Query 009987
Match_columns 521
No_of_seqs 461 out of 2500
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 19:42:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1731 FAD-dependent sulfhydr 100.0 2.8E-95 6E-100 752.8 24.5 446 43-515 36-604 (606)
2 PF04777 Evr1_Alr: Erv1 / Alr 100.0 3E-29 6.5E-34 211.8 3.6 92 314-409 1-95 (95)
3 KOG3355 Mitochondrial sulfhydr 99.8 9.9E-22 2.1E-26 175.6 6.7 88 315-402 76-166 (177)
4 cd03006 PDI_a_EFP1_N PDIa fami 99.8 2.7E-20 5.9E-25 161.8 11.4 106 43-170 6-113 (113)
5 COG5054 ERV1 Mitochondrial sul 99.8 2.8E-20 6.1E-25 165.4 8.0 87 315-401 85-174 (181)
6 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 1.6E-19 3.4E-24 153.8 11.8 99 47-169 2-100 (101)
7 KOG0190 Protein disulfide isom 99.8 2.2E-19 4.7E-24 188.9 10.0 114 44-178 23-136 (493)
8 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 7.4E-19 1.6E-23 150.3 11.0 102 47-170 2-104 (104)
9 PF00085 Thioredoxin: Thioredo 99.8 1.3E-18 2.9E-23 147.5 11.9 103 48-173 1-103 (103)
10 cd02996 PDI_a_ERp44 PDIa famil 99.8 1.1E-18 2.5E-23 150.4 11.5 107 47-170 2-108 (108)
11 cd03002 PDI_a_MPD1_like PDI fa 99.8 1.6E-18 3.6E-23 149.2 11.9 107 48-170 2-108 (109)
12 PTZ00443 Thioredoxin domain-co 99.8 6.7E-18 1.5E-22 163.6 14.0 110 45-176 29-141 (224)
13 KOG0910 Thioredoxin-like prote 99.8 1.9E-18 4.1E-23 153.9 9.3 106 47-175 44-149 (150)
14 cd02994 PDI_a_TMX PDIa family, 99.8 4.8E-18 1E-22 144.5 11.2 100 47-172 2-101 (101)
15 cd03007 PDI_a_ERp29_N PDIa fam 99.7 5.1E-18 1.1E-22 147.2 10.2 103 47-173 2-115 (116)
16 cd03065 PDI_b_Calsequestrin_N 99.7 7.5E-18 1.6E-22 147.7 10.3 108 45-174 8-119 (120)
17 cd02999 PDI_a_ERp44_like PDIa 99.7 1.2E-17 2.6E-22 142.3 9.7 94 54-170 7-100 (100)
18 cd03005 PDI_a_ERp46 PDIa famil 99.7 1.5E-17 3.2E-22 141.2 10.3 101 48-170 2-102 (102)
19 cd02992 PDI_a_QSOX PDIa family 99.7 3.6E-17 7.8E-22 142.8 12.4 88 47-139 2-89 (114)
20 cd02956 ybbN ybbN protein fami 99.7 2.5E-17 5.4E-22 138.6 10.9 96 54-171 1-96 (96)
21 COG3118 Thioredoxin domain-con 99.7 3.1E-17 6.8E-22 160.8 12.0 111 44-176 21-132 (304)
22 cd03001 PDI_a_P5 PDIa family, 99.7 5E-17 1.1E-21 138.2 11.7 101 48-170 2-102 (103)
23 cd02993 PDI_a_APS_reductase PD 99.7 5E-17 1.1E-21 140.6 11.1 105 47-170 2-109 (109)
24 cd02962 TMX2 TMX2 family; comp 99.7 6.2E-17 1.4E-21 147.8 11.9 89 45-141 27-121 (152)
25 cd02963 TRX_DnaJ TRX domain, D 99.7 4.2E-17 9.2E-22 141.6 9.5 102 50-172 8-110 (111)
26 cd02997 PDI_a_PDIR PDIa family 99.7 6.9E-17 1.5E-21 137.5 10.5 103 48-170 2-104 (104)
27 PTZ00102 disulphide isomerase; 99.7 1.4E-16 3.1E-21 172.2 15.5 112 45-178 31-142 (477)
28 PRK09381 trxA thioredoxin; Pro 99.7 1.3E-16 2.8E-21 137.7 11.9 107 45-174 2-108 (109)
29 cd02954 DIM1 Dim1 family; Dim1 99.7 5.6E-17 1.2E-21 140.2 8.4 80 53-141 2-81 (114)
30 KOG0190 Protein disulfide isom 99.7 4.8E-17 1E-21 171.3 9.3 124 31-175 349-474 (493)
31 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 2.3E-16 4.9E-21 134.2 10.7 104 47-170 1-104 (104)
32 cd02985 TRX_CDSP32 TRX family, 99.7 2.1E-16 4.7E-21 135.3 10.4 98 52-171 2-100 (103)
33 PHA02278 thioredoxin-like prot 99.7 1.7E-16 3.7E-21 135.7 9.7 95 53-169 4-100 (103)
34 TIGR01126 pdi_dom protein disu 99.7 3.5E-16 7.5E-21 132.4 11.3 102 51-174 1-102 (102)
35 PRK10996 thioredoxin 2; Provis 99.7 7.5E-16 1.6E-20 139.2 12.0 106 45-174 34-139 (139)
36 cd02998 PDI_a_ERp38 PDIa famil 99.7 7E-16 1.5E-20 131.2 11.1 103 48-170 2-105 (105)
37 TIGR00424 APS_reduc 5'-adenyly 99.6 7.4E-16 1.6E-20 163.3 12.6 111 44-172 349-461 (463)
38 cd02948 TRX_NDPK TRX domain, T 99.6 1E-15 2.3E-20 130.7 10.9 97 51-172 5-101 (102)
39 cd03000 PDI_a_TMX3 PDIa family 99.6 2.1E-15 4.5E-20 129.1 10.8 97 54-173 7-103 (104)
40 KOG0907 Thioredoxin [Posttrans 99.6 2.7E-15 5.8E-20 128.7 9.4 90 59-172 15-104 (106)
41 PLN02309 5'-adenylylsulfate re 99.6 4.3E-15 9.4E-20 157.5 12.4 111 44-173 343-456 (457)
42 TIGR01068 thioredoxin thioredo 99.6 7.9E-15 1.7E-19 123.6 11.1 101 51-174 1-101 (101)
43 PLN00410 U5 snRNP protein, DIM 99.6 7E-15 1.5E-19 132.0 11.0 102 52-174 10-120 (142)
44 cd02961 PDI_a_family Protein D 99.6 1.1E-14 2.3E-19 122.1 10.6 100 50-170 2-101 (101)
45 TIGR01130 ER_PDI_fam protein d 99.6 7.8E-15 1.7E-19 157.5 12.3 112 47-178 2-113 (462)
46 cd02957 Phd_like Phosducin (Ph 99.6 6.8E-15 1.5E-19 128.1 9.5 84 47-141 5-89 (113)
47 cd02950 TxlA TRX-like protein 99.6 1.5E-14 3.3E-19 131.1 12.1 102 53-176 10-112 (142)
48 cd02965 HyaE HyaE family; HyaE 99.6 8.5E-15 1.8E-19 125.9 9.8 97 47-167 11-109 (111)
49 KOG4277 Uncharacterized conser 99.6 3.4E-15 7.4E-20 144.9 7.1 92 65-176 43-134 (468)
50 cd02984 TRX_PICOT TRX domain, 99.6 2E-14 4.4E-19 120.9 9.9 79 53-140 2-80 (97)
51 cd02953 DsbDgamma DsbD gamma f 99.6 2.2E-14 4.8E-19 122.7 10.1 95 54-170 2-103 (104)
52 PTZ00102 disulphide isomerase; 99.5 2.8E-14 6.1E-19 154.3 12.1 120 37-176 347-467 (477)
53 cd02986 DLP Dim1 family, Dim1- 99.5 2.7E-14 5.9E-19 122.7 9.4 77 54-139 3-79 (114)
54 cd02989 Phd_like_TxnDC9 Phosdu 99.5 4E-14 8.6E-19 123.3 10.2 82 48-141 6-88 (113)
55 KOG0912 Thiol-disulfide isomer 99.5 2E-14 4.3E-19 140.1 8.9 109 51-177 1-109 (375)
56 KOG0908 Thioredoxin-like prote 99.5 9.8E-14 2.1E-18 132.1 9.0 103 52-178 8-110 (288)
57 cd02949 TRX_NTR TRX domain, no 99.5 2.8E-13 6E-18 114.5 10.2 93 56-171 5-97 (97)
58 PTZ00051 thioredoxin; Provisio 99.5 2.7E-13 5.9E-18 114.3 9.3 77 53-141 8-84 (98)
59 cd02987 Phd_like_Phd Phosducin 99.5 3.8E-13 8.3E-18 126.1 10.7 110 45-172 61-173 (175)
60 TIGR01130 ER_PDI_fam protein d 99.4 8.9E-13 1.9E-17 141.6 12.2 114 45-178 345-458 (462)
61 cd02975 PfPDO_like_N Pyrococcu 99.4 1.8E-12 3.8E-17 113.0 10.1 97 56-175 15-111 (113)
62 cd02947 TRX_family TRX family; 99.4 2.4E-12 5.3E-17 105.5 9.9 92 54-170 1-92 (93)
63 KOG0191 Thioredoxin/protein di 99.4 2.2E-12 4.9E-17 135.9 10.3 106 50-178 33-138 (383)
64 TIGR01295 PedC_BrcD bacterioci 99.4 3.9E-12 8.4E-17 112.3 9.8 99 48-170 8-120 (122)
65 cd02951 SoxW SoxW family; SoxW 99.3 4.9E-12 1.1E-16 111.9 10.1 102 55-175 5-120 (125)
66 cd02952 TRP14_like Human TRX-r 99.3 3.9E-12 8.5E-17 111.3 8.5 80 52-138 8-100 (119)
67 cd02988 Phd_like_VIAF Phosduci 99.3 9.2E-12 2E-16 118.4 10.5 108 45-172 81-190 (192)
68 PRK03147 thiol-disulfide oxido 99.3 3.4E-11 7.4E-16 112.2 13.5 105 47-172 45-170 (173)
69 KOG0191 Thioredoxin/protein di 99.3 1E-11 2.2E-16 130.9 10.6 111 47-177 145-255 (383)
70 PRK15412 thiol:disulfide inter 99.3 3.8E-11 8.2E-16 113.8 12.8 89 64-175 67-177 (185)
71 TIGR00411 redox_disulf_1 small 99.3 3.2E-11 6.9E-16 98.1 9.6 80 68-173 2-81 (82)
72 PRK14018 trifunctional thiored 99.3 3.9E-11 8.4E-16 129.2 13.0 90 64-172 55-171 (521)
73 cd02982 PDI_b'_family Protein 99.2 4.6E-11 1E-15 101.5 10.2 89 65-173 12-102 (103)
74 TIGR02738 TrbB type-F conjugat 99.2 2.5E-10 5.3E-15 104.7 12.1 87 66-173 51-152 (153)
75 TIGR02187 GlrX_arch Glutaredox 99.2 1.2E-10 2.5E-15 113.1 9.8 90 66-175 20-112 (215)
76 cd02959 ERp19 Endoplasmic reti 99.2 6E-11 1.3E-15 104.0 6.8 70 64-141 18-90 (117)
77 cd03009 TryX_like_TryX_NRX Try 99.1 3.2E-10 6.8E-15 101.0 9.1 75 63-141 16-113 (131)
78 PRK00293 dipZ thiol:disulfide 99.1 3.4E-10 7.3E-15 124.8 10.9 103 52-173 459-569 (571)
79 PTZ00062 glutaredoxin; Provisi 99.1 4.2E-10 9.1E-15 107.6 9.4 91 52-175 5-95 (204)
80 PRK13728 conjugal transfer pro 99.1 9E-10 2E-14 103.0 11.3 87 69-176 73-173 (181)
81 TIGR00385 dsbE periplasmic pro 99.1 8.6E-10 1.9E-14 103.3 11.1 88 65-175 63-172 (173)
82 cd03008 TryX_like_RdCVF Trypar 99.1 6.5E-10 1.4E-14 100.9 8.9 80 62-141 22-126 (146)
83 cd03010 TlpA_like_DsbE TlpA-li 99.0 6.5E-10 1.4E-14 98.3 8.4 81 64-166 24-126 (127)
84 PF13098 Thioredoxin_2: Thiore 99.0 3.9E-10 8.4E-15 97.4 6.5 90 64-170 4-112 (112)
85 TIGR02740 TraF-like TraF-like 99.0 1.2E-09 2.6E-14 109.6 10.6 97 58-175 159-265 (271)
86 cd02964 TryX_like_family Trypa 99.0 1.1E-09 2.3E-14 97.9 8.8 77 61-141 13-113 (132)
87 TIGR02187 GlrX_arch Glutaredox 99.0 1.8E-09 3.8E-14 104.9 10.4 83 64-172 132-214 (215)
88 PF13905 Thioredoxin_8: Thiore 99.0 2.1E-09 4.6E-14 89.9 9.2 67 65-136 1-90 (95)
89 TIGR00412 redox_disulf_2 small 99.0 1.8E-09 3.8E-14 87.2 8.0 56 69-138 2-57 (76)
90 PHA02125 thioredoxin-like prot 99.0 1.6E-09 3.4E-14 87.2 7.1 50 69-133 2-51 (75)
91 cd03011 TlpA_like_ScsD_MtbDsbE 98.9 7.5E-09 1.6E-13 90.8 9.0 97 48-168 5-120 (123)
92 cd02973 TRX_GRX_like Thioredox 98.9 5.8E-09 1.3E-13 81.6 6.9 57 68-134 2-58 (67)
93 cd02955 SSP411 TRX domain, SSP 98.8 1.4E-08 3E-13 89.8 8.8 79 52-141 4-94 (124)
94 TIGR01626 ytfJ_HI0045 conserve 98.8 2.8E-08 6E-13 93.5 10.7 89 62-168 56-174 (184)
95 PLN02919 haloacid dehalogenase 98.8 1.7E-08 3.7E-13 118.6 10.6 93 64-175 419-537 (1057)
96 cd02967 mauD Methylamine utili 98.8 1.6E-08 3.6E-13 87.4 7.1 62 65-133 21-83 (114)
97 cd03012 TlpA_like_DipZ_like Tl 98.8 2.8E-08 6E-13 88.0 8.5 71 64-140 22-118 (126)
98 KOG0913 Thiol-disulfide isomer 98.8 2.4E-09 5.2E-14 101.7 1.4 101 47-173 25-125 (248)
99 COG4232 Thiol:disulfide interc 98.7 8.8E-08 1.9E-12 102.7 12.7 107 49-173 457-567 (569)
100 KOG0914 Thioredoxin-like prote 98.7 3.3E-08 7.1E-13 92.8 8.1 90 44-141 122-218 (265)
101 cd02958 UAS UAS family; UAS is 98.7 8.6E-08 1.9E-12 83.4 10.1 103 54-174 4-111 (114)
102 PTZ00056 glutathione peroxidas 98.7 4.7E-08 1E-12 93.7 9.0 76 48-132 24-108 (199)
103 cd02966 TlpA_like_family TlpA- 98.7 6.5E-08 1.4E-12 82.2 8.3 69 65-139 19-109 (116)
104 PLN02399 phospholipid hydroper 98.7 7.8E-08 1.7E-12 94.2 9.8 119 48-175 84-235 (236)
105 cd03026 AhpF_NTD_C TRX-GRX-lik 98.6 1.7E-07 3.8E-12 77.9 9.1 65 60-134 7-71 (89)
106 PRK11509 hydrogenase-1 operon 98.6 2.5E-07 5.4E-12 82.1 10.3 106 48-177 19-127 (132)
107 PF08534 Redoxin: Redoxin; In 98.6 1.5E-07 3.3E-12 85.1 8.8 83 51-141 16-128 (146)
108 TIGR02661 MauD methylamine deh 98.6 4.5E-07 9.7E-12 86.3 12.0 70 64-140 73-159 (189)
109 PLN02412 probable glutathione 98.5 3.7E-07 8E-12 85.1 8.8 105 64-175 28-165 (167)
110 PF13899 Thioredoxin_7: Thiore 98.5 2.3E-07 5.1E-12 75.7 6.4 62 65-136 17-81 (82)
111 cd00340 GSH_Peroxidase Glutath 98.5 3.5E-07 7.6E-12 83.7 8.0 62 63-132 20-91 (152)
112 TIGR02540 gpx7 putative glutat 98.5 8.3E-07 1.8E-11 81.3 9.8 46 61-112 18-63 (153)
113 smart00594 UAS UAS domain. 98.5 8.7E-07 1.9E-11 78.2 9.4 104 53-170 13-121 (122)
114 PTZ00256 glutathione peroxidas 98.4 1.2E-06 2.6E-11 82.8 9.9 58 48-113 25-83 (183)
115 cd02969 PRX_like1 Peroxiredoxi 98.3 3.6E-06 7.9E-11 78.4 10.4 102 64-175 24-153 (171)
116 COG0526 TrxA Thiol-disulfide i 98.3 4E-06 8.6E-11 70.5 8.9 66 65-138 32-99 (127)
117 cd02960 AGR Anterior Gradient 98.2 2.6E-06 5.5E-11 75.6 7.0 72 55-137 11-88 (130)
118 KOG2603 Oligosaccharyltransfer 98.2 1.6E-05 3.4E-10 79.0 13.1 124 44-176 38-168 (331)
119 KOG2501 Thioredoxin, nucleored 98.2 3E-06 6.5E-11 76.8 6.5 70 65-138 33-126 (157)
120 PF00578 AhpC-TSA: AhpC/TSA fa 98.2 6E-06 1.3E-10 72.1 8.1 67 64-136 24-116 (124)
121 cd03017 PRX_BCP Peroxiredoxin 98.2 5.3E-06 1.1E-10 74.2 7.4 70 65-140 23-122 (140)
122 PRK00522 tpx lipid hydroperoxi 98.1 6.9E-06 1.5E-10 76.5 8.1 44 62-113 41-85 (167)
123 cd01659 TRX_superfamily Thiore 98.1 7.5E-06 1.6E-10 60.9 6.9 60 69-138 1-63 (69)
124 TIGR02196 GlrX_YruB Glutaredox 98.1 9.6E-06 2.1E-10 63.6 6.9 54 69-135 2-57 (74)
125 TIGR03137 AhpC peroxiredoxin. 98.1 1.3E-05 2.8E-10 76.1 8.4 93 64-171 30-153 (187)
126 PF13728 TraF: F plasmid trans 98.0 1.9E-05 4.1E-10 76.6 9.2 93 58-170 113-214 (215)
127 cd03015 PRX_Typ2cys Peroxiredo 98.0 2.1E-05 4.6E-10 73.5 8.7 43 64-112 28-71 (173)
128 cd02970 PRX_like2 Peroxiredoxi 98.0 3.1E-05 6.6E-10 69.8 8.8 42 66-113 25-66 (149)
129 PRK10606 btuE putative glutath 98.0 1.2E-05 2.6E-10 75.9 6.1 75 48-132 10-94 (183)
130 PRK10382 alkyl hydroperoxide r 98.0 3.4E-05 7.3E-10 73.3 9.1 96 62-172 28-154 (187)
131 PRK09437 bcp thioredoxin-depen 97.9 2.5E-05 5.4E-10 71.4 7.5 43 64-112 29-72 (154)
132 PRK13190 putative peroxiredoxi 97.9 3.3E-05 7.2E-10 74.2 8.4 96 64-174 26-154 (202)
133 PRK15000 peroxidase; Provision 97.8 6.5E-05 1.4E-09 72.1 8.6 94 64-172 33-160 (200)
134 TIGR02200 GlrX_actino Glutared 97.8 3.3E-05 7.2E-10 61.4 5.5 54 69-138 2-60 (77)
135 cd02991 UAS_ETEA UAS family, E 97.8 0.00014 3E-09 63.6 8.9 104 55-175 5-114 (116)
136 TIGR02739 TraF type-F conjugat 97.8 0.00012 2.6E-09 72.5 9.3 96 59-174 144-248 (256)
137 COG2143 Thioredoxin-related pr 97.8 0.00056 1.2E-08 61.6 12.6 87 64-170 41-145 (182)
138 PF13192 Thioredoxin_3: Thiore 97.8 0.00014 3.1E-09 58.4 8.1 73 70-171 3-76 (76)
139 PF01216 Calsequestrin: Calseq 97.7 0.00018 4E-09 72.6 9.6 111 44-178 32-148 (383)
140 cd03018 PRX_AhpE_like Peroxire 97.7 0.00012 2.6E-09 66.2 7.8 41 66-112 29-70 (149)
141 cd03014 PRX_Atyp2cys Peroxired 97.7 9.6E-05 2.1E-09 66.5 6.5 59 64-130 25-85 (143)
142 cd02971 PRX_family Peroxiredox 97.7 0.0001 2.2E-09 65.8 6.5 43 64-112 21-64 (140)
143 PF07912 ERp29_N: ERp29, N-ter 97.6 0.00097 2.1E-08 57.9 11.8 113 47-180 5-125 (126)
144 PRK13599 putative peroxiredoxi 97.6 0.00019 4.2E-09 69.6 7.7 93 65-172 28-154 (215)
145 PF06110 DUF953: Eukaryotic pr 97.6 0.00036 7.7E-09 61.1 8.5 78 54-138 6-99 (119)
146 PRK13703 conjugal pilus assemb 97.6 0.00026 5.6E-09 69.8 8.3 95 59-173 137-240 (248)
147 TIGR02180 GRX_euk Glutaredoxin 97.6 0.00014 3.1E-09 58.8 5.5 57 69-134 1-60 (84)
148 PTZ00137 2-Cys peroxiredoxin; 97.5 0.00038 8.3E-09 69.3 9.0 93 65-172 98-223 (261)
149 PF02114 Phosducin: Phosducin; 97.5 0.0002 4.4E-09 71.5 7.0 111 46-173 125-237 (265)
150 cd03016 PRX_1cys Peroxiredoxin 97.5 0.00039 8.5E-09 66.9 8.7 92 67-173 28-153 (203)
151 PRK13191 putative peroxiredoxi 97.5 0.00041 8.9E-09 67.3 8.3 94 65-173 33-160 (215)
152 PRK13189 peroxiredoxin; Provis 97.5 0.00044 9.6E-09 67.5 8.5 94 65-173 35-162 (222)
153 PRK11200 grxA glutaredoxin 1; 97.4 0.0007 1.5E-08 55.5 8.0 79 68-175 2-84 (85)
154 KOG3425 Uncharacterized conser 97.4 0.00032 6.9E-09 60.4 5.6 76 54-136 13-103 (128)
155 PTZ00253 tryparedoxin peroxida 97.4 0.00066 1.4E-08 65.1 8.6 94 64-172 35-162 (199)
156 PF14595 Thioredoxin_9: Thiore 97.4 0.0006 1.3E-08 60.7 7.4 69 59-137 35-106 (129)
157 cd02968 SCO SCO (an acronym fo 97.3 0.00035 7.6E-09 62.5 5.8 47 64-113 21-68 (142)
158 PRK10877 protein disulfide iso 97.3 0.0009 1.9E-08 65.8 8.8 85 64-173 106-230 (232)
159 cd03023 DsbA_Com1_like DsbA fa 97.3 0.0016 3.4E-08 58.7 9.3 30 65-94 5-34 (154)
160 cd03020 DsbA_DsbC_DsbG DsbA fa 97.2 0.00079 1.7E-08 64.3 6.6 25 65-89 77-101 (197)
161 PF13848 Thioredoxin_6: Thiore 97.1 0.0046 9.9E-08 57.6 10.3 108 44-172 75-184 (184)
162 cd02981 PDI_b_family Protein D 96.9 0.008 1.7E-07 50.1 9.7 88 55-172 9-96 (97)
163 PF03190 Thioredox_DsbH: Prote 96.9 0.0026 5.7E-08 58.6 6.5 78 51-139 25-114 (163)
164 PF13462 Thioredoxin_4: Thiore 96.8 0.0089 1.9E-07 54.5 9.8 44 64-112 11-54 (162)
165 TIGR02183 GRXA Glutaredoxin, G 96.8 0.0047 1E-07 50.8 7.1 58 69-134 2-63 (86)
166 TIGR03143 AhpF_homolog putativ 96.7 0.005 1.1E-07 68.3 8.9 78 66-170 476-554 (555)
167 cd03067 PDI_b_PDIR_N PDIb fami 96.7 0.012 2.6E-07 49.3 8.4 97 53-172 9-110 (112)
168 KOG3414 Component of the U4/U6 96.6 0.012 2.5E-07 51.3 8.1 78 53-139 11-88 (142)
169 cd03419 GRX_GRXh_1_2_like Glut 96.5 0.0031 6.8E-08 50.7 4.2 55 69-134 2-59 (82)
170 PF00462 Glutaredoxin: Glutare 96.5 0.0094 2E-07 45.2 6.4 53 69-134 1-55 (60)
171 cd02976 NrdH NrdH-redoxin (Nrd 96.5 0.0065 1.4E-07 47.1 5.7 53 69-134 2-56 (73)
172 PRK15317 alkyl hydroperoxide r 96.5 0.01 2.3E-07 65.2 9.3 89 60-175 111-199 (517)
173 PRK11657 dsbG disulfide isomer 96.4 0.017 3.6E-07 57.5 9.6 84 65-171 117-249 (251)
174 KOG0911 Glutaredoxin-related p 96.3 0.0044 9.5E-08 59.4 4.4 65 64-138 16-80 (227)
175 cd02972 DsbA_family DsbA famil 96.2 0.02 4.3E-07 46.7 7.1 60 69-135 1-90 (98)
176 PF02966 DIM1: Mitosis protein 96.1 0.031 6.8E-07 49.3 8.2 76 53-138 8-84 (133)
177 KOG1672 ATP binding protein [P 96.1 0.0072 1.6E-07 56.6 4.5 77 53-141 74-150 (211)
178 cd03072 PDI_b'_ERp44 PDIb' fam 95.8 0.14 3E-06 44.3 11.0 104 48-175 1-109 (111)
179 cd02066 GRX_family Glutaredoxi 95.6 0.031 6.7E-07 42.9 5.6 53 69-134 2-56 (72)
180 TIGR03140 AhpF alkyl hydropero 95.5 0.056 1.2E-06 59.4 9.5 89 60-175 112-200 (515)
181 cd02983 P5_C P5 family, C-term 95.5 0.09 1.9E-06 46.8 8.8 109 47-178 3-119 (130)
182 KOG3171 Conserved phosducin-li 95.3 0.056 1.2E-06 51.3 7.0 110 47-173 139-250 (273)
183 TIGR02190 GlrX-dom Glutaredoxi 94.9 0.072 1.6E-06 42.9 6.0 54 68-134 9-63 (79)
184 PHA03005 sulfhydryl oxidase; P 94.9 0.11 2.4E-06 42.7 6.8 49 315-363 9-57 (96)
185 PHA03050 glutaredoxin; Provisi 94.9 0.061 1.3E-06 46.3 5.8 58 69-134 15-75 (108)
186 PRK10329 glutaredoxin-like pro 94.9 0.17 3.6E-06 41.2 8.0 74 69-174 3-77 (81)
187 PF11009 DUF2847: Protein of u 94.9 0.13 2.9E-06 43.9 7.6 83 52-141 6-91 (105)
188 PF05768 DUF836: Glutaredoxin- 94.4 0.14 3.1E-06 41.4 6.5 80 69-171 2-81 (81)
189 cd03073 PDI_b'_ERp72_ERp57 PDI 94.3 0.57 1.2E-05 40.5 10.5 100 49-173 2-110 (111)
190 TIGR02181 GRX_bact Glutaredoxi 94.1 0.06 1.3E-06 43.1 3.8 53 69-134 1-55 (79)
191 TIGR02189 GlrX-like_plant Glut 93.9 0.07 1.5E-06 45.1 4.0 53 69-134 10-67 (99)
192 TIGR02194 GlrX_NrdH Glutaredox 93.9 0.13 2.9E-06 40.4 5.3 52 70-134 2-54 (72)
193 PF07449 HyaE: Hydrogenase-1 e 93.8 0.19 4.2E-06 43.1 6.4 83 47-141 10-95 (107)
194 KOG2640 Thioredoxin [Function 93.8 0.039 8.4E-07 55.4 2.4 99 59-180 70-168 (319)
195 PF13848 Thioredoxin_6: Thiore 93.7 0.31 6.7E-06 45.2 8.3 71 83-178 8-79 (184)
196 cd03418 GRX_GRXb_1_3_like Glut 93.6 0.093 2E-06 41.3 3.9 53 69-134 2-57 (75)
197 cd03029 GRX_hybridPRX5 Glutare 93.5 0.23 5E-06 38.9 6.1 53 69-134 3-56 (72)
198 cd03069 PDI_b_ERp57 PDIb famil 93.0 1.1 2.3E-05 38.1 9.8 96 53-173 8-103 (104)
199 COG1225 Bcp Peroxiredoxin [Pos 92.7 0.71 1.5E-05 42.4 8.7 63 60-128 25-107 (157)
200 cd03027 GRX_DEP Glutaredoxin ( 92.6 0.16 3.6E-06 39.9 4.0 53 69-134 3-57 (73)
201 PF00837 T4_deiodinase: Iodoth 92.6 0.47 1E-05 46.3 7.8 54 43-96 79-133 (237)
202 PRK10638 glutaredoxin 3; Provi 91.8 0.46 1E-05 38.4 5.8 53 69-134 4-58 (83)
203 cd03013 PRX5_like Peroxiredoxi 91.5 0.36 7.9E-06 44.2 5.5 59 66-130 30-93 (155)
204 cd03066 PDI_b_Calsequestrin_mi 91.0 3.3 7.2E-05 34.8 10.6 95 49-173 3-100 (102)
205 cd03028 GRX_PICOT_like Glutare 90.4 0.49 1.1E-05 39.1 4.8 53 69-134 10-69 (90)
206 TIGR00365 monothiol glutaredox 90.2 0.52 1.1E-05 39.7 4.8 47 75-134 25-73 (97)
207 PRK10824 glutaredoxin-4; Provi 90.2 0.7 1.5E-05 40.3 5.6 69 56-143 8-83 (115)
208 KOG3170 Conserved phosducin-li 90.1 1.6 3.4E-05 41.5 8.1 107 46-172 91-199 (240)
209 COG0695 GrxC Glutaredoxin and 89.7 0.97 2.1E-05 36.6 5.9 53 69-134 3-59 (80)
210 cd03019 DsbA_DsbA DsbA family, 89.7 0.48 1E-05 43.7 4.7 31 65-95 15-45 (178)
211 TIGR03143 AhpF_homolog putativ 89.5 2 4.4E-05 47.7 10.2 97 56-174 357-454 (555)
212 KOG1752 Glutaredoxin and relat 89.3 1.2 2.7E-05 38.0 6.4 71 55-143 6-80 (104)
213 COG1651 DsbG Protein-disulfide 88.1 6.3 0.00014 38.5 11.6 46 48-93 67-112 (244)
214 PF13743 Thioredoxin_5: Thiore 87.7 1.8 3.9E-05 40.5 7.0 25 71-95 2-26 (176)
215 COG3019 Predicted metal-bindin 86.6 3.9 8.5E-05 36.6 7.9 74 68-174 27-104 (149)
216 PRK10954 periplasmic protein d 85.5 0.87 1.9E-05 43.7 3.8 30 66-95 38-70 (207)
217 PTZ00062 glutaredoxin; Provisi 84.0 3.9 8.5E-05 39.3 7.4 53 69-134 115-174 (204)
218 cd03068 PDI_b_ERp72 PDIb famil 83.7 9.4 0.0002 32.6 9.0 99 52-173 7-107 (107)
219 PRK12759 bifunctional gluaredo 83.0 2.1 4.6E-05 45.7 5.7 53 69-134 4-66 (410)
220 PF02630 SCO1-SenC: SCO1/SenC; 79.2 4.3 9.3E-05 37.9 5.7 71 48-124 37-109 (174)
221 KOG2792 Putative cytochrome C 77.6 33 0.00071 34.1 11.2 50 62-112 136-186 (280)
222 TIGR03147 cyt_nit_nrfF cytochr 74.9 5.8 0.00013 35.1 4.9 17 432-448 74-90 (126)
223 PRK10144 formate-dependent nit 72.4 8.3 0.00018 34.1 5.2 17 432-448 74-90 (126)
224 PF03918 CcmH: Cytochrome C bi 72.2 2.8 6.1E-05 38.2 2.4 17 432-448 74-90 (148)
225 COG1999 Uncharacterized protei 69.9 38 0.00083 32.6 9.8 65 64-133 66-135 (207)
226 COG0450 AhpC Peroxiredoxin [Po 67.2 23 0.00051 33.6 7.4 94 64-172 32-159 (194)
227 COG1331 Highly conserved prote 66.8 8.9 0.00019 43.0 5.2 79 50-139 30-120 (667)
228 PF08693 SKG6: Transmembrane a 66.7 2.2 4.8E-05 29.8 0.4 18 476-493 15-32 (40)
229 PF06305 DUF1049: Protein of u 65.3 9.6 0.00021 29.4 3.8 39 480-518 18-60 (68)
230 cd03040 GST_N_mPGES2 GST_N fam 60.8 61 0.0013 25.1 7.9 76 69-175 2-77 (77)
231 cd03060 GST_N_Omega_like GST_N 58.9 19 0.00041 27.7 4.5 53 70-134 2-54 (71)
232 PF12172 DUF35_N: Rubredoxin-l 54.5 2.3 4.9E-05 29.0 -1.3 16 404-419 19-34 (37)
233 PF06305 DUF1049: Protein of u 53.7 21 0.00046 27.4 4.0 11 499-509 45-55 (68)
234 PF15050 SCIMP: SCIMP protein 52.5 21 0.00044 31.1 3.9 21 481-501 9-29 (133)
235 cd03041 GST_N_2GST_N GST_N fam 51.6 41 0.00088 26.4 5.4 55 69-134 2-56 (77)
236 cd03031 GRX_GRX_like Glutaredo 51.4 38 0.00083 30.8 5.8 53 69-134 2-66 (147)
237 PF09673 TrbC_Ftype: Type-F co 50.6 59 0.0013 28.1 6.6 45 82-137 36-80 (113)
238 PF02439 Adeno_E3_CR2: Adenovi 50.4 15 0.00033 25.3 2.2 19 488-506 16-34 (38)
239 PF04805 Pox_E10: E10-like pro 49.5 23 0.00051 27.5 3.3 39 345-383 14-53 (70)
240 cd03051 GST_N_GTT2_like GST_N 46.2 37 0.0008 25.7 4.3 54 70-134 2-57 (74)
241 PF09049 SNN_transmemb: Stanni 46.1 22 0.00048 23.0 2.3 14 487-500 17-30 (33)
242 COG2761 FrnE Predicted dithiol 44.6 34 0.00074 33.4 4.5 42 118-176 174-215 (225)
243 cd00570 GST_N_family Glutathio 43.8 38 0.00081 24.7 3.9 53 71-134 3-55 (71)
244 PF14316 DUF4381: Domain of un 43.3 33 0.00071 31.0 4.1 30 483-513 23-52 (146)
245 PF08114 PMP1_2: ATPase proteo 42.2 34 0.00073 23.9 2.9 22 488-510 17-38 (43)
246 PF15099 PIRT: Phosphoinositid 41.5 21 0.00045 31.4 2.3 14 500-513 100-113 (129)
247 PF13417 GST_N_3: Glutathione 41.5 1.6E+02 0.0035 22.6 7.6 71 72-175 2-72 (75)
248 cd02978 KaiB_like KaiB-like fa 41.4 95 0.0021 24.7 5.8 59 68-134 3-61 (72)
249 PF00255 GSHPx: Glutathione pe 40.9 48 0.001 28.5 4.5 56 49-113 7-62 (108)
250 PF12768 Rax2: Cortical protei 40.3 22 0.00049 35.9 2.7 42 474-516 224-266 (281)
251 PF04592 SelP_N: Selenoprotein 39.6 54 0.0012 32.2 5.0 51 60-113 21-71 (238)
252 cd02977 ArsC_family Arsenate R 38.5 27 0.00059 29.3 2.6 20 70-89 2-21 (105)
253 TIGR02742 TrbC_Ftype type-F co 38.4 56 0.0012 29.1 4.6 55 117-173 60-114 (130)
254 PHA03075 glutaredoxin-like pro 37.0 49 0.0011 28.8 3.8 29 66-94 2-30 (123)
255 cd03035 ArsC_Yffb Arsenate Red 35.7 32 0.0007 29.2 2.6 20 70-89 2-21 (105)
256 cd02990 UAS_FAF1 UAS family, F 35.4 3.3E+02 0.0071 24.4 9.8 93 65-174 21-133 (136)
257 PRK09301 circadian clock prote 35.0 1.2E+02 0.0026 25.9 5.8 62 65-134 5-66 (103)
258 TIGR02654 circ_KaiB circadian 34.9 1.3E+02 0.0027 24.9 5.8 61 66-134 3-63 (87)
259 PF01323 DSBA: DSBA-like thior 34.4 55 0.0012 30.2 4.3 39 115-171 154-193 (193)
260 KOG2507 Ubiquitin regulatory p 34.1 2E+02 0.0043 30.8 8.4 98 55-172 7-109 (506)
261 cd03045 GST_N_Delta_Epsilon GS 33.6 59 0.0013 24.8 3.7 54 70-134 2-57 (74)
262 cd03024 DsbA_FrnE DsbA family, 33.5 41 0.00088 31.5 3.2 38 116-170 163-200 (201)
263 cd03059 GST_N_SspA GST_N famil 30.3 71 0.0015 24.2 3.6 52 70-133 2-53 (73)
264 PF03789 ELK: ELK domain ; In 30.0 28 0.00061 21.0 0.9 17 504-520 3-19 (22)
265 COG3634 AhpF Alkyl hydroperoxi 29.2 1.9E+02 0.0042 30.3 7.3 85 60-171 111-195 (520)
266 PF01216 Calsequestrin: Calseq 29.1 3.4E+02 0.0073 28.4 8.9 105 45-176 145-249 (383)
267 COG3531 Predicted protein-disu 28.9 68 0.0015 30.7 3.7 44 118-174 164-209 (212)
268 cd03037 GST_N_GRX2 GST_N famil 28.8 1.3E+02 0.0029 22.7 5.0 19 71-89 3-21 (71)
269 cd03036 ArsC_like Arsenate Red 27.5 54 0.0012 28.0 2.6 20 70-89 2-21 (111)
270 PF12301 CD99L2: CD99 antigen 27.0 70 0.0015 29.8 3.4 35 473-512 111-145 (169)
271 KOG1651 Glutathione peroxidase 26.9 1.5E+02 0.0033 27.5 5.5 58 48-113 19-76 (171)
272 PF11770 GAPT: GRB2-binding ad 26.6 27 0.00057 31.7 0.6 27 476-502 8-34 (158)
273 KOG4266 Subtilisin kexin isozy 26.6 50 0.0011 36.7 2.7 42 478-519 990-1031(1033)
274 PRK01655 spxA transcriptional 26.3 67 0.0015 28.4 3.1 21 69-89 2-22 (131)
275 PF15284 PAGK: Phage-encoded v 25.9 70 0.0015 24.5 2.6 29 482-511 7-35 (61)
276 TIGR00739 yajC preprotein tran 25.4 62 0.0013 26.4 2.5 16 501-516 20-35 (84)
277 PRK05886 yajC preprotein trans 25.1 84 0.0018 27.1 3.3 18 502-519 22-40 (109)
278 COG3088 CcmH Uncharacterized p 24.8 1.5E+02 0.0033 27.0 5.0 16 433-448 79-94 (153)
279 cd03022 DsbA_HCCA_Iso DsbA fam 24.4 87 0.0019 28.8 3.7 18 117-134 156-173 (192)
280 PHA02706 hypothetical protein; 24.2 24 0.00052 25.5 -0.1 30 488-517 17-46 (58)
281 PF06522 B12D: NADH-ubiquinone 24.0 66 0.0014 25.5 2.3 18 478-495 5-22 (73)
282 smart00575 ZnF_PMZ plant mutat 23.8 43 0.00092 21.2 1.0 15 306-325 7-21 (28)
283 cd03019 DsbA_DsbA DsbA family, 23.2 89 0.0019 28.3 3.5 18 117-134 132-149 (178)
284 PF15330 SIT: SHP2-interacting 22.7 1E+02 0.0022 26.5 3.3 28 485-513 6-34 (107)
285 PF04134 DUF393: Protein of un 22.6 86 0.0019 26.5 3.0 45 72-127 2-46 (114)
286 PF06053 DUF929: Domain of unk 22.6 94 0.002 30.9 3.6 31 64-94 57-87 (249)
287 PF15345 TMEM51: Transmembrane 22.6 1.2E+02 0.0027 29.6 4.3 25 469-493 52-76 (233)
288 PF14143 YrhC: YrhC-like prote 22.3 95 0.0021 24.7 2.9 24 491-516 46-69 (72)
289 TIGR01617 arsC_related transcr 22.1 76 0.0016 27.3 2.6 20 70-89 2-21 (117)
290 PF05214 Baculo_p33: Baculovir 22.1 70 0.0015 31.5 2.5 43 316-358 108-163 (250)
291 cd02974 AhpF_NTD_N Alkyl hydro 21.7 4.7E+02 0.01 21.7 9.2 82 56-171 10-91 (94)
292 PF11980 DUF3481: Domain of un 21.5 83 0.0018 25.7 2.4 24 483-506 22-45 (87)
293 KOG0852 Alkyl hydroperoxide re 21.3 1.4E+02 0.0031 28.0 4.3 48 50-98 18-67 (196)
294 PF07010 Endomucin: Endomucin; 20.8 1.2E+02 0.0026 29.6 3.7 37 469-506 180-216 (259)
295 PRK12559 transcriptional regul 20.5 1E+02 0.0022 27.3 3.1 21 69-89 2-22 (131)
296 COG0386 BtuE Glutathione perox 20.3 1.7E+02 0.0036 27.0 4.4 75 48-132 10-94 (162)
297 PRK14749 hypothetical protein; 20.2 1.6E+02 0.0035 19.2 3.0 19 485-504 7-25 (30)
298 PF02009 Rifin_STEVOR: Rifin/s 20.1 96 0.0021 31.7 3.2 37 482-519 259-295 (299)
No 1
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.8e-95 Score=752.77 Aligned_cols=446 Identities=38% Similarity=0.697 Sum_probs=338.6
Q ss_pred cccCcceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHH
Q 009987 43 VEVDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCD 122 (521)
Q Consensus 43 ~~~~~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~ 122 (521)
.+.|+|++|+.++|+.+|.+++ +..+|+||++|||||++|+|+|+++|+++.+|. +.+.+++|||++++|..+|+
T Consensus 36 ~~~D~ii~Ld~~tf~~~v~~~~-~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~----~vv~vaaVdCA~~~N~~lCR 110 (606)
T KOG1731|consen 36 SPDDPIIELDVDTFNAAVFGSR-KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWR----PVVRVAAVDCADEENVKLCR 110 (606)
T ss_pred CCCCCeEEeehhhhHHHhcccc-hhHHHHHHHhhhhhhhhcchHHHHHHHHHhccc----ceeEEEEeeccchhhhhhHh
Confidence 4668999999999999998876 456999999999999999999999999999876 78999999999999999999
Q ss_pred hCCCCcCceEEEecCCc-------ccCC-------------------------CCC---CCccchhhhhc-cccCCHH--
Q 009987 123 KFSVGHYPMLLWGSPSK-------FVAG-------------------------SWE---PNQEKKEIRAL-EDWQTAD-- 164 (521)
Q Consensus 123 ~f~I~~yPTl~~f~~g~-------~~~~-------------------------~~~---~~~~~~~v~~~-~G~~~~~-- 164 (521)
+|+|++|||++||+++. ...+ .|+ |..+...+..+ +|..+..
