Query 009986
Match_columns 521
No_of_seqs 325 out of 1887
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 17:22:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009986.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009986hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mhs_A Ubiquitin carboxyl-term 100.0 1E-74 3.5E-79 623.1 27.1 359 123-521 50-474 (476)
2 3ihp_A Ubiquitin carboxyl-term 100.0 6.9E-73 2.4E-77 642.8 35.6 389 102-521 193-853 (854)
3 2y6e_A Ubiquitin carboxyl-term 100.0 1.2E-62 4.2E-67 511.8 31.8 302 191-521 8-359 (367)
4 2gfo_A Ubiquitin carboxyl-term 100.0 1.3E-61 4.4E-66 509.5 29.9 290 190-520 61-395 (396)
5 3nhe_A Ubiquitin carboxyl-term 100.0 5.8E-61 2E-65 493.8 29.7 293 190-521 8-343 (348)
6 3i3t_A Ubiquitin carboxyl-term 100.0 1.7E-60 5.8E-65 491.6 26.2 293 190-521 2-351 (355)
7 2ayn_A Ubiquitin carboxyl-term 100.0 2.2E-58 7.4E-63 485.3 21.5 291 190-520 13-393 (404)
8 1nb8_A Ubiquitin carboxyl-term 100.0 2.4E-57 8.1E-62 470.0 26.5 284 190-520 5-314 (353)
9 1vjv_A Ubiquitin carboxyl-term 100.0 2.2E-57 7.4E-62 480.0 24.9 288 190-521 23-414 (415)
10 2f1z_A Ubiquitin carboxyl-term 100.0 3.4E-54 1.1E-58 468.5 25.4 285 189-520 173-483 (522)
11 2vhf_A Ubiquitin carboxyl-term 99.9 1.6E-27 5.5E-32 241.0 9.5 219 191-496 9-308 (374)
12 3c5k_A HD6, histone deacetylas 99.9 5.1E-23 1.7E-27 174.9 5.3 91 102-192 4-95 (109)
13 2uzg_A Ubiquitin carboxyl-term 99.8 1.7E-21 6E-26 162.5 0.8 87 102-188 3-96 (97)
14 2g45_A Ubiquitin carboxyl-term 99.8 4.8E-20 1.6E-24 161.0 4.4 89 102-191 12-115 (129)
15 2ida_A Hypothetical protein; z 99.6 3.8E-16 1.3E-20 130.0 3.4 80 103-185 3-89 (102)
16 2i50_A Ubiquitin carboxyl-term 99.5 2.7E-15 9.1E-20 130.8 2.6 85 102-186 4-111 (126)
17 3mp2_A Non-structural protein 96.7 0.0089 3E-07 55.8 10.4 63 197-288 19-81 (211)
18 2fe8_A PP1AB, ORF1AB, replicas 96.2 0.062 2.1E-06 53.3 13.4 37 465-504 260-296 (315)
19 2xzl_A ATP-dependent helicase 76.4 0.98 3.4E-05 50.9 2.2 57 122-179 15-79 (802)
20 1qmy_A Protease, leader protea 68.2 2.3 7.8E-05 36.7 2.1 22 191-212 13-34 (167)
21 2wjy_A Regulator of nonsense t 64.7 2.3 7.8E-05 47.8 1.8 49 131-179 18-74 (800)
22 3ihp_A Ubiquitin carboxyl-term 57.3 4.9 0.00017 45.4 2.9 37 128-168 57-93 (854)
23 3by4_A OTU1, ubiquitin thioest 34.5 8.3 0.00028 35.9 0.0 29 133-164 180-208 (212)
24 2lvu_A Zinc finger and BTB dom 36.9 10 0.00036 21.0 0.0 14 133-146 2-15 (26)
25 4ayb_P DNA-directed RNA polyme 30.0 11 0.00039 26.0 0.1 13 132-144 2-14 (48)
26 3o65_A Putative ataxin-3-like 25.3 55 0.0019 29.7 3.8 31 464-500 110-140 (191)
27 3c5t_B Exendin-4, exenatide; l 25.2 27 0.00093 22.0 1.2 13 278-290 10-22 (31)
28 2lvt_A Zinc finger and BTB dom 31.1 15 0.00052 20.9 0.0 23 133-155 2-25 (29)
29 1wg2_A Zinc finger (AN1-like) 25.0 41 0.0014 24.9 2.3 14 133-147 29-42 (64)
30 2lvr_A Zinc finger and BTB dom 29.7 16 0.00056 20.7 0.0 15 133-147 3-17 (30)
31 2ww6_A Fibritin, T4 fibritin; 23.5 37 0.0012 20.5 1.4 14 481-496 12-25 (27)
32 1wfh_A Zinc finger (AN1-like) 22.4 49 0.0017 24.5 2.3 14 133-147 29-42 (64)
33 1fv5_A First zinc finger of U- 22.3 31 0.0011 22.1 1.1 17 128-144 3-19 (36)
34 6rxn_A Rubredoxin; electron tr 20.9 33 0.0011 23.7 1.0 13 132-144 3-15 (46)
No 1
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=1e-74 Score=623.05 Aligned_cols=359 Identities=22% Similarity=0.346 Sum_probs=302.9
Q ss_pred cccccCCC--CceEEecccCcccccCCCCCCcccccccCCccEEEEeCCCceEecCCCCcccCCChhhh-----------
Q 009986 123 FCSVSLSN--LNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEINDPSLEDI----------- 189 (521)
Q Consensus 123 ~Cs~~ls~--~nl~~CL~CG~~~~G~~~~~ha~~H~~~~~H~v~v~l~t~~vyc~~~~~~v~d~~l~di----------- 189 (521)
.|+.|... .|+|+||+|| ++|||+++||+.|+.+++|+++|++.++.||||+|+++|.|+.|...
T Consensus 50 ~C~~c~~~~~~~~~~cl~cg--~~~c~~~~h~~~H~~~~~h~~~~~~~~~~~~c~~~~~~v~d~~l~~~~~~~~~~~~~~ 127 (476)
T 3mhs_A 50 KCGTCHEINSGATFMCLQCG--FCGCWNHSHFLSHSKQIGHIFGINSNNGLLFCFKCEDYIGNIDLINDAILAKYWDDVC 127 (476)
T ss_dssp BCTTTCCBCSSSEEEESSSS--CEEETTTTHHHHHHHHHCCCEEEETTTCCEEETTTTEEECSCHHHHTGGGGGGHHHHH
T ss_pred CcccccCCCCCCceEeCCCC--CCccCCchHHHHHhcccCCcEEEECCCCcEEeCCCCCCcccHHHHHHHHhhhccchhh
Confidence 38777654 7999999999 77777899999999999999999999999999999999999986431
Q ss_pred ------------hhcCCccCCCCchhhHHHHHHhCchhHHHHhcCccc-----ccCCCChHHHHHHHHHHHHHccCCC--
Q 009986 190 ------------RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPEN-----YRHCKSPLVHRFGDLTRKIWHARNF-- 250 (521)
Q Consensus 190 ------------~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~-----~~~~~~~l~~~l~~L~~~l~s~~~~-- 250 (521)
.++||.|+|||||||||||+|+|+|+|+++|+...+ ......++.++|..+++++|+....
T Consensus 128 ~~~~~~~~~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~ 207 (476)
T 3mhs_A 128 TKTMVPSMERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQ 207 (476)
T ss_dssp HHEECCCGGGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC--
T ss_pred hcccCCCccCCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhcccccc
Confidence 124999999999999999999999999999985432 1233567999999999999986532
Q ss_pred -----CCcCChHHHHH---HHHHhcccCCCCCCcCCHHHHHHHHHHHHHHhhccCC------------CCCCccccccCc
Q 009986 251 -----KGQVSPHEFLQ---AVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK------------KNTSIIYECFQG 310 (521)
Q Consensus 251 -----~~~vsP~~ll~---~i~~~s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~------------~~~sii~~~F~g 310 (521)
...+.|..++. .++.. ++.|.+++||||+|||.+||+.||+++.... ...++|+++|+|
T Consensus 208 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G 286 (476)
T 3mhs_A 208 ASSSSTSTNRQTGFIYLLTCAWKI-NQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEG 286 (476)
T ss_dssp ------CCCSCHHHHHHHHHHHHH-CGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCE
T ss_pred cccccccccCcchHHHHHHHHHHh-ccccCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecce
Confidence 12456666555 44566 7999999999999999999999999875321 246789999999
Q ss_pred EEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCcee-eeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhccc
Q 009986 311 ELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTE-TSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGE 389 (521)
Q Consensus 311 ~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s-~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~ 389 (521)
+++++++|.. |+..+ ++.++|++|+|+||.. .+|++||+.|+..
T Consensus 287 ~l~~~~~C~~---------------------C~~~s~~~~e~f~~LsL~i~~~--------------~sl~~~L~~~~~~ 331 (476)
T 3mhs_A 287 SLESSIVCPG---------------------CQNNSKTTIDPFLDLSLDIKDK--------------KKLYECLDSFHKK 331 (476)
T ss_dssp EEEEEEECTT---------------------TCCCCEEEEEEESCEEECCTTC--------------CBHHHHHHHHHCC
T ss_pred EEEEEEEECC---------------------CCCeeCCcccchhhhccchhhh--------------hHHHHHHHHhcCh
Confidence 9999999999 98886 5589999999999853 5899999998764
Q ss_pred c--------eeeccceeeeEEEEEEecCCCeeEEEEeeEEec-CceeeeCCeeEeecCCccccccCCCCCCCC----CCC
Q 009986 390 T--------VTEVVRPHVARMRYRVTRLPKYMILHMRRFTKN-NFFVEKNPTLVNFPVKNLELKDYIPLPTPK----ENE 456 (521)
Q Consensus 390 ~--------~~~c~~~~~a~k~~~i~~lP~~LiihlkRF~~~-~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~----~~~ 456 (521)
+ |..|.....+.|+++|.+||+||+|||+||.++ ++...|+.+.|.||. .|||++|+...... ...
