Query 009986
Match_columns 521
No_of_seqs 325 out of 1887
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 19:41:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009986.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009986hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02669 Peptidase_C19M A subfa 100.0 3.6E-96 8E-101 781.0 35.7 401 106-518 1-440 (440)
2 KOG2026 Spindle pole body prot 100.0 5.6E-86 1.2E-90 649.5 20.2 401 99-521 7-442 (442)
3 KOG0944 Ubiquitin-specific pro 100.0 5.2E-67 1.1E-71 545.1 24.5 368 115-521 174-763 (763)
4 cd02660 Peptidase_C19D A subfa 100.0 1.7E-56 3.6E-61 460.3 29.4 301 193-518 2-328 (328)
5 cd02658 Peptidase_C19B A subfa 100.0 2E-56 4.3E-61 456.6 28.0 285 193-518 1-311 (311)
6 cd02663 Peptidase_C19G A subfa 100.0 1.2E-56 2.5E-61 456.3 26.0 264 193-518 1-300 (300)
7 cd02657 Peptidase_C19A A subfa 100.0 1.1E-55 2.4E-60 449.8 26.4 280 193-518 1-305 (305)
8 COG5207 UBP14 Isopeptidase T [ 100.0 3.1E-56 6.6E-61 450.5 21.5 383 101-519 151-748 (749)
9 cd02667 Peptidase_C19K A subfa 100.0 6.6E-56 1.4E-60 446.2 24.0 251 193-518 1-279 (279)
10 KOG1865 Ubiquitin carboxyl-ter 100.0 1.6E-56 3.4E-61 463.0 19.9 282 192-520 109-410 (545)
11 cd02668 Peptidase_C19L A subfa 100.0 3.5E-55 7.7E-60 450.0 27.6 277 193-518 1-324 (324)
12 cd02671 Peptidase_C19O A subfa 100.0 2.5E-53 5.5E-58 436.0 26.4 280 190-518 23-332 (332)
13 COG5560 UBP12 Ubiquitin C-term 100.0 1.1E-54 2.3E-59 449.3 13.2 299 193-520 267-822 (823)
14 cd02664 Peptidase_C19H A subfa 100.0 5.6E-53 1.2E-57 434.1 25.2 272 193-518 1-327 (327)
15 cd02661 Peptidase_C19E A subfa 100.0 3.2E-52 6.9E-57 422.9 25.9 281 191-518 1-304 (304)
16 cd02659 peptidase_C19C A subfa 100.0 1.5E-51 3.2E-56 424.6 26.9 290 191-520 2-332 (334)
17 KOG1873 Ubiquitin-specific pro 100.0 4.5E-52 9.8E-57 437.0 9.1 381 131-520 91-877 (877)
18 KOG1867 Ubiquitin-specific pro 100.0 1.9E-49 4.1E-54 420.9 19.0 358 131-520 54-484 (492)
19 cd02662 Peptidase_C19F A subfa 100.0 8.9E-49 1.9E-53 385.8 21.7 214 193-518 1-240 (240)
20 COG5533 UBP5 Ubiquitin C-termi 100.0 1.8E-48 3.8E-53 374.4 19.1 295 183-520 63-414 (415)
21 PF00443 UCH: Ubiquitin carbox 100.0 1.8E-45 3.9E-50 363.5 24.2 246 191-517 1-269 (269)
22 cd02674 Peptidase_C19R A subfa 100.0 2.1E-45 4.4E-50 358.8 19.2 221 193-518 1-230 (230)
23 KOG1868 Ubiquitin C-terminal h 100.0 2.5E-45 5.3E-50 396.0 14.1 300 185-520 295-646 (653)
24 cd02666 Peptidase_C19J A subfa 100.0 3.6E-44 7.9E-49 368.2 13.8 276 191-518 1-343 (343)
25 cd02665 Peptidase_C19I A subfa 100.0 9.3E-43 2E-47 337.1 16.5 210 193-518 1-228 (228)
26 cd02673 Peptidase_C19Q A subfa 100.0 3.6E-41 7.8E-46 331.5 18.5 225 194-518 2-245 (245)
27 cd02257 Peptidase_C19 Peptidas 100.0 2.8E-39 6E-44 314.8 20.6 232 193-518 1-255 (255)
28 KOG1870 Ubiquitin C-terminal h 100.0 6.7E-38 1.5E-42 354.4 14.8 300 190-520 245-841 (842)
29 KOG1866 Ubiquitin carboxyl-ter 100.0 1.1E-38 2.5E-43 335.0 3.0 294 186-520 90-434 (944)
30 COG5077 Ubiquitin carboxyl-ter 100.0 3.6E-38 7.7E-43 331.5 6.2 291 186-520 188-511 (1089)
31 cd02672 Peptidase_C19P A subfa 100.0 3.2E-36 7E-41 300.1 13.6 236 187-518 11-268 (268)
32 cd02670 Peptidase_C19N A subfa 100.0 1.4E-32 3.1E-37 268.3 16.2 205 193-518 1-241 (241)
33 KOG1863 Ubiquitin carboxyl-ter 100.0 4E-32 8.7E-37 314.6 12.8 286 192-520 171-485 (1093)
34 KOG4598 Putative ubiquitin-spe 100.0 2.5E-32 5.4E-37 284.7 1.6 278 183-520 79-441 (1203)
35 PF13423 UCH_1: Ubiquitin carb 100.0 2.8E-29 6E-34 254.7 22.0 271 192-499 1-295 (295)
36 KOG1864 Ubiquitin-specific pro 100.0 1.1E-28 2.4E-33 266.3 13.2 286 192-519 233-571 (587)
37 KOG1871 Ubiquitin-specific pro 99.9 7.2E-28 1.6E-32 239.6 10.3 295 189-520 26-419 (420)
38 KOG1872 Ubiquitin-specific pro 99.9 2.1E-27 4.6E-32 242.1 5.0 294 191-520 105-469 (473)
39 PF02148 zf-UBP: Zn-finger in 99.6 1.3E-16 2.7E-21 123.7 1.9 62 124-185 1-63 (63)
40 KOG1275 PAB-dependent poly(A) 99.5 3.2E-13 6.9E-18 146.7 11.9 302 189-517 497-860 (1118)
41 smart00290 ZnF_UBP Ubiquitin C 99.0 1.9E-10 4.1E-15 84.8 2.6 48 124-171 2-49 (50)
42 KOG0804 Cytoplasmic Zn-finger 98.6 1.6E-08 3.4E-13 103.5 2.1 62 120-181 227-288 (493)
43 PF15499 Peptidase_C98: Ubiqui 98.4 2.1E-06 4.5E-11 82.8 10.5 240 195-518 6-275 (275)
44 KOG2026 Spindle pole body prot 98.1 4.3E-07 9.4E-12 91.6 -1.3 169 1-176 1-181 (442)
45 KOG1864 Ubiquitin-specific pro 96.7 0.0023 5.1E-08 70.5 6.0 103 194-296 34-154 (587)
46 PF08715 Viral_protease: Papai 96.7 0.048 1E-06 55.7 14.7 75 193-292 101-179 (320)
47 KOG1887 Ubiquitin carboxyl-ter 92.2 0.023 4.9E-07 63.4 -2.0 87 404-503 676-766 (806)
48 PF05408 Peptidase_C28: Foot-a 91.0 0.18 3.9E-06 46.8 2.8 30 475-506 137-166 (193)
49 PF09416 UPF1_Zn_bind: RNA hel 89.4 0.15 3.2E-06 46.2 0.9 50 130-179 11-68 (152)
50 PF05408 Peptidase_C28: Foot-a 82.2 2.3 5E-05 39.6 4.8 32 190-221 32-65 (193)
51 KOG3556 Familial cylindromatos 73.3 4.5 9.6E-05 43.4 4.4 36 403-438 515-550 (724)
52 cd00729 rubredoxin_SM Rubredox 48.9 9.4 0.0002 25.5 1.1 14 133-146 2-15 (34)
53 KOG3362 Predicted BBOX Zn-fing 48.1 5.9 0.00013 35.4 -0.1 25 120-145 117-141 (156)
54 KOG1867 Ubiquitin-specific pro 43.3 12 0.00025 41.0 1.3 145 121-291 31-181 (492)
55 PF08790 zf-LYAR: LYAR-type C2 41.5 15 0.00033 23.5 1.1 19 134-152 1-19 (28)
56 PF02099 Josephin: Josephin; 39.9 40 0.00087 31.0 4.1 31 464-500 99-129 (157)
57 cd00350 rubredoxin_like Rubred 39.7 15 0.00032 24.2 0.9 14 133-146 1-14 (33)
58 KOG2023 Nuclear transport rece 35.0 20 0.00042 40.1 1.4 11 158-168 444-454 (885)
59 KOG1802 RNA helicase nonsense 34.9 21 0.00046 40.0 1.6 50 131-180 72-129 (935)
60 KOG1871 Ubiquitin-specific pro 32.8 25 0.00054 36.8 1.6 111 184-294 171-314 (420)
61 KOG0943 Predicted ubiquitin-pr 31.1 46 0.001 39.7 3.5 9 282-290 2114-2122(3015)
62 KOG0957 PHD finger protein [Ge 29.3 1.6E+02 0.0035 31.9 6.8 57 123-184 121-183 (707)
63 PF09026 CENP-B_dimeris: Centr 28.7 19 0.00041 30.0 0.0 8 107-114 52-59 (101)
64 PF03117 Herpes_UL49_1: UL49 f 26.2 65 0.0014 31.7 3.2 48 131-180 103-161 (245)
65 PF01473 CW_binding_1: Putativ 25.4 72 0.0016 18.0 2.1 14 482-497 3-16 (19)
66 PF04438 zf-HIT: HIT zinc fing 22.0 38 0.00082 22.0 0.5 23 122-145 3-25 (30)
67 PHA00616 hypothetical protein 20.6 28 0.0006 24.8 -0.4 23 134-156 2-25 (44)
No 1
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.6e-96 Score=780.98 Aligned_cols=401 Identities=61% Similarity=1.040 Sum_probs=354.0
Q ss_pred CccccccccccCCCCcccccccCCCCceEEecccCcccccCCCCCCcccccccCCccEEEEeCCCceEecCCCCcccCCC
Q 009986 106 PYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPS 185 (521)
Q Consensus 106 ~~l~ti~r~~l~~d~~k~Cs~~ls~~nl~~CL~CG~~~~G~~~~~ha~~H~~~~~H~v~v~l~t~~vyc~~~~~~v~d~~ 185 (521)
||||||||.+|||||||+|++|+++.|+|+||+||+||||||+++||+.|+.+++|++|||++|++||||||+++|.|++
T Consensus 1 ~yl~ti~r~~ldfd~e~~C~~~~~~~n~~~CL~cg~~~~g~~~~~ha~~H~~~~~H~~~v~l~t~~~yc~~~~~~v~d~~ 80 (440)
T cd02669 1 PYLDTINRSVLDFDFEKVCSVSLSNLNVYACLVCGKYFQGRGKGSHAYTHSLEDNHHVFLNLETLKFYCLPDNYEIIDSS 80 (440)
T ss_pred CchhhhhhhhccccccccccccCCCCcEEEEcccCCeecCCCCCcHHHHHhhccCCCEEEECCCCCEEEeCCCCEEeCcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhh---------------------------------cCCccCCCCchhhHHHHHHhCchhHHHHhcCccccc---CC
Q 009986 186 LEDIRH---------------------------------VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYR---HC 229 (521)
Q Consensus 186 l~di~~---------------------------------~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~---~~ 229 (521)
|++|++ +||.|+|||||||||||+|+|+|+||++|+...+.. ..
T Consensus 81 l~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~ 160 (440)
T cd02669 81 LDDIKYVLNPTYTKEQISDLDRDPKLSRDLDGKPYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDR 160 (440)
T ss_pred HHHHHHHhcCCCCHHHHHHhhhccccccccCCCCccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCC
Confidence 998863 299999999999999999999999999999654322 23
Q ss_pred CChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhcccCCCCCCcCCHHHHHHHHHHHHHHhhccC-CCCCCcccccc
Q 009986 230 KSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNT-KKNTSIIYECF 308 (521)
Q Consensus 230 ~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~-~~~~sii~~~F 308 (521)
..+++++|+.+++++|+++.++.+|+|.+|+++++..+++.|.++.||||+|||.||||.||+++.+. +...++|+++|
T Consensus 161 ~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~~~~~~ii~~~F 240 (440)
T cd02669 161 KSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKPNSSIIHDCF 240 (440)
T ss_pred CcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccCCCCCCCcceecc
Confidence 56899999999999999988889999999999999876788999999999999999999999999864 34678999999
Q ss_pred CcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCC-ceeeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhc
Q 009986 309 QGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNI-TTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFD 387 (521)
Q Consensus 309 ~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~-~~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~ 387 (521)
+|+++++++|..+.......-.. -..|. ..+++.+||++|+|+||..++++++...+.+|+++|++||++|+
T Consensus 241 ~G~l~~~~~c~~~~~~~~~~~~~-------~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~ky~ 313 (440)
T cd02669 241 QGKVQIETQKIKPHAEEEGSKDK-------FFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLKKYD 313 (440)
T ss_pred CceEEEEEEeecccccccccccc-------cccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHHhcC
Confidence 99999999987632211100000 00143 46778899999999999999999888888899999999999999
Q ss_pred ccceeeccceeeeEEEEEEecCCCeeEEEEeeEEecCceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEEeEE
Q 009986 388 GETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIAN 467 (521)
Q Consensus 388 ~~~~~~c~~~~~a~k~~~i~~lP~~LiihlkRF~~~~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~av 467 (521)
+++|.. ...++|+++|.+||+||+||||||+++.+..+|+++.|+||++.|||++|+..+.. ......+|+|+||
T Consensus 314 ~~~c~~---~~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~--~~~~~~~Y~L~av 388 (440)
T cd02669 314 GKTETE---LKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKP--SLNLSTKYNLVAN 388 (440)
T ss_pred Ccccee---cccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCcccc--ccCCCceEEEEEE
Confidence 877544 45668999999999999999999999888889999999999877999999974322 2234578999999
Q ss_pred EEEeccC-CCCeEEEEEEECCCCcEEEEeCceeeeeCcccccCCCcEEEEEE
Q 009986 468 IVHDGKP-EGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYE 518 (521)
Q Consensus 468 I~H~G~~-~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYllfYe 518 (521)
|+|.|++ ++|||+||+|+..+|+||+|||+.|++++++.|+.++||||||+
T Consensus 389 I~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 389 IVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred EEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence 9999988 99999999998778999999999999999999999999999996
No 2
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=100.00 E-value=5.6e-86 Score=649.52 Aligned_cols=401 Identities=63% Similarity=1.068 Sum_probs=369.6
Q ss_pred cccCCCCCccccccccccCCCCcccccccCCCCceEEecccCcccccCCCCCCcccccccCCccEEEEeCC-CceEecCC
Q 009986 99 VEVRRDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRT-EKVYCLPD 177 (521)
Q Consensus 99 ~~~~~~c~~l~ti~r~~l~~d~~k~Cs~~ls~~nl~~CL~CG~~~~G~~~~~ha~~H~~~~~H~v~v~l~t-~~vyc~~~ 177 (521)
......|+||+|++|++|||||+|.|++++++.|+|+||+||+||+|||.+|||+.|+.+++||+|+|+.| ++.|++|.
T Consensus 7 ~~~~~~~~yldtv~r~vldfd~ek~c~vslsnLnvyAclvcg~y~qgr~~kS~A~~h~l~~ghhvf~nl~telkfyvlpe 86 (442)
T KOG2026|consen 7 KKQEPNYAYLETVVRRVLDFDFEKPCSVSLSNLNVYACLVCGKYFQGRGEKSHAYTHSLEEGHHVFLNLSTELKFYVLPE 86 (442)
T ss_pred cccCcchHhhhhhhhhhccccCCCCCcccccccceeeeeeeCchhhCcCccccchhccccccccceeccccceeEEecch
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCcccCCChhhhhhc----------------------------------CCccCCCCchhhHHHHHHhCchhHHHHhcCc
Q 009986 178 GYEINDPSLEDIRHV----------------------------------GLNNIKETDFVNVTIQSLMRVTPLRNFFLIP 223 (521)
Q Consensus 178 ~~~v~d~~l~di~~~----------------------------------GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~ 223 (521)
++++.|+++.+|+++ ||+|+.++.|.|++||+|+|++|+|+||+..
T Consensus 87 ~~ei~d~s~~~ikhslkptftr~~cp~lD~~nr~~~raLd~~tYLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~ 166 (442)
T KOG2026|consen 87 NYEIDDPSLGDIKHSLKPTFTKTDCPNLDKVNRKLSRALDGSTYLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLE 166 (442)
T ss_pred hccccCchhhhhhccccceeehhhcccccccchhhhhhhcCCcceeeeeccchhhhHHHHHHHHHHHhccchhhhhhccc
Confidence 999999999998753 9999999999999999999999999999987
Q ss_pred ccccCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhcccCCCCCCcCCHHHHHHHHHHHHHHhhccCCCCCCc
Q 009986 224 ENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSI 303 (521)
Q Consensus 224 ~~~~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~~~~si 303 (521)
+++.+....++++|+.+++++|++++|+++|||++|++++...|+++|+.++|.||.|||+||||.||.+++++++.+||
T Consensus 167 ~n~~d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k~~~SI 246 (442)
T KOG2026|consen 167 ENYFDNLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSKKASSI 246 (442)
T ss_pred ccccchhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCCCchhH
Confidence 77778889999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred cccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCceeeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHh
Q 009986 304 IYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNIL 383 (521)
Q Consensus 304 i~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L 383 (521)
|+..|+|++++..+-... +.+ -........|||.|+||||++|+|+|..+++|||||.|.++|
T Consensus 247 i~~~fqG~~ri~k~~~~~-------~~~----------~~~~~i~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL 309 (442)
T KOG2026|consen 247 IHKSFQGEVRIVKEKQGE-------ASE----------NENKEISVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLL 309 (442)
T ss_pred hhHhhcceEEeeeecccc-------ccc----------cccceEEEEeeEEEEecCCCCCcccchhhhcccccchHHHHH
Confidence 999999999987664440 111 235678889999999999999999999999999999999999
Q ss_pred hhhcccceeeccceeeeEEEEEEecCCCeeEEEEeeEEecCceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEE
Q 009986 384 KKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYD 463 (521)
Q Consensus 384 ~~f~~~~~~~c~~~~~a~k~~~i~~lP~~LiihlkRF~~~~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~ 463 (521)
.+|+|++..+..+...+ +|+++.++|+|||+|++||..|++..+||+|.|+||...+|+.++...... ..... +.|.
T Consensus 310 ~Kf~g~t~~e~~~~~~~-~rf~l~k~P~ylifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~-~~~~~-~~~~ 386 (442)
T KOG2026|consen 310 KKFDGETVTEVVTPKLA-MRFRLTKLPRYLIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKA-VNHKV-TQYS 386 (442)
T ss_pred HHhcCceeeeecchhhh-hheeeecCCceEEEEeeeccccCcccccCCceeeccCCccchhhhhhhccc-ccCcc-cccc
Confidence 99999999998888777 899999999999999999999999999999999999666877776653332 22233 7899
Q ss_pred EeEEEEEeccCCCCeEEEEEEECCCCcEEEEeCceeeeeCcccccCCCcEEEEEEEeC
Q 009986 464 LIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQQ 521 (521)
Q Consensus 464 L~avI~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYllfYeR~~ 521 (521)
|+|+++|. ...|||.+++++++.++||+++|.+|++..+++|.++|+||++||+++
T Consensus 387 ~~~N~i~~--~e~~~~riqi~~~~s~kW~eiqdl~v~e~~~qmi~L~Es~iQiwe~~e 442 (442)
T KOG2026|consen 387 LVANAIHE--DEDGNFRIQIYDNSSEKWYEIQDLHVTERLPQMIFLKESFIQIWEKQE 442 (442)
T ss_pred chhhhhcC--cccCceEEEEEeCCCcceEEecccchhhhhhHHHHHHHHHHHHHhccC
Confidence 99999998 688999999999999999999999999999999999999999999975
No 3
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-67 Score=545.13 Aligned_cols=368 Identities=24% Similarity=0.363 Sum_probs=317.7
Q ss_pred ccCCCCcccccccCCCCceEEecccCcccccC------CCCCCcccccccCCccEEEEeCC-----CceEecCCCCcccC
Q 009986 115 VLDFDFEKFCSVSLSNLNVYACLVCGKYYQGR------GQKSHAYTHSLEAGHHVYINLRT-----EKVYCLPDGYEIND 183 (521)
Q Consensus 115 ~l~~d~~k~Cs~~ls~~nl~~CL~CG~~~~G~------~~~~ha~~H~~~~~H~v~v~l~t-----~~vyc~~~~~~v~d 183 (521)
.+..+.+| |+.|.-+.|||+||+||.+.||| |+|+||..||.+++|||+|+|+| .+||||+|+++|.|
T Consensus 174 ~~~~~gwk-Cs~CDL~~NLWlcLtcG~v~CGR~qfg~~GgNgHA~~HYr~tghPLaVKLgsIs~dg~DvycY~cDd~v~d 252 (763)
T KOG0944|consen 174 RIPPSGWK-CSKCDLTENLWLCLTCGSVGCGRKQFGGSGGNGHALSHYRETGHPLAVKLGSISPDGADVYCYDCDDEVRD 252 (763)
T ss_pred ccCCCcce-ecccCcccceEEEeccCceeecceeecCCCCCcchHHhhhhcCCceEEEecccCCCccceeeecccccccC
Confidence 35566666 55566669999999999999998 56999999999999999999997 89999999999999
Q ss_pred CChhhhh-----------------------------------------------hcCCccCCCCchhhHHHHHHhCchhH
Q 009986 184 PSLEDIR-----------------------------------------------HVGLNNIKETDFVNVTIQSLMRVTPL 216 (521)
Q Consensus 184 ~~l~di~-----------------------------------------------~~GL~NlGNTCYmNsVLQ~L~~ip~f 216 (521)
|+|..+. |+||.|+||+||||||||+|+.+|.|
T Consensus 253 Pnl~~hl~hfGId~~~m~kteksl~elel~~N~i~Ew~~~~esg~~l~p~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~f 332 (763)
T KOG0944|consen 253 PNLESHLSHFGIDMAKMDKTEKSLVELELDQNRIWEWEALEESGAPLEPLFGPGYTGLINLGNSCYLNSVMQSLFSIPSF 332 (763)
T ss_pred ccHHHHHHhcCccHHHhccchhHHHHHHHHhhcccCceeeccCCCccccccCCCccceeecCcchhHHHHHHHheecccH
Confidence 9887653 23999999999999999999999999
Q ss_pred HHHhcCcccc-----cCCCChHHHHHHHHHHHHHccCCCC--------CcCChHHHHHHHHHhcccCCCCCCcCCHHHHH
Q 009986 217 RNFFLIPENY-----RHCKSPLVHRFGDLTRKIWHARNFK--------GQVSPHEFLQAVMKASKKRFRIGVQSNPVEFM 283 (521)
Q Consensus 217 r~~~l~~~~~-----~~~~~~l~~~l~~L~~~l~s~~~~~--------~~vsP~~ll~~i~~~s~~~F~~~~QqDA~EFl 283 (521)
..+++...++ .....++.++|.+|+..|.+++..+ .+|+|..|+..|++. ++.|+..+||||+|||
T Consensus 333 q~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qngIsP~mFK~~igkn-HpeFst~~QQDA~EFl 411 (763)
T KOG0944|consen 333 QRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNGISPLMFKALIGKN-HPEFSTNRQQDAQEFL 411 (763)
T ss_pred HHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccCCcCHHHHHHHHcCC-CccccchhhhhHHHHH
Confidence 9998865332 2345689999999999999987554 489999999999997 9999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCceeeeeecceeeecCCCCCC
Q 009986 284 SWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPP 363 (521)
Q Consensus 284 ~~LLn~L~~~l~~~~~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s~~~~~f~~LsL~lp~~~ 363 (521)
++||+.|.+....+ ...+.++|.+.++.+++|.. |..++++.++-+.+.|+||...
T Consensus 412 lfLl~ki~~n~rs~---~~nptd~frF~ve~Rv~C~~---------------------c~kVrYs~~~~~~i~lpv~~~~ 467 (763)
T KOG0944|consen 412 LFLLEKIRENSRSS---LPNPTDLFRFEVEDRVSCLG---------------------CRKVRYSYESEYLIQLPVPMTN 467 (763)
T ss_pred HHHHHHHhhccccc---CCCHHHHHHhhhhhhhhhhc---------------------cccccccchhheeeEeeccccc
Confidence 99999999865443 15689999999999999999 9999999999999999998521
Q ss_pred cchhhhhcccCCCCchhhHhhhhcccc-----eeeccceeeeEEEEEEecCCCeeEEEEeeEEecCceeeeCCeeEeecC
Q 009986 364 LFKDVMEKNIIPQVPLFNILKKFDGET-----VTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPV 438 (521)
Q Consensus 364 ~~~~~~~~~~~p~vsL~~~L~~f~~~~-----~~~c~~~~~a~k~~~i~~lP~~LiihlkRF~~~~~~~~K~~~~V~FP~ 438 (521)
.+..++++..||+.|++.. +..|+.+..|+|+.+|++||+|||||++||...+|..+|+...+..|
T Consensus 468 --------~v~~~v~~~~cleaff~pq~~df~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~~dw~pkKld~~iemp- 538 (763)
T KOG0944|consen 468 --------EVREKVPISACLEAFFEPQVDDFWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTLQDWVPKKLDVSIEMP- 538 (763)
T ss_pred --------cccccCCHHHHHHHhcCCcchhhhhHhhcCccccccccccccCCceEEEEeeEEEecCceeeeeccceecc-
Confidence 2566799999999999873 45688889999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCCCCC----------------------------------------------------------------
Q 009986 439 KNLELKDYIPLPTPKE---------------------------------------------------------------- 454 (521)
Q Consensus 439 ~~Ldl~~~~~~~~~~~---------------------------------------------------------------- 454 (521)
+.||++.|.+.+.++.
T Consensus 539 e~ldls~~rs~g~~p~ee~lpde~~~~~~~~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~ 618 (763)
T KOG0944|consen 539 EELDLSSYRSKGLQPGEEALPDEAPETSEFAADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDD 618 (763)
T ss_pred hhhchhhhhhcCCCCcccccCCcCcccCccchhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCC
Confidence 5699999987652110
Q ss_pred --------------------------------------------------------------------------------
Q 009986 455 -------------------------------------------------------------------------------- 454 (521)
Q Consensus 455 -------------------------------------------------------------------------------- 454 (521)
T Consensus 619 p~vvp~~~~~a~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~nveravDWif~h~d~~~ed~~~~~s~~~~~~~~~~~~ 698 (763)
T KOG0944|consen 619 PFVVPGNSPKADAREVDEESVASIVSMGFSRNQAIKALKATNNNVERAVDWIFSHMDIPVEDAAEGESSSAIESESTPSG 698 (763)
T ss_pred ceecCCCCCccccCCCChhHheeeeeecCcHHHHHHHHHhcCccHHHHHHHHHhcccccccccCcCCCCCcchhhcCCcc
Confidence
Q ss_pred -CCCCCceEEEeEEEEEec-cCCCCeEEEEEEECCCCcEEEEeCceeeeeCcccccCCCcEEEEEEEeC
Q 009986 455 -NEKLRSKYDLIANIVHDG-KPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQQ 521 (521)
Q Consensus 455 -~~~~~~~Y~L~avI~H~G-~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYllfYeR~~ 521 (521)
....+.+|.|+|+|+|.| ++++||||||+|. .|+|+.|||++|.....+ ....+||+||+|..
T Consensus 699 ~~~dg~~~Y~L~a~IsHmGts~~sGHYV~hirK--egkWVlfNDeKv~~S~~p--pK~lgYvY~y~R~~ 763 (763)
T KOG0944|consen 699 TGKDGPGKYALFAFISHMGTSAHSGHYVCHIRK--EGKWVLFNDEKVAASQEP--PKDLGYVYLYTRIA 763 (763)
T ss_pred cCCCCCcceeEEEEEecCCCCCCCcceEEEEee--cCcEEEEcchhhhhccCC--hhhcceEEEEEecC
Confidence 112567899999999999 8999999999999 689999999999843333 37889999999963
No 4
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-56 Score=460.29 Aligned_cols=301 Identities=24% Similarity=0.393 Sum_probs=253.8
Q ss_pred CCccCCCCchhhHHHHHHhCchhHHHHhcCcccc-----cCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhc
Q 009986 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY-----RHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKAS 267 (521)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~-----~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s 267 (521)
||.|+|||||||||||+|+|+|+|+++++...+. .....++.++|..|+..+|.... ...++|..|+.+++..