T Consensus 111 ef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~y 190 (606)
T KOG1731|consen 111 EFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANY 190 (606)
T ss_pred hcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccce
Confidence 99999999999997652 1111 122 11111111111 1111110
Q ss_pred ---------HHHHH---HHH----hcccCcCCCcccccc-----------------------------------------
Q 009987 165 ---------GLLTW---INK----QTSRSYGLDDEKFEN----------------------------------------- 187 (521)
Q Consensus 165 ---------~L~~~---i~~----~l~~~~~l~~~~~~~----------------------------------------- 187 (521)
..+.| |+- ..+..+.++++.+..
T Consensus 191 vAiv~e~~~s~lg~~~~l~~l~~~~v~vr~~~d~q~~~~~~l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg 270 (606)
T KOG1731|consen 191 VAIVFETEPSDLGWANLLNDLPSKQVGVRARLDTQNFPLFGLKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLG 270 (606)
T ss_pred eEEEEecCCcccHHHHHHhhccCCCcceEEEecchhccccccCCCCchhhhhhcCCcccccccccccHHHHHHHHHHHhc
Confidence 00111 111 111111111111100
Q ss_pred --------ccCCCC-------CCCccchh---HhH--hHhhhhhhhHHHHHH-hhcccchhhHHHHHHHHHHHHHhcCCc
Q 009987 188 --------EQLPSN-------ISDPGQIA---RAV--YDVEEATTTAFDIIL-DHKMIKSETRASLIRFLQVLVAHHPSR 246 (521)
Q Consensus 188 --------~~~~~~-------~~~~~~~~---~~~--~Dle~a~~~a~~~~l-~~~~l~ge~l~aL~~Fl~vl~~~~P~~ 246 (521)
...+.. +..+..+. -.| .|+|+|+.++++..+ ....|+|+++.||++|++++++++|+.
T Consensus 271 ~~~~a~~pt~~p~~~~~~~~~Id~~~~~l~~~~~V~~aDLeqAm~~~L~~Ev~R~~~i~g~~l~aLk~f~~ll~r~~P~~ 350 (606)
T KOG1731|consen 271 DKNEASGPTLHPITATTAAPTIDAPSEVLNNQYFVYEADLEQAMSYILHIEVPRTALIRGENLAALKEFMHLLRRYFPGT 350 (606)
T ss_pred CccccCCCCcCcccccccchhhhcchhhcCccceehHhhHHHHHHHHHHHhhcchhhccCchHHHHHHHHHHHHHhCCCC
Confidence 000000 00000000 012 389998888887544 557899999999999999999999996
Q ss_pred cccchhHHHHHhhhhcCCCCccchhhHHHhhccCCCCCCCcCccCCCCC-CCCcccccCCCCCcCcccccHHHHHHHHhh
Q 009987 247 RCRKGSAKVLVNFDDFSPSHMQSADKQEVVNNNGKGGLGNFPICGKEVP-RGYWIFCRGSKNDTRGFSCGLWVLLHSLSV 325 (521)
Q Consensus 247 ~~r~~~~~lL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p-~~~w~~C~gS~~~~Rgy~CglW~lfH~ltv 325 (521)
+ ....++..+++ |......... ..+.+.+...+.+|.++| +.+|+||+||+|++||||||||||||+|||
T Consensus 351 ~---~~~~l~~~Ld~-~~~~~~~it~-----~~f~d~~~~~~~~g~p~p~~~~w~gC~GS~P~~RGftCgLWTLFH~lTV 421 (606)
T KOG1731|consen 351 A---DGRRLVNSLDN-SLSARQVITG-----EWFRDVLDDLEACGSPFPKEGTWVGCAGSKPHLRGFTCGLWTLFHALTV 421 (606)
T ss_pred h---hHHHHHHHHhh-hhhhceeecH-----HHHHHHHHHHHHhCCCccccceeEeecCCCCccCCcchHHHHHHHHhhh
Confidence 4 23345555544 3322211111 123455667788999999 559999999999999999999999999999
Q ss_pred cCCCCCC----HHHHHHHHHHHHhccCChHHHHHHHHHHhcCC-CCCCChhHHHHHHHHhhhhhhhhccccccccCCCCC
Q 009987 326 RIDDGES----QFTFTAVCDFIHNFFVCEECRQHFYQMCSSVT-SPFNKTRDFALWLWSTHNQVNERLMKLEASLKTGDP 400 (521)
Q Consensus 326 ~~~~~~~----~~~~~~~~~~v~~Ff~C~~C~~hf~~~~~~~~-~~~~~~~~~~lWlw~~HN~VN~rl~~~~~~~~~~dp 400 (521)
++.+++. ..++..+.+||++||+|.+||+||++|+.+.. ..|.+++|++||||++||+||+||+|+ +||||
T Consensus 422 ~Aa~~~~~~~~~~~l~~l~~~vk~FFgC~dC~~HF~~Ma~~~~~~~V~~ped~vLWLW~aHN~VN~RLaGd----~TeDP 497 (606)
T KOG1731|consen 422 EAAKQEVHFAFTPILDVLHGFVKNFFGCTDCREHFQKMATRRKLHRVRRPEDVVLWLWSAHNEVNARLAGD----STEDP 497 (606)
T ss_pred hhcccccccchhccchhhHHHHHHccCchHHHHHHHHHHHhhcccccCChhhhhhHHHHHhhHHHHHhccC----CCCCC
Confidence 9987643 34678888899999999999999999999765 789999999999999999999999997 99999
Q ss_pred CCCCCCCCCCCCChhhhccCCCCCCcccCCCCChHHHHHHHHHHhCCCcccccccccccc-CCCccccccccccccccee
Q 009987 401 KFPKIIWPPKQLCSSCYRSHHHGDMKFRQIDWDQDEVFKFLTNYYGNTLVSLYKDREFLR-NDGIDGALEDLVVSTNAVV 479 (521)
Q Consensus 401 ~~pk~~~P~~~~Cp~C~~~~~~~~~~~~~~~w~e~~V~~fL~~~Y~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 479 (521)
+|||+|||++++||+||..+ ++||+|+||+|||+|||...+|.|++.+... +++.....++....+|..+
T Consensus 498 kFPK~QFP~kelCp~Cy~~~---------~ewd~d~vl~FLk~yY~ik~~S~~~l~~~~~~~~~~~k~~~~~k~~~n~~~ 568 (606)
T KOG1731|consen 498 KFPKVQFPPKELCPDCYSSS---------IEWDEDEVLKFLKKYYSIKPVSRYALPGESRSKEEEGKKLEAQKRPTNAFV 568 (606)
T ss_pred CCCcccCCChhhChhhhcCC---------CCcCHHHHHHHHHHHcCCCcccccccccccccccccccchhhhccCccccc
Confidence 99999999999999999874 4799999999999999999999999999874 4444445777788899999
Q ss_pred ecHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhh
Q 009987 480 VPVGAALAIALASCAFGALACYWRSQQKNRKYKYQL 515 (521)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (521)
||.|++.+|+.|+|+||+|||+||.|++.|||.+..
T Consensus 569 v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 604 (606)
T KOG1731|consen 569 VPAGAALALAAASCAFGALACYQRTQKKNRKYQYNP 604 (606)
T ss_pred ccccchhhhhhhhhhhhhccccccChhhhhcccCCC
Confidence 999999999999999999999999999999998764
No 2
>PF04777 Evr1_Alr: Erv1 / Alr family; InterPro: IPR006863 Biogenesis of Fe/S clusters involves a number of essential mitochondrial proteins. Erv1p of Saccharomyces cerevisiae (Baker's yeast) mitochondria is required for the maturation of Fe/S proteins in the cytosol. The ALR (augmenter of liver regeneration) represents a mammalian ortholog of yeast Erv1p. Both Erv1p and full-length ALR are located in the mitochondrial intermembrane and it is thought to operate downstream of the mitochondrial ABC transporter [].; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process; PDB: 3MBG_C 3U2L_A 3U2M_A 3QD9_D 3QCP_A 3O55_A 2HJ3_B 3GWN_A 3T58_D 3T59_B ....
Probab=99.95 E-value=3e-29 Score=211.76 Aligned_cols=92 Identities=41% Similarity=0.819 Sum_probs=84.9
Q ss_pred ccHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCCChhHHHHHHHHhhhhhhhhccc
Q 009987 314 CGLWVLLHSLSVRIDDGES---QFTFTAVCDFIHNFFVCEECRQHFYQMCSSVTSPFNKTRDFALWLWSTHNQVNERLMK 390 (521)
Q Consensus 314 CglW~lfH~ltv~~~~~~~---~~~~~~~~~~v~~Ff~C~~C~~hf~~~~~~~~~~~~~~~~~~lWlw~~HN~VN~rl~~ 390 (521)
||+|+|||+||+++|+.|+ ..++.+|.+++.+||||++||+||.+++.+.++.++|++++++|||++||.||+||+|
T Consensus 1 c~~W~llH~~a~~~p~~p~~~~~~~~~~~~~~~~~~~pC~~C~~hf~~~~~~~~~~v~sr~~l~~Wl~~~HN~VN~rL~k 80 (95)
T PF04777_consen 1 CGLWTLLHTLAAYYPENPTEEEKQVMEAFFRSFPHFFPCEECRNHFSKYIKKNPPQVSSREDLVLWLWRAHNKVNERLGK 80 (95)
T ss_dssp HHHHHHHHHHHHTSHSSHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHSGGGGSSHHHHHHHHHHHHHHHHHHTTT
T ss_pred CchHHHHHHHHhcCccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999877 4578888899999999999999999999998889999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCC
Q 009987 391 LEASLKTGDPKFPKIIWPP 409 (521)
Q Consensus 391 ~~~~~~~~dp~~pk~~~P~ 409 (521)
+.+ ++||+| |.|||+
T Consensus 81 ~~~---~~~~~~-~~~~~~ 95 (95)
T PF04777_consen 81 PIF---CDDPKF-KEQWPT 95 (95)
T ss_dssp STT---TSGTTH-HHHHT-
T ss_pred CCC---CCcHHH-HhHcCC
Confidence 843 789999 999996
No 3
>KOG3355 consensus Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=9.9e-22 Score=175.56 Aligned_cols=88 Identities=28% Similarity=0.546 Sum_probs=81.6
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHHHHHH---hccCChHHHHHHHHHHhcCCCCCCChhHHHHHHHHhhhhhhhhcccc
Q 009987 315 GLWVLLHSLSVRIDDGESQFTFTAVCDFIH---NFFVCEECRQHFYQMCSSVTSPFNKTRDFALWLWSTHNQVNERLMKL 391 (521)
Q Consensus 315 glW~lfH~ltv~~~~~~~~~~~~~~~~~v~---~Ff~C~~C~~hf~~~~~~~~~~~~~~~~~~lWlw~~HN~VN~rl~~~ 391 (521)
+.|+|||+|+++||+.|+.+....|+.|+. .||||.+|++||++.+.++++++.||+++..|||.+||.||++|+|.
T Consensus 76 stWtllHT~aA~yP~~PT~eqk~~~~sFi~~~s~~yPC~eCa~dl~K~l~~nppq~~SRe~~~~W~C~vHN~VNekLgKp 155 (177)
T KOG3355|consen 76 STWTLLHTLAANYPDRPTPEQKDDMRSFIHLFSKFYPCGECAKDLRKILRKNPPQTSSREAFTQWLCHVHNKVNEKLGKP 155 (177)
T ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHcCCC
Confidence 459999999999999999999999999998 46999999999999999999999999999999999999999999998
Q ss_pred ccccCCCCCCC
Q 009987 392 EASLKTGDPKF 402 (521)
Q Consensus 392 ~~~~~~~dp~~ 402 (521)
.|+|.+.|.++
T Consensus 156 ~fdC~~v~erw 166 (177)
T KOG3355|consen 156 KFDCRTVDERW 166 (177)
T ss_pred CCchhHHHHHH
Confidence 88877766554
No 4
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.83 E-value=2.7e-20 Score=161.81 Aligned_cols=106 Identities=14% Similarity=0.254 Sum_probs=89.2
Q ss_pred cccCcceecCcccHHHHHh-cCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHH
Q 009987 43 VEVDHAVELNATNFDAVLR-DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLC 121 (521)
Q Consensus 43 ~~~~~v~~L~~~~f~~~l~-~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~ 121 (521)
...+.|++|++++|++.+. ...++++||+||||||+||+.++|.|+++|+.++ +.+.|++|||+ ++.++|
T Consensus 6 ~~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~-------~~v~~~~Vd~d--~~~~l~ 76 (113)
T cd03006 6 SQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLS-------DQVLFVAINCW--WPQGKC 76 (113)
T ss_pred CCCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc-------CCeEEEEEECC--CChHHH
Confidence 3456799999999998732 2235889999999999999999999999999986 45899999994 678899
Q ss_pred -HhCCCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHH
Q 009987 122 -DKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (521)
Q Consensus 122 -~~f~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i 170 (521)
++|+|++|||+++|++|+ ....|.|.++.+.|+.|+
T Consensus 77 ~~~~~I~~~PTl~lf~~g~-------------~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 77 RKQKHFFYFPVIHLYYRSR-------------GPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred HHhcCCcccCEEEEEECCc-------------cceEEeCCCCHHHHHhhC
Confidence 589999999999998773 235689999999998873
No 5
>COG5054 ERV1 Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.8e-20 Score=165.36 Aligned_cols=87 Identities=22% Similarity=0.418 Sum_probs=79.9
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh---ccCChHHHHHHHHHHhcCCCCCCChhHHHHHHHHhhhhhhhhcccc
Q 009987 315 GLWVLLHSLSVRIDDGESQFTFTAVCDFIHN---FFVCEECRQHFYQMCSSVTSPFNKTRDFALWLWSTHNQVNERLMKL 391 (521)
Q Consensus 315 glW~lfH~ltv~~~~~~~~~~~~~~~~~v~~---Ff~C~~C~~hf~~~~~~~~~~~~~~~~~~lWlw~~HN~VN~rl~~~ 391 (521)
+.|||||+|+++||+.|+......|+.|+.. +|||.||+.||++.+...+++|+||+++..|+|++||.||+||+++
T Consensus 85 ssWtllHtv~A~yP~~PT~~qr~~l~sFl~~~s~~yPCgeCs~~f~K~l~~~ppqv~SRea~~~W~CevHN~VNekL~Kp 164 (181)
T COG5054 85 SSWTLLHTVAANYPARPTPQQRDDLRSFLFLFSITYPCGECSKHFQKLLDVYPPQVSSREAATTWACEVHNKVNEKLGKP 164 (181)
T ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhheeecHHHHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHHHHHhCCC
Confidence 3699999999999999999999999999985 5999999999999999999999999999999999999999999998
Q ss_pred ccccCCCCCC
Q 009987 392 EASLKTGDPK 401 (521)
Q Consensus 392 ~~~~~~~dp~ 401 (521)
.++|.+-+.+
T Consensus 165 ~~dC~~~~e~ 174 (181)
T COG5054 165 KFDCDTWNER 174 (181)
T ss_pred CcccchhHHH
Confidence 8877765443
No 6
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.81 E-value=1.6e-19 Score=153.79 Aligned_cols=99 Identities=22% Similarity=0.455 Sum_probs=87.4
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCC
Q 009987 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (521)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I 126 (521)
.+++|+.++|+..+.+. ++++|.|||+||++|+++.|.|+++|+.++ +.+.|++|||+ +++.+|++|+|
T Consensus 2 ~~~~l~~~~f~~~v~~~--~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~-------~~~~~~~vd~~--~~~~~~~~~~v 70 (101)
T cd03003 2 EIVTLDRGDFDAAVNSG--EIWFVNFYSPRCSHCHDLAPTWREFAKEMD-------GVIRIGAVNCG--DDRMLCRSQGV 70 (101)
T ss_pred CeEEcCHhhHHHHhcCC--CeEEEEEECCCChHHHHhHHHHHHHHHHhc-------CceEEEEEeCC--ccHHHHHHcCC
Confidence 57899999999998654 789999999999999999999999999986 45899999994 67899999999
Q ss_pred CcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHH
Q 009987 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTW 169 (521)
Q Consensus 127 ~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~ 169 (521)
++|||+++|++|+. +..|.|.++.+.|.+|
T Consensus 71 ~~~Pt~~~~~~g~~-------------~~~~~G~~~~~~l~~f 100 (101)
T cd03003 71 NSYPSLYVFPSGMN-------------PEKYYGDRSKESLVKF 100 (101)
T ss_pred CccCEEEEEcCCCC-------------cccCCCCCCHHHHHhh
Confidence 99999999988742 3568899999998876
No 7
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.2e-19 Score=188.89 Aligned_cols=114 Identities=25% Similarity=0.552 Sum_probs=101.7
Q ss_pred ccCcceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHh
Q 009987 44 EVDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDK 123 (521)
Q Consensus 44 ~~~~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~ 123 (521)
....|..|+.+||+..|..+ ..+||+|||||||||++++|+|+++|..+++.+ ..|.+++|||+ ++.++|.+
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~~~--~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~----s~i~LakVDat--~~~~~~~~ 94 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETINGH--EFVLVEFYAPWCGHCKALAPEYEKAATELKEEG----SPVKLAKVDAT--EESDLASK 94 (493)
T ss_pred cccceEEEecccHHHHhccC--ceEEEEEEchhhhhhhhhCcHHHHHHHHhhccC----CCceeEEeecc--hhhhhHhh
Confidence 45679999999999999886 778999999999999999999999999998754 46999999996 45999999
Q ss_pred CCCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcccCc
Q 009987 124 FSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSY 178 (521)
Q Consensus 124 f~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~~~~ 178 (521)
|+|+||||+++|++|.. ...|.|+|+++.|+.|+.++.++..
T Consensus 95 y~v~gyPTlkiFrnG~~-------------~~~Y~G~r~adgIv~wl~kq~gPa~ 136 (493)
T KOG0190|consen 95 YEVRGYPTLKIFRNGRS-------------AQDYNGPREADGIVKWLKKQSGPAS 136 (493)
T ss_pred hcCCCCCeEEEEecCCc-------------ceeccCcccHHHHHHHHHhccCCCc
Confidence 99999999999999853 2569999999999999999988654
No 8
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.79 E-value=7.4e-19 Score=150.31 Aligned_cols=102 Identities=25% Similarity=0.592 Sum_probs=87.8
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCC
Q 009987 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (521)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I 126 (521)
.+++++.++|++.+.+. +++++|.|||+||++|+++.|.|+++++++. +.+.++.|||+ ++.++|++|+|
T Consensus 2 ~v~~l~~~~f~~~i~~~-~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~-------~~~~~~~vd~~--~~~~~~~~~~i 71 (104)
T cd03004 2 SVITLTPEDFPELVLNR-KEPWLVDFYAPWCGPCQALLPELRKAARALK-------GKVKVGSVDCQ--KYESLCQQANI 71 (104)
T ss_pred cceEcCHHHHHHHHhcC-CCeEEEEEECCCCHHHHHHHHHHHHHHHHhc-------CCcEEEEEECC--chHHHHHHcCC
Confidence 47889999999998775 4689999999999999999999999999985 45899999994 67899999999
Q ss_pred CcCceEEEecCCcccCCCCCCCccchhhhhccccCC-HHHHHHHH
Q 009987 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQT-ADGLLTWI 170 (521)
Q Consensus 127 ~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~-~~~L~~~i 170 (521)
+++||+++|++|. ..+..|.|..+ .++|.+||
T Consensus 72 ~~~Pt~~~~~~g~------------~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 72 RAYPTIRLYPGNA------------SKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CcccEEEEEcCCC------------CCceEccCCCCCHHHHHhhC
Confidence 9999999998761 22356888886 99998875
No 9
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.78 E-value=1.3e-18 Score=147.46 Aligned_cols=103 Identities=29% Similarity=0.670 Sum_probs=92.3
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCC
Q 009987 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG 127 (521)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~ 127 (521)
|..+|+++|++.+.+ .+++++|.||++||++|+.+.|.|+++++.+.+ .+.++.||| +++..+|++|+|+
T Consensus 1 v~~lt~~~f~~~i~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-------~v~~~~vd~--~~~~~l~~~~~v~ 70 (103)
T PF00085_consen 1 VIVLTDENFEKFINE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-------NVKFAKVDC--DENKELCKKYGVK 70 (103)
T ss_dssp SEEESTTTHHHHHTT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-------TSEEEEEET--TTSHHHHHHTTCS
T ss_pred CEECCHHHHHHHHHc-cCCCEEEEEeCCCCCccccccceeccccccccc-------ccccchhhh--hccchhhhccCCC
Confidence 568999999999988 348899999999999999999999999999863 589999999 4689999999999
Q ss_pred cCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHh
Q 009987 128 HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (521)
Q Consensus 128 ~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~ 173 (521)
++||+++|.+|+. ..++.|.++.+.|.+||++|
T Consensus 71 ~~Pt~~~~~~g~~-------------~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 71 SVPTIIFFKNGKE-------------VKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp SSSEEEEEETTEE-------------EEEEESSSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCcE-------------EEEEECCCCHHHHHHHHHcC
Confidence 9999999998743 34789999999999999885
No 10
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.78 E-value=1.1e-18 Score=150.40 Aligned_cols=107 Identities=22% Similarity=0.521 Sum_probs=89.0
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCC
Q 009987 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (521)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I 126 (521)
+++++++++|++.+.. +++++|.||||||++|+++.|.|+++++.+++... ..+.+.++.|||+ ++.++|++|+|
T Consensus 2 ~v~~l~~~~f~~~i~~--~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~-~~~~~~~~~vd~d--~~~~l~~~~~v 76 (108)
T cd02996 2 EIVSLTSGNIDDILQS--AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFP-DAGKVVWGKVDCD--KESDIADRYRI 76 (108)
T ss_pred ceEEcCHhhHHHHHhc--CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccC-CCCcEEEEEEECC--CCHHHHHhCCC
Confidence 5789999999998855 37899999999999999999999999998753210 0135999999994 57899999999
Q ss_pred CcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHH
Q 009987 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (521)
Q Consensus 127 ~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i 170 (521)
++|||+++|++|+.. ...|.|.++.++|.+||
T Consensus 77 ~~~Ptl~~~~~g~~~------------~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 77 NKYPTLKLFRNGMMM------------KREYRGQRSVEALAEFV 108 (108)
T ss_pred CcCCEEEEEeCCcCc------------ceecCCCCCHHHHHhhC
Confidence 999999999987521 24588999999999885
No 11
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.78 E-value=1.6e-18 Score=149.18 Aligned_cols=107 Identities=32% Similarity=0.659 Sum_probs=91.5
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCC
Q 009987 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG 127 (521)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~ 127 (521)
|++|++++|++.+.+. +++++|.|||+||++|+++.|.|+++++.+. +.+.++.|||+.+.+.++|++|+|+
T Consensus 2 v~~l~~~~~~~~i~~~-~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~-------~~~~~~~v~~~~~~~~~~~~~~~i~ 73 (109)
T cd03002 2 VYELTPKNFDKVVHNT-NYTTLVEFYAPWCGHCKNLKPEYAKAAKELD-------GLVQVAAVDCDEDKNKPLCGKYGVQ 73 (109)
T ss_pred eEEcchhhHHHHHhcC-CCeEEEEEECCCCHHHHhhChHHHHHHHHhc-------CCceEEEEecCccccHHHHHHcCCC
Confidence 6789999999999875 5779999999999999999999999999986 3588999999765689999999999
Q ss_pred cCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHH
Q 009987 128 HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (521)
Q Consensus 128 ~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i 170 (521)
++||+++|++|..... .....|.|.++.++|.+||
T Consensus 74 ~~Pt~~~~~~~~~~~~--------~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 74 GFPTLKVFRPPKKASK--------HAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred cCCEEEEEeCCCcccc--------cccccccCccCHHHHHHHh
Confidence 9999999988742110 2235689999999999997
No 12
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.76 E-value=6.7e-18 Score=163.58 Aligned_cols=110 Identities=24% Similarity=0.471 Sum_probs=94.0
Q ss_pred cCcceecCcccHHHHHhcC---CCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHH
Q 009987 45 VDHAVELNATNFDAVLRDT---PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLC 121 (521)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~---~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~ 121 (521)
.+.+++||+++|++.+... .+++++|+||||||++|++++|.|++++++++ +.+.++.|||+ ++.+++
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~-------~~v~~~~VD~~--~~~~l~ 99 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALK-------GQVNVADLDAT--RALNLA 99 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcC-------CCeEEEEecCc--ccHHHH
Confidence 4569999999999988653 24789999999999999999999999999986 45899999994 678999
Q ss_pred HhCCCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhccc
Q 009987 122 DKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (521)
Q Consensus 122 ~~f~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~~ 176 (521)
++|+|++|||+++|++|+. +..+.|.++.++|.+|+.+....
T Consensus 100 ~~~~I~~~PTl~~f~~G~~-------------v~~~~G~~s~e~L~~fi~~~~~~ 141 (224)
T PTZ00443 100 KRFAIKGYPTLLLFDKGKM-------------YQYEGGDRSTEKLAAFALGDFKK 141 (224)
T ss_pred HHcCCCcCCEEEEEECCEE-------------EEeeCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998743 23456789999999999988753
No 13
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.9e-18 Score=153.90 Aligned_cols=106 Identities=18% Similarity=0.339 Sum_probs=94.7
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCC
Q 009987 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (521)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I 126 (521)
.+..++..+|++.+.++ +.||+|+|||+|||||+.+.|.+++++.++. +.+.+++||. |++.+++.+|+|
T Consensus 44 ~~~~~s~~~~~~~Vi~S-~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~-------g~~k~~kvdt--D~~~ela~~Y~I 113 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINS-DVPVLVDFHAEWCGPCKMLGPILEELVSEYA-------GKFKLYKVDT--DEHPELAEDYEI 113 (150)
T ss_pred cccccCHHHHHHHHHcc-CCCEEEEEecCcCccHhHhhHHHHHHHHhhc-------CeEEEEEEcc--ccccchHhhcce
Confidence 46678889999998886 4889999999999999999999999999996 6799999997 678999999999
Q ss_pred CcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcc
Q 009987 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (521)
Q Consensus 127 ~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~ 175 (521)
.++||+++|++|+. ...+.|..+.+.|.++|++.++
T Consensus 114 ~avPtvlvfknGe~-------------~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 114 SAVPTVLVFKNGEK-------------VDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred eeeeEEEEEECCEE-------------eeeecccCCHHHHHHHHHHHhc
Confidence 99999999999843 3567899999999999998764
No 14
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.76 E-value=4.8e-18 Score=144.47 Aligned_cols=100 Identities=28% Similarity=0.573 Sum_probs=85.7
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCC
Q 009987 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (521)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I 126 (521)
.|++|+.++|++.+.+ . ++|+|||+||++|+++.|.|+++++.+.. ..+.++.|||+ ++..++++|+|
T Consensus 2 ~v~~l~~~~f~~~~~~---~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~------~~v~~~~vd~~--~~~~~~~~~~i 69 (101)
T cd02994 2 NVVELTDSNWTLVLEG---E-WMIEFYAPWCPACQQLQPEWEEFADWSDD------LGINVAKVDVT--QEPGLSGRFFV 69 (101)
T ss_pred ceEEcChhhHHHHhCC---C-EEEEEECCCCHHHHHHhHHHHHHHHhhcc------CCeEEEEEEcc--CCHhHHHHcCC
Confidence 4789999999988743 3 68999999999999999999999998652 34899999994 57899999999
Q ss_pred CcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHH
Q 009987 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (521)
Q Consensus 127 ~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~ 172 (521)
+++||+++|++|+. ..+.|.++.++|.+||++
T Consensus 70 ~~~Pt~~~~~~g~~--------------~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 70 TALPTIYHAKDGVF--------------RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred cccCEEEEeCCCCE--------------EEecCCCCHHHHHHHHhC
Confidence 99999999987732 357899999999999864
No 15
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.75 E-value=5.1e-18 Score=147.16 Aligned_cols=103 Identities=18% Similarity=0.304 Sum_probs=83.9
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEec--CCCh---hHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc---cccH
Q 009987 47 HAVELNATNFDAVLRDTPATYAVVEFFA--NWCP---ACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL---KINT 118 (521)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vlV~FyA--~WCg---~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~---d~~~ 118 (521)
.++.||.+||++.|.+. +.+||+||| |||+ ||++++|+|.+.+. .|.++.|||++ .++.
T Consensus 2 g~v~L~~~nF~~~v~~~--~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-----------~v~lakVd~~d~~~~~~~ 68 (116)
T cd03007 2 GCVDLDTVTFYKVIPKF--KYSLVKFDTAYPYGEKHEAFTRLAESSASATD-----------DLLVAEVGIKDYGEKLNM 68 (116)
T ss_pred CeeECChhhHHHHHhcC--CcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-----------ceEEEEEecccccchhhH
Confidence 37899999999999776 669999999 9998 77777777665443 37899999953 3568
Q ss_pred HHHHhCCCC--cCceEEEecCCcccCCCCCCCccchhhhhcccc-CCHHHHHHHHHHh
Q 009987 119 NLCDKFSVG--HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW-QTADGLLTWINKQ 173 (521)
Q Consensus 119 ~l~~~f~I~--~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~-~~~~~L~~~i~~~ 173 (521)
+||++|+|+ +||||++|++|... ....|.|. |++++|++||+++
T Consensus 69 ~L~~~y~I~~~gyPTl~lF~~g~~~-----------~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 69 ELGERYKLDKESYPVIYLFHGGDFE-----------NPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred HHHHHhCCCcCCCCEEEEEeCCCcC-----------CCccCCCCcccHHHHHHHHHhc
Confidence 999999999 99999999987321 22468997 9999999999875
No 16
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.74 E-value=7.5e-18 Score=147.67 Aligned_cols=108 Identities=15% Similarity=0.129 Sum_probs=91.4
Q ss_pred cCcceecCcccHHHHHhcCCCCeEEEEEecCCChh--Hh--hhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHH
Q 009987 45 VDHAVELNATNFDAVLRDTPATYAVVEFFANWCPA--CR--NYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNL 120 (521)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~--C~--~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l 120 (521)
.+.|..||++||++.+.+++ .++||.|||+|||+ |+ .+.|.+.++|.++-.. +.+.|++||+ ++++++
T Consensus 8 ~~~v~~lt~~nF~~~v~~~~-~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~-----~~v~~~kVD~--d~~~~L 79 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKYD-VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED-----KGIGFGLVDS--KKDAKV 79 (120)
T ss_pred CcceeeCChhhHHHHHHhCC-ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc-----CCCEEEEEeC--CCCHHH
Confidence 45689999999999998874 68899999999976 99 8889999998887211 4599999999 468999
Q ss_pred HHhCCCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhc
Q 009987 121 CDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (521)
Q Consensus 121 ~~~f~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l 174 (521)
+++|+|+++||+++|++|+. +. |.|.++.+.|.+||.+.+
T Consensus 80 a~~~~I~~iPTl~lfk~G~~-------------v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 80 AKKLGLDEEDSIYVFKDDEV-------------IE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred HHHcCCccccEEEEEECCEE-------------EE-eeCCCCHHHHHHHHHHHh
Confidence 99999999999999998842 34 889999999999998653
No 17
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.73 E-value=1.2e-17 Score=142.31 Aligned_cols=94 Identities=19% Similarity=0.409 Sum_probs=80.2
Q ss_pred ccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEE
Q 009987 54 TNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLL 133 (521)
Q Consensus 54 ~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~ 133 (521)
+++.+.+.+.++++++|+|||+||++|+.++|.|+++++.+. .+.+++||++ +++++++++|+|+++||++
T Consensus 7 ~~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--------~~~~~~vd~~-~~~~~l~~~~~V~~~PT~~ 77 (100)
T cd02999 7 NIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP--------QIRHLAIEES-SIKPSLLSRYGVVGFPTIL 77 (100)
T ss_pred hHHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--------cCceEEEECC-CCCHHHHHhcCCeecCEEE
Confidence 456667777788999999999999999999999999999985 2678889974 2578999999999999999
Q ss_pred EecCCcccCCCCCCCccchhhhhccccCCHHHHHHHH
Q 009987 134 WGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (521)
Q Consensus 134 ~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i 170 (521)
+|++| . +.++.|.++.++|.+||
T Consensus 78 lf~~g-~-------------~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 78 LFNST-P-------------RVRYNGTRTLDSLAAFY 100 (100)
T ss_pred EEcCC-c-------------eeEecCCCCHHHHHhhC
Confidence 99876 2 24588999999999885
No 18
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.73 E-value=1.5e-17 Score=141.21 Aligned_cols=101 Identities=31% Similarity=0.661 Sum_probs=86.4
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCC
Q 009987 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG 127 (521)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~ 127 (521)
++++++++|++.+.+. +++|.|||+||++|+.++|.++++++++.+.. ..+.++.|||+ ++..+|++|+|+
T Consensus 2 ~~~l~~~~f~~~~~~~---~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~----~~~~~~~vd~~--~~~~~~~~~~v~ 72 (102)
T cd03005 2 VLELTEDNFDHHIAEG---NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNEN----PSVKIAKVDCT--QHRELCSEFQVR 72 (102)
T ss_pred eeECCHHHHHHHhhcC---CEEEEEECCCCHHHHHhCHHHHHHHHHHhccC----CcEEEEEEECC--CChhhHhhcCCC
Confidence 6789999999999753 48999999999999999999999999997422 35899999994 578999999999
Q ss_pred cCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHH
Q 009987 128 HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (521)
Q Consensus 128 ~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i 170 (521)
++||+++|++|+ .+..+.|.++.++|.+||
T Consensus 73 ~~Pt~~~~~~g~-------------~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 73 GYPTLLLFKDGE-------------KVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred cCCEEEEEeCCC-------------eeeEeeCCCCHHHHHhhC
Confidence 999999998774 235688999999998875
No 19
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.73 E-value=3.6e-17 Score=142.77 Aligned_cols=88 Identities=34% Similarity=0.689 Sum_probs=79.1
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCC
Q 009987 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (521)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I 126 (521)
++++++.++|++.+.+.+ ++++|+|||+||++|+.+.|.|+++++.++++. +.+.++.+||+.+.+.++|++|+|
T Consensus 2 ~v~~l~~~~f~~~i~~~~-~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~----~~v~~~~vd~~~~~~~~~~~~~~i 76 (114)
T cd02992 2 PVIVLDAASFNSALLGSP-SAWLVEFYASWCGHCRAFAPTWKKLARDLRKWR----PVVRVAAVDCADEENVALCRDFGV 76 (114)
T ss_pred CeEECCHHhHHHHHhcCC-CeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcC----CceEEEEEeccchhhHHHHHhCCC
Confidence 588999999999998765 789999999999999999999999999986432 569999999976678899999999
Q ss_pred CcCceEEEecCCc
Q 009987 127 GHYPMLLWGSPSK 139 (521)
Q Consensus 127 ~~yPTl~~f~~g~ 139 (521)
+++||+++|++|.