T Consensus 332 E~l~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~-~Ldl~~~~~~~~~~~~~~~~~ 410 (476)
T 3mhs_A 332 EQLKDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPT-YLNMKNYCSTKEKDKHSENGK 410 (476)
T ss_dssp EECSSCCCEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCCS-EEECGGGBSCCBCCC--CCCB
T ss_pred hhccCCCCcCCccCCcccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCCC-eeechhhcCcccccccccccC
Confidence 3 455667778899999999999999999999975 467889999999996 69999999754321 112
Q ss_pred CCCceEEEeEEEEEeccCCCCeEEEEEEECCCCcEEEEeCceeeeeCcccccCCCcEEEEEEEeC
Q 009986 457 KLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQQ 521 (521)
Q Consensus 457 ~~~~~Y~L~avI~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYllfYeR~~ 521 (521)
....+|+|+|||+|.|++++|||+||+|.. +++||+|||+.|++++.++|+..+||||||+|++
T Consensus 411 ~~~~~Y~L~avv~H~G~~~~GHY~a~vr~~-~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 474 (476)
T 3mhs_A 411 VPDIIYELIGIVSHKGTVNEGHYIAFCKIS-GGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQ 474 (476)
T ss_dssp CCCEEEEEEEEEEEEECSSSEEEEEEEECT-TSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEE
T ss_pred CCCCcEEEEEEEEeCCCCCCCceEEEEECC-CCcEEEEeCCceEECCHHHhccCCcEEEEEEEec
Confidence 345789999999999999999999999874 7899999999999999999999999999999974
No 2
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.9e-73 Score=642.77 Aligned_cols=389 Identities=19% Similarity=0.270 Sum_probs=323.5
Q ss_pred CCCCCccccccccccC---CCCcccccccCCCCceEEecccCcccccC------CCCCCcccccccCCccEEEEeCC---
Q 009986 102 RRDCPYLDTVNRQVLD---FDFEKFCSVSLSNLNVYACLVCGKYYQGR------GQKSHAYTHSLEAGHHVYINLRT--- 169 (521)
Q Consensus 102 ~~~c~~l~ti~r~~l~---~d~~k~Cs~~ls~~nl~~CL~CG~~~~G~------~~~~ha~~H~~~~~H~v~v~l~t--- 169 (521)
+..|+|+.++.+.... ......|+.|++..|+|+||+||.++||| |+++||+.|+.+++|+++|+++|
T Consensus 193 ~~~c~h~~~~~~~~~~~~~~~~~~~C~~c~~~~~lw~CL~Cg~vgC~r~~~~~~~~~~ha~~H~~~~~H~~~~~l~t~~~ 272 (854)
T 3ihp_A 193 RQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITP 272 (854)
T ss_dssp CCBCTTTTTCCCCSSCCCCCSSCCCCSSSCCCSSEEEETTTCCEEECCBC-CCCBCCSHHHHHHHHHCCCEEEETTCCBT
T ss_pred CCCCcCccccccccccccCCCCCCcCcCcCCcCceEEEecCCCccccccccCCCCCchHHHHHHhhcCCcEEEEcCCcCC
Confidence 4789999988643211 11224799999999999999999888875 45899999999999999999999
Q ss_pred --CceEecCCCCcccCCChhhhh------------------------------------------------hcCCccCCC
Q 009986 170 --EKVYCLPDGYEINDPSLEDIR------------------------------------------------HVGLNNIKE 199 (521)
Q Consensus 170 --~~vyc~~~~~~v~d~~l~di~------------------------------------------------~~GL~NlGN 199 (521)
++||||+|+++|.|+.|+++. ++||.|+||
T Consensus 273 ~~~~~~cy~~~~~v~~~~l~~~l~~~gi~~~~~~kt~k~~~el~~~~n~~~g~~~~~~~~g~~l~p~~~~G~~GL~NlGN 352 (854)
T 3ihp_A 273 DGADVYSYDEDDMVLDPSLAEHLSHFGIDMLKMQKTDKTMTELEIDMNQRIGEWELIQESGVPLKPLFGPGYTGIRNLGN 352 (854)
T ss_dssp TBCCEEETTTTEECBCTTHHHHHHHTTCCC-----------------------------------CCCSTTCCCBCCCSS
T ss_pred CCCeEEEccCCCeeeCccHHHHHHHhCcccccccccchhhhhhhhhhccccchhhhhcccCcccccccCCCccceEecCC
Confidence 999999999999998876631 139999999
Q ss_pred CchhhHHHHHHhCchhHHHHhcCcc------cccCCCChHHHHHHHHHHHHHccC------------------CCCCcCC
Q 009986 200 TDFVNVTIQSLMRVTPLRNFFLIPE------NYRHCKSPLVHRFGDLTRKIWHAR------------------NFKGQVS 255 (521)
Q Consensus 200 TCYmNsVLQ~L~~ip~fr~~~l~~~------~~~~~~~~l~~~l~~L~~~l~s~~------------------~~~~~vs 255 (521)
|||||||||+|+++|+||++|+... .......++.++|++|+..||+++ .++..|+
T Consensus 353 TCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~~~~~~~~~~~is 432 (854)
T 3ihp_A 353 SCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERVPEQKEVQDGIA 432 (854)
T ss_dssp CHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC---------------------CCBC
T ss_pred ceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhccccccccccccccccccccccCCCccC
Confidence 9999999999999999999998422 112345689999999999999864 3456899
Q ss_pred hHHHHHHHHHhcccCCCCCCcCCHHHHHHHHHHHHHHhhccCCCCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCC
Q 009986 256 PHEFLQAVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSD 335 (521)
Q Consensus 256 P~~ll~~i~~~s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~ 335 (521)
|..|++.++.. ++.|.+++||||+|||.+||+.|+++++. .++|.++|+|+++++++|..
T Consensus 433 P~~f~~~l~~~-~~~F~~~~QQDA~EFl~~LLd~L~~el~~----~s~i~~lF~G~l~s~i~C~~--------------- 492 (854)
T 3ihp_A 433 PRMFKALIGKG-HPEFSTNRQQDAQEFFLHLINMVERNCRS----SENPNEVFRFLVEEKIKCLA--------------- 492 (854)
T ss_dssp CHHHHHHHTTT-CTTTTSSSCCBHHHHHHHHHHHHHHTCTT----SCCGGGGTCEEEEEEEEETT---------------
T ss_pred hHHHHHHHhhh-ccccccccccCHHHHHHHHHHHHHHHhcc----cCCchhhcCceEEEEEEecC---------------
Confidence 99999999997 79999999999999999999999998854 45799999999999999999
Q ss_pred CCCCCCCCceeeeeecceeeecCCCCCCcchhh------------------hhcccCCCCchhhHhhhhcccc------e
Q 009986 336 GGDDHDNITTETSRMPFLMLGLDLPPPPLFKDV------------------MEKNIIPQVPLFNILKKFDGET------V 391 (521)
Q Consensus 336 ~~~~~~C~~~s~~~~~f~~LsL~lp~~~~~~~~------------------~~~~~~p~vsL~~~L~~f~~~~------~ 391 (521)
|+.++.+.++|++|+|+||..+..... ...++.++++|++||+.|++.+ |
T Consensus 493 ------C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~y~C 566 (854)
T 3ihp_A 493 ------TEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDDFWS 566 (854)
T ss_dssp ------TTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEEEEE
T ss_pred ------CCCEeEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHHHHHHhcCceEeeeeec
Confidence 999999999999999999976433210 0123466789999999999765 4
Q ss_pred eeccceeeeEEEEEEecCCCeeEEEEeeEEec-CceeeeCCeeEeecCCccccccCCCCCCCCC----------------
Q 009986 392 TEVVRPHVARMRYRVTRLPKYMILHMRRFTKN-NFFVEKNPTLVNFPVKNLELKDYIPLPTPKE---------------- 454 (521)
Q Consensus 392 ~~c~~~~~a~k~~~i~~lP~~LiihlkRF~~~-~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~---------------- 454 (521)
..|...+.+.|+++|.+||+||+||||||.++ ++...|+++.|.||. .|||++|+.....+.
T Consensus 567 ~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP~-~LDl~~y~~~~~q~~E~~lp~~~~~~~~~~~ 645 (854)
T 3ihp_A 567 TALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPE-ELDISQLRGTGLQPGEEELPDIAPPLVTPDE 645 (854)
T ss_dssp TTTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCCS-EEECGGGBCCCSCTTCCBCCCC---------
T ss_pred cccCCcceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecCC-cEehHHhccCCCCCCceeccccccccccccc
Confidence 45777788999999999999999999999984 578899999999995 699999976321000
Q ss_pred --------------------------------------------------------------------------------
Q 009986 455 -------------------------------------------------------------------------------- 454 (521)
Q Consensus 455 -------------------------------------------------------------------------------- 454 (521)
T Consensus 646 ~~~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~~~~s~~~~~~~~~~e~i~ 725 (854)
T 3ihp_A 646 PKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPPEDCVT 725 (854)
T ss_dssp -------CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC--------------CCHHHHH
T ss_pred ccccCcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccccccccccccccCCCCHHHHH
Confidence
Q ss_pred ----------------------------------------------------------------CCCCCceEEEeEEEEE
Q 009986 455 ----------------------------------------------------------------NEKLRSKYDLIANIVH 470 (521)
Q Consensus 455 ----------------------------------------------------------------~~~~~~~Y~L~avI~H 470 (521)
......+|+|+|||+|
T Consensus 726 ~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H 805 (854)
T 3ihp_A 726 TIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLFAFISH 805 (854)
T ss_dssp HHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC------------------CCCCCCCSEEEEEEEEEE
T ss_pred HHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCcccccccccccccccccccccccccccccCCCCCCCceEEEEEEEEe
Confidence 0011237999999999
Q ss_pred ec-cCCCCeEEEEEEECCCCcEEEEeCceeeeeCcccccCCCcEEEEEEEeC
Q 009986 471 DG-KPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQQ 521 (521)
Q Consensus 471 ~G-~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYllfYeR~~ 521 (521)
.| ++++|||+||+|. +++||+|||+.|+++. ......||||||+|..
T Consensus 806 ~G~~~~~GHY~~~~~~--~~~W~~~nD~~V~~~~--~~~~~~aYilfY~R~~ 853 (854)
T 3ihp_A 806 MGTSTMCGHYVCHIKK--EGRWVIYNDQKVCASE--KPPKDLGYIYFYQRVA 853 (854)
T ss_dssp ESSCSSCCEEEEEEEE--TTEEEEEETTEEEECS--SCCTTSCSEEEEEECC
T ss_pred ecCCCCCcCeEEEEEe--CCEEEEEECCeeEEcc--ccCCCcceEEEEEecC
Confidence 99 7889999999999 7999999999999973 4457889999999963
No 3
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.2e-62 Score=511.81 Aligned_cols=302 Identities=26% Similarity=0.450 Sum_probs=256.3
Q ss_pred hcCCccCCCCchhhHHHHHHhCchhHHHHhcCcccc--------cCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHH
Q 009986 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY--------RHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQA 262 (521)
Q Consensus 191 ~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~--------~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~ 262 (521)
++||.|+|||||||||||+|+|+|+|+++|+..... .....+++.+|+.|++.||+++ ...|+|..|+.+
T Consensus 8 ~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--~~~i~P~~~~~~ 85 (367)
T 2y6e_A 8 LCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGR--DAHVAPRMFKTQ 85 (367)
T ss_dssp CCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSS--CSEECCHHHHHH
T ss_pred CcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCC--CCCcCHHHHHHH
Confidence 579999999999999999999999999999853211 1224579999999999999987 478999999999
Q ss_pred HHHhcccCCCCCCcCCHHHHHHHHHHHHHHhhccCCC----------------------------CCCccccccCcEEEE
Q 009986 263 VMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKK----------------------------NTSIIYECFQGELEV 314 (521)
Q Consensus 263 i~~~s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~~----------------------------~~sii~~~F~g~l~~ 314 (521)
++.. ++.|.+++||||+|||.+||+.||+++....+ ..++|.++|+|++++
T Consensus 86 l~~~-~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~s 164 (367)
T 2y6e_A 86 VGRF-APQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKS 164 (367)
T ss_dssp HHHH-CGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEEE
T ss_pred HHHh-hhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEee
Confidence 9997 79999999999999999999999999864321 356899999999999
Q ss_pred EEEecCCCCCCCCCCcCCCCCCCCCCCCCceeeeeecceeeecCCCCCCcchhh-----hhcccCCCCchhhHhhhhccc
Q 009986 315 VKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDV-----MEKNIIPQVPLFNILKKFDGE 389 (521)
Q Consensus 315 ~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s~~~~~f~~LsL~lp~~~~~~~~-----~~~~~~p~vsL~~~L~~f~~~ 389 (521)
+++|.. |+..+.+.++|++|+|+||........ ......+.++|++||+.|+..