T Consensus 2 Gl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~-~~~~~~~~~l~~~~~~- 79 (328)
T cd02660 2 GLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGD-RSPYGPINLLYLSWKH- 79 (328)
T ss_pred CccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCC-CCCcCHHHHHHHHHhh-
Confidence 9999999999999999999999999999864322 12345899999999999965432 5689999999999987
Q ss_pred ccCCCCCCcCCHHHHHHHHHHHHHHhhccCC-------CCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCC
Q 009986 268 KKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK-------KNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDH 340 (521)
Q Consensus 268 ~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~-------~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 340 (521)
.+.|.++.||||+|||.+||+.||+++.... ...++|.++|+|.+..+++|..
T Consensus 80 ~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~-------------------- 139 (328)
T cd02660 80 SRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEANDESHCNCIIHQTFSGSLQSSVTCQR-------------------- 139 (328)
T ss_pred chhhcccccccHHHHHHHHHHHHHHHhhcccccccccccCCceeEEecccEEEeeeEcCC--------------------
Confidence 6789999999999999999999999986542 2357899999999999999999
Q ss_pred CCCceeeeeecceeeecCCCCCCcchhhh-hcccCCCCchhhHhhhhcccc--------eeeccceeeeEEEEEEecCCC
Q 009986 341 DNITTETSRMPFLMLGLDLPPPPLFKDVM-EKNIIPQVPLFNILKKFDGET--------VTEVVRPHVARMRYRVTRLPK 411 (521)
Q Consensus 341 ~C~~~s~~~~~f~~LsL~lp~~~~~~~~~-~~~~~p~vsL~~~L~~f~~~~--------~~~c~~~~~a~k~~~i~~lP~ 411 (521)
|+..+.+.++|+.|+|+||......... .....++.+|++||++|...+ |..|+....+.++.+|.+||+
T Consensus 140 -C~~~s~~~e~f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~C~~C~~~~~~~~~~~i~~lP~ 218 (328)
T cd02660 140 -CGGVSTTVDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFAYKCSGCGSTQEATKQLSIKKLPP 218 (328)
T ss_pred -CCCccceecccceeeeeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCCccCCCCCCccceEEEEEecCCCc
Confidence 9999999999999999999764322111 112345689999999997643 666777778889999999999
Q ss_pred eeEEEEeeEEecC-ceeeeCCeeEeecCCccccccCCCCCC----CCCCCCCCceEEEeEEEEEeccCCCCeEEEEEEEC
Q 009986 412 YMILHMRRFTKNN-FFVEKNPTLVNFPVKNLELKDYIPLPT----PKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRK 486 (521)
Q Consensus 412 ~LiihlkRF~~~~-~~~~K~~~~V~FP~~~Ldl~~~~~~~~----~~~~~~~~~~Y~L~avI~H~G~~~~GHY~a~vk~~ 486 (521)
+|+|||+||.++. +...|+.+.|.||. .|||.+|+.... .........+|+|+|||+|.|+.++|||++|+|..
T Consensus 219 ~Lii~lkRf~~~~~~~~~K~~~~v~fp~-~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~~~~~~~ 297 (328)
T cd02660 219 VLCFQLKRFEHSLNKTSRKIDTYVQFPL-ELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQG 297 (328)
T ss_pred eeEEEEEeEEecCCCCCcCCCcEEeCCC-EechhhhcccccccccccccCCCCceEEEEEEEEeeccCCCCcEEEEEECC
Confidence 9999999999886 66789999999996 599999987421 11223446789999999999999999999999995
Q ss_pred CCCcEEEEeCceeeeeCcccccCCCcEEEEEE
Q 009986 487 SEELWYEMQDLHVSETLPQMVALSETYMQIYE 518 (521)
Q Consensus 487 ~~~~W~~~nD~~V~~v~~~~v~~~~aYllfYe 518 (521)
+++||.|||+.|++++.++|+..+||||||.
T Consensus 298 -~~~W~~~nD~~V~~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 298 -DGQWFKFDDAMITRVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred -CCcEEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence 4899999999999999999999999999994
No 5
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2e-56 Score=456.60 Aligned_cols=285 Identities=20% Similarity=0.274 Sum_probs=244.1
Q ss_pred CCccCCCCchhhHHHHHHhCchhHHHHhcCccc-----ccCCCChHHHHHHHHHHHHHccCC------------CCCcCC
Q 009986 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPEN-----YRHCKSPLVHRFGDLTRKIWHARN------------FKGQVS 255 (521)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~-----~~~~~~~l~~~l~~L~~~l~s~~~------------~~~~vs 255 (521)
||.|+|||||||||||+|+++|+||++|+...+ ......++.++|++|+..||+.+. ++..|+
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 999999999999999999999999999985321 112345799999999999988642 245799
Q ss_pred hHHHHHHHHHhcccCCCCCCcCCHHHHHHHHHHHHHHhhccCCCCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCC
Q 009986 256 PHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSD 335 (521)
Q Consensus 256 P~~ll~~i~~~s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~ 335 (521)
|..|+.+++.. ++.|..+.||||+|||++||+.|++++... ....+.++|+|.++.+++|..
T Consensus 81 p~~~~~~l~~~-~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~--~~~~~~~~f~~~~~~~i~C~~--------------- 142 (311)
T cd02658 81 PSMFKALIGKG-HPEFSTMRQQDALEFLLHLIDKLDRESFKN--LGLNPNDLFKFMIEDRLECLS--------------- 142 (311)
T ss_pred cHHHHHHHhcc-ChhhcccccccHHHHHHHHHHHHHHhhccc--ccCCchhheEEEeeEEEEcCC---------------
Confidence 99999999987 799999999999999999999999988632 234688999999999999999
Q ss_pred CCCCCCCCceeeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcccc-----eeeccceeeeEEEEEEecCC
Q 009986 336 GGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET-----VTEVVRPHVARMRYRVTRLP 410 (521)
Q Consensus 336 ~~~~~~C~~~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~-----~~~c~~~~~a~k~~~i~~lP 410 (521)
|+..+.+.++|++|+|++|.......+....+.+.++|++||+.|...+ |..|+..+.+.|+.+|.+||
T Consensus 143 ------C~~~s~~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~~~C~~C~~~~~a~k~~~i~~lP 216 (311)
T cd02658 143 ------CKKVKYTSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIEDFCSTCKEKTTATKTTGFKTFP 216 (311)
T ss_pred ------CCCEEEeecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCcccccccccCCCCcccEEEEEEeecCC
Confidence 9988999999999999999876443333344557789999999988754 45677778899999999999
Q ss_pred CeeEEEEeeEEec-CceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEEeEEEEEecc-CCCCeEEEEEEEC--
Q 009986 411 KYMILHMRRFTKN-NFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGK-PEGGFYRVFVQRK-- 486 (521)
Q Consensus 411 ~~LiihlkRF~~~-~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~-~~~GHY~a~vk~~-- 486 (521)
+||+|||+||.++ ++...|+...|.||.+ | ...+|+|+|||+|.|+ +++|||++|+|..
T Consensus 217 ~vLii~LkRF~~~~~~~~~Ki~~~v~~p~~-l----------------~~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~ 279 (311)
T cd02658 217 DYLVINMKRFQLLENWVPKKLDVPIDVPEE-L----------------GPGKYELIAFISHKGTSVHSGHYVAHIKKEID 279 (311)
T ss_pred ceEEEEeEEEEecCCCceEeeccccccCCc-C----------------CCCcEEEEEEEEccCCCCCCcceEEEEeCCCC
Confidence 9999999999984 6778999999999953 4 1245999999999994 8999999999995
Q ss_pred CCCcEEEEeCceeeeeCcccccCCCcEEEEEE
Q 009986 487 SEELWYEMQDLHVSETLPQMVALSETYMQIYE 518 (521)
Q Consensus 487 ~~~~W~~~nD~~V~~v~~~~v~~~~aYllfYe 518 (521)
.+++||+|||..|++++..+|...+||||||+
T Consensus 280 ~~~~W~~fnD~~V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 280 GEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred CCCCEEEecCceeEECCcccccCCcceEEEEC
Confidence 24899999999999999999999999999996
No 6
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-56 Score=456.27 Aligned_cols=264 Identities=25% Similarity=0.392 Sum_probs=231.4
Q ss_pred CCccCCCCchhhHHHHHHhCchhHHHHhcCcccccCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhcccCCC
Q 009986 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFR 272 (521)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s~~~F~ 272 (521)
||.|+|||||||||||+|+| .+++++|+.||++||......+.|+|..|+++++.. .+.|.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~-~~~f~ 61 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRE-NELFD 61 (300)
T ss_pred CccCCCcceehhHHHHHhhh------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhh-cCCCC
Confidence 99999999999999999998 568889999999999886555789999999999987 78999
Q ss_pred CCCcCCHHHHHHHHHHHHHHhhccCC----------------CCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCC
Q 009986 273 IGVQSNPVEFMSWLLNTLHSDLRNTK----------------KNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDG 336 (521)
Q Consensus 273 ~~~QqDA~EFl~~LLn~L~~~l~~~~----------------~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~ 336 (521)
+++||||+|||.+|||.||++++... ...++|.++|+|++.++++|..
T Consensus 62 ~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~---------------- 125 (300)
T cd02663 62 NYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLT---------------- 125 (300)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCC----------------
Confidence 99999999999999999999986421 2457799999999999999999
Q ss_pred CCCCCCCceeeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcccc---------eeeccceeeeEEEEEEe
Q 009986 337 GDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET---------VTEVVRPHVARMRYRVT 407 (521)
Q Consensus 337 ~~~~~C~~~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~---------~~~c~~~~~a~k~~~i~ 407 (521)
|+..+.+.++|+.|+|+||. ..+|++||+.|...+ |..|...+.++|+..|.
T Consensus 126 -----C~~~s~~~e~f~~Lsl~i~~--------------~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~ 186 (300)
T cd02663 126 -----CETVSSRDETFLDLSIDVEQ--------------NTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIK 186 (300)
T ss_pred -----CCCCccccceeEEeccCCCC--------------cCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEec
Confidence 99999999999999999986 368999999987644 55677777889999999
Q ss_pred cCCCeeEEEEeeEEecCc--eeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEEeEEEEEecc-CCCCeEEEEEE
Q 009986 408 RLPKYMILHMRRFTKNNF--FVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGK-PEGGFYRVFVQ 484 (521)
Q Consensus 408 ~lP~~LiihlkRF~~~~~--~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~-~~~GHY~a~vk 484 (521)
++|+||+|||+||.++.. ...|+.+.|.||+ .|+|.++.... ......|+|+|||+|.|+ +++|||+||+|
T Consensus 187 ~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~-~L~~~~~~~~~-----~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k 260 (300)
T cd02663 187 KLPKILALHLKRFKYDEQLNRYIKLFYRVVFPL-ELRLFNTTDDA-----ENPDRLYELVAVVVHIGGGPNHGHYVSIVK 260 (300)
T ss_pred cCCceeEEEEEeEEeecccCCceecCceEecCc-EEecccccccc-----CCCCeEEEEEEEEEEecCCCCCCceEEEEE
Confidence 999999999999998753 3789999999997 59998775311 122467999999999995 89999999999
Q ss_pred ECCCCcEEEEeCceeeeeCccccc--------CCCcEEEEEE
Q 009986 485 RKSEELWYEMQDLHVSETLPQMVA--------LSETYMQIYE 518 (521)
Q Consensus 485 ~~~~~~W~~~nD~~V~~v~~~~v~--------~~~aYllfYe 518 (521)
. +++||+|||+.|++++.+.|. ..+||||||+
T Consensus 261 ~--~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 261 S--HGGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred C--CCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence 9 899999999999999998885 5889999995
No 7
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-55 Score=449.84 Aligned_cols=280 Identities=27% Similarity=0.331 Sum_probs=240.6
Q ss_pred CCccCCCCchhhHHHHHHhCchhHHHHhcCcccc----cCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhcc
Q 009986 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY----RHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASK 268 (521)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~----~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s~ 268 (521)
||.|+|||||||||||+|+++|+|+++++..... .....+++++|+.|+..|+... ..++|.+|+..++.. .
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~---~~i~p~~~~~~l~~~-~ 76 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQ---EPVPPIEFLQLLRMA-F 76 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCC---CcCCcHHHHHHHHHH-C
Confidence 9999999999999999999999999999854321 1234689999999999999875 479999999999987 6
Q ss_pred cCCC------CCCcCCHHHHHHHHHHHHHHhhccCCCCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCC
Q 009986 269 KRFR------IGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDN 342 (521)
Q Consensus 269 ~~F~------~~~QqDA~EFl~~LLn~L~~~l~~~~~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C 342 (521)
+.|. +++||||+|||.+||+.|++++.......++|.++|+|++...++|.. |
T Consensus 77 ~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~---------------------C 135 (305)
T cd02657 77 PQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGAGSKGSFIDQLFGIELETKMKCTE---------------------S 135 (305)
T ss_pred cCcccccCCCCccccCHHHHHHHHHHHHHHHhcccCCCCcHHHHhhceEEEEEEEcCC---------------------C
Confidence 7884 559999999999999999999876444567899999999999999999 9
Q ss_pred C-ceeeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcccc----eeeccceeeeEEEEEEecCCCeeEEEE
Q 009986 343 I-TTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET----VTEVVRPHVARMRYRVTRLPKYMILHM 417 (521)
Q Consensus 343 ~-~~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~----~~~c~~~~~a~k~~~i~~lP~~Liihl 417 (521)
+ ..+.+.++|++|+|+||... ...+|+++|..++.++ |..|.....+.|+.+|.++|+||+|||
T Consensus 136 ~~~~~~~~e~f~~Lsl~i~~~~-----------~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~vLii~L 204 (305)
T cd02657 136 PDEEEVSTESEYKLQCHISITT-----------EVNYLQDGLKKGLEEEIEKHSPTLGRDAIYTKTSRISRLPKYLTVQF 204 (305)
T ss_pred CCCCccccccceEEEeecCCCc-----------ccccHHHHHHHhhhhhhhhcCcccCCCceEEEEEEeccCCcEEEEEE
Confidence 8 78999999999999998642 1246889998877654 344566666788999999999999999
Q ss_pred eeEEecC--ceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEEeEEEEEec-cCCCCeEEEEEEECCCCcEEEE
Q 009986 418 RRFTKNN--FFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDG-KPEGGFYRVFVQRKSEELWYEM 494 (521)
Q Consensus 418 kRF~~~~--~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~avI~H~G-~~~~GHY~a~vk~~~~~~W~~~ 494 (521)
+||.++. ....|+.+.|.||. .|||.+|+. ...+|+|+|||+|.| ++++|||+||+|...+++||+|
T Consensus 205 kRF~~~~~~~~~~Ki~~~v~fP~-~Ldl~~~~~---------~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~f 274 (305)
T cd02657 205 VRFFWKRDIQKKAKILRKVKFPF-ELDLYELCT---------PSGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKF 274 (305)
T ss_pred ECCccccccCceeecCcEEECCc-eEecccccC---------CCCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEEE
Confidence 9999764 34679999999996 599999986 135699999999999 6899999999999755999999
Q ss_pred eCceeeeeCcccccC-------CCcEEEEEE
Q 009986 495 QDLHVSETLPQMVAL-------SETYMQIYE 518 (521)
Q Consensus 495 nD~~V~~v~~~~v~~-------~~aYllfYe 518 (521)
||+.|+++++++|.. ..||||||+
T Consensus 275 dD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 275 DDDKVSEVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred ECCceEEeCHHHHHhhcCCCCCceEEEEEEC
Confidence 999999999999874 589999996
No 8
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-56 Score=450.46 Aligned_cols=383 Identities=21% Similarity=0.289 Sum_probs=307.8
Q ss_pred cCCCCCcccccccc---ccCCCCcccccccCCCCceEEecccCcccccC-----CCCCCcccccccCCccEEEEeCC---
Q 009986 101 VRRDCPYLDTVNRQ---VLDFDFEKFCSVSLSNLNVYACLVCGKYYQGR-----GQKSHAYTHSLEAGHHVYINLRT--- 169 (521)
Q Consensus 101 ~~~~c~~l~ti~r~---~l~~d~~k~Cs~~ls~~nl~~CL~CG~~~~G~-----~~~~ha~~H~~~~~H~v~v~l~t--- 169 (521)
....|+|.-..... +-..+.- .||.|.-..|||+||+||.+.||| ++++||+.||.+++||++|++.+
T Consensus 151 E~~tC~H~~n~~~~s~~~~ni~~~-~Cs~CDl~~nLW~Cl~CG~vgCGR~QyG~~GngHAlsHY~~t~Hplavkl~Sls~ 229 (749)
T COG5207 151 EEVTCVHGCNEGPSSIEMGNIGGL-KCSLCDLKTNLWVCLSCGYVGCGRMQYGAEGNGHALSHYEETQHPLAVKLPSLSK 229 (749)
T ss_pred hcccccccCCCCCCcccccccCCc-eeccccchhceEEEEecCcccccceeecCCCCcchhhhhhccCCceEEEcccccc
Confidence 34689997755432 2234553 466666669999999999999988 35999999999999999999985
Q ss_pred --CceEecCCCCcccCCC------------------------hhhh--------------------------hhcCCccC
Q 009986 170 --EKVYCLPDGYEINDPS------------------------LEDI--------------------------RHVGLNNI 197 (521)
Q Consensus 170 --~~vyc~~~~~~v~d~~------------------------l~di--------------------------~~~GL~Nl 197 (521)
.++|||.|++++..+. |.++ .++||.|+
T Consensus 230 ~~~diyCY~CD~e~R~~~n~n~~s~~~~fGinIa~~~~~Eksl~~lq~eqn~nw~F~~~~~~~~sk~~~~ps~~~GliNl 309 (749)
T COG5207 230 EDCDIYCYLCDSEIRSRYNSNENSVTIDFGINIADGKTEEKSLRKLQSEQNANWEFLEKKRAPESKGESVPSPYVGLINL 309 (749)
T ss_pred ccccEEEEecCcccccCCcccccceeeeeccchhhccchHHHHHHHHHhhhcCcchhccccCchhhcccCCCCccceEec
Confidence 8999999999964321 1111 12499999
Q ss_pred CCCchhhHHHHHHhCchhHHHHhcCcccc-----cCCCChHHHHHHHHHHHHHccC--CCCCcCChHHHHHHHHHhcccC
Q 009986 198 KETDFVNVTIQSLMRVTPLRNFFLIPENY-----RHCKSPLVHRFGDLTRKIWHAR--NFKGQVSPHEFLQAVMKASKKR 270 (521)
Q Consensus 198 GNTCYmNsVLQ~L~~ip~fr~~~l~~~~~-----~~~~~~l~~~l~~L~~~l~s~~--~~~~~vsP~~ll~~i~~~s~~~ 270 (521)
||+||+|||||+|++...+...++...+. ..+..+|.|++.+|+.+|.... .+...|+|..|+..|++. ++.
T Consensus 310 GNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~igq~-h~e 388 (749)
T COG5207 310 GNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLIGQD-HPE 388 (749)
T ss_pred CCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHHHHHcCC-chh
Confidence 99999999999999998887666544432 2345689999999999988754 356789999999999998 899
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhhccCCCCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCceeeeee
Q 009986 271 FRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRM 350 (521)
Q Consensus 271 F~~~~QqDA~EFl~~LLn~L~~~l~~~~~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s~~~~ 350 (521)
|...+||||+|||.+||+.|++..... ..+.|.++|.++++.++.|.. |+.++++++
T Consensus 389 Fg~~~QQDA~EFLlfLL~kirk~~~S~--~~~~It~lf~Fe~e~rlsC~~---------------------C~~v~ySye 445 (749)
T COG5207 389 FGKFAQQDAHEFLLFLLEKIRKGERSY--LIPPITSLFEFEVERRLSCSG---------------------CMDVSYSYE 445 (749)
T ss_pred hhhhhhhhHHHHHHHHHHHHhhccchh--cCCCcchhhhhhhcceecccc---------------------ccccccccc
Confidence 999999999999999999999865433 345688999999999999999 999999999
Q ss_pred cceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcccc-----eeeccceeeeEEEEEEecCCCeeEEEEeeEEecCc
Q 009986 351 PFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET-----VTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNF 425 (521)
Q Consensus 351 ~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~-----~~~c~~~~~a~k~~~i~~lP~~LiihlkRF~~~~~ 425 (521)
+..++.+.+... ...+++..+++.|+... |..|+.+..|.++..|++||+||||+..||+..++
T Consensus 446 ~~~~i~i~le~n-----------~E~~di~~~v~a~f~pdtiE~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~lqny 514 (749)
T COG5207 446 SMLMICIFLEGN-----------DEPQDIRKSVEAFFLPDTIEWSCENCKGKKKASRKPFIKSLPKYLILQVGRYSLQNY 514 (749)
T ss_pred ceEEEEeecccC-----------cchhhHHHHHHheECccceeeehhhhcCcccccccchhhccCceeEEecceeeccce
Confidence 998888776542 23468889999888644 55688888888889999999999999999999999
Q ss_pred eeeeCCeeEeecC-CccccccCCCCCCCCC--------------------------------------------------
Q 009986 426 FVEKNPTLVNFPV-KNLELKDYIPLPTPKE-------------------------------------------------- 454 (521)
Q Consensus 426 ~~~K~~~~V~FP~-~~Ldl~~~~~~~~~~~-------------------------------------------------- 454 (521)
.++|+..++...- ..++++.|++...+..
T Consensus 515 ~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPdedE~~t~Nqs~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWL 594 (749)
T COG5207 515 KVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDEDEAFTDNQSLIRQLVDMGFPEEDAARALGITGNQDAESAMNWL 594 (749)
T ss_pred eehhccCceEEccccccchhhHhhccCCcccccCCccccccCchHHHHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHH
Confidence 9999887776652 2378888877521100
Q ss_pred --------------------------------------------------------------------------------
Q 009986 455 -------------------------------------------------------------------------------- 454 (521)
Q Consensus 455 -------------------------------------------------------------------------------- 454 (521)
T Consensus 595 FqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal~~~n~d~~r~V~w~~N~~D~tF~EP~v~~eeq 674 (749)
T COG5207 595 FQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPNLCRKALMDMNTDSKRRVVWCINDDDGTFPEPEVPNEEQ 674 (749)
T ss_pred HhhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCHHHHHHHHHHccCCchheEEEEEeCCCCCCCCCCCCchhh
Confidence
Q ss_pred ------CCCCCceEEEeEEEEEec-cCCCCeEEEEEEECCCC--cEEEEeCceeeeeCcccccCCCcEEEEEEE
Q 009986 455 ------NEKLRSKYDLIANIVHDG-KPEGGFYRVFVQRKSEE--LWYEMQDLHVSETLPQMVALSETYMQIYEQ 519 (521)
Q Consensus 455 ------~~~~~~~Y~L~avI~H~G-~~~~GHY~a~vk~~~~~--~W~~~nD~~V~~v~~~~v~~~~aYllfYeR 519 (521)
+.....-|.|.|||+|.| ++++|||++|||....+ +|+.+||.++..++.-+++....||+||+|
T Consensus 675 qqk~~~~~STa~PYaLtAvI~HkG~s~haGHYv~fIrk~~~~K~kWvl~nDek~v~~~svE~~k~nGYiylf~R 748 (749)
T COG5207 675 QQKKDLGYSTAKPYALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKR 748 (749)
T ss_pred hhcccccccccCcccceeEEeccCCcccccceEEEEecccCcceeEEEEccchheehhhHHHHhhCCeEEEEec
Confidence 000233499999999999 89999999999996555 589999999999998888899999999998
No 9
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.6e-56 Score=446.16 Aligned_cols=251 Identities=26% Similarity=0.420 Sum_probs=221.0
Q ss_pred CCccCCCCchhhHHHHHHhCchhHHHHhcCcccccCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhcccCCC
Q 009986 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFR 272 (521)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s~~~F~ 272 (521)
||.|+|||||||||||+|+|+|+||++++. +|.+|+..++.. ++.|.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~--------------------------------~P~~~~~~l~~~-~~~f~ 47 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE--------------------------------TPKELFSQVCRK-APQFK 47 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH--------------------------------CHHHHHHHHHHh-hHhhc
Confidence 999999999999999999999999999983 788999999887 78999
Q ss_pred CCCcCCHHHHHHHHHHHHHHhhccCCCCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCceeeeeecc
Q 009986 273 IGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPF 352 (521)
Q Consensus 273 ~~~QqDA~EFl~~LLn~L~~~l~~~~~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s~~~~~f 352 (521)
.++||||+|||.+||+.|+ ++|.++|+|+++.+++|.. |+..+.+.++|
T Consensus 48 ~~~QqDA~Efl~~lld~l~----------~~i~~~F~G~~~~~i~C~~---------------------C~~~s~~~E~f 96 (279)
T cd02667 48 GYQQQDSHELLRYLLDGLR----------TFIDSIFGGELTSTIMCES---------------------CGTVSLVYEPF 96 (279)
T ss_pred CCchhhHHHHHHHHHHHHH----------HhhhhhcceEEEEEEEcCC---------------------CCCEeCccccc
Confidence 9999999999999999999 3588999999999999999 99999999999
Q ss_pred eeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcccce------eeccceeeeEEEEEEecCCCeeEEEEeeEEecCc-
Q 009986 353 LMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETV------TEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNF- 425 (521)
Q Consensus 353 ~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~~------~~c~~~~~a~k~~~i~~lP~~LiihlkRF~~~~~- 425 (521)
+.|+|+++.. ....++|++||+.|...+. ..|..+..|+|+..|.++|+||+|||+||.++..
T Consensus 97 ~~L~Lp~~~~----------~~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~a~k~~~i~~~P~~Lii~LkRF~~~~~~ 166 (279)
T cd02667 97 LDLSLPRSDE----------IKSECSIESCLKQFTEVEILEGNNKFACENCTKAKKQYLISKLPPVLVIHLKRFQQPRSA 166 (279)
T ss_pred eEEecCCCcc----------cCCCCCHHHHHHhhcCeeEecCCCcccCCccCceeeEeEhhhCCCeEEEEEeccccCccc
Confidence 9999987642 1246899999999886542 4566666689999999999999999999998753
Q ss_pred eeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEEeEEEEEeccCCCCeEEEEEEECC------------------
Q 009986 426 FVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKS------------------ 487 (521)
Q Consensus 426 ~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~a~vk~~~------------------ 487 (521)
...|+.+.|.||. .|||++|+.............+|+|+|||+|.|+.++|||+||+|...
T Consensus 167 ~~~Ki~~~v~fP~-~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~ 245 (279)
T cd02667 167 NLRKVSRHVSFPE-ILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRLSDLTKSKPAADEA 245 (279)
T ss_pred CceecCceEeCCC-ccchhhccCccccccccCCCceEEEEEEEEEeCCCCCCEeEEEEEcCccccccccccccccccccC
Confidence 6789999999995 699999997532222233457899999999999889999999999854
Q ss_pred ---CCcEEEEeCceeeeeCcccccCCCcEEEEEE
Q 009986 488 ---EELWYEMQDLHVSETLPQMVALSETYMQIYE 518 (521)
Q Consensus 488 ---~~~W~~~nD~~V~~v~~~~v~~~~aYllfYe 518 (521)
+++||+|||+.|++++.+.|+..+|||||||
T Consensus 246 ~~~~~~W~~~dD~~V~~v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 246 GPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279 (279)
T ss_pred CCCCCcEEEEECCccEECCHHHhccCCcEEEEeC
Confidence 6899999999999999999999999999996
No 10
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-56 Score=462.96 Aligned_cols=282 Identities=25% Similarity=0.428 Sum_probs=248.4
Q ss_pred cCCccCCCCchhhHHHHHHhCchhHHHHhcCcccccCC---CChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhcc
Q 009986 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHC---KSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASK 268 (521)
Q Consensus 192 ~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~---~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s~ 268 (521)
.||.|+|||||+|||||||.++|||.+|||...+...| .-|++|+|...+....... ...|+|..|+..+... .
T Consensus 109 ~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~~~~--g~pisP~~i~s~L~~I-~ 185 (545)
T KOG1865|consen 109 AGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRALHNP--GHPISPSQILSNLRNI-S 185 (545)
T ss_pred cceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHhcCC--CCccChHHHHHhhhhh-c
Confidence 49999999999999999999999999999976655443 4589999998887776655 2489999999999998 7
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHHHhhccC-C------CCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCC
Q 009986 269 KRFRIGVQSNPVEFMSWLLNTLHSDLRNT-K------KNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHD 341 (521)
Q Consensus 269 ~~F~~~~QqDA~EFl~~LLn~L~~~l~~~-~------~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ 341 (521)
..|..|+|.||||||+++++.|+...-+. . ...++|+++|+|.|++.++|..