T Consensus 77 ~~~Pt~~lf~~~~ 89 (114)
T cd02992 77 TGYPTLRYFPPFS 89 (114)
T ss_pred CCCCEEEEECCCC
Confidence 9999999998875
No 20
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.73 E-value=2.5e-17 Score=138.63 Aligned_cols=96 Identities=21% Similarity=0.466 Sum_probs=82.9
Q ss_pred ccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEE
Q 009987 54 TNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLL 133 (521)
Q Consensus 54 ~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~ 133 (521)
++|++.+.+..+++++|+|||+||++|+.+.|.++++++.+. +.+.++.||| +++..++++|+|+++||++
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~-------~~~~~~~vd~--~~~~~l~~~~~i~~~Pt~~ 71 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ-------GQFVLAKVNC--DAQPQIAQQFGVQALPTVY 71 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhC-------CcEEEEEEec--cCCHHHHHHcCCCCCCEEE
Confidence 468888877667899999999999999999999999999986 3588999999 4689999999999999999
Q ss_pred EecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHH
Q 009987 134 WGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWIN 171 (521)
Q Consensus 134 ~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~ 171 (521)
+|.+|+. +..+.|..+.+.|.+||+
T Consensus 72 ~~~~g~~-------------~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 72 LFAAGQP-------------VDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred EEeCCEE-------------eeeecCCCCHHHHHHHhC
Confidence 9987743 345788899999998873
No 21
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.1e-17 Score=160.80 Aligned_cols=111 Identities=20% Similarity=0.440 Sum_probs=98.2
Q ss_pred ccCcceecCcccHHHHH-hcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHH
Q 009987 44 EVDHAVELNATNFDAVL-RDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCD 122 (521)
Q Consensus 44 ~~~~v~~L~~~~f~~~l-~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~ 122 (521)
....|+++|..||+..| ..+..+||||+||||||++|+.+.|.+++++..++ |.+.+++||| |+++.++.
T Consensus 21 ~a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~-------G~f~LakvN~--D~~p~vAa 91 (304)
T COG3118 21 AAPGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK-------GKFKLAKVNC--DAEPMVAA 91 (304)
T ss_pred ccccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhC-------CceEEEEecC--CcchhHHH
Confidence 34459999999999866 44455699999999999999999999999999997 6799999999 57899999
Q ss_pred hCCCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhccc
Q 009987 123 KFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (521)
Q Consensus 123 ~f~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~~ 176 (521)
.|||+++||++.|.+|+.. ..+.|....+.|.+|+.++++.
T Consensus 92 qfgiqsIPtV~af~dGqpV-------------dgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 92 QFGVQSIPTVYAFKDGQPV-------------DGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred HhCcCcCCeEEEeeCCcCc-------------cccCCCCcHHHHHHHHHHhcCh
Confidence 9999999999999998544 4488999999999999999886
No 22
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.72 E-value=5e-17 Score=138.23 Aligned_cols=101 Identities=27% Similarity=0.540 Sum_probs=88.0
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCC
Q 009987 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG 127 (521)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~ 127 (521)
|.++++.+|++.+.+. +++++|.|||+||++|+++.|.|.++++.+. +.+.++.+|| +++.+++++|+|+
T Consensus 2 v~~l~~~~~~~~i~~~-~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~-------~~~~~~~id~--~~~~~~~~~~~i~ 71 (103)
T cd03001 2 VVELTDSNFDKKVLNS-DDVWLVEFYAPWCGHCKNLAPEWKKAAKALK-------GIVKVGAVDA--DVHQSLAQQYGVR 71 (103)
T ss_pred eEEcCHHhHHHHHhcC-CCcEEEEEECCCCHHHHHHhHHHHHHHHHhc-------CCceEEEEEC--cchHHHHHHCCCC
Confidence 6789999999998775 3678999999999999999999999999986 4589999999 4688999999999
Q ss_pred cCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHH
Q 009987 128 HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (521)
Q Consensus 128 ~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i 170 (521)
++||+++|++|+. ....|.|+++.++|.+|+
T Consensus 72 ~~P~~~~~~~~~~------------~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 72 GFPTIKVFGAGKN------------SPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred ccCEEEEECCCCc------------ceeecCCCCCHHHHHHHh
Confidence 9999999987721 235688999999999987
No 23
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.71 E-value=5e-17 Score=140.59 Aligned_cols=105 Identities=17% Similarity=0.434 Sum_probs=86.2
Q ss_pred cceecCcccHHHHHhc-CCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHh-C
Q 009987 47 HAVELNATNFDAVLRD-TPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDK-F 124 (521)
Q Consensus 47 ~v~~L~~~~f~~~l~~-~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~-f 124 (521)
.|++++.++|+..+.. ..++++||.|||+||++|+++.|.|+++++.+++ ..+.++.|||+. .+..+|++ |
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~------~~~~~~~vd~d~-~~~~~~~~~~ 74 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG------SNVKVAKFNADG-EQREFAKEEL 74 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc------CCeEEEEEECCc-cchhhHHhhc
Confidence 4789999999998853 3457899999999999999999999999999873 248999999953 25678874 9
Q ss_pred CCCcCceEEEecCCcccCCCCCCCccchhhhhcccc-CCHHHHHHHH
Q 009987 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW-QTADGLLTWI 170 (521)
Q Consensus 125 ~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~-~~~~~L~~~i 170 (521)
+|+++||+++|++|. .....|.|. ++.++|+.||
T Consensus 75 ~v~~~Pti~~f~~~~------------~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 75 QLKSFPTILFFPKNS------------RQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CCCcCCEEEEEcCCC------------CCceeccCCCCCHHHHHhhC
Confidence 999999999998752 123568884 8999999885
No 24
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.71 E-value=6.2e-17 Score=147.81 Aligned_cols=89 Identities=22% Similarity=0.457 Sum_probs=78.4
Q ss_pred cCcceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhC
Q 009987 45 VDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (521)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f 124 (521)
+..+.+++.++|++.+...++++++|+|||+||++|++++|.++++++++.+ ..+.|++||| +++++++++|
T Consensus 27 ~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~------~~v~f~~VDv--d~~~~la~~~ 98 (152)
T cd02962 27 PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN------NNLKFGKIDI--GRFPNVAEKF 98 (152)
T ss_pred CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc------CCeEEEEEEC--CCCHHHHHHc
Confidence 4568899999999988766667899999999999999999999999999863 2499999998 5688999999
Q ss_pred CCCc------CceEEEecCCccc
Q 009987 125 SVGH------YPMLLWGSPSKFV 141 (521)
Q Consensus 125 ~I~~------yPTl~~f~~g~~~ 141 (521)
+|++ +||+++|++|+..
T Consensus 99 ~V~~~~~v~~~PT~ilf~~Gk~v 121 (152)
T cd02962 99 RVSTSPLSKQLPTIILFQGGKEV 121 (152)
T ss_pred CceecCCcCCCCEEEEEECCEEE
Confidence 9988 9999999988644
No 25
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.70 E-value=4.2e-17 Score=141.59 Aligned_cols=102 Identities=12% Similarity=0.244 Sum_probs=85.2
Q ss_pred ecCcccHHHHH-hcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCc
Q 009987 50 ELNATNFDAVL-RDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGH 128 (521)
Q Consensus 50 ~L~~~~f~~~l-~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~ 128 (521)
.++..+|++.+ ....+++++|.||||||++|+.+.|.++++++.+.+ ..+.++.|||+ .+..++++|+|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~------~~v~~~~vd~d--~~~~l~~~~~V~~ 79 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP------LGVGIATVNAG--HERRLARKLGAHS 79 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh------cCceEEEEecc--ccHHHHHHcCCcc
Confidence 45778887644 334568999999999999999999999999999963 24889999994 5789999999999
Q ss_pred CceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHH
Q 009987 129 YPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (521)
Q Consensus 129 yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~ 172 (521)
+||+++|++|+. +..+.|..+.+.|.+||.+
T Consensus 80 ~Pt~~i~~~g~~-------------~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 80 VPAIVGIINGQV-------------TFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred CCEEEEEECCEE-------------EEEecCCCCHHHHHHHHhc
Confidence 999999988743 3456788999999999875
No 26
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.70 E-value=6.9e-17 Score=137.51 Aligned_cols=103 Identities=25% Similarity=0.565 Sum_probs=88.6
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCC
Q 009987 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG 127 (521)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~ 127 (521)
++++++.+|+..+.+. ++++|.|||+||++|+++.|.++++++.+.+. +.+.++.+||+.+++..++++|+|+
T Consensus 2 ~~~l~~~~~~~~~~~~--~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~-----~~~~~~~id~~~~~~~~~~~~~~i~ 74 (104)
T cd02997 2 VVHLTDEDFRKFLKKE--KHVLVMFYAPWCGHCKKMKPEFTKAATELKED-----GKGVLAAVDCTKPEHDALKEEYNVK 74 (104)
T ss_pred eEEechHhHHHHHhhC--CCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC-----CceEEEEEECCCCccHHHHHhCCCc
Confidence 6788999999998775 57899999999999999999999999998642 3588999999765589999999999
Q ss_pred cCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHH
Q 009987 128 HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (521)
Q Consensus 128 ~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i 170 (521)
++||+++|++|+. +..+.|..+.+.|.+||
T Consensus 75 ~~Pt~~~~~~g~~-------------~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 75 GFPTFKYFENGKF-------------VEKYEGERTAEDIIEFM 104 (104)
T ss_pred cccEEEEEeCCCe-------------eEEeCCCCCHHHHHhhC
Confidence 9999999988743 34678889999998875
No 27
>PTZ00102 disulphide isomerase; Provisional
Probab=99.70 E-value=1.4e-16 Score=172.19 Aligned_cols=112 Identities=27% Similarity=0.618 Sum_probs=97.2
Q ss_pred cCcceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhC
Q 009987 45 VDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (521)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f 124 (521)
.+.+..|+.++|+..+.++ +.++|+|||+||++|+++.|.|+++++.+++.+ ..+.++.|||+ ++.++|++|
T Consensus 31 ~~~v~~l~~~~f~~~i~~~--~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~----~~i~~~~vd~~--~~~~l~~~~ 102 (477)
T PTZ00102 31 SEHVTVLTDSTFDKFITEN--EIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKK----SEIVLASVDAT--EEMELAQEF 102 (477)
T ss_pred CCCcEEcchhhHHHHHhcC--CcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcC----CcEEEEEEECC--CCHHHHHhc
Confidence 3568999999999998764 679999999999999999999999999886432 46999999995 678999999
Q ss_pred CCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcccCc
Q 009987 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSY 178 (521)
Q Consensus 125 ~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~~~~ 178 (521)
+|++|||+++|.+|+ .+ .|.|.++.+.|.+|+.+.++..+
T Consensus 103 ~i~~~Pt~~~~~~g~-------------~~-~y~g~~~~~~l~~~l~~~~~~~~ 142 (477)
T PTZ00102 103 GVRGYPTIKFFNKGN-------------PV-NYSGGRTADGIVSWIKKLTGPAV 142 (477)
T ss_pred CCCcccEEEEEECCc-------------eE-EecCCCCHHHHHHHHHHhhCCCc
Confidence 999999999998763 12 68899999999999999987654
No 28
>PRK09381 trxA thioredoxin; Provisional
Probab=99.70 E-value=1.3e-16 Score=137.69 Aligned_cols=107 Identities=18% Similarity=0.395 Sum_probs=91.7
Q ss_pred cCcceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhC
Q 009987 45 VDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (521)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f 124 (521)
++.++++++++|++.+.+. +++++|+||++||++|+.+.|.++++++.+. +.+.++.+||+ .+..++++|
T Consensus 2 ~~~v~~~~~~~~~~~v~~~-~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~-------~~~~~~~vd~~--~~~~~~~~~ 71 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKA-DGAILVDFWAEWCGPCKMIAPILDEIADEYQ-------GKLTVAKLNID--QNPGTAPKY 71 (109)
T ss_pred CCcceeeChhhHHHHHhcC-CCeEEEEEECCCCHHHHHHhHHHHHHHHHhC-------CCcEEEEEECC--CChhHHHhC
Confidence 4568999999999877653 4789999999999999999999999999986 35899999994 578899999
Q ss_pred CCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhc
Q 009987 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (521)
Q Consensus 125 ~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l 174 (521)
+|+++||+++|++|+.. ..+.|..+.+.|.++|.+++
T Consensus 72 ~v~~~Pt~~~~~~G~~~-------------~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 72 GIRGIPTLLLFKNGEVA-------------ATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred CCCcCCEEEEEeCCeEE-------------EEecCCCCHHHHHHHHHHhc
Confidence 99999999999887432 45678888999999998875
No 29
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.69 E-value=5.6e-17 Score=140.24 Aligned_cols=80 Identities=15% Similarity=0.261 Sum_probs=71.3
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceE
Q 009987 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPML 132 (521)
Q Consensus 53 ~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl 132 (521)
.++|++.+....+++++|+|||+|||||+.+.|.++++++++. +.+.|+.||+ |++++++++|+|+++||+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~-------~~v~f~kVDv--D~~~~la~~~~V~~iPTf 72 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVS-------NFAVIYLVDI--DEVPDFNKMYELYDPPTV 72 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHcc-------CceEEEEEEC--CCCHHHHHHcCCCCCCEE
Confidence 4678888876556899999999999999999999999999985 4589999998 578999999999999999
Q ss_pred EEecCCccc
Q 009987 133 LWGSPSKFV 141 (521)
Q Consensus 133 ~~f~~g~~~ 141 (521)
++|++|+..
T Consensus 73 ~~fk~G~~v 81 (114)
T cd02954 73 MFFFRNKHM 81 (114)
T ss_pred EEEECCEEE
Confidence 999998654
No 30
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=4.8e-17 Score=171.26 Aligned_cols=124 Identities=20% Similarity=0.384 Sum_probs=103.3
Q ss_pred hhhhhccCCCCccccC--cceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEE
Q 009987 31 AILRSLGDTEKKVEVD--HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMT 108 (521)
Q Consensus 31 ~~~~~~~~~~~p~~~~--~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~ 108 (521)
+..+.+++++.|...+ +|..+.++||++++.+.. +-|||+|||||||||++++|.|++||+.+++. +.|.++
T Consensus 349 k~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de~-KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~-----~~vviA 422 (493)
T KOG0190|consen 349 KVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDEG-KDVLVEFYAPWCGHCKALAPIYEELAEKYKDD-----ENVVIA 422 (493)
T ss_pred ccccccccCCCCcccccCCeEEEeecCHHHHhhccc-cceEEEEcCcccchhhhhhhHHHHHHHHhcCC-----CCcEEE
Confidence 4556778888886664 799999999999998764 66899999999999999999999999999863 569999
Q ss_pred EeeccccccHHHHHhCCCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcc
Q 009987 109 RVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (521)
Q Consensus 109 ~VDc~~d~~~~l~~~f~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~ 175 (521)
++|.+..+- ....|.+||||++|+.|.- +.+..|.|.|+.++|..||.++-.
T Consensus 423 KmDaTaNd~----~~~~~~~fPTI~~~pag~k-----------~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 423 KMDATANDV----PSLKVDGFPTILFFPAGHK-----------SNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred EeccccccC----ccccccccceEEEecCCCC-----------CCCcccCCCcchHHHHhhhccCCC
Confidence 999875332 3456888999999998732 345678999999999999988754
No 31
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.68 E-value=2.3e-16 Score=134.19 Aligned_cols=104 Identities=26% Similarity=0.528 Sum_probs=87.7
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCC
Q 009987 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (521)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I 126 (521)
+|.+|++++|++.+.+.. ++++|.|||+||++|+.+.|.|+++++.+++. ..+.++.+||+ ++ +++..+++
T Consensus 1 ~v~~l~~~~f~~~i~~~~-~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-----~~~~~~~id~~--~~-~~~~~~~~ 71 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSD-KDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-----DNVVIAKMDAT--AN-DVPSEFVV 71 (104)
T ss_pred CeEEEchhhhHHHHhCCC-CcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-----CCEEEEEEeCc--ch-hhhhhccC
Confidence 478899999999988764 77899999999999999999999999998642 35999999995 33 68899999
Q ss_pred CcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHH
Q 009987 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (521)
Q Consensus 127 ~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i 170 (521)
.++||+++|++|+. .....|.|..+.++|.+||
T Consensus 72 ~~~Pt~~~~~~~~~-----------~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 72 DGFPTILFFPAGDK-----------SNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCCCEEEEEcCCCc-----------CCceEccCCcCHHHHHhhC
Confidence 99999999988741 1235688999999999885
No 32
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.68 E-value=2.1e-16 Score=135.26 Aligned_cols=98 Identities=17% Similarity=0.229 Sum_probs=78.0
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccc-cHHHHHhCCCCcCc
Q 009987 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI-NTNLCDKFSVGHYP 130 (521)
Q Consensus 52 ~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~-~~~l~~~f~I~~yP 130 (521)
+.++|++.+.+.+++++||+|||+||++|+.++|.++++++++. .+.|+.||++.+. ..+++++|+|+++|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--------~v~~~~vd~d~~~~~~~l~~~~~V~~~P 73 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--------DVVFLLVNGDENDSTMELCRREKIIEVP 73 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--------CCEEEEEECCCChHHHHHHHHcCCCcCC
Confidence 45788999987767999999999999999999999999999883 3789999985321 24899999999999
Q ss_pred eEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHH
Q 009987 131 MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWIN 171 (521)
Q Consensus 131 Tl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~ 171 (521)
|+++|++|+.. ..+.| ...+.|.+-+.
T Consensus 74 t~~~~~~G~~v-------------~~~~G-~~~~~l~~~~~ 100 (103)
T cd02985 74 HFLFYKDGEKI-------------HEEEG-IGPDELIGDVL 100 (103)
T ss_pred EEEEEeCCeEE-------------EEEeC-CCHHHHHHHHH
Confidence 99999888543 44555 45566665553
No 33
>PHA02278 thioredoxin-like protein
Probab=99.68 E-value=1.7e-16 Score=135.75 Aligned_cols=95 Identities=13% Similarity=0.139 Sum_probs=76.3
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccc--cHHHHHhCCCCcCc
Q 009987 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFSVGHYP 130 (521)
Q Consensus 53 ~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~--~~~l~~~f~I~~yP 130 (521)
.++|++.+.+ +++++|+|||+|||||+.+.|.++++++++. ..+.|+.||++.+. +.+++++|+|+++|
T Consensus 4 ~~~~~~~i~~--~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~-------~~~~~~~vdvd~~~~d~~~l~~~~~I~~iP 74 (103)
T PHA02278 4 LVDLNTAIRQ--KKDVIVMITQDNCGKCEILKSVIPMFQESGD-------IKKPILTLNLDAEDVDREKAVKLFDIMSTP 74 (103)
T ss_pred HHHHHHHHhC--CCcEEEEEECCCCHHHHhHHHHHHHHHhhhc-------CCceEEEEECCccccccHHHHHHCCCcccc
Confidence 4678888854 4789999999999999999999999998754 23668889985322 36899999999999
Q ss_pred eEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHH
Q 009987 131 MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTW 169 (521)
Q Consensus 131 Tl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~ 169 (521)
|+++|++|+. +.++.|..+.+.|.++
T Consensus 75 T~i~fk~G~~-------------v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 75 VLIGYKDGQL-------------VKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEEEEECCEE-------------EEEEeCCCCHHHHHhh
Confidence 9999998843 3556787888777664
No 34
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.67 E-value=3.5e-16 Score=132.43 Aligned_cols=102 Identities=28% Similarity=0.614 Sum_probs=87.6
Q ss_pred cCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCc
Q 009987 51 LNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYP 130 (521)
Q Consensus 51 L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yP 130 (521)
|++++|+..+.+ +++++|.||++||++|+.+.|.++++++.+.+. +.+.++.+|| +++..++++|+|+++|
T Consensus 1 l~~~~~~~~~~~--~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~-----~~~~~~~~d~--~~~~~~~~~~~i~~~P 71 (102)
T TIGR01126 1 LTASNFDDIVLS--NKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD-----PDIVLAKVDA--TAEKDLASRFGVSGFP 71 (102)
T ss_pred CchhhHHHHhcc--CCcEEEEEECCCCHHHHhhChHHHHHHHHhccC-----CceEEEEEEc--cchHHHHHhCCCCcCC
Confidence 577899998873 578999999999999999999999999998642 2599999999 4689999999999999
Q ss_pred eEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhc
Q 009987 131 MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (521)
Q Consensus 131 Tl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l 174 (521)
|+++|++|.. +..|.|..+.++|.+||.+++
T Consensus 72 ~~~~~~~~~~-------------~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 72 TIKFFPKGKK-------------PVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred EEEEecCCCc-------------ceeecCCCCHHHHHHHHHhcC
Confidence 9999987632 356889999999999998753
No 35
>PRK10996 thioredoxin 2; Provisional
Probab=99.66 E-value=7.5e-16 Score=139.21 Aligned_cols=106 Identities=22% Similarity=0.501 Sum_probs=91.1
Q ss_pred cCcceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhC
Q 009987 45 VDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (521)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f 124 (521)
...+++++.++|++.+.+ +++++|.|||+||++|+.+.|.++++++++. +.+.++.||+ +++++++++|
T Consensus 34 ~~~~i~~~~~~~~~~i~~--~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~-------~~v~~~~vd~--~~~~~l~~~~ 102 (139)
T PRK10996 34 DGEVINATGETLDKLLQD--DLPVVIDFWAPWCGPCRNFAPIFEDVAAERS-------GKVRFVKVNT--EAERELSARF 102 (139)
T ss_pred CCCCEEcCHHHHHHHHhC--CCeEEEEEECCCCHHHHHHHHHHHHHHHHhC-------CCeEEEEEeC--CCCHHHHHhc
Confidence 345778899999998865 4789999999999999999999999999875 4589999998 5688999999
Q ss_pred CCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhc
Q 009987 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (521)
Q Consensus 125 ~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l 174 (521)
+|+++||+++|++|+. +..+.|..+.+.|.+|+++.+
T Consensus 103 ~V~~~Ptlii~~~G~~-------------v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 103 RIRSIPTIMIFKNGQV-------------VDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred CCCccCEEEEEECCEE-------------EEEEcCCCCHHHHHHHHHHhC
Confidence 9999999999988743 356788899999999998753
No 36
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.66 E-value=7e-16 Score=131.25 Aligned_cols=103 Identities=32% Similarity=0.630 Sum_probs=87.3
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccc-cHHHHHhCCC
Q 009987 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI-NTNLCDKFSV 126 (521)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~-~~~l~~~f~I 126 (521)
++++++++|++.+.+. +++++|.|||+||++|+.+.|.++++++.+... +.+.++.+||. . +.++|++|+|
T Consensus 2 ~~~l~~~~~~~~~~~~-~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~-----~~~~~~~id~~--~~~~~~~~~~~i 73 (105)
T cd02998 2 VVELTDSNFDKVVGDD-KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE-----DDVVIAKVDAD--EANKDLAKKYGV 73 (105)
T ss_pred eEEcchhcHHHHhcCC-CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC-----CCEEEEEEECC--CcchhhHHhCCC
Confidence 6788999999988665 468999999999999999999999999998632 45999999994 4 7899999999
Q ss_pred CcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHH
Q 009987 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (521)
Q Consensus 127 ~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i 170 (521)
+++||+++|.+|. .....+.|.++.++|.+||
T Consensus 74 ~~~P~~~~~~~~~------------~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 74 SGFPTLKFFPKGS------------TEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CCcCEEEEEeCCC------------CCccccCCccCHHHHHhhC
Confidence 9999999998762 1234578999999999885
No 37
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.65 E-value=7.4e-16 Score=163.34 Aligned_cols=111 Identities=16% Similarity=0.387 Sum_probs=90.8
Q ss_pred ccCcceecCcccHHHHHh-cCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHH
Q 009987 44 EVDHAVELNATNFDAVLR-DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCD 122 (521)
Q Consensus 44 ~~~~v~~L~~~~f~~~l~-~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~ 122 (521)
.+..|++|+.+||+..+. ...++++||+||||||++|+.+.|.|+++|+++.+ ..+.|+.|||+.+.+...++
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~------~~v~~~kVdvD~~~~~~~~~ 422 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAG------SGVKVAKFRADGDQKEFAKQ 422 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc------CCcEEEEEECCCCccHHHHH
Confidence 345799999999999986 45568899999999999999999999999999864 23889999996443344457
Q ss_pred hCCCCcCceEEEecCCcccCCCCCCCccchhhhhcc-ccCCHHHHHHHHHH
Q 009987 123 KFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALE-DWQTADGLLTWINK 172 (521)
Q Consensus 123 ~f~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~-G~~~~~~L~~~i~~ 172 (521)
+|+|++|||+++|++|.. ....|. |.++.++|+.||+.
T Consensus 423 ~~~I~~~PTii~Fk~g~~------------~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 423 ELQLGSFPTILFFPKHSS------------RPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred HcCCCccceEEEEECCCC------------CceeCCCCCCCHHHHHHHHHh
Confidence 999999999999988732 123476 57999999999974
No 38
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.64 E-value=1e-15 Score=130.74 Aligned_cols=97 Identities=14% Similarity=0.368 Sum_probs=80.1
Q ss_pred cCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCc
Q 009987 51 LNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYP 130 (521)
Q Consensus 51 L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yP 130 (521)
-+.++|++.+.+ +++++|+|||+||++|+.+.|.++++++.+.+ ..+.|+.+|++ +.+++++|+|+++|
T Consensus 5 ~~~~~~~~~i~~--~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~------~~~~~~~vd~d---~~~~~~~~~v~~~P 73 (102)
T cd02948 5 NNQEEWEELLSN--KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD------DLLHFATAEAD---TIDTLKRYRGKCEP 73 (102)
T ss_pred cCHHHHHHHHcc--CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC------CcEEEEEEeCC---CHHHHHHcCCCcCc
Confidence 467889998864 47899999999999999999999999999863 24789999984 67899999999999
Q ss_pred eEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHH
Q 009987 131 MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (521)
Q Consensus 131 Tl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~ 172 (521)
|+++|++|+.. .+..| .+.+.|.++|++
T Consensus 74 t~~~~~~g~~~-------------~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 74 TFLFYKNGELV-------------AVIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEEEEECCEEE-------------EEEec-CChHHHHHHHhh
Confidence 99999887432 34555 477888888864
No 39
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.63 E-value=2.1e-15 Score=129.14 Aligned_cols=97 Identities=19% Similarity=0.437 Sum_probs=79.6
Q ss_pred ccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEE
Q 009987 54 TNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLL 133 (521)
Q Consensus 54 ~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~ 133 (521)
++|++.. + +++++|.|||+||++|+++.|.|+++++.+++.+ ..+.++.+||+ .+.+++++|+|.++||++
T Consensus 7 ~~~~~~~-~--~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~----~~~~~~~vd~~--~~~~~~~~~~I~~~Pt~~ 77 (104)
T cd03000 7 DSFKDVR-K--EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSG----SPVRVGKLDAT--AYSSIASEFGVRGYPTIK 77 (104)
T ss_pred hhhhhhc-c--CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcC----CcEEEEEEECc--cCHhHHhhcCCccccEEE
Confidence 6777643 2 3678999999999999999999999999986422 35899999994 578999999999999999
Q ss_pred EecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHh
Q 009987 134 WGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (521)
Q Consensus 134 ~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~ 173 (521)
+|.+|. ...+.|.++.++|.+|+++.
T Consensus 78 l~~~~~--------------~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 78 LLKGDL--------------AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred EEcCCC--------------ceeecCCCCHHHHHHHHHhh
Confidence 996542 13477889999999999763
No 40
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=2.7e-15 Score=128.67 Aligned_cols=90 Identities=21% Similarity=0.464 Sum_probs=72.3
Q ss_pred HHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEEecCC
Q 009987 59 VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPS 138 (521)
Q Consensus 59 ~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~f~~g 138 (521)
...+.+++.++|+|||+|||||+.+.|.+++||.++. + +.|++||++. ..+++++++|+..||+.+|++|
T Consensus 15 ~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~-------~-v~Flkvdvde--~~~~~~~~~V~~~PTf~f~k~g 84 (106)
T KOG0907|consen 15 SAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP-------D-VVFLKVDVDE--LEEVAKEFNVKAMPTFVFYKGG 84 (106)
T ss_pred HHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCC-------C-CEEEEEeccc--CHhHHHhcCceEeeEEEEEECC
Confidence 3344446889999999999999999999999999985 3 8999999953 9999999999999999999887
Q ss_pred cccCCCCCCCccchhhhhccccCCHHHHHHHHHH
Q 009987 139 KFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (521)
Q Consensus 139 ~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~ 172 (521)
+. +..+.| .+.+.|.+.|.+
T Consensus 85 ~~-------------~~~~vG-a~~~~l~~~i~~ 104 (106)
T KOG0907|consen 85 EE-------------VDEVVG-ANKAELEKKIAK 104 (106)
T ss_pred EE-------------EEEEec-CCHHHHHHHHHh
Confidence 43 334454 344466666654
No 41
>PLN02309 5'-adenylylsulfate reductase
Probab=99.60 E-value=4.3e-15 Score=157.46 Aligned_cols=111 Identities=18% Similarity=0.426 Sum_probs=91.2
Q ss_pred ccCcceecCcccHHHHHh-cCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHH
Q 009987 44 EVDHAVELNATNFDAVLR-DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCD 122 (521)
Q Consensus 44 ~~~~v~~L~~~~f~~~l~-~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~ 122 (521)
....|++|+.++|++.+. ...++++||+||||||++|+++.|.|+++++.+.+ ..+.|++|||+ ..+.++|+
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~------~~V~f~kVD~d-~~~~~la~ 415 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG------SGVKVAKFRAD-GDQKEFAK 415 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc------CCeEEEEEECC-CcchHHHH
Confidence 345799999999999875 34468899999999999999999999999999864 24999999995 24678886
Q ss_pred -hCCCCcCceEEEecCCcccCCCCCCCccchhhhhcc-ccCCHHHHHHHHHHh
Q 009987 123 -KFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALE-DWQTADGLLTWINKQ 173 (521)
Q Consensus 123 -~f~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~-G~~~~~~L~~~i~~~ 173 (521)
+|+|++|||+++|++|.. ....|. |.++.++|++||++.
T Consensus 416 ~~~~I~~~PTil~f~~g~~------------~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 416 QELQLGSFPTILLFPKNSS------------RPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred hhCCCceeeEEEEEeCCCC------------CeeecCCCCcCHHHHHHHHHHh
Confidence 699999999999987631 123476 479999999999863
No 42
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.59 E-value=7.9e-15 Score=123.56 Aligned_cols=101 Identities=24% Similarity=0.462 Sum_probs=85.0
Q ss_pred cCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCc
Q 009987 51 LNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYP 130 (521)
Q Consensus 51 L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yP 130 (521)
++.++|.+.+.+. +++++|.||++||++|+.+.|.++++++++. +.+.++.||++ ++..++++|+|.++|
T Consensus 1 i~~~~~~~~~~~~-~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~vd~~--~~~~~~~~~~v~~~P 70 (101)
T TIGR01068 1 LTDANFDETIASS-DKPVLVDFWAPWCGPCKMIAPILEELAKEYE-------GKVKFVKLNVD--ENPDIAAKYGIRSIP 70 (101)
T ss_pred CCHHHHHHHHhhc-CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc-------CCeEEEEEECC--CCHHHHHHcCCCcCC
Confidence 3567888888764 4689999999999999999999999998885 35999999984 678899999999999
Q ss_pred eEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhc
Q 009987 131 MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (521)
Q Consensus 131 Tl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l 174 (521)
|+++|++|+. +..+.|..+.+.|.+||++.+
T Consensus 71 ~~~~~~~g~~-------------~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 71 TLLLFKNGKE-------------VDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred EEEEEeCCcE-------------eeeecCCCCHHHHHHHHHhhC
Confidence 9999987642 245668888999999998753
No 43
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.59 E-value=7e-15 Score=132.04 Aligned_cols=102 Identities=10% Similarity=0.144 Sum_probs=82.7
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCce
Q 009987 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPM 131 (521)
Q Consensus 52 ~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPT 131 (521)
+..+|++.+.+..+++++|.|||+|||||+.+.|.++++|+++. +.+.|+.||+ |+++++++.|+|++.||
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~-------~~~~~~kVDV--De~~dla~~y~I~~~~t 80 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIK-------NFAVIYLVDI--TEVPDFNTMYELYDPCT 80 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcC-------CceEEEEEEC--CCCHHHHHHcCccCCCc
Confidence 46789998876667899999999999999999999999999985 4588899998 57999999999998876
Q ss_pred EE-EecCCcccCCCCCCCccchhhhhccc--------cCCHHHHHHHHHHhc
Q 009987 132 LL-WGSPSKFVAGSWEPNQEKKEIRALED--------WQTADGLLTWINKQT 174 (521)
Q Consensus 132 l~-~f~~g~~~~~~~~~~~~~~~v~~~~G--------~~~~~~L~~~i~~~l 174 (521)
++ +|++|+. .+.+..| ..+.++|++.++..+
T Consensus 81 ~~~ffk~g~~------------~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 81 VMFFFRNKHI------------MIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred EEEEEECCeE------------EEEEecccccccccccCCHHHHHHHHHHHH
Confidence 66 8888752 1223334 467788888887655
No 44
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.58 E-value=1.1e-14 Score=122.08 Aligned_cols=100 Identities=35% Similarity=0.739 Sum_probs=84.7
Q ss_pred ecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcC
Q 009987 50 ELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHY 129 (521)
Q Consensus 50 ~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~y 129 (521)
+++.++|.+.+.+.+ +++|.||++||++|+.+.|.|+++++.++. .+.+.++.+||+ ++..++++|+|+++
T Consensus 2 ~l~~~~~~~~i~~~~--~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~--~~~~~~~~~~i~~~ 72 (101)
T cd02961 2 ELTDDNFDELVKDSK--DVLVEFYAPWCGHCKALAPEYEKLAKELKG-----DGKVVVAKVDCT--ANNDLCSEYGVRGY 72 (101)
T ss_pred cccHHHHHHHHhCCC--cEEEEEECCCCHHHHhhhHHHHHHHHHhcc-----CCceEEEEeecc--chHHHHHhCCCCCC
Confidence 578889999998863 789999999999999999999999999851 146999999994 58999999999999
Q ss_pred ceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHH
Q 009987 130 PMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (521)
Q Consensus 130 PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i 170 (521)
||+++|+++. .....|.|..+.++|.+|+
T Consensus 73 Pt~~~~~~~~------------~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 73 PTIKLFPNGS------------KEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CEEEEEcCCC------------cccccCCCCcCHHHHHhhC
Confidence 9999998762 1235678888999988874
No 45
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.58 E-value=7.8e-15 Score=157.46 Aligned_cols=112 Identities=27% Similarity=0.550 Sum_probs=96.4
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCC
Q 009987 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (521)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I 126 (521)
.|..|+.++|+..+.+. ++++|.|||+||++|+++.|.|.++++.+.+.+ +.+.++.|||+ ++.++|++|+|
T Consensus 2 ~v~~l~~~~~~~~i~~~--~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~----~~v~~~~vd~~--~~~~l~~~~~i 73 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSH--EFVLVEFYAPWCGHCKSLAPEYEKAADELKKKG----PPIKLAKVDAT--EEKDLAQKYGV 73 (462)
T ss_pred CceECCHHHHHHHHhcC--CCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcC----CceEEEEEECC--CcHHHHHhCCC
Confidence 47899999999999764 678999999999999999999999999987533 45999999994 57899999999
Q ss_pred CcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcccCc
Q 009987 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSY 178 (521)
Q Consensus 127 ~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~~~~ 178 (521)
++|||+++|++|+. .+..|.|.++.+.|.+|+.+.++..+
T Consensus 74 ~~~Pt~~~~~~g~~------------~~~~~~g~~~~~~l~~~i~~~~~~~~ 113 (462)
T TIGR01130 74 SGYPTLKIFRNGED------------SVSDYNGPRDADGIVKYMKKQSGPAV 113 (462)
T ss_pred ccccEEEEEeCCcc------------ceeEecCCCCHHHHHHHHHHhcCCCc
Confidence 99999999987742 13568899999999999999987554
No 46
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.58 E-value=6.8e-15 Score=128.09 Aligned_cols=84 Identities=17% Similarity=0.311 Sum_probs=73.2
Q ss_pred cceecCcccHHHHHhcCC-CCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCC
Q 009987 47 HAVELNATNFDAVLRDTP-ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFS 125 (521)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~-~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~ 125 (521)
.+.+++.++|.+.+.+.+ +++++|.||||||++|+.+.|.++++++++. .+.|+.||++ ++ .++++|+
T Consensus 5 ~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--------~v~f~~vd~~--~~-~l~~~~~ 73 (113)
T cd02957 5 EVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP--------ETKFVKINAE--KA-FLVNYLD 73 (113)
T ss_pred eEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--------CcEEEEEEch--hh-HHHHhcC
Confidence 467888999999887653 4789999999999999999999999999974 3789999984 45 9999999
Q ss_pred CCcCceEEEecCCccc
Q 009987 126 VGHYPMLLWGSPSKFV 141 (521)
Q Consensus 126 I~~yPTl~~f~~g~~~ 141 (521)
|+++||+++|++|+..
