN 196
+ + Y + +P+ LE +RH GL N
Sbjct: 104 DKDMEQIAKEEQRKAWKLQGIGEKYSMWEPTKRELELLRHNPKRRKITANCTIGLRGLIN 163
Query: 197 IKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCK----SPLVHRFGDLTRKIWHARNFKG 252
+ T F+N +Q+L LR+FFL + C+ S LV L ++ + G
Sbjct: 164 LGNTCFMNCIVQALTHTPLLRDFFL--SDRHKCEMQSNSCLVCEMSQLFQEF-----YSG 216
Query: 253 QVSPH-EFLQAVMKASKKRFRIGV-QSNPVEFMSWLLNTLHSDLR--NTKKNT------S 302
SPH F + + R G Q + EF+ L+ LH + N KK
Sbjct: 217 HRSPHIPFRLLHLVWTHARHLAGYEQQDAHEFLIAALDVLHRHCKDDNGKKANNPNHCNC 276
Query: 303 IIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLP-- 360
II + F G L+ ++ G T+ PF + LDLP
Sbjct: 277 IIDQIFTGGLQ--SDVTCQVCHG-------------------VSTTIDPFWDISLDLPGS 315
Query: 361 -------PPPLFKDVMEKNIIPQ--VPLFNILKKFD------GETVTEVVRPHV---ARM 402
P V+ + P L + L++F + H +
Sbjct: 316 STPFWPLSPGSDGSVVNGDSHPSGATTLTDCLRRFTRPEHLGSSAKIKCSGCHSYQESTK 375
Query: 403 RYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLR--- 459
+ + RLP H++RF + K T V+FP LEL D P + ++
Sbjct: 376 QLTMKRLPIVACFHLKRFEHSAKLRRKITTYVSFP---LEL-DMTPFMASSKESRMNGQY 431
Query: 460 ----------SKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVAL 509
+KY L A + H G E G Y F+ R+ ++ W++ D +++ + V
Sbjct: 432 QQPVDSLNNDNKYSLFAVVNHQGTLESGHYTTFI-RQHKDQWFKCDDAIITKASIKDVLD 490
Query: 510 SETYMQIYEQQ 520
SE Y+ Y +Q
Sbjct: 491 SEGYLLFYHKQ 501
>sp|Q8C6M1|UBP20_MOUSE Ubiquitin carboxyl-terminal hydrolase 20 OS=Mus musculus GN=Usp20
PE=1 SV=1
Length = 916
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 405 RVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDL 464
+V LP+ + +H++RF + K + V+FP++ L+L+ ++ KE + YDL
Sbjct: 576 KVLCLPEILCVHLKRFRHEVMYSFKVSSHVSFPLEGLDLRPFLA----KECTSQVTTYDL 631
Query: 465 IANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQ 519
++ I H G G Y + Q WYE D +V+E +V E Y+ Y +
Sbjct: 632 LSVICHHGTAGSGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNVEAYVLFYRK 686
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 93/248 (37%), Gaps = 54/248 (21%)
Query: 100 EVRRDCPYLDT---VNRQVLDFDFEKFC-SVSLSNLNVYACLVCGKYYQGRGQK--SHAY 153
+ R CP+LD V ++ L + C S ++ N++ACL Y G G+ H+
Sbjct: 3 DARDLCPHLDCIGEVTKEDLLLKSKGTCQSCGVAGPNLWACLQVTCPYVGCGESFADHSS 62
Query: 154 THSLEAGHHVYINLRTEKVYCLPDGYEI-------------------------------- 181
H+ H++ +NL T +V+C E+
Sbjct: 63 IHAQVKKHNLTVNLTTFRVWCYACEREVFLEQRLAVHLASSSARLSEQDSPPPSHPLKAV 122
Query: 182 ------------NDPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFL-IPENYRH 228
D L+ G+ N+ + ++N +Q+L PL FFL R
Sbjct: 123 PIAVADEGESESEDDDLKPRGLTGMKNLGNSCYMNAALQALSNCPPLTQFFLECGGLVRT 182
Query: 229 CKSP-LVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLL 287
K P L + L ++WH + V P + K FR Q + EF+ L+
Sbjct: 183 DKKPALCKSYQKLISEVWHKKR-PSYVVPTSLSHGI-KLVNPMFRGYAQQDTQEFLRCLM 240
Query: 288 NTLHSDLR 295
+ LH +L+
Sbjct: 241 DQLHEELK 248
>sp|Q99K46|UBP11_MOUSE Ubiquitin carboxyl-terminal hydrolase 11 OS=Mus musculus GN=Usp11
PE=2 SV=4
Length = 921
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 4/147 (2%)
Query: 377 VPLFNILKKFDGET---VTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTL 433
+ LF ++ + E + + +A + + LP+ +I+H++RF+ + EK TL
Sbjct: 744 IKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISREKLDTL 803
Query: 434 VNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYE 493