T Consensus 186 ~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~~~~sq~ttlv~~iFGG~LrS~vkC~~--------------------- 244 (545)
T KOG1865|consen 186 AHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQVDPRSQDTTLVHQIFGGYLRSQIKCLH--------------------- 244 (545)
T ss_pred ccccCCchhhHHHHHHHHHHHHHHhhcCCCccCCcccccceehhhhhccchhhceeccc---------------------
Confidence 99999999999999999999999986321 1 3678999999999999999999
Q ss_pred CCceeeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcccc---------eeeccceeeeEEEEEEecCCCe
Q 009986 342 NITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET---------VTEVVRPHVARMRYRVTRLPKY 412 (521)
Q Consensus 342 C~~~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~---------~~~c~~~~~a~k~~~i~~lP~~ 412 (521)
|..++.++++.++|+|+|... .+|.++|+.|+..+ |..|+.+..|.|++.|.++|+|
T Consensus 245 C~~vS~tyE~~~dltvei~d~--------------~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnV 310 (545)
T KOG1865|consen 245 CKGVSDTYEPYLDLTLEIQDA--------------SSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNV 310 (545)
T ss_pred CCCcccccccccceEEEeccc--------------hhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCce
Confidence 999999999999999999732 47888888876533 6677888889999999999999
Q ss_pred eEEEEeeEEecCceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEEeEEEEEec-cCCCCeEEEEEEECCCCcE
Q 009986 413 MILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDG-KPEGGFYRVFVQRKSEELW 491 (521)
Q Consensus 413 LiihlkRF~~~~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~avI~H~G-~~~~GHY~a~vk~~~~~~W 491 (521)
|+||||||+. +...||...|.||+ .|||.||++.+. ..+..|.|+|||+|.| +..+|||++|||.. +|.|
T Consensus 311 LTi~LKRF~~--~~~gKI~K~I~fPE-~LDl~PyMS~~~-----e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~-~g~W 381 (545)
T KOG1865|consen 311 LTLHLKRFSN--GTGGKISKPVSFPE-TLDLQPYMSQPN-----EGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQ-NGQW 381 (545)
T ss_pred EEEeeehhcc--CcccccccccCCcc-cccccccccCCC-----CCCceEEEEEEEEeccccccCCceEEEEEcC-CCce
Confidence 9999999986 66789999999995 699999998332 2356799999999999 88999999999996 8899
Q ss_pred EEEeCceeeeeCcccccCCCcEEEEEEEe
Q 009986 492 YEMQDLHVSETLPQMVALSETYMQIYEQQ 520 (521)
Q Consensus 492 ~~~nD~~V~~v~~~~v~~~~aYllfYeR~ 520 (521)
|.+||+.|+.++.+.|+..+||||||.|.
T Consensus 382 y~~DDS~V~~~~~~~VLsq~AYmLfY~R~ 410 (545)
T KOG1865|consen 382 YKMDDSEVTQSSIESVLSQQAYILFYARK 410 (545)
T ss_pred EEccCceeeeccccceecccceEEEEEee
Confidence 99999999999999999999999999995
No 11
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.5e-55 Score=450.03 Aligned_cols=277 Identities=21% Similarity=0.329 Sum_probs=235.8
Q ss_pred CCccCCCCchhhHHHHHHhCchhHHHHhcCcccccC------------CCChHHHHHHHHHHHHHccCCCCCcCChHHHH
Q 009986 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRH------------CKSPLVHRFGDLTRKIWHARNFKGQVSPHEFL 260 (521)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~------------~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll 260 (521)
||.|+|||||||||||+|+|+|+||++++....... ...+++++|+.||..||.+. ...++|..|+
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~--~~~i~p~~f~ 78 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGN--RSVVDPSGFV 78 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCC--CceEChHHHH
Confidence 999999999999999999999999999985432110 13579999999999999887 5789999999
Q ss_pred HHHHHhcccCCCCCCcCCHHHHHHHHHHHHHHhhccC--CCCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCC
Q 009986 261 QAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNT--KKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGD 338 (521)
Q Consensus 261 ~~i~~~s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~--~~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~ 338 (521)
+.+. |..++||||+|||.+||+.|+.++... ....+++.++|.|++..+++|..
T Consensus 79 ~~l~------~~~~~QqDa~EFl~~lLd~L~~~l~~~~~~~~~~~i~~~F~G~~~~~~~C~~------------------ 134 (324)
T cd02668 79 KALG------LDTGQQQDAQEFSKLFLSLLEAKLSKSKNPDLKNIVQDLFRGEYSYVTQCSK------------------ 134 (324)
T ss_pred HHhC------CCCccccCHHHHHHHHHHHHHHHHhhccCCcccchhhhhcceEEEEEEEeCC------------------
Confidence 8873 557899999999999999999998753 22457899999999999999999
Q ss_pred CCCCCceeeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcccc---------eeeccceeeeEEEEEEecC
Q 009986 339 DHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET---------VTEVVRPHVARMRYRVTRL 409 (521)
Q Consensus 339 ~~~C~~~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~---------~~~c~~~~~a~k~~~i~~l 409 (521)
|+..+.+.++|+.|+|++|.. .+|+++|+.|...+ |..|.....+.|+..|.+|
T Consensus 135 ---C~~~s~~~e~f~~l~l~i~~~--------------~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~l 197 (324)
T cd02668 135 ---CGRESSLPSKFYELELQLKGH--------------KTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTL 197 (324)
T ss_pred ---CCCccccccccEEEEEEeccc--------------CCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCC
Confidence 999999999999999999852 57888998877532 5567777788999999999
Q ss_pred CCeeEEEEeeEEecC--ceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEEeEEEEEec-cCCCCeEEEEEEEC
Q 009986 410 PKYMILHMRRFTKNN--FFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDG-KPEGGFYRVFVQRK 486 (521)
Q Consensus 410 P~~LiihlkRF~~~~--~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~avI~H~G-~~~~GHY~a~vk~~ 486 (521)
|+||+|||+||.++. +...|+++.|.||. .|||.+|+.... ....+|+|+|||+|.| ++++|||+||+|..
T Consensus 198 P~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~-~Ldl~~~~~~~~-----~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~ 271 (324)
T cd02668 198 PPTLNFQLLRFVFDRKTGAKKKLNASISFPE-ILDMGEYLAESD-----EGSYVYELSGVLIHQGVSAYSGHYIAHIKDE 271 (324)
T ss_pred CCeEEEEEEcceeecccCcceeCCcEEECCC-eEechhhccccc-----CCCcEEEEEEEEEEcCCCCCCEeeEEEEECC
Confidence 999999999999763 56789999999995 699999986321 2346799999999999 58999999999997
Q ss_pred CCCcEEEEeCceeeeeCcccc---------------------cCCCcEEEEEE
Q 009986 487 SEELWYEMQDLHVSETLPQMV---------------------ALSETYMQIYE 518 (521)
Q Consensus 487 ~~~~W~~~nD~~V~~v~~~~v---------------------~~~~aYllfYe 518 (521)
.+++||.|||+.|++++.+.| ....||||||+
T Consensus 272 ~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 272 QTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred CCCcEEEEECCceEEcCHHHhhcccccccccccccccCCCccccCceEEEEeC
Confidence 678999999999999976655 34679999996
No 12
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.5e-53 Score=435.99 Aligned_cols=280 Identities=20% Similarity=0.270 Sum_probs=225.8
Q ss_pred hhcCCccCCCCchhhHHHHHHhCchhHHHHhcCcccccCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhccc
Q 009986 190 RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKK 269 (521)
Q Consensus 190 ~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s~~ 269 (521)
.++||.|+|||||||||||+|+|+|+||+.++....... .....+.+..+++++|+.. ...++|..|+++++.. ++
T Consensus 23 ~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~-~~~~~q~~~~~l~~~~~~~--~~~~~P~~~~~~l~~~-~~ 98 (332)
T cd02671 23 PFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLIS-SVEQLQSSFLLNPEKYNDE--LANQAPRRLLNALREV-NP 98 (332)
T ss_pred CCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcccC-cHHHHHHHHHHHHHHHhhc--ccccCHHHHHHHHHHh-cc
Confidence 357999999999999999999999999999874321111 1122333445566777654 3456799999999987 79
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHhhccCCCCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCceeeee
Q 009986 270 RFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSR 349 (521)
Q Consensus 270 ~F~~~~QqDA~EFl~~LLn~L~~~l~~~~~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s~~~ 349 (521)
.|..+.||||+|||.+||+.|+. +|.++|+|++..+++|.. |+..+.+.
T Consensus 99 ~f~~~~QQDA~EFl~~LLd~L~~----------~i~~~F~g~~~~~~~C~~---------------------C~~~s~~~ 147 (332)
T cd02671 99 MYEGYLQHDAQEVLQCILGNIQE----------LVEKDFQGQLVLRTRCLE---------------------CETFTERR 147 (332)
T ss_pred ccCCccccCHHHHHHHHHHHHHH----------HHHhhhceEEEEEEEeCC---------------------CCCeecee
Confidence 99999999999999999999995 578999999999999999 99999999
Q ss_pred ecceeeecCCCCCCcchhhhhcc-----cCCCCchhhHhhhhcccc---------eeeccceeeeEEEEEEecCCCeeEE
Q 009986 350 MPFLMLGLDLPPPPLFKDVMEKN-----IIPQVPLFNILKKFDGET---------VTEVVRPHVARMRYRVTRLPKYMIL 415 (521)
Q Consensus 350 ~~f~~LsL~lp~~~~~~~~~~~~-----~~p~vsL~~~L~~f~~~~---------~~~c~~~~~a~k~~~i~~lP~~Lii 415 (521)
++|++|+|+||....-+...... ..+..+|++||+.|+..+ |..|+..+.|+|+..|.++|+||+|
T Consensus 148 E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i 227 (332)
T cd02671 148 EDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITI 227 (332)
T ss_pred cccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEEE
Confidence 99999999999764221111111 112369999999987544 4456677889999999999999999
Q ss_pred EEeeEEecC------ceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEEeEEEEEec-cCCCCeEEEEEEECCC
Q 009986 416 HMRRFTKNN------FFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDG-KPEGGFYRVFVQRKSE 488 (521)
Q Consensus 416 hlkRF~~~~------~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~avI~H~G-~~~~GHY~a~vk~~~~ 488 (521)
||+||..+. ....|+.+.|.||+. |+|.++.... ....|+|+|||+|.| ++++|||+||+|
T Consensus 228 ~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~-L~~~~~~~~~-------~~~~Y~L~~VI~H~G~~~~~GHY~a~vr---- 295 (332)
T cd02671 228 HLKCFAANGSEFDCYGGLSKVNTPLLTPLK-LSLEEWSTKP-------KNDVYRLFAVVMHSGATISSGHYTAYVR---- 295 (332)
T ss_pred EeeeeccccccccccCCceecCccccCccc-cccccccCCC-------CCCeEEEEEEEEEcCCCCCCCeEEEEEE----
Confidence 999999753 246899999999974 9998876421 246799999999999 589999999999
Q ss_pred CcEEEEeCceeeeeCccccc---------CCCcEEEEEE
Q 009986 489 ELWYEMQDLHVSETLPQMVA---------LSETYMQIYE 518 (521)
Q Consensus 489 ~~W~~~nD~~V~~v~~~~v~---------~~~aYllfYe 518 (521)
||+|||+.|++++.+++. ..+||||||+
T Consensus 296 --W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 296 --WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred --EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 999999999999877654 3689999995
No 13
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-54 Score=449.34 Aligned_cols=299 Identities=27% Similarity=0.451 Sum_probs=261.0
Q ss_pred CCccCCCCchhhHHHHHHhCchhHHHHhcCcc--------cccCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHH
Q 009986 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPE--------NYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVM 264 (521)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~--------~~~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~ 264 (521)
||.|+||||||||.||||.|++.||+||+..+ +.....+.++.+|+.|+++++.++. ..++|..|+..|+
T Consensus 267 GL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~--haf~Ps~fK~tIG 344 (823)
T COG5560 267 GLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNL--HAFTPSGFKKTIG 344 (823)
T ss_pred ceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccc--cccChHHHHHHHh
Confidence 99999999999999999999999999999632 2234456889999999999998874 7899999999999
Q ss_pred HhcccCCCCCCcCCHHHHHHHHHHHHHHhhccC-------C------------------------CCCCccccccCcEEE
Q 009986 265 KASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNT-------K------------------------KNTSIIYECFQGELE 313 (521)
Q Consensus 265 ~~s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~-------~------------------------~~~sii~~~F~g~l~ 313 (521)
.. +..|.|+.|||++||+.+|||.||++|++. + ++.++|.++|+|.++
T Consensus 345 ~f-n~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmyK 423 (823)
T COG5560 345 SF-NEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYK 423 (823)
T ss_pred hh-HHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Confidence 98 899999999999999999999999999731 1 278999999999999
Q ss_pred EEEEecCCCCCCCCCCcCCCCCCCCCCCCCceeeeeecceeeecCCCCCCcc----------------------------
Q 009986 314 VVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLF---------------------------- 365 (521)
Q Consensus 314 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s~~~~~f~~LsL~lp~~~~~---------------------------- 365 (521)
+++.|.. |+.++++++||++|+||||.....
T Consensus 424 STL~Cp~---------------------C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~ 482 (823)
T COG5560 424 STLTCPG---------------------CGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRG 482 (823)
T ss_pred ceeeccC---------------------cCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHH
Confidence 9999999 999999999999999999973210
Q ss_pred -----------------------------------------------------------------------h--------
Q 009986 366 -----------------------------------------------------------------------K-------- 366 (521)
Q Consensus 366 -----------------------------------------------------------------------~-------- 366 (521)
+
T Consensus 483 lk~lv~~~~gk~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~p 562 (823)
T COG5560 483 LKKLVDAEYGKLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDP 562 (823)
T ss_pred HHHHHHHHhccCCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCc
Confidence 0
Q ss_pred -------------hhh--------h----------------------------------------c--------c-----
Q 009986 367 -------------DVM--------E----------------------------------------K--------N----- 372 (521)
Q Consensus 367 -------------~~~--------~----------------------------------------~--------~----- 372 (521)
+.+ . + +
T Consensus 563 flqlnv~~~~~i~~kLvkE~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~v 642 (823)
T COG5560 563 FLQLNVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAV 642 (823)
T ss_pred ceEEEeecchhhHHHHHHHHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcce
Confidence 000 0 0 0
Q ss_pred ----------------------------cCCCCchhhHhhhhcccc---------eeeccceeeeEEEEEEecCCCeeEE
Q 009986 373 ----------------------------IIPQVPLFNILKKFDGET---------VTEVVRPHVARMRYRVTRLPKYMIL 415 (521)
Q Consensus 373 ----------------------------~~p~vsL~~~L~~f~~~~---------~~~c~~~~~a~k~~~i~~lP~~Lii 415 (521)
-.+.++|++||..|.+.+ |+.|+..+.|+|++.|+++|.||||
T Consensus 643 vi~cew~ek~y~~lFsy~~lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLii 722 (823)
T COG5560 643 VISCEWEEKRYLSLFSYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILII 722 (823)
T ss_pred EEeeeccccchhhhhcCCccchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheee
Confidence 014589999999998754 7788888999999999999999999
Q ss_pred EEeeEEecCceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEEeEEEEEeccCCCCeEEEEEEECCCCcEEEEe
Q 009986 416 HMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQ 495 (521)
Q Consensus 416 hlkRF~~~~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~a~vk~~~~~~W~~~n 495 (521)
|||||+..+..+.|+.+.|.||+..|||+.+...-. .....|+|+||=.|+|.+.+|||+||+|+.++++||+||
T Consensus 723 hLkRFss~rsfrdKiddlVeyPiddldLs~~~~~~~-----~p~liydlyavDNHygglsgGHYtAyarn~~n~~wy~fd 797 (823)
T COG5560 723 HLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVD-----DPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFD 797 (823)
T ss_pred ehhhhhhcccchhhhhhhhccccccccccceEEeec-----CcceEEEeeeccccccccCCcceeeeeecccCCceEEec
Confidence 999999888889999999999999999998876321 112679999999999999999999999999999999999
Q ss_pred CceeeeeCcccccCCCcEEEEEEEe
Q 009986 496 DLHVSETLPQMVALSETYMQIYEQQ 520 (521)
Q Consensus 496 D~~V~~v~~~~v~~~~aYllfYeR~ 520 (521)
|+.|++|.+++...+.||+|||+|+
T Consensus 798 Dsritevdped~vtssaYvLFyrrk 822 (823)
T COG5560 798 DSRITEVDPEDSVTSSAYVLFYRRK 822 (823)
T ss_pred CccccccCccccccceeEEEEEEec
Confidence 9999999999999999999999997
No 14
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.6e-53 Score=434.09 Aligned_cols=272 Identities=24% Similarity=0.365 Sum_probs=223.8
Q ss_pred CCccCCCCchhhHHHHHHhCchhHHHHhcCcccc-cCCCChHHHHHHHHHHHHHccCCCCCcCChHH-HHHHHHHhcccC
Q 009986 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY-RHCKSPLVHRFGDLTRKIWHARNFKGQVSPHE-FLQAVMKASKKR 270 (521)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~-~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~-ll~~i~~~s~~~ 270 (521)
||.|+||||||||+||+|+++|+||++++..... ......+..+|..++..|.... ...+.|.. |+..++ .+.
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~~L~~lf~~l~~~~--~~~~~~~~~~l~~~~---~~~ 75 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGDSQSVMKKLQLLQAHLMHTQ--RRAEAPPDYFLEASR---PPW 75 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccccCCcchHHHHHHHHHHHHhhcC--CcccCCHHHHHHHhc---ccc
Confidence 9999999999999999999999999999964321 1234567888888887765543 34566665 776653 467
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhhccCCCCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCceeeeee
Q 009986 271 FRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRM 350 (521)
Q Consensus 271 F~~~~QqDA~EFl~~LLn~L~~~l~~~~~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s~~~~ 350 (521)
|..+.||||+|||.+||+.|+ ++|.++|+|++..+++|.. |+..+.+.+
T Consensus 76 f~~~~QqDa~EFl~~lLd~l~----------~~i~~~F~G~~~~~i~C~~---------------------C~~~s~~~e 124 (327)
T cd02664 76 FTPGSQQDCSEYLRYLLDRLH----------TLIEKMFGGKLSTTIRCLN---------------------CNSTSARTE 124 (327)
T ss_pred cCCCCcCCHHHHHHHHHHHHH----------HHHHhhCcEEeEeEEEcCC---------------------CCCEecccc
Confidence 999999999999999999999 3689999999999999999 999999999
Q ss_pred cceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhccc---------ceeeccceeeeEEEEEEecCCCeeEEEEeeEE
Q 009986 351 PFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGE---------TVTEVVRPHVARMRYRVTRLPKYMILHMRRFT 421 (521)
Q Consensus 351 ~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~---------~~~~c~~~~~a~k~~~i~~lP~~LiihlkRF~ 421 (521)
+|..|+|+|| +|.+||+.|... .|..|...+.+.|+.+|.++|+||+|||+||.
T Consensus 125 ~f~~l~L~i~-----------------sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~ 187 (327)
T cd02664 125 RFRDLDLSFP-----------------SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFS 187 (327)
T ss_pred cceeeecCCC-----------------CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeE
Confidence 9999999987 467788777642 25567777789999999999999999999998
Q ss_pred ecC--ceeeeCCeeEeecCCccccccCCCCCCC--------------CCCCCCCceEEEeEEEEEec-cCCCCeEEEEEE
Q 009986 422 KNN--FFVEKNPTLVNFPVKNLELKDYIPLPTP--------------KENEKLRSKYDLIANIVHDG-KPEGGFYRVFVQ 484 (521)
Q Consensus 422 ~~~--~~~~K~~~~V~FP~~~Ldl~~~~~~~~~--------------~~~~~~~~~Y~L~avI~H~G-~~~~GHY~a~vk 484 (521)
++. +...|+.+.|.||. .|||..++..... .........|+|+|||+|.| ++++|||+||+|
T Consensus 188 ~~~~~~~~~Ki~~~v~fp~-~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r 266 (327)
T cd02664 188 YDQKTHVREKIMDNVSINE-VLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYAR 266 (327)
T ss_pred EccccCcceecCceEecCC-EEecCccccccccccccccccccccccccccCCCceEEEEEEEEEccCCCCCcceEEEEe
Confidence 764 45689999999996 5999988742110 01112356899999999999 589999999999
Q ss_pred ECC--------------------CCcEEEEeCceeeeeCcccccC-------CCcEEEEEE
Q 009986 485 RKS--------------------EELWYEMQDLHVSETLPQMVAL-------SETYMQIYE 518 (521)
Q Consensus 485 ~~~--------------------~~~W~~~nD~~V~~v~~~~v~~-------~~aYllfYe 518 (521)
... .+.||.|||+.|++++.+.|.. ..||||||+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 267 DQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred cCCccccccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence 853 3789999999999999999876 899999995
No 15
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.2e-52 Score=422.95 Aligned_cols=281 Identities=25% Similarity=0.407 Sum_probs=239.8
Q ss_pred hcCCccCCCCchhhHHHHHHhCchhHHHHhcCcccc---cCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhc
Q 009986 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY---RHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKAS 267 (521)
Q Consensus 191 ~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~---~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s 267 (521)
++||.|+|||||||||||+|+|+|+|+++++...+. .....++.++|..++..++..+ ...+.|..|+.++...
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~p~~~~~~l~~~- 77 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASS--GPGSAPRIFSSNLKQI- 77 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCC--CCccChHHHHHHHHHH-
Confidence 369999999999999999999999999999853322 1223578999999998887655 3678999999999887
Q ss_pred ccCCCCCCcCCHHHHHHHHHHHHHHhhccCC----------CCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCC
Q 009986 268 KKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK----------KNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGG 337 (521)
Q Consensus 268 ~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~----------~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~ 337 (521)
.+.|..+.||||+|||.+||+.|+.++.... ...+++.++|+|++..+++|..
T Consensus 78 ~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~----------------- 140 (304)
T cd02661 78 SKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLN----------------- 140 (304)
T ss_pred HHhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCC-----------------
Confidence 7889999999999999999999998864321 2357899999999999999999
Q ss_pred CCCCCCceeeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhccc---------ceeeccceeeeEEEEEEec
Q 009986 338 DDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGE---------TVTEVVRPHVARMRYRVTR 408 (521)
Q Consensus 338 ~~~~C~~~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~---------~~~~c~~~~~a~k~~~i~~ 408 (521)
|+..+.+.++|+.|+|++|.. .+|.++|+.|+.. .|..|.....+.++.+|.+
T Consensus 141 ----C~~~s~~~e~~~~l~l~i~~~--------------~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~ 202 (304)
T cd02661 141 ----CKHVSNTYDPFLDLSLDIKGA--------------DSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHR 202 (304)
T ss_pred ----CCCCcCccccceeeeeecCCC--------------CcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEec
Confidence 999999999999999999864 3678888877653 2555666667888999999
Q ss_pred CCCeeEEEEeeEEecCceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEEeEEEEEeccC-CCCeEEEEEEECC
Q 009986 409 LPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKP-EGGFYRVFVQRKS 487 (521)
Q Consensus 409 lP~~LiihlkRF~~~~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~~-~~GHY~a~vk~~~ 487 (521)
+|++|+|||+||... ...|+.+.|.||. .|||.+|+..+ .....+|+|+|||+|.|+. ++|||++|+|..
T Consensus 203 ~P~iL~i~l~Rf~~~--~~~Ki~~~v~f~~-~L~l~~~~~~~-----~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~- 273 (304)
T cd02661 203 APNVLTIHLKRFSNF--RGGKINKQISFPE-TLDLSPYMSQP-----NDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSS- 273 (304)
T ss_pred CCcEEEEEEeccccC--CccccCCeEecCC-eechhhccccC-----CCCCceeeEEEEEEECCCCCCCcCCEEEEECC-
Confidence 999999999999977 5679999999996 59999998742 2234679999999999965 999999999984
Q ss_pred CCcEEEEeCceeeeeCcccccCCCcEEEEEE
Q 009986 488 EELWYEMQDLHVSETLPQMVALSETYMQIYE 518 (521)
Q Consensus 488 ~~~W~~~nD~~V~~v~~~~v~~~~aYllfYe 518 (521)
+++||.|||..|++++.++|+..+||||||.
T Consensus 274 ~~~W~~~nD~~V~~v~~~~v~~~~aYil~Y~ 304 (304)
T cd02661 274 NGKWYNMDDSKVSPVSIETVLSQKAYILFYI 304 (304)
T ss_pred CCCEEEEeCCeeEECCHHHhcCCCcEEEEeC
Confidence 7899999999999999999999999999993
No 16
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-51 Score=424.64 Aligned_cols=290 Identities=19% Similarity=0.255 Sum_probs=237.1
Q ss_pred hcCCccCCCCchhhHHHHHHhCchhHHHHhcCc--ccccCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhcc
Q 009986 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIP--ENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASK 268 (521)
Q Consensus 191 ~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~--~~~~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s~ 268 (521)
++||.|+|||||||||||+|+++|+|+++++.. ........++.+.|+.||..|+.... ..+.|..+. .+.....
T Consensus 2 ~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~lf~~~~~~~~--~~~~~~~~~-~~~~~~~ 78 (334)
T cd02659 2 YVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLSES--PVKTTELTD-KTRSFGW 78 (334)
T ss_pred CCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcccCcccccHHHHHHHHHHHHHhCCc--cccCcchhh-eeccCCC
Confidence 579999999999999999999999999999963 11123356799999999999987652 345554443 2222224
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHHHhhccCCCCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCceeee
Q 009986 269 KRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETS 348 (521)
Q Consensus 269 ~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s~~ 348 (521)
..|..+.||||+|||.+||+.|+.++.... ..+++.++|.|.+...++|.. |+..+..
T Consensus 79 ~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~-~~~~i~~lF~g~~~~~~~C~~---------------------C~~~s~~ 136 (334)
T cd02659 79 DSLNTFEQHDVQEFFRVLFDKLEEKLKGTG-QEGLIKNLFGGKLVNYIICKE---------------------CPHESER 136 (334)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHHhccCc-ccchhhhhCceEEEeEEEecC---------------------CCceecc
Confidence 568899999999999999999999887533 346899999999999999999 9999999
Q ss_pred eecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcccc---------eeeccceeeeEEEEEEecCCCeeEEEEee
Q 009986 349 RMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET---------VTEVVRPHVARMRYRVTRLPKYMILHMRR 419 (521)
Q Consensus 349 ~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~---------~~~c~~~~~a~k~~~i~~lP~~LiihlkR 419 (521)
.++|+.|+|++|+. .+|+++|+.|...+ |..|.....+.++.+|.++|++|+|||+|
T Consensus 137 ~e~f~~l~l~i~~~--------------~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~R 202 (334)
T cd02659 137 EEYFLDLQVAVKGK--------------KNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKR 202 (334)
T ss_pred cccceEEEEEcCCC--------------CCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeee
Confidence 99999999999853 46788888877543 44566666788899999999999999999
Q ss_pred EEec--CceeeeCCeeEeecCCccccccCCCCCCCC------CCCCCCceEEEeEEEEEeccCCCCeEEEEEEECCCCcE
Q 009986 420 FTKN--NFFVEKNPTLVNFPVKNLELKDYIPLPTPK------ENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELW 491 (521)
Q Consensus 420 F~~~--~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~------~~~~~~~~Y~L~avI~H~G~~~~GHY~a~vk~~~~~~W 491 (521)
|.++ .+...|+.+.|.||. .|||.+|+...... .......+|+|+|||+|.|+.++|||++|+|...+++|
T Consensus 203 f~~~~~~~~~~K~~~~v~fp~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~vk~~~~~~W 281 (334)
T cd02659 203 FEFDFETMMRIKINDRFEFPL-ELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKW 281 (334)
T ss_pred eEEccccCcceeCCceEeCCc-eecCccccccccccccccccccCCCCeeEEEEEEEEecCCCCCCCeEEEEECCCCCce
Confidence 9975 345789999999996 59999998743211 12334577999999999999999999999999667999
Q ss_pred EEEeCceeeeeCccccc----------------------CCCcEEEEEEEe
Q 009986 492 YEMQDLHVSETLPQMVA----------------------LSETYMQIYEQQ 520 (521)
Q Consensus 492 ~~~nD~~V~~v~~~~v~----------------------~~~aYllfYeR~ 520 (521)
|.|||..|++++.++|. ...||||||+|+
T Consensus 282 ~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~ 332 (334)
T cd02659 282 YKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERK 332 (334)
T ss_pred EEEeCcccEECCHHHHHHHcCCCccccccccccccccccccceEEEEEEEe
Confidence 99999999999988884 245999999986
No 17
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-52 Score=437.03 Aligned_cols=381 Identities=23% Similarity=0.321 Sum_probs=267.0
Q ss_pred CceEEecccCcccccC-CCCCCccccccc---CCccEEEEeCCCceEecCCCCccc--CC--Chhhhh------------
Q 009986 131 LNVYACLVCGKYYQGR-GQKSHAYTHSLE---AGHHVYINLRTEKVYCLPDGYEIN--DP--SLEDIR------------ 190 (521)
Q Consensus 131 ~nl~~CL~CG~~~~G~-~~~~ha~~H~~~---~~H~v~v~l~t~~vyc~~~~~~v~--d~--~l~di~------------ 190 (521)
..+|+||.||.++||+ +...||+.|++. +.|+|+||+.|..+|||+|+..+. +. .+.++.