T Consensus 165 ~~~C~~---------------------C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~ 223 (367)
T 2y6e_A 165 TLVCPE---------------------CAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTM 223 (367)
T ss_dssp EEECTT---------------------TCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSC
T ss_pred eEEeCC---------------------CCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhccc
Confidence 999999 999999999999999999975321100 000123468999999999864
Q ss_pred c---------eeeccceeeeEEEEEEecCCCeeEEEEeeEEecCceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCc
Q 009986 390 T---------VTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRS 460 (521)
Q Consensus 390 ~---------~~~c~~~~~a~k~~~i~~lP~~LiihlkRF~~~~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~ 460 (521)
+ |..|...+.|+|+.+|.+||+||+||||||.++.+...|+.+.|.||++.|||++|+..+. ....
T Consensus 224 E~l~~~~~~~C~~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~-----~~~~ 298 (367)
T 2y6e_A 224 ETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLS-----ARPY 298 (367)
T ss_dssp EECCC-CCEEETTTTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSS-----SCCC
T ss_pred ccCCCCCCccCCCCCCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCC-----CCCc
Confidence 3 5567777889999999999999999999999998888999999999976799999997432 1246
Q ss_pred eEEEeEEEEEeccCCCCeEEEEEEECCCCcEEEEeCceeeeeCcccccCCCcEEEEEEEeC
Q 009986 461 KYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQQ 521 (521)
Q Consensus 461 ~Y~L~avI~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYllfYeR~~ 521 (521)
+|+|+|||+|.|++++|||+||+|+..+++||.|||+.|++++.++|...+||||||+|+.
T Consensus 299 ~Y~L~avv~H~G~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 359 (367)
T 2y6e_A 299 VYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRD 359 (367)
T ss_dssp EEEEEEEEEEECSSSSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECC
T ss_pred eEEEEEEeecCCCCCCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcC
Confidence 7999999999999999999999999778999999999999999999999999999999973
No 4
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=1.3e-61 Score=509.52 Aligned_cols=290 Identities=24% Similarity=0.434 Sum_probs=255.5
Q ss_pred hhcCCccCCCCchhhHHHHHHhCchhHHHHhcCccc--------ccCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHH
Q 009986 190 RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPEN--------YRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQ 261 (521)
Q Consensus 190 ~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~--------~~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~ 261 (521)
.++||.|+|||||||||||+|+|+|+|+++|+.... ......+++++|+.|++.||++. ...|+|..|++
T Consensus 61 g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~--~~~i~P~~f~~ 138 (396)
T 2gfo_A 61 ALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQ--YRYISPKDFKI 138 (396)
T ss_dssp TCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSC--EEEECCHHHHH
T ss_pred CcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCC--CceECHHHHHH
Confidence 357999999999999999999999999999985321 11234578999999999999987 46799999999
Q ss_pred HHHHhcccCCCCCCcCCHHHHHHHHHHHHHHhhccCC----------------------------CCCCccccccCcEEE
Q 009986 262 AVMKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK----------------------------KNTSIIYECFQGELE 313 (521)
Q Consensus 262 ~i~~~s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~----------------------------~~~sii~~~F~g~l~ 313 (521)
+++.. ++.|.+++||||+|||.+||+.||+++.... ...++|.++|+|+++
T Consensus 139 ~l~~~-~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~ 217 (396)
T 2gfo_A 139 TIGKI-NDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFK 217 (396)
T ss_dssp HHHHH-CGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHh-chhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEEE
Confidence 99987 7999999999999999999999999986532 135789999999999
Q ss_pred EEEEecCCCCCCCCCCcCCCCCCCCCCCCCceeeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcccc---
Q 009986 314 VVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET--- 390 (521)
Q Consensus 314 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~--- 390 (521)
++++|.. |+..+.+.++|++|+|+||..+ ..+|++||+.|...+
T Consensus 218 s~i~C~~---------------------C~~~s~~~e~f~~LsL~ip~~~------------~~sL~~~L~~f~~~E~l~ 264 (396)
T 2gfo_A 218 STVQCLT---------------------CHKKSRTFEAFMYLSLPLASTS------------KCTLQDCLRLFSKEEKLT 264 (396)
T ss_dssp EEEEETT---------------------TCCEEEEEEEESSEEECCSCSS------------EEEHHHHHHHHTSCEEEC
T ss_pred EEEEeCC---------------------CCceecccccceeeeecccccc------------cCCHHHHHHHhCCccccc
Confidence 9999999 9999999999999999999642 368999999998643
Q ss_pred ------eeeccceeeeEEEEEEecCCCeeEEEEeeEEecCceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEE
Q 009986 391 ------VTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDL 464 (521)
Q Consensus 391 ------~~~c~~~~~a~k~~~i~~lP~~LiihlkRF~~~~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L 464 (521)
|..|...+.|.|+++|.+||+||+|||+||.++.....|+.+.|.||++.|||++|+..+.. ...+|+|
T Consensus 265 ~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~-----~~~~Y~L 339 (396)
T 2gfo_A 265 DNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKN-----NLKKYNL 339 (396)
T ss_dssp STTCEEETTTTEEECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSCCS-----SCCCBEE
T ss_pred CCcccccCCcccccceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhccccccccCCCC-----CCceEEE
Confidence 45567777889999999999999999999999877788999999999877999999974321 2356999
Q ss_pred eEEEEEeccCCCCeEEEEEEECCCCcEEEEeCceeeeeCcccccCCCcEEEEEEEe
Q 009986 465 IANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQ 520 (521)
Q Consensus 465 ~avI~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYllfYeR~ 520 (521)
+|||+|.|++++|||+||+|+..+++||.|||+.|++++.+.|...+||||||+|+
T Consensus 340 ~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~ 395 (396)
T 2gfo_A 340 FSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSL 395 (396)
T ss_dssp EEEEEEESCTTTCEEEEEEEETTTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC
T ss_pred EEEEEecCCCCCCceEEEEcCCCCCCEEEEeCCCeEECCHHHcCCCCceEEEEEEc
Confidence 99999999999999999999977799999999999999999999999999999986
No 5
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=5.8e-61 Score=493.78 Aligned_cols=293 Identities=27% Similarity=0.460 Sum_probs=256.6
Q ss_pred hhcCCccCCCCchhhHHHHHHhCchhHHHHhcCcccc------cCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHH
Q 009986 190 RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY------RHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAV 263 (521)
Q Consensus 190 ~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~------~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i 263 (521)
.++||.|+|||||||||||+|+++|+||++++..... .....+++++|+.|++.||.... ...++|..|++++
T Consensus 8 g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~-~~~~~p~~~~~~l 86 (348)
T 3nhe_A 8 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSP-NDVVSPSEFKTQI 86 (348)
T ss_dssp SCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCT-TCEECCHHHHHHH
T ss_pred CCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCCC-CCccCHHHHHHHH
Confidence 4679999999999999999999999999999853221 12345899999999999996432 5789999999999
Q ss_pred HHhcccCCCCCCcCCHHHHHHHHHHHHHHhhccCC----------------------------CCCCccccccCcEEEEE
Q 009986 264 MKASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTK----------------------------KNTSIIYECFQGELEVV 315 (521)
Q Consensus 264 ~~~s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~----------------------------~~~sii~~~F~g~l~~~ 315 (521)
+.. .+.|.+++||||+|||.+||+.||+++.... ...++|.++|+|++..+
T Consensus 87 ~~~-~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~ 165 (348)
T 3nhe_A 87 QRY-APRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSS 165 (348)
T ss_dssp HHH-SGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEEEEEE
T ss_pred HHh-hhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceEEEEE
Confidence 998 7899999999999999999999999986432 12467999999999999
Q ss_pred EEecCCCCCCCCCCcCCCCCCCCCCCCCceeeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcccc-----
Q 009986 316 KEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET----- 390 (521)
Q Consensus 316 ~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~----- 390 (521)
++|.. |+..+.+.++|+.|+|+||... .+.++|++||+.|...+
T Consensus 166 ~~C~~---------------------C~~~s~~~e~f~~LsL~i~~~~----------~~~~sl~~~L~~~~~~e~l~~~ 214 (348)
T 3nhe_A 166 LTCTD---------------------CGYCSTVFDPFWDLSLPIAKRG----------YPEVTLMDCMRLFTKEDVLDGD 214 (348)
T ss_dssp EEETT---------------------TCCEEEEEEEESSEEECCCSSC----------SSCEEHHHHHHHHHSCEEECGG
T ss_pred EEcCC---------------------CCCEeeeeccceEEeeeCCCcc----------cCCCCHHHHHHHhcCceEecCC
Confidence 99999 9999999999999999998742 24579999999997643
Q ss_pred ----eeeccceeeeEEEEEEecCCCeeEEEEeeEEecCceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEEeE
Q 009986 391 ----VTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIA 466 (521)
Q Consensus 391 ----~~~c~~~~~a~k~~~i~~lP~~LiihlkRF~~~~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~a 466 (521)
|..|...+.+.|+.+|.+||+||+|||+||.++.+...|+.+.|.||++.|||++|+.... ...+|+|+|
T Consensus 215 ~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~------~~~~Y~L~a 288 (348)
T 3nhe_A 215 EKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENT------NHAVYNLYA 288 (348)
T ss_dssp GCCEETTTTEECCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBCTTC------CCCEEEEEE
T ss_pred CceECCCCCCcccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhhhcCCCC------CCCcEEEEE
Confidence 4556677788999999999999999999999888888999999999987799999986322 245799999
Q ss_pred EEEEeccCCCCeEEEEEEECCCCcEEEEeCceeeeeCcccccCCCcEEEEEEEeC
Q 009986 467 NIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQQ 521 (521)
Q Consensus 467 vI~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYllfYeR~~ 521 (521)
||+|.|++++|||+||+|++.+++||+|||+.|++++.++|...+||||||+|+.
T Consensus 289 vv~H~G~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aY~LfY~r~~ 343 (348)
T 3nhe_A 289 VSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELAS 343 (348)
T ss_dssp EEEEEECSSCEEEEEEEECTTTCCEEEEETTEEEEECGGGTCCTTEEEEEEEECC
T ss_pred EEEccCCCCCcccEEEEccCCCCcEEEEeCCCceECCHHHcCCCCceEEEEEecC
Confidence 9999999999999999999878999999999999999999999999999999974
No 6
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=1.7e-60 Score=491.60 Aligned_cols=293 Identities=26% Similarity=0.384 Sum_probs=249.9
Q ss_pred hhcCCccCCCCchhhHHHHHHhCchhHHHHhcCccc-----ccCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHH
Q 009986 190 RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPEN-----YRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVM 264 (521)
Q Consensus 190 ~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~-----~~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~ 264 (521)
.++||.|+|||||||||||+|+++|+||++++.... ......++..+|+.|++.||++.. ...++|..|+.+++
T Consensus 2 G~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~-~~~v~p~~~~~~l~ 80 (355)
T 3i3t_A 2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPDS-CEAVNPTRFRAVFQ 80 (355)
T ss_dssp -CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCSS-CCCBCCHHHHHHHH
T ss_pred CCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCCC-CCcccHHHHHHHHH
Confidence 367999999999999999999999999999985321 112345899999999999999874 35799999999999
Q ss_pred HhcccCCCCCCcCCHHHHHHHHHHHHHHhhccCCC-------------------------------------------CC
Q 009986 265 KASKKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKK-------------------------------------------NT 301 (521)
Q Consensus 265 ~~s~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~~-------------------------------------------~~ 301 (521)
.. .+.|.+++||||+|||.+||+.||+++....+ ..