T Consensus 74 i~~~Pt~~~f~~G~~v 89 (113)
T cd02957 74 IKVLPTLLVYKNGELI 89 (113)
T ss_pred CCcCCEEEEEECCEEE
Confidence 9999999999998654
No 47
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.58 E-value=1.5e-14 Score=131.11 Aligned_cols=102 Identities=16% Similarity=0.287 Sum_probs=82.8
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceE
Q 009987 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPML 132 (521)
Q Consensus 53 ~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl 132 (521)
...|+..+.. ++++||+|||+||++|+.+.|.++++++.+. +.+.|+.||++.+...+++++|+|+++||+
T Consensus 10 ~~~~~~a~~~--gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~-------~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~ 80 (142)
T cd02950 10 STPPEVALSN--GKPTLVEFYADWCTVCQEMAPDVAKLKQKYG-------DQVNFVMLNVDNPKWLPEIDRYRVDGIPHF 80 (142)
T ss_pred cCCHHHHHhC--CCEEEEEEECCcCHHHHHhHHHHHHHHHHhc-------cCeeEEEEEcCCcccHHHHHHcCCCCCCEE
Confidence 4567777654 4789999999999999999999999999985 346777777754556789999999999999
Q ss_pred EEec-CCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhccc
Q 009987 133 LWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (521)
Q Consensus 133 ~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~~ 176 (521)
++|. +|+. +..+.|..+.+.|.++|.+.+..
T Consensus 81 v~~~~~G~~-------------v~~~~G~~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 81 VFLDREGNE-------------EGQSIGLQPKQVLAQNLDALVAG 112 (142)
T ss_pred EEECCCCCE-------------EEEEeCCCCHHHHHHHHHHHHcC
Confidence 9994 5643 34567888899999999987753
No 48
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.58 E-value=8.5e-15 Score=125.89 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=81.9
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCC--ChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhC
Q 009987 47 HAVELNATNFDAVLRDTPATYAVVEFFANW--CPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (521)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vlV~FyA~W--Cg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f 124 (521)
....+|..||++.+.. +.+++|.|||+| ||+|+.++|.++++++++. +.+.|+.||+ +++++++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~--~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~-------~~v~f~kVdi--d~~~~la~~f 79 (111)
T cd02965 11 GWPRVDAATLDDWLAA--GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFP-------GRFRAAVVGR--ADEQALAARF 79 (111)
T ss_pred CCcccccccHHHHHhC--CCCEEEEecCCcccCcchhhhHhHHHHHHHHCC-------CcEEEEEEEC--CCCHHHHHHc
Confidence 4668899999988844 366899999997 9999999999999999986 4689999998 4678999999
Q ss_pred CCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHH
Q 009987 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLL 167 (521)
Q Consensus 125 ~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~ 167 (521)
+|+++||+++|++|+.. ..+.|..+.+++.
T Consensus 80 ~V~sIPTli~fkdGk~v-------------~~~~G~~~~~e~~ 109 (111)
T cd02965 80 GVLRTPALLFFRDGRYV-------------GVLAGIRDWDEYV 109 (111)
T ss_pred CCCcCCEEEEEECCEEE-------------EEEeCccCHHHHh
Confidence 99999999999998544 3456777776664
No 49
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.57 E-value=3.4e-15 Score=144.88 Aligned_cols=92 Identities=15% Similarity=0.404 Sum_probs=79.5
Q ss_pred CCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEEecCCcccCCC
Q 009987 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGS 144 (521)
Q Consensus 65 ~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~f~~g~~~~~~ 144 (521)
+..++|+||||||+||+++.|.|.++.-.+++-+ -.|+++++||+ ..+.++.+|||+|||||++|+++.
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig----~PikVGKlDaT--~f~aiAnefgiqGYPTIk~~kgd~----- 111 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIG----LPIKVGKLDAT--RFPAIANEFGIQGYPTIKFFKGDH----- 111 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhcC----Cceeecccccc--cchhhHhhhccCCCceEEEecCCe-----
Confidence 4678999999999999999999999998887655 35999999996 589999999999999999998763
Q ss_pred CCCCccchhhhhccccCCHHHHHHHHHHhccc
Q 009987 145 WEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (521)
Q Consensus 145 ~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~~ 176 (521)
...|.|+|+.++|++|..+-.+.
T Consensus 112 ---------a~dYRG~R~Kd~iieFAhR~a~a 134 (468)
T KOG4277|consen 112 ---------AIDYRGGREKDAIIEFAHRCAAA 134 (468)
T ss_pred ---------eeecCCCccHHHHHHHHHhcccc
Confidence 24689999999999998765443
No 50
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.55 E-value=2e-14 Score=120.91 Aligned_cols=79 Identities=16% Similarity=0.451 Sum_probs=69.5
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceE
Q 009987 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPML 132 (521)
Q Consensus 53 ~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl 132 (521)
.++|++.+.+..+++++|.||++||++|+.+.|.++++++.+. +.+.++.+|+ +++.+++++|+|+++||+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~-------~~i~~~~vd~--~~~~~~~~~~~i~~~Pt~ 72 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAF-------PSVLFLSIEA--EELPEISEKFEITAVPTF 72 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhC-------CceEEEEEcc--ccCHHHHHhcCCccccEE
Confidence 4678888887666889999999999999999999999999973 4599999998 468899999999999999
Q ss_pred EEecCCcc
Q 009987 133 LWGSPSKF 140 (521)
Q Consensus 133 ~~f~~g~~ 140 (521)
++|.+|+.
T Consensus 73 ~~~~~g~~ 80 (97)
T cd02984 73 VFFRNGTI 80 (97)
T ss_pred EEEECCEE
Confidence 99988743
No 51
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.55 E-value=2.2e-14 Score=122.65 Aligned_cols=95 Identities=24% Similarity=0.364 Sum_probs=77.7
Q ss_pred ccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHH---HHHHHHhCCCCCCCCCeEEEEEeeccccc--cHHHHHhCCCCc
Q 009987 54 TNFDAVLRDTPATYAVVEFFANWCPACRNYKPQY---EKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFSVGH 128 (521)
Q Consensus 54 ~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~---~~lA~~~~~~~~~~~~~v~~~~VDc~~d~--~~~l~~~f~I~~ 128 (521)
+.|++.+.+. +++||.|||+||++|+.+.|.+ .++++.+. +.+.++.||++.+. +.+++++|+|++
T Consensus 2 ~~~~~~~~~~--k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-------~~~~~~~vd~~~~~~~~~~~~~~~~i~~ 72 (104)
T cd02953 2 AALAQALAQG--KPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK-------KDVVLLRADWTKNDPEITALLKRFGVFG 72 (104)
T ss_pred HHHHHHHHcC--CeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh-------CCeEEEEEecCCCCHHHHHHHHHcCCCC
Confidence 4677777654 7899999999999999999998 67888875 25899999985322 578999999999
Q ss_pred CceEEEecC--CcccCCCCCCCccchhhhhccccCCHHHHHHHH
Q 009987 129 YPMLLWGSP--SKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (521)
Q Consensus 129 yPTl~~f~~--g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i 170 (521)
+||+++|.+ | +.+.++.|..+.++|.++|
T Consensus 73 ~Pti~~~~~~~g-------------~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 73 PPTYLFYGPGGE-------------PEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCEEEEECCCCC-------------CCCcccccccCHHHHHHHh
Confidence 999999974 4 3345678999999998876
No 52
>PTZ00102 disulphide isomerase; Provisional
Probab=99.54 E-value=2.8e-14 Score=154.27 Aligned_cols=120 Identities=17% Similarity=0.402 Sum_probs=98.2
Q ss_pred cCCCCcc-ccCcceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecccc
Q 009987 37 GDTEKKV-EVDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK 115 (521)
Q Consensus 37 ~~~~~p~-~~~~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d 115 (521)
++++.|. ...++..+++++|++.+.+. ++++||.|||+||++|+.+.|.|+++|+.+.+. +.+.++.+||+
T Consensus 347 ~se~~p~~~~~~v~~l~~~~f~~~v~~~-~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~-----~~v~~~~id~~-- 418 (477)
T PTZ00102 347 KSEPIPEEQDGPVKVVVGNTFEEIVFKS-DKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN-----DSIIVAKMNGT-- 418 (477)
T ss_pred ccCCCCCCCCCCeEEecccchHHHHhcC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC-----CcEEEEEEECC--
Confidence 3444443 24569999999999987665 478999999999999999999999999998642 35899999984
Q ss_pred ccHHHHHhCCCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhccc
Q 009987 116 INTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (521)
Q Consensus 116 ~~~~l~~~f~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~~ 176 (521)
.+...+++|+|+++||+++|++|.. ....|.|.++.++|.+||+++...
T Consensus 419 ~~~~~~~~~~v~~~Pt~~~~~~~~~------------~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 419 ANETPLEEFSWSAFPTILFVKAGER------------TPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred CCccchhcCCCcccCeEEEEECCCc------------ceeEecCcCCHHHHHHHHHHcCCC
Confidence 5778899999999999999987631 123588999999999999998754
No 53
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.54 E-value=2.7e-14 Score=122.72 Aligned_cols=77 Identities=13% Similarity=0.157 Sum_probs=69.2
Q ss_pred ccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEE
Q 009987 54 TNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLL 133 (521)
Q Consensus 54 ~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~ 133 (521)
+.|++.+.+..+++++|.|+|+|||+|+.+.|.++++|+++. +.+.|+.||+ |+.+++++.|+|++.||++
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~-------~~~~f~kVDV--Dev~dva~~y~I~amPtfv 73 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLS-------KMASIYLVDV--DKVPVYTQYFDISYIPSTI 73 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHcc-------CceEEEEEec--cccHHHHHhcCceeCcEEE
Confidence 567888876667999999999999999999999999999985 3389999998 5799999999999999999
Q ss_pred EecCCc
Q 009987 134 WGSPSK 139 (521)
Q Consensus 134 ~f~~g~ 139 (521)
+|.+|+
T Consensus 74 ffkngk 79 (114)
T cd02986 74 FFFNGQ 79 (114)
T ss_pred EEECCc
Confidence 998875
No 54
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.53 E-value=4e-14 Score=123.35 Aligned_cols=82 Identities=16% Similarity=0.229 Sum_probs=72.0
Q ss_pred ceecCc-ccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCC
Q 009987 48 AVELNA-TNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (521)
Q Consensus 48 v~~L~~-~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I 126 (521)
+..++. ++|.+.+.+. ++++|.||++||++|+.+.|.++++++++. .+.|+.||+ +++.+++++|+|
T Consensus 6 v~~i~~~~~~~~~i~~~--~~vvV~f~a~~c~~C~~~~p~l~~la~~~~--------~i~f~~Vd~--~~~~~l~~~~~v 73 (113)
T cd02989 6 YREVSDEKEFFEIVKSS--ERVVCHFYHPEFFRCKIMDKHLEILAKKHL--------ETKFIKVNA--EKAPFLVEKLNI 73 (113)
T ss_pred eEEeCCHHHHHHHHhCC--CcEEEEEECCCCccHHHHHHHHHHHHHHcC--------CCEEEEEEc--ccCHHHHHHCCC
Confidence 556666 8999999764 679999999999999999999999999873 379999997 578899999999
Q ss_pred CcCceEEEecCCccc
Q 009987 127 GHYPMLLWGSPSKFV 141 (521)
Q Consensus 127 ~~yPTl~~f~~g~~~ 141 (521)
+++||+++|++|+..
T Consensus 74 ~~vPt~l~fk~G~~v 88 (113)
T cd02989 74 KVLPTVILFKNGKTV 88 (113)
T ss_pred ccCCEEEEEECCEEE
Confidence 999999999998654
No 55
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.53 E-value=2e-14 Score=140.11 Aligned_cols=109 Identities=27% Similarity=0.561 Sum_probs=94.4
Q ss_pred cCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCc
Q 009987 51 LNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYP 130 (521)
Q Consensus 51 L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yP 130 (521)
++.+|++.++... ..++|.|||+||+..+.++|.+++.|+.+++..+. +++..+.||| +.+..++.+|.|..||
T Consensus 1 lt~~N~~~il~s~--elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~--~kvvwg~VDc--d~e~~ia~ky~I~KyP 74 (375)
T KOG0912|consen 1 LTSENIDSILDSN--ELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPE--GKVVWGKVDC--DKEDDIADKYHINKYP 74 (375)
T ss_pred CccccHHHhhccc--eEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCC--cceEEEEccc--chhhHHhhhhccccCc
Confidence 4567888888763 78999999999999999999999999999865532 7899999999 4678999999999999
Q ss_pred eEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcccC
Q 009987 131 MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRS 177 (521)
Q Consensus 131 Tl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~~~ 177 (521)
|+++|.+|.... ..|.|.|+.+.|.+||++++...
T Consensus 75 TlKvfrnG~~~~------------rEYRg~RsVeaL~efi~kq~s~~ 109 (375)
T KOG0912|consen 75 TLKVFRNGEMMK------------REYRGQRSVEALIEFIEKQLSDP 109 (375)
T ss_pred eeeeeeccchhh------------hhhccchhHHHHHHHHHHHhccH
Confidence 999999986542 46899999999999999998654
No 56
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=9.8e-14 Score=132.10 Aligned_cols=103 Identities=21% Similarity=0.376 Sum_probs=87.5
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCce
Q 009987 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPM 131 (521)
Q Consensus 52 ~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPT 131 (521)
++..|+..+.....+.++|+|+|+|||||++.+|.|..|+.+|. ...|.+||+ |+.+.++..+||...||
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp--------~aVFlkVdV--d~c~~taa~~gV~amPT 77 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP--------GAVFLKVDV--DECRGTAATNGVNAMPT 77 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc--------ccEEEEEeH--HHhhchhhhcCcccCce
Confidence 45789999988878899999999999999999999999999994 478999997 67889999999999999
Q ss_pred EEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcccCc
Q 009987 132 LLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSY 178 (521)
Q Consensus 132 l~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~~~~ 178 (521)
+++|.+|.- +..+.| .++..|.+-|.++++.+.
T Consensus 78 Fiff~ng~k-------------id~~qG-Ad~~gLe~kv~~~~stsa 110 (288)
T KOG0908|consen 78 FIFFRNGVK-------------IDQIQG-ADASGLEEKVAKYASTSA 110 (288)
T ss_pred EEEEecCeE-------------eeeecC-CCHHHHHHHHHHHhccCc
Confidence 999998742 344554 678888888888876543
No 57
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.47 E-value=2.8e-13 Score=114.49 Aligned_cols=93 Identities=14% Similarity=0.324 Sum_probs=77.8
Q ss_pred HHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEEe
Q 009987 56 FDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWG 135 (521)
Q Consensus 56 f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~f 135 (521)
++..+.+. +++++|.||++||++|+.+.|.++++++++. +.+.++.+|+ ++++++.++++|.++||+++|
T Consensus 5 ~~~~~~~~-~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-------~~v~~~~id~--d~~~~l~~~~~v~~vPt~~i~ 74 (97)
T cd02949 5 LRKLYHES-DRLILVLYTSPTCGPCRTLKPILNKVIDEFD-------GAVHFVEIDI--DEDQEIAEAAGIMGTPTVQFF 74 (97)
T ss_pred HHHHHHhC-CCeEEEEEECCCChhHHHHHHHHHHHHHHhC-------CceEEEEEEC--CCCHHHHHHCCCeeccEEEEE
Confidence 34455553 5789999999999999999999999999985 3589999998 467899999999999999999
Q ss_pred cCCcccCCCCCCCccchhhhhccccCCHHHHHHHHH
Q 009987 136 SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWIN 171 (521)
Q Consensus 136 ~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~ 171 (521)
++|+ .+..+.|..+.++|.++++
T Consensus 75 ~~g~-------------~v~~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 75 KDKE-------------LVKEISGVKMKSEYREFIE 97 (97)
T ss_pred ECCe-------------EEEEEeCCccHHHHHHhhC
Confidence 8764 3456788889999988873
No 58
>PTZ00051 thioredoxin; Provisional
Probab=99.46 E-value=2.7e-13 Score=114.30 Aligned_cols=77 Identities=21% Similarity=0.537 Sum_probs=66.3
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceE
Q 009987 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPML 132 (521)
Q Consensus 53 ~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl 132 (521)
.++|+..+.. +++++|.||++||++|+.+.|.++++++++. .+.++.||+ +++..++++|+|+++||+
T Consensus 8 ~~~~~~~~~~--~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~--------~~~~~~vd~--~~~~~~~~~~~v~~~Pt~ 75 (98)
T PTZ00051 8 QAEFESTLSQ--NELVIVDFYAEWCGPCKRIAPFYEECSKEYT--------KMVFVKVDV--DELSEVAEKENITSMPTF 75 (98)
T ss_pred HHHHHHHHhc--CCeEEEEEECCCCHHHHHHhHHHHHHHHHcC--------CcEEEEEEC--cchHHHHHHCCCceeeEE
Confidence 4678877765 3789999999999999999999999999763 388999998 467899999999999999
Q ss_pred EEecCCccc
Q 009987 133 LWGSPSKFV 141 (521)
Q Consensus 133 ~~f~~g~~~ 141 (521)
++|++|+..
T Consensus 76 ~~~~~g~~~ 84 (98)
T PTZ00051 76 KVFKNGSVV 84 (98)
T ss_pred EEEeCCeEE
Confidence 999887543
No 59
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.45 E-value=3.8e-13 Score=126.13 Aligned_cols=110 Identities=15% Similarity=0.265 Sum_probs=85.7
Q ss_pred cCcceecCc-ccHHHHHhcCC-CCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHH
Q 009987 45 VDHAVELNA-TNFDAVLRDTP-ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCD 122 (521)
Q Consensus 45 ~~~v~~L~~-~~f~~~l~~~~-~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~ 122 (521)
...+.+++. ++|.+.+.+.. +.+++|.|||+||++|+.+.|.+++||+.+. .+.|++||++ ++ .++.
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--------~vkF~kVd~d--~~-~l~~ 129 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP--------AVKFCKIRAS--AT-GASD 129 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC--------CeEEEEEecc--ch-hhHH
Confidence 446888888 99999987643 4589999999999999999999999999873 4899999984 34 8999
Q ss_pred hCCCCcCceEEEecCCcccCCCCCCCccchhhh-hccccCCHHHHHHHHHH
Q 009987 123 KFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIR-ALEDWQTADGLLTWINK 172 (521)
Q Consensus 123 ~f~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~-~~~G~~~~~~L~~~i~~ 172 (521)
+|+|.++||+++|++|+....- ..+. ......+.++|..++.+
T Consensus 130 ~f~v~~vPTlllyk~G~~v~~~-------vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 130 EFDTDALPALLVYKGGELIGNF-------VRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred hCCCCCCCEEEEEECCEEEEEE-------echHHhcCCCCCHHHHHHHHHh
Confidence 9999999999999998755320 0011 12224677888777754
No 60
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.42 E-value=8.9e-13 Score=141.56 Aligned_cols=114 Identities=24% Similarity=0.471 Sum_probs=93.0
Q ss_pred cCcceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhC
Q 009987 45 VDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (521)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f 124 (521)
...+..|++.+|++.+.+. ++.+||.|||+||++|+.+.|.++++++.+++.+ ..+.++.+||+. + ++.. +
T Consensus 345 ~~~v~~l~~~~f~~~v~~~-~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~----~~i~~~~id~~~--n-~~~~-~ 415 (462)
T TIGR01130 345 EGPVKVLVGKNFDEIVLDE-TKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAE----SDVVIAKMDATA--N-DVPP-F 415 (462)
T ss_pred CCccEEeeCcCHHHHhccC-CCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCC----CcEEEEEEECCC--C-ccCC-C
Confidence 4568899999999998765 4789999999999999999999999999997421 369999999953 2 3444 9
Q ss_pred CCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcccCc
Q 009987 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSY 178 (521)
Q Consensus 125 ~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~~~~ 178 (521)
+|+++||+++|++|... ....+.|.++.+.|.+||.++...++
T Consensus 416 ~i~~~Pt~~~~~~~~~~-----------~~~~~~g~~~~~~l~~~l~~~~~~~~ 458 (462)
T TIGR01130 416 EVEGFPTIKFVPAGKKS-----------EPVPYDGDRTLEDFSKFIAKHATFPL 458 (462)
T ss_pred CccccCEEEEEeCCCCc-----------CceEecCcCCHHHHHHHHHhcCCCCC
Confidence 99999999999877421 12457899999999999999876543
No 61
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.39 E-value=1.8e-12 Score=112.97 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=77.0
Q ss_pred HHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEEe
Q 009987 56 FDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWG 135 (521)
Q Consensus 56 f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~f 135 (521)
|.+.+.+. ..++|.|||+||++|+.+.|.+++++..+ +.+.+..+|. +++++++++|+|+++||+++|
T Consensus 15 ~~~~l~~~--~~vvv~f~a~wC~~C~~~~~~l~~la~~~--------~~i~~~~vd~--d~~~~l~~~~~v~~vPt~~i~ 82 (113)
T cd02975 15 FFKEMKNP--VDLVVFSSKEGCQYCEVTKQLLEELSELS--------DKLKLEIYDF--DEDKEKAEKYGVERVPTTIFL 82 (113)
T ss_pred HHHHhCCC--eEEEEEeCCCCCCChHHHHHHHHHHHHhc--------CceEEEEEeC--CcCHHHHHHcCCCcCCEEEEE
Confidence 44545442 45789999999999999999999999875 2488999997 468999999999999999999
Q ss_pred cCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcc
Q 009987 136 SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (521)
Q Consensus 136 ~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~ 175 (521)
.+|.... . ..+.|..+.+++.++|...+.
T Consensus 83 ~~g~~~~----------~-~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 83 QDGGKDG----------G-IRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred eCCeecc----------e-EEEEecCchHHHHHHHHHHHh
Confidence 8763221 1 246788888999999887653
No 62
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.38 E-value=2.4e-12 Score=105.49 Aligned_cols=92 Identities=22% Similarity=0.479 Sum_probs=76.8
Q ss_pred ccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEE
Q 009987 54 TNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLL 133 (521)
Q Consensus 54 ~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~ 133 (521)
++|+..+.+. ++++|.||++||++|+.+.|.++++++. . +.+.++.+|++ .+.+++++|+|.++||++
T Consensus 1 ~~~~~~~~~~--~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~-------~~~~~~~i~~~--~~~~~~~~~~v~~~P~~~ 68 (93)
T cd02947 1 EEFEELIKSA--KPVVVDFWAPWCGPCKAIAPVLEELAEE-Y-------PKVKFVKVDVD--ENPELAEEYGVRSIPTFL 68 (93)
T ss_pred CchHHHHhcC--CcEEEEEECCCChhHHHhhHHHHHHHHH-C-------CCceEEEEECC--CChhHHHhcCcccccEEE
Confidence 3577777765 7789999999999999999999999988 2 35899999984 578999999999999999
Q ss_pred EecCCcccCCCCCCCccchhhhhccccCCHHHHHHHH
Q 009987 134 WGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (521)
Q Consensus 134 ~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i 170 (521)
+|.+|+. +..+.|..+.+.|.++|
T Consensus 69 ~~~~g~~-------------~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 69 FFKNGKE-------------VDRVVGADPKEELEEFL 92 (93)
T ss_pred EEECCEE-------------EEEEecCCCHHHHHHHh
Confidence 9987742 34567777888888876
No 63
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.2e-12 Score=135.87 Aligned_cols=106 Identities=27% Similarity=0.533 Sum_probs=87.1
Q ss_pred ecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcC
Q 009987 50 ELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHY 129 (521)
Q Consensus 50 ~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~y 129 (521)
.++..+|...+... +.+++|+||||||+||+++.|+|+++++.++ +.+.++.|||+ ++.++|++|+|++|
T Consensus 33 ~~~~~~~~~~~~~~-~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~-------~~~~~~~vd~~--~~~~~~~~y~i~gf 102 (383)
T KOG0191|consen 33 ELTLDSFFDFLLKD-DSPWLVEFYAPWCGHCKKLAPTYKKLAKALK-------GKVKIGAVDCD--EHKDLCEKYGIQGF 102 (383)
T ss_pred hhhccccHHHhhcc-CCceEEEEECCCCcchhhhchHHHHHHHHhc-------CceEEEEeCch--hhHHHHHhcCCccC
Confidence 34455555555443 3668999999999999999999999999997 46999999994 68999999999999
Q ss_pred ceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcccCc
Q 009987 130 PMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSY 178 (521)
Q Consensus 130 PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~~~~ 178 (521)
||+.+|.+| . .+..|.|.++++.+.+|+.+.+...+
T Consensus 103 Ptl~~f~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (383)
T KOG0191|consen 103 PTLKVFRPG-K------------KPIDYSGPRNAESLAEFLIKELEPSV 138 (383)
T ss_pred cEEEEEcCC-C------------ceeeccCcccHHHHHHHHHHhhcccc
Confidence 999999887 1 12457789999999999998876554
No 64
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.35 E-value=3.9e-12 Score=112.31 Aligned_cols=99 Identities=16% Similarity=0.087 Sum_probs=75.3
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccc---------cH
Q 009987 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI---------NT 118 (521)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~---------~~ 118 (521)
+..++.++|.+.+.+. +.++|.|+++|||+|+.+.|.+++++++.+ +.++.||.+.+. -.
T Consensus 8 ~~~it~~~~~~~i~~~--~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~---------~~~y~vdvd~~~~~~~~~~~~~~ 76 (122)
T TIGR01295 8 LEVTTVVRALEALDKK--ETATFFIGRKTCPYCRKFSGTLSGVVAQTK---------APIYYIDSENNGSFEMSSLNDLT 76 (122)
T ss_pred ceecCHHHHHHHHHcC--CcEEEEEECCCChhHHHHhHHHHHHHHhcC---------CcEEEEECCCccCcCcccHHHHH
Confidence 6678888999999774 568999999999999999999999999832 457777764221 13
Q ss_pred HHHHhCC----CCcCceEEEecCCcccCCCCCCCccchhhhhccc-cCCHHHHHHHH
Q 009987 119 NLCDKFS----VGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALED-WQTADGLLTWI 170 (521)
Q Consensus 119 ~l~~~f~----I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G-~~~~~~L~~~i 170 (521)
++.++|+ |.++||+++|++|+.. .+..| ..+.++|.+|+
T Consensus 77 ~~~~~~~i~~~i~~~PT~v~~k~Gk~v-------------~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 77 AFRSRFGIPTSFMGTPTFVHITDGKQV-------------SVRCGSSTTAQELQDIA 120 (122)
T ss_pred HHHHHcCCcccCCCCCEEEEEeCCeEE-------------EEEeCCCCCHHHHHHHh
Confidence 5566665 5569999999998544 34556 45688888876
No 65
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.34 E-value=4.9e-12 Score=111.88 Aligned_cols=102 Identities=20% Similarity=0.369 Sum_probs=76.2
Q ss_pred cHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHH---HHHHHhCCCCCCCCCeEEEEEeecccc-----------ccHHH
Q 009987 55 NFDAVLRDTPATYAVVEFFANWCPACRNYKPQYE---KVARLFNGPNAAHPGIILMTRVDCALK-----------INTNL 120 (521)
Q Consensus 55 ~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~---~lA~~~~~~~~~~~~~v~~~~VDc~~d-----------~~~~l 120 (521)
.++.+..+.+ ++++|.|||+||++|+.+.|.+. .+.+.++ +.+.++.||.+.+ .+.++
T Consensus 5 ~~~~a~~~~~-k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~d~~~~~~~~~~~~~~~~~l 76 (125)
T cd02951 5 DLAEAAADGK-KPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR-------AHFVVVYINIDGDKEVTDFDGEALSEKEL 76 (125)
T ss_pred HHHHHHHcCC-CcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH-------hheEEEEEEccCCceeeccCCCCccHHHH
Confidence 3444554431 78999999999999999999885 5666664 2477888987532 24789
Q ss_pred HHhCCCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcc
Q 009987 121 CDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (521)
Q Consensus 121 ~~~f~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~ 175 (521)
+.+|+|+++||+++|.++ +| +.+.++.|..+.+.+.++|+..+.
T Consensus 77 ~~~~~v~~~Pt~~~~~~~---gg--------~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 77 ARKYRVRFTPTVIFLDPE---GG--------KEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred HHHcCCccccEEEEEcCC---CC--------ceeEEecCCCCHHHHHHHHHHHHh
Confidence 999999999999998753 00 234567888899999999887654
No 66
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.33 E-value=3.9e-12 Score=111.29 Aligned_cols=80 Identities=16% Similarity=0.289 Sum_probs=67.9
Q ss_pred CcccHHHHHhcCCCCeEEEEEec-------CCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc-----cccHH
Q 009987 52 NATNFDAVLRDTPATYAVVEFFA-------NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-----KINTN 119 (521)
Q Consensus 52 ~~~~f~~~l~~~~~~~vlV~FyA-------~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-----d~~~~ 119 (521)
+.++|.+.+.+.++++++|.||| +|||+|+.+.|.+++++..+. +.+.|+.||++. +.+.+
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-------~~v~fv~Vdvd~~~~w~d~~~~ 80 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP-------EDCVFIYCDVGDRPYWRDPNNP 80 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC-------CCCEEEEEEcCCcccccCcchh
Confidence 45678888887666899999999 999999999999999999885 348899999853 23579
Q ss_pred HHHhCCCC-cCceEEEecCC
Q 009987 120 LCDKFSVG-HYPMLLWGSPS 138 (521)
Q Consensus 120 l~~~f~I~-~yPTl~~f~~g 138 (521)
+..+|+|+ ++||+++|..|
T Consensus 81 ~~~~~~I~~~iPT~~~~~~~ 100 (119)
T cd02952 81 FRTDPKLTTGVPTLLRWKTP 100 (119)
T ss_pred hHhccCcccCCCEEEEEcCC
Confidence 99999999 99999999655
No 67
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.31 E-value=9.2e-12 Score=118.42 Aligned_cols=108 Identities=14% Similarity=0.221 Sum_probs=82.3
Q ss_pred cCcceecCcccHHHHHhcC-CCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHh
Q 009987 45 VDHAVELNATNFDAVLRDT-PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDK 123 (521)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~-~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~ 123 (521)
-..+.+++..+|...+.+. ++.+|+|.||++||++|+.+.|.+++||..+. .++|++||.+ .....
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--------~vkFvkI~ad-----~~~~~ 147 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP--------DTKFVKIIST-----QCIPN 147 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC--------CCEEEEEEhH-----HhHhh
Confidence 4568899999999876554 34689999999999999999999999999984 3899999973 13689
Q ss_pred CCCCcCceEEEecCCcccCCCCCCCccchhhhhccc-cCCHHHHHHHHHH
Q 009987 124 FSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALED-WQTADGLLTWINK 172 (521)
Q Consensus 124 f~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G-~~~~~~L~~~i~~ 172 (521)
|+|.++||+++|++|+..... .....+.| ..+.++|..++.+
T Consensus 148 ~~i~~lPTlliyk~G~~v~~i-------vG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 148 YPDKNLPTILVYRNGDIVKQF-------IGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CCCCCCCEEEEEECCEEEEEE-------eCchhhCCCCCCHHHHHHHHHh
Confidence 999999999999998755320 01112222 4677777777654
No 68
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.30 E-value=3.4e-11 Score=112.20 Aligned_cols=105 Identities=16% Similarity=0.371 Sum_probs=79.3
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc------------
Q 009987 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL------------ 114 (521)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~------------ 114 (521)
.+..++++.+. +.+..+++++|+||++||++|+...|.+.++++++.+ ..+.++.|+++.
T Consensus 45 ~~~~~~g~~~~--l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~------~~~~vi~i~~d~~~~~~~~~~~~~ 116 (173)
T PRK03147 45 VLTDLEGKKIE--LKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE------KGVEIIAVNVDETELAVKNFVNRY 116 (173)
T ss_pred EeecCCCCEEe--HHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc------CCeEEEEEEcCCCHHHHHHHHHHh
Confidence 45556666554 2223457899999999999999999999999999874 237788888752
Q ss_pred --------cccHHHHHhCCCCcCceEEEec-CCcccCCCCCCCccchhhhhccccCCHHHHHHHHHH
Q 009987 115 --------KINTNLCDKFSVGHYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (521)
Q Consensus 115 --------d~~~~l~~~f~I~~yPTl~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~ 172 (521)
+.+..+++.|+|.++|+++++. +|++ +..+.|..+.+++.+++++
T Consensus 117 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i-------------~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 117 GLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKV-------------VKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred CCCceEEECCcchHHHHcCCCCcCeEEEECCCCcE-------------EEEEeCCCCHHHHHHHHHH
Confidence 2356789999999999988775 4432 3456788899999988864
No 69
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1e-11 Score=130.88 Aligned_cols=111 Identities=26% Similarity=0.596 Sum_probs=95.8
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCC
Q 009987 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (521)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I 126 (521)
.+..++..+|+..+.+.. ..++|.||||||+||+.++|+|++++..++.. +.+.++.+||+ .+..+|++++|
T Consensus 145 ~v~~l~~~~~~~~~~~~~-~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~-----~~v~~~~~d~~--~~~~~~~~~~v 216 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSD-ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSK-----ENVELGKIDAT--VHKSLASRLEV 216 (383)
T ss_pred ceEEccccchhhhhhccC-cceEEEEeccccHHhhhcChHHHHHHHHhccC-----cceEEEeeccc--hHHHHhhhhcc
Confidence 389999999999888765 55799999999999999999999999998641 46999999996 57899999999
Q ss_pred CcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcccC
Q 009987 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRS 177 (521)
Q Consensus 127 ~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~~~ 177 (521)
++|||+++|++|.. ....+.|.|+.+.|+.|+++..+..
T Consensus 217 ~~~Pt~~~f~~~~~------------~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 217 RGYPTLKLFPPGEE------------DIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred cCCceEEEecCCCc------------ccccccccccHHHHHHHHHhhcCCC
Confidence 99999999988732 1356788999999999999987764
No 70
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.28 E-value=3.8e-11 Score=113.80 Aligned_cols=89 Identities=12% Similarity=0.088 Sum_probs=64.6
Q ss_pred CCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc---------------------cccHHHHH
Q 009987 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL---------------------KINTNLCD 122 (521)
Q Consensus 64 ~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~---------------------d~~~~l~~ 122 (521)
++++++|+|||+||++|++++|.++++++. .+.++.|+.++ |.+..+.+
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~----------~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 136 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----------GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGL 136 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc----------CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHH
Confidence 358899999999999999999999998652 14556665421 12234667
Q ss_pred hCCCCcCceEEEe-cCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcc
Q 009987 123 KFSVGHYPMLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (521)
Q Consensus 123 ~f~I~~yPTl~~f-~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~ 175 (521)
.|+|.++|+.+++ ++|++. ..+.|..+.+++.++|...+.