T Consensus 91 ~~iWLCLkCG~q~CG~~~~~~halkH~~~~r~~~Hclvin~~n~~~WCy~Cd~kl~~~~~kn~l~e~vd~l~k~a~~~~~ 170 (877)
T KOG1873|consen 91 NAIWLCLKCGYQGCGRNSESQHALKHFLTPRSEPHCLVINLINWLIWCYSCDAKLVPFDKKNLLGEKVDLLIKVASKTSL 170 (877)
T ss_pred cceeeecccCCeeeCCCcccchhhhhhcccCCCCeeEEEEeeeeeeEEEeccchhccccchhHHHHHHHHHHHHHhcccc
Confidence 4699999999999999 788999999985 579999999999999999997332 11 111110
Q ss_pred ----------------------------------hcCCccCCCCchhhHHHHHHhCchhHHHHhcCcccc----------
Q 009986 191 ----------------------------------HVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY---------- 226 (521)
Q Consensus 191 ----------------------------------~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~---------- 226 (521)
..||.|+|||||+|||||.|+.+|.||+.|......
T Consensus 171 ~~spn~~~~s~~~ek~e~~ski~~ggie~~~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~ 250 (877)
T KOG1873|consen 171 TRSPNTLKISSEEEKLEKGSKIKKGGIEKRRGYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPL 250 (877)
T ss_pred ccCCCcccchhhHHhhhhcccccccCccccccccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCcc
Confidence 119999999999999999999999999999743210
Q ss_pred ----------cCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhcccCCCCCCcCCHHHHHHHHHHHHHHhhcc
Q 009986 227 ----------RHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRN 296 (521)
Q Consensus 227 ----------~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~ 296 (521)
.....++..+|+. +..|... .++.++|..|...+... +|+|+++.||||||+|++||+.|..+-..
T Consensus 251 ~s~l~~L~~el~~~g~lt~al~~-~~e~~e~--~ksv~~Pr~lF~~~C~k-~pqF~g~~QhDsHELLR~LLD~l~~EE~~ 326 (877)
T KOG1873|consen 251 DSSLSPLFSELSSPGPLTYALAN-LLEMSET--TKSVITPRTLFGQFCSK-APQFRGYDQHDSHELLRCLLDSLRSEESR 326 (877)
T ss_pred ccchhhHHHhccCCcchhHHHHh-hhhhhhc--cCCccCHHHHHHHHHHh-CCcccccccccHHHHHHHHHHhhhHHHHH
Confidence 0123456666665 3344333 36899999999999998 89999999999999999999999876321
Q ss_pred C-C-------------------------------CCCCccccccCcEEEEEEEecCCCCCCCCC-CcC-----------C
Q 009986 297 T-K-------------------------------KNTSIIYECFQGELEVVKEIPKNTISGNDQ-NTE-----------K 332 (521)
Q Consensus 297 ~-~-------------------------------~~~sii~~~F~g~l~~~~~c~~~~~~~~~~-~~~-----------~ 332 (521)
. + ..+..+...|.|.+.+.+.|..+.+.-+-. +-+ +
T Consensus 327 ~~kk~Il~~fG~~t~~l~scle~~q~sKvYe~f~~~~~~vp~~~~~~~~s~~~~~~~~vss~~~s~~~~t~pv~~~~~~~ 406 (877)
T KOG1873|consen 327 RRKKNILSNFGGETSSLVSCLECGQKSKVYEPFKDLSLPVPLSFNGPLTSQIECQACDVSSVHESFLSETLPVLPSQSLS 406 (877)
T ss_pred HHHHhHHHhhCccccchhhhhhccchhhcccccccCCcccccccCCCcccchhhhccceeccchhhcccccccccCcccc
Confidence 0 0 023345578888888888888877653311 000 0
Q ss_pred --------------CCC----CCC----------------C---------------------------------------
Q 009986 333 --------------GSD----GGD----------------D--------------------------------------- 339 (521)
Q Consensus 333 --------------~~~----~~~----------------~--------------------------------------- 339 (521)
.++ ++. +
T Consensus 407 qs~~~s~~~~~tsd~sd~spst~~~t~n~~~~e~~~~~t~dn~~~~k~qS~~~~~~S~~~~~~~k~~a~s~n~n~~~~g~ 486 (877)
T KOG1873|consen 407 QSSDSSQHLHLTSDSSDTSPSTEAPTKNLPSSELLDSLTDDNDQVFKGQSDVAGTNSKEDQNKAKNQAKSQNLNEASQGK 486 (877)
T ss_pred ccCCCcccceeccccccCCccccCcccCcccccccccccccCchhhccccccccCccccccchhhhhhhhhccccccccc
Confidence 000 000 0
Q ss_pred --------------------C-----CCCceeeeeecceeeecCCCCCCc------------------------------
Q 009986 340 --------------------H-----DNITTETSRMPFLMLGLDLPPPPL------------------------------ 364 (521)
Q Consensus 340 --------------------~-----~C~~~s~~~~~f~~LsL~lp~~~~------------------------------ 364 (521)
+ +|..-+....+| +.+++. +.
T Consensus 487 ~~~~a~~v~~~~~~~~p~gD~e~s~Ad~~lde~n~~~~---sss~~~-~~~~~~~~s~v~~~s~~ed~n~~~~~~~~~~~ 562 (877)
T KOG1873|consen 487 DNEKALQVNDRQLDILPLGDGELSKADMSLDEANMDEF---SSSLEK-GIFRGRSTSEVSQASCNEDCNDPEPIQDGSGE 562 (877)
T ss_pred cchhhhhhchhhccccccCccccccccccccccccccc---ccccCC-cccCCccHHHhhhhhhhcccCCcccccCCCCc
Confidence 0 000000000000 000000 00
Q ss_pred ----------------------------------------------------chhh-hh---------------------
Q 009986 365 ----------------------------------------------------FKDV-ME--------------------- 370 (521)
Q Consensus 365 ----------------------------------------------------~~~~-~~--------------------- 370 (521)
|..+ ++
T Consensus 563 a~~Ss~~~d~~~~~~~v~~S~~s~sp~~se~~~vs~n~~~~g~~g~~~~Sssf~~g~~~g~~~d~d~~~~e~~~~~~T~~ 642 (877)
T KOG1873|consen 563 ASSSSSSVDREHNNHRVARSRFSRSPKKSEVKIVSGNDKTVGDQGETENSSSFNEGDLNGHASDNDEFLIEIPDDKLTRE 642 (877)
T ss_pred ccCCCcccccccccchhhhhhhcCCCcccceeeeccccccccccceeeechhhhccCccccccchHHhhhcCcccCCCcc
Confidence 0000 00
Q ss_pred -----------------------------cccCCCCchhhHhhhhcccc---------eeeccc------e---------
Q 009986 371 -----------------------------KNIIPQVPLFNILKKFDGET---------VTEVVR------P--------- 397 (521)
Q Consensus 371 -----------------------------~~~~p~vsL~~~L~~f~~~~---------~~~c~~------~--------- 397 (521)
......++++.||..|+..+ |..|.. .
T Consensus 643 ~~~~g~~s~~kvs~~~f~a~~S~s~~~~~~~~D~p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~ 722 (877)
T KOG1873|consen 643 LPVFGPPSKAKVSEQGFDAFSSISDPEVLDSSDEPCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDN 722 (877)
T ss_pred ccccCCCccceeccCCccccccccChhhccCCCCCccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCc
Confidence 00112589999999998644 333422 0
Q ss_pred ------------eeeEEEEEEecCCCeeEEEEeeEEecCc-eeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEE
Q 009986 398 ------------HVARMRYRVTRLPKYMILHMRRFTKNNF-FVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDL 464 (521)
Q Consensus 398 ------------~~a~k~~~i~~lP~~LiihlkRF~~~~~-~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L 464 (521)
..|.|+..|..+||||+||||||....+ ...|.+.+|.|+ +.+||.+|+..-.+...++....|+|
T Consensus 723 sk~s~~es~~~~t~akk~~li~~aPpVltihlKrf~q~~~~~~~k~~~h~~f~-E~~dL~~~~~~rc~~l~~~~s~~Yrl 801 (877)
T KOG1873|consen 723 SKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKRFFQDIRGRLSKLNKHVDFK-EFEDLLDYMDFRCSHLDEPSSFVYRL 801 (877)
T ss_pred ccccccchhhhhhhhheeeecccCCceeeehHhhhhhhhhchhhcccccchHH-HHHHHHHHhhhhccccCCcchhhhhh
Confidence 0145677799999999999999987654 388999999999 67999999875444333345567999
Q ss_pred eEEEEEeccCCCCeEEEEEEEC--------------------CCCcEEEEeCceeeeeCcccccCCCcEEEEEEEe
Q 009986 465 IANIVHDGKPEGGFYRVFVQRK--------------------SEELWYEMQDLHVSETLPQMVALSETYMQIYEQQ 520 (521)
Q Consensus 465 ~avI~H~G~~~~GHY~a~vk~~--------------------~~~~W~~~nD~~V~~v~~~~v~~~~aYllfYeR~ 520 (521)
.|+|.|.|++..|||++|++.. ..++||.+.|+.|++|+.+.|+.++||||||||.
T Consensus 802 ~gvvehsgtm~~ghyvayv~~~t~~~~~~~~~~~~~~sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 802 AGVVEHSGTMSYGHYVAYVRGGTFLDLSAPSNSKDFESDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred ccceeccccccCCcchhhhhccchhhccCccccccchhccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 9999999999999999999852 2478999999999999999999999999999995
No 18
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-49 Score=420.90 Aligned_cols=358 Identities=26% Similarity=0.396 Sum_probs=300.3
Q ss_pred CceEE-ecccCcccccCCCCCCcccccccCCccEEEEeCCCceEecCCCCcccCCChhhhh-------------------
Q 009986 131 LNVYA-CLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDIR------------------- 190 (521)
Q Consensus 131 ~nl~~-CL~CG~~~~G~~~~~ha~~H~~~~~H~v~v~l~t~~vyc~~~~~~v~d~~l~di~------------------- 190 (521)
.-+++ |+.|+ ++|+..++|-..|+...+|-+.+.+.++-.||++|.+.|++..+..+.
T Consensus 54 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (492)
T KOG1867|consen 54 IRLAVPCLICD--SLGCLSNSHKLEHSGNKKHNNTIDVNNGLLYCFACPDFIYDAELLKLADIKKYKEQPFHQLDSTLLT 131 (492)
T ss_pred hhhcccceech--hcccccccccccccccccccccceeehhhheeccCCcEeeccchhhHHHHHhhhccchhhccchhhh
Confidence 34555 78888 778888999999999999999999999999999999999764322111
Q ss_pred -----------------------------hcCCccCCCCchhhHHHHHHhCchhHHHHhcCcccc---cCC-CChHHHHH
Q 009986 191 -----------------------------HVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY---RHC-KSPLVHRF 237 (521)
Q Consensus 191 -----------------------------~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~---~~~-~~~l~~~l 237 (521)
..||+|+|+||+||+|||+|.|.+..++.++...+- ... ..++.+++
T Consensus 132 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~ 211 (492)
T KOG1867|consen 132 HLAEATVCQQTLLKENPKDRLVLSTTALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDL 211 (492)
T ss_pred hhhhhhccchhcccCCcccccccceeeecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhh
Confidence 019999999999999999999999999988854332 122 45899999
Q ss_pred HHHHHHHHccCCCCCcCChHHHHHHHHHhcccCCCCCCcCCHHHHHHHHHHHHHHhhccCC----------CCCCccccc
Q 009986 238 GDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK----------KNTSIIYEC 307 (521)
Q Consensus 238 ~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~----------~~~sii~~~ 307 (521)
..+++.+|++.. ...++|..++..+|+. .+.|++++||||+||+..+++.+|.+..... ...++++..
T Consensus 212 ~~~~~~~~s~~~-~~~~sp~~~l~~~~k~-~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~~~~~~~~~c~~iv~~~ 289 (492)
T KOG1867|consen 212 DRLFQALYSGHN-RTPYSPFELLNLVWKH-SPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSLIASQSNKQCPCIVHTI 289 (492)
T ss_pred hhhhhHhhcCCC-CCCcChHHHHHHHHHh-CcccccccccchHHHHHHhcccccccccccccccccccCCccccccccee
Confidence 999999999985 6889999999999998 7999999999999999999999999871111 247899999
Q ss_pred cCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCceeeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhc
Q 009986 308 FQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFD 387 (521)
Q Consensus 308 F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~ 387 (521)
|.|.|...++|.. |+..+.+++|||+|+|+||..-..... ..+..++.+|+..|+
T Consensus 290 F~G~L~~~v~c~~---------------------c~~~S~~~dpf~disL~i~~~~~~~~~----~~~~~~~~~cl~~~~ 344 (492)
T KOG1867|consen 290 FSGTLQSDVTCQT---------------------CGSKSTTYDPFMDISLDIPDQFTSSSV----RSPELTLLDCLDRFT 344 (492)
T ss_pred ecceeccceeehh---------------------hcceeeeccCccceeeecchhccCccc----ccchhhhhhhhhhhh
Confidence 9999999999999 999999999999999999964221111 111356788887776
Q ss_pred cc---------ceeeccceeeeEEEEEEecCCCeeEEEEeeEEecCceee-eCCeeEeecCCccccccCCCCCCCCCCCC
Q 009986 388 GE---------TVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVE-KNPTLVNFPVKNLELKDYIPLPTPKENEK 457 (521)
Q Consensus 388 ~~---------~~~~c~~~~~a~k~~~i~~lP~~LiihlkRF~~~~~~~~-K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~ 457 (521)
.. .|..|...+.++|+..|.++|.+|++|++||++...... |+...|.||. .|+|.+|+..+..+..+.
T Consensus 345 ~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp~-~l~m~p~~~~~~~~~~~~ 423 (492)
T KOG1867|consen 345 RSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREKIDSYVSFPV-LLNMKPYCSSEKLKSQDN 423 (492)
T ss_pred hhhhcCcccccccCCcccccccccccccccCCceeeeeeccccccccccccccCcccccch-hhcCCccccccccccCCC
Confidence 42 356677778889999999999999999999998765544 9999999996 599999998644444444
Q ss_pred CCceEEEeEEEEEeccCCCCeEEEEEEECCCCcEEEEeCceeeeeCcccccCCCcEEEEEEEe
Q 009986 458 LRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQ 520 (521)
Q Consensus 458 ~~~~Y~L~avI~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYllfYeR~ 520 (521)
....|+|.|||+|+|++++|||+||.|+ .+.||+|||+.|+.++.++|+..+||+|||.++
T Consensus 424 ~~~~Y~L~AVV~H~G~~~SGHY~aY~r~--~~~~~~~dDs~v~~~s~~eVl~~~aylLFY~~~ 484 (492)
T KOG1867|consen 424 PDHLYELRAVVVHHGTVGSGHYVAYRRQ--SGGWFKCDDSTVTKVSEEEVLSSQAYLLFYTQE 484 (492)
T ss_pred CCceEEEEEEEEeccCCCCCceEEEEEe--CCCcEEEcCeEEEEeeHHHhhhchhhheehhHH
Confidence 4678999999999999999999999999 889999999999999999999999999999874
No 19
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.9e-49 Score=385.84 Aligned_cols=214 Identities=26% Similarity=0.358 Sum_probs=187.6
Q ss_pred CCccCCCCchhhHHHHHHhCchhHHHHhcCcccccCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhcccCCC
Q 009986 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFR 272 (521)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s~~~F~ 272 (521)
||+|+||||||||+||+|+|+|+||++++...
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 99999999999999999999999999988311
Q ss_pred CCCcCCHHHHHHHHHHHHHHhhccCCCCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCceee-eeec
Q 009986 273 IGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTET-SRMP 351 (521)
Q Consensus 273 ~~~QqDA~EFl~~LLn~L~~~l~~~~~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s~-~~~~ 351 (521)
.||||+|||.+||+.|+. .+.++|.|++...++|.. |+..+. +.++
T Consensus 33 --~QqDa~EFl~~ll~~l~~----------~i~~~F~g~~~~~i~C~~---------------------C~~~s~~~~e~ 79 (240)
T cd02662 33 --EQQDAHELFQVLLETLEQ----------LLKFPFDGLLASRIVCLQ---------------------CGESSKVRYES 79 (240)
T ss_pred --hhcCHHHHHHHHHHHHHH----------hccCccccEEEEEEEeCC---------------------CCCccCcceee
Confidence 899999999999999993 478899999999999999 988765 4899
Q ss_pred ceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhccccee---eccceeeeEEEEEEecCCCeeEEEEeeEEecC-cee
Q 009986 352 FLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVT---EVVRPHVARMRYRVTRLPKYMILHMRRFTKNN-FFV 427 (521)
Q Consensus 352 f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~~~---~c~~~~~a~k~~~i~~lP~~LiihlkRF~~~~-~~~ 427 (521)
|++|+|+||..+. .+..+|++||+.|...+.. .|..+ +.+|.++|+||+|||+||.++. +..
T Consensus 80 f~~LsL~ip~~~~---------~~~~sl~~~L~~~~~~E~l~~~~C~~C-----~~~i~~lP~vLii~LkRF~~~~~~~~ 145 (240)
T cd02662 80 FTMLSLPVPNQSS---------GSGTTLEHCLDDFLSTEIIDDYKCDRC-----QTVIVRLPQILCIHLSRSVFDGRGTS 145 (240)
T ss_pred eeeeEecccccCC---------CCCCCHHHHHHHhcCcccccCcCCCCC-----eEEeecCCcEEEEEEEEEEEcCCCce
Confidence 9999999997532 2357999999999876532 34444 6789999999999999999887 788
Q ss_pred eeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEEeEEEEEeccCCCCeEEEEEEEC--------------------C
Q 009986 428 EKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRK--------------------S 487 (521)
Q Consensus 428 ~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~a~vk~~--------------------~ 487 (521)
.|+++.|.||.. | ....|+|+|||+|.|+.++|||++|+|.+ .
T Consensus 146 ~K~~~~v~fp~~-l----------------~~~~Y~L~avi~H~G~~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 208 (240)
T cd02662 146 TKNSCKVSFPER-L----------------PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSST 208 (240)
T ss_pred eeeccEEECCCc-c----------------CCceEEEEEEEEEeccCCCceEEEEEeCCCcccccccccccccccccCcc
Confidence 999999999964 5 13569999999999988999999999996 3
Q ss_pred CCcEEEEeCceeeeeCcccc-cCCCcEEEEEE
Q 009986 488 EELWYEMQDLHVSETLPQMV-ALSETYMQIYE 518 (521)
Q Consensus 488 ~~~W~~~nD~~V~~v~~~~v-~~~~aYllfYe 518 (521)
.++||+|||+.|++++.+.| ...+||||||+
T Consensus 209 ~~~W~~fnD~~V~~v~~~~v~~~~~aY~LfYe 240 (240)
T cd02662 209 SHPWWRISDTTVKEVSESEVLEQKSAYMLFYE 240 (240)
T ss_pred CCCEEEEechheEEeCHHHHhhCCCEEEEEeC
Confidence 48999999999999999999 89999999996
No 20
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-48 Score=374.42 Aligned_cols=295 Identities=22% Similarity=0.292 Sum_probs=230.8
Q ss_pred CCChhhhhhcCCccCCCCchhhHHHHHHhCchhHHHHhcC-----c---ccccCCCC-hHHHHHHHHHHHHHccCCCCCc
Q 009986 183 DPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLI-----P---ENYRHCKS-PLVHRFGDLTRKIWHARNFKGQ 253 (521)
Q Consensus 183 d~~l~di~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~-----~---~~~~~~~~-~l~~~l~~L~~~l~s~~~~~~~ 253 (521)
...++-...+||.|+|||||||++||||+.+..|...|+. . +...+..+ .+...|..|...+-.... ..
T Consensus 63 s~~~dn~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~--~s 140 (415)
T COG5533 63 SKRKDNLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGP--KS 140 (415)
T ss_pred hhhhcccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCC--cc
Confidence 3445556678999999999999999999999999884432 1 11222333 456666666665554443 35
Q ss_pred CChHHHHHHHHHhcccCCCCCCcCCHHHHHHHHHHHHHHhhccCCC----------------------------------
Q 009986 254 VSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKK---------------------------------- 299 (521)
Q Consensus 254 vsP~~ll~~i~~~s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~~---------------------------------- 299 (521)
|+|..|+..++.. ++.|++.-|||++||+.+|||.||+++++.+.
T Consensus 141 is~~nF~~i~~~~-n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~s 219 (415)
T COG5533 141 ISPRNFIDILSGR-NKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRS 219 (415)
T ss_pred cchHHHHHHHccc-cccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhcc
Confidence 9999999999998 89999999999999999999999999975431
Q ss_pred CCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCceeeeeecceeeecCCCCCCcchhhhhcccCCCCch
Q 009986 300 NTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPL 379 (521)
Q Consensus 300 ~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL 379 (521)
..++|.+.|.|+..++++|.. |+..++++.+|..|.+++|... ++.|
T Consensus 220 n~S~v~~~f~gq~~srlqC~~---------------------C~~TStT~a~fs~l~vp~~~v~------------~~~l 266 (415)
T COG5533 220 NKSLVAKTFFGQDKSRLQCEA---------------------CNYTSTTIAMFSTLLVPPYEVV------------QLGL 266 (415)
T ss_pred chHHHHHHHhhhhhhhhhhhh---------------------cCCceeEEeccceeeeccchhe------------eecH
Confidence 457899999999999999999 9999999999999999988642 5779
Q ss_pred hhHhhhhcccc---------eeeccceeeeEEEEEEecCCCeeEEEEeeEEecCceeeeCCeeE----eecCCccccccC
Q 009986 380 FNILKKFDGET---------VTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLV----NFPVKNLELKDY 446 (521)
Q Consensus 380 ~~~L~~f~~~~---------~~~c~~~~~a~k~~~i~~lP~~LiihlkRF~~~~~~~~K~~~~V----~FP~~~Ldl~~~ 446 (521)
++|+.+|..++ |+.|..++.++|++.|.+||++|||||+||.-.-+...|+++.- +||.+ ....+.
T Consensus 267 ~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e-~~v~~~ 345 (415)
T COG5533 267 QECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVE-VNVTLL 345 (415)
T ss_pred HHHHHHhhhHHhhcCcccccCchhcccccchheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCCce-eccccc
Confidence 99999997643 77788888999999999999999999999985545555555543 22221 111111
Q ss_pred CCCCCCCCCCCCCceEEEeEEEEEeccCCCCeEEEEEEECCCCcEEEEeCceeeeeCccc-ccCCCcEEEEEEEe
Q 009986 447 IPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQM-VALSETYMQIYEQQ 520 (521)
Q Consensus 447 ~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~-v~~~~aYllfYeR~ 520 (521)
+. ..+.-.+.+|+|+|||||.|+.++|||+++|+. ++.|+.|||+.|+.++... .....+|||||+|.
T Consensus 346 f~----~~~~~~P~~Y~L~gv~Ch~G~L~gGHY~s~v~~--~~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 346 FN----NGIGYIPRKYSLLGVVCHNGTLNGGHYFSEVKR--SGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred cc----CCCCCCccceeEEEEEeecceecCceeEEeeee--cCceEEechhheeeccceecccCCcceEEEEEec
Confidence 11 112234567999999999999999999999999 7999999999999987644 33457999999985
No 21
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=1.8e-45 Score=363.48 Aligned_cols=246 Identities=27% Similarity=0.514 Sum_probs=204.5
Q ss_pred hcCCccCCCCchhhHHHHHHhCchhHHHHhcCcc--------cccCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHH
Q 009986 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPE--------NYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQA 262 (521)
Q Consensus 191 ~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~--------~~~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~ 262 (521)
++||.|+||||||||+||+|+++|+|+++++... .......++.++|..|+..||........+.|..|+.+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 4699999999999999999999999999999641 11123457999999999999998444689999999999
Q ss_pred HHHhcccCCCCCCcCCHHHHHHHHHHHHHHhhccCC----------CCCCccccccCcEEEEEEEecCCCCCCCCCCcCC
Q 009986 263 VMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK----------KNTSIIYECFQGELEVVKEIPKNTISGNDQNTEK 332 (521)
Q Consensus 263 i~~~s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~----------~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~ 332 (521)
++.. .+.|..+.||||+|||.+||+.|+.++.... ...+++.++|.+.+...+.|..
T Consensus 81 l~~~-~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~------------ 147 (269)
T PF00443_consen 81 LSSI-NPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSS------------ 147 (269)
T ss_dssp HHHH-CGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETT------------
T ss_pred cccc-ccccccccccchhhhhcccccccchhhcccccccccccccccccccccccccccccccccccc------------
Confidence 9998 5779999999999999999999999977632 3567889999999999999999
Q ss_pred CCCCCCCCCCCceeeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcccceeeccceeeeEEEEEEecCCCe
Q 009986 333 GSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKY 412 (521)
Q Consensus 333 ~~~~~~~~~C~~~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~~~~c~~~~~a~k~~~i~~lP~~ 412 (521)
|+.. +.+|.++|+|
T Consensus 148 ---------c~~~---------------------------------------------------------~~~~~~~P~~ 161 (269)
T PF00443_consen 148 ---------CKNS---------------------------------------------------------QSSISSLPPI 161 (269)
T ss_dssp ---------TTCE---------------------------------------------------------EEEEEEBBSE
T ss_pred ---------cccc---------------------------------------------------------ccccccccce
Confidence 7654 5668999999
Q ss_pred eEEEEeeEEec--CceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEEeEEEEEeccCCCCeEEEEEEECCCCc
Q 009986 413 MILHMRRFTKN--NFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEEL 490 (521)
Q Consensus 413 LiihlkRF~~~--~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~a~vk~~~~~~ 490 (521)
|+|+|+||.++ .....|+...|.||++.|||.+++..+..... ...+|+|+|||+|.|+.++|||+||+|+..+++
T Consensus 162 L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~--~~~~Y~L~avi~H~G~~~~GHY~a~v~~~~~~~ 239 (269)
T PF00443_consen 162 LIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQ--SNVKYRLVAVIVHYGSADSGHYVAYVRDSDDGK 239 (269)
T ss_dssp EEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHT--SSSEEEEEEEEEEESSTTSEEEEEEEEETTTTE
T ss_pred eeeccccceeccccccccccccccccCchhhhhhhhhcccccccc--ccceeeehhhhccccccccceEEEeeccccCCe
Confidence 99999999554 45689999999999657999999875432111 246799999999999999999999999976678
Q ss_pred EEEEeCceeeeeCcccccC---CCcEEEEE
Q 009986 491 WYEMQDLHVSETLPQMVAL---SETYMQIY 517 (521)
Q Consensus 491 W~~~nD~~V~~v~~~~v~~---~~aYllfY 517 (521)
|++|||+.|++++.++|.. ..||||||
T Consensus 240 W~~~dD~~v~~~~~~~v~~~~~~~~yll~Y 269 (269)
T PF00443_consen 240 WYKFDDSRVTEVSWEEVIKSSNSTAYLLFY 269 (269)
T ss_dssp EEEEETTEEEEESHHHHCCGGSTCEEEEEE
T ss_pred EEEeeCCceEECCHHHHhhccCCceEEEeC
Confidence 9999999999999999988 99999999
No 22
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.1e-45 Score=358.77 Aligned_cols=221 Identities=32% Similarity=0.501 Sum_probs=196.0
Q ss_pred CCccCCCCchhhHHHHHHhCchhHHHHhcCcccccCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhcccCCC
Q 009986 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFR 272 (521)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s~~~F~ 272 (521)
||.|+||||||||+||+|++
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999999
Q ss_pred CCCcCCHHHHHHHHHHHHHHhhccCCCCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCceeeeeecc
Q 009986 273 IGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPF 352 (521)
Q Consensus 273 ~~~QqDA~EFl~~LLn~L~~~l~~~~~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s~~~~~f 352 (521)
.||||+|||.+||+.|+ +.+.++|+|++..+++|.. |+..+...++|
T Consensus 21 --~QqDa~Ef~~~ll~~l~----------~~i~~~F~~~~~~~~~C~~---------------------C~~~~~~~e~~ 67 (230)
T cd02674 21 --DQQDAQEFLLFLLDGLH----------SIIVDLFQGQLKSRLTCLT---------------------CGKTSTTFEPF 67 (230)
T ss_pred --hhhhHHHHHHHHHHHHh----------hhHHheeCCEEeCcEEcCC---------------------CcCCcceecce
Confidence 79999999999999999 3589999999999999999 99999999999
Q ss_pred eeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcccc---------eeeccceeeeEEEEEEecCCCeeEEEEeeEEec
Q 009986 353 LMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET---------VTEVVRPHVARMRYRVTRLPKYMILHMRRFTKN 423 (521)
Q Consensus 353 ~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~---------~~~c~~~~~a~k~~~i~~lP~~LiihlkRF~~~ 423 (521)
+.|+|++|..... .+..+|.++|+.|+..+ |..|...+.+.++.+|.++|++|+|||+||..+
T Consensus 68 ~~l~l~ip~~~~~--------~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~ 139 (230)
T cd02674 68 TYLSLPIPSGSGD--------APKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFS 139 (230)
T ss_pred eEEEEecccccCC--------CCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecC
Confidence 9999999975321 35689999999887643 556677777888999999999999999999998
Q ss_pred CceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEEeEEEEEeccCCCCeEEEEEEECCCCcEEEEeCceeeeeC
Q 009986 424 NFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETL 503 (521)
Q Consensus 424 ~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~ 503 (521)
.+...|+.+.|.||.+.|||.+|+.. .......+|+|+|||+|.|+.++|||+||+|...+++||.|||..|++++
T Consensus 140 ~~~~~K~~~~v~~~~~~l~l~~~~~~----~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~ 215 (230)
T cd02674 140 RGSTRKLTTPVTFPLNDLDLTPYVDT----RSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVS 215 (230)
T ss_pred CCCcccCCceEeccccccccccccCc----ccCCCCceEEEEEEEEeeCCCCCcEEEEEEECCCCCceEEEcCCeEEEcC
Confidence 88889999999999777999998632 12233567999999999998899999999999756999999999999999
Q ss_pred cccccCCCcEEEEEE
Q 009986 504 PQMVALSETYMQIYE 518 (521)
Q Consensus 504 ~~~v~~~~aYllfYe 518 (521)
.+++...+||||||+
T Consensus 216 ~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 216 ESSVVSSSAYILFYE 230 (230)
T ss_pred HHHccCCCceEEEeC
Confidence 999989999999996
No 23
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-45 Score=396.05 Aligned_cols=300 Identities=26% Similarity=0.401 Sum_probs=250.3
Q ss_pred ChhhhhhcCCccCCCCchhhHHHHHHhCchhHHHHhcCccc-------ccCCCChHHHHHHHHHHHHHccCCCCCcCChH
Q 009986 185 SLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPEN-------YRHCKSPLVHRFGDLTRKIWHARNFKGQVSPH 257 (521)
Q Consensus 185 ~l~di~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~-------~~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~ 257 (521)
..+--..+||.|+|||||||++||||+.++.||+.||.... ......++..++..++.++|.... ...+.|.