T Consensus 81 ~~-~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T 3i3t_A 81 KY-VPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLERED 159 (355)
T ss_dssp HH-CGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHHCC
T ss_pred Hh-ChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhccC
Confidence 87 79999999999999999999999999865321 23
Q ss_pred CccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCceeeeeecceeeecCCCCCCcchhhhhcccCCCCchhh
Q 009986 302 SIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFN 381 (521)
Q Consensus 302 sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~ 381 (521)
++|.++|+|++...++|.. |+..+.+.++|++|+|+||.... ..+.++|++
T Consensus 160 s~i~~~F~g~~~~~~~C~~---------------------C~~~s~~~e~f~~lsl~i~~~~~--------~~~~~sl~~ 210 (355)
T 3i3t_A 160 SKIVDLFVGQLKSCLKCQA---------------------CGYRSTTFEVFCDLSLPIPKKGF--------AGGKVSLRD 210 (355)
T ss_dssp SHHHHHHCEEEEEEEEETT---------------------TCCEEEEEEEESSEEECCCC---------------CBHHH
T ss_pred CcccccccEEEEeeEEeCC---------------------CCCCceeeccceeecccCCcccc--------ccCccCHHH
Confidence 6699999999999999999 99999999999999999997532 124579999
Q ss_pred Hhhhhcccc---------eeeccceeeeEEEEEEecCCCeeEEEEeeEEecCceeeeCCeeEeecCCccccccCCCCCCC
Q 009986 382 ILKKFDGET---------VTEVVRPHVARMRYRVTRLPKYMILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTP 452 (521)
Q Consensus 382 ~L~~f~~~~---------~~~c~~~~~a~k~~~i~~lP~~LiihlkRF~~~~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~ 452 (521)
||+.|+..+ |..|.....+.|+..|.+||+||+|||+||.++.+...|+.+.|.||++.|||.+|+...
T Consensus 211 ~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~-- 288 (355)
T 3i3t_A 211 CFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDK-- 288 (355)
T ss_dssp HHHHHHCCEEECGGGCCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC----
T ss_pred HHHHhCCccccCCCCCeeCCCCCCccceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhccCC--
Confidence 999998644 455677788999999999999999999999998888899999999998789999998632
Q ss_pred CCCCCCCceEEEeEEEEEeccCCCCeEEEEEEECCCCcEEEEeCceeeeeCcccccCCCcEEEEEEEeC
Q 009986 453 KENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSETYMQIYEQQQ 521 (521)
Q Consensus 453 ~~~~~~~~~Y~L~avI~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~v~~~~aYllfYeR~~ 521 (521)
....+|+|+|||+|.|++++|||+||+|. .++||+|||+.|++++.++|...+||||||+|+.
T Consensus 289 ----~~~~~Y~L~avv~H~G~~~~GHY~~~~~~--~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~ 351 (355)
T 3i3t_A 289 ----AGSPVYQLYALCNHSGSVHYGHYTALCRC--QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQ 351 (355)
T ss_dssp ------CCEEEEEEEEEEEEETTEEEEEEEEEE--TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC-
T ss_pred ----CCCcceEEEEEEEecCCCCCCeEEEEEEc--CCeEEEEcCCCcEECCHHHcCCCCcEEEEEEecc
Confidence 12457999999999999999999999999 6789999999999999999999999999999963
No 7
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=2.2e-58 Score=485.35 Aligned_cols=291 Identities=22% Similarity=0.284 Sum_probs=246.1
Q ss_pred hhcCCccCCCCchhhHHHHHHhCchhHHHHhcCcccc--cC----CCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHH
Q 009986 190 RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY--RH----CKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAV 263 (521)
Q Consensus 190 ~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~--~~----~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i 263 (521)
.++||.|+|||||||||||+|+|+|+||++|+..... .. ...+++++|+.||+.||.+. ..|+|..|++++
T Consensus 13 ~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~---~~v~P~~~~~~l 89 (404)
T 2ayn_A 13 LPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTS---SSIPPIILLQFL 89 (404)
T ss_dssp CCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHC---SEECCHHHHHHH
T ss_pred CCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCC---CcCChHHHHHHH
Confidence 4679999999999999999999999999999864322 11 13479999999999999875 689999999999
Q ss_pred HHhcccCCC------CCCcCCHHHHHHHHHHHHHHhhccCC------------------CCCCccccccCcEEEEEEEec
Q 009986 264 MKASKKRFR------IGVQSNPVEFMSWLLNTLHSDLRNTK------------------KNTSIIYECFQGELEVVKEIP 319 (521)
Q Consensus 264 ~~~s~~~F~------~~~QqDA~EFl~~LLn~L~~~l~~~~------------------~~~sii~~~F~g~l~~~~~c~ 319 (521)
+.. .+.|. ++.||||+|||.+||+.||+++.... ...++|.++|+|++.++++|.
T Consensus 90 ~~~-~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~l~s~i~C~ 168 (404)
T 2ayn_A 90 HMA-FPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCT 168 (404)
T ss_dssp HHH-CGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEEEEEEEEES
T ss_pred HHh-CchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccEEEEEEEEec
Confidence 997 78887 58999999999999999999986532 245789999999999999999
Q ss_pred CCCCCCCCCCcCCCCCCCCCCCCCce--eeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcccc----eee
Q 009986 320 KNTISGNDQNTEKGSDGGDDHDNITT--ETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET----VTE 393 (521)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~C~~~--s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~----~~~ 393 (521)
. |+.. +.+.++|++|+|+||... .+|.+||+.|+.++ |..
T Consensus 169 ~---------------------C~~~s~s~~~e~f~~Lsl~i~~~~-------------~~l~~~L~~~~~e~l~~~c~~ 214 (404)
T 2ayn_A 169 E---------------------SEEEEVTKGKENQLQLSCFINQEV-------------KYLFTGLKLRLQEEITKQSPT 214 (404)
T ss_dssp S---------------------SCCCCCBCCEEEESSEEEECSSSC-------------CBHHHHHHHTTEECCCCEETT
T ss_pred C---------------------CCCccCceeeccCceEEeecCCCc-------------ccHHHHHHHhcccceeecchh
Confidence 9 9888 479999999999998642 37889998887643 556
Q ss_pred ccceeeeEEEEEEecCCCeeEEEEeeEEecCc--eeeeCCeeEeecCCccccccCCCCCCC-------------------
Q 009986 394 VVRPHVARMRYRVTRLPKYMILHMRRFTKNNF--FVEKNPTLVNFPVKNLELKDYIPLPTP------------------- 452 (521)
Q Consensus 394 c~~~~~a~k~~~i~~lP~~LiihlkRF~~~~~--~~~K~~~~V~FP~~~Ldl~~~~~~~~~------------------- 452 (521)
|.....+.|+.+|.+||+||+|||+||.++.. ...|+.+.|.||. .|||.+|+.....
T Consensus 215 c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (404)
T 2ayn_A 215 LQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPL-MLDMYELCTPELQEKMVSFRSKFKDLEDKKVN 293 (404)
T ss_dssp TTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCS-EEECGGGBCHHHHHHTTTTTGGGTCTTC----
T ss_pred hCCccceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCc-eeEHhHhcChhhhhhcchhhhHHhhhhcccch
Confidence 77777789999999999999999999998753 5689999999997 6999999863100
Q ss_pred -------------------------CCCCCCCceEEEeEEEEEec-cCCCCeEEEEEEECCCCcEEEEeCceeeeeCccc
Q 009986 453 -------------------------KENEKLRSKYDLIANIVHDG-KPEGGFYRVFVQRKSEELWYEMQDLHVSETLPQM 506 (521)
Q Consensus 453 -------------------------~~~~~~~~~Y~L~avI~H~G-~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~~~ 506 (521)
..+......|+|+|||+|.| ++++|||+||+|+. +++||.|||+.|++++.++
T Consensus 294 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~-~~~W~~fnD~~V~~v~~~~ 372 (404)
T 2ayn_A 294 QQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRK-QDEWIKFDDDKVSIVTPED 372 (404)
T ss_dssp ------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEE-TTEEEEEBTTBCCCBCHHH
T ss_pred hhhhhccccccccccccccccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECC-CCeEEEeecccceecCHHH
Confidence 00112347899999999999 69999999999984 7899999999999999999
Q ss_pred ccCCC-------cEEEEEEEe
Q 009986 507 VALSE-------TYMQIYEQQ 520 (521)
Q Consensus 507 v~~~~-------aYllfYeR~ 520 (521)
|.... ||||||+|+
T Consensus 373 v~~~~~g~~~~~aYiLfY~r~ 393 (404)
T 2ayn_A 373 ILRLSGGGDWHIAYVLLYGPR 393 (404)
T ss_dssp HGGGGSSSSSCEEEEEEEECC
T ss_pred HHhhhCCCCCceEEEEEEEec
Confidence 98766 999999986
No 8
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=2.4e-57 Score=470.02 Aligned_cols=284 Identities=19% Similarity=0.266 Sum_probs=237.6
Q ss_pred hhcCCccCCCCchhhHHHHHHhCchhHHHHhcCcccc-cCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhcc
Q 009986 190 RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY-RHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASK 268 (521)
Q Consensus 190 ~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~-~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s~ 268 (521)
.++||.|+|||||||||||+|+|+|+||++++..... .....++.++|+.||..||.+. ..++|..|+..++ .