T Consensus 137 ~~gv~~~P~t~vid~~G~i~-------------~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 137 DLGVYGAPETFLIDGNGIIR-------------YRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred hcCCCcCCeEEEECCCceEE-------------EEEecCCCHHHHHHHHHHHHH
Confidence 8999999966655 566443 456788888888888876653
No 71
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.26 E-value=3.2e-11 Score=98.08 Aligned_cols=80 Identities=18% Similarity=0.254 Sum_probs=67.4
Q ss_pred EEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEEecCCcccCCCCCC
Q 009987 68 AVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEP 147 (521)
Q Consensus 68 vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~f~~g~~~~~~~~~ 147 (521)
.+..||++||++|+.+.|.+++++++++ +.+.+..||+ +++.+++++|+|+++||+++ +|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-------~~~~~~~vd~--~~~~~~~~~~~v~~vPt~~~--~g~-------- 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMG-------DAVEVEYINV--MENPQKAMEYGIMAVPAIVI--NGD-------- 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhc-------CceEEEEEeC--ccCHHHHHHcCCccCCEEEE--CCE--------
Confidence 4678999999999999999999999885 3488999998 46789999999999999986 442
Q ss_pred CccchhhhhccccCCHHHHHHHHHHh
Q 009987 148 NQEKKEIRALEDWQTADGLLTWINKQ 173 (521)
Q Consensus 148 ~~~~~~v~~~~G~~~~~~L~~~i~~~ 173 (521)
..+.|..+.++|.++|.+.
T Consensus 63 -------~~~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 63 -------VEFIGAPTKEELVEAIKKR 81 (82)
T ss_pred -------EEEecCCCHHHHHHHHHhh
Confidence 2467888899999988764
No 72
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.26 E-value=3.9e-11 Score=129.17 Aligned_cols=90 Identities=18% Similarity=0.256 Sum_probs=69.7
Q ss_pred CCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeec--------------------------ccccc
Q 009987 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC--------------------------ALKIN 117 (521)
Q Consensus 64 ~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc--------------------------~~d~~ 117 (521)
+++++||+|||+||++|++++|.+++++++++.. .+.|+.|.. ..|.+
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~------~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~ 128 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS------SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNG 128 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC------CeEEEEEecccccccccHHHHHHHHHhCCCcccceecccc
Confidence 5689999999999999999999999999988632 244444421 11356
Q ss_pred HHHHHhCCCCcCceEEEe-cCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHH
Q 009987 118 TNLCDKFSVGHYPMLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (521)
Q Consensus 118 ~~l~~~f~I~~yPTl~~f-~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~ 172 (521)
..+.+.|+|+++||++++ ++|++ +..+.|..+.++|.++|+.
T Consensus 129 ~~lak~fgV~giPTt~IIDkdGkI-------------V~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 129 GTLAQSLNISVYPSWAIIGKDGDV-------------QRIVKGSISEAQALALIRN 171 (521)
T ss_pred HHHHHHcCCCCcCeEEEEcCCCeE-------------EEEEeCCCCHHHHHHHHHH
Confidence 789999999999998665 56643 3457788999999998873
No 73
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.24 E-value=4.6e-11 Score=101.51 Aligned_cols=89 Identities=20% Similarity=0.279 Sum_probs=72.9
Q ss_pred CCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCC--cCceEEEecCCcccC
Q 009987 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG--HYPMLLWGSPSKFVA 142 (521)
Q Consensus 65 ~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~--~yPTl~~f~~g~~~~ 142 (521)
+++++|.|+++||++|+.+.|.++++|++++ +.+.|+.||+ +++.++++.|||. ++||+.+++.++
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~-------~~v~f~~vd~--~~~~~~~~~~~i~~~~~P~~~~~~~~~--- 79 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFK-------GKLLFVVVDA--DDFGRHLEYFGLKEEDLPVIAIINLSD--- 79 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhC-------CeEEEEEEch--HhhHHHHHHcCCChhhCCEEEEEeccc---
Confidence 4779999999999999999999999999997 4699999998 4578999999999 999999998721
Q ss_pred CCCCCCccchhhhhccccCCHHHHHHHHHHh
Q 009987 143 GSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (521)
Q Consensus 143 ~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~ 173 (521)
+ .......|..+.++|.+||.+.
T Consensus 80 ~--------~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 80 G--------KKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred c--------cccCCCccccCHHHHHHHHHhh
Confidence 0 1112223445899999999764
No 74
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.17 E-value=2.5e-10 Score=104.68 Aligned_cols=87 Identities=15% Similarity=0.266 Sum_probs=60.8
Q ss_pred CeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccc----------cHHHH-HhC---CCCcCce
Q 009987 66 TYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI----------NTNLC-DKF---SVGHYPM 131 (521)
Q Consensus 66 ~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~----------~~~l~-~~f---~I~~yPT 131 (521)
++.+|+|||+||++|++++|.+++++++++ +.+..|+.+.+. ..... ..| +|.++||
T Consensus 51 ~~~lvnFWAsWCppCr~e~P~L~~l~~~~~---------~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPT 121 (153)
T TIGR02738 51 DYALVFFYQSTCPYCHQFAPVLKRFSQQFG---------LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPA 121 (153)
T ss_pred CCEEEEEECCCChhHHHHHHHHHHHHHHcC---------CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCe
Confidence 456999999999999999999999999873 334444443211 12333 345 8999999
Q ss_pred EEEecC-CcccCCCCCCCccchhhhhccccCCHHHHHHHHHHh
Q 009987 132 LLWGSP-SKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (521)
Q Consensus 132 l~~f~~-g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~ 173 (521)
++++.+ |.. ....+.|..+.+++.+.|.+.
T Consensus 122 t~LID~~G~~------------i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 122 TFLVNVNTRK------------AYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred EEEEeCCCCE------------EEEEeecccCHHHHHHHHHHh
Confidence 998853 321 112457888999888887654
No 75
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.16 E-value=1.2e-10 Score=113.12 Aligned_cols=90 Identities=12% Similarity=0.113 Sum_probs=71.2
Q ss_pred CeEEEEEec---CCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEEecCCcccC
Q 009987 66 TYAVVEFFA---NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVA 142 (521)
Q Consensus 66 ~~vlV~FyA---~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~f~~g~~~~ 142 (521)
...++.|++ +|||+|+.+.|.++++++.+.+ -.+.++.+| .+++++++++|+|.++||+++|.+|+..
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~------~~i~~v~vd--~~~~~~l~~~~~V~~~Pt~~~f~~g~~~- 90 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK------LKLEIYDFD--TPEDKEEAEKYGVERVPTTIILEEGKDG- 90 (215)
T ss_pred CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC------ceEEEEecC--CcccHHHHHHcCCCccCEEEEEeCCeee-
Confidence 445778999 9999999999999999998731 124455555 4678999999999999999999887421
Q ss_pred CCCCCCccchhhhhccccCCHHHHHHHHHHhcc
Q 009987 143 GSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (521)
Q Consensus 143 ~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~ 175 (521)
..++.|..+.+++.+||+..++
T Consensus 91 -----------~~~~~G~~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 91 -----------GIRYTGIPAGYEFAALIEDIVR 112 (215)
T ss_pred -----------EEEEeecCCHHHHHHHHHHHHH
Confidence 1357788888999999988754
No 76
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.16 E-value=6e-11 Score=103.98 Aligned_cols=70 Identities=16% Similarity=0.280 Sum_probs=50.9
Q ss_pred CCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCc--CceEEEec-CCcc
Q 009987 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGH--YPMLLWGS-PSKF 140 (521)
Q Consensus 64 ~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~--yPTl~~f~-~g~~ 140 (521)
.++++||.|||+||++|+.+.|.+.+.+..... ...|+.||.+.+. ......|++.+ +||+++|. +|+.
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-------~~~fv~v~vd~~~-~~~~~~~~~~g~~vPt~~f~~~~Gk~ 89 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEISEL-------SHNFVMVNLEDDE-EPKDEEFSPDGGYIPRILFLDPSGDV 89 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-------cCcEEEEEecCCC-CchhhhcccCCCccceEEEECCCCCC
Confidence 358999999999999999999999998775431 1234445543222 24557899987 99999995 6655
Q ss_pred c
Q 009987 141 V 141 (521)
Q Consensus 141 ~ 141 (521)
.
T Consensus 90 ~ 90 (117)
T cd02959 90 H 90 (117)
T ss_pred c
Confidence 4
No 77
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.10 E-value=3.2e-10 Score=100.98 Aligned_cols=75 Identities=17% Similarity=0.348 Sum_probs=57.1
Q ss_pred CCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecccc----------------------ccHHH
Q 009987 63 TPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK----------------------INTNL 120 (521)
Q Consensus 63 ~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d----------------------~~~~l 120 (521)
.+++++||+||++||++|+.+.|.+.++++++.+.+ ..+.++.|+.+.+ .+..+
T Consensus 16 ~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~----~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T cd03009 16 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESG----KNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRL 91 (131)
T ss_pred hCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcC----CCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHH
Confidence 346889999999999999999999999999886431 2355665655322 12568
Q ss_pred HHhCCCCcCceEEEec-CCccc
Q 009987 121 CDKFSVGHYPMLLWGS-PSKFV 141 (521)
Q Consensus 121 ~~~f~I~~yPTl~~f~-~g~~~ 141 (521)
++.|+|.++||++++. +|++.
T Consensus 92 ~~~~~v~~~P~~~lid~~G~i~ 113 (131)
T cd03009 92 NRTFKIEGIPTLIILDADGEVV 113 (131)
T ss_pred HHHcCCCCCCEEEEECCCCCEE
Confidence 8899999999999985 66543
No 78
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.09 E-value=3.4e-10 Score=124.84 Aligned_cols=103 Identities=14% Similarity=0.353 Sum_probs=80.1
Q ss_pred CcccHHHHHhc--CCCCeEEEEEecCCChhHhhhhHHH---HHHHHHhCCCCCCCCCeEEEEEeecccc--ccHHHHHhC
Q 009987 52 NATNFDAVLRD--TPATYAVVEFFANWCPACRNYKPQY---EKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKF 124 (521)
Q Consensus 52 ~~~~f~~~l~~--~~~~~vlV~FyA~WCg~C~~~~P~~---~~lA~~~~~~~~~~~~~v~~~~VDc~~d--~~~~l~~~f 124 (521)
+.+++++.+.+ .++++++|+|||+||++|+.+.|.. .++.+.++ .+.++++|++++ ++.+++++|
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--------~~~~v~vDvt~~~~~~~~l~~~~ 530 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--------DTVLLQADVTANNAEDVALLKHY 530 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--------CCEEEEEECCCCChhhHHHHHHc
Confidence 45778887754 2358999999999999999999875 66777764 277889998642 457899999
Q ss_pred CCCcCceEEEec-CCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHh
Q 009987 125 SVGHYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (521)
Q Consensus 125 ~I~~yPTl~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~ 173 (521)
+|.++||+++|+ +|+.. ...++.|..+.+++.+++++.
T Consensus 531 ~v~g~Pt~~~~~~~G~~i-----------~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 531 NVLGLPTILFFDAQGQEI-----------PDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCCCCCEEEEECCCCCCc-----------ccccccCCCCHHHHHHHHHHh
Confidence 999999999996 45321 124567889999999999864
No 79
>PTZ00062 glutaredoxin; Provisional
Probab=99.08 E-value=4.2e-10 Score=107.64 Aligned_cols=91 Identities=12% Similarity=0.136 Sum_probs=71.3
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCce
Q 009987 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPM 131 (521)
Q Consensus 52 ~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPT 131 (521)
+.++|++.+.+.. +.+++.|+|+||++|+.+.|.+.++++++. .+.|+.||. + |+|.++||
T Consensus 5 ~~ee~~~~i~~~~-g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~--------~~~F~~V~~--d--------~~V~~vPt 65 (204)
T PTZ00062 5 KKEEKDKLIESNT-GKLVLYVKSSKEPEYEQLMDVCNALVEDFP--------SLEFYVVNL--A--------DANNEYGV 65 (204)
T ss_pred CHHHHHHHHhcCC-CcEEEEEeCCCCcchHHHHHHHHHHHHHCC--------CcEEEEEcc--c--------cCcccceE
Confidence 4567777777533 457999999999999999999999999983 499999995 2 99999999
Q ss_pred EEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcc
Q 009987 132 LLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (521)
Q Consensus 132 l~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~ 175 (521)
+++|.+|+.. .++.| .++..|.+++.++.+
T Consensus 66 fv~~~~g~~i-------------~r~~G-~~~~~~~~~~~~~~~ 95 (204)
T PTZ00062 66 FEFYQNSQLI-------------NSLEG-CNTSTLVSFIRGWAQ 95 (204)
T ss_pred EEEEECCEEE-------------eeeeC-CCHHHHHHHHHHHcC
Confidence 9999988543 44554 456667776666554
No 80
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.08 E-value=9e-10 Score=103.01 Aligned_cols=87 Identities=15% Similarity=0.236 Sum_probs=64.5
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecccc-----------ccHHHHHhCCC--CcCceEEEe
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK-----------INTNLCDKFSV--GHYPMLLWG 135 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d-----------~~~~l~~~f~I--~~yPTl~~f 135 (521)
+|.||++||++|++++|.++++++++. +.++.|+.+.+ ....+...|++ .++||.+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g---------~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLI 143 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG---------FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLV 143 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC---------CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEE
Confidence 788999999999999999999999973 45555554321 22446778995 699998887
Q ss_pred -cCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhccc
Q 009987 136 -SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (521)
Q Consensus 136 -~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~~ 176 (521)
++|++. ...+.|..+.++|.+.|.+.+..
T Consensus 144 d~~G~i~------------~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 144 NVNTLEA------------LPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred eCCCcEE------------EEEEECCCCHHHHHHHHHHHHhh
Confidence 444321 13467999999998888887653
No 81
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.07 E-value=8.6e-10 Score=103.34 Aligned_cols=88 Identities=16% Similarity=0.213 Sum_probs=65.4
Q ss_pred CCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecc---------------------ccccHHHHHh
Q 009987 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA---------------------LKINTNLCDK 123 (521)
Q Consensus 65 ~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~---------------------~d~~~~l~~~ 123 (521)
+++++|.||++||++|+++.|.++++++. .+.++.|+.+ .|.+..+.+.
T Consensus 63 gk~vll~F~a~wC~~C~~~~p~l~~l~~~----------~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~ 132 (173)
T TIGR00385 63 GKPVLLNVWASWCPPCRAEHPYLNELAKD----------GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLD 132 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHc----------CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHh
Confidence 58899999999999999999999988753 1344444421 1234567788
Q ss_pred CCCCcCceEEEe-cCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcc
Q 009987 124 FSVGHYPMLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (521)
Q Consensus 124 f~I~~yPTl~~f-~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~ 175 (521)
|+|.++|+.+++ ++|++. ..+.|..+.+++.+++++.+.
T Consensus 133 ~~v~~~P~~~~id~~G~i~-------------~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 133 LGVYGAPETFLVDGNGVIL-------------YRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred cCCeeCCeEEEEcCCceEE-------------EEEeccCCHHHHHHHHHHHhh
Confidence 999999965555 566433 456788999999999988764
No 82
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.05 E-value=6.5e-10 Score=100.88 Aligned_cols=80 Identities=14% Similarity=0.165 Sum_probs=57.8
Q ss_pred cCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCC-CCCCeEEEEEeeccccc-----------------------c
Q 009987 62 DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNA-AHPGIILMTRVDCALKI-----------------------N 117 (521)
Q Consensus 62 ~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~-~~~~~v~~~~VDc~~d~-----------------------~ 117 (521)
+.++++++|+|||+||++|++++|.++++++++++... .....+.++.|+.+.+. .
T Consensus 22 ~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~ 101 (146)
T cd03008 22 RLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFR 101 (146)
T ss_pred HhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHH
Confidence 44568999999999999999999999999988764210 00124777777754211 1
Q ss_pred HHHHHhCCCCcCceEEEec-CCccc
Q 009987 118 TNLCDKFSVGHYPMLLWGS-PSKFV 141 (521)
Q Consensus 118 ~~l~~~f~I~~yPTl~~f~-~g~~~ 141 (521)
..+.+.|+|.++||++++. +|++.
T Consensus 102 ~~l~~~y~v~~iPt~vlId~~G~Vv 126 (146)
T cd03008 102 RELEAQFSVEELPTVVVLKPDGDVL 126 (146)
T ss_pred HHHHHHcCCCCCCEEEEECCCCcEE
Confidence 3578899999999998874 55443
No 83
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.04 E-value=6.5e-10 Score=98.34 Aligned_cols=81 Identities=14% Similarity=0.177 Sum_probs=58.5
Q ss_pred CCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecc---------------------ccccHHHHH
Q 009987 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA---------------------LKINTNLCD 122 (521)
Q Consensus 64 ~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~---------------------~d~~~~l~~ 122 (521)
++++++|.|||+||++|+++.|.++++++.+. +.++.|+.+ .|.+..+++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~---------~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 94 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR---------VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGI 94 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC---------cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHH
Confidence 45889999999999999999999999987752 445555421 134567899
Q ss_pred hCCCCcCceEEEe-cCCcccCCCCCCCccchhhhhccccCCHHHH
Q 009987 123 KFSVGHYPMLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGL 166 (521)
Q Consensus 123 ~f~I~~yPTl~~f-~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L 166 (521)
.|+|.++|+.+++ ++|++. ..+.|..+.+.|
T Consensus 95 ~~~v~~~P~~~~ld~~G~v~-------------~~~~G~~~~~~~ 126 (127)
T cd03010 95 DLGVYGVPETFLIDGDGIIR-------------YKHVGPLTPEVW 126 (127)
T ss_pred hcCCCCCCeEEEECCCceEE-------------EEEeccCChHhc
Confidence 9999999955554 566433 345666665543
No 84
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.03 E-value=3.9e-10 Score=97.37 Aligned_cols=90 Identities=17% Similarity=0.298 Sum_probs=60.9
Q ss_pred CCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccc------------------cHHHHHhCC
Q 009987 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI------------------NTNLCDKFS 125 (521)
Q Consensus 64 ~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~------------------~~~l~~~f~ 125 (521)
.+++++|.|+++||++|+.+.+.+.+..+-...-. ..+.++.+++..+. +.++.+.||
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLK----DDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYG 79 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEH----CECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhh----cCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcC
Confidence 46889999999999999999999986544221100 24677777764322 356899999
Q ss_pred CCcCceEEEec-CCcccCCCCCCCccchhhhhccccCCHHHHHHHH
Q 009987 126 VGHYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (521)
Q Consensus 126 I~~yPTl~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i 170 (521)
|+++||++++. +|+ .+..+.|..+.++|.+++
T Consensus 80 v~gtPt~~~~d~~G~-------------~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 80 VNGTPTIVFLDKDGK-------------IVYRIPGYLSPEELLKML 112 (112)
T ss_dssp --SSSEEEECTTTSC-------------EEEEEESS--HHHHHHHH
T ss_pred CCccCEEEEEcCCCC-------------EEEEecCCCCHHHHHhhC
Confidence 99999999985 443 345678999999998865
No 85
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.03 E-value=1.2e-09 Score=109.57 Aligned_cols=97 Identities=16% Similarity=0.253 Sum_probs=72.3
Q ss_pred HHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecccc---------ccHHHHHhCCCCc
Q 009987 58 AVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK---------INTNLCDKFSVGH 128 (521)
Q Consensus 58 ~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d---------~~~~l~~~f~I~~ 128 (521)
..+.+..++++||.|||+||++|+.++|.++++++++. +.+..|+.+.+ .+..+.++|||.+
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg---------~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~ 229 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG---------IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRT 229 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC---------cEEEEEeCCCCccccCCcccCCHHHHHHcCCCc
Confidence 44555556889999999999999999999999999974 44555554321 2467899999999
Q ss_pred CceEEEecC-CcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcc
Q 009987 129 YPMLLWGSP-SKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (521)
Q Consensus 129 yPTl~~f~~-g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~ 175 (521)
+||++++.+ |+.. .....|..+.++|.+.|.....
T Consensus 230 vPtl~Lv~~~~~~v------------~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 230 VPAVFLADPDPNQF------------TPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CCeEEEEECCCCEE------------EEEEeCCCCHHHHHHHHHHHhc
Confidence 999999875 3211 1224578899999988876543
No 86
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.02 E-value=1.1e-09 Score=97.88 Aligned_cols=77 Identities=19% Similarity=0.298 Sum_probs=57.5
Q ss_pred hcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccc-----------------------c
Q 009987 61 RDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI-----------------------N 117 (521)
Q Consensus 61 ~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~-----------------------~ 117 (521)
.+.+++++||.|||+||++|+.++|.++++++.+++.. ..+.++.|+.+.+. .
T Consensus 13 ~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~----~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 88 (132)
T cd02964 13 SALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEG----KNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELR 88 (132)
T ss_pred HHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcC----CCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHH
Confidence 33356899999999999999999999999999886431 23666666654221 2
Q ss_pred HHHHHhCCCCcCceEEEec-CCccc
Q 009987 118 TNLCDKFSVGHYPMLLWGS-PSKFV 141 (521)
Q Consensus 118 ~~l~~~f~I~~yPTl~~f~-~g~~~ 141 (521)
..+.+.|+|.++||++++. +|++.
T Consensus 89 ~~~~~~~~v~~iPt~~lid~~G~iv 113 (132)
T cd02964 89 ELLEKQFKVEGIPTLVVLKPDGDVV 113 (132)
T ss_pred HHHHHHcCCCCCCEEEEECCCCCEE
Confidence 3567789999999999885 55443
No 87
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.00 E-value=1.8e-09 Score=104.87 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=67.8
Q ss_pred CCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEEecCCcccCC
Q 009987 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAG 143 (521)
Q Consensus 64 ~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~f~~g~~~~~ 143 (521)
.+...++.||++||++|+.+.|.+++++... +.+.+..+|. +++++++++|+|+++||++++..|+
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~--------~~i~~~~vD~--~~~~~~~~~~~V~~vPtl~i~~~~~---- 197 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAN--------DKILGEMIEA--NENPDLAEKYGVMSVPKIVINKGVE---- 197 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhc--------CceEEEEEeC--CCCHHHHHHhCCccCCEEEEecCCE----
Confidence 3344566699999999999999999998874 3588889997 5689999999999999999976541
Q ss_pred CCCCCccchhhhhccccCCHHHHHHHHHH
Q 009987 144 SWEPNQEKKEIRALEDWQTADGLLTWINK 172 (521)
Q Consensus 144 ~~~~~~~~~~v~~~~G~~~~~~L~~~i~~ 172 (521)
.+.|..+.++|.++|.+
T Consensus 198 ------------~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 198 ------------EFVGAYPEEQFLEYILS 214 (215)
T ss_pred ------------EEECCCCHHHHHHHHHh
Confidence 16678888899988864
No 88
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.99 E-value=2.1e-09 Score=89.94 Aligned_cols=67 Identities=19% Similarity=0.464 Sum_probs=53.2
Q ss_pred CCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecccc-----------------------ccHHHH
Q 009987 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK-----------------------INTNLC 121 (521)
Q Consensus 65 ~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d-----------------------~~~~l~ 121 (521)
+++++|.|||+||++|+++.|.+.++.+.+++ + +.+.++.|.++.+ ....+.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~----~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 75 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-K----DDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELL 75 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-T----TTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-C----CCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHH
Confidence 47899999999999999999999999999984 2 4588888887532 234678
Q ss_pred HhCCCCcCceEEEec
Q 009987 122 DKFSVGHYPMLLWGS 136 (521)
Q Consensus 122 ~~f~I~~yPTl~~f~ 136 (521)
+.|+|.++|+++++.
T Consensus 76 ~~~~i~~iP~~~lld 90 (95)
T PF13905_consen 76 KKYGINGIPTLVLLD 90 (95)
T ss_dssp HHTT-TSSSEEEEEE
T ss_pred HHCCCCcCCEEEEEC
Confidence 899999999998874
No 89
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.98 E-value=1.8e-09 Score=87.18 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=47.3
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEEecCC
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPS 138 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~f~~g 138 (521)
-|+||++|||+|+.+.|.++++++++. ..+.+..|| +.+.+.+|+|.+.||+++ +|
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~-------~~~~~~~v~-----~~~~a~~~~v~~vPti~i--~G 57 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELG-------IDAEFEKVT-----DMNEILEAGVTATPGVAV--DG 57 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcC-------CCeEEEEeC-----CHHHHHHcCCCcCCEEEE--CC
Confidence 389999999999999999999999985 347787777 234578899999999998 55
No 90
>PHA02125 thioredoxin-like protein
Probab=98.97 E-value=1.6e-09 Score=87.22 Aligned_cols=50 Identities=28% Similarity=0.533 Sum_probs=43.1
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEE
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLL 133 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~ 133 (521)
+|.|||+||++|+.+.|.+++++ +.++.||+ +++.+++++|+|+++||++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------------~~~~~vd~--~~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------------YTYVDVDT--DEGVELTAKHHIRSLPTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------------heEEeeeC--CCCHHHHHHcCCceeCeEE
Confidence 78999999999999999987642 34677886 5688999999999999997
No 91
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.88 E-value=7.5e-09 Score=90.77 Aligned_cols=97 Identities=20% Similarity=0.371 Sum_probs=67.2
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEee-c--------------
Q 009987 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVD-C-------------- 112 (521)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VD-c-------------- 112 (521)
+..++++.+...... +++++|.||++||++|+.+.|.+.++++.+. .+.+. +| .
T Consensus 5 l~~~~g~~~~~~~~~--~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--------~i~i~-~~~~~~~~~~~~~~~~~~ 73 (123)
T cd03011 5 ATTLDGEQFDLESLS--GKPVLVYFWATWCPVCRFTSPTVNQLAADYP--------VVSVA-LRSGDDGAVARFMQKKGY 73 (123)
T ss_pred eecCCCCEeeHHHhC--CCEEEEEEECCcChhhhhhChHHHHHHhhCC--------EEEEE-ccCCCHHHHHHHHHHcCC
Confidence 334555555544433 4789999999999999999999999988742 22222 22 1
Q ss_pred ----cccccHHHHHhCCCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHH
Q 009987 113 ----ALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLT 168 (521)
Q Consensus 113 ----~~d~~~~l~~~f~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~ 168 (521)
..+.+.++++.|+|.++||++++.++.+ ...+.|..+.++|.+
T Consensus 74 ~~~~~~d~~~~~~~~~~i~~~P~~~vid~~gi-------------~~~~~g~~~~~~~~~ 120 (123)
T cd03011 74 GFPVINDPDGVISARWGVSVTPAIVIVDPGGI-------------VFVTTGVTSEWGLRL 120 (123)
T ss_pred CccEEECCCcHHHHhCCCCcccEEEEEcCCCe-------------EEEEeccCCHHHHHh
Confidence 0134578999999999999999876532 234567777777754
No 92
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.87 E-value=5.8e-09 Score=81.59 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=49.8
Q ss_pred EEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEE
Q 009987 68 AVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 68 vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~ 134 (521)
-++.|+++|||+|+.+.|.++++++.. +.+.+..+|. ++++++.++|+|.++||+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~--------~~i~~~~id~--~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN--------PNISAEMIDA--AEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC--------CceEEEEEEc--ccCHhHHHHcCCcccCEEEE
Confidence 378899999999999999999998764 3488999997 45788999999999999976
No 93
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.83 E-value=1.4e-08 Score=89.76 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=56.7
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHH-H--HHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHH------
Q 009987 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQ-Y--EKVARLFNGPNAAHPGIILMTRVDCALKINTNLCD------ 122 (521)
Q Consensus 52 ~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~-~--~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~------ 122 (521)
+++.++.+..+ ++++||.|+|+||+.|+.+.+. | .++++.++ ..+.++.||.+ +++++.+
T Consensus 4 ~~eal~~Ak~~--~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~-------~~fv~VkvD~~--~~~~~~~~~~~~~ 72 (124)
T cd02955 4 GEEAFEKARRE--DKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN-------ENFVPIKVDRE--ERPDVDKIYMNAA 72 (124)
T ss_pred CHHHHHHHHHc--CCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh-------CCEEEEEEeCC--cCcHHHHHHHHHH
Confidence 34455555554 4889999999999999999874 3 35666664 24788889974 4555554
Q ss_pred --hCCCCcCceEEEec-CCccc
Q 009987 123 --KFSVGHYPMLLWGS-PSKFV 141 (521)
Q Consensus 123 --~f~I~~yPTl~~f~-~g~~~ 141 (521)
.|++.|+||++++. +|+..
T Consensus 73 ~~~~~~~G~Pt~vfl~~~G~~~ 94 (124)
T cd02955 73 QAMTGQGGWPLNVFLTPDLKPF 94 (124)
T ss_pred HHhcCCCCCCEEEEECCCCCEE
Confidence 36999999999984 45443
No 94
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.81 E-value=2.8e-08 Score=93.53 Aligned_cols=89 Identities=10% Similarity=0.013 Sum_probs=57.7
Q ss_pred cCCCCeEEEEEecCCChhHhhhhHHHHHHHHH-hCCCCCCCCCeEEEEEeeccc--------------------------
Q 009987 62 DTPATYAVVEFFANWCPACRNYKPQYEKVARL-FNGPNAAHPGIILMTRVDCAL-------------------------- 114 (521)
Q Consensus 62 ~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~-~~~~~~~~~~~v~~~~VDc~~-------------------------- 114 (521)
+.++++++|+|||+||++|+..+|.++++++. +.-.. --....||.++
T Consensus 56 ~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~-----y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vl 130 (184)
T TIGR01626 56 ELAGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVK-----YQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVV 130 (184)
T ss_pred HcCCCEEEEEEEecCCChhhccchHHHHHHHcCCCccc-----ccceEEEECccchhhHHHHHHHHHHHhcccCCcceEE
Confidence 34479999999999999999999999999653 21000 00013333321
Q ss_pred -cccHHHHHhCCCCcCceE-EEe-cCCcccCCCCCCCccchhhhhccccCCHHHHHH
Q 009987 115 -KINTNLCDKFSVGHYPML-LWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLT 168 (521)
Q Consensus 115 -d~~~~l~~~f~I~~yPTl-~~f-~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~ 168 (521)
|.+..+...|+|.++|+. +++ ++|++ ...+.|..+.+++.+
T Consensus 131 lD~~g~v~~~~gv~~~P~T~fVIDk~GkV-------------v~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 131 LDDKGAVKNAWQLNSEDSAIIVLDKTGKV-------------KFVKEGALSDSDIQT 174 (184)
T ss_pred ECCcchHHHhcCCCCCCceEEEECCCCcE-------------EEEEeCCCCHHHHHH
Confidence 223456778999999855 444 45533 345678888777765
No 95
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.79 E-value=1.7e-08 Score=118.64 Aligned_cols=93 Identities=14% Similarity=0.251 Sum_probs=72.8
Q ss_pred CCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecc---c----------------------cccH
Q 009987 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA---L----------------------KINT 118 (521)
Q Consensus 64 ~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~---~----------------------d~~~ 118 (521)
+++++||+|||+||++|+.+.|.++++++++++. .+.++.|.+. . |.+.
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~------~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~ 492 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ------PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDM 492 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC------CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCch
Confidence 4689999999999999999999999999998742 3666666321 1 2345
Q ss_pred HHHHhCCCCcCceEEEe-cCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcc
Q 009987 119 NLCDKFSVGHYPMLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (521)
Q Consensus 119 ~l~~~f~I~~yPTl~~f-~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~ 175 (521)
.+.++|+|.++||++++ ++|++. .++.|....+.|.++|.+.+.
T Consensus 493 ~~~~~~~V~~iPt~ilid~~G~iv-------------~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 493 YLWRELGVSSWPTFAVVSPNGKLI-------------AQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred HHHHhcCCCccceEEEECCCCeEE-------------EEEecccCHHHHHHHHHHHHH
Confidence 67889999999999998 566443 456788888999998887653
No 96
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.77 E-value=1.6e-08 Score=87.35 Aligned_cols=62 Identities=18% Similarity=0.349 Sum_probs=46.1
Q ss_pred CCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEe-eccccccHHHHHhCCCCcCceEE
Q 009987 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRV-DCALKINTNLCDKFSVGHYPMLL 133 (521)
Q Consensus 65 ~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~V-Dc~~d~~~~l~~~f~I~~yPTl~ 133 (521)
+++++|.||++||++|+.+.|.++++++.+.+ .+.++.+ |.+.++..++++++++.++|++.
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-------~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-------WLDVVLASDGEKAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-------CcEEEEEeCCCHHHHHHHHHHhCCCCCcEEe
Confidence 58899999999999999999999999888742 2444433 33334556677778887777753
No 97
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.76 E-value=2.8e-08 Score=87.96 Aligned_cols=71 Identities=10% Similarity=0.234 Sum_probs=55.2
Q ss_pred CCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecc-------------------------ccccH
Q 009987 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA-------------------------LKINT 118 (521)
Q Consensus 64 ~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~-------------------------~d~~~ 118 (521)
++++++|.||++||++|+...|.++++++++++. .+.++.|+.. .|.+.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~------~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~ 95 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD------GLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDY 95 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC------CeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCch
Confidence 4588999999999999999999999999999742 3677777541 02345
Q ss_pred HHHHhCCCCcCceEEEec-CCcc
Q 009987 119 NLCDKFSVGHYPMLLWGS-PSKF 140 (521)
Q Consensus 119 ~l~~~f~I~~yPTl~~f~-~g~~ 140 (521)
.+.+.|++.++|+++++. +|++
T Consensus 96 ~~~~~~~v~~~P~~~vid~~G~v 118 (126)
T cd03012 96 ATWRAYGNQYWPALYLIDPTGNV 118 (126)
T ss_pred HHHHHhCCCcCCeEEEECCCCcE
Confidence 677889999999888874 5543
No 98
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.75 E-value=2.4e-09 Score=101.73 Aligned_cols=101 Identities=21% Similarity=0.445 Sum_probs=87.2
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCC
Q 009987 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (521)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I 126 (521)
.++.++.+|+...+... ++++|+|||||.|+...|+|+.+|.--.+ -.|.++.||.+ .|+-+.-+|-|
T Consensus 25 ~~~~~~eenw~~~l~ge----wmi~~~ap~~psc~~~~~~~~~~a~~s~d------L~v~va~VDvt--~npgLsGRF~v 92 (248)
T KOG0913|consen 25 KLTRIDEENWKELLTGE----WMIEFGAPWCPSCSDLIPHLENFATVSLD------LGVKVAKVDVT--TNPGLSGRFLV 92 (248)
T ss_pred eeEEecccchhhhhchH----HHHHhcCCCCccccchHHHHhccCCccCC------CceeEEEEEEE--eccccceeeEE
Confidence 58899999999988753 69999999999999999999998865443 24899999986 58899999999
Q ss_pred CcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHh
Q 009987 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (521)
Q Consensus 127 ~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~ 173 (521)
...|||+-..+|.+ .+|.|.|+..+++.|+..+
T Consensus 93 taLptIYHvkDGeF--------------rrysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 93 TALPTIYHVKDGEF--------------RRYSGARDKNDFISFEEHR 125 (248)
T ss_pred EecceEEEeecccc--------------ccccCcccchhHHHHHHhh
Confidence 99999999888755 4689999999999999754
No 99
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.73 E-value=8.8e-08 Score=102.71 Aligned_cols=107 Identities=20% Similarity=0.346 Sum_probs=80.7
Q ss_pred eecCcc-cHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHH-HHHHHhCCCCCCCCCeEEEEEeecccc--ccHHHHHhC
Q 009987 49 VELNAT-NFDAVLRDTPATYAVVEFFANWCPACRNYKPQYE-KVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKF 124 (521)
Q Consensus 49 ~~L~~~-~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~-~lA~~~~~~~~~~~~~v~~~~VDc~~d--~~~~l~~~f 124 (521)
..++.. ..++.+.+.++++|+|+|||+||-.||.+++..- +.....+- ..++..++|.+.+ ++.++-++|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~------~~~vlLqaDvT~~~p~~~~lLk~~ 530 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL------QDVVLLQADVTANDPAITALLKRL 530 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc------CCeEEEEeeecCCCHHHHHHHHHc
Confidence 445554 8889999988889999999999999999988643 33222221 3488999998743 345678999
Q ss_pred CCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHh
Q 009987 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (521)
Q Consensus 125 ~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~ 173 (521)
|+-|.|++++|+++- ++...+.|..+++.+.+++++.
T Consensus 531 ~~~G~P~~~ff~~~g------------~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 531 GVFGVPTYLFFGPQG------------SEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCCCCEEEEECCCC------------CcCcCCcceecHHHHHHHHHHh
Confidence 999999999997431 2223378899999999999764
No 100
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=3.3e-08 Score=92.82 Aligned_cols=90 Identities=23% Similarity=0.437 Sum_probs=75.8
Q ss_pred ccCcceec-CcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHH
Q 009987 44 EVDHAVEL-NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCD 122 (521)
Q Consensus 44 ~~~~v~~L-~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~ 122 (521)
.+..+.-+ +.+.++..+..++.+.++|+|||.|-+.|++++|.|.+|..+|+. +.++|++||. ...++.+.
T Consensus 122 gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~------~~lkFGkvDi--Grfpd~a~ 193 (265)
T KOG0914|consen 122 GPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN------NLLKFGKVDI--GRFPDVAA 193 (265)
T ss_pred CchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCC------CCCcccceee--ccCcChHH
Confidence 34456777 567777788777778899999999999999999999999999975 4699999998 46888999
Q ss_pred hCCCC------cCceEEEecCCccc
Q 009987 123 KFSVG------HYPMLLWGSPSKFV 141 (521)
Q Consensus 123 ~f~I~------~yPTl~~f~~g~~~ 141 (521)
+|+|. ..||+.+|..|+-.