T Consensus 295 ~~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~-~~s~~P~ 373 (653)
T KOG1868|consen 295 STDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHG-QFSVLPR 373 (653)
T ss_pred cccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCC-ceecCcH
Confidence 33444557999999999999999999999999988875321 112345788899999999998854 3468999
Q ss_pred HHHHHHHHhcccCCCCCCcCCHHHHHHHHHHHHHHhhccCCC----------------------------------CCCc
Q 009986 258 EFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKK----------------------------------NTSI 303 (521)
Q Consensus 258 ~ll~~i~~~s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~~----------------------------------~~si 303 (521)
.|+..+... .+.|.++.|||++||+.++++.||+++....+ ..+.
T Consensus 374 ~f~~~~~~y-~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~ 452 (653)
T KOG1868|consen 374 RFIRVLKRY-SPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSK 452 (653)
T ss_pred HHHHHHhhc-ccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchH
Confidence 999999998 79999999999999999999999999875310 2334
Q ss_pred cccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCceeeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHh
Q 009986 304 IYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNIL 383 (521)
Q Consensus 304 i~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L 383 (521)
|.++|+|+++..++|.. |+..++++++|+.|+|+||...... ..++|.+|+
T Consensus 453 i~~lf~gQ~ks~Lkc~~---------------------cg~~s~t~~~f~~lslpIp~~~~~~--------~~~~L~~C~ 503 (653)
T KOG1868|consen 453 IGDLFVGQLKSYLKCQA---------------------CGYTSTTFETFTDLSLPIPKKGFAG--------GKVSLEDCL 503 (653)
T ss_pred HHHHHHHHHHhheehhh---------------------cCCcceeeecceeeEEecccccccc--------cccchHhhh
Confidence 78899999999999999 9999999999999999999754321 157899999
Q ss_pred hhhcccc---------eeeccceeeeE--EEEEEecCCCeeEEEEeeEEecCceeeeCCeeEeecCCccccccCCCCCCC
Q 009986 384 KKFDGET---------VTEVVRPHVAR--MRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTP 452 (521)
Q Consensus 384 ~~f~~~~---------~~~c~~~~~a~--k~~~i~~lP~~LiihlkRF~~~~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~ 452 (521)
..|++.+ |..|....... |+..|.+||++|++||+||........|+.+-|+||+..+++.++....
T Consensus 504 ~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~-- 581 (653)
T KOG1868|consen 504 SLFTKEEKLEGDEAWLCPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEK-- 581 (653)
T ss_pred ccccchhhcccccccCCccccCcccccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhcccc--
Confidence 9998744 55565555554 8999999999999999999987656789999999998888888866522
Q ss_pred CCCCCCCceEEEeEEEEEeccCCCCeEEEEEEECCCCcEEEEeCceeeeeCcccccCCCcEEEEEEEe
Q 009986 453 KENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQ 520 (521)
Q Consensus 453 ~~~~~~~~~Y~L~avI~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYllfYeR~ 520 (521)
......|+|+|||+|.|++++|||+||++....++|+.|||+.|+.+....+..+.||||||+|.
T Consensus 582 ---~~~~~~Y~L~aVv~H~Gtl~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~ 646 (653)
T KOG1868|consen 582 ---GNNPKSYRLYAVVNHSGTLNSGHYTAYVYKNEKQRWFTFDDSEVSPISETDVGSSSAYILFYERL 646 (653)
T ss_pred ---CCCccceeeEEEEeccCcccCCceEEEEeecCCCceEEecCeeeeccccccccCCCceEEEeecC
Confidence 12234599999999999999999999999877899999999999999998888899999999985
No 24
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.6e-44 Score=368.18 Aligned_cols=276 Identities=19% Similarity=0.285 Sum_probs=213.7
Q ss_pred hcCCccCCCCchhhHHHHHHhCchhHHHHhcCcccccC--------------C---------CChHHHHHHHHHHHHHcc
Q 009986 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRH--------------C---------KSPLVHRFGDLTRKIWHA 247 (521)
Q Consensus 191 ~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~--------------~---------~~~l~~~l~~L~~~l~s~ 247 (521)
++||.|+||||||||+||+|+++|+||++++....... . ..+++.+|+.||..|+..
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 36999999999999999999999999999996431100 0 115899999999999987
Q ss_pred CCCCCcCChHHHHHHHHHhcccCCCCCCcCCHHHHHHHHHHHHHHhhccCCC------------CCCccccccCcEEEEE
Q 009986 248 RNFKGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKK------------NTSIIYECFQGELEVV 315 (521)
Q Consensus 248 ~~~~~~vsP~~ll~~i~~~s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~~------------~~sii~~~F~g~l~~~ 315 (521)
. +..|+|..++..++. .||||+||+..||+.|+.+++.... ..++|.++|.|++...
T Consensus 81 ~--~~~v~P~~~l~~l~~---------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~ 149 (343)
T cd02666 81 N--TRSVTPSKELAYLAL---------RQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQ 149 (343)
T ss_pred C--CCccCcHHHHHhccc---------cccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEEEE
Confidence 6 478999999876542 7999999999999999999875431 3568999999999999
Q ss_pred EEecCCCCCCCCCCcCCCCCCCCCCCCC---ceeeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhccccee
Q 009986 316 KEIPKNTISGNDQNTEKGSDGGDDHDNI---TTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVT 392 (521)
Q Consensus 316 ~~c~~~~~~~~~~~~~~~~~~~~~~~C~---~~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~~~ 392 (521)
++|.. |. ..+.+.++|+.|+|+|+.... .. .-.....+|.++|+.|+..+.
T Consensus 150 i~c~~---------------------~~~~~~~s~~~E~F~~L~l~I~~~~~--~~--~~~~~~~~L~d~L~~~~~~e~- 203 (343)
T cd02666 150 LVPES---------------------MGNQPSVRTKTERFLSLLVDVGKKGR--EI--VVLLEPKDLYDALDRYFDYDS- 203 (343)
T ss_pred EEecc---------------------cCCCCCCccccceeEEEEEecCcccc--cc--cccCCCCCHHHHHHHhcChhh-
Confidence 99887 64 678899999999999985321 00 000123689999999987664
Q ss_pred eccceeeeEEEEEEecCCCeeEEEEeeEEecCceeeeCCeeEeecCCccccccCCCCCCCCC------------------
Q 009986 393 EVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKE------------------ 454 (521)
Q Consensus 393 ~c~~~~~a~k~~~i~~lP~~LiihlkRF~~~~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~------------------ 454 (521)
|.+||++|.|||| +.+..+...+...+..||. ..|..+++.......
T Consensus 204 -------------~~~~P~vl~~qlq-~~~~~~~~~~~~dry~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 268 (343)
T cd02666 204 -------------LTKLPQRSQVQAQ-LAQPLQRELISMDRYELPS-SIDDIDELIREAIQSESSLVRQAQNELAELKHE 268 (343)
T ss_pred -------------hccCCHHHHHHHh-hcccccchheeeccccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 4444444445555556663 344444432100000
Q ss_pred -----CCCCCceEEEeEEEEEeccCCCCeEEEEEEECCCCcEEEEeCceeeeeCcccccC------CCcEEEEEE
Q 009986 455 -----NEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVAL------SETYMQIYE 518 (521)
Q Consensus 455 -----~~~~~~~Y~L~avI~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~------~~aYllfYe 518 (521)
.+.....|+|+|||+|.|+.++|||++|+|+..++.||+|||..|+++..++|+. ..+|||||.
T Consensus 269 ~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 269 IEKQFDDLKSYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred HHHhhcccCCCceEEEEEEEeecCCCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEeC
Confidence 1124567999999999999999999999999877999999999999999988875 589999993
No 25
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.3e-43 Score=337.12 Aligned_cols=210 Identities=23% Similarity=0.301 Sum_probs=177.4
Q ss_pred CCccCCCCchhhHHHHHHhCchhHHHHhcCcccccCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhcccCCC
Q 009986 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFR 272 (521)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s~~~F~ 272 (521)
||.|.|||||+|+|.|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 20 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS------------------------------------------------------------ 20 (228)
T ss_pred CccccCcchhHHHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999987
Q ss_pred CCCcCCHHHHHHHHHHHHHHhhccCC-------CCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCce
Q 009986 273 IGVQSNPVEFMSWLLNTLHSDLRNTK-------KNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITT 345 (521)
Q Consensus 273 ~~~QqDA~EFl~~LLn~L~~~l~~~~-------~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~ 345 (521)
.||||+||+..||+.|+..++... +..++|.++|+|++..++.|.. ..
T Consensus 21 --~QQDa~Ef~~~Lld~Le~~l~~~~~~~~~~~~~~~~i~~lF~G~~~~~~~~~~-----------------------~~ 75 (228)
T cd02665 21 --QQQDVSEFTHLLLDWLEDAFQAAAEAISPGEKSKNPMVQLFYGTFLTEGVLEG-----------------------KP 75 (228)
T ss_pred --HHHHHHHHHHHHHHHHHHHhccccccccccccccchHhhceEEEEEEEEEECC-----------------------Cc
Confidence 699999999999999999987432 3456899999999998776644 56
Q ss_pred eeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhccccee---eccceeeeEEEEEEecCCCeeEEEEeeEEe
Q 009986 346 ETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVT---EVVRPHVARMRYRVTRLPKYMILHMRRFTK 422 (521)
Q Consensus 346 s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~~~---~c~~~~~a~k~~~i~~lP~~LiihlkRF~~ 422 (521)
+.+.++|+.|+|+|... .+|++||+.|..++.. .|.....+.++.+|.+||+||+|||+||.+
T Consensus 76 s~~~E~F~~L~l~i~~~--------------~~L~e~L~~~~~ee~l~~~~~~~~~~~~~~~~i~~lP~vL~i~LkRF~~ 141 (228)
T cd02665 76 FCNCETFGQYPLQVNGY--------------GNLHECLEAAMFEGEVELLPSDHSVKSGQERWFTELPPVLTFELSRFEF 141 (228)
T ss_pred ccccCccEEEEEEECCC--------------CCHHHHHHHhhhhcccccccccchhhhhhhhhhhhCChhhEEEeEeeEE
Confidence 78899999999998653 4789999988755322 222334456777899999999999999999
Q ss_pred cCceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEEeEEEEEeccCCCCeEEEEEEECCCCcEEEEeCceeeee
Q 009986 423 NNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSET 502 (521)
Q Consensus 423 ~~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v 502 (521)
+.....|+++.|.||++ | ....|+|+|||+|.|++++|||++|+|+..+++||+|||+.|+++
T Consensus 142 ~~~~~~Ki~~~v~FP~~-l----------------~~~~Y~L~aVi~H~G~~~~GHY~~~i~~~~~~~W~~fdD~~V~~~ 204 (228)
T cd02665 142 NQGRPEKIHDKLEFPQI-I----------------QQVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTES 204 (228)
T ss_pred cCCccEECCEEEEeeCc-c----------------CCceeEEEEEEEecCCCCCCEEEEEEEcCCCCEEEEEECCeeEEc
Confidence 87778999999999964 4 124699999999999999999999999877899999999999999
Q ss_pred CcccccC--------CCcEEEEEE
Q 009986 503 LPQMVAL--------SETYMQIYE 518 (521)
Q Consensus 503 ~~~~v~~--------~~aYllfYe 518 (521)
+.+.|.. ..||||||.
T Consensus 205 ~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 205 SWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred CHHHHhhhccCCCCCCceEEEEEC
Confidence 9988863 479999994
No 26
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.6e-41 Score=331.50 Aligned_cols=225 Identities=18% Similarity=0.210 Sum_probs=179.7
Q ss_pred CccCCCCchhhHHHHHHhCchhHHHHhcCcccccCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhcccCCCC
Q 009986 194 LNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRI 273 (521)
Q Consensus 194 L~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s~~~F~~ 273 (521)
|.|.||+||+|+.+|+|.++ ++. ++.|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i--------------------------------------------------~~~-~~~F~~ 30 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSSI--------------------------------------------------GKI-NTEFDN 30 (245)
T ss_pred ceecCCeeeehhHHHHHHHH--------------------------------------------------hhh-hhhcCC
Confidence 78999999999999998742 122 578999
Q ss_pred CCcCCHHHHHHHHHHHHHHhhccCC---------CCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCc
Q 009986 274 GVQSNPVEFMSWLLNTLHSDLRNTK---------KNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNIT 344 (521)
Q Consensus 274 ~~QqDA~EFl~~LLn~L~~~l~~~~---------~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~ 344 (521)
++||||||||++||+.|++++.... .....+.++|+|++++.++|.. |+.
T Consensus 31 ~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~~---------------------C~~ 89 (245)
T cd02673 31 DDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIG---------------------CSF 89 (245)
T ss_pred CchhhHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEecC---------------------CCC
Confidence 9999999999999999998764321 0112345789999999999999 999
Q ss_pred eeeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhccc-----ceeeccceeeeEEEEEEecCCCeeEEEEee
Q 009986 345 TETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGE-----TVTEVVRPHVARMRYRVTRLPKYMILHMRR 419 (521)
Q Consensus 345 ~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~-----~~~~c~~~~~a~k~~~i~~lP~~LiihlkR 419 (521)
.+.+.++|++|+|++|... ...|++|++.|... .|..|+.. .+.++.+|.++|++|+|||||
T Consensus 90 ~s~~~e~~~~L~L~i~~~~------------~~~le~l~~~~~~~~~~e~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkR 156 (245)
T cd02673 90 EENVSDVGNFLDVSMIDNK------------LDIDELLISNFKTWSPIEKDCSSCKCE-SAISSERIMTFPECLSINLKR 156 (245)
T ss_pred eeeeccccceeccccccCC------------cchHHHHHHHhhcccccCccCCCCCCc-cceeechhhhCChhhEEeeEe
Confidence 9999999999999998631 23467777766553 36667654 678888999999999999999
Q ss_pred EEecCceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEEeEEEEEec-cCCCCeEEEEEEECC-CCcEEEEeCc
Q 009986 420 FTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDG-KPEGGFYRVFVQRKS-EELWYEMQDL 497 (521)
Q Consensus 420 F~~~~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~avI~H~G-~~~~GHY~a~vk~~~-~~~W~~~nD~ 497 (521)
|.+.. +....+..+ .++|.+|.. ...+|+|+|||+|.| ++++|||+||+|... +++||.|||.
T Consensus 157 f~~~~----~~~~~~~~~--~~~~~~~~~---------~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~ 221 (245)
T cd02673 157 YKLRI----ATSDYLKKN--EEIMKKYCG---------TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDD 221 (245)
T ss_pred eeecc----ccccccccc--ccccccccC---------CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCc
Confidence 97543 222223322 467777764 135699999999999 589999999999876 6899999999
Q ss_pred eeeeeCccccc---CCCcEEEEEE
Q 009986 498 HVSETLPQMVA---LSETYMQIYE 518 (521)
Q Consensus 498 ~V~~v~~~~v~---~~~aYllfYe 518 (521)
.|++++.++|+ ...||||||+
T Consensus 222 ~V~~v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 222 EIRPVSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred eeeEcCHHHHhhccCCceEEEEEC
Confidence 99999999998 5799999996
No 27
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.8e-39 Score=314.77 Aligned_cols=232 Identities=33% Similarity=0.541 Sum_probs=195.4
Q ss_pred CCccCCCCchhhHHHHHHhCchhHHHHhcCcccccCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhcccCCC
Q 009986 193 GLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFR 272 (521)
Q Consensus 193 GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s~~~F~ 272 (521)
||.|+|||||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999999
Q ss_pred CCCcCCHHHHHHHHHHHHHHhhccCC-------CCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCce
Q 009986 273 IGVQSNPVEFMSWLLNTLHSDLRNTK-------KNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITT 345 (521)
Q Consensus 273 ~~~QqDA~EFl~~LLn~L~~~l~~~~-------~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~ 345 (521)
.||||+|||.++|+.|+.++.... ...+.+.++|.|.+.....|.. |+..
T Consensus 21 --~q~Da~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~c~~---------------------c~~~ 77 (255)
T cd02257 21 --EQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLE---------------------CGHE 77 (255)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCchhhhhcccEEeeEEECCC---------------------CCCC
Confidence 799999999999999999987521 2457899999999999999999 9878
Q ss_pred eeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcccc------eeecc--ceeeeEEEEEEecCCCeeEEEE
Q 009986 346 ETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET------VTEVV--RPHVARMRYRVTRLPKYMILHM 417 (521)
Q Consensus 346 s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~------~~~c~--~~~~a~k~~~i~~lP~~Liihl 417 (521)
+.....+..++|++|.... +..+|.++|+.+...+ |..|. ....+.++..|.++|+||+|++
T Consensus 78 ~~~~~~~~~l~l~~~~~~~----------~~~~l~~~l~~~~~~e~~~~~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l 147 (255)
T cd02257 78 SVSTEPELFLSLPLPVKGL----------PQVSLEDCLEKFFKEEILEGDNCYKCEKKKKQEATKRLKIKKLPPVLIIHL 147 (255)
T ss_pred ccCcccceeEEeeccCCCC----------CCCcHHHHHHHhhhhhccCCCCcccCCCCcccceeEEEecccCCceeEEEe
Confidence 8888888899999887421 3578999999988754 33344 3556678888999999999999
Q ss_pred eeEEecC-ceeeeCCeeEeecCCccccccCCCCC-CCCCCCCCCceEEEeEEEEEeccC-CCCeEEEEEEECCCCcEEEE
Q 009986 418 RRFTKNN-FFVEKNPTLVNFPVKNLELKDYIPLP-TPKENEKLRSKYDLIANIVHDGKP-EGGFYRVFVQRKSEELWYEM 494 (521)
Q Consensus 418 kRF~~~~-~~~~K~~~~V~FP~~~Ldl~~~~~~~-~~~~~~~~~~~Y~L~avI~H~G~~-~~GHY~a~vk~~~~~~W~~~ 494 (521)
+||..+. +...|++..|.||. .|++..++... ..........+|+|+|||+|.|.. ++|||+||+|...+++||.|
T Consensus 148 ~R~~~~~~~~~~k~~~~v~~~~-~l~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~ 226 (255)
T cd02257 148 KRFSFNEDGTKEKLNTKVSFPL-ELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKF 226 (255)
T ss_pred eceeeccccccccCCCeEeCCC-cccCccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEE
Confidence 9999876 77889999999995 69998887521 111122335679999999999965 99999999999756999999
Q ss_pred eCceeeeeCcccc-----cCCCcEEEEEE
Q 009986 495 QDLHVSETLPQMV-----ALSETYMQIYE 518 (521)
Q Consensus 495 nD~~V~~v~~~~v-----~~~~aYllfYe 518 (521)
||..|++++.+++ ...+||||||+
T Consensus 227 nD~~V~~v~~~~~~~~~~~~~~~yll~Y~ 255 (255)
T cd02257 227 NDDKVTEVSEEEVLEFGSLSSSAYILFYE 255 (255)
T ss_pred eccccEEcCHHHhhhccCCCCceEEEEEC
Confidence 9999999999998 57899999996
No 28
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-38 Score=354.42 Aligned_cols=300 Identities=25% Similarity=0.420 Sum_probs=243.8
Q ss_pred hhcCCccCCCCchhhHHHHHHhCchhHHHHhcCcc--------cccCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHH
Q 009986 190 RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPE--------NYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQ 261 (521)
Q Consensus 190 ~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~--------~~~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~ 261 (521)
..+||.|+|||||||+.+|+|.+.+++++||+... +.......+...+..++..+|+... ..|.|..+..
T Consensus 245 g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~--~~v~~~~~~~ 322 (842)
T KOG1870|consen 245 GETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNK--SAVAPTSFRT 322 (842)
T ss_pred cccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCc--cccCchhhhh
Confidence 35699999999999999999999999999998521 1223456788999999999999983 5799999999
Q ss_pred HHHHhcccCCCCCCcCCHHHHHHHHHHHHHHhhccCC----------------------------CCCCccccccCcEEE
Q 009986 262 AVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK----------------------------KNTSIIYECFQGELE 313 (521)
Q Consensus 262 ~i~~~s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~----------------------------~~~sii~~~F~g~l~ 313 (521)
.+... .++|.++.|||.+||+.+||+.||+++.... +..++|.++|.|.++
T Consensus 323 ~~~~~-a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~~~ 401 (842)
T KOG1870|consen 323 SLASF-ASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGTYK 401 (842)
T ss_pred hhhhc-cccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeeecceec
Confidence 99998 7899999999999999999999999986432 156799999999999
Q ss_pred EEEEecCCCCCCCCCCcCCCCCCCCCCCCCceeeeeecceeeecCCCCCCc-----------------------------
Q 009986 314 VVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPL----------------------------- 364 (521)
Q Consensus 314 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s~~~~~f~~LsL~lp~~~~----------------------------- 364 (521)
+..+|..+ +.++.++++|..|+|++|....
T Consensus 402 S~~~c~~C---------------------~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 460 (842)
T KOG1870|consen 402 STLQCPTC---------------------GKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAKNGRI 460 (842)
T ss_pred ccccCccC---------------------CCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccccchH
Confidence 99999863 3333333333332222221100
Q ss_pred --------------------------------------------------------------------------------
Q 009986 365 -------------------------------------------------------------------------------- 364 (521)
Q Consensus 365 -------------------------------------------------------------------------------- 364 (521)
T Consensus 461 ~~l~~~l~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 540 (842)
T KOG1870|consen 461 RDLLEYLSRTVGLLSWELKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPRSKGI 540 (842)
T ss_pred HHHHHHHHHHhccchhhcccceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeeccccccccCc
Confidence
Q ss_pred -------------------------------------------------------chh----------------------
Q 009986 365 -------------------------------------------------------FKD---------------------- 367 (521)
Q Consensus 365 -------------------------------------------------------~~~---------------------- 367 (521)
.+.
T Consensus 541 ~~~~~~~~~g~p~~~~~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~~~~~ 620 (842)
T KOG1870|consen 541 RSHVSSKLFGLPLLVSVLSGAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSEDDNS 620 (842)
T ss_pred ccCCCccccCCcceeeccCCCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChhHhcc
Confidence 000
Q ss_pred --------------------hh----h---------c---------------------------------ccCCCCchhh
Q 009986 368 --------------------VM----E---------K---------------------------------NIIPQVPLFN 381 (521)
Q Consensus 368 --------------------~~----~---------~---------------------------------~~~p~vsL~~ 381 (521)
.. . . .-...++|++
T Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~ 700 (842)
T KOG1870|consen 621 DQDLSLECLSEESALRFFQSLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPNSLES 700 (842)
T ss_pred ccccchhhccCcccccccccccccccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcccHHH
Confidence 00 0 0 0001368889
Q ss_pred Hhhhhcccc---------eeeccceeeeEEEEEEecCCCeeEEEEeeEEecCceeeeCCeeEeecCCccccccCCCCCCC
Q 009986 382 ILKKFDGET---------VTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTP 452 (521)
Q Consensus 382 ~L~~f~~~~---------~~~c~~~~~a~k~~~i~~lP~~LiihlkRF~~~~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~ 452 (521)
||+.|...+ |..|+..+.|+|++.+++||+|||||||||++.++...|+.+.|+||+..||+++|+..+..
T Consensus 701 cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~~~~~~~ 780 (842)
T KOG1870|consen 701 CLELFSEPETLGKDDRWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEFVVNKEQ 780 (842)
T ss_pred HHHhhcchhcCCccccccChHHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcchhhccCcc
Confidence 998887644 56677778899999999999999999999999999899999999999999999999985432
Q ss_pred CCCCCCCceEEEeEEEEEeccCCCCeEEEEEEECCCCcEEEEeCceeeeeCcccccCCCcEEEEEEEe
Q 009986 453 KENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQ 520 (521)
Q Consensus 453 ~~~~~~~~~Y~L~avI~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYllfYeR~ 520 (521)
..|+|+||++|+|.+.+|||+||.|+..+++||.|||+.|.++.++.+..+.||+|||+|+
T Consensus 781 -------~~Y~l~av~nHyG~l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~ 841 (842)
T KOG1870|consen 781 -------VLYDLYAVGNHYGQLSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRL 841 (842)
T ss_pred -------ceeeeeeeecccCCcCCcchhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEec
Confidence 6799999999999999999999999988999999999999999999999999999999997
No 29
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-38 Score=335.00 Aligned_cols=294 Identities=20% Similarity=0.307 Sum_probs=240.5
Q ss_pred hhhhhhcCCccCCCCchhhHHHHHHhCchhHHHHhcCcccccC-C----CChHHHHHHHHHHHHHccCCCCCcCChHHHH
Q 009986 186 LEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRH-C----KSPLVHRFGDLTRKIWHARNFKGQVSPHEFL 260 (521)
Q Consensus 186 l~di~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~-~----~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll 260 (521)
-.-+.++||+|-|+|||||+++|-|.++|.+|+-++...+..+ . ...+.+.++.+|..+-.++. .++.|..|-
T Consensus 90 Rpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~l--QyyVPeg~W 167 (944)
T KOG1866|consen 90 RPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQL--QYYVPEGFW 167 (944)
T ss_pred CCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhh--hhhcchhHH
Confidence 3445678999999999999999999999999988775444311 1 12388999999999877763 689999999
Q ss_pred HHHHHhcccCCCCCCcCCHHHHHHHHHHHHHHhhccCCCCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCC
Q 009986 261 QAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDH 340 (521)
Q Consensus 261 ~~i~~~s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 340 (521)
+.++.. +......+||||.|||..||+.+++.++.-. ...++.+.|+|.......|.+
T Consensus 168 k~Fr~~-~~pln~reqhDA~eFf~sLld~~De~LKklg-~p~lf~n~f~G~ysdqKIC~~-------------------- 225 (944)
T KOG1866|consen 168 KQFRLW-GEPLNLREQHDALEFFNSLLDSLDEALKKLG-HPQLFSNTFGGSYSDQKICQG-------------------- 225 (944)
T ss_pred HHhhcc-CCccchHhhhhHHHHHHHHHHHHHHHHHHhC-CcHHHHHHhcCccchhhhhcc--------------------
Confidence 998887 5678889999999999999999999998654 456789999999999999999
Q ss_pred CCCceeeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhccc---------ceeeccceeeeEEEEEEecCCC
Q 009986 341 DNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGE---------TVTEVVRPHVARMRYRVTRLPK 411 (521)
Q Consensus 341 ~C~~~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~---------~~~~c~~~~~a~k~~~i~~lP~ 411 (521)
|-+.-...++|..|+|+|.. -+|++.|++|... .|..|..++...||..|.+||+
T Consensus 226 -CpHRY~~eE~F~~l~l~i~~---------------~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPs 289 (944)
T KOG1866|consen 226 -CPHRYECEESFTTLNLDIRH---------------QNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPS 289 (944)
T ss_pred -CCcccCccccceeeeeeccc---------------chHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCCh
Confidence 98888999999999999874 3677777777532 2556666677778899999999
Q ss_pred eeEEEEeeEEec--CceeeeCCeeEeecCCccccccCCCCCCC------------CCCCCCCceEEEeEEEEEeccCCCC
Q 009986 412 YMILHMRRFTKN--NFFVEKNPTLVNFPVKNLELKDYIPLPTP------------KENEKLRSKYDLIANIVHDGKPEGG 477 (521)
Q Consensus 412 ~LiihlkRF~~~--~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~------------~~~~~~~~~Y~L~avI~H~G~~~~G 477 (521)
+|.||||||.++ +....|-+..+.||- .|||.||+..+.. .......++|+|+|||+|.|.+.+|
T Consensus 290 vl~IqLkRF~yD~e~~~~iK~n~~frFP~-~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGqAsaG 368 (944)
T KOG1866|consen 290 VLAIQLKRFDYDWERECAIKFNDYFRFPR-ELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQASAG 368 (944)
T ss_pred hheehhhhccchhhhccccccchhcccch-hhcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEecccccCc
Confidence 999999999865 567889999999995 6999999875432 1123457899999999999999999
Q ss_pred eEEEEEEEC---CCCcEEEEeCceeeeeCcccccC--------------------CCcEEEEEEEe
Q 009986 478 FYRVFVQRK---SEELWYEMQDLHVSETLPQMVAL--------------------SETYMQIYEQQ 520 (521)
Q Consensus 478 HY~a~vk~~---~~~~W~~~nD~~V~~v~~~~v~~--------------------~~aYllfYeR~ 520 (521)
||++||+.+ ..++||+|||..|++....++.. =.||||||+|.