T Consensus 5 g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~l~~~~~---~ 78 (353)
T 1nb8_A 5 GYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSD---KPVGTKKLTKSFG---W 78 (353)
T ss_dssp SCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTTSCTTTCHHHHHHHHHHHHHHCS---SCBCCHHHHHHHT---C
T ss_pred CCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCCCcccccHHHHHHHHHHHHhhcC---CCCCCHHHHhhcC---C
Confidence 4679999999999999999999999999999753221 2234579999999999999875 4789999988774 4
Q ss_pred cCCCCCCcCCHHHHHHHHHHHHHHhhccCCCCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCceeee
Q 009986 269 KRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTETS 348 (521)
Q Consensus 269 ~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s~~ 348 (521)
+.|.++.||||+|||.+||+.||+++++.. ..++|.++|+|++.++++|.. |+..+.+
T Consensus 79 ~~~~~~~QqDA~EFl~~LLd~L~~~~~~~~-~~s~i~~~F~g~~~~~i~C~~---------------------C~~~s~~ 136 (353)
T 1nb8_A 79 ETLDSFMQHDVQELCRVLLDNVENKMKGTC-VEGTIPKLFRGKMVSYIQCKE---------------------VDYRSDR 136 (353)
T ss_dssp CBTTTTTTSCHHHHHHHHHHHHHHHTTTST-TTTHHHHHHCEEEEEEEEESS---------------------SCCEEEE
T ss_pred CCCCcccchhHHHHHHHHHHHHHHHhcCCC-ccchhhhhceeEEEEEEEecc---------------------CCCeece
Confidence 679999999999999999999999987543 457899999999999999999 9999999
Q ss_pred eecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcccce------eecc--ceeeeEEEEEEecCCCeeEEEEeeE
Q 009986 349 RMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETV------TEVV--RPHVARMRYRVTRLPKYMILHMRRF 420 (521)
Q Consensus 349 ~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~~------~~c~--~~~~a~k~~~i~~lP~~LiihlkRF 420 (521)
.++|++|+|+||.. .+|.+||..|...+. ..|. +.+.|.|+.+|.+||+||+|||+||
T Consensus 137 ~e~f~~LsL~i~~~--------------~~l~~~L~~~~~~E~l~~~~~~~C~~c~~~~a~k~~~i~~lP~vL~i~LkRF 202 (353)
T 1nb8_A 137 REDYYDIQLSIKGK--------------KNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRF 202 (353)
T ss_dssp EEEESCEEECCTTC--------------SBHHHHHHHHTCCEEECTTTCEECGGGCEECEEEEEEESCCCSEEEEEECCC
T ss_pred eeeeEEEEEEECCC--------------cchHHHHHHhhCccccCCCccccCCcCccEeeEEEEEhhcCCCceEEEEecE
Confidence 99999999999864 367888888765432 2232 3456789999999999999999999
Q ss_pred EecC--ceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEEeEEEEEeccCCCCeEEEEEEECCCCcEEEEeCce
Q 009986 421 TKNN--FFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLH 498 (521)
Q Consensus 421 ~~~~--~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~ 498 (521)
.++. +...|+.+.|.||. .|||.+|+....+ .....|+|+|||+|.|++++|||+||+|+..+++||.|||+.
T Consensus 203 ~~~~~~~~~~K~~~~v~fp~-~Ldl~~~~~~~~~----~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~ 277 (353)
T 1nb8_A 203 MYDPQTDQNIKINDRFEFPE-QLPLDEFLQKTDP----KDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDV 277 (353)
T ss_dssp C--------CCCCCCCBCCS-EEECGGGBSSCCT----TSCCEEEEEEEEEEESSTTCCCEEEEECTTSSSCCEEEETTE
T ss_pred EEecccCceEecCcEEECCC-eeehhhhhcccCC----CCCceEEEEEEEEEeCCCCCcEEEEEEecCCCCCEEEEECcc
Confidence 8764 45789999999996 6999999974321 224679999999999999999999999986689999999999
Q ss_pred eeeeCcccccC---------------CCcEEEEEEEe
Q 009986 499 VSETLPQMVAL---------------SETYMQIYEQQ 520 (521)
Q Consensus 499 V~~v~~~~v~~---------------~~aYllfYeR~ 520 (521)
|++++.++|+. .+||||||+|+
T Consensus 278 V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~ 314 (353)
T 1nb8_A 278 VSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE 314 (353)
T ss_dssp EEECCHHHHTGGGSCCC-------CCEEEEEEEEEET
T ss_pred eEECCHHHHHHHhcCCCccccccCcCCeEEEEEEEEC
Confidence 99999888763 57999999996
No 9
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=2.2e-57 Score=479.95 Aligned_cols=288 Identities=20% Similarity=0.256 Sum_probs=243.0
Q ss_pred hhcCCccCCCCchhhHHHHHHhCchhHHHHhcCcccccCC----------CChHHHHHHHHHHHHHccCCCCCcCChHHH
Q 009986 190 RHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHC----------KSPLVHRFGDLTRKIWHARNFKGQVSPHEF 259 (521)
Q Consensus 190 ~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~----------~~~l~~~l~~L~~~l~s~~~~~~~vsP~~l 259 (521)
.++||.|+|||||||||||+|+++|+||++|+........ ..+++++|+.||..||.+. ...|+|..|
T Consensus 23 ~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~--~~~v~p~~~ 100 (415)
T 1vjv_A 23 LPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKS--FKSVLPVVL 100 (415)
T ss_dssp CCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC---CCEECCHHH
T ss_pred CCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCC--CCccCHHHH
Confidence 3579999999999999999999999999999864332211 2379999999999999875 478999999
Q ss_pred HHHHHHhcccCCC-------CCCcCCHHHHHHHHHHHHHHhhccCCCCCCccccccCcEEEEEEEecCCCCCCCCCCcCC
Q 009986 260 LQAVMKASKKRFR-------IGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEK 332 (521)
Q Consensus 260 l~~i~~~s~~~F~-------~~~QqDA~EFl~~LLn~L~~~l~~~~~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~ 332 (521)
++.++.. .+.|. ++.||||+|||.+||+.|++++.. ++|.++|+ +++++++|..
T Consensus 101 ~~~l~~~-~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~-----~~i~~~F~-~~~~~~~C~~------------ 161 (415)
T 1vjv_A 101 LNTLRKC-YPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD-----KFSEDFRI-QFKTTIKDTA------------ 161 (415)
T ss_dssp HHHHHHH-CGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH-----HHHTTTCE-EEEEEEEETT------------
T ss_pred HHHHHHh-CchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc-----chHHHHHH-hheEEEEECC------------
Confidence 9999998 68998 899999999999999999999864 57999999 9999999999
Q ss_pred CCCCCCCCCCCcee--eeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcccc----eeeccceeeeEEEEEE
Q 009986 333 GSDGGDDHDNITTE--TSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGET----VTEVVRPHVARMRYRV 406 (521)
Q Consensus 333 ~~~~~~~~~C~~~s--~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~----~~~c~~~~~a~k~~~i 406 (521)
|+..+ .+.++|+.|+|+||... .+|.+||..|..++ |..|.....+.|+.+|
T Consensus 162 ---------C~~~s~s~~~e~f~~Lsl~i~~~~-------------~~l~~~L~~~~~e~i~~~c~~c~~~~~a~k~~~i 219 (415)
T 1vjv_A 162 ---------NDNDITVKENESDSKLQCHISGTT-------------NFMRNGLLEGLNEKIEKRSDLTGANSIYSVEKKI 219 (415)
T ss_dssp ---------EEEEEEEECCCEESCEEECCCTTC-------------CBHHHHHHHHHEEC---------CCCCEEEEEEE
T ss_pred ---------CCCCccccccccceeeeecccccc-------------chHHHHHHHHhhhhhhhcccccCCcccEEEEEEc
Confidence 98876 58999999999998642 37889998887643 5567777788999999
Q ss_pred ecCCCeeEEEEeeEEecC--ceeeeCCeeEeecCCccccccCCCCCC---------------------------------
Q 009986 407 TRLPKYMILHMRRFTKNN--FFVEKNPTLVNFPVKNLELKDYIPLPT--------------------------------- 451 (521)
Q Consensus 407 ~~lP~~LiihlkRF~~~~--~~~~K~~~~V~FP~~~Ldl~~~~~~~~--------------------------------- 451 (521)
.+||+||+|||+||.++. +...|+.+.|.||. .|||.+|+....
T Consensus 220 ~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~-~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~ 298 (415)
T 1vjv_A 220 SRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPF-QLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPS 298 (415)
T ss_dssp EECBSEEEEEECCEEEETTTTEEEECCCCCBCCS-EEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred ccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCc-EeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhcccccc
Confidence 999999999999999875 36789999999996 699999986310
Q ss_pred -------------------------------------CCCCCCCCceEEEeEEEEEec-cCCCCeEEEEEEE-CCCCcEE
Q 009986 452 -------------------------------------PKENEKLRSKYDLIANIVHDG-KPEGGFYRVFVQR-KSEELWY 492 (521)
Q Consensus 452 -------------------------------------~~~~~~~~~~Y~L~avI~H~G-~~~~GHY~a~vk~-~~~~~W~ 492 (521)
..........|+|+|||+|.| ++++|||+||+|. ..+++||
T Consensus 299 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~ 378 (415)
T 1vjv_A 299 SSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWY 378 (415)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEE
T ss_pred ccccccccchhhhhchhhHHhhhhhhhhhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEE
Confidence 000112347899999999999 7999999999998 5689999
Q ss_pred EEeCceeeeeCcccccCCC-------cEEEEEEEeC
Q 009986 493 EMQDLHVSETLPQMVALSE-------TYMQIYEQQQ 521 (521)
Q Consensus 493 ~~nD~~V~~v~~~~v~~~~-------aYllfYeR~~ 521 (521)
+|||+.|++++.++|.... ||||||+|+.
T Consensus 379 ~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 379 KFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFG 414 (415)
T ss_dssp EEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEETT
T ss_pred EeECCcCeEcCHHHHhhhcCCCCcceEEEEEEEecC
Confidence 9999999999999998766 9999999973
No 10
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=3.4e-54 Score=468.52 Aligned_cols=285 Identities=19% Similarity=0.264 Sum_probs=239.8
Q ss_pred hhhcCCccCCCCchhhHHHHHHhCchhHHHHhcCcccc-cCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhc
Q 009986 189 IRHVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENY-RHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKAS 267 (521)
Q Consensus 189 i~~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~-~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s 267 (521)
..++||.|+|||||||||||+|+++|+||++++..... .....++.++|+.||..||.+. ..++|..|+..++
T Consensus 173 ~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~l~~~~~--- 246 (522)
T 2f1z_A 173 TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSD---KPVGTKKLTKSFG--- 246 (522)
T ss_dssp TSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCSSCTTTCHHHHHHHHHHHHHHCS---SCBCCTTHHHHTC---
T ss_pred CCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccCCcccchHHHHHHHHHHHHhcCC---CccCcHHHHhhcC---
Confidence 45679999999999999999999999999998753221 2234578999999999999875 4789999987763
Q ss_pred ccCCCCCCcCCHHHHHHHHHHHHHHhhccCCCCCCccccccCcEEEEEEEecCCCCCCCCCCcCCCCCCCCCCCCCceee
Q 009986 268 KKRFRIGVQSNPVEFMSWLLNTLHSDLRNTKKNTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGSDGGDDHDNITTET 347 (521)
Q Consensus 268 ~~~F~~~~QqDA~EFl~~LLn~L~~~l~~~~~~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~~~~~~~~C~~~s~ 347 (521)
.+.|.++.||||+|||.+||+.|++++++.. ..++|.++|+|++.++++|.. |+..+.