V FP+++L+ +++ P + + L KYDLIA H G G Y F K W+
Sbjct: 804 VQFPIRDLDFSEFVIKPKNESSPDLY-KYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHY 862
Query: 494 MQDLHVSETLPQMVALSETYMQIYEQQ 520
D VS + Y+ Y++Q
Sbjct: 863 FDDNSVSPVNENQIESKAAYVLFYQRQ 889
Score = 45.8 bits (107), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 86/206 (41%), Gaps = 28/206 (13%)
Query: 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFL----IPE-NYRH---CKSPLVHRFGDLTRK 243
GL N+ T F+N +Q L V L +FL + E N+R+ K L + DL ++
Sbjct: 257 CGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNFRNPLGMKGELAEAYADLVKQ 316
Query: 244 IWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSI 303
W + + P+ F V + + F Q + E +S+LL+ LH DL KK +
Sbjct: 317 TWSG--YHRSIVPNVFKNKVGHFASQ-FLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYV 373
Query: 304 IYECFQG----ELEVVKEIPKNTISGND-------QNTEKGSDGGDDHDNITTETSRMPF 352
E G +LEV +E +N ND K + D N++ PF
Sbjct: 374 --ELCNGAGRPDLEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFD--PF 429
Query: 353 LMLGLDLPPPPLFKDVMEKNIIPQVP 378
L +P P + V+E +P P
Sbjct: 430 CYLS--VPLPVCSRRVLEVFFVPMDP 453
>sp|Q80U87|UBP8_MOUSE Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus musculus GN=Usp8 PE=1
SV=2
Length = 1080
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 87/394 (22%), Positives = 152/394 (38%), Gaps = 115/394 (29%)
Query: 168 RTEKVYCLPDGYEINDPSLEDIRHV------------GLNNIKETDFVNVTIQSLMRVTP 215
R K C P EI+ S IR++ GL N+ T ++N +Q L
Sbjct: 704 RENKPPCYPKA-EISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPH 762
Query: 216 LRNFFLIPENYRHC-------------KSPLVHRFGDLTRKIWHARNFKGQ---VSPHEF 259
L ++F R+C K + FG + + +W GQ +SP +F
Sbjct: 763 LADYF-----NRNCYQDDINRSNLLGHKGEVAEEFGIIMKALW-----TGQYRYISPKDF 812
Query: 260 LQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDL------------------------- 294
+ K + + F Q + E + +L++ LH DL
Sbjct: 813 KVTIGKINDQ-FAGSSQQDSQELLLFLMDGLHEDLNKADNRKRHKEENNEHLDDLQAAEH 871
Query: 295 ---RNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMP 351
++ + N SII FQG+ K+T+ SR
Sbjct: 872 AWQKHKQLNESIIVALFQGQF-------KSTVQCL----------------TCRRRSRTF 908
Query: 352 FLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGE-TVTEVVRPHVARMRYR----- 405
+ L LP K ++ + L+ F E +T+ R + + R R
Sbjct: 909 EAFMYLSLPLASTSKCTLQ----------DCLRLFSKEEKLTDNNRFYCSHCRARRDSLK 958
Query: 406 ---VTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKY 462
+ +LP +++H++RF+ + + +K T V+FP++NL+L Y+ PK + K KY
Sbjct: 959 KIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYV--IGPKNSLK---KY 1013
Query: 463 DLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQD 496
+L + H G +GG Y + + + + W++ D
Sbjct: 1014 NLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDD 1047
>sp|Q9UPT9|UBP22_HUMAN Ubiquitin carboxyl-terminal hydrolase 22 OS=Homo sapiens GN=USP22
PE=1 SV=2
Length = 525
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 109/494 (22%), Positives = 182/494 (36%), Gaps = 131/494 (26%)
Query: 123 FCSVSLSNLN-VYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYC------- 174
C V +LN +++CL C + G K H + H+ H++ I+L +YC
Sbjct: 62 ICHVCGVHLNRLHSCLYC--VFFGCFTKKHIHEHAKAKRHNLAIDLMYGGIYCFLCQDYI 119
Query: 175 ---------------------LPDGYEINDPS---LEDIRH---------------VGLN 195
+ + + +P+ LE ++H GL
Sbjct: 120 YDKDMEIIAKEEQRKAWKMQGVGEKFSTWEPTKRELELLKHNPKRRKITSNCTIGLRGLI 179