T Consensus 369 HYySfIk~rr~~~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~ 434 (944)
T KOG1866|consen 369 HYYSFIKQRRGEDGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERM 434 (944)
T ss_pred chhhhhhhhccCCCCceEeccCccccccchhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHh
Confidence 999999864 24699999999999987654321 13999999985
No 30
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-38 Score=331.54 Aligned_cols=291 Identities=19% Similarity=0.259 Sum_probs=238.7
Q ss_pred hhhhhhcCCccCCCCchhhHHHHHHhCchhHHHHhcCcc-cccCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHH
Q 009986 186 LEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPE-NYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVM 264 (521)
Q Consensus 186 l~di~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~-~~~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~ 264 (521)
-..-.||||+|.|.||||||+||+|+.+..||+-+.... ........+..+|+++|..|..++ .+|+..+|....+
T Consensus 188 KkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~p~grdSValaLQr~Fynlq~~~---~PvdTteltrsfg 264 (1089)
T COG5077 188 KKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHPRGRDSVALALQRLFYNLQTGE---EPVDTTELTRSFG 264 (1089)
T ss_pred ccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCCCCccchHHHHHHHHHHHHhccC---CCcchHHhhhhcC
Confidence 345568899999999999999999999999999887543 223445668899999999998887 6899999999888
Q ss_pred HhcccCCCCCCcCCHHHHHHHHHHHHHHhhccCCCCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCc
Q 009986 265 KASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNIT 344 (521)
Q Consensus 265 ~~s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~ 344 (521)
+.+ +....|||.|||=+-|.|.|...+++.. -...+..+|-|++.+.+.|.+ -..
T Consensus 265 Wds---~dsf~QHDiqEfnrVl~DnLEksmrgt~-VEnaln~ifVgkmksyikCvn---------------------vny 319 (1089)
T COG5077 265 WDS---DDSFMQHDIQEFNRVLQDNLEKSMRGTV-VENALNGIFVGKMKSYIKCVN---------------------VNY 319 (1089)
T ss_pred ccc---chHHHHHhHHHHHHHHHHHHHHhhcCCh-hhhHHhHHHHHHhhceeeEEE---------------------ech
Confidence 764 5567799999999999999999877654 234578899999999999998 456
Q ss_pred eeeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhh------cccceeecc--ceeeeEEEEEEecCCCeeEEE
Q 009986 345 TETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKF------DGETVTEVV--RPHVARMRYRVTRLPKYMILH 416 (521)
Q Consensus 345 ~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f------~~~~~~~c~--~~~~a~k~~~i~~lP~~Liih 416 (521)
.+.+.+.||++.|.+..... |++.++.| +|..+..|. +-+.|.|-.-+.+||++|-|+
T Consensus 320 EsarvedfwdiqlNvK~~kn--------------LqeSfr~yIqvE~l~GdN~Y~ae~~GlqdAkKGViFeSlPpVlhlq 385 (1089)
T COG5077 320 ESARVEDFWDIQLNVKGMKN--------------LQESFRRYIQVETLDGDNRYNAEKHGLQDAKKGVIFESLPPVLHLQ 385 (1089)
T ss_pred hhhhHHHHHHHHhcccchhh--------------HHHHHHHhhhheeccCCcccccccccchhhccceeeccCchHHHHH
Confidence 67789999999999887643 44555444 444454443 345677888899999999999
Q ss_pred EeeEEec--CceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEEeEEEEEeccCCCCeEEEEEEECCCCcEEEE
Q 009986 417 MRRFTKN--NFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEM 494 (521)
Q Consensus 417 lkRF~~~--~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~a~vk~~~~~~W~~~ 494 (521)
||||+++ .....|++...+||+ .+||.||++.....+. .....|.|+||++|.|..+.|||+|++|...+|.||+|
T Consensus 386 LKRFeyDfe~d~mvKINDryEFP~-eiDl~pfld~da~kse-n~d~vY~LygVlVHsGDl~~GHyYallKpe~dg~Wykf 463 (1089)
T COG5077 386 LKRFEYDFERDMMVKINDRYEFPL-EIDLLPFLDRDADKSE-NSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKF 463 (1089)
T ss_pred HHHhccccccCceeeecccccCcc-hhccccccCchhhhhc-ccCcEEEEEEEEEeccccCCceEEEEeccccCCCceee
Confidence 9999864 456789999999997 5999999986654432 33478999999999999999999999998889999999
Q ss_pred eCceeeeeCcccccC----------------------CCcEEEEEEEe
Q 009986 495 QDLHVSETLPQMVAL----------------------SETYMQIYEQQ 520 (521)
Q Consensus 495 nD~~V~~v~~~~v~~----------------------~~aYllfYeR~ 520 (521)
||..|+++...+|+. -.||||+|-|+
T Consensus 464 dDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRk 511 (1089)
T COG5077 464 DDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRK 511 (1089)
T ss_pred cceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehH
Confidence 999999999877763 13899999986
No 31
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.2e-36 Score=300.14 Aligned_cols=236 Identities=19% Similarity=0.201 Sum_probs=185.3
Q ss_pred hhhhhcCCccCCCCchhhHHHHHHhCchhHHHHhcCcccccCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHh
Q 009986 187 EDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKA 266 (521)
Q Consensus 187 ~di~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~ 266 (521)
....++||.|.|.|||+||+||+|.++|+||+++....+......++.++|+-|| ..+
T Consensus 11 n~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~lf---------------s~~------- 68 (268)
T cd02672 11 NKTNYAGLENHITNSYCNSLLQLLYFIPPFRNFTAIILVACPKESCLLCELGYLF---------------STL------- 68 (268)
T ss_pred ccccccccccCCccchHHHHHHHHHhcHHHHHHHHhhcccCCcCccHHHHHHHHH---------------HHH-------
Confidence 3456789999999999999999999999999973322222334579999999999 001
Q ss_pred cccCCCCCCcCCHHHHHHHHHHHHHHhhccCCCCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCcee
Q 009986 267 SKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTE 346 (521)
Q Consensus 267 s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s 346 (521)
.+-|-.+|++.++.+..... .. |+..+
T Consensus 69 ------------iq~F~~fll~~i~~~~~~~~--------------------~~---------------------C~~~s 95 (268)
T cd02672 69 ------------IQNFTRFLLETISQDQLGTP--------------------FS---------------------CGTSR 95 (268)
T ss_pred ------------HHHHHHHHHHHHHHHhcccC--------------------CC---------------------CCcee
Confidence 13466788888886532211 23 88999
Q ss_pred eeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcccc------eeeccceeeeEEEEEEecCCC----eeEEE
Q 009986 347 TSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET------VTEVVRPHVARMRYRVTRLPK----YMILH 416 (521)
Q Consensus 347 ~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~------~~~c~~~~~a~k~~~i~~lP~----~Liih 416 (521)
.+.++|+.|+|++|... ..+.++|.+||+.|...+ |..|...+.+.|+.+|.+||+ ||+||
T Consensus 96 ~~~~~~~~LsLpip~~~---------~~~~~sl~~cL~~~~~~E~~~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~ 166 (268)
T cd02672 96 NSVSLLYTLSLPLGSTK---------TSKESTFLQLLKRSLDLEKVTKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVIN 166 (268)
T ss_pred eccccceeeeeecCccc---------cccCCCHHHHHHHHhhhhhcccccccccCcccccEEEEEeecCCCcccceEEEE
Confidence 99999999999999743 224689999999998643 667888888999999999999 99999
Q ss_pred EeeEEecC-------ceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEEeEEEEEeccC-CCCeEEEEEEECC-
Q 009986 417 MRRFTKNN-------FFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKP-EGGFYRVFVQRKS- 487 (521)
Q Consensus 417 lkRF~~~~-------~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~~-~~GHY~a~vk~~~- 487 (521)
+|||.... ....|+...|.||. .+++..+.... .....+|+|+|||+|.|.. ++|||+||+|...
T Consensus 167 lkrf~~~~~~~~~~~~~~~~~~~~v~f~~-~~~~~~~~~~~-----~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~ 240 (268)
T cd02672 167 LSVTNGEFDDINVVLPSGKVMQNKVSPKA-IDHDKLVKNRG-----QESIYKYELVGYVCEINDSSRGQHNVVFVIKVNE 240 (268)
T ss_pred EeccChhhcccCcceeEEEecCCeecccc-cccchhhhccC-----CCCCceEEEEEEEEEecCCCCCCcEEEEEEccCC
Confidence 99998542 34568889999996 46666554321 1234679999999999954 8999999999854
Q ss_pred ---CCcEEEEeCceeeeeCcccccCCCcEEEEEE
Q 009986 488 ---EELWYEMQDLHVSETLPQMVALSETYMQIYE 518 (521)
Q Consensus 488 ---~~~W~~~nD~~V~~v~~~~v~~~~aYllfYe 518 (521)
.++||.|||..|++|+. .||||||+
T Consensus 241 ~~~~~~WylFND~~V~~vs~------~aYiLfY~ 268 (268)
T cd02672 241 ESTHGRWYLFNDFLVTPVSE------LAYILLYQ 268 (268)
T ss_pred CCCCCcEEEecCeEEEEcCc------hheeeecC
Confidence 57899999999999998 89999995
No 32
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-32 Score=268.30 Aligned_cols=205 Identities=19% Similarity=0.320 Sum_probs=155.3
Q ss_pred CCccCCC-CchhhHHHHHHhCchhHHHHhcCcccccCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhcccCC
Q 009986 193 GLNNIKE-TDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRF 271 (521)
Q Consensus 193 GL~NlGN-TCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s~~~F 271 (521)
|+.|.+| +|||-|.|=+|+.
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~----------------------------------------------------------- 21 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA----------------------------------------------------------- 21 (241)
T ss_pred CCccccCceeehHHHHHHHHH-----------------------------------------------------------
Confidence 8899999 9999999999887
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhhccCCCCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCceeeeeec
Q 009986 272 RIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMP 351 (521)
Q Consensus 272 ~~~~QqDA~EFl~~LLn~L~~~l~~~~~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s~~~~~ 351 (521)
+||||.|||.+|++.|..-+-. ..-++|.|--... . ..+...+.
T Consensus 22 ---~q~D~~e~~~~l~~~~~~~~~~------~~~~~~~~g~~~~--------------~-------------~~~~~~e~ 65 (241)
T cd02670 22 ---EQQDPEEFFNFITDKLLMPLLE------PKVDIIHGGKKDQ--------------D-------------DDKLVNER 65 (241)
T ss_pred ---HhcCHHHHHHHHHHHHhhhhhh------HHHHHHhcCcccc--------------c-------------cccccccc
Confidence 7999999999999998864332 2334444311110 0 11333455
Q ss_pred ceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcccceeeccceeeeEEEEEEecCCCeeEEEEeeEEecCceeeeCC
Q 009986 352 FLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNP 431 (521)
Q Consensus 352 f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~~~~c~~~~~a~k~~~i~~lP~~LiihlkRF~~~~~~~~K~~ 431 (521)
|+ +|+||.... ...++|++||+.|+..+. |.++|++|+||||||.++.+...|+.
T Consensus 66 ~l--~l~ip~~~~---------~~~~tLedcLe~~~~~e~--------------i~~lP~vLiIhLKRF~~~~~~~~Kl~ 120 (241)
T cd02670 66 LL--QIPVPDDDD---------GGGITLEQCLEQYFNNSV--------------FAKAPSCLIICLKRYGKTEGKAQKMF 120 (241)
T ss_pred eE--EeecccCCC---------CCcCCHHHHHHHHhchhh--------------hhhCCCeEEEEEEccccCCCcceeCC
Confidence 55 444543211 135899999999987663 89999999999999998877778999
Q ss_pred eeEeecCCccccccCCCCCCC---------------C--CCCCCCceEEEeEEEEEec-cCCCCeEEEEEEECC------
Q 009986 432 TLVNFPVKNLELKDYIPLPTP---------------K--ENEKLRSKYDLIANIVHDG-KPEGGFYRVFVQRKS------ 487 (521)
Q Consensus 432 ~~V~FP~~~Ldl~~~~~~~~~---------------~--~~~~~~~~Y~L~avI~H~G-~~~~GHY~a~vk~~~------ 487 (521)
+.|.||. .|||.+|+..... . .......+|+|+|||+|.| ++++|||+||+|...
T Consensus 121 ~~I~fP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~ 199 (241)
T cd02670 121 KKILIPD-EIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTET 199 (241)
T ss_pred cEECCCC-cCCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCccccccc
Confidence 9999995 6999999864320 0 1123356899999999999 589999999999975
Q ss_pred -----CCcEEEEeCceeeeeCcc------cccCCCcEEEEEE
Q 009986 488 -----EELWYEMQDLHVSETLPQ------MVALSETYMQIYE 518 (521)
Q Consensus 488 -----~~~W~~~nD~~V~~v~~~------~v~~~~aYllfYe 518 (521)
++.||.|||..|+.+... .+....||||||+
T Consensus 200 ~~~~~~~~W~~FDD~~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 200 DNEAYNAQWVFFDDMADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred ccCCCCCeEEEecCcccccccccccccchhcccCCceEEEeC
Confidence 379999999998876532 5678999999996
No 33
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4e-32 Score=314.58 Aligned_cols=286 Identities=21% Similarity=0.272 Sum_probs=237.6
Q ss_pred cCCccCCCCchhhHHHHHHhCchhHHHHhcCccc---ccCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhcc
Q 009986 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPEN---YRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASK 268 (521)
Q Consensus 192 ~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~---~~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s~ 268 (521)
+||.|+||||||||+||+|+.++.||..+..... .......+..+|+.||..|...+ ..+|.|.++...+...+
T Consensus 171 vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~--~k~Vdt~~~~~~~~~~~- 247 (1093)
T KOG1863|consen 171 VGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSK--RKYVDTSELTKSLGWDS- 247 (1093)
T ss_pred ccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcC--CCCcCchhhhhhhhccc-
Confidence 7999999999999999999999999999987652 22344568889999999999887 46899999999998873
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHHHhhccCCCCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCceeee
Q 009986 269 KRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETS 348 (521)
Q Consensus 269 ~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s~~ 348 (521)
.....|||++||+..|++.|...+.... ....+.++|.|++...+.|.. |...+..
T Consensus 248 --~~~~~QqDvqEf~~~l~d~LE~~~~~~~-~~~~l~~lf~g~~~~~i~c~~---------------------~~~~s~r 303 (1093)
T KOG1863|consen 248 --NDSFEQQDVQEFLTKLLDWLEDSMIDAK-VENTLQDLFTGKMKSVIKCID---------------------VDFESSR 303 (1093)
T ss_pred --ccHHhhhhHHHHHHHHHHHHHhhccchh-hhhhhhhhhcCCcceEEEEEe---------------------eeeeccc
Confidence 5577999999999999999999887665 456799999999999999998 7777789
Q ss_pred eecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcccc--------eeeccceeeeEEEEEEecCCCeeEEEEeeE
Q 009986 349 RMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET--------VTEVVRPHVARMRYRVTRLPKYMILHMRRF 420 (521)
Q Consensus 349 ~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~--------~~~c~~~~~a~k~~~i~~lP~~LiihlkRF 420 (521)
.+.|+++.|.+.... +|.+.|..|...+ +.+|.+.+.|.+...+.+||++|.|+|+||
T Consensus 304 ~e~f~d~ql~~~g~~--------------nl~~sf~~y~~~E~l~gdn~~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf 369 (1093)
T KOG1863|consen 304 SESFLDLQLNGKGVK--------------NLEDSLHLYFEAEILLGDNKYDAECHGLQDAKKGVLFDSLPPVLFIQLMRF 369 (1093)
T ss_pred cccccCccccccchh--------------hHHHHHHHhhhHHHhcCCccccccccchhhhhcceeeccCCchhhhhhhhe
Confidence 999999999887642 3677777776533 345666677788889999999999999999
Q ss_pred Eec--CceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEEeEEEEEeccCCCCeEEEEEEECCCCcEEEEeCce
Q 009986 421 TKN--NFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLH 498 (521)
Q Consensus 421 ~~~--~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~ 498 (521)
.++ .....|++....||. .|+|.+|+.......... .+.|+|.||++|.|..++|||++|++.+..++|+.|||..
T Consensus 370 ~~~~~~~~~~Ki~d~~~fp~-~i~~d~~~~~~~~~~~~~-~~~y~l~~v~vh~g~~~~ghy~~~i~~~~~~~w~kfdd~~ 447 (1093)
T KOG1863|consen 370 EYDFSTGQKIKINDKFEFPL-IIDMDRYLSRFKAEESER-SAVYSLHAVLVHSGDAHSGHYVAYINPKLDGKWVKFDDLV 447 (1093)
T ss_pred eeeccCCceeehhhccCCcc-ccccchhccccchhhhhc-cceeccchhhcccccccCccceeeecchhhccceeccCce
Confidence 986 567889999999996 699999988511111111 2589999999998899999999999988899999999999
Q ss_pred eeeeCcccccC----------CC------cEEEEEEEe
Q 009986 499 VSETLPQMVAL----------SE------TYMQIYEQQ 520 (521)
Q Consensus 499 V~~v~~~~v~~----------~~------aYllfYeR~ 520 (521)
|+.++...++. +. ||+|+|.|.
T Consensus 448 v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~ 485 (1093)
T KOG1863|consen 448 VTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRD 485 (1093)
T ss_pred eeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEec
Confidence 99998655432 22 899999985
No 34
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-32 Score=284.66 Aligned_cols=278 Identities=19% Similarity=0.288 Sum_probs=227.5
Q ss_pred CCChhhhhhcCCccCCCCchhhHHHHHHhCchhHHHHhcCcccccCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHH
Q 009986 183 DPSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQA 262 (521)
Q Consensus 183 d~~l~di~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~ 262 (521)
..++.-++|+||.|...|||+|+.+|+|+-.|.+++-+.... +..+....|-+.
T Consensus 79 ~~~~~~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~--------------------------~~~~et~dlt~s 132 (1203)
T KOG4598|consen 79 PVDENGHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSE--------------------------NDSLETKDLTQS 132 (1203)
T ss_pred ccccCCcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCC--------------------------cccccchhhHhh
Confidence 345666789999999999999999999999999988776221 134555566666
Q ss_pred HHHhcccCCCCCCcCCHHHHHHHHHHHHHHhhccCCCCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCC
Q 009986 263 VMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDN 342 (521)
Q Consensus 263 i~~~s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C 342 (521)
+++.++. .++|||.+|+-+.+++.|....++.+ ....|++++.|++...+.|.. |
T Consensus 133 fgw~s~e---a~~qhdiqelcr~mfdalehk~k~t~-~~~li~~ly~g~m~d~v~cl~---------------------c 187 (1203)
T KOG4598|consen 133 FGWTSNE---AYDQHDVQELCRLMFDALEHKWKGTE-HEKLIQDLYRGTMEDFVACLK---------------------C 187 (1203)
T ss_pred cCCCcch---hhhhhhHHHHHHHHHHHHHhhhcCch-HHHHHHHHhcchHHHHHHHHH---------------------c
Confidence 6665444 67899999999999999998887765 456899999999999999999 9
Q ss_pred CceeeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcccc---------eeeccceeeeEEEEEEecCCCee
Q 009986 343 ITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET---------VTEVVRPHVARMRYRVTRLPKYM 413 (521)
Q Consensus 343 ~~~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~---------~~~c~~~~~a~k~~~i~~lP~~L 413 (521)
+..+++.+.|++|.|++.+-... .---+++++|..|...+ |..|++++.|-|-++|+.+|-+|
T Consensus 188 ~~e~~~~d~fld~pl~v~pfg~~--------~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~l 259 (1203)
T KOG4598|consen 188 GRESVKTDYFLDLPLAVKPFGAI--------HAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLL 259 (1203)
T ss_pred CccccccceeecccccccCCcch--------hhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceee
Confidence 99999999999988888664311 11247788888886544 66788889999999999999999
Q ss_pred EEEEeeEE--ecCceeeeCCeeEeecCCccccccCCCCCCCCC-------------------------------------
Q 009986 414 ILHMRRFT--KNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKE------------------------------------- 454 (521)
Q Consensus 414 iihlkRF~--~~~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~------------------------------------- 454 (521)
.||||||. ++.+...|++..|+|| +.|||..|+.......
T Consensus 260 t~~lkrfdfdy~tmhriklnd~~tfp-~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~ 338 (1203)
T KOG4598|consen 260 TIQLKRFDFDYNTMHRIKLNDKMTFP-DVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSP 338 (1203)
T ss_pred EEeeecccccchheeeeeecccccCc-ccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCc
Confidence 99999977 4567889999999999 5799999986421100
Q ss_pred ------------------------CCCCCceEEEeEEEEEeccCCCCeEEEEEEECCCCcEEEEeCceeeeeCccccc--
Q 009986 455 ------------------------NEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVA-- 508 (521)
Q Consensus 455 ------------------------~~~~~~~Y~L~avI~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~-- 508 (521)
...++..|+|+||.+|.|++.+|||+||+|+..+++||.|||..|+-+.+++|.
T Consensus 339 ~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~imihsg~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~s 418 (1203)
T KOG4598|consen 339 NRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVMVHSGNAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKS 418 (1203)
T ss_pred ccccCccccccCCcCchhhhhhHhhcCCccHHHhhhhheecCCCCCceeeeeecccCcCceEEecCccccccCHHHHHHh
Confidence 112567899999999999999999999999998999999999999999988875
Q ss_pred -----------CCCcEEEEEEEe
Q 009986 509 -----------LSETYMQIYEQQ 520 (521)
Q Consensus 509 -----------~~~aYllfYeR~ 520 (521)
+..||||.|+|.
T Consensus 419 fgg~~~~~~~s~tnaymlmyr~i 441 (1203)
T KOG4598|consen 419 FGGHPSGWNQSNTNAYMLMYRRI 441 (1203)
T ss_pred hCCCCCCccccCcchhhhhhhhc
Confidence 246999999985
No 35
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.97 E-value=2.8e-29 Score=254.74 Aligned_cols=271 Identities=23% Similarity=0.308 Sum_probs=220.0
Q ss_pred cCCccCCCCchhhHHHHHHhCchhHHHHhcCcccccCCCChHHHHHHHHHHHHH-ccCCCCCcCChHHHHHHHHHhcccC
Q 009986 192 VGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIW-HARNFKGQVSPHEFLQAVMKASKKR 270 (521)
Q Consensus 192 ~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~-s~~~~~~~vsP~~ll~~i~~~s~~~ 270 (521)
+||.|.+++||+||+||+|..+|++|+.++... -.....+|.+.|+-||+.|- ..+ .....+..|+++++.. ...
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~-~c~~e~cL~cELgfLf~ml~~~~~--g~~cq~sNflr~l~~~-~~a 76 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL-ECPKEFCLLCELGFLFDMLDSKAK--GINCQASNFLRALSWI-PEA 76 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc-CCCccccHHHHHHHHHHHhhhhcC--CCcChHHHHHHHHhcC-HHH
Confidence 399999999999999999999999999999432 13346799999999999998 544 4567788999999886 344
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHhhccCCC------------CCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCC
Q 009986 271 FRIGVQSNPVEFMSWLLNTLHSDLRNTKK------------NTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGD 338 (521)
Q Consensus 271 F~~~~QqDA~EFl~~LLn~L~~~l~~~~~------------~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~ 338 (521)
...+.|+|.++|+++||++|+.++..... ..+.|.++|........+|..
T Consensus 77 ~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~------------------ 138 (295)
T PF13423_consen 77 AALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTS------------------ 138 (295)
T ss_pred HhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccc------------------
Confidence 66677999999999999999999865442 356789999999999999988
Q ss_pred CCCCCceeeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcc------cceeeccceeeeEEEEEEecCCCe
Q 009986 339 DHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDG------ETVTEVVRPHVARMRYRVTRLPKY 412 (521)
Q Consensus 339 ~~~C~~~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~------~~~~~c~~~~~a~k~~~i~~lP~~ 412 (521)
|+..+.+.++...+.|..|..+ +.+++.++|+.+.. ..|..|.+......+.+|.+||+|
T Consensus 139 ---c~~~~~~~~~~~~~~l~yp~~~-----------~~~tf~~~Le~sl~~e~~~~a~C~~C~~~~~~~~~r~i~~LPpV 204 (295)
T PF13423_consen 139 ---CGHESVKESSTLVLDLPYPPSN-----------SNVTFSQVLEHSLNREQQTRAWCEKCNKYQPTEQRRTIRSLPPV 204 (295)
T ss_pred ---cCCeEEeecceeeeeccCCCCC-----------ccchHHHHHHHHHhhcccccccccccccccceeeeeeccCCCcE
Confidence 9988888888877777777622 35788999987755 236777777666777789999999
Q ss_pred eEEEEeeEEecCceeeeCCeeEeecCCccccccCCCCCCCC--CCCCCCceEEEeEEEEEec-cCCCCeEEEEEEECC--
Q 009986 413 MILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPK--ENEKLRSKYDLIANIVHDG-KPEGGFYRVFVQRKS-- 487 (521)
Q Consensus 413 LiihlkRF~~~~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~--~~~~~~~~Y~L~avI~H~G-~~~~GHY~a~vk~~~-- 487 (521)
|.|.++|+....+...|+...+.+|.. +++..++...... .......+|+|.|+|+|.| +.++||||+|||...