T Consensus 247 ~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~~-~~s~i~~lF~G~~~s~i~C~~---------------------C~~~s~ 304 (522)
T 2f1z_A 247 WETLDSFMQHDVQELCRVLLDNVENKMKGTC-VEGTIPKLFRGKMVSYIQCKE---------------------VDYRSD 304 (522)
T ss_dssp CCTTTSSTTSCHHHHHHHHHHHHHHHHTTST-TTTHHHHHHCEEEEEEECCSS---------------------SCCCCC
T ss_pred CccCCCcccccHHHHHHHHHHHHHhhccCCc-cccchhhheeEEEEEEEEcCC---------------------CCceee
Confidence 4679999999999999999999999987643 457899999999999999999 999999
Q ss_pred eeecceeeecCCCCCCcchhhhhcccCCCCchhhHhhhhcccce------eecc--ceeeeEEEEEEecCCCeeEEEEee
Q 009986 348 SRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFDGETV------TEVV--RPHVARMRYRVTRLPKYMILHMRR 419 (521)
Q Consensus 348 ~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~~f~~~~~------~~c~--~~~~a~k~~~i~~lP~~LiihlkR 419 (521)
+.++|++|+|+||.. .+|.+||..|...+. ..|. +.+.|.|+.+|.+||+||+|||+|
T Consensus 305 ~~e~f~~LsL~i~~~--------------~~l~~~L~~~~~~E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~i~LkR 370 (522)
T 2f1z_A 305 RREDYYDIQLSIKGK--------------KNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMR 370 (522)
T ss_dssp EEEEESCEEECCTTC--------------CBHHHHHHHHTCEEEECTTSCBCCGGGCSBCEEEEEEESCCCSEEEEEECC
T ss_pred eeeeeEEEEEEeCCc--------------ccchHHHHHhhceeecCCcceeecCcCCccceEEEEEeecCCceEEEEEEe
Confidence 999999999999864 367888888775432 2232 345688999999999999999999
Q ss_pred EEecC--ceeeeCCeeEeecCCccccccCCCCCCCCCCCCCCceEEEeEEEEEeccCCCCeEEEEEEECCCCcEEEEeCc
Q 009986 420 FTKNN--FFVEKNPTLVNFPVKNLELKDYIPLPTPKENEKLRSKYDLIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDL 497 (521)
Q Consensus 420 F~~~~--~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~~~~~~~~~Y~L~avI~H~G~~~~GHY~a~vk~~~~~~W~~~nD~ 497 (521)
|.++. +...|+.+.|.||. .|||.+|+....+ .....|+|+|||+|.|++++|||+||+|+..+++||+|||.
T Consensus 371 F~~~~~~~~~~Ki~~~v~fp~-~Ldl~~~~~~~~~----~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~ 445 (522)
T 2f1z_A 371 FMYDPQTDQNIKINDRFEFPE-QLPLDEFLQKTDP----KDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDD 445 (522)
T ss_dssp EEECSSSSCEEECCCCCBCCS-EEECGGGBSSCCT----TSCCEEEEEEEEEEECSSSCSEEEEEECTTSSSCCEEEETT
T ss_pred EEEcccCCcceEcCcEEeCCC-eecchhhhccccC----CCCcEEEEEEEEEecccCCCceEEEEEecCCCCCEEEEECc
Confidence 99874 46789999999996 6999999974321 22467999999999999999999999997668999999999
Q ss_pred eeeeeCcccccC---------------CCcEEEEEEEe
Q 009986 498 HVSETLPQMVAL---------------SETYMQIYEQQ 520 (521)
Q Consensus 498 ~V~~v~~~~v~~---------------~~aYllfYeR~ 520 (521)
.|++++.++|+. .+||||||+|+
T Consensus 446 ~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~ 483 (522)
T 2f1z_A 446 VVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE 483 (522)
T ss_dssp EEEECCHHHHSTTSSCCC--------CEEEEEEEEEET
T ss_pred eeEECCHHHHHHhhcCCCccccccCcCCceEEEEEEEC
Confidence 999999988763 57999999996
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.94 E-value=1.6e-27 Score=241.00 Aligned_cols=219 Identities=13% Similarity=0.182 Sum_probs=144.1
Q ss_pred hcCCccCCCCchhhHHHHHHhCchhHHHHhcCcccccCCC---ChHHHHH-HHHHHHHHccCCCCCcCChHHHHHHHHHh
Q 009986 191 HVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCK---SPLVHRF-GDLTRKIWHARNFKGQVSPHEFLQAVMKA 266 (521)
Q Consensus 191 ~~GL~NlGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~---~~l~~~l-~~L~~~l~s~~~~~~~vsP~~ll~~i~~~ 266 (521)
..||.|+||||||||.||+|+++|++++.++......... ..+...| ..|+..|.. ..+.|..|+..+++.
T Consensus 9 p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~~~~~~l~~~L~r~i~~~Lrk-----~~~~P~~~l~~LR~~ 83 (374)
T 2vhf_A 9 KKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRI-----YGYVCATKIMKLRKI 83 (374)
T ss_dssp SCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSCTTHHHHHHHHHHTTHHHHHH-----TSEECHHHHHHHHHH
T ss_pred CccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHHHHhh-----cCCCcHHHHHHHHHH
Confidence 4699999999999999999999999999998532111111 1467677 677777764 579999999999988
Q ss_pred cccCCCC-----CCcCCHHHHHHHHHHHHHHh-hc--cC-C-C--CCCccccccCcEEEEEEEecCCCCCCCCCCcCCCC
Q 009986 267 SKKRFRI-----GVQSNPVEFMSWLLNTLHSD-LR--NT-K-K--NTSIIYECFQGELEVVKEIPKNTISGNDQNTEKGS 334 (521)
Q Consensus 267 s~~~F~~-----~~QqDA~EFl~~LLn~L~~~-l~--~~-~-~--~~sii~~~F~g~l~~~~~c~~~~~~~~~~~~~~~~ 334 (521)
.|+|.. ++||||.|||..||+.|... +. .. . . ..+.+.++|.
T Consensus 84 -~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s~~~~~~~~~~~q~f~------------------------- 137 (374)
T 2vhf_A 84 -LEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFM------------------------- 137 (374)
T ss_dssp -HHHHC--------CCCHHHHHHHHHTTTTCCCCSEEEEETTCCCEEESCEECCC-------------------------
T ss_pred -hHHHhcccCCCccccCHHHHHHHHHHHHhhcccccccccccccccccHHHHHhc-------------------------
Confidence 576654 89999999999999988753 21 00 0 0 0011111111
Q ss_pred CCCCCCCCCceeeeeecceeeecCCCCCCcchhhhhcccCCCCchhhHhh-hhcccceeeccceeeeEEEEEEecCCCee
Q 009986 335 DGGDDHDNITTETSRMPFLMLGLDLPPPPLFKDVMEKNIIPQVPLFNILK-KFDGETVTEVVRPHVARMRYRVTRLPKYM 413 (521)
Q Consensus 335 ~~~~~~~C~~~s~~~~~f~~LsL~lp~~~~~~~~~~~~~~p~vsL~~~L~-~f~~~~~~~c~~~~~a~k~~~i~~lP~~L 413 (521)
+-+..+ . .-+...+++ +|... -++|.+||+||
T Consensus 138 -----------------------E~~e~~---------~--~e~~~qL~e~nfl~~-------------gikisrLP~yL 170 (374)
T 2vhf_A 138 -----------------------EKNEKV---------G--VPTIQQLLEWSFINS-------------NLKFAEAPSCL 170 (374)
T ss_dssp -----------------------CCC--C---------C--CCBHHHHHHHHHHHH-------------TEEESSCCSEE
T ss_pred -----------------------Cccccc---------C--CcHHHHhhhHHHHHc-------------CCeeecCCcce
Confidence 100000 0 012222221 12111 13399999999
Q ss_pred EEEEeeEEecCceeeeCCeeEeecCCccccccCCCCCCCC------------------------C---------------
Q 009986 414 ILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPTPK------------------------E--------------- 454 (521)
Q Consensus 414 iihlkRF~~~~~~~~K~~~~V~FP~~~Ldl~~~~~~~~~~------------------------~--------------- 454 (521)
+||+.||. ...||-..|.||+ .||+.+++...... .
T Consensus 171 tVq~vRFg----KkaKIlrkV~fp~-eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~~~~~~~~~ 245 (374)
T 2vhf_A 171 IIQMPRFG----KDFKLFKKIFPSL-ELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLH 245 (374)
T ss_dssp EEECCCCS----SSSSCCCCCBCCS-EECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHHHHHHHTTS
T ss_pred EEeeeccC----ccccccCCCCCcc-hhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccchhhhhhhhh
Confidence 99999993 3349999999997 49998887632100 0
Q ss_pred ------------------------CCCCCceEEEeEEEEEeccCCCCeEEEEEEEC-CCCcEEEEeC
Q 009986 455 ------------------------NEKLRSKYDLIANIVHDGKPEGGFYRVFVQRK-SEELWYEMQD 496 (521)
Q Consensus 455 ------------------------~~~~~~~Y~L~avI~H~G~~~~GHY~a~vk~~-~~~~W~~~nD 496 (521)
+......|+|+|||+ +++|||+||||.. .+++|+.||-
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~g~~psg~yeL~aVlt----adsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 246 PKRLNHKYNPVSLPKDLPDWDWRHGCIPCQNMELFAVLC----IETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp GGGTTCCCEECCC----------------CCEEEEEEEE----EETTEEEEEEECSSSTTCEEEEET
T ss_pred hhhhcccccccccCccccccccccCCCCceeEEEEEEEE----ccCCceEEEEEecCCCCCeEEEec
Confidence 001126799999999 7889999999973 3789999985
No 12
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=99.87 E-value=5.1e-23 Score=174.92 Aligned_cols=91 Identities=21% Similarity=0.347 Sum_probs=85.4
Q ss_pred CCCCCccccccccc-cCCCCcccccccCCCCceEEecccCcccccCCCCCCcccccccCCccEEEEeCCCceEecCCCCc
Q 009986 102 RRDCPYLDTVNRQV-LDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYE 180 (521)
Q Consensus 102 ~~~c~~l~ti~r~~-l~~d~~k~Cs~~ls~~nl~~CL~CG~~~~G~~~~~ha~~H~~~~~H~v~v~l~t~~vyc~~~~~~ 180 (521)
...||||++|++.. .++++.+.|++|++..|+|+||+||+++|||+.++||+.|+.+++|+|+|+++|..||||+|+++
T Consensus 4 ~~~C~Hl~~l~~~~~~~~~~~~~C~~C~~~~~~W~CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~~~~vwCy~cd~~ 83 (109)
T 3c5k_A 4 LPWCPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAY 83 (109)
T ss_dssp BSCCTTGGGCCCCCTTCCCTTCCCTTTCCCSSEEEETTTCCEEECTTTTCHHHHHHHHHCCCEEEETTTCCEEETTTTEE
T ss_pred CCCCcCcccccccCCCCCCcCCcCccccCCCCeeeeeecCccccCCCcChHHHHHhcccCCCEEEECCCCCEEECCCCCE
Confidence 56899999999866 37889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChhhhhhc
Q 009986 181 INDPSLEDIRHV 192 (521)
Q Consensus 181 v~d~~l~di~~~ 192 (521)
|.+++|.+++.+
T Consensus 84 V~~~~L~d~~~~ 95 (109)
T 3c5k_A 84 VHHQALLDVKNI 95 (109)
T ss_dssp BCCGGGHHHHHH
T ss_pred EecccccChHHH
Confidence 999999998753
No 13
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=99.81 E-value=1.7e-21 Score=162.50 Aligned_cols=87 Identities=32% Similarity=0.470 Sum_probs=78.5
Q ss_pred CCCCCccccccccc---cCCCCcccccccC-CCCceEEecc--cCcccccCCCCCCcccccccCCccEEEEeCCCceEec
Q 009986 102 RRDCPYLDTVNRQV---LDFDFEKFCSVSL-SNLNVYACLV--CGKYYQGRGQKSHAYTHSLEAGHHVYINLRTEKVYCL 175 (521)
Q Consensus 102 ~~~c~~l~ti~r~~---l~~d~~k~Cs~~l-s~~nl~~CL~--CG~~~~G~~~~~ha~~H~~~~~H~v~v~l~t~~vyc~ 175 (521)
+..||||+++.+.. +.+++...|+.|. ++.|||+||+ ||.++|||+.++||+.|+.+++|+|+|+++|++||||
T Consensus 3 ~~~C~Hl~~~~~~~~~~~~~~~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~~~t~H~~~~~l~~~~vwCy 82 (97)
T 2uzg_A 3 RNHCPHLDSVGEITKEDLIQKSLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLTTLRVWCY 82 (97)
T ss_dssp CCSCHHHHHSCCCCHHHHHHHTTTCCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHHHHHTTCCEEEETTTTEEEET
T ss_pred CCCCcCcchhcccCcccccCCCCCcCcCcCCCCCCceeeecccCCCcccCCCcChHHHHHhhhcCCcEEEECCCCCEEEC
Confidence 56899999998754 3456778899998 7889999999 9999999999999999999999999999999999999
Q ss_pred CCCCcc-cCCChhh
Q 009986 176 PDGYEI-NDPSLED 188 (521)
Q Consensus 176 ~~~~~v-~d~~l~d 188 (521)
+|+++| .|+.|..