T Consensus 194 kfris~s~~srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 194 KFRISLSPGSRQLPTYILFQKGKEV 218 (265)
T ss_pred heeeccCcccccCCeEEEEccchhh
Confidence 99884 67999999988644
No 101
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.72 E-value=8.6e-08 Score=83.39 Aligned_cols=103 Identities=12% Similarity=0.178 Sum_probs=77.6
Q ss_pred ccHHHHHh--cCCCCeEEEEEecCCChhHhhhhHH-H--HHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCc
Q 009987 54 TNFDAVLR--DTPATYAVVEFFANWCPACRNYKPQ-Y--EKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGH 128 (521)
Q Consensus 54 ~~f~~~l~--~~~~~~vlV~FyA~WCg~C~~~~P~-~--~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~ 128 (521)
.+|++++. ...+++++|.|+++||++|+.+... | +++.+.++ ....+..+|.+..+...+++.|++.+
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~-------~~~v~~~~d~~~~e~~~~~~~~~~~~ 76 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR-------ENFIFWQCDIDSSEGQRFLQSYKVDK 76 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH-------hCEEEEEecCCCccHHHHHHHhCccC
Confidence 35565553 2336899999999999999999764 4 44666664 24677788887667788999999999
Q ss_pred CceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhc
Q 009987 129 YPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (521)
Q Consensus 129 yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l 174 (521)
+|++.++.+. + +..+..+.|..+.+++...+++.+
T Consensus 77 ~P~~~~i~~~---~--------g~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 77 YPHIAIIDPR---T--------GEVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred CCeEEEEeCc---c--------CcEeEEEcCCCCHHHHHHHHHHHH
Confidence 9999998541 0 144567889999999999887754
No 102
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.71 E-value=4.7e-08 Score=93.71 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=53.8
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc---------cccH
Q 009987 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL---------KINT 118 (521)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~---------d~~~ 118 (521)
+..+++..+. +.+.+++++||.|||+||++|+..+|.++++++++.+. .+.|+.|+|++ ++..
T Consensus 24 l~d~~G~~vs--L~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~------g~~vvgv~~~~~~~~e~d~~e~~~ 95 (199)
T PTZ00056 24 VKTLEGTTVP--MSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL------GLEILAFPTSQFLNQEFPNTKDIR 95 (199)
T ss_pred EECCCCCEEe--HHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC------ceEEEEecchhccCCCCCCHHHHH
Confidence 3344444332 23334689999999999999999999999999999742 48889998731 2345
Q ss_pred HHHHhCCCCcCceE
Q 009987 119 NLCDKFSVGHYPML 132 (521)
Q Consensus 119 ~l~~~f~I~~yPTl 132 (521)
..++++++. ||.+
T Consensus 96 ~f~~~~~~~-fpvl 108 (199)
T PTZ00056 96 KFNDKNKIK-YNFF 108 (199)
T ss_pred HHHHHcCCC-ceee
Confidence 567777763 5543
No 103
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.69 E-value=6.5e-08 Score=82.21 Aligned_cols=69 Identities=22% Similarity=0.493 Sum_probs=57.2
Q ss_pred CCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecccc---------------------ccHHHHHh
Q 009987 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK---------------------INTNLCDK 123 (521)
Q Consensus 65 ~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d---------------------~~~~l~~~ 123 (521)
+++++|.||++||++|+...+.+.++.+++.+ ..+.++.|+++.+ .+..+.+.
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~------~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKD------DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKA 92 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCC------CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHh
Confidence 57899999999999999999999999999863 3488999998531 12678999
Q ss_pred CCCCcCceEEEec-CCc
Q 009987 124 FSVGHYPMLLWGS-PSK 139 (521)
Q Consensus 124 f~I~~yPTl~~f~-~g~ 139 (521)
|++.++|+++++. +|+
T Consensus 93 ~~~~~~P~~~l~d~~g~ 109 (116)
T cd02966 93 YGVRGLPTTFLIDRDGR 109 (116)
T ss_pred cCcCccceEEEECCCCc
Confidence 9999999998874 443
No 104
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.69 E-value=7.8e-08 Score=94.19 Aligned_cols=119 Identities=9% Similarity=0.144 Sum_probs=72.0
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc------c---ccH
Q 009987 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL------K---INT 118 (521)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~------d---~~~ 118 (521)
+..++++.+. +.+.+++++||.|||+||++|+...|.++++++++++. .+.++.|+|+. + +..
T Consensus 84 l~d~~G~~vs--Lsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~------Gv~VIgV~~d~~~~~e~~s~~ei~ 155 (236)
T PLN02399 84 VKDIDGKDVA--LSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ------GFEILAFPCNQFGGQEPGSNPEIK 155 (236)
T ss_pred EECCCCCEEe--HHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC------CcEEEEEecccccccCCCCHHHHH
Confidence 3344444332 33334688999999999999999999999999999753 37888888741 1 122
Q ss_pred HHH-HhCCCCcCceEEEe-cCCccc-----------CC------CCC-----CCccchhhhhccccCCHHHHHHHHHHhc
Q 009987 119 NLC-DKFSVGHYPMLLWG-SPSKFV-----------AG------SWE-----PNQEKKEIRALEDWQTADGLLTWINKQT 174 (521)
Q Consensus 119 ~l~-~~f~I~~yPTl~~f-~~g~~~-----------~~------~~~-----~~~~~~~v~~~~G~~~~~~L~~~i~~~l 174 (521)
+.+ +++++. ||.+.-. .+|... .+ .+. ...+++.+.++.|..+.++|.+.|++.+
T Consensus 156 ~f~~~~~g~~-fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 156 QFACTRFKAE-FPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred HHHHHhcCCC-CccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 333 455554 5532101 111000 00 000 0122345567788889999999888765
Q ss_pred c
Q 009987 175 S 175 (521)
Q Consensus 175 ~ 175 (521)
.
T Consensus 235 ~ 235 (236)
T PLN02399 235 A 235 (236)
T ss_pred c
Confidence 3
No 105
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.64 E-value=1.7e-07 Score=77.93 Aligned_cols=65 Identities=12% Similarity=0.170 Sum_probs=54.3
Q ss_pred HhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEE
Q 009987 60 LRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 60 l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~ 134 (521)
+.+-.+..-+..|+++||++|....+.++++++.+ +.+.+..+|. ++..+++.+|+|.++||+++
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~--------~~i~~~~vd~--~~~~e~a~~~~V~~vPt~vi 71 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLN--------PNIEHEMIDG--ALFQDEVEERGIMSVPAIFL 71 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHC--------CCceEEEEEh--HhCHHHHHHcCCccCCEEEE
Confidence 33334456788999999999999999999999875 3488999997 46789999999999999975
No 106
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.63 E-value=2.5e-07 Score=82.14 Aligned_cols=106 Identities=14% Similarity=0.172 Sum_probs=85.6
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCC---ChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhC
Q 009987 48 AVELNATNFDAVLRDTPATYAVVEFFANW---CPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (521)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vlV~FyA~W---Cg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f 124 (521)
...++..+++..+...+ .-|.|.+.- ++.+-..+=.++++++++.+ ..+.+++||+ |++++++.+|
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~vl~~~gdp~r~~E~~D~avvleELa~e~~~------~~v~~akVDi--D~~~~LA~~f 87 (132)
T PRK11509 19 WTPVSESRLDDWLTQAP---DGVVLLSSDPKRTPEVSDNPVMIGELLREFPD------YTWQVAIADL--EQSEAIGDRF 87 (132)
T ss_pred CCccccccHHHHHhCCC---cEEEEeCCCCCcCCccccHHHHHHHHHHHhcC------CceEEEEEEC--CCCHHHHHHc
Confidence 44567788888887653 345566543 78888888899999999953 3499999998 5789999999
Q ss_pred CCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcccC
Q 009987 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRS 177 (521)
Q Consensus 125 ~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~~~ 177 (521)
||+++||+++|++|+.. ..+.|.++.+++.++|.+.+.+.
T Consensus 88 gV~siPTLl~FkdGk~v-------------~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 88 GVFRFPATLVFTGGNYR-------------GVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred CCccCCEEEEEECCEEE-------------EEEeCcCCHHHHHHHHHHHhcCc
Confidence 99999999999998554 45788999999999999988653
No 107
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.61 E-value=1.5e-07 Score=85.14 Aligned_cols=83 Identities=23% Similarity=0.404 Sum_probs=60.3
Q ss_pred cCcccHHHHHhcCCCCeEEEEEecC-CChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc---------------
Q 009987 51 LNATNFDAVLRDTPATYAVVEFFAN-WCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL--------------- 114 (521)
Q Consensus 51 L~~~~f~~~l~~~~~~~vlV~FyA~-WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~--------------- 114 (521)
++++.+. +.+.++++++|.||++ |||+|+..+|.+.++++.+++. .+.++.|....
T Consensus 16 ~~g~~~~--l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~------~v~~v~v~~~~~~~~~~~~~~~~~~~ 87 (146)
T PF08534_consen 16 LDGKPVS--LSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK------GVDVVGVSSDDDPPVREFLKKYGINF 87 (146)
T ss_dssp TTSEEEE--GGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT------TCEEEEEEESSSHHHHHHHHHTTTTS
T ss_pred CCCCEec--HHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC------ceEEEEecccCCHHHHHHHHhhCCCc
Confidence 4444443 3444568899999999 9999999999999999987653 25565555422
Q ss_pred ----cccHHHHHhCCCC---------cCceEEEe-cCCccc
Q 009987 115 ----KINTNLCDKFSVG---------HYPMLLWG-SPSKFV 141 (521)
Q Consensus 115 ----d~~~~l~~~f~I~---------~yPTl~~f-~~g~~~ 141 (521)
|.+..+.+.|++. ++|+++++ ++|++.
T Consensus 88 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~ 128 (146)
T PF08534_consen 88 PVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVV 128 (146)
T ss_dssp EEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEE
T ss_pred eEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEE
Confidence 3345788899988 99987665 566543
No 108
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.60 E-value=4.5e-07 Score=86.25 Aligned_cols=70 Identities=21% Similarity=0.328 Sum_probs=49.2
Q ss_pred CCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeec-------------cc---cccHHHHHhCCCC
Q 009987 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC-------------AL---KINTNLCDKFSVG 127 (521)
Q Consensus 64 ~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc-------------~~---d~~~~l~~~f~I~ 127 (521)
++++++|.|||+||++|+.+.|.+.++.+... ..+.++..|- +. ..+.++.+.|+|.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~-------~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~ 145 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE-------TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVG 145 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC-------CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCC
Confidence 45889999999999999999999999887642 1233333220 00 1145778899999
Q ss_pred cCceEEEe-cCCcc
Q 009987 128 HYPMLLWG-SPSKF 140 (521)
Q Consensus 128 ~yPTl~~f-~~g~~ 140 (521)
++|+.+++ ++|++
T Consensus 146 ~~P~~~lID~~G~I 159 (189)
T TIGR02661 146 KIPYGVLLDQDGKI 159 (189)
T ss_pred ccceEEEECCCCeE
Confidence 99977665 46654
No 109
>PLN02412 probable glutathione peroxidase
Probab=98.52 E-value=3.7e-07 Score=85.09 Aligned_cols=105 Identities=10% Similarity=0.159 Sum_probs=69.0
Q ss_pred CCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc------cccHH----HHHhCCCCcCceEE
Q 009987 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL------KINTN----LCDKFSVGHYPMLL 133 (521)
Q Consensus 64 ~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~------d~~~~----l~~~f~I~~yPTl~ 133 (521)
+++++||.|||+||++|+..+|.++++.+++++. .+.++.|+++. +...+ .++++++. ||.+.
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~------g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~-fpvl~ 100 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ------GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAE-FPIFD 100 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC------CcEEEEecccccccCCCCCHHHHHHHHHHccCCC-CceEe
Confidence 4588999999999999999999999999999753 38888998742 12222 24677775 77754
Q ss_pred Ee-cCC-cccC--------------C--CCCC-----CccchhhhhccccCCHHHHHHHHHHhcc
Q 009987 134 WG-SPS-KFVA--------------G--SWEP-----NQEKKEIRALEDWQTADGLLTWINKQTS 175 (521)
Q Consensus 134 ~f-~~g-~~~~--------------~--~~~~-----~~~~~~v~~~~G~~~~~~L~~~i~~~l~ 175 (521)
-+ .+| .... . .+.+ ..+++.+..+.|..+.++|.+.|.+.+.
T Consensus 101 ~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 101 KVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred EEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 22 222 1100 0 0000 1223445566788888899888877654
No 110
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.51 E-value=2.3e-07 Score=75.75 Aligned_cols=62 Identities=24% Similarity=0.559 Sum_probs=45.0
Q ss_pred CCeEEEEEecCCChhHhhhhHHH---HHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEEec
Q 009987 65 ATYAVVEFFANWCPACRNYKPQY---EKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGS 136 (521)
Q Consensus 65 ~~~vlV~FyA~WCg~C~~~~P~~---~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~f~ 136 (521)
++++||+|+|+||++|+.+...+ .++.+.+. .++.++.||.+. .+... .+..+++|+++++.
T Consensus 17 ~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~-------~~fv~v~vd~~~-~~~~~--~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 17 GKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN-------KNFVLVKVDVDD-EDPNA--QFDRQGYPTFFFLD 81 (82)
T ss_dssp TSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH-------HCSEEEEEETTT-HHHHH--HHHHCSSSEEEEEE
T ss_pred CCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH-------CCEEEEEEEcCC-CChhH--HhCCccCCEEEEeC
Confidence 58999999999999999999877 44555444 347888999853 33333 22227799999875
No 111
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.50 E-value=3.5e-07 Score=83.74 Aligned_cols=62 Identities=13% Similarity=0.285 Sum_probs=45.9
Q ss_pred CCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc---------cccHHHHHh-CCCCcCceE
Q 009987 63 TPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL---------KINTNLCDK-FSVGHYPML 132 (521)
Q Consensus 63 ~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~---------d~~~~l~~~-f~I~~yPTl 132 (521)
.++++++|+|||+||+ |+..+|.++++++++++. .+.++.|+++. ++..+.+++ +++. ||.+
T Consensus 20 ~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~------~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~-fp~~ 91 (152)
T cd00340 20 YKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR------GLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVT-FPMF 91 (152)
T ss_pred hCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC------CEEEEEeccCccccCCCCCHHHHHHHHHHhcCCC-ceee
Confidence 3468899999999999 999999999999999742 48888887632 123445554 5653 6654
No 112
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.47 E-value=8.3e-07 Score=81.31 Aligned_cols=46 Identities=11% Similarity=0.106 Sum_probs=39.4
Q ss_pred hcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeec
Q 009987 61 RDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC 112 (521)
Q Consensus 61 ~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc 112 (521)
.+.+++++||.|||+||++|+..+|.++++++++++. .+.++.|+|
T Consensus 18 ~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~------~~~v~~i~~ 63 (153)
T TIGR02540 18 EKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPS------HFNVLAFPC 63 (153)
T ss_pred HHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC------CeEEEEEec
Confidence 3345688899999999999999999999999999742 488899987
No 113
>smart00594 UAS UAS domain.
Probab=98.46 E-value=8.7e-07 Score=78.18 Aligned_cols=104 Identities=12% Similarity=0.196 Sum_probs=75.5
Q ss_pred cccHHHHHhcC--CCCeEEEEEecCCChhHhhhhHHH---HHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCC
Q 009987 53 ATNFDAVLRDT--PATYAVVEFFANWCPACRNYKPQY---EKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG 127 (521)
Q Consensus 53 ~~~f~~~l~~~--~~~~vlV~FyA~WCg~C~~~~P~~---~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~ 127 (521)
..+|++++... .+|+++|.|+++||+.|+.+.-.. .++.+.++ ..+.+..+|.+..+..+++..|+++
T Consensus 13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~-------~~fv~~~~dv~~~eg~~l~~~~~~~ 85 (122)
T smart00594 13 QGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR-------ENFIFWQVDVDTSEGQRVSQFYKLD 85 (122)
T ss_pred eCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH-------cCEEEEEecCCChhHHHHHHhcCcC
Confidence 45677665332 357899999999999999998653 34555554 2477888898877888999999999
Q ss_pred cCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHH
Q 009987 128 HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (521)
Q Consensus 128 ~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i 170 (521)
++|++.++.+..-. .....+.++.|..+.++|+.++
T Consensus 86 ~~P~~~~l~~~~g~-------~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 86 SFPYVAIVDPRTGQ-------RVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CCCEEEEEecCCCc-------eeEEEeccccCCCCHHHHHHhh
Confidence 99999998532100 0012345678999999998875
No 114
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.43 E-value=1.2e-06 Score=82.85 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=41.5
Q ss_pred ceecCcccHHHHHhcCCCCeE-EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecc
Q 009987 48 AVELNATNFDAVLRDTPATYA-VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (521)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~v-lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~ 113 (521)
+..++++.+. +.+.+++++ |+.|||+|||+|+..+|.++++.+++++. .+.++.|+|+
T Consensus 25 l~d~~G~~vs--Ls~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~------gv~vv~vs~~ 83 (183)
T PTZ00256 25 AIDIDGQLVQ--LSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ------GLEILAFPCN 83 (183)
T ss_pred eEcCCCCEEe--HHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC------CcEEEEEecc
Confidence 3445554433 233345644 55669999999999999999999999742 3888889873
No 115
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.32 E-value=3.6e-06 Score=78.43 Aligned_cols=102 Identities=12% Similarity=0.160 Sum_probs=70.1
Q ss_pred CCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc---------------------------cc
Q 009987 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL---------------------------KI 116 (521)
Q Consensus 64 ~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~---------------------------d~ 116 (521)
+++++||.||++||+.|+...|.+.++.+++.+ ..+.++.|.++. +.
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~------~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~ 97 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA------KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDE 97 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh------CCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECC
Confidence 347899999999999999999999999999864 247788887642 12
Q ss_pred cHHHHHhCCCCcCceEEEe-cCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcc
Q 009987 117 NTNLCDKFSVGHYPMLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (521)
Q Consensus 117 ~~~l~~~f~I~~yPTl~~f-~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~ 175 (521)
+..+++.|+|...|+++++ ++|++.-..... .....+.+..+.+++.+-|+..+.
T Consensus 98 ~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 98 TQEVAKAYGAACTPDFFLFDPDGKLVYRGRID----DSRPGNDPPVTGRDLRAALDALLA 153 (171)
T ss_pred chHHHHHcCCCcCCcEEEECCCCeEEEeeccc----CCcccccccccHHHHHHHHHHHHc
Confidence 3456788999999988877 466543210000 000111234567888888887764
No 116
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.28 E-value=4e-06 Score=70.50 Aligned_cols=66 Identities=30% Similarity=0.599 Sum_probs=56.4
Q ss_pred CCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCC--CCcCceEEEecCC
Q 009987 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFS--VGHYPMLLWGSPS 138 (521)
Q Consensus 65 ~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~--I~~yPTl~~f~~g 138 (521)
+++++|.||++||++|+.++|.+.++++.+.. .+.+..+|.. +.+..+...|+ +..+|++.++.++
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-------~~~~~~i~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~ 99 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-------DVEVVAVNVD-DENPDLAAEFGVAVRSIPTLLLFKDG 99 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-------CcEEEEEECC-CCChHHHHHHhhhhccCCeEEEEeCc
Confidence 47789999999999999999999999999862 4778888873 25788999999 9999999987665
No 117
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.24 E-value=2.6e-06 Score=75.64 Aligned_cols=72 Identities=14% Similarity=0.235 Sum_probs=45.1
Q ss_pred cHHHHH--hcCCCCeEEEEEecCCChhHhhhhHHH---HHHHHHhCCCCCCCCCeEEEEEeeccc-cccHHHHHhCCCCc
Q 009987 55 NFDAVL--RDTPATYAVVEFFANWCPACRNYKPQY---EKVARLFNGPNAAHPGIILMTRVDCAL-KINTNLCDKFSVGH 128 (521)
Q Consensus 55 ~f~~~l--~~~~~~~vlV~FyA~WCg~C~~~~P~~---~~lA~~~~~~~~~~~~~v~~~~VDc~~-d~~~~l~~~f~I~~ 128 (521)
+|++.+ +...+++++|.|+++||++|+.+.... .++.+.++ ..+.++.++.+. +.+.. ..+ .+
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~-------~~Fv~V~l~~d~td~~~~---~~g-~~ 79 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ-------EDFIMLNLVHETTDKNLS---PDG-QY 79 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH-------hCeEEEEEEeccCCCCcC---ccC-cc
Confidence 555544 233468999999999999999999764 33444443 124445555421 11221 234 78
Q ss_pred CceEEEecC
Q 009987 129 YPMLLWGSP 137 (521)
Q Consensus 129 yPTl~~f~~ 137 (521)
+||++|+.+
T Consensus 80 vPtivFld~ 88 (130)
T cd02960 80 VPRIMFVDP 88 (130)
T ss_pred cCeEEEECC
Confidence 999999843
No 118
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.6e-05 Score=79.02 Aligned_cols=124 Identities=16% Similarity=0.265 Sum_probs=93.5
Q ss_pred ccCcceecCcccHHHHHhcCC-CCeEEEEEecC----CChhHhhhhHHHHHHHHHhCCCCCCCCC--eEEEEEeeccccc
Q 009987 44 EVDHAVELNATNFDAVLRDTP-ATYAVVEFFAN----WCPACRNYKPQYEKVARLFNGPNAAHPG--IILMTRVDCALKI 116 (521)
Q Consensus 44 ~~~~v~~L~~~~f~~~l~~~~-~~~vlV~FyA~----WCg~C~~~~P~~~~lA~~~~~~~~~~~~--~v~~~~VDc~~d~ 116 (521)
.++.|+.+++++|...+...+ +..++|.|.|. -|.-|+.+..+|.-+|+.+...++. .+ ++.|..||. ++
T Consensus 38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~-sn~tklFF~~Vd~--~e 114 (331)
T KOG2603|consen 38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPF-SNGTKLFFCMVDY--DE 114 (331)
T ss_pred CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCC-CCcceEEEEEEec--cc
Confidence 466799999999999987554 44578888884 4999999999999999998654432 23 789999997 56
Q ss_pred cHHHHHhCCCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhccc
Q 009987 117 NTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (521)
Q Consensus 117 ~~~l~~~f~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~~ 176 (521)
.+++.+.++++..|++++|+|.+-.. + .......++-+..+|++.+|++.....
T Consensus 115 ~p~~Fq~l~ln~~P~l~~f~P~~~n~-----~-~s~~~d~~~~g~~Ae~iaqfv~~~tkv 168 (331)
T KOG2603|consen 115 SPQVFQQLNLNNVPHLVLFSPAKGNK-----K-RSDQMDQQDLGFEAEQIAQFVADRTKV 168 (331)
T ss_pred cHHHHHHhcccCCCeEEEeCCCcccc-----c-cCccchhhhcchhHHHHHHHHHHhhhh
Confidence 89999999999999999997643211 1 112222233335599999999987653
No 119
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.20 E-value=3e-06 Score=76.81 Aligned_cols=70 Identities=21% Similarity=0.411 Sum_probs=53.6
Q ss_pred CCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc-----------------------cccHHHH
Q 009987 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-----------------------KINTNLC 121 (521)
Q Consensus 65 ~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-----------------------d~~~~l~ 121 (521)
++.+.++|-|.|||+||.|.|.++++.+.+++.+. .+-++-|+-+. +.-++++
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~----~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~ 108 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAA----PFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLS 108 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCC----ceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHH
Confidence 48899999999999999999999999999976542 24444444322 1235788
Q ss_pred HhCCCCcCceEEEec-CC
Q 009987 122 DKFSVGHYPMLLWGS-PS 138 (521)
Q Consensus 122 ~~f~I~~yPTl~~f~-~g 138 (521)
++|+|.++|++.+.. +|
T Consensus 109 ~ky~v~~iP~l~i~~~dG 126 (157)
T KOG2501|consen 109 EKYEVKGIPALVILKPDG 126 (157)
T ss_pred HhcccCcCceeEEecCCC
Confidence 999999999998864 44
No 120
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.19 E-value=6e-06 Score=72.10 Aligned_cols=67 Identities=15% Similarity=0.403 Sum_probs=53.7
Q ss_pred CCCeEEEEEecC-CChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc-------------------cccHHHHHh
Q 009987 64 PATYAVVEFFAN-WCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------KINTNLCDK 123 (521)
Q Consensus 64 ~~~~vlV~FyA~-WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-------------------d~~~~l~~~ 123 (521)
.+++++|.||++ ||++|+...+.+.++.++++.. .+.++.|..+. |.+..+++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~------~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 97 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK------GVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKA 97 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT------TEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccc------eEEeeecccccccchhhhhhhhccccccccCcchHHHHH
Confidence 458999999999 9999999999999999998743 47787777642 234567888
Q ss_pred CCCC------cCceEEEec
Q 009987 124 FSVG------HYPMLLWGS 136 (521)
Q Consensus 124 f~I~------~yPTl~~f~ 136 (521)
|++. .+|+++++.
T Consensus 98 ~~~~~~~~~~~~p~~~lid 116 (124)
T PF00578_consen 98 FGIEDEKDTLALPAVFLID 116 (124)
T ss_dssp TTCEETTTSEESEEEEEEE
T ss_pred cCCccccCCceEeEEEEEC
Confidence 8888 888877764
No 121
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.16 E-value=5.3e-06 Score=74.22 Aligned_cols=70 Identities=13% Similarity=0.145 Sum_probs=51.2
Q ss_pred CCeEEEEEe-cCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc-------------------cccHHHHHhC
Q 009987 65 ATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------KINTNLCDKF 124 (521)
Q Consensus 65 ~~~vlV~Fy-A~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-------------------d~~~~l~~~f 124 (521)
+++++|.|| +.||+.|....|.+.++++.+.+. .+.++.|..+. |.+..+.+.|
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~------~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 96 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL------GAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAY 96 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC------CCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHh
Confidence 578999999 589999999999999999988642 35666665421 2345677788
Q ss_pred CCCcC---------ceEEEec-CCcc
Q 009987 125 SVGHY---------PMLLWGS-PSKF 140 (521)
Q Consensus 125 ~I~~y---------PTl~~f~-~g~~ 140 (521)
||... |+++++. +|++
T Consensus 97 gv~~~~~~~~~~~~p~~~lid~~G~v 122 (140)
T cd03017 97 GVWGEKKKKYMGIERSTFLIDPDGKI 122 (140)
T ss_pred CCccccccccCCcceeEEEECCCCEE
Confidence 88877 7776664 4543
No 122
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.15 E-value=6.9e-06 Score=76.51 Aligned_cols=44 Identities=11% Similarity=0.230 Sum_probs=35.6
Q ss_pred cCCCCeEEEEEecCC-ChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecc
Q 009987 62 DTPATYAVVEFFANW-CPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (521)
Q Consensus 62 ~~~~~~vlV~FyA~W-Cg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~ 113 (521)
+.++++++|.||++| |++|+..+|.+.++++++. .+.++.|.++
T Consensus 41 ~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--------~~~vv~vs~D 85 (167)
T PRK00522 41 DFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--------NTVVLCISAD 85 (167)
T ss_pred HhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--------CcEEEEEeCC
Confidence 334678999999999 9999999999999998873 2566666654
No 123
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.15 E-value=7.5e-06 Score=60.89 Aligned_cols=60 Identities=30% Similarity=0.637 Sum_probs=47.4
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHH---HhCCCCcCceEEEecCC
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLC---DKFSVGHYPMLLWGSPS 138 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~---~~f~I~~yPTl~~f~~g 138 (521)
++.||++||++|+.+.+.+.++ +... ..+.+..+|++. ..... ..+++.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLN-------KGVKFEAVDVDE--DPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhC-------CCcEEEEEEcCC--ChHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 3222 458999999853 33333 48999999999998765
No 124
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.10 E-value=9.6e-06 Score=63.62 Aligned_cols=54 Identities=19% Similarity=0.426 Sum_probs=40.9
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccc--cHHHHHhCCCCcCceEEEe
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFSVGHYPMLLWG 135 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~--~~~l~~~f~I~~yPTl~~f 135 (521)
+..|+++||++|++..+.+++. .+.+..+|.+.+. ..++.+.+++.++||+.++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~-------------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~ 57 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK-------------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG 57 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC-------------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC
Confidence 5789999999999998887651 2567778875322 1346778999999999884
No 125
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.07 E-value=1.3e-05 Score=76.05 Aligned_cols=93 Identities=16% Similarity=0.069 Sum_probs=62.1
Q ss_pred CCCeEEEEEe-cCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc-----------------------cccHH
Q 009987 64 PATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-----------------------KINTN 119 (521)
Q Consensus 64 ~~~~vlV~Fy-A~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-----------------------d~~~~ 119 (521)
+++++||.|| ++||++|+...|.+.++.+++.+.+ +.++.|.++. |.+..
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g------v~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~ 103 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG------VEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGV 103 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC------CcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccH
Confidence 4578999999 9999999999999999999986432 4555555431 22456
Q ss_pred HHHhCCCC------cCceEEEe-cCCcccCCCCCCCccchhhhhccccCCHHHHHHHHH
Q 009987 120 LCDKFSVG------HYPMLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWIN 171 (521)
Q Consensus 120 l~~~f~I~------~yPTl~~f-~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~ 171 (521)
+++.|||. ..|+.+++ ++|++... .+..-...++.+++++.|+
T Consensus 104 ~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~---------~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 104 LTRNFGVLIEEAGLADRGTFVIDPEGVIQAV---------EITDNGIGRDASELLRKIK 153 (187)
T ss_pred HHHHhCCcccCCCceeeEEEEECCCCEEEEE---------EEeCCCCCCCHHHHHHHHH
Confidence 78888886 35866666 46654321 0011112357888887774
No 126
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.05 E-value=1.9e-05 Score=76.58 Aligned_cols=93 Identities=18% Similarity=0.316 Sum_probs=68.0
Q ss_pred HHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc---------cccHHHHHhCCCCc
Q 009987 58 AVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL---------KINTNLCDKFSVGH 128 (521)
Q Consensus 58 ~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~---------d~~~~l~~~f~I~~ 128 (521)
..|.+..+++-|+.||.+.|+.|+.++|.++.+++++. +.+..|+.+. -.+..+.+++||..
T Consensus 113 ~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg---------~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~ 183 (215)
T PF13728_consen 113 KALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG---------FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKV 183 (215)
T ss_pred HHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC---------CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCc
Confidence 45555455778999999999999999999999999984 5555666531 13578999999999
Q ss_pred CceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHH
Q 009987 129 YPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (521)
Q Consensus 129 yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i 170 (521)
+|++++..++.. .-...-.|..+.++|.+-|
T Consensus 184 ~Pal~Lv~~~~~-----------~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 184 TPALFLVNPNTK-----------KWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred CCEEEEEECCCC-----------eEEEEeeecCCHHHHHHhh
Confidence 999998765320 1112235778888887543
No 127
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.02 E-value=2.1e-05 Score=73.52 Aligned_cols=43 Identities=12% Similarity=0.168 Sum_probs=35.3
Q ss_pred CCCeEEEEEe-cCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeec
Q 009987 64 PATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC 112 (521)
Q Consensus 64 ~~~~vlV~Fy-A~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc 112 (521)
+++++||.|| ++||++|....|.+.++++++.+. .+.++.|.+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~------~v~vv~Is~ 71 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL------NAEVLGVST 71 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC------CCEEEEEec
Confidence 3578999999 899999999999999999999743 355666654
No 128
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.98 E-value=3.1e-05 Score=69.81 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=32.9
Q ss_pred CeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecc
Q 009987 66 TYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (521)
Q Consensus 66 ~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~ 113 (521)
..+|+.|+++||++|+...|.+.++.+++.+ ..+.++.|+.+
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~------~~v~vv~V~~~ 66 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLPELDA------LGVELVAVGPE 66 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHHHHHh------cCeEEEEEeCC
Confidence 3444444699999999999999999999964 23778888764
No 129
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.97 E-value=1.2e-05 Score=75.95 Aligned_cols=75 Identities=13% Similarity=0.275 Sum_probs=52.2
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc---------cccH
Q 009987 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL---------KINT 118 (521)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~---------d~~~ 118 (521)
+..++++.+. +.+.+++++||.|||+||+.|++ .|.++++.+++++ ..+.|+++.|.+ ++-.
T Consensus 10 ~~~~~G~~v~--Ls~~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~------~gl~Vlg~p~nqf~~qe~~~~~ei~ 80 (183)
T PRK10606 10 VTTIDGEVTT--LEKYAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWAD------QGFVVLGFPCNQFLGQEPGSDEEIK 80 (183)
T ss_pred eECCCCCEEe--HHHhCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhh------CCeEEEEeeccccccCCCCCHHHHH
Confidence 3444444333 34445689999999999999975 8899999999974 348999998842 1234
Q ss_pred HHHH-hCCCCcCceE
Q 009987 119 NLCD-KFSVGHYPML 132 (521)
Q Consensus 119 ~l~~-~f~I~~yPTl 132 (521)
+.|+ +|++. ||.+
T Consensus 81 ~f~~~~~g~~-Fpv~ 94 (183)
T PRK10606 81 TYCRTTWGVT-FPMF 94 (183)
T ss_pred HHHHHccCCC-ceeE
Confidence 4565 67774 5644
No 130
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.97 E-value=3.4e-05 Score=73.25 Aligned_cols=96 Identities=17% Similarity=0.107 Sum_probs=65.9
Q ss_pred cCCCCeEEEEEe-cCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc-----------------------ccc
Q 009987 62 DTPATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-----------------------KIN 117 (521)
Q Consensus 62 ~~~~~~vlV~Fy-A~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-----------------------d~~ 117 (521)
+..++++++.|| +.||+.|....+.+.++++++.+.+ +.++.|..+. |.+
T Consensus 28 d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g------~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~ 101 (187)
T PRK10382 28 DTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG------VDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPT 101 (187)
T ss_pred HhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC------CEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCc
Confidence 335678999999 9999999999999999999996432 5555555432 234
Q ss_pred HHHHHhCCC----CcC--ceEEEe-cCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHH
Q 009987 118 TNLCDKFSV----GHY--PMLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (521)
Q Consensus 118 ~~l~~~f~I----~~y--PTl~~f-~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~ 172 (521)
..+++.||+ .+. |+.+++ ++|++... .+.....+++.+++++.|..
T Consensus 102 ~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~---------~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 102 GALTRNFDNMREDEGLADRATFVVDPQGIIQAI---------EVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred hHHHHHcCCCcccCCceeeEEEEECCCCEEEEE---------EEeCCCCCCCHHHHHHHHHh
Confidence 678899998 356 877776 46654321 11111234788999888854
No 131
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.94 E-value=2.5e-05 Score=71.40 Aligned_cols=43 Identities=9% Similarity=0.184 Sum_probs=34.7
Q ss_pred CCCeEEEEEecC-CChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeec
Q 009987 64 PATYAVVEFFAN-WCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC 112 (521)
Q Consensus 64 ~~~~vlV~FyA~-WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc 112 (521)
+++++||.||++ ||+.|+...+.+.++++.+++. .+.++.|+.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~------~v~vi~Is~ 72 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA------GVVVLGIST 72 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC------CCEEEEEcC
Confidence 457899999986 6888999999999999998753 366777765
No 132
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.93 E-value=3.3e-05 Score=74.23 Aligned_cols=96 Identities=8% Similarity=0.102 Sum_probs=64.3
Q ss_pred CCCeEEE-EEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc-------------------------ccc
Q 009987 64 PATYAVV-EFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------------KIN 117 (521)
Q Consensus 64 ~~~~vlV-~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-------------------------d~~ 117 (521)
++++++| .|+++||+.|....+.+.++++++++.+ +.++.|.++. |.+
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~------~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~ 99 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG------VELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADID 99 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC------CEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCC
Confidence 3566555 6899999999999999999999987532 5555555431 234
Q ss_pred HHHHHhCCCC------cCceEEEec-CCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhc
Q 009987 118 TNLCDKFSVG------HYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (521)
Q Consensus 118 ~~l~~~f~I~------~yPTl~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l 174 (521)
..+++.|||. .+|+++++. +|++.. ..+....++++.++++..|+...
T Consensus 100 ~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~---------~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 100 KELAREYNLIDENSGATVRGVFIIDPNQIVRW---------MIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred hHHHHHcCCccccCCcEEeEEEEECCCCEEEE---------EEEeCCCCCCCHHHHHHHHHHhh
Confidence 5677888874 478777764 554321 11122245689999998887643
No 133
>PRK15000 peroxidase; Provisional
Probab=97.83 E-value=6.5e-05 Score=72.14 Aligned_cols=94 Identities=10% Similarity=0.120 Sum_probs=63.4
Q ss_pred CCCeEEEEEecC-CChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc--------------------------cc
Q 009987 64 PATYAVVEFFAN-WCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL--------------------------KI 116 (521)
Q Consensus 64 ~~~~vlV~FyA~-WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~--------------------------d~ 116 (521)
++++++|.||+. ||+.|....|.+.++++++++.+ +.++.|.++. |.
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g------~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~ 106 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG------VEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADV 106 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC------CEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECC
Confidence 357899999995 99999999999999999997533 5666666542 12
Q ss_pred cHHHHHhCCCC------cCceEEEec-CCcccCCCCCCCccchhhhhccccCCHHHHHHHHHH
Q 009987 117 NTNLCDKFSVG------HYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (521)
Q Consensus 117 ~~~l~~~f~I~------~yPTl~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~ 172 (521)
+..+++.|||. .+|+.+++. +|++... .+....-+++.++++..++.