T Consensus 205 L~In~~~~~~~~~w~~~~~~~~~ip~~-i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~ 283 (295)
T PF13423_consen 205 LSINLNRYSEEEFWPKKNWLKIWIPPS-INLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSD 283 (295)
T ss_pred EEEEccCCCcccccccccCCceeccee-eeccccccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCC
Confidence 999999988775448899999999964 9888887543321 1345678999999999999 688999999999963
Q ss_pred CCcEEEEeCcee
Q 009986 488 EELWYEMQDLHV 499 (521)
Q Consensus 488 ~~~W~~~nD~~V 499 (521)
+.+||.|||-.|
T Consensus 284 ~~~W~lFNDflV 295 (295)
T PF13423_consen 284 DSQWYLFNDFLV 295 (295)
T ss_pred CCcEEEECcEeC
Confidence 369999999654
No 36
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-28 Score=266.34 Aligned_cols=286 Identities=26% Similarity=0.381 Sum_probs=220.7
Q ss_pred cCCccCCCCchhh--HHHHHHhCchhHHHHhcCcccccCC----CChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHH
Q 009986 192 VGLNNIKETDFVN--VTIQSLMRVTPLRNFFLIPENYRHC----KSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMK 265 (521)
Q Consensus 192 ~GL~NlGNTCYmN--sVLQ~L~~ip~fr~~~l~~~~~~~~----~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~ 265 (521)
.|..|.+++|+-| +|.|.+....+++...+........ ...+...+..++...-........+.|..++..+++
T Consensus 233 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~~~~~~~ 312 (587)
T KOG1864|consen 233 FGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPTRFISDLIK 312 (587)
T ss_pred cCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhhcccccccCcchhhhhhhh
Confidence 4999999999999 9999999988888665532211111 122333333333333322223467999999999999
Q ss_pred hcccCCCCCCcCCHHHHHHHHHHHHHHhhccCC------------C-------------------CCCccccccCcEEEE
Q 009986 266 ASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK------------K-------------------NTSIIYECFQGELEV 314 (521)
Q Consensus 266 ~s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~------------~-------------------~~sii~~~F~g~l~~ 314 (521)
. +..|..+.||||+||+.++++.+++.+.... + ....++.+|+|++..
T Consensus 313 ~-~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf~g~l~~ 391 (587)
T KOG1864|consen 313 E-NELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLFQGILTN 391 (587)
T ss_pred c-CCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhhcCeeee
Confidence 8 7999999999999999999999998764221 0 245788999999999
Q ss_pred EEEecCCCCCCCCCCcCCCCCCCCCCCCCceeeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhccc-----
Q 009986 315 VKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGE----- 389 (521)
Q Consensus 315 ~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~----- 389 (521)
++.|.. |...+...+.|.+++++++.. ...++..||..|..+
T Consensus 392 et~Cls---------------------c~t~T~~de~f~D~~~~v~~d------------e~~si~~~l~~~~~~e~l~g 438 (587)
T KOG1864|consen 392 ETRCLS---------------------CETITSRDEGFLDLSVAVEID------------ENTSITNLLKSFSSTETLSG 438 (587)
T ss_pred eeeecc---------------------ccccccccccccccceecccc------------ccccHHHHHHHhcchhhccC
Confidence 999999 999999999999999999853 135677777666543
Q ss_pred ----ceeeccceeeeEEEEEEecCCCeeEEEEeeEEecC--ceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEE
Q 009986 390 ----TVTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNN--FFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYD 463 (521)
Q Consensus 390 ----~~~~c~~~~~a~k~~~i~~lP~~LiihlkRF~~~~--~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~ 463 (521)
.|..|...+.|.+++.++++|.+|+||||||.+.. ....|+...|.||++ |.+.........+ ..+|+
T Consensus 439 ~nky~c~~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~ple-l~l~~~~~~~~~~-----~~~Y~ 512 (587)
T KOG1864|consen 439 ENKYSCENCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLE-LRLKDTLKDDNNP-----DRKYD 512 (587)
T ss_pred CCcccccccCchhhHHHhccccCCcceeeeehhccccccccccccccccccccccc-eeeccccccccCc-----cceee
Confidence 26678888899999999999999999999999763 245789999999964 7776554422111 35799
Q ss_pred EeEEEEEec-cCCCCeEEEEEEECCCCc-EEEEeCceeeeeCcccccC---CCcEEEEEEE
Q 009986 464 LIANIVHDG-KPEGGFYRVFVQRKSEEL-WYEMQDLHVSETLPQMVAL---SETYMQIYEQ 519 (521)
Q Consensus 464 L~avI~H~G-~~~~GHY~a~vk~~~~~~-W~~~nD~~V~~v~~~~v~~---~~aYllfYeR 519 (521)
|+|||+|.| +++.|||+||+|.. +. |+.|||..|..++.+.|.. ...|+++|..
T Consensus 513 L~avVvH~G~~p~~GHYia~~r~~--~~nWl~fdD~~V~~~s~~~v~~~~~~s~~~~~~~~ 571 (587)
T KOG1864|consen 513 LVAVVVHLGSTPNRGHYVAYVKSL--DFNWLLFDDDNVEPISEEPVSEFTGSSGDTLFYYV 571 (587)
T ss_pred EEEEEEeccCCCCCcceEEEEeeC--CCCceecccccccccCcchhhhccCCCccceeeeE
Confidence 999999999 99999999999994 44 9999999999999988764 4567777754
No 37
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.2e-28 Score=239.60 Aligned_cols=295 Identities=21% Similarity=0.272 Sum_probs=214.5
Q ss_pred hhhcCCccCCCCchhhHHHHHHhCchhHHHHhcCccc----ccCCCChHHHHHHHHHHHHHccC----------------
Q 009986 189 IRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPEN----YRHCKSPLVHRFGDLTRKIWHAR---------------- 248 (521)
Q Consensus 189 i~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~----~~~~~~~l~~~l~~L~~~l~s~~---------------- 248 (521)
|.+.|+.|-||-|||||+||+|+.++||.+.+-.... ......+++.++..+.+.+-+..
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~~ 105 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEHV 105 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCccccc
Confidence 6678999999999999999999999999987753221 11234567777776666554211
Q ss_pred ----------CCCCcCChHHHHHHHHHhcccCC---CCCCcCCHHHHHHHHHHHHHHhhccCCC----------------
Q 009986 249 ----------NFKGQVSPHEFLQAVMKASKKRF---RIGVQSNPVEFMSWLLNTLHSDLRNTKK---------------- 299 (521)
Q Consensus 249 ----------~~~~~vsP~~ll~~i~~~s~~~F---~~~~QqDA~EFl~~LLn~L~~~l~~~~~---------------- 299 (521)
.....+-|..+...++.. ++| ..|+|.||.|||.++||.||+++....+
T Consensus 106 ~~~ses~~~d~~~dav~~d~~~~~l~t~--~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i~ 183 (420)
T KOG1871|consen 106 VEKSESNKSDLQGDAVKPDPIYLDLLTM--SRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLIN 183 (420)
T ss_pred cchhhhhhhcccCccccCCchhhhcccC--CchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCccccccccccc
Confidence 011244455555555543 344 3499999999999999999999743210
Q ss_pred --------------------------------------CCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCC
Q 009986 300 --------------------------------------NTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHD 341 (521)
Q Consensus 300 --------------------------------------~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ 341 (521)
..+.|+++|+|++++.+.-.+
T Consensus 184 ~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~--------------------- 242 (420)
T KOG1871|consen 184 NGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPS--------------------- 242 (420)
T ss_pred ccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccc---------------------
Confidence 356788888888887776555
Q ss_pred CCceeeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcccceee-----ccceeeeEEEEEEecCCCeeEEE
Q 009986 342 NITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTE-----VVRPHVARMRYRVTRLPKYMILH 416 (521)
Q Consensus 342 C~~~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~~~~-----c~~~~~a~k~~~i~~lP~~Liih 416 (521)
.+.+.+.+||..|.|+|....+ -++.+.+..+.+.+... -+....+.++..+.+||++|++|
T Consensus 243 -nkeS~tlqPF~tlqldiq~~~i------------~sv~~ales~~~re~lp~~st~s~~eV~~s~q~~leklp~vlilh 309 (420)
T KOG1871|consen 243 -NKESATLQPFFTLQLDIQSEKI------------HSVQDALESLVARESLPGYSTKSGQEVEASSQTTLEKLPPVLILH 309 (420)
T ss_pred -cccccccCccceeeeeeecccc------------CCHHHHhhccChhhcccceecCCCCeechhhhhhHhhcchhhhhh
Confidence 2566889999999999865432 35566666665543211 12223456788899999999999
Q ss_pred EeeEEec-CceeeeCCeeEeecCCccccccCCCCCCCC-CCCCCCceEEEeEEEEEec-cCCCCeEEEEEEECCCCcEEE
Q 009986 417 MRRFTKN-NFFVEKNPTLVNFPVKNLELKDYIPLPTPK-ENEKLRSKYDLIANIVHDG-KPEGGFYRVFVQRKSEELWYE 493 (521)
Q Consensus 417 lkRF~~~-~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~-~~~~~~~~Y~L~avI~H~G-~~~~GHY~a~vk~~~~~~W~~ 493 (521)
++||.+. ....+|+...++||.. |.+..-+-...-+ ........|+|+|+|.|.| +...|||++-+.+..-+.|+.
T Consensus 310 lkrF~ye~tgg~~k~~K~i~~~~~-l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~r 388 (420)
T KOG1871|consen 310 LKRFVYEKTGGARKLGKKIEYPWT-LKISKNCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQR 388 (420)
T ss_pred hhHHHHHhccchhhhchhhhccce-eeechhhhccccchhhhccccccceEEEEEecccccccCceEEeeeecccCceeE
Confidence 9999976 6778999999999964 7775544321111 1122345699999999999 788999999999987889999
Q ss_pred EeCceeeeeCcccccC----CCcEEEEEEEe
Q 009986 494 MQDLHVSETLPQMVAL----SETYMQIYEQQ 520 (521)
Q Consensus 494 ~nD~~V~~v~~~~v~~----~~aYllfYeR~ 520 (521)
+||..|..+..++|.. ..+|+|.|.|.
T Consensus 389 IDD~~i~~v~q~dv~~~t~~r~~yllyY~~~ 419 (420)
T KOG1871|consen 389 IDDALILFVAQEDVEKVTGSRTPYLLYYIEA 419 (420)
T ss_pred eccceeeeccHhhhccccCccchheeEeeec
Confidence 9999999999999875 45899999875
No 38
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.1e-27 Score=242.09 Aligned_cols=294 Identities=21% Similarity=0.247 Sum_probs=205.7
Q ss_pred hcCCccCCCCchhhHHHHHHhCchhHHHHhcCcccccCC------CChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHH
Q 009986 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHC------KSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVM 264 (521)
Q Consensus 191 ~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~------~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~ 264 (521)
.+|+.|+|||||||+.+|+|-.+|+++..+....-.... ...++..+..+|+.+.+. +.+.|.-+++.+.
T Consensus 105 p~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~----~~v~pi~llqtl~ 180 (473)
T KOG1872|consen 105 PVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK----GAVAPINLLQTLS 180 (473)
T ss_pred CccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc----CCcchHHHHHHHH
Confidence 459999999999999999999999998877643211111 234666777777777665 5799999999999
Q ss_pred HhcccCCCC------CCcCCHHHHHHHHHHHHHHhhccCC---CCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCC
Q 009986 265 KASKKRFRI------GVQSNPVEFMSWLLNTLHSDLRNTK---KNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSD 335 (521)
Q Consensus 265 ~~s~~~F~~------~~QqDA~EFl~~LLn~L~~~l~~~~---~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~ 335 (521)
.. -|+|.- +.||||.|.+..++-.++..+.... .....+...|++.+..+..|...+..
T Consensus 181 ~~-~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~~~~~~~d~~f~~~~~~t~~~~e~e~~----------- 248 (473)
T KOG1872|consen 181 SQ-YPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAPCLEAEAAAGFGAEFSTTMSCSEGEDE----------- 248 (473)
T ss_pred HH-hHHHHHHhhhhhHHHHHHhHhHHHhhhheeccccccccccchhHHHHHhhccccccceeeccCccc-----------
Confidence 88 577766 8999999999999999999876543 23456788899999988888772100
Q ss_pred CCCCCCCCceeeeeecceeeecCCCCCCcch-hhhhcccCCCCchhhHhhhhcccceeeccceeeeEEEEEEecCCCeeE
Q 009986 336 GGDDHDNITTETSRMPFLMLGLDLPPPPLFK-DVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVTRLPKYMI 414 (521)
Q Consensus 336 ~~~~~~C~~~s~~~~~f~~LsL~lp~~~~~~-~~~~~~~~p~vsL~~~L~~f~~~~~~~c~~~~~a~k~~~i~~lP~~Li 414 (521)
......+.|..|+.-+-....+. .++. ..|.+.+.+-.. .-+......|...|.+||.||.
T Consensus 249 --------~~~~~~E~~~~L~c~i~~~~~~~k~Gl~------~~~~e~~~K~s~----~lgr~a~y~k~~~isrlP~ylT 310 (473)
T KOG1872|consen 249 --------GGGAGRELVDQLKCIINKTVHDMRFGLK------SGLSEEIQKISS----ILGRPAAYQKVMYISRLPEYLT 310 (473)
T ss_pred --------ccccccccccccceEEeeeechhhhhhh------hhhhhhhhccCc----ccCCChHHHHHhHhhcCcccce
Confidence 11111455555555443322111 1110 011112211110 0111111235677999999999
Q ss_pred EEEeeEEecC--ceeeeCCeeEeecCCccccccCCCCCCCCC--------------------------------------
Q 009986 415 LHMRRFTKNN--FFVEKNPTLVNFPVKNLELKDYIPLPTPKE-------------------------------------- 454 (521)
Q Consensus 415 ihlkRF~~~~--~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~-------------------------------------- 454 (521)
|++.||.+.. ...-|+-..|.||. .||..++++++....
T Consensus 311 vq~vrf~~k~k~~~~akil~~V~fP~-~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~ 389 (473)
T KOG1872|consen 311 VQEVRFFSKAKIMVVAKILNAVNFPK-DLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEG 389 (473)
T ss_pred EEEEEEEeccccchHHHHHHhccChh-hhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccc
Confidence 9999998653 34567888999997 499988887432100
Q ss_pred -------CCCCCceEEEeEEEEEec-cCCCCeEEEEEEECCCCcEEEEeCceeeeeCcccccC-------CCcEEEEEEE
Q 009986 455 -------NEKLRSKYDLIANIVHDG-KPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVAL-------SETYMQIYEQ 519 (521)
Q Consensus 455 -------~~~~~~~Y~L~avI~H~G-~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~-------~~aYllfYeR 519 (521)
+......|+|+|||.|.| +..+|||+|++|.. .++|++|||.+|+-+..+.+.. ..||||.|+-
T Consensus 390 ~~~~~~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~s-~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk~ 468 (473)
T KOG1872|consen 390 MYNKSGGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRVS-EDKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVLLYKA 468 (473)
T ss_pred hhccccccccccceeeeeEeeeccccccCCCcceEEEecc-CCceeeccccccccccccceeeecCCCccchhhheeecc
Confidence 111246799999999999 89999999999997 6699999999999999998874 4599999975
Q ss_pred e
Q 009986 520 Q 520 (521)
Q Consensus 520 ~ 520 (521)
+
T Consensus 469 ~ 469 (473)
T KOG1872|consen 469 R 469 (473)
T ss_pred c
Confidence 3
No 39
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=99.61 E-value=1.3e-16 Score=123.72 Aligned_cols=62 Identities=35% Similarity=0.617 Sum_probs=53.5
Q ss_pred ccccCCC-CceEEecccCcccccCCCCCCcccccccCCccEEEEeCCCceEecCCCCcccCCC
Q 009986 124 CSVSLSN-LNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPS 185 (521)
Q Consensus 124 Cs~~ls~-~nl~~CL~CG~~~~G~~~~~ha~~H~~~~~H~v~v~l~t~~vyc~~~~~~v~d~~ 185 (521)
|++|.+. .++|+||+||.++||++.++||+.|+++++|+|+|++.+..||||+|+++|.++.
T Consensus 1 C~~C~~~~~~lw~CL~Cg~~~C~~~~~~Ha~~H~~~~~H~l~v~~~~~~i~C~~C~~~v~~~~ 63 (63)
T PF02148_consen 1 CSVCGSTNSNLWLCLTCGYVGCGRYSNGHALKHYKETGHPLAVSLSTGSIWCYACDDYVYDPE 63 (63)
T ss_dssp -SSSHTCSSSEEEETTTS-EEETTTSTSHHHHHHHHHT--EEEETTTTCEEETTTTEEEESTT
T ss_pred CCCCCCcCCceEEeCCCCcccccCCcCcHHHHhhcccCCeEEEECCCCeEEEcCCCcEEeCCC
Confidence 5566555 8999999999999999999999999999999999999999999999999998863
No 40
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.45 E-value=3.2e-13 Score=146.68 Aligned_cols=302 Identities=16% Similarity=0.127 Sum_probs=188.3
Q ss_pred hhhcCCccCCCCchhhHHHHHHhCchhHHHHhcCcccccCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhcc
Q 009986 189 IRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASK 268 (521)
Q Consensus 189 i~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s~ 268 (521)
-.|+||.--+-+-|-|++||.|..+|++|.+++. +......||.|.|+-||..|-.+.. .......|+.+++...-
T Consensus 497 T~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~--H~C~~e~CL~CELGFLF~Ml~~S~G--~~Cqa~NFlraf~t~~~ 572 (1118)
T KOG1275|consen 497 TTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLR--HICTKEFCLLCELGFLFTMLDSSTG--DPCQANNFLRAFRTNPE 572 (1118)
T ss_pred ceeeccCCCCchHHHHHHHHHHHhccHHHHHHHc--CccchhHHHHHHHHHHHHHHhhhcC--CccchhHHHHHHhhChH
Confidence 4577999999999999999999999999999994 3444567999999999988876652 35566677777765411
Q ss_pred cCCCC-----------------------------CCcCCHHHHHHHHHHHHHHhhccCCCCCCccccccCcEEEEEEEec
Q 009986 269 KRFRI-----------------------------GVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIP 319 (521)
Q Consensus 269 ~~F~~-----------------------------~~QqDA~EFl~~LLn~L~~~l~~~~~~~sii~~~F~g~l~~~~~c~ 319 (521)
..=-+ ..-+|.++|..........+-.-.......+.+.|.-+++....|.
T Consensus 573 a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~~~~~~~vn~~~~l~q~F~~~~e~~~~Cg 652 (1118)
T KOG1275|consen 573 ASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESVDGESFKVNYAPVLQQSFCQEIEKSLRCG 652 (1118)
T ss_pred hhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhcccCceeeecchhHHHHHhhhHHHHhhhcc
Confidence 10000 1112222322222222111111111234578889998888888888
Q ss_pred CCCCCCCCCCcCCCCCCCCCCCCCceeeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhc--ccceeeccce
Q 009986 320 KNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFD--GETVTEVVRP 397 (521)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~C~~~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~--~~~~~~c~~~ 397 (521)
. |+..+.+......++|..|...+.. .+.++..-+-.|.-.+..+. ..-|..|.+.
T Consensus 653 ~---------------------C~~~~~~~k~l~~~~lsyp~~~~id-~~~~~~~F~~iL~R~l~l~kn~~~~C~~C~k~ 710 (1118)
T KOG1275|consen 653 E---------------------CGDEKQKSKSLLRKVLSYPNVLLID-TLAKSNNFVEILKRSLSLFKNKQAWCETCTKP 710 (1118)
T ss_pred c---------------------ccchhhhhhhhhheeecCCCccchh-hcccccchHHHhhhhhhcccccccccccccCC
Confidence 7 8776666666666677777644321 11111100001111111111 1226667766
Q ss_pred eeeEEEEEEecCCCeeEEEEeeEEec--Cceeee--CCeeEeecCCccccccCCCC-------------CCCCCCCCCCc
Q 009986 398 HVARMRYRVTRLPKYMILHMRRFTKN--NFFVEK--NPTLVNFPVKNLELKDYIPL-------------PTPKENEKLRS 460 (521)
Q Consensus 398 ~~a~k~~~i~~lP~~LiihlkRF~~~--~~~~~K--~~~~V~FP~~~Ldl~~~~~~-------------~~~~~~~~~~~ 460 (521)
.....+..+..||.+|.|...-+... +|..+| .-..|-+|. .+-|..--.. +.+...++.-.
T Consensus 711 ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~-~~~~~~~k~~~~~v~~~s~~~~~~~~~~d~~~~~ 789 (1118)
T KOG1275|consen 711 EPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPE-WFHMIISKNKAQLVSTISDLDVSPLPDYDEPSAV 789 (1118)
T ss_pred CCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccch-heeEEEecccceeeeeeccccCCCCccccCCceE
Confidence 66566677999999999998876643 233333 345566663 3444322111 00111234458
Q ss_pred eEEEeEEEEEec-cCCCCeEEEEEEEC--------CCCcEEEEeCceeeeeCcccccC-----CCcEEEEE
Q 009986 461 KYDLIANIVHDG-KPEGGFYRVFVQRK--------SEELWYEMQDLHVSETLPQMVAL-----SETYMQIY 517 (521)
Q Consensus 461 ~Y~L~avI~H~G-~~~~GHY~a~vk~~--------~~~~W~~~nD~~V~~v~~~~v~~-----~~aYllfY 517 (521)
+|+|-|+|+|.| +-+.+|++++|+.. .+.+||.|||--|.++++++... .-+-||+|
T Consensus 790 vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 790 VYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred EEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 899999999999 56889999999852 34699999999999999988653 44778999
No 41
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=99.00 E-value=1.9e-10 Score=84.83 Aligned_cols=48 Identities=40% Similarity=0.639 Sum_probs=44.1
Q ss_pred ccccCCCCceEEecccCcccccCCCCCCcccccccCCccEEEEeCCCc
Q 009986 124 CSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEK 171 (521)
Q Consensus 124 Cs~~ls~~nl~~CL~CG~~~~G~~~~~ha~~H~~~~~H~v~v~l~t~~ 171 (521)
|+.|.+..++|+||+||.++||++..+|++.|+.+++|++++++.++.
T Consensus 2 C~~C~~~~~l~~CL~C~~~~c~~~~~~h~~~H~~~t~H~~~~~~~~~~ 49 (50)
T smart00290 2 CSVCGTIENLWLCLTCGQVGCGRYQLGHALEHFEETGHPLVVKLGTQR 49 (50)
T ss_pred cccCCCcCCeEEecCCCCcccCCCCCcHHHHHhhhhCCCEEEEccccc
Confidence 777777788999999999999998889999999999999999998865
No 42
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.60 E-value=1.6e-08 Score=103.52 Aligned_cols=62 Identities=26% Similarity=0.465 Sum_probs=57.1
Q ss_pred CcccccccCCCCceEEecccCcccccCCCCCCcccccccCCccEEEEeCCCceEecCCCCcc
Q 009986 120 FEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEI 181 (521)
Q Consensus 120 ~~k~Cs~~ls~~nl~~CL~CG~~~~G~~~~~ha~~H~~~~~H~v~v~l~t~~vyc~~~~~~v 181 (521)
..+.|..|....|||+||.||.+.|||...+||..|+.+++|..++.|+|.+||-|.-+.+|
T Consensus 227 e~~~c~~c~~~~~LwicliCg~vgcgrY~eghA~rHweet~H~yalel~tqrVWDYAGDnYV 288 (493)
T KOG0804|consen 227 ESSLCLACGCTEDLWICLICGNVGCGRYKEGHARRHWEETGHCYALELETQRVWDYAGDNYV 288 (493)
T ss_pred hhhhhhhhcccccEEEEEEccceecccccchhHHHHHHhhcceEEEeecceeeeecccchhh
Confidence 46778788888999999999999999999999999999999999999999999999977777
No 43
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.39 E-value=2.1e-06 Score=82.76 Aligned_cols=240 Identities=16% Similarity=0.207 Sum_probs=132.5
Q ss_pred ccCCCCchhhHHHHHHhCchhHHHHhcCcccccCCCChHHHHHHHHHHH---HHccCCCCC------cCChHHHH-----
Q 009986 195 NNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRK---IWHARNFKG------QVSPHEFL----- 260 (521)
Q Consensus 195 ~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~---l~s~~~~~~------~vsP~~ll----- 260 (521)
+|.-|-||+-++|-+|.|+..+++..-... ....++..+|..-..+ +.+.....+ ...|.+++
T Consensus 6 ~N~~aLCWLDciLsaLVh~~~Lk~~~~~~~---~~e~s~~~~L~~~Y~qa~~ll~~~q~~~~~~~~~~~~~~~~l~~ae~ 82 (275)
T PF15499_consen 6 KNSNALCWLDCILSALVHLESLKNAVTELC---SKEESVFWRLFTKYNQANKLLHTCQLDGVKDDDCKKVPSEILAKAET 82 (275)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHhhhc---cccccHHHHHHHHHHHHHHHHHhhhhcCCCCcccccCchHHHHHHHH
Confidence 688899999999999999999999886321 1123333333322211 111110000 11122111
Q ss_pred ------HHHHHhcccCC--CCCCcCCHHHHHHHHHHHHHHhhccCCCCCCccccccCcEEEEEEEecCCCCCCCCCCcCC
Q 009986 261 ------QAVMKASKKRF--RIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEK 332 (521)
Q Consensus 261 ------~~i~~~s~~~F--~~~~QqDA~EFl~~LLn~L~~~l~~~~~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~ 332 (521)
..|...-.|.. ..|.+.-|..-|-.||- ....+.++|.-.+.-...|..
T Consensus 83 ~Ln~vR~~iF~~LqPkL~C~LG~~ESPVFAlPLLLk-----------~d~~~E~lF~~sf~WeFeC~~------------ 139 (275)
T PF15499_consen 83 CLNEVRMEIFIQLQPKLRCKLGDMESPVFALPLLLK-----------LDPWIEKLFLYSFSWEFECSQ------------ 139 (275)
T ss_pred HHHHHHHHHHHHhCccCCCCCCCccCcHHHhHHHHh-----------cchHHHhHhheeeEEEEEccc------------
Confidence 11111111211 22444555544444432 234578899999999999998
Q ss_pred CCCCCCCCCCCcee-----eeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcccceeeccceeeeEEEEEEe
Q 009986 333 GSDGGDDHDNITTE-----TSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETVTEVVRPHVARMRYRVT 407 (521)
Q Consensus 333 ~~~~~~~~~C~~~s-----~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~~~~c~~~~~a~k~~~i~ 407 (521)
|+... .+...|..+.=+. .+ |+.-.-..|..|..+.. ++++.+.
T Consensus 140 ---------Cg~~~~~R~~K~L~TFtnv~pdw-----------------hP----LnA~h~~pCn~C~~ksQ-~rkMvle 188 (275)
T PF15499_consen 140 ---------CGHKYQNRCTKTLVTFTNVIPDW-----------------HP----LNAVHFGPCNSCNSKSQ-RRKMVLE 188 (275)
T ss_pred ---------cCChhhhhheeeecccCCCCCCC-----------------Cc----ccccccCCCcccCChHH-hHhhhhh
Confidence 77432 2222332221111 01 11111123455554432 4567799
Q ss_pred cCCCeeEEEEeeEEecCceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEEeEEEEEeccCCCCeEEEEEEECC
Q 009986 408 RLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKS 487 (521)
Q Consensus 408 ~lP~~LiihlkRF~~~~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~a~vk~~~ 487 (521)
++|+++++|+.- +.+.+.-...+|-.+ ...|++.+||-..-. --|+++++++.
T Consensus 189 kv~~vfmLHFVe-----GLP~ndl~~ysF~fe-------------------g~~Y~Vt~VIQY~~~--~~HFvtWi~~~- 241 (275)
T PF15499_consen 189 KVPPVFMLHFVE-----GLPHNDLQHYSFHFE-------------------GCLYQVTSVIQYQAN--LNHFVTWIRDS- 241 (275)
T ss_pred cCchhhhhhhhc-----cCCccCCCccceeec-------------------CeeEEEEEEEEEecc--CceeEEEEEcC-
Confidence 999999999861 111111112222211 345999999998763 57999999996
Q ss_pred CCcEEEEeCceeeee---CcccccCCCcEEEEEE
Q 009986 488 EELWYEMQDLHVSET---LPQMVALSETYMQIYE 518 (521)
Q Consensus 488 ~~~W~~~nD~~V~~v---~~~~v~~~~aYllfYe 518 (521)
+|.|.+|||.+=-.. ..-+|-.+|.=|.|||
T Consensus 242 dGsWLecDDLkgp~~~~h~~~~vPasEiHIV~WE 275 (275)
T PF15499_consen 242 DGSWLECDDLKGPCCWRHKRFEVPASEIHIVIWE 275 (275)
T ss_pred CCCeEeeccCCCcchhccCCCCCChhHcEEEEeC
Confidence 888999999874332 2334556778888885
No 44
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=98.09 E-value=4.3e-07 Score=91.58 Aligned_cols=169 Identities=21% Similarity=0.074 Sum_probs=113.9
Q ss_pred CccccccC-CCCcccccccccccccCCCCCCCCCCCCCCCCcCCCCCCCCchhhhcCCCC------CCCCccCCCCCC-C
Q 009986 1 MTKKRKNN-GSADEDRHVKSVKVVEQSSPSPPRLGFENPLLPLANTYDDDDEEEEYGGRG------DSGAKVGQNGRT-G 72 (521)
Q Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~ 72 (521)
|+++|... +.-......++.++...++++...++..+ +...|.++++++.+-....+. ..|+.+..+-.. .