T Consensus 83 ~cdd~V~~d~~L~~ 96 (97)
T 2uzg_A 83 ACSKEVFLDRKLGT 96 (97)
T ss_dssp TTTEEECCCSCCCC
T ss_pred CCCcEeecCccccc
Confidence 999999 6988764
No 14
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=99.78 E-value=4.8e-20 Score=161.01 Aligned_cols=89 Identities=25% Similarity=0.237 Sum_probs=78.9
Q ss_pred CCCCCcccccccc----ccCCCCcccccccCCCCceEEecccCcccccCCC------CCCcccccccCCccEEEEeCC--
Q 009986 102 RRDCPYLDTVNRQ----VLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGQ------KSHAYTHSLEAGHHVYINLRT-- 169 (521)
Q Consensus 102 ~~~c~~l~ti~r~----~l~~d~~k~Cs~~ls~~nl~~CL~CG~~~~G~~~------~~ha~~H~~~~~H~v~v~l~t-- 169 (521)
+..|||+++|.+. .++++..+ |+.|++..|||+||+||.++|||.. ++||+.|+.+++|+|+|+++|
T Consensus 12 ~~~C~h~~~l~q~~~~~~~~~~~~~-C~~C~~~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t~H~l~v~l~t~~ 90 (129)
T 2g45_A 12 RQVSKHAFSLKQLDNPARIPPCGWK-CSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTIT 90 (129)
T ss_dssp CEECTTTTTCCCCSSCCCCCCCBCC-CSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCCEEEETTCCB
T ss_pred CCCCCCcCcccccccccccCCCCCc-CccccCcCceEEeccCCccccCccccCCCCcCcHHHHHhhhcCCCEEEECCCCC
Confidence 4579999999864 46677765 9999999999999999999888854 999999999999999999999
Q ss_pred ---CceEecCCCCcccCCChhhhhh
Q 009986 170 ---EKVYCLPDGYEINDPSLEDIRH 191 (521)
Q Consensus 170 ---~~vyc~~~~~~v~d~~l~di~~ 191 (521)
++||||+|+++|.||.|..+..
T Consensus 91 ~~~~~vwcY~cd~~V~dp~L~~hl~ 115 (129)
T 2g45_A 91 PDGADVYSYDEDDMVLDPSLAEHLS 115 (129)
T ss_dssp TTBCCEEETTTTEEEECTTHHHHHH
T ss_pred CCCCeEEECCCCCEeECccHHHHHH
Confidence 7999999999999999988753
No 15
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=99.59 E-value=3.8e-16 Score=129.97 Aligned_cols=80 Identities=16% Similarity=0.220 Sum_probs=66.7
Q ss_pred CCCCccccccccccCCCCcccccccCCCC----ceEEecccCcccccCC-CCCCcccccccCCccEEEEeC--CCceEec
Q 009986 103 RDCPYLDTVNRQVLDFDFEKFCSVSLSNL----NVYACLVCGKYYQGRG-QKSHAYTHSLEAGHHVYINLR--TEKVYCL 175 (521)
Q Consensus 103 ~~c~~l~ti~r~~l~~d~~k~Cs~~ls~~----nl~~CL~CG~~~~G~~-~~~ha~~H~~~~~H~v~v~l~--t~~vyc~ 175 (521)
..||||..+..... . ...|+.|.... |||+||+||.+.|||+ +++||+.|+.+++|+|.+.+. +..||||
T Consensus 3 ~~C~Hl~~~~~~~p--~-~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r~s~~~HA~~H~~~t~Hpl~~S~~~~~~~vwcY 79 (102)
T 2ida_A 3 MGCRHVAGIRTVTP--S-ALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPPEGWGWCY 79 (102)
T ss_dssp CCCGGGGGCCCCCC--S-SSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSCSCEEEET
T ss_pred CcCcCccccccCCC--C-CCcCccccccCCcchheeeeeEcCCCcccCCCccHHHHHHHhccCCCEEEEEecCCCCEEEc
Confidence 45999998875432 2 45677776654 9999999999999997 899999999999999988776 5789999
Q ss_pred CCCCcccCCC
Q 009986 176 PDGYEINDPS 185 (521)
Q Consensus 176 ~~~~~v~d~~ 185 (521)
.|+++|.+|.
T Consensus 80 ~cd~~V~~p~ 89 (102)
T 2ida_A 80 VDEVMFDLSD 89 (102)
T ss_dssp TTTEEEECTT
T ss_pred CCCcEEECcc
Confidence 9999998763
No 16
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=99.51 E-value=2.7e-15 Score=130.79 Aligned_cols=85 Identities=25% Similarity=0.334 Sum_probs=67.0
Q ss_pred CCCCCcccccc-----ccccCCCCcccccccCC--------------CCceEEecccCcccccCC-CCCCccccccc---
Q 009986 102 RRDCPYLDTVN-----RQVLDFDFEKFCSVSLS--------------NLNVYACLVCGKYYQGRG-QKSHAYTHSLE--- 158 (521)
Q Consensus 102 ~~~c~~l~ti~-----r~~l~~d~~k~Cs~~ls--------------~~nl~~CL~CG~~~~G~~-~~~ha~~H~~~--- 158 (521)
...|||+..+- +..+.......|+.|.. ..|||+||+||.++|||. +++||+.||.+
T Consensus 4 ~~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H~~~~~~ 83 (126)
T 2i50_A 4 MPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLTPRS 83 (126)
T ss_dssp -CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTCTTSSCSSCTTTCCCCCEEEETTTCCEEECTTSSSCHHHHHHHSCCS
T ss_pred CCCCcChhhccccccccccccCCCCCcCccccccccccccccccccccccceeeeeCCccccCCCCcchHHHHHHhCcCC
Confidence 46799998542 11222222234766653 689999999999999996 68999999998
Q ss_pred CCccEEEEeCCCceEecCCCCcccCCCh
Q 009986 159 AGHHVYINLRTEKVYCLPDGYEINDPSL 186 (521)
Q Consensus 159 ~~H~v~v~l~t~~vyc~~~~~~v~d~~l 186 (521)
++|+|+|+++|..||||.|+++|.++..
T Consensus 84 t~H~l~~~l~t~~vwCY~cd~~V~~~~~ 111 (126)
T 2i50_A 84 EPHCLVLSLDNWSVWCYVCDNEVQYCSS 111 (126)
T ss_dssp SCCCEEEETTTCCEEETTTTEEECCCTT
T ss_pred CCCcEEEECCCCeEEeCCCCcEEEcCcc
Confidence 8999999999999999999999998653
No 17
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=96.70 E-value=0.0089 Score=55.80 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=41.8
Q ss_pred CCCCchhhHHHHHHhCchhHHHHhcCcccccCCCChHHHHHHHHHHHHHccCCCCCcCChHHHHHHHHHhcccCCCCCCc
Q 009986 197 IKETDFVNVTIQSLMRVTPLRNFFLIPENYRHCKSPLVHRFGDLTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIGVQ 276 (521)
Q Consensus 197 lGNTCYmNsVLQ~L~~ip~fr~~~l~~~~~~~~~~~l~~~l~~L~~~l~s~~~~~~~vsP~~ll~~i~~~s~~~F~~~~Q 276 (521)
.-|+||+||++-+|=.+.+. +.++..++.. =.|..|...+-.. .....|+-
T Consensus 19 ~dNNCwVNaa~l~LQ~~~~~--------------------~~~aw~~f~~-------Gd~~~fV~~~Ya~--~~~~~G~~ 69 (211)
T 3mp2_A 19 GDNNCWINACCYQLQAFDFF--------------------NNEAWEKFKK-------GDVMDFVNLCYAA--TTLARGHS 69 (211)
T ss_dssp CTTCHHHHHHHHHHTTCTTC--------------------CCHHHHHHTT-------TCCHHHHHHHHHH--HTCCTTSC
T ss_pred cCCCcHHHHHHHHHHhcChh--------------------HHHHHHHHhC-------CChHHHHHHHHHH--cCCCCCCC
Confidence 34899999999888665443 1122223322 2566677766654 35667889
Q ss_pred CCHHHHHHHHHH
Q 009986 277 SNPVEFMSWLLN 288 (521)
Q Consensus 277 qDA~EFl~~LLn 288 (521)
.||.++|..||+
T Consensus 70 gDa~~~L~~Ll~ 81 (211)
T 3mp2_A 70 GDAEYLLELMLN 81 (211)
T ss_dssp CCHHHHHHHHHT
T ss_pred cCHHHHHHHHHH
Confidence 999999999983
No 18
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=96.16 E-value=0.062 Score=53.26 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=28.5
Q ss_pred eEEEEEeccCCCCeEEEEEEECCCCcEEEEeCceeeeeCc
Q 009986 465 IANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVSETLP 504 (521)
Q Consensus 465 ~avI~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~~v~~ 504 (521)
++.++..|+.++|||+.+... ... +.+|-..+.+++.
T Consensus 260 ~~a~vF~G~~~~GHYt~~~~~--~~~-~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 260 LCANEYTGNYQCGHYTHITAK--ETL-YRIDGAHLTKMSE 296 (315)
T ss_dssp SEEEEEESCGGGCEEEEEEES--SSE-EEEETTEEEEESE
T ss_pred EEEEEEECCCCccceEEEecC--Cce-eEEeCCcceeccc
Confidence 445556899999999998874 333 8999999988874
No 19
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=76.41 E-value=0.98 Score=50.85 Aligned_cols=57 Identities=23% Similarity=0.468 Sum_probs=39.1
Q ss_pred ccccccCCCCceEEecccCcccc-cCCC--CCCcccccccCCccE-EEE----eCCCceEecCCCC
Q 009986 122 KFCSVSLSNLNVYACLVCGKYYQ-GRGQ--KSHAYTHSLEAGHHV-YIN----LRTEKVYCLPDGY 179 (521)
Q Consensus 122 k~Cs~~ls~~nl~~CL~CG~~~~-G~~~--~~ha~~H~~~~~H~v-~v~----l~t~~vyc~~~~~ 179 (521)
.-|.+.. ...|-.|++|+|.|| |+|. .||...|...++|.- .+. ++.-.+-||.|+.