T Consensus 107 ~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~---------~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 107 KREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQ---------VVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred CcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEE---------EecCCCCCCCHHHHHHHHHH
Confidence 33566777776 577666653 5543321 11112334788888888864
No 134
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.83 E-value=3.3e-05 Score=61.45 Aligned_cols=54 Identities=15% Similarity=0.271 Sum_probs=37.5
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHh-----CCCCcCceEEEecCC
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDK-----FSVGHYPMLLWGSPS 138 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~-----f~I~~yPTl~~f~~g 138 (521)
++.||++||++|+++.+.++++. +.+-.+|.+. +...... +++.++|+++ +.+|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~-------------~~~~~idi~~--~~~~~~~~~~~~~~~~~vP~i~-~~~g 60 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG-------------AAYEWVDIEE--DEGAADRVVSVNNGNMTVPTVK-FADG 60 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-------------CceEEEeCcC--CHhHHHHHHHHhCCCceeCEEE-ECCC
Confidence 67899999999999999887653 2334566632 3333333 4899999984 5555
No 135
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.77 E-value=0.00014 Score=63.62 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=74.0
Q ss_pred cHHHHHh--cCCCCeEEEEEecC----CChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCc
Q 009987 55 NFDAVLR--DTPATYAVVEFFAN----WCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGH 128 (521)
Q Consensus 55 ~f~~~l~--~~~~~~vlV~FyA~----WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~ 128 (521)
+|++++. ....|+++|+||++ ||..|+.... =+++.+.++ ..+.+...|....+...++..+++++
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln-------~~fv~w~~dv~~~eg~~la~~l~~~~ 76 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYIN-------TRMLFWACSVAKPEGYRVSQALRERT 76 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHH-------cCEEEEEEecCChHHHHHHHHhCCCC
Confidence 4555542 22358899999999 9999976541 133444554 24788889998777889999999999
Q ss_pred CceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcc
Q 009987 129 YPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (521)
Q Consensus 129 yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~ 175 (521)
||++.++-+.. + .-+.+.++.|..++++|+..+...+.
T Consensus 77 ~P~~~~l~~~~---~------~~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 77 YPFLAMIMLKD---N------RMTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred CCEEEEEEecC---C------ceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 99998873210 0 11345678999999999998876543
No 136
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.76 E-value=0.00012 Score=72.55 Aligned_cols=96 Identities=15% Similarity=0.237 Sum_probs=69.5
Q ss_pred HHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecccc---------ccHHHHHhCCCCcC
Q 009987 59 VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK---------INTNLCDKFSVGHY 129 (521)
Q Consensus 59 ~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d---------~~~~l~~~f~I~~y 129 (521)
.|....+++-||.||.+-|+.|++++|.++.+++++. +.+..|+.+.. .+...++++||..+
T Consensus 144 ~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg---------i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~ 214 (256)
T TIGR02739 144 AIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG---------ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYF 214 (256)
T ss_pred HHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC---------CeEEEEecCCCCCCCCCCccCChHHHHhcCCccC
Confidence 4444334678999999999999999999999999984 56666665322 23568899999999
Q ss_pred ceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhc
Q 009987 130 PMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (521)
Q Consensus 130 PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l 174 (521)
|++++..++.. .-...-.|..+.++|.+-|...+
T Consensus 215 Pal~Lv~~~t~-----------~~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 215 PALYLVNPKSQ-----------KMSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred ceEEEEECCCC-----------cEEEEeeccCCHHHHHHHHHHHH
Confidence 99998754311 11112358899999988775543
No 137
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00056 Score=61.61 Aligned_cols=87 Identities=17% Similarity=0.351 Sum_probs=64.0
Q ss_pred CCCeEEEEEecCCChhHhhhhHHHH---HHHHHhCCCCCCCCCeEEEEEeeccc--------------cccHHHHHhCCC
Q 009987 64 PATYAVVEFFANWCPACRNYKPQYE---KVARLFNGPNAAHPGIILMTRVDCAL--------------KINTNLCDKFSV 126 (521)
Q Consensus 64 ~~~~vlV~FyA~WCg~C~~~~P~~~---~lA~~~~~~~~~~~~~v~~~~VDc~~--------------d~~~~l~~~f~I 126 (521)
.++..++.|-++-|..|-++..... ++.+.+. +.+.++.+|... ....+++++|+|
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk-------~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~v 113 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK-------EHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAV 113 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh-------hCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcc
Confidence 3578899999999999999997763 3445554 457777777642 123589999999
Q ss_pred CcCceEEEec-CCcccCCCCCCCccchhhhhccccCCHHHHHHHH
Q 009987 127 GHYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (521)
Q Consensus 127 ~~yPTl~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i 170 (521)
+++||+++|. .| +.+..+.|....++++..+
T Consensus 114 rstPtfvFfdk~G-------------k~Il~lPGY~ppe~Fl~vl 145 (182)
T COG2143 114 RSTPTFVFFDKTG-------------KTILELPGYMPPEQFLAVL 145 (182)
T ss_pred ccCceEEEEcCCC-------------CEEEecCCCCCHHHHHHHH
Confidence 9999999985 33 3445567888888776654
No 138
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.75 E-value=0.00014 Score=58.40 Aligned_cols=73 Identities=18% Similarity=0.317 Sum_probs=51.3
Q ss_pred EEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEEecCCcccCCCCCCCc
Q 009987 70 VEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQ 149 (521)
Q Consensus 70 V~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~f~~g~~~~~~~~~~~ 149 (521)
|.+++++|+.|......+++++..+. +.+-.+|. .+.+++ .+|||.++|++++ +|+
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~---------i~~ei~~~--~~~~~~-~~ygv~~vPalvI--ng~---------- 58 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG---------IEVEIIDI--EDFEEI-EKYGVMSVPALVI--NGK---------- 58 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT---------EEEEEEET--TTHHHH-HHTT-SSSSEEEE--TTE----------
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC---------CeEEEEEc--cCHHHH-HHcCCCCCCEEEE--CCE----------
Confidence 44478889999999999999998873 55555554 234555 9999999999976 332
Q ss_pred cchhhhhccc-cCCHHHHHHHHH
Q 009987 150 EKKEIRALED-WQTADGLLTWIN 171 (521)
Q Consensus 150 ~~~~v~~~~G-~~~~~~L~~~i~ 171 (521)
..+.| ..+.++|.+||+
T Consensus 59 -----~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 59 -----VVFVGRVPSKEELKELLE 76 (76)
T ss_dssp -----EEEESS--HHHHHHHHHH
T ss_pred -----EEEEecCCCHHHHHHHhC
Confidence 23566 667788888774
No 139
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.70 E-value=0.00018 Score=72.64 Aligned_cols=111 Identities=16% Similarity=0.131 Sum_probs=75.5
Q ss_pred ccCcceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhh------HHHHHHHHHhCCCCCCCCCeEEEEEeecccccc
Q 009987 44 EVDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYK------PQYEKVARLFNGPNAAHPGIILMTRVDCALKIN 117 (521)
Q Consensus 44 ~~~~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~------P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~ 117 (521)
-.+.|+.||..||++++++. ...+|.||.|-= .-+... ...-+|+.+.-+. ..|.|+.||. .++
T Consensus 32 GkDRVi~LneKNfk~~lKky--d~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~-----~gigfg~VD~--~Kd 101 (383)
T PF01216_consen 32 GKDRVIDLNEKNFKRALKKY--DVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLED-----KGIGFGMVDS--KKD 101 (383)
T ss_dssp SS--CEEE-TTTHHHHHHH---SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGG-----CTEEEEEEET--TTT
T ss_pred CccceEEcchhHHHHHHHhh--cEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccc-----cCcceEEecc--HHH
Confidence 45679999999999999987 666777887763 222221 2234455555432 3599999997 578
Q ss_pred HHHHHhCCCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcccCc
Q 009987 118 TNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSY 178 (521)
Q Consensus 118 ~~l~~~f~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~~~~ 178 (521)
..+++++|+...+++++|++|.. ..|.|.++++.|+.||...+...+
T Consensus 102 ~klAKKLgv~E~~SiyVfkd~~~--------------IEydG~~saDtLVeFl~dl~edPV 148 (383)
T PF01216_consen 102 AKLAKKLGVEEEGSIYVFKDGEV--------------IEYDGERSADTLVEFLLDLLEDPV 148 (383)
T ss_dssp HHHHHHHT--STTEEEEEETTEE--------------EEE-S--SHHHHHHHHHHHHSSSE
T ss_pred HHHHHhcCccccCcEEEEECCcE--------------EEecCccCHHHHHHHHHHhcccch
Confidence 99999999999999999998743 458899999999999998876544
No 140
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.70 E-value=0.00012 Score=66.16 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=33.9
Q ss_pred CeEEEEEe-cCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeec
Q 009987 66 TYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC 112 (521)
Q Consensus 66 ~~vlV~Fy-A~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc 112 (521)
++++|.|| ++||+.|....|.++++++++.+. .+.++.|..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~------~v~vi~vs~ 70 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAA------GAEVLGISV 70 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC------CCEEEEecC
Confidence 67788887 999999999999999999999642 366777764
No 141
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.67 E-value=9.6e-05 Score=66.51 Aligned_cols=59 Identities=15% Similarity=0.331 Sum_probs=42.4
Q ss_pred CCCeEEEEEecCC-ChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecccc-ccHHHHHhCCCCcCc
Q 009987 64 PATYAVVEFFANW-CPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK-INTNLCDKFSVGHYP 130 (521)
Q Consensus 64 ~~~~vlV~FyA~W-Cg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d-~~~~l~~~f~I~~yP 130 (521)
++++++|.||++| |++|+..+|.++++++++. .+.++.|+.+.. ...+..+++++..+|
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--------~~~vi~Is~d~~~~~~~~~~~~~~~~~~ 85 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--------NTVVLTISADLPFAQKRWCGAEGVDNVT 85 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--------CCEEEEEECCCHHHHHHHHHhcCCCCce
Confidence 4578999999999 6999999999999999873 267777776321 123344555554455
No 142
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.66 E-value=0.0001 Score=65.80 Aligned_cols=43 Identities=19% Similarity=0.381 Sum_probs=35.1
Q ss_pred CCCeEEEEEe-cCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeec
Q 009987 64 PATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC 112 (521)
Q Consensus 64 ~~~~vlV~Fy-A~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc 112 (521)
++++++|.|| +.||+.|+...|.+.+++++++. ..+.++.|..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~------~~~~~i~is~ 64 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK------GGAEVLGVSV 64 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEeC
Confidence 4578899999 78999999999999999999853 2366666664
No 143
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.63 E-value=0.00097 Score=57.92 Aligned_cols=113 Identities=21% Similarity=0.323 Sum_probs=77.5
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHH-HHhCCCCCCCCCeEEEEEeecc---ccccHHHHH
Q 009987 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVA-RLFNGPNAAHPGIILMTRVDCA---LKINTNLCD 122 (521)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA-~~~~~~~~~~~~~v~~~~VDc~---~d~~~~l~~ 122 (521)
..+.|+.-+|+.+|... +.+||.|=... |=-.-...|.++| +..... +.+-++.|-.. +.+|.++++
T Consensus 5 G~v~LD~~tFdKvi~kf--~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~-----~dLLvAeVGikDYGek~N~~Lae 75 (126)
T PF07912_consen 5 GCVPLDELTFDKVIPKF--KYVLVKFDVAY--PYGEKHDAFKKLAKEASASS-----DDLLVAEVGIKDYGEKENMELAE 75 (126)
T ss_dssp TSEEESTTHHHHHGGGS--SEEEEEEEESS----CHHHHHHHHHHHHHHCC------SSEEEEEEECBSSSS-CCHHHHH
T ss_pred ceeeccceehhheeccC--ceEEEEEeccC--CCcchHHHHHHHHHHHhcCC-----CceEEEEeCcccccchhHHHHHH
Confidence 47889999999999987 77999996543 2223346788999 444321 45888888653 346899999
Q ss_pred hCCC--CcCceEEEecCCcccCCCCCCCccchhhhhc--cccCCHHHHHHHHHHhcccCcCC
Q 009987 123 KFSV--GHYPMLLWGSPSKFVAGSWEPNQEKKEIRAL--EDWQTADGLLTWINKQTSRSYGL 180 (521)
Q Consensus 123 ~f~I--~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~--~G~~~~~~L~~~i~~~l~~~~~l 180 (521)
+|+| ..||.+++|..+ . ++...| .|..++++|..|+.++.+--+++
T Consensus 76 ry~i~ke~fPv~~LF~~~-~-----------~~pv~~p~~~~~t~~~l~~fvk~~t~~yigl 125 (126)
T PF07912_consen 76 RYKIDKEDFPVIYLFVGD-K-----------EEPVRYPFDGDVTADNLQRFVKSNTGLYIGL 125 (126)
T ss_dssp HTT-SCCC-SEEEEEESS-T-----------TSEEEE-TCS-S-HHHHHHHHHHTSS--TTS
T ss_pred HhCCCcccCCEEEEecCC-C-----------CCCccCCccCCccHHHHHHHHHhCCCeeecC
Confidence 9999 579999999843 1 233445 78899999999999987755443
No 144
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.58 E-value=0.00019 Score=69.61 Aligned_cols=93 Identities=9% Similarity=0.074 Sum_probs=62.5
Q ss_pred CCe-EEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc-------------------------cccH
Q 009987 65 ATY-AVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------------KINT 118 (521)
Q Consensus 65 ~~~-vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-------------------------d~~~ 118 (521)
+++ +|+.|+++||+.|....+.+.+++.++.+. .+.++.|.++. |.+.
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~------gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~ 101 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL------NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLG 101 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC------CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCc
Confidence 455 467999999999999999999999999753 26666676642 1234
Q ss_pred HHHHhCCCC-------cCceEEEec-CCcccCCCCCCCccchhhhhccccCCHHHHHHHHHH
Q 009987 119 NLCDKFSVG-------HYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (521)
Q Consensus 119 ~l~~~f~I~-------~yPTl~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~ 172 (521)
.+++.||+. ..|+++++. +|++... .+.....+++.++++..|+.
T Consensus 102 ~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~---------~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 102 KVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI---------MYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred hHHHHcCCCccCCCCceeeEEEEECCCCEEEEE---------EEcCCCCCCCHHHHHHHHHH
Confidence 567778873 568777764 5544321 01111234788888888865
No 145
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.58 E-value=0.00036 Score=61.09 Aligned_cols=78 Identities=17% Similarity=0.325 Sum_probs=48.3
Q ss_pred ccHHHHHhc--CCCCeEEEEEec-------CCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc-----cccHH
Q 009987 54 TNFDAVLRD--TPATYAVVEFFA-------NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-----KINTN 119 (521)
Q Consensus 54 ~~f~~~l~~--~~~~~vlV~FyA-------~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-----d~~~~ 119 (521)
++|.+.+.. .++++++|.|++ +|||.|++..|.+++.-.... ....++.|.+.. +.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~-------~~~~lv~v~VG~r~~Wkdp~n~ 78 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP-------ENARLVYVEVGDRPEWKDPNNP 78 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S-------TTEEEEEEE---HHHHC-TTSH
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC-------CCceEEEEEcCCHHHhCCCCCC
Confidence 455666654 445788999997 599999999999999877643 235666665531 11112
Q ss_pred HHH--hCCCCcCceEEEecCC
Q 009987 120 LCD--KFSVGHYPMLLWGSPS 138 (521)
Q Consensus 120 l~~--~f~I~~yPTl~~f~~g 138 (521)
.-. +++|+++|||+-+..+
T Consensus 79 fR~~p~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 79 FRTDPDLKLKGIPTLIRWETG 99 (119)
T ss_dssp HHH--CC---SSSEEEECTSS
T ss_pred ceEcceeeeeecceEEEECCC
Confidence 222 4999999999987543
No 146
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.56 E-value=0.00026 Score=69.81 Aligned_cols=95 Identities=12% Similarity=0.143 Sum_probs=67.0
Q ss_pred HHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecccc---------ccHHHHHhCCCCcC
Q 009987 59 VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK---------INTNLCDKFSVGHY 129 (521)
Q Consensus 59 ~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d---------~~~~l~~~f~I~~y 129 (521)
.|.+-.+.+-|+.||.+-|++|.+++|.++.+++.+. +.+..|+.+.. .+.....++||..+
T Consensus 137 ~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg---------~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~ 207 (248)
T PRK13703 137 AIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG---------LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYF 207 (248)
T ss_pred HHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC---------CeEEEEecCCCCCCCCCCCccChhHHHhcCCccc
Confidence 3433334677999999999999999999999999985 45555554310 23456789999999
Q ss_pred ceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHh
Q 009987 130 PMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (521)
Q Consensus 130 PTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~ 173 (521)
|++++..++.- .....-.|..+.++|.+-|...
T Consensus 208 PAl~Lv~~~t~-----------~~~pv~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 208 PALMLVDPKSG-----------SVRPLSYGFITQDDLAKRFLNV 240 (248)
T ss_pred ceEEEEECCCC-----------cEEEEeeccCCHHHHHHHHHHH
Confidence 99998754310 1112235888999998777554
No 147
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.55 E-value=0.00014 Score=58.85 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=40.8
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccc---cHHHHHhCCCCcCceEEE
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI---NTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~---~~~l~~~f~I~~yPTl~~ 134 (521)
++.|+++|||+|+...+.++++. .. +.+.+..||-..+. ...+.+.+++.++|++++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~-------~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i 60 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK-------PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI 60 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC-------CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 47899999999999999999876 22 22556666642111 123677789999999965
No 148
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.52 E-value=0.00038 Score=69.31 Aligned_cols=93 Identities=11% Similarity=0.165 Sum_probs=63.7
Q ss_pred CCeEEEEEe-cCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc--------------------------ccc
Q 009987 65 ATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL--------------------------KIN 117 (521)
Q Consensus 65 ~~~vlV~Fy-A~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~--------------------------d~~ 117 (521)
++++++.|| +.||+.|....|.+.++++++.+.+ +.++.|.++. |.+
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g------v~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~ 171 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG------VKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDIS 171 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC------CEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCC
Confidence 467788888 8999999999999999999997532 4455555432 224
Q ss_pred HHHHHhCCCC-----cCceEEEec-CCcccCCCCCCCccchhhhhccccCCHHHHHHHHHH
Q 009987 118 TNLCDKFSVG-----HYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (521)
Q Consensus 118 ~~l~~~f~I~-----~yPTl~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~ 172 (521)
..+++.|||. ..|+.+++. +|++... .+.....+++.++++..|..
T Consensus 172 ~~iakayGv~~~~g~a~R~tFIID~dG~I~~~---------~~~~~~~gr~v~eiLr~l~a 223 (261)
T PTZ00137 172 REVSKSFGLLRDEGFSHRASVLVDKAGVVKHV---------AVYDLGLGRSVDETLRLFDA 223 (261)
T ss_pred hHHHHHcCCCCcCCceecEEEEECCCCEEEEE---------EEeCCCCCCCHHHHHHHHHH
Confidence 5688889985 478777764 5654321 11222445788888887754
No 149
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.52 E-value=0.0002 Score=71.51 Aligned_cols=111 Identities=15% Similarity=0.231 Sum_probs=74.4
Q ss_pred CcceecC-cccHHHHHhcC-CCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHh
Q 009987 46 DHAVELN-ATNFDAVLRDT-PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDK 123 (521)
Q Consensus 46 ~~v~~L~-~~~f~~~l~~~-~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~ 123 (521)
..|.+++ ++.|-+.+... ++.+|||.||-+-++.|+.+...+..||..+. .++|++|... .- .+...
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp--------~vKFvkI~a~--~~-~~~~~ 193 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP--------EVKFVKIRAS--KC-PASEN 193 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T--------TSEEEEEEEC--GC-CTTTT
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC--------ceEEEEEehh--cc-CcccC
Confidence 3577775 47888887544 35689999999999999999999999999984 4899999863 11 26788
Q ss_pred CCCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHh
Q 009987 124 FSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (521)
Q Consensus 124 f~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~ 173 (521)
|.+...|||++|++|.....- . ..........+.++|..|+.++
T Consensus 194 f~~~~LPtllvYk~G~l~~~~-V-----~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 194 FPDKNLPTLLVYKNGDLIGNF-V-----GLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp S-TTC-SEEEEEETTEEEEEE-C-----TGGGCT-TT--HHHHHHHHHTT
T ss_pred CcccCCCEEEEEECCEEEEeE-E-----ehHHhcCCCCCHHHHHHHHHHc
Confidence 999999999999998755320 0 0011122346788888888764
No 150
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.51 E-value=0.00039 Score=66.86 Aligned_cols=92 Identities=10% Similarity=0.073 Sum_probs=59.9
Q ss_pred eEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc-------------------------cccHHHH
Q 009987 67 YAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------------KINTNLC 121 (521)
Q Consensus 67 ~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-------------------------d~~~~l~ 121 (521)
.+|+.|+++||+.|....+.+.++++++++. .+.++.|.++. |.+..++
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~------gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia 101 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR------NVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVA 101 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc------CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHH
Confidence 3466899999999999999999999999753 26666666542 2245678
Q ss_pred HhCCCC----cCc----eEEEe-cCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHh
Q 009987 122 DKFSVG----HYP----MLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (521)
Q Consensus 122 ~~f~I~----~yP----Tl~~f-~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~ 173 (521)
+.||+. +.| +.+++ ++|++... .+.....+++.+++.+.|...
T Consensus 102 ~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~---------~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 102 KLLGMIDPDAGSTLTVRAVFIIDPDKKIRLI---------LYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred HHcCCccccCCCCceeeEEEEECCCCeEEEE---------EecCCCCCCCHHHHHHHHHHH
Confidence 888875 334 34444 45544311 011112247888888888653
No 151
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.47 E-value=0.00041 Score=67.35 Aligned_cols=94 Identities=12% Similarity=0.081 Sum_probs=61.2
Q ss_pred CCeEE-EEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc-------------------------cccH
Q 009987 65 ATYAV-VEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------------KINT 118 (521)
Q Consensus 65 ~~~vl-V~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-------------------------d~~~ 118 (521)
+++++ +.|+++||+.|..+.+.+.+++.++++.+ +.++.|.++. |.+.
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g------~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~ 106 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN------TELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMG 106 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC------CEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCch
Confidence 45555 48889999999999999999999997533 5666666542 1234
Q ss_pred HHHHhCCCC-------cCceEEEe-cCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHh
Q 009987 119 NLCDKFSVG-------HYPMLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (521)
Q Consensus 119 ~l~~~f~I~-------~yPTl~~f-~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~ 173 (521)
.+++.||+. ..|+.+++ ++|++... .+....-+++.++++..|+..
T Consensus 107 ~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~---------~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 107 NVAKRLGMIHAESSTATVRAVFIVDDKGTVRLI---------LYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HHHHHcCCcccccCCceeEEEEEECCCCEEEEE---------EecCCCCCCCHHHHHHHHHHh
Confidence 667777763 25666655 45543321 111123347899998888653
No 152
>PRK13189 peroxiredoxin; Provisional
Probab=97.46 E-value=0.00044 Score=67.48 Aligned_cols=94 Identities=12% Similarity=0.094 Sum_probs=60.7
Q ss_pred CCeE-EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc-------------------------cccH
Q 009987 65 ATYA-VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------------KINT 118 (521)
Q Consensus 65 ~~~v-lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-------------------------d~~~ 118 (521)
++++ |+.|+++||+.|....+.+.++++++++.+ +.++.|.++. |.+.
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~------v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~ 108 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN------TELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRG 108 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC------CEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCcc
Confidence 4644 557789999999999999999999997533 5566665532 1234
Q ss_pred HHHHhCCCC-------cCceEEEe-cCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHh
Q 009987 119 NLCDKFSVG-------HYPMLLWG-SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (521)
Q Consensus 119 ~l~~~f~I~-------~yPTl~~f-~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~ 173 (521)
.+++.||+. .+|+++++ ++|++.. ..+.....+++.++++..|+..
T Consensus 109 ~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~---------~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 109 EIAKKLGMISPGKGTNTVRAVFIIDPKGIIRA---------ILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred HHHHHhCCCccccCCCceeEEEEECCCCeEEE---------EEecCCCCCCCHHHHHHHHHHh
Confidence 567777765 35655555 3554321 1111223567888888888653
No 153
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.42 E-value=0.0007 Score=55.46 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=54.2
Q ss_pred EEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccc--cHHHHHhCC--CCcCceEEEecCCcccCC
Q 009987 68 AVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFS--VGHYPMLLWGSPSKFVAG 143 (521)
Q Consensus 68 vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~--~~~l~~~f~--I~~yPTl~~f~~g~~~~~ 143 (521)
.++.|+.+||++|++....++++..++. .+.+..+|...+. ..++.+..+ +..+|++++ +|+..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~--------~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~i-- 69 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD--------DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHI-- 69 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc--------CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEE--
Confidence 3788999999999999999999987653 2667777774321 234544444 588999875 33221
Q ss_pred CCCCCccchhhhhccccCCHHHHHHHHHHhcc
Q 009987 144 SWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (521)
Q Consensus 144 ~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~ 175 (521)
| ..++|.++++++++
T Consensus 70 ---------------g--g~~~~~~~~~~~~~ 84 (85)
T PRK11200 70 ---------------G--GCTDFEAYVKENLG 84 (85)
T ss_pred ---------------c--CHHHHHHHHHHhcc
Confidence 1 35778888777654
No 154
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.00032 Score=60.37 Aligned_cols=76 Identities=17% Similarity=0.325 Sum_probs=55.4
Q ss_pred ccHHHHHhcC-CCCeEEEEEec--------CCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc-----cccHH
Q 009987 54 TNFDAVLRDT-PATYAVVEFFA--------NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-----KINTN 119 (521)
Q Consensus 54 ~~f~~~l~~~-~~~~vlV~FyA--------~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-----d~~~~ 119 (521)
++|++.+++. +++.++|.|++ ||||.|.+..|.+.+.-+... ..+.|+.|+... +.+..
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap-------~~~~~v~v~VG~rp~Wk~p~n~ 85 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP-------EDVHFVHVYVGNRPYWKDPANP 85 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC-------CceEEEEEEecCCCcccCCCCc
Confidence 5677766544 34558999998 799999999999998877442 458888888742 22334
Q ss_pred HHHhCCC-CcCceEEEec
Q 009987 120 LCDKFSV-GHYPMLLWGS 136 (521)
Q Consensus 120 l~~~f~I-~~yPTl~~f~ 136 (521)
.-.+.++ .++||++=+.
T Consensus 86 FR~d~~~lt~vPTLlrw~ 103 (128)
T KOG3425|consen 86 FRKDPGILTAVPTLLRWK 103 (128)
T ss_pred cccCCCceeecceeeEEc
Confidence 4556677 8999998765
No 155
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.39 E-value=0.00066 Score=65.05 Aligned_cols=94 Identities=11% Similarity=0.160 Sum_probs=62.0
Q ss_pred CCCeEEEEEec-CCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecccc--------------------------c
Q 009987 64 PATYAVVEFFA-NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--------------------------I 116 (521)
Q Consensus 64 ~~~~vlV~FyA-~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d--------------------------~ 116 (521)
.+++++|.||+ .||++|....+.+.++++++.+. .+.++.|+++.. .
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~------g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~ 108 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL------NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADK 108 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc------CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECc
Confidence 45788999995 88999999999999999999753 367777766421 2
Q ss_pred cHHHHHhCCCC------cCceEEEec-CCcccCCCCCCCccchhhhhccccCCHHHHHHHHHH
Q 009987 117 NTNLCDKFSVG------HYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (521)
Q Consensus 117 ~~~l~~~f~I~------~yPTl~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~ 172 (521)
+.++++.||+. .+|+.+++. +|++... .+....-+++.++++..|..
T Consensus 109 ~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~---------~~~~~~~~r~~~e~l~~l~a 162 (199)
T PTZ00253 109 TKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQI---------TVNDMPVGRNVEEVLRLLEA 162 (199)
T ss_pred HhHHHHHcCCcccCCCceEEEEEEECCCCEEEEE---------EecCCCCCCCHHHHHHHHHh
Confidence 34677888875 367666654 4443211 01111234677777777654
No 156
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.36 E-value=0.0006 Score=60.74 Aligned_cols=69 Identities=19% Similarity=0.356 Sum_probs=43.4
Q ss_pred HHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhC---CCCcCceEEEe
Q 009987 59 VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF---SVGHYPMLLWG 135 (521)
Q Consensus 59 ~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f---~I~~yPTl~~f 135 (521)
.++....+..++-|..+|||.|++..|.+.++++... .+.+--+.- |++.++..+| |.+.+||++++
T Consensus 35 ~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--------~i~~~~i~r--d~~~el~~~~lt~g~~~IP~~I~~ 104 (129)
T PF14595_consen 35 KLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP--------NIEVRIILR--DENKELMDQYLTNGGRSIPTFIFL 104 (129)
T ss_dssp HHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T--------TEEEEEE-H--HHHHHHTTTTTT-SS--SSEEEEE
T ss_pred HHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC--------CCeEEEEEe--cCChhHHHHHHhCCCeecCEEEEE
Confidence 4444445667888999999999999999999999852 244444432 4577776655 68899999998
Q ss_pred cC
Q 009987 136 SP 137 (521)
Q Consensus 136 ~~ 137 (521)
..
T Consensus 105 d~ 106 (129)
T PF14595_consen 105 DK 106 (129)
T ss_dssp -T
T ss_pred cC
Confidence 53
No 157
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.34 E-value=0.00035 Score=62.49 Aligned_cols=47 Identities=11% Similarity=0.213 Sum_probs=37.7
Q ss_pred CCCeEEEEEecCCChh-HhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecc
Q 009987 64 PATYAVVEFFANWCPA-CRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (521)
Q Consensus 64 ~~~~vlV~FyA~WCg~-C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~ 113 (521)
.+++++|.||++||++ |....|.+.++++++.+.+. +++.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~---~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGG---DDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhc---CceEEEEEEEC
Confidence 3578999999999997 99999999999999964210 14788888764
No 158
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.32 E-value=0.0009 Score=65.77 Aligned_cols=85 Identities=15% Similarity=0.268 Sum_probs=59.6
Q ss_pred CCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEe---------------------------------
Q 009987 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRV--------------------------------- 110 (521)
Q Consensus 64 ~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~V--------------------------------- 110 (521)
.++.+++.|.-+.||+|+++.++++++.+. + -.|.+..+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~------v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~ 177 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--G------ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGK 177 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--C------eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCC
Confidence 356789999999999999999998876431 0 01111111
Q ss_pred -----ecc--ccccHHHHHhCCCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHh
Q 009987 111 -----DCA--LKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (521)
Q Consensus 111 -----Dc~--~d~~~~l~~~f~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~ 173 (521)
.|. .+++.++++++||+++||++ |++|+ .+.|..+.++|.++|++.
T Consensus 178 ~~~~~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~----------------~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 178 DVSPASCDVDIADHYALGVQFGVQGTPAIV-LSNGT----------------LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred CCCcccccchHHHhHHHHHHcCCccccEEE-EcCCe----------------EeeCCCCHHHHHHHHHHc
Confidence 111 13567789999999999998 55553 346788999999998764
No 159
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.27 E-value=0.0016 Score=58.68 Aligned_cols=30 Identities=30% Similarity=0.592 Sum_probs=26.6
Q ss_pred CCeEEEEEecCCChhHhhhhHHHHHHHHHh
Q 009987 65 ATYAVVEFFANWCPACRNYKPQYEKVARLF 94 (521)
Q Consensus 65 ~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~ 94 (521)
.++.+++|+.++||+|+.+.|.++++...+
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 467899999999999999999999987664
No 160
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.18 E-value=0.00079 Score=64.29 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCChhHhhhhHHHHH
Q 009987 65 ATYAVVEFFANWCPACRNYKPQYEK 89 (521)
Q Consensus 65 ~~~vlV~FyA~WCg~C~~~~P~~~~ 89 (521)
++..++.|+.+.||+|+++.+.+.+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh
Confidence 4678999999999999999998876
No 161
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.05 E-value=0.0046 Score=57.61 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=82.0
Q ss_pred ccCcceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHh
Q 009987 44 EVDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDK 123 (521)
Q Consensus 44 ~~~~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~ 123 (521)
.-+.+..+|.+++....... ..++++.|+..-......+...++++|+.++ +.+.|+.+|+. ....+++.
T Consensus 75 ~~P~v~~~t~~n~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~-------~~~~f~~~d~~--~~~~~~~~ 144 (184)
T PF13848_consen 75 SFPLVPELTPENFEKLFSSP-KPPVLILFDNKDNESTEAFKKELQDIAKKFK-------GKINFVYVDAD--DFPRLLKY 144 (184)
T ss_dssp SSTSCEEESTTHHHHHHSTS-SEEEEEEEETTTHHHHHHHHHHHHHHHHCTT-------TTSEEEEEETT--TTHHHHHH
T ss_pred ccccccccchhhHHHHhcCC-CceEEEEEEcCCchhHHHHHHHHHHHHHhcC-------CeEEEEEeehH--HhHHHHHH
Confidence 34458899999999887764 1337788877778888999999999999886 45899999984 57889999
Q ss_pred CCCC--cCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHH
Q 009987 124 FSVG--HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (521)
Q Consensus 124 f~I~--~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~ 172 (521)
+||. .+|+++++....- .......|..+.++|.+|+++
T Consensus 145 ~~i~~~~~P~~vi~~~~~~-----------~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 145 FGIDEDDLPALVIFDSNKG-----------KYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTTTTSSSSEEEEEETTTS-----------EEEE--SSCGCHHHHHHHHHH
T ss_pred cCCCCccCCEEEEEECCCC-----------cEEcCCCCCCCHHHHHHHhcC
Confidence 9998 8999998763210 111112678999999999874
No 162
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=96.93 E-value=0.008 Score=50.07 Aligned_cols=88 Identities=18% Similarity=0.227 Sum_probs=64.3
Q ss_pred cHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEE
Q 009987 55 NFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 55 ~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~ 134 (521)
.++..+.. +.+++|-|+.++++ .....|.++|+.+++ .+.|+.++ +.++..++++.. |++.+
T Consensus 9 ~l~~~~~~--~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~-------~~~F~~~~-----~~~~~~~~~~~~-~~i~l 70 (97)
T cd02981 9 ELEKFLDK--DDVVVVGFFKDEES---EEYKTFEKVAESLRD-------DYGFGHTS-----DKEVAKKLKVKP-GSVVL 70 (97)
T ss_pred HHHHHhcc--CCeEEEEEECCCCc---HHHHHHHHHHHhccc-------CCeEEEEC-----hHHHHHHcCCCC-CceEE
Confidence 34444544 36789999999987 467899999999863 47777666 467888888764 89998
Q ss_pred ecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHH
Q 009987 135 GSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (521)
Q Consensus 135 f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~ 172 (521)
|++.. +....|.|..+.++|.+||..
T Consensus 71 ~~~~~------------~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 71 FKPFE------------EEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred eCCcc------------cCCccCCCCCCHHHHHHHHHh
Confidence 86531 122458888889999999864
No 163
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.85 E-value=0.0026 Score=58.64 Aligned_cols=78 Identities=14% Similarity=0.347 Sum_probs=49.0
Q ss_pred cCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhH-HH--HHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhC---
Q 009987 51 LNATNFDAVLRDTPATYAVVEFFANWCPACRNYKP-QY--EKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF--- 124 (521)
Q Consensus 51 L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P-~~--~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f--- 124 (521)
.+++.|+..-.+ +++++|.++.+||+.|..|.- .| .++|+.++ ..+.-++||- |+.+++-..|
T Consensus 25 w~~ea~~~Ak~e--~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN-------~~FI~VkvDr--ee~Pdid~~y~~~ 93 (163)
T PF03190_consen 25 WGEEALEKAKKE--NKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLN-------RNFIPVKVDR--EERPDIDKIYMNA 93 (163)
T ss_dssp SSHHHHHHHHHH--T--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHH-------HH-EEEEEET--TT-HHHHHHHHHH
T ss_pred CCHHHHHHHHhc--CCcEEEEEEecCCcchhhhcccCcCCHHHHHHHh-------CCEEEEEecc--ccCccHHHHHHHH
Confidence 345667766555 489999999999999999985 34 45677775 2456667885 6788888777
Q ss_pred -----CCCcCceEEEe-cCCc
Q 009987 125 -----SVGHYPMLLWG-SPSK 139 (521)
Q Consensus 125 -----~I~~yPTl~~f-~~g~ 139 (521)
|..|+|+.+|. ++|+
T Consensus 94 ~~~~~~~gGwPl~vfltPdg~ 114 (163)
T PF03190_consen 94 VQAMSGSGGWPLTVFLTPDGK 114 (163)
T ss_dssp HHHHHS---SSEEEEE-TTS-
T ss_pred HHHhcCCCCCCceEEECCCCC
Confidence 78899987775 4443
No 164
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.80 E-value=0.0089 Score=54.47 Aligned_cols=44 Identities=27% Similarity=0.551 Sum_probs=33.4
Q ss_pred CCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeec
Q 009987 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC 112 (521)
Q Consensus 64 ~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc 112 (521)
..+++|++|+..-||+|+.+.+.+.++.+.+-+. +.|.+.-.+.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~-----~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDP-----GKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-----TTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCC-----CceEEEEEEc
Confidence 3467899999999999999999999998887321 4576665543
No 165
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.79 E-value=0.0047 Score=50.82 Aligned_cols=58 Identities=24% Similarity=0.217 Sum_probs=40.1
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccc--cHHHHHhCC--CCcCceEEE
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFS--VGHYPMLLW 134 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~--~~~l~~~f~--I~~yPTl~~ 134 (521)
++.|..+|||+|++....++++..... .+.+..+|...+. ..++.+..+ ++.+|++++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--------~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi 63 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--------DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV 63 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE
Confidence 678999999999999888887754431 2556667764221 234556666 478999965
No 166
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.73 E-value=0.005 Score=68.33 Aligned_cols=78 Identities=14% Similarity=0.180 Sum_probs=60.8
Q ss_pred CeE-EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEEecCCcccCCC
Q 009987 66 TYA-VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGS 144 (521)
Q Consensus 66 ~~v-lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~f~~g~~~~~~ 144 (521)
+++ +-.|.+++|++|....-.+++++... ++|..-.+|.+ +.+++..+|+|.++|++++ +|+
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~--------~~i~~~~i~~~--~~~~~~~~~~v~~vP~~~i--~~~----- 538 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLN--------PNVEAEMIDVS--HFPDLKDEYGIMSVPAIVV--DDQ----- 538 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhC--------CCceEEEEECc--ccHHHHHhCCceecCEEEE--CCE-----
Confidence 344 44557999999999998999888875 24788888874 5799999999999999987 121
Q ss_pred CCCCccchhhhhccccCCHHHHHHHH
Q 009987 145 WEPNQEKKEIRALEDWQTADGLLTWI 170 (521)
Q Consensus 145 ~~~~~~~~~v~~~~G~~~~~~L~~~i 170 (521)
..+.|..+.++|+++|
T Consensus 539 ----------~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 539 ----------QVYFGKKTIEEMLELI 554 (555)
T ss_pred ----------EEEeeCCCHHHHHHhh
Confidence 2356777888888876
No 167
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.67 E-value=0.012 Score=49.32 Aligned_cols=97 Identities=19% Similarity=0.263 Sum_probs=71.3
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCC----c
Q 009987 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG----H 128 (521)
Q Consensus 53 ~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~----~ 128 (521)
-.+|+..+.... -|||.|..+-=.. -.....+.++|+.+++ .-.++-|||.+.+...+|.++.|. -
T Consensus 9 ~KdfKKLLRTr~--NVLvLy~ks~k~a-~~~Lk~~~~~A~~vkG-------~gT~~~vdCgd~e~kKLCKKlKv~~~~kp 78 (112)
T cd03067 9 HKDFKKLLRTRN--NVLVLYSKSAKSA-EALLKLLSDVAQAVKG-------QGTIAWIDCGDSESRKLCKKLKVDPSSKP 78 (112)
T ss_pred hHHHHHHHhhcC--cEEEEEecchhhH-HHHHHHHHHHHHHhcC-------ceeEEEEecCChHHHHHHHHHccCCCCCC
Confidence 367888876643 3788887765333 3344588889999874 457889999877789999999998 4
Q ss_pred Cc-eEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHH
Q 009987 129 YP-MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (521)
Q Consensus 129 yP-Tl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~ 172 (521)
-| +++.|++|.+- ..|+-..+...|+.|+..