T Consensus 1 m~~k~~~~~~~~~~yldtv~r~vldfd~ek~c~vslsn-LnvyAclvcg~y~qgr~~kS~A~~h~l~~ghhvf~nl~tel 79 (442)
T KOG2026|consen 1 MKVKKIKKQEPNYAYLETVVRRVLDFDFEKPCSVSLSN-LNVYACLVCGKYFQGRGEKSHAYTHSLEEGHHVFLNLSTEL 79 (442)
T ss_pred CccchhcccCcchHhhhhhhhhhccccCCCCCcccccc-cceeeeeeeCchhhCcCccccchhccccccccceeccccce
Confidence 66666643 33344666677778888888888888876 999999986655441111111 112211111111 1
Q ss_pred CCCCCCCCcchhhhhcccCCCCcccccccCC-CCCccccccc---cccCCCCcccccccCCCCceEEecccCcccccCCC
Q 009986 73 EDDDEDKDEDEDDLANGYGQGQRSRLVEVRR-DCPYLDTVNR---QVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQ 148 (521)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~c~~l~ti~r---~~l~~d~~k~Cs~~ls~~nl~~CL~CG~~~~G~~~ 148 (521)
.....|+.+++++++. +..+....+..++ .||+||++|| .+|+++..-.|.|.|.|.+.+.|..|+++..++-.
T Consensus 80 kfyvlpe~~ei~d~s~--~~ikhslkptftr~~cp~lD~~nr~~~raLd~~tYLpG~VGLnNik~~dy~n~vl~~ls~v~ 157 (442)
T KOG2026|consen 80 KFYVLPENYEIDDPSL--GDIKHSLKPTFTKTDCPNLDKVNRKLSRALDGSTYLPGFVGLNNIKANDYANAVLQALSHVV 157 (442)
T ss_pred eEEecchhccccCchh--hhhhccccceeehhhcccccccchhhhhhhcCCcceeeeeccchhhhHHHHHHHHHHHhccc
Confidence 1222333344456666 6666666666676 9999999999 78999999999999999999999999999999988
Q ss_pred CCCcccccccCCccEEEEeCCCceEecC
Q 009986 149 KSHAYTHSLEAGHHVYINLRTEKVYCLP 176 (521)
Q Consensus 149 ~~ha~~H~~~~~H~v~v~l~t~~vyc~~ 176 (521)
..+++.|..+. +.+..+..|+|++
T Consensus 158 PlRnyFl~~~n----~~d~~~~lv~rl~ 181 (442)
T KOG2026|consen 158 PLRNYFLLEEN----YFDNLTELVQRLG 181 (442)
T ss_pred hhhhhhccccc----ccchhHHHHHHHH
Confidence 88888887754 4445555555554
No 45
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0023 Score=70.46 Aligned_cols=103 Identities=16% Similarity=0.110 Sum_probs=60.3
Q ss_pred CccCCCCchhhHHHHHHhCchhHHHHhcCccc-----ccC------CCC---hHHHHHHHHHHHHH--ccCCCCCcCChH
Q 009986 194 LNNIKETDFVNVTIQSLMRVTPLRNFFLIPEN-----YRH------CKS---PLVHRFGDLTRKIW--HARNFKGQVSPH 257 (521)
Q Consensus 194 L~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~-----~~~------~~~---~l~~~l~~L~~~l~--s~~~~~~~vsP~ 257 (521)
|.|.||+||.|++||+|..+|+|+-.+..... ... ... .-.+.+........ +...-.-.++-+
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 99999999999999999999999976653211 000 011 11111111111111 111101123334
Q ss_pred HHHHHHHHh--cccCCCCCCcCCHHHHHHHHHHHHHHhhcc
Q 009986 258 EFLQAVMKA--SKKRFRIGVQSNPVEFMSWLLNTLHSDLRN 296 (521)
Q Consensus 258 ~ll~~i~~~--s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~ 296 (521)
.+.+..... ....|....|+||++|+.-|+-.+...+.-
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~~ 154 (587)
T KOG1864|consen 114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMGV 154 (587)
T ss_pred HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhccc
Confidence 444444433 124588899999999999998888876543
No 46
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=96.67 E-value=0.048 Score=55.68 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=42.5
Q ss_pred CCccC---CCCchhhHHHHHHhCchh-HHHHhcCcccccCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhcc
Q 009986 193 GLNNI---KETDFVNVTIQSLMRVTP-LRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASK 268 (521)
Q Consensus 193 GL~Nl---GNTCYmNsVLQ~L~~ip~-fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s~ 268 (521)
|+.=+ -|+||+||++-+|=++.+ | ..+ .+.++..++..+ .|..|...+-..
T Consensus 101 g~~~Lkq~dNNCwVna~~~~LQ~~~~~f-------------~~~---~l~~aw~~f~~G-------~~~~fVa~~Ya~-- 155 (320)
T PF08715_consen 101 GFRVLKQSDNNCWVNAACLQLQALKIKF-------------KSP---GLDEAWNEFKAG-------DPAPFVAWCYAS-- 155 (320)
T ss_dssp TEEEE---TTTHHHHHHHHHHTTST--B-------------SSH---HHHHHHHHHHTT---------HHHHHHHHHH--
T ss_pred CEEEEEecCCCcHHHHHHHHHHhcCCcc-------------CCH---HHHHHHHHHhCC-------ChHHHHHHHHHH--
Confidence 54444 489999999987765432 1 111 222333344333 466777777664
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHHH
Q 009986 269 KRFRIGVQSNPVEFMSWLLNTLHS 292 (521)
Q Consensus 269 ~~F~~~~QqDA~EFl~~LLn~L~~ 292 (521)
..+..|+-.||+++|..||+.++.
T Consensus 156 ~~~~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 156 TNAKKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp TT--TTS---HHHHHHHHHTTB-T
T ss_pred cCCCCCCCcCHHHHHHHHHHhccc
Confidence 456788999999999999987764
No 47
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=92.17 E-value=0.023 Score=63.41 Aligned_cols=87 Identities=16% Similarity=0.257 Sum_probs=53.6
Q ss_pred EEEecCCCeeEEEEeeEEecCceeeeC--CeeEeecCCccccccCCCCCCCCCCCCCCceEEEeEEEEEeccCCCCeEEE
Q 009986 404 YRVTRLPKYMILHMRRFTKNNFFVEKN--PTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRV 481 (521)
Q Consensus 404 ~~i~~lP~~LiihlkRF~~~~~~~~K~--~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~a 481 (521)
..|.+.|+|.+|.+.. +.+. .+|- .|...+-. ++|++-... .+....++|+|+++|.-... .++|.|
T Consensus 676 h~is~~P~vftIvlew-Ek~E--Te~eI~~T~~aL~t-eidis~~y~-----~g~ep~t~yrLVSmv~~~e~--~~~~~C 744 (806)
T KOG1887|consen 676 HILSPCPPVFTIVLEW-EKSE--TEKEISETTKALAT-EIDISRLYR-----EGLEPNTKYRLVSMVGNHEE--GEEYIC 744 (806)
T ss_pred hhcCCCCCeeEeeeeh-hccc--chHHHHHHHHHHHh-hhhHHHHhh-----hccCcCceeEEEEEeeeccc--cceEEE
Confidence 4588999999996652 2221 1111 11122222 356554432 12223577999999987632 599999
Q ss_pred EEEECCCCcEE--EEeCceeeeeC
Q 009986 482 FVQRKSEELWY--EMQDLHVSETL 503 (521)
Q Consensus 482 ~vk~~~~~~W~--~~nD~~V~~v~ 503 (521)
+.+. .+.|+ ..+|..+..+.
T Consensus 745 ~Aye--~Nrwvs~r~~~~~~e~iG 766 (806)
T KOG1887|consen 745 FAYE--PNRWVSLRHEDSQGEVVG 766 (806)
T ss_pred eecc--CCcchhhHHHHHHhhhcc
Confidence 9998 67787 78887766654
No 48
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=91.04 E-value=0.18 Score=46.78 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=23.1
Q ss_pred CCCeEEEEEEECCCCcEEEEeCceeeeeCccc
Q 009986 475 EGGFYRVFVQRKSEELWYEMQDLHVSETLPQM 506 (521)
Q Consensus 475 ~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~ 506 (521)
+.||++.+++. .+.||.+||..+....+..
T Consensus 137 g~~Havfa~~t--s~gWy~iDDe~~y~~tPdp 166 (193)
T PF05408_consen 137 GQEHAVFACVT--SDGWYAIDDEDFYPWTPDP 166 (193)
T ss_dssp STTEEEEEEEE--TTCEEEEETTEEEE----G
T ss_pred CCcceEEEEEe--eCcEEEecCCeeeeCCCCh
Confidence 36999999998 7899999999999877643
No 49
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=89.44 E-value=0.15 Score=46.15 Aligned_cols=50 Identities=28% Similarity=0.520 Sum_probs=29.3
Q ss_pred CCceEEecccCcccc-cCC--CCCCcccccccCCcc-EEEEeCC----CceEecCCCC
Q 009986 130 NLNVYACLVCGKYYQ-GRG--QKSHAYTHSLEAGHH-VYINLRT----EKVYCLPDGY 179 (521)
Q Consensus 130 ~~nl~~CL~CG~~~~-G~~--~~~ha~~H~~~~~H~-v~v~l~t----~~vyc~~~~~ 179 (521)
..-|-.|++|+|.|| |+| ..||...|...++|. |.+.-.+ -.+.||.|+.
T Consensus 11 p~~vv~C~~c~kWFCNg~~~~s~SHIv~HLv~srh~ev~LH~~s~lgdt~leCy~Cg~ 68 (152)
T PF09416_consen 11 PSCVVKCNTCNKWFCNGRGNTSGSHIVNHLVRSRHKEVSLHPDSPLGDTVLECYNCGS 68 (152)
T ss_dssp CCCEEEETTTTEEEES--TTSSS-HHHHHHHHHT---EEE-TTSTT-S-B---TTT--
T ss_pred cccEeEcCCCCcEeecCCCCCcccHHHHHHHHccCCceeeCCCCCCCCcEEEEEecCC
Confidence 367999999999999 444 378999998888775 4443332 4678999874
No 50
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=82.23 E-value=2.3 Score=39.62 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=20.2
Q ss_pred hhcCCccCCCCchhhHHHHHHhC--chhHHHHhc
Q 009986 190 RHVGLNNIKETDFVNVTIQSLMR--VTPLRNFFL 221 (521)
Q Consensus 190 ~~~GL~NlGNTCYmNsVLQ~L~~--ip~fr~~~l 221 (521)
.++|+.|.+||||+||++|.+-. .|-|-.++.
T Consensus 32 eft~~PN~~dnCWlNaL~QL~~~~d~~~Fd~~Y~ 65 (193)
T PF05408_consen 32 EFTGLPNNHDNCWLNALLQLFRYVDEPFFDWYYD 65 (193)
T ss_dssp EEE----SSSTHHHHHHHHHHHHHT-GTTHHHHT
T ss_pred EEecCCCCCCChHHHHHHHHHHHcCcccchhhcC
Confidence 45699999999999999999854 444555544
No 51
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=73.31 E-value=4.5 Score=43.45 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=26.3
Q ss_pred EEEEecCCCeeEEEEeeEEecCceeeeCCeeEeecC
Q 009986 403 RYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPV 438 (521)
Q Consensus 403 ~~~i~~lP~~LiihlkRF~~~~~~~~K~~~~V~FP~ 438 (521)
..+++..|-.+||++-||..+.....++-..+..|+
T Consensus 515 ~ik~~e~pSc~iiqmprfgk~~km~~~i~pS~~l~V 550 (724)
T KOG3556|consen 515 SIKSTETPSCQIIQMPRFGKSQKMPAAIGPSISLPV 550 (724)
T ss_pred ccccccCcchhheeccccCcccccchhcCCceEeec
Confidence 356788999999999999877545556655555554
No 52
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=48.91 E-value=9.4 Score=25.49 Aligned_cols=14 Identities=43% Similarity=0.999 Sum_probs=11.3
Q ss_pred eEEecccCcccccC
Q 009986 133 VYACLVCGKYYQGR 146 (521)
Q Consensus 133 l~~CL~CG~~~~G~ 146 (521)
.|.|.+||..+.|.
T Consensus 2 ~~~C~~CG~i~~g~ 15 (34)
T cd00729 2 VWVCPVCGYIHEGE 15 (34)
T ss_pred eEECCCCCCEeECC
Confidence 69999999776654
No 53
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=48.14 E-value=5.9 Score=35.39 Aligned_cols=25 Identities=36% Similarity=0.800 Sum_probs=20.6
Q ss_pred CcccccccCCCCceEEecccCccccc
Q 009986 120 FEKFCSVSLSNLNVYACLVCGKYYQG 145 (521)
Q Consensus 120 ~~k~Cs~~ls~~nl~~CL~CG~~~~G 145 (521)
.-++|+||. ....|.|..||.-||.
T Consensus 117 ~r~fCaVCG-~~S~ysC~~CG~kyCs 141 (156)
T KOG3362|consen 117 LRKFCAVCG-YDSKYSCVNCGTKYCS 141 (156)
T ss_pred cchhhhhcC-CCchhHHHhcCCceee
Confidence 347899998 5899999999977774
No 54
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=43.35 E-value=12 Score=41.02 Aligned_cols=145 Identities=14% Similarity=0.043 Sum_probs=72.5
Q ss_pred cccccccCCCCceEEecccCcccccCCCCCCcccccccCCccEEEEeCCCceEecCCCCcccCCChhhhhhcCCccCCCC
Q 009986 121 EKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDIRHVGLNNIKET 200 (521)
Q Consensus 121 ~k~Cs~~ls~~nl~~CL~CG~~~~G~~~~~ha~~H~~~~~H~v~v~l~t~~vyc~~~~~~v~d~~l~di~~~GL~NlGNT 200 (521)
-+.+++......-+.|.+|+-+-++.. +. |..|+..+.-..-......|+.+.+|+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (492)
T KOG1867|consen 31 PKRKDARILPLKTINCGTCGVLQIRLA-----------------VP-------CLICDSLGCLSNSHKLEHSGNKKHNNT 86 (492)
T ss_pred ccccchhhcccccceeEEechhhhhhc-----------------cc-------ceechhccccccccccccccccccccc
Confidence 356677777788888999984433221 11 333322221111111123499999999
Q ss_pred chhhHHHHHHhCchhHHHHhcCcc---cccCCCChHHHHHHHHHHHHHccCCC---CCcCChHHHHHHHHHhcccCCCCC
Q 009986 201 DFVNVTIQSLMRVTPLRNFFLIPE---NYRHCKSPLVHRFGDLTRKIWHARNF---KGQVSPHEFLQAVMKASKKRFRIG 274 (521)
Q Consensus 201 CYmNsVLQ~L~~ip~fr~~~l~~~---~~~~~~~~l~~~l~~L~~~l~s~~~~---~~~vsP~~ll~~i~~~s~~~F~~~ 274 (521)
|+||+.+|.++.++.+.-..-... .......++...+..+....|..... .....|. .....+.. .-.+++.
T Consensus 87 ~~~~~g~~~~~~c~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~-~~~l~g~ 164 (492)
T KOG1867|consen 87 IDVNNGLLYCFACPDFIYDAELLKLADIKKYKEQPFHQLDSTLLTHLAEATVCQQTLLKENPK-DRLVLSTT-ALGLRGL 164 (492)
T ss_pred ceeehhhheeccCCcEeeccchhhHHHHHhhhccchhhccchhhhhhhhhhccchhcccCCcc-ccccccee-eeccccc
Confidence 999999999999885421110000 00001112222222222222222100 0011111 01111111 2345667
Q ss_pred CcCCHHHHHHHHHHHHH
Q 009986 275 VQSNPVEFMSWLLNTLH 291 (521)
Q Consensus 275 ~QqDA~EFl~~LLn~L~ 291 (521)
.-.++.+||..+|..|-
T Consensus 165 ~n~g~tcfmn~ilqsl~ 181 (492)
T KOG1867|consen 165 RNLGSTCFMNVILQSLL 181 (492)
T ss_pred ccccHHHHHHHHHHHhh
Confidence 78899999999999886
No 55
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=41.55 E-value=15 Score=23.46 Aligned_cols=19 Identities=37% Similarity=0.927 Sum_probs=14.2
Q ss_pred EEecccCcccccCCCCCCc
Q 009986 134 YACLVCGKYYQGRGQKSHA 152 (521)
Q Consensus 134 ~~CL~CG~~~~G~~~~~ha 152 (521)
+-|+.||+.|.|..-.+|.
T Consensus 1 ~sCiDC~~~F~~~~y~~Ht 19 (28)
T PF08790_consen 1 FSCIDCSKDFDGDSYKSHT 19 (28)
T ss_dssp EEETTTTEEEEGGGTTT--
T ss_pred CeeecCCCCcCcCCcCCCC
Confidence 4699999999887766664
No 56
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=39.94 E-value=40 Score=30.95 Aligned_cols=31 Identities=10% Similarity=0.148 Sum_probs=25.1
Q ss_pred EeEEEEEeccCCCCeEEEEEEECCCCcEEEEeCceee
Q 009986 464 LIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVS 500 (521)
Q Consensus 464 L~avI~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~ 500 (521)
..|+|++.+ .||+|.-|- +|.||-+|=..-.
T Consensus 99 ~~gfI~N~~----~HWf~iRki--~~~wyNLDS~l~~ 129 (157)
T PF02099_consen 99 EFGFICNLS----RHWFAIRKI--GGQWYNLDSKLKE 129 (157)
T ss_dssp SSEEEEECT----TEEEEEEEE--TTEEEEECTTTSS
T ss_pred ceEEEeccC----cceEEEEee--CCeeEeccCCCCC
Confidence 468889854 999999888 8999999876544
No 57
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=39.72 E-value=15 Score=24.25 Aligned_cols=14 Identities=50% Similarity=1.184 Sum_probs=10.9
Q ss_pred eEEecccCcccccC
Q 009986 133 VYACLVCGKYYQGR 146 (521)
Q Consensus 133 l~~CL~CG~~~~G~ 146 (521)
.|.|.+||..+.|.
T Consensus 1 ~~~C~~CGy~y~~~ 14 (33)
T cd00350 1 KYVCPVCGYIYDGE 14 (33)
T ss_pred CEECCCCCCEECCC
Confidence 49999999776654
No 58
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.01 E-value=20 Score=40.13 Aligned_cols=11 Identities=0% Similarity=0.081 Sum_probs=5.8
Q ss_pred cCCccEEEEeC
Q 009986 158 EAGHHVYINLR 168 (521)
Q Consensus 158 ~~~H~v~v~l~ 168 (521)
..+-++.-.+.
T Consensus 444 ~DKkplVRsIT 454 (885)
T KOG2023|consen 444 DDKKPLVRSIT 454 (885)
T ss_pred ccCccceeeee
Confidence 44556555554
No 59
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=34.91 E-value=21 Score=39.97 Aligned_cols=50 Identities=28% Similarity=0.493 Sum_probs=34.8
Q ss_pred CceEEecccCcccc-cCCC--CCCcccccccCCccE-EEEeC----CCceEecCCCCc
Q 009986 131 LNVYACLVCGKYYQ-GRGQ--KSHAYTHSLEAGHHV-YINLR----TEKVYCLPDGYE 180 (521)
Q Consensus 131 ~nl~~CL~CG~~~~-G~~~--~~ha~~H~~~~~H~v-~v~l~----t~~vyc~~~~~~ 180 (521)
.++--|.+|||-|| ||++ .+|...|...+.|.. .+.-. ...+-||.|+..
T Consensus 72 ~~v~kc~~c~Kwfcn~r~gtsgshIv~hlvra~hk~v~lh~ds~lget~lecyncg~~ 129 (935)
T KOG1802|consen 72 ACVIKCNTCGKWFCNSRGGTSGSHIVNHLVRAKHKEVSLHKDSPLGETVLECYNCGSR 129 (935)
T ss_pred hheeeccccCceeecCCCCCchhHHHHHHHHhhhheeEeccCCCCCcceEEeeccCcc
Confidence 47888999999998 3443 578888888877743 33222 245789998753
No 60
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=32.81 E-value=25 Score=36.79 Aligned_cols=111 Identities=16% Similarity=0.146 Sum_probs=66.8
Q ss_pred CChhhhhhcCCccCCCCchhhHHHHHHhCchhHHHHhcCcccc--c----CCCChHHHHHHHHHHHHHcc-CC-------
Q 009986 184 PSLEDIRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY--R----HCKSPLVHRFGDLTRKIWHA-RN------- 249 (521)
Q Consensus 184 ~~l~di~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~--~----~~~~~l~~~l~~L~~~l~s~-~~------- 249 (521)
+.-++....|+.|.||-|..++..|.+.+..++...+-..... . -+..++..-|+.+++..... ++
T Consensus 171 ~~n~e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~nkeS~tlq 250 (420)
T KOG1871|consen 171 PPNDEFTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPSNKESATLQ 250 (420)
T ss_pred CCcccccccccccccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccccccccccC
Confidence 3344555679999999999999999999998887765432211 1 12234555555544432221 11
Q ss_pred -C------------------CCcCChHHHHHHHHHhcccCCCCCCcCCHHHHHHHHHHHHHHhh
Q 009986 250 -F------------------KGQVSPHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDL 294 (521)
Q Consensus 250 -~------------------~~~vsP~~ll~~i~~~s~~~F~~~~QqDA~EFl~~LLn~L~~~l 294 (521)
| -...+|.++++.....+...-....|-++.+|...|+..|+..+
T Consensus 251 PF~tlqldiq~~~i~sv~~ales~~~re~lp~~st~s~~eV~~s~q~~leklp~vlilhlkrF~ 314 (420)
T KOG1871|consen 251 PFFTLQLDIQSEKIHSVQDALESLVARESLPGYSTKSGQEVEASSQTTLEKLPPVLILHLKRFV 314 (420)
T ss_pred ccceeeeeeeccccCCHHHHhhccChhhcccceecCCCCeechhhhhhHhhcchhhhhhhhHHH
Confidence 0 01233344443333222233344778999999999999999864
No 61
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=31.13 E-value=46 Score=39.73 Aligned_cols=9 Identities=11% Similarity=0.183 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 009986 282 FMSWLLNTL 290 (521)
Q Consensus 282 Fl~~LLn~L 290 (521)
||.+.+..|
T Consensus 2114 aLhY~hSLl 2122 (3015)
T KOG0943|consen 2114 ALHYAHSLL 2122 (3015)
T ss_pred HHHHHHHHH
Confidence 444443333
No 62
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=29.30 E-value=1.6e+02 Score=31.94 Aligned_cols=57 Identities=25% Similarity=0.413 Sum_probs=31.3
Q ss_pred cccccCCC-----CceEEecccC-cccccCCCCCCcccccccCCccEEEEeCCCceEecCCCCcccCC
Q 009986 123 FCSVSLSN-----LNVYACLVCG-KYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDP 184 (521)
Q Consensus 123 ~Cs~~ls~-----~nl~~CL~CG-~~~~G~~~~~ha~~H~~~~~H~v~v~l~t~~vyc~~~~~~v~d~ 184 (521)
.|.|||.. ..+.-|-.|| .+.-||.+-.-. -++..+ .-...|.--||-+|-+-|.-|
T Consensus 121 iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn--~si~s~---~s~~stepWfCeaC~~Gvs~P 183 (707)
T KOG0957|consen 121 ICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDN--VSIPSG---SSDCSTEPWFCEACLYGVSLP 183 (707)
T ss_pred EEEEeecCccccccceeeccccCceecccccccccc--cccCCC---CccCCCCchhhhhHhcCCCCC
Confidence 67777642 3467788888 445555432210 000000 002235677999999988754
No 63
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=28.68 E-value=19 Score=30.02 Aligned_cols=8 Identities=38% Similarity=0.683 Sum_probs=4.1
Q ss_pred cccccccc
Q 009986 107 YLDTVNRQ 114 (521)
Q Consensus 107 ~l~ti~r~ 114 (521)
|+.++-|.
T Consensus 52 ~~~~v~rY 59 (101)
T PF09026_consen 52 YFTMVKRY 59 (101)
T ss_dssp HHHHHHHH
T ss_pred hcchHhhh
Confidence 55555544
No 64
>PF03117 Herpes_UL49_1: UL49 family; InterPro: IPR004339 UL49 proteins are present in the viral tegument at the surface of the nucleocapsid []. Many of the nonconserved tegument proteins of alpha-herpes viruses play important roles during different steps of the viral replication cycle, such as the shutoff of host cell functions by the vhs protein encoded by UL41 and the transcriptional activation of viral immediate-early genes by the UL48 gene product, VP16. UL49 of Human herpesvirus 1 (HHV-1) has been shown to directly interact with VP16. The UL49 gene products of HHV-1 and Bovine herpesvirus 1 exhibit virus-independent intercellular trafficking of unknown biological function but are dispensable for productive viral replication. Envelope glycoprotein M (gM) and the complex formed by glycoproteins E (gE) and I (gI) are involved in the secondary envelopment of Suid herpesvirus 1 (Pseudorabies virus, PrV) particles in the cytoplasm of infected cells. In the absence of the gE-gI complex and gM, envelopment is blocked and capsids surrounded by tegument proteins accumulate in the cytoplasm. The cytoplasmic domains of gE and gM specifically interact with the C-terminal part of the UL49 gene product of PrV suggesting a role for the protein in secondary envelopment during herpesvirus virion maturation [].; GO: 0016032 viral reproduction, 0019033 viral tegument
Probab=26.24 E-value=65 Score=31.65 Aligned_cols=48 Identities=21% Similarity=0.445 Sum_probs=30.2
Q ss_pred CceEEecccCcccc---cCCC--C------CCcccccccCCccEEEEeCCCceEecCCCCc
Q 009986 131 LNVYACLVCGKYYQ---GRGQ--K------SHAYTHSLEAGHHVYINLRTEKVYCLPDGYE 180 (521)
Q Consensus 131 ~nl~~CL~CG~~~~---G~~~--~------~ha~~H~~~~~H~v~v~l~t~~vyc~~~~~~ 180 (521)
.-.-.|..|| +| |++. + +|.+---.+..-.+-+...|+.+||--|+..
T Consensus 103 ~~aVvC~~CG--hCLN~GK~K~~~~~~F~pts~FY~RDqkEK~v~~c~~tgriyCS~CGS~ 161 (245)
T PF03117_consen 103 YRAVVCMECG--HCLNFGKGKLKCGQNFPPTSMFYYRDQKEKQVIYCATTGRIYCSLCGSQ 161 (245)
T ss_pred eEEEEeccCC--chhhccchhhccccCcCCcceeEeccccceeEEEeccCCCEEEccCCCC
Confidence 4566799999 44 5543 1 2221111233456778888999999999854
No 65
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=25.43 E-value=72 Score=18.00 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=10.3
Q ss_pred EEEECCCCcEEEEeCc
Q 009986 482 FVQRKSEELWYEMQDL 497 (521)
Q Consensus 482 ~vk~~~~~~W~~~nD~ 497 (521)
+++. ++.||.|++.
T Consensus 3 W~~~--~~~wYy~~~~ 16 (19)
T PF01473_consen 3 WVQD--NGNWYYFDSD 16 (19)
T ss_dssp EEEE--TTEEEEETTT
T ss_pred CEEE--CCEEEEeCCC
Confidence 4555 7899999764
No 66
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=22.01 E-value=38 Score=21.95 Aligned_cols=23 Identities=39% Similarity=0.735 Sum_probs=16.2
Q ss_pred ccccccCCCCceEEecccCccccc
Q 009986 122 KFCSVSLSNLNVYACLVCGKYYQG 145 (521)
Q Consensus 122 k~Cs~~ls~~nl~~CL~CG~~~~G 145 (521)
+.|+++.. ...|.|..||..+|.
T Consensus 3 ~~C~vC~~-~~kY~Cp~C~~~~CS 25 (30)
T PF04438_consen 3 KLCSVCGN-PAKYRCPRCGARYCS 25 (30)
T ss_dssp EEETSSSS-EESEE-TTT--EESS
T ss_pred CCCccCcC-CCEEECCCcCCceeC
Confidence 57888877 789999999987764
No 67
>PHA00616 hypothetical protein
Probab=20.59 E-value=28 Score=24.84 Aligned_cols=23 Identities=26% Similarity=0.702 Sum_probs=14.2
Q ss_pred EEecccCcccccCCC-CCCccccc
Q 009986 134 YACLVCGKYYQGRGQ-KSHAYTHS 156 (521)
Q Consensus 134 ~~CL~CG~~~~G~~~-~~ha~~H~ 156 (521)
|.|+.||+.|.-... ..|...|.
T Consensus 2 YqC~~CG~~F~~~s~l~~H~r~~h 25 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEHLLSVH 25 (44)
T ss_pred CccchhhHHHhhHHHHHHHHHHhc
Confidence 679999988765432 34444443
Done!