T Consensus 15 ~yc~~~~-~~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~ 79 (802)
T 2xzl_A 15 AYCGIDS-AKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGR 79 (802)
T ss_dssp TTTCCCC-TTTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCC
T ss_pred cccCCCC-CceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCCC
Confidence 3344432 367999999999999 4443 689999988777743 333 2234678999864
No 20
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=68.22 E-value=2.3 Score=36.73 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=19.1
Q ss_pred hcCCccCCCCchhhHHHHHHhC
Q 009986 191 HVGLNNIKETDFVNVTIQSLMR 212 (521)
Q Consensus 191 ~~GL~NlGNTCYmNsVLQ~L~~ 212 (521)
+.|+.|--++|++|++||...-
T Consensus 13 fys~pN~hdncWLNtilQLfry 34 (167)
T 1qmy_A 13 FYSRPNNHDNAWLNAILQLFRY 34 (167)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHH
T ss_pred cccCCCCCcchHHHHHHHHHHH
Confidence 3489999999999999998754
No 21
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=64.68 E-value=2.3 Score=47.83 Aligned_cols=49 Identities=24% Similarity=0.366 Sum_probs=35.1
Q ss_pred CceEEecccCcccc-cCC--CCCCcccccccCCccE-EEEeC----CCceEecCCCC
Q 009986 131 LNVYACLVCGKYYQ-GRG--QKSHAYTHSLEAGHHV-YINLR----TEKVYCLPDGY 179 (521)
Q Consensus 131 ~nl~~CL~CG~~~~-G~~--~~~ha~~H~~~~~H~v-~v~l~----t~~vyc~~~~~ 179 (521)
..|-.|+.|+|.|| |+| ..||...|...+.|.- .+.-. .-.+=||.|+.
T Consensus 18 ~~~~~~~~~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~~~~~~~~~ec~~c~~ 74 (800)
T 2wjy_A 18 ACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGC 74 (800)
T ss_dssp GGEEEETTTTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTTSTTCSCBCCCTTTCC
T ss_pred CeEEEcCCCCCccccCCCCCcccHHHHHHHHccCceEecCCCCCCCCceEEEeccCC
Confidence 57999999999999 444 3689999988777743 33222 24667888864
No 22
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=57.27 E-value=4.9 Score=45.44 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=30.3
Q ss_pred CCCCceEEecccCcccccCCCCCCcccccccCCccEEEEeC
Q 009986 128 LSNLNVYACLVCGKYYQGRGQKSHAYTHSLEAGHHVYINLR 168 (521)
Q Consensus 128 ls~~nl~~CL~CG~~~~G~~~~~ha~~H~~~~~H~v~v~l~ 168 (521)
.+..-||+||.|-.-|| ..|+..|+..++|++|+|+.
T Consensus 57 ~~~~gl~vcl~~f~~~~----~~~~~~~~~~~~~~~~l~i~ 93 (854)
T 3ihp_A 57 ESEGGLYICMNTFLGFG----KQYVERHFNKTGQRVYLHLR 93 (854)
T ss_dssp TSTTCEEEETTTCCEEC----TTTHHHHHHHHCCCEEEEEE
T ss_pred CCCCCeEEccccccccc----HHHHHHHHhccCCceEEEEE
Confidence 35568999999965554 27999999999999999864
No 23
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=34.49 E-value=8.3 Score=35.86 Aligned_cols=29 Identities=21% Similarity=0.455 Sum_probs=0.0
Q ss_pred eEEecccCcccccCCCCCCcccccccCCccEE
Q 009986 133 VYACLVCGKYYQGRGQKSHAYTHSLEAGHHVY 164 (521)
Q Consensus 133 l~~CL~CG~~~~G~~~~~ha~~H~~~~~H~v~ 164 (521)
...|.+||+.+.|- .-|..|+.+++|.=|
T Consensus 180 ~l~C~~C~~~~~g~---~~a~~ha~~tgH~~f 208 (212)
T 3by4_A 180 QIKCNTCQMTFVGE---REVARHAESTGHVDF 208 (212)
T ss_dssp --------------------------------
T ss_pred EEEcccCCCcccCH---HHHHHHHHHhCCCCC
Confidence 45699999888774 568999999999644
No 24
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=36.89 E-value=10 Score=21.03 Aligned_cols=14 Identities=36% Similarity=0.826 Sum_probs=10.4
Q ss_pred eEEecccCcccccC
Q 009986 133 VYACLVCGKYYQGR 146 (521)
Q Consensus 133 l~~CL~CG~~~~G~ 146 (521)
.|.|-.||+.|...
T Consensus 2 p~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 2 PYVCERCGKRFVQS 15 (26)
Confidence 47788999877644
No 25
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=29.97 E-value=11 Score=26.05 Aligned_cols=13 Identities=38% Similarity=0.759 Sum_probs=8.3
Q ss_pred ceEEecccCcccc
Q 009986 132 NVYACLVCGKYYQ 144 (521)
Q Consensus 132 nl~~CL~CG~~~~ 144 (521)
.+|.|+.||+.|.
T Consensus 2 ~iY~C~rCg~~fs 14 (48)
T 4ayb_P 2 AVYRCGKCWKTFT 14 (48)
T ss_dssp ---CCCCTTTTCC
T ss_pred cEEEeeccCCCcc
Confidence 3799999997764
No 26
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=25.34 E-value=55 Score=29.75 Aligned_cols=31 Identities=10% Similarity=0.179 Sum_probs=24.9
Q ss_pred EeEEEEEeccCCCCeEEEEEEECCCCcEEEEeCceee
Q 009986 464 LIANIVHDGKPEGGFYRVFVQRKSEELWYEMQDLHVS 500 (521)
Q Consensus 464 L~avI~H~G~~~~GHY~a~vk~~~~~~W~~~nD~~V~ 500 (521)
..|+|++.. -||+|..|- +|.||-+|=..-.
T Consensus 110 ~~~FI~N~~----~HWfaiRki--gg~WyNLdS~l~~ 140 (191)
T 3o65_A 110 ERSFICNYK----QHWFTIRKF--GKHWFNLNSLLAG 140 (191)
T ss_dssp CCEEEEEES----SCEEEEEEE--TTEEEECCTTSSS
T ss_pred hhhhhhccc----cceeeEEec--CCEEEEccCCCCC
Confidence 457888874 899999888 8999999876433
No 27
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=25.21 E-value=27 Score=21.98 Aligned_cols=13 Identities=31% Similarity=0.442 Sum_probs=10.2
Q ss_pred CHHHHHHHHHHHH
Q 009986 278 NPVEFMSWLLNTL 290 (521)
Q Consensus 278 DA~EFl~~LLn~L 290 (521)
=|++|+.||++.-
T Consensus 10 aakdFv~WL~ngk 22 (31)
T 3c5t_B 10 AVRLFIEWLKNGG 22 (31)
T ss_dssp HHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCC
Confidence 3789999998753
No 28
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=31.08 E-value=15 Score=20.86 Aligned_cols=23 Identities=26% Similarity=0.651 Sum_probs=13.7
Q ss_pred eEEecccCcccccCCC-CCCcccc
Q 009986 133 VYACLVCGKYYQGRGQ-KSHAYTH 155 (521)
Q Consensus 133 l~~CL~CG~~~~G~~~-~~ha~~H 155 (521)
.|.|-.||+.|...+. ..|...|
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~H 25 (29)
T 2lvt_A 2 PCQCVMCGKAFTQASSLIAHVRQH 25 (29)
Confidence 3678899988765432 3344333
No 29
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=24.97 E-value=41 Score=24.95 Aligned_cols=14 Identities=29% Similarity=0.838 Sum_probs=11.8
Q ss_pred eEEecccCcccccCC
Q 009986 133 VYACLVCGKYYQGRG 147 (521)
Q Consensus 133 l~~CL~CG~~~~G~~ 147 (521)
.+-| .||..||+.-
T Consensus 29 ~f~C-rCg~~FC~~H 42 (64)
T 1wg2_A 29 GFKC-KCGSTFCGSH 42 (64)
T ss_dssp CEEC-TTSCEECSSS
T ss_pred CeEe-ecCCEecccC
Confidence 5899 8999999863
No 30
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=29.71 E-value=16 Score=20.70 Aligned_cols=15 Identities=27% Similarity=0.902 Sum_probs=11.0
Q ss_pred eEEecccCcccccCC
Q 009986 133 VYACLVCGKYYQGRG 147 (521)
Q Consensus 133 l~~CL~CG~~~~G~~ 147 (521)
.|.|-.||+.|...+
T Consensus 3 ~~~C~~C~k~f~~~~ 17 (30)
T 2lvr_A 3 PYVCIHCQRQFADPG 17 (30)
Confidence 478899998876543
No 31
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=23.55 E-value=37 Score=20.47 Aligned_cols=14 Identities=14% Similarity=0.444 Sum_probs=11.2
Q ss_pred EEEEECCCCcEEEEeC
Q 009986 481 VFVQRKSEELWYEMQD 496 (521)
Q Consensus 481 a~vk~~~~~~W~~~nD 496 (521)
+|+|. +|.|+...+
T Consensus 12 ~Yvr~--dg~WV~l~t 25 (27)
T 2ww6_A 12 AYVRK--FGEWVLLST 25 (27)
T ss_dssp EEEEE--TTEEEEGGG
T ss_pred eeEEE--cCeEEEccc
Confidence 67888 899997654
No 32
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.40 E-value=49 Score=24.51 Aligned_cols=14 Identities=29% Similarity=0.824 Sum_probs=11.6
Q ss_pred eEEecccCcccccCC
Q 009986 133 VYACLVCGKYYQGRG 147 (521)
Q Consensus 133 l~~CL~CG~~~~G~~ 147 (521)
-+-| .||..||+.-
T Consensus 29 ~f~C-rCg~~FC~~H 42 (64)
T 1wfh_A 29 GFMC-RCGTTFCGSH 42 (64)
T ss_dssp CEEC-SSSCEECTTT
T ss_pred CEEe-ecCCEecccc
Confidence 4889 7999999863
No 33
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=22.31 E-value=31 Score=22.08 Aligned_cols=17 Identities=29% Similarity=0.692 Sum_probs=13.5
Q ss_pred CCCCceEEecccCcccc
Q 009986 128 LSNLNVYACLVCGKYYQ 144 (521)
Q Consensus 128 ls~~nl~~CL~CG~~~~ 144 (521)
+.....|.|-+|||.|-
T Consensus 3 ~~gekp~~C~~CgK~F~ 19 (36)
T 1fv5_A 3 LLKPARFMCLPCGIAFS 19 (36)
T ss_dssp SSSCCCCEETTTTEECS
T ss_pred CCCccCeECCCCCCccC
Confidence 44567899999998875
No 34
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=20.94 E-value=33 Score=23.66 Aligned_cols=13 Identities=46% Similarity=1.045 Sum_probs=11.0
Q ss_pred ceEEecccCcccc
Q 009986 132 NVYACLVCGKYYQ 144 (521)
Q Consensus 132 nl~~CL~CG~~~~ 144 (521)
..|.|.+||.+|.
T Consensus 3 ~~y~C~vCGyvyd 15 (46)
T 6rxn_A 3 QKYVCNVCGYEYD 15 (46)
T ss_dssp CCEEETTTCCEEC
T ss_pred CEEECCCCCeEEe
Confidence 4799999998776
Done!