Query: 196 NIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSP---LVHRFGDLTRKIWHARNFKG 252
N+ T F+N +Q+L LR+FFL + +SP LV L ++ + G
Sbjct: 180 NLGNTCFMNCIVQALTHTPLLRDFFLSDRHRCEMQSPSSCLVCEMSSLFQEF-----YSG 234
Query: 253 QVSPH---EFLQAVMKASKKRFRIGV-QSNPVEFMSWLLNTLHSDLR---NTKKNT---- 301
SPH + L V + R G Q + EF+ L+ LH + N KK
Sbjct: 235 HRSPHIPYKLLHLVW--THARHLAGYEQQDAHEFLIAALDVLHRHCKGDDNGKKANNPNH 292
Query: 302 --SIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDL 359
II + F G L+ ++ G T+ PF + LDL
Sbjct: 293 CNCIIDQIFTGGLQ--SDVTCQVCHG-------------------VSTTIDPFWDISLDL 331
Query: 360 P---------PPPLFKDVM--EKNIIPQVPLFNILKKFD------GETVTEVVRPHV--- 399
P P +V+ E ++ L + L++F + H
Sbjct: 332 PGSSTPFWPLSPGSEGNVVNGESHVSGTTTLTDCLRRFTRPEHLGSSAKIKCSGCHSYQE 391
Query: 400 ARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLR 459
+ + + +LP H++RF + K T V+FP LEL D P + ++
Sbjct: 392 STKQLTMKKLPIVACFHLKRFEHSAKLRRKITTYVSFP---LEL-DMTPFMASSKESRMN 447
Query: 460 -------------SKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQM 506
+KY L A + H G E G Y F+ R+ ++ W++ D +++ +
Sbjct: 448 GQYQQPTDSLNNDNKYSLFAVVNHQGTLESGHYTSFI-RQHKDQWFKCDDAIITKASIKD 506
Query: 507 VALSETYMQIYEQQ 520
V SE Y+ Y +Q
Sbjct: 507 VLDSEGYLLFYHKQ 520
>sp|P0C8Z3|UBP22_BOVIN Ubiquitin carboxyl-terminal hydrolase 22 OS=Bos taurus GN=USP22
PE=2 SV=1
Length = 514
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 142/377 (37%), Gaps = 82/377 (21%)
Query: 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSP---LVHRFGDLTRKIWHARN 249
GL N+ T F+N +Q+L LR+FFL + +SP LV L ++
Sbjct: 166 GLINLGNTCFMNCIVQALTHTPLLRDFFLSDRHRCEMQSPSSCLVCEMSSLFQEF----- 220
Query: 250 FKGQVSPH---EFLQAVMKASKKRFRIGV-QSNPVEFMSWLLNTLHSDLR---NTKKNT- 301
+ G SPH + L V + R G Q + EF+ L+ LH + N KK
Sbjct: 221 YSGHRSPHIPYKLLHLVW--THARHLAGYEQQDAHEFLIAALDVLHRHCKGDDNGKKANN 278
Query: 302 -----SIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLG 356
II + F G L+ ++ G T+ PF +
Sbjct: 279 PNHCNCIIDQIFTGGLQ--SDVTCQVCHG-------------------VSTTIDPFWDIS 317
Query: 357 LDLP---------PPPLFKDVM--EKNIIPQVPLFNILKKFD------GETVTEVVRPHV 399
LDLP P V+ E ++ L + L++F + H
Sbjct: 318 LDLPGSSTPFWPLSPGSESSVVNGESHVSGTTTLTDCLRRFTRPEHLGSSAKIKCSGCHS 377
Query: 400 ---ARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENE 456
+ + + +LP H++RF + K T V+FP LEL D P +
Sbjct: 378 YQESTKQLTMKKLPIVACFHLKRFEHSAKLRRKITTYVSFP---LEL-DMTPFMASSKES 433
Query: 457 KLR-------------SKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETL 503
++ +KY L A + H G E G Y F+ R+ ++ W++ D +++
Sbjct: 434 RMNGQYQQPTDSLNNDNKYSLFAVVNHQGTLESGHYTSFI-RQHKDQWFKCDDAIITKAS 492
Query: 504 PQMVALSETYMQIYEQQ 520
V SE Y+ Y +Q
Sbjct: 493 IADVLDSEGYLLFYHKQ 509
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,764,711
Number of Sequences: 539616
Number of extensions: 10142407
Number of successful extensions: 54104
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 298
Number of HSP's that attempted gapping in prelim test: 48479
Number of HSP's gapped (non-prelim): 4013
length of query: 521
length of database: 191,569,459
effective HSP length: 122
effective length of query: 399
effective length of database: 125,736,307
effective search space: 50168786493
effective search space used: 50168786493
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)