T Consensus 79 ~~~~LkHYKdG~fH-------------kdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 79 KPVELKHYKDGDFH-------------TEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred CcchhhcccCCCcc-------------ccccchhhHHHHHHHhhC
Confidence 45 56678888664 346767888899988853
No 168
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.58 E-value=0.012 Score=51.31 Aligned_cols=78 Identities=15% Similarity=0.278 Sum_probs=65.1
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceE
Q 009987 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPML 132 (521)
Q Consensus 53 ~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl 132 (521)
....+++|.....+.++|-|.-.|-|.|.++...+.+.++.+.+ -..++-+|. ++-+++-+-|++...||+
T Consensus 11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn-------fa~Iylvdi--deV~~~~~~~~l~~p~tv 81 (142)
T KOG3414|consen 11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN-------FAVIYLVDI--DEVPDFVKMYELYDPPTV 81 (142)
T ss_pred HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh-------ceEEEEEec--chhhhhhhhhcccCCceE
Confidence 45677788777778999999999999999999999999999873 356777786 367889999999999998
Q ss_pred EEecCCc
Q 009987 133 LWGSPSK 139 (521)
Q Consensus 133 ~~f~~g~ 139 (521)
.+|-+++
T Consensus 82 mfFfn~k 88 (142)
T KOG3414|consen 82 MFFFNNK 88 (142)
T ss_pred EEEEcCc
Confidence 8875543
No 169
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.52 E-value=0.0031 Score=50.72 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=38.4
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccc---cHHHHHhCCCCcCceEEE
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI---NTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~---~~~l~~~f~I~~yPTl~~ 134 (521)
++.|+++|||+|+...+.++++... ..+..+|...+. ...+.+..|+.++|++++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~-----------~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~ 59 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK-----------PAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI 59 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC-----------cEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 5889999999999999999886543 334455543211 123556678999999854
No 170
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.50 E-value=0.0094 Score=45.21 Aligned_cols=53 Identities=23% Similarity=0.285 Sum_probs=37.9
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecccc--ccHHHHHhCCCCcCceEEE
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d--~~~~l~~~f~I~~yPTl~~ 134 (521)
++.|..+||++|++....+++ . ++.+-.+|.+.+ ...++.+..|..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~----~---------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE----K---------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH----T---------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH----c---------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 578999999999998877743 2 266677777543 2233444459999999987
No 171
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.49 E-value=0.0065 Score=47.13 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=35.0
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccc--cHHHHHhCCCCcCceEEE
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~--~~~l~~~f~I~~yPTl~~ 134 (521)
++.|+++||++|++..+.+++. .+.+..+|.+.+. ...+.+..++.++|++.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-------------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-------------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-------------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 6789999999999988777652 1344555653211 122333347899999976
No 172
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.48 E-value=0.01 Score=65.21 Aligned_cols=89 Identities=11% Similarity=0.167 Sum_probs=68.2
Q ss_pred HhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEEecCCc
Q 009987 60 LRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSK 139 (521)
Q Consensus 60 l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~f~~g~ 139 (521)
|..-.+...+-.|+++.||+|......++++|... +.|..-.||. .+++++..+|+|.++|++++ +++
T Consensus 111 i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~--------~~i~~~~id~--~~~~~~~~~~~v~~VP~~~i--~~~ 178 (517)
T PRK15317 111 IKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN--------PNITHTMIDG--ALFQDEVEARNIMAVPTVFL--NGE 178 (517)
T ss_pred HHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC--------CCceEEEEEc--hhCHhHHHhcCCcccCEEEE--CCc
Confidence 33333344588999999999999999999998863 3588888987 46899999999999999976 221
Q ss_pred ccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcc
Q 009987 140 FVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (521)
Q Consensus 140 ~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~ 175 (521)
..+.|..+.+++++.+.+..+
T Consensus 179 ---------------~~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 179 ---------------EFGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred ---------------EEEecCCCHHHHHHHHhcccc
Confidence 235677888888888876543
No 173
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.44 E-value=0.017 Score=57.53 Aligned_cols=84 Identities=18% Similarity=0.277 Sum_probs=55.5
Q ss_pred CCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEee----------------cc---------------
Q 009987 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVD----------------CA--------------- 113 (521)
Q Consensus 65 ~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VD----------------c~--------------- 113 (521)
.+.+++.|.-+-||+|+++.+++.++.+. +.|.+..+- |+
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~---------g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~ 187 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS---------GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGG 187 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc---------CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhh
Confidence 45679999999999999998887665432 112221111 10
Q ss_pred -----------------ccccHHHHHhCCCCcCceEEEec-CCcccCCCCCCCccchhhhhccccCCHHHHHHHHH
Q 009987 114 -----------------LKINTNLCDKFSVGHYPMLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWIN 171 (521)
Q Consensus 114 -----------------~d~~~~l~~~f~I~~yPTl~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~ 171 (521)
.++|..+.+++||+|+||+++-. +| .+..+.|..++++|.+.+.
T Consensus 188 ~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G--------------~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 188 KLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG--------------TLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--------------CEEEecCCCCHHHHHHHhC
Confidence 02345578899999999998853 22 1234568888888887764
No 174
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0044 Score=59.38 Aligned_cols=65 Identities=12% Similarity=0.298 Sum_probs=57.6
Q ss_pred CCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEEecCC
Q 009987 64 PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPS 138 (521)
Q Consensus 64 ~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~f~~g 138 (521)
+++..++.|||+||.+|.++.-.+..+++... .+.+++++. ++.++++..+.|...|++.++..|
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~--------~~~~~k~~a--~~~~eis~~~~v~~vp~~~~~~~~ 80 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK--------NAQFLKLEA--EEFPEISNLIAVEAVPYFVFFFLG 80 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh--------hheeeeehh--hhhhHHHHHHHHhcCceeeeeecc
Confidence 45778999999999999999999999999883 378899996 679999999999999999988655
No 175
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.15 E-value=0.02 Score=46.72 Aligned_cols=60 Identities=25% Similarity=0.409 Sum_probs=42.5
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeec--ccc----------------------------ccH
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC--ALK----------------------------INT 118 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc--~~d----------------------------~~~ 118 (521)
++.|+.+.||+|..+.|.++++..... +.+.+..+.. ... ++.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 73 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADD-------GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADT 73 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcC-------CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 468999999999999999999874433 3344443332 111 124
Q ss_pred HHHHhCCCCcCceEEEe
Q 009987 119 NLCDKFSVGHYPMLLWG 135 (521)
Q Consensus 119 ~l~~~f~I~~yPTl~~f 135 (521)
...+++||.++||+++.
T Consensus 74 ~~~~~~g~~g~Pt~v~~ 90 (98)
T cd02972 74 ALARALGVTGTPTFVVN 90 (98)
T ss_pred HHHHHcCCCCCCEEEEC
Confidence 56778999999999984
No 176
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=96.11 E-value=0.031 Score=49.28 Aligned_cols=76 Identities=14% Similarity=0.253 Sum_probs=61.1
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCc-e
Q 009987 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYP-M 131 (521)
Q Consensus 53 ~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yP-T 131 (521)
+-..+++|.+..++.+++-|.-+|=+.|.++...+.+.|+.+++ -..++.||. ++-+++.+-|.+. -| |
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~-------~a~IY~vDi--~~Vpdfn~~yel~-dP~t 77 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN-------FAVIYLVDI--DEVPDFNQMYELY-DPCT 77 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-------TEEEEEEET--TTTHCCHHHTTS--SSEE
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc-------ceEEEEEEc--ccchhhhcccccC-CCeE
Confidence 45678888777789999999999999999999999999999973 478889997 4678888999999 78 6
Q ss_pred EEEecCC
Q 009987 132 LLWGSPS 138 (521)
Q Consensus 132 l~~f~~g 138 (521)
++||-++
T Consensus 78 vmFF~rn 84 (133)
T PF02966_consen 78 VMFFFRN 84 (133)
T ss_dssp EEEEETT
T ss_pred EEEEecC
Confidence 7776443
No 177
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=96.10 E-value=0.0072 Score=56.56 Aligned_cols=77 Identities=16% Similarity=0.194 Sum_probs=65.9
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceE
Q 009987 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPML 132 (521)
Q Consensus 53 ~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl 132 (521)
+.+|-+.+..+ .-|++.||-+--..|+-+...++.||+.+- ..+|++||. +..+-++.+++|.-.||+
T Consensus 74 Ekdf~~~~~kS--~kVVcHFY~~~f~RCKimDkhLe~LAk~h~--------eTrFikvna--e~~PFlv~kL~IkVLP~v 141 (211)
T KOG1672|consen 74 EKDFFEEVKKS--EKVVCHFYRPEFFRCKIMDKHLEILAKRHV--------ETRFIKVNA--EKAPFLVTKLNIKVLPTV 141 (211)
T ss_pred HHHHHHHhhcC--ceEEEEEEcCCCcceehHHHHHHHHHHhcc--------cceEEEEec--ccCceeeeeeeeeEeeeE
Confidence 56676666665 337999999999999999999999999874 378999997 578899999999999999
Q ss_pred EEecCCccc
Q 009987 133 LWGSPSKFV 141 (521)
Q Consensus 133 ~~f~~g~~~ 141 (521)
.+|.+|+..
T Consensus 142 ~l~k~g~~~ 150 (211)
T KOG1672|consen 142 ALFKNGKTV 150 (211)
T ss_pred EEEEcCEEE
Confidence 999998654
No 178
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=95.81 E-value=0.14 Score=44.30 Aligned_cols=104 Identities=15% Similarity=0.094 Sum_probs=71.2
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHH---hCCCCCCCCCeEEEEEeeccccccHHHHHhC
Q 009987 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARL---FNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (521)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~---~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f 124 (521)
|.++|.++++...... .+..+.|+.+ ..=....+.++++|++ ++ +++.|+.+|.+ ......+.|
T Consensus 1 ~~e~t~e~~~~~~~~~--~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~k-------gki~Fv~~d~~--~~~~~~~~f 67 (111)
T cd03072 1 VREITFENAEELTEEG--LPFLILFHDK--DDLESLKEFKQAVARQLISEK-------GAINFLTADGD--KFRHPLLHL 67 (111)
T ss_pred CcccccccHHHHhcCC--CCeEEEEecc--hHHHHHHHHHHHHHHHHHhcC-------ceEEEEEEech--HhhhHHHHc
Confidence 3467788887655443 3445566622 2236678899999999 76 67999999974 344588999
Q ss_pred CCCc--CceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcc
Q 009987 125 SVGH--YPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (521)
Q Consensus 125 ~I~~--yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~ 175 (521)
|+.. .|.+.+...... .....+.+..+.++|.+|+.+.+.
T Consensus 68 gl~~~~~P~i~i~~~~~~-----------~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 68 GKTPADLPVIAIDSFRHM-----------YLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred CCCHhHCCEEEEEcchhc-----------CcCCCCccccCHHHHHHHHHHHhc
Confidence 9997 899998643210 011114567889999999998764
No 179
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.58 E-value=0.031 Score=42.94 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=37.0
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccc--cHHHHHhCCCCcCceEEE
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~--~~~l~~~f~I~~yPTl~~ 134 (521)
++.|+++||++|+...+.+++.. +.+..+|...+. ...+.+..+...+|++++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-------------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-------------IEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-------------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 57899999999999998887653 344566664322 234455567888998855
No 180
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.54 E-value=0.056 Score=59.45 Aligned_cols=89 Identities=12% Similarity=0.180 Sum_probs=66.2
Q ss_pred HhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEEecCCc
Q 009987 60 LRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSK 139 (521)
Q Consensus 60 l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~f~~g~ 139 (521)
+..-.+...+-.|+.+.||+|....-.+++++... +.|..-.+|. .+.+++..+|+|.++|++++ +++
T Consensus 112 ~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~--------p~i~~~~id~--~~~~~~~~~~~v~~VP~~~i--~~~ 179 (515)
T TIGR03140 112 IRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN--------PNISHTMIDG--ALFQDEVEALGIQGVPAVFL--NGE 179 (515)
T ss_pred HHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC--------CCceEEEEEc--hhCHHHHHhcCCcccCEEEE--CCc
Confidence 33333345588899999999998888888887764 3577778887 46899999999999999987 221
Q ss_pred ccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcc
Q 009987 140 FVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTS 175 (521)
Q Consensus 140 ~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~ 175 (521)
..+.|..+.+++++.+.+..+
T Consensus 180 ---------------~~~~g~~~~~~~~~~l~~~~~ 200 (515)
T TIGR03140 180 ---------------EFHNGRMDLAELLEKLEETAG 200 (515)
T ss_pred ---------------EEEecCCCHHHHHHHHhhccC
Confidence 235677788888777766544
No 181
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=95.45 E-value=0.09 Score=46.85 Aligned_cols=109 Identities=17% Similarity=0.295 Sum_probs=75.3
Q ss_pred cceecCcccHHH-HHhcCCCCeEEEEEecC--CChh-H-hhhhHHHHHHHHHhCCCCCCCCCe-EEEEEeeccccccHHH
Q 009987 47 HAVELNATNFDA-VLRDTPATYAVVEFFAN--WCPA-C-RNYKPQYEKVARLFNGPNAAHPGI-ILMTRVDCALKINTNL 120 (521)
Q Consensus 47 ~v~~L~~~~f~~-~l~~~~~~~vlV~FyA~--WCg~-C-~~~~P~~~~lA~~~~~~~~~~~~~-v~~~~VDc~~d~~~~l 120 (521)
.+++|+++++-+ .-.+ ++.-+|-|.-. -|.. + ..+...+.++|+.+++ + +.|+.+|.+ +...+
T Consensus 3 ~~~~l~~~~~~~~~C~~--~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kg-------k~i~Fv~vd~~--~~~~~ 71 (130)
T cd02983 3 EIIELTSEDVFEETCEE--KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKK-------KPWGWLWTEAG--AQLDL 71 (130)
T ss_pred ceEEecCHHHHHhhccC--CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcC-------CcEEEEEEeCc--ccHHH
Confidence 477888766533 3333 35666666432 1322 3 3557889999999984 4 899999974 45669
Q ss_pred HHhCCCC--cCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcccCc
Q 009987 121 CDKFSVG--HYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSY 178 (521)
Q Consensus 121 ~~~f~I~--~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~~~~ 178 (521)
.+.|||. ++|++.++...+ .....+.|..+.++|.+|+++.+....
T Consensus 72 ~~~fgl~~~~~P~v~i~~~~~------------~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 72 EEALNIGGFGYPAMVAINFRK------------MKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred HHHcCCCccCCCEEEEEeccc------------CccccccCccCHHHHHHHHHHHHcCCc
Confidence 9999996 499999876421 112225688999999999999987654
No 182
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=95.26 E-value=0.056 Score=51.35 Aligned_cols=110 Identities=19% Similarity=0.298 Sum_probs=82.8
Q ss_pred cceecC-cccHHHHHhcC-CCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhC
Q 009987 47 HAVELN-ATNFDAVLRDT-PATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (521)
Q Consensus 47 ~v~~L~-~~~f~~~l~~~-~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f 124 (521)
.|.+++ ...|-+.|... +...++|..|-+--+-|-++...+.=||.++ +.++|.++-. .+....++|
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAey--------P~vKFckiks---s~~gas~~F 207 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY--------PIVKFCKIKS---SNTGASDRF 207 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccC--------CceeEEEeee---ccccchhhh
Confidence 466664 57888888665 4457899999999999999999999999998 5689999885 367788999
Q ss_pred CCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHh
Q 009987 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (521)
Q Consensus 125 ~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~ 173 (521)
...+.||+++|++|.+.+. .. +....+.....+.+|.+|++++
T Consensus 208 ~~n~lP~LliYkgGeLIgN-Fv-----~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 208 SLNVLPTLLIYKGGELIGN-FV-----SVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred cccCCceEEEeeCCchhHH-HH-----HHHHHHhhhhhhhhHHHHHHHc
Confidence 9999999999999876531 00 1111223345677888888775
No 183
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.93 E-value=0.072 Score=42.88 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=38.2
Q ss_pred EEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccc-cHHHHHhCCCCcCceEEE
Q 009987 68 AVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI-NTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 68 vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~-~~~l~~~f~I~~yPTl~~ 134 (521)
-++.|..+||++|++..-.+++. .+.+-.+|++.+. ...+.+..|...+|++++
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~-------------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEK-------------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI 63 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHc-------------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence 47899999999999988777642 1445556664332 234555678999999975
No 184
>PHA03005 sulfhydryl oxidase; Provisional
Probab=94.93 E-value=0.11 Score=42.67 Aligned_cols=49 Identities=12% Similarity=0.226 Sum_probs=36.4
Q ss_pred cHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhccCChHHHHHHHHHHhcC
Q 009987 315 GLWVLLHSLSVRIDDGESQFTFTAVCDFIHNFFVCEECRQHFYQMCSSV 363 (521)
Q Consensus 315 glW~lfH~ltv~~~~~~~~~~~~~~~~~v~~Ff~C~~C~~hf~~~~~~~ 363 (521)
|+|+..|.+..++.+++..+.....---|-.-.||.+||.|=.+.+.++
T Consensus 9 a~W~vIFivi~k~~~~~~iE~cK~~lytI~~tLPC~~Cr~HA~~ai~kn 57 (96)
T PHA03005 9 AIWTVIFIVISKAKLDGNIEACKRKLYTICSTLPCPACRRHAKEAIEKN 57 (96)
T ss_pred hHHHHHHHHHHhccCCCcHHHHHHHHHHhhhcCCCHHHHHHHHHHHhhc
Confidence 6899999998898877765443333333345689999999998888765
No 185
>PHA03050 glutaredoxin; Provisional
Probab=94.89 E-value=0.061 Score=46.32 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=36.5
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecc---ccccHHHHHhCCCCcCceEEE
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA---LKINTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~---~d~~~~l~~~f~I~~yPTl~~ 134 (521)
++.|..+|||+|++..-.++++.-.. ..+.+..||-. .+....+-+.-|.+.+|++++
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~--------~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR--------GAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc--------CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 78899999999999887776653211 11333344320 011234555668889999966
No 186
>PRK10329 glutaredoxin-like protein; Provisional
Probab=94.87 E-value=0.17 Score=41.18 Aligned_cols=74 Identities=11% Similarity=0.057 Sum_probs=48.7
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccc-cHHHHHhCCCCcCceEEEecCCcccCCCCCC
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI-NTNLCDKFSVGHYPMLLWGSPSKFVAGSWEP 147 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~-~~~l~~~f~I~~yPTl~~f~~g~~~~~~~~~ 147 (521)
++.|..+||++|++..-.+++ + .|.+-.+|.+.+. ..+..+..|...+|++++- +.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~--------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~--~~-------- 59 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----R--------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIAG--DL-------- 59 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----C--------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEEC--CE--------
Confidence 677889999999998777754 1 2667777775322 1223445688899999761 10
Q ss_pred CccchhhhhccccCCHHHHHHHHHHhc
Q 009987 148 NQEKKEIRALEDWQTADGLLTWINKQT 174 (521)
Q Consensus 148 ~~~~~~v~~~~G~~~~~~L~~~i~~~l 174 (521)
..++.+.+.|.+++..+.
T Consensus 60 ---------~~~Gf~~~~l~~~~~~~~ 77 (81)
T PRK10329 60 ---------SWSGFRPDMINRLHPAPH 77 (81)
T ss_pred ---------EEecCCHHHHHHHHHhhh
Confidence 123577788888776654
No 187
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=94.87 E-value=0.13 Score=43.90 Aligned_cols=83 Identities=14% Similarity=0.229 Sum_probs=57.6
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc--cccHHHHHhCCCC-c
Q 009987 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL--KINTNLCDKFSVG-H 128 (521)
Q Consensus 52 ~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~--d~~~~l~~~f~I~-~ 128 (521)
+.+++++++..+.+++++|.=.++.||-.......|++...... +.+.++.+|.-. +-...++.+|||+ .
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~-------~~~~~y~l~v~~~R~vSn~IAe~~~V~He 78 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESP-------DEIPVYYLDVIEYRPVSNAIAEDFGVKHE 78 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----------EEEEEGGGGHHHHHHHHHHHT----
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCC-------ccceEEEEEEEeCchhHHHHHHHhCCCcC
Confidence 45788999988777887777788999999999999999888864 237788888742 2345789999998 4
Q ss_pred CceEEEecCCccc
Q 009987 129 YPMLLWGSPSKFV 141 (521)
Q Consensus 129 yPTl~~f~~g~~~ 141 (521)
-|.++++++|+..
T Consensus 79 SPQ~ili~~g~~v 91 (105)
T PF11009_consen 79 SPQVILIKNGKVV 91 (105)
T ss_dssp SSEEEEEETTEEE
T ss_pred CCcEEEEECCEEE
Confidence 7999999998644
No 188
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=94.35 E-value=0.14 Score=41.42 Aligned_cols=80 Identities=23% Similarity=0.351 Sum_probs=56.6
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEEecCCcccCCCCCCC
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPN 148 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~f~~g~~~~~~~~~~ 148 (521)
|+.|..+-|+-|......++++.... .+.+-.||.+ +++++..+|+. .+|.+.+-..+...
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~---------~~~l~~vDI~--~d~~l~~~Y~~-~IPVl~~~~~~~~~------- 62 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF---------PFELEEVDID--EDPELFEKYGY-RIPVLHIDGIRQFK------- 62 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS---------TCEEEEEETT--TTHHHHHHSCT-STSEEEETT-GGGC-------
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc---------CceEEEEECC--CCHHHHHHhcC-CCCEEEEcCccccc-------
Confidence 67899999999999988888765443 3788889985 67889999996 69998873321111
Q ss_pred ccchhhhhccccCCHHHHHHHHH
Q 009987 149 QEKKEIRALEDWQTADGLLTWIN 171 (521)
Q Consensus 149 ~~~~~v~~~~G~~~~~~L~~~i~ 171 (521)
......+..+.+.|.+||+
T Consensus 63 ----~~~~~~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 63 ----EQEELKWRFDEEQLRAWLE 81 (81)
T ss_dssp ----TSEEEESSB-HHHHHHHHH
T ss_pred ----ccceeCCCCCHHHHHHHhC
Confidence 0133456788999998874
No 189
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=94.31 E-value=0.57 Score=40.48 Aligned_cols=100 Identities=14% Similarity=0.155 Sum_probs=65.6
Q ss_pred eecCcccHHHHHhcCCCCeEEEEEe----cCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhC
Q 009987 49 VELNATNFDAVLRDTPATYAVVEFF----ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (521)
Q Consensus 49 ~~L~~~~f~~~l~~~~~~~vlV~Fy----A~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f 124 (521)
.++|.+|...... .+.++-|| +.-=..=..+...+.++|+.+++ +++.|+.+|.+ +.....+.|
T Consensus 2 ~~~~~en~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~------gki~Fv~~D~~--~~~~~l~~f 69 (111)
T cd03073 2 GHRTKDNRAQFTK----KPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPD------RKLNFAVADKE--DFSHELEEF 69 (111)
T ss_pred CeeccchHHHhcc----CCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcC------CeEEEEEEcHH--HHHHHHHHc
Confidence 3566677666632 22344443 22223345678899999999972 25999999974 455688999
Q ss_pred CCCc----CceEEEecCCcccCCCCCCCccchhhhhccccC-CHHHHHHHHHHh
Q 009987 125 SVGH----YPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQ-TADGLLTWINKQ 173 (521)
Q Consensus 125 ~I~~----yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~-~~~~L~~~i~~~ 173 (521)
|+.. .|++.++.... .. ....+.. +.++|.+|+.+.
T Consensus 70 gl~~~~~~~P~~~i~~~~~------------~K-Y~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 70 GLDFSGGEKPVVAIRTAKG------------KK-YVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CCCcccCCCCEEEEEeCCC------------Cc-cCCCcccCCHHHHHHHHHHh
Confidence 9984 99999865310 00 1134556 899999999764
No 190
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=94.13 E-value=0.06 Score=43.09 Aligned_cols=53 Identities=13% Similarity=0.322 Sum_probs=35.0
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecccc--ccHHHHHhCCCCcCceEEE
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d--~~~~l~~~f~I~~yPTl~~ 134 (521)
++.|..+|||+|......+++.. +.+-.+|++.+ .-.++.+..|..++|++++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~-------------i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i 55 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKG-------------VTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI 55 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcC-------------CCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence 35688999999999988887532 33344454322 1233445568889999865
No 191
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=93.93 E-value=0.07 Score=45.14 Aligned_cols=53 Identities=15% Similarity=0.090 Sum_probs=34.1
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecccccc-H----HHHHhCCCCcCceEEE
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKIN-T----NLCDKFSVGHYPMLLW 134 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~-~----~l~~~f~I~~yPTl~~ 134 (521)
++.|..||||+|++..-.+++.. +.+..+|.+.+.+ . .+.+..|.+.+|++++
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~-------------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi 67 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG-------------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV 67 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-------------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE
Confidence 78899999999999887666532 2233444432222 2 2344457889999855
No 192
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=93.91 E-value=0.13 Score=40.40 Aligned_cols=52 Identities=13% Similarity=0.219 Sum_probs=34.8
Q ss_pred EEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccc-cHHHHHhCCCCcCceEEE
Q 009987 70 VEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI-NTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 70 V~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~-~~~l~~~f~I~~yPTl~~ 134 (521)
+.|..++|++|+.....+++. .+.+-.+|.+.+. ..+...+.|..++|++++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-------------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-------------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-------------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 567889999999988777642 2556667764221 222334458889999876
No 193
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=93.82 E-value=0.19 Score=43.09 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=56.8
Q ss_pred cceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhh---HHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHh
Q 009987 47 HAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYK---PQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDK 123 (521)
Q Consensus 47 ~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~---P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~ 123 (521)
....++.++++..+... .. .|.|++.-|..+.... =.+-+|.+.+. +.+..+.++- +....+..+
T Consensus 10 g~~~vd~~~ld~~l~~~--~~-~vlf~~gDp~r~~E~~DvaVILPEL~~af~-------~~~~~avv~~--~~e~~L~~r 77 (107)
T PF07449_consen 10 GWPRVDADTLDAFLAAP--GD-AVLFFAGDPARFPETADVAVILPELVKAFP-------GRFRGAVVAR--AAERALAAR 77 (107)
T ss_dssp TEEEE-CCCHHHHHHCC--SC-EEEEESS-TTTSTTCCHHHHHHHHHHCTST-------TSEEEEEEEH--HHHHHHHHH
T ss_pred CCeeechhhHHHHHhCC--Cc-EEEEECCCCCcCcccccceeEcHHHHHhhh-------CccceEEECc--hhHHHHHHH
Confidence 46678899999999874 33 5677776654444333 34555555554 5567776773 567899999
Q ss_pred CCCCcCceEEEecCCccc
Q 009987 124 FSVGHYPMLLWGSPSKFV 141 (521)
Q Consensus 124 f~I~~yPTl~~f~~g~~~ 141 (521)
||+..+|++++|++|+..
T Consensus 78 ~gv~~~PaLvf~R~g~~l 95 (107)
T PF07449_consen 78 FGVRRWPALVFFRDGRYL 95 (107)
T ss_dssp HT-TSSSEEEEEETTEEE
T ss_pred hCCccCCeEEEEECCEEE
Confidence 999999999999998654
No 194
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=93.80 E-value=0.039 Score=55.44 Aligned_cols=99 Identities=17% Similarity=0.328 Sum_probs=73.2
Q ss_pred HHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEEecCC
Q 009987 59 VLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPS 138 (521)
Q Consensus 59 ~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~f~~g 138 (521)
++-.++..++-+.||++|||.-+...|.+.-....+. .|....++=. -.-..+..+|++.+.|++.+-..
T Consensus 70 ~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~--------~i~h~~vee~-~~lpsv~s~~~~~~~ps~~~~n~- 139 (319)
T KOG2640|consen 70 AIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFS--------SIQHFAVEES-QALPSVFSSYGIHSEPSNLMLNQ- 139 (319)
T ss_pred hhccccCCcccccchhcccCcccccCcccchhhhhcc--------ccccccHHHH-hhcccchhccccccCCcceeecc-
Confidence 3434334578899999999999999999998877774 2445555521 23456789999999999987532
Q ss_pred cccCCCCCCCccchhhhhccccCCHHHHHHHHHHhcccCcCC
Q 009987 139 KFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSRSYGL 180 (521)
Q Consensus 139 ~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~~~~~l 180 (521)
.-..+|.|.++...|++|..+.++-.+.+
T Consensus 140 -------------t~~~~~~~~r~l~sLv~fy~~i~~~~v~i 168 (319)
T KOG2640|consen 140 -------------TCPASYRGERDLASLVNFYTEITPMSVLI 168 (319)
T ss_pred -------------ccchhhcccccHHHHHHHHHhhccchhcc
Confidence 22356889999999999999988744433
No 195
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=93.69 E-value=0.31 Score=45.15 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEEecCCcccCCCCCCCccchhhhhcccc-C
Q 009987 83 YKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW-Q 161 (521)
Q Consensus 83 ~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~-~ 161 (521)
..-.|.++|+.+. +.+.|+.++ +.+++.+++|.. |++++|+++. +....|.|. .
T Consensus 8 ~~~~f~~~A~~~~-------~~~~F~~~~-----~~~~~~~~~~~~-p~i~~~k~~~------------~~~~~y~~~~~ 62 (184)
T PF13848_consen 8 LFEIFEEAAEKLK-------GDYQFGVTF-----NEELAKKYGIKE-PTIVVYKKFD------------EKPVVYDGDKF 62 (184)
T ss_dssp HHHHHHHHHHHHT-------TTSEEEEEE------HHHHHHCTCSS-SEEEEEECTT------------TSEEEESSSTT
T ss_pred HHHHHHHHHHhCc-------CCcEEEEEc-----HHHHHHHhCCCC-CcEEEeccCC------------CCceecccccC
Confidence 4567899999997 347888877 467999999999 9999997631 223457787 8
Q ss_pred CHHHHHHHHHHhcccCc
Q 009987 162 TADGLLTWINKQTSRSY 178 (521)
Q Consensus 162 ~~~~L~~~i~~~l~~~~ 178 (521)
+.++|.+||..+.-+.+
T Consensus 63 ~~~~l~~fI~~~~~P~v 79 (184)
T PF13848_consen 63 TPEELKKFIKKNSFPLV 79 (184)
T ss_dssp SHHHHHHHHHHHSSTSC
T ss_pred CHHHHHHHHHHhccccc
Confidence 99999999998865443
No 196
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=93.59 E-value=0.093 Score=41.30 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=35.4
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecccc--ccHHHHHhCCCC-cCceEEE
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKFSVG-HYPMLLW 134 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d--~~~~l~~~f~I~-~yPTl~~ 134 (521)
++.|..+||++|.+....+++. .+.+..+|++.+ ...++-+..+.. ++|++++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-------------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i 57 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-------------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI 57 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-------------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence 5778899999999988777652 144555666432 123344456777 8998865
No 197
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=93.51 E-value=0.23 Score=38.92 Aligned_cols=53 Identities=19% Similarity=0.210 Sum_probs=36.0
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccc-cHHHHHhCCCCcCceEEE
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI-NTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~-~~~l~~~f~I~~yPTl~~ 134 (521)
++.|..+|||.|.+..-.+++. .+.+..+|.+.+. ...+-+..|...+|.+++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-------------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi 56 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-------------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE
Confidence 6889999999999987666642 1445556654333 233444568899999865
No 198
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=93.02 E-value=1.1 Score=38.14 Aligned_cols=96 Identities=15% Similarity=0.248 Sum_probs=62.6
Q ss_pred cccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceE
Q 009987 53 ATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPML 132 (521)
Q Consensus 53 ~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl 132 (521)
.++++..+... +.++|-|+..-=+ ....+|.++|+.+++ ...|+... +..+..++++ .|++
T Consensus 8 ~~~l~~f~~~~--~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-------d~~F~~~~-----~~~~~~~~~~--~~~i 68 (104)
T cd03069 8 EAEFEKFLSDD--DASVVGFFEDEDS---KLLSEFLKAADTLRE-------SFRFAHTS-----DKQLLEKYGY--GEGV 68 (104)
T ss_pred HHHHHHHhccC--CcEEEEEEcCCCc---hHHHHHHHHHHhhhh-------cCEEEEEC-----hHHHHHhcCC--CCce
Confidence 45566666543 5567777766433 466788999999863 36676544 3567888998 7888
Q ss_pred EEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHh
Q 009987 133 LWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (521)
Q Consensus 133 ~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~ 173 (521)
.+|++..+... .. +....|.|..+.+.|.+||..+
T Consensus 69 vl~~p~~~~~k-~d-----e~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 69 VLFRPPRLSNK-FE-----DSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred EEEechhhhcc-cC-----cccccccCcCCHHHHHHHHHhh
Confidence 88865321110 00 1223578888899999999764
No 199
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=92.67 E-value=0.71 Score=42.42 Aligned_cols=63 Identities=13% Similarity=0.284 Sum_probs=46.2
Q ss_pred HhcCCCCeEEEEEe-cCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc-------------------cccHH
Q 009987 60 LRDTPATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL-------------------KINTN 119 (521)
Q Consensus 60 l~~~~~~~vlV~Fy-A~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~-------------------d~~~~ 119 (521)
+.+.+++++++.|| ..++|-|-..+-.|++...++++.+ +.++.|..+. |.+..
T Consensus 25 Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~------a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~ 98 (157)
T COG1225 25 LSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG------AVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGE 98 (157)
T ss_pred hHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC------CEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHH
Confidence 45556678999999 6899999999999999999997543 4555555432 45666
Q ss_pred HHHhCCCCc
Q 009987 120 LCDKFSVGH 128 (521)
Q Consensus 120 l~~~f~I~~ 128 (521)
+++.|||-.
T Consensus 99 v~~~ygv~~ 107 (157)
T COG1225 99 VAEAYGVWG 107 (157)
T ss_pred HHHHhCccc
Confidence 777777743
No 200
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=92.62 E-value=0.16 Score=39.94 Aligned_cols=53 Identities=9% Similarity=0.185 Sum_probs=37.1
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecccc--ccHHHHHhCCCCcCceEEE
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d--~~~~l~~~f~I~~yPTl~~ 134 (521)
++.|..+||++|++..-.+++. .+.+..+|+..+ ...++.+..+-..+|++++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-------------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-------------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-------------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 6789999999999988777752 145556676432 1234556667788999966
No 201
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=92.61 E-value=0.47 Score=46.34 Aligned_cols=54 Identities=15% Similarity=0.195 Sum_probs=43.3
Q ss_pred cccCcceecCcccHHHHHh-cCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCC
Q 009987 43 VEVDHAVELNATNFDAVLR-DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNG 96 (521)
Q Consensus 43 ~~~~~v~~L~~~~f~~~l~-~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~ 96 (521)
.++.+|+.+++.+...++. ...+.|.+|+|.+-.||+=+.-.+.++++++++.+
T Consensus 79 APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d 133 (237)
T PF00837_consen 79 APNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD 133 (237)
T ss_pred CCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh
Confidence 6677899999887444332 22358999999999999999999999999999864
No 202
>PRK10638 glutaredoxin 3; Provisional
Probab=91.80 E-value=0.46 Score=38.45 Aligned_cols=53 Identities=11% Similarity=0.217 Sum_probs=35.7
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccc--cHHHHHhCCCCcCceEEE
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI--NTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~--~~~l~~~f~I~~yPTl~~ 134 (521)
++.|..+||++|++..-.+++.. +.+..+|++.+. ..++.+..+...+|++++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~g-------------i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKG-------------VSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-------------CCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 56788899999999887777531 344456664321 234556668889999865
No 203
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=91.55 E-value=0.36 Score=44.21 Aligned_cols=59 Identities=12% Similarity=0.127 Sum_probs=40.5
Q ss_pred CeEEEEEe-cCCChhHhhh-hHHHHHHHHHhCCCCCCCCCeE-EEEEeeccc-cccHHHHHhCCCC-cCc
Q 009987 66 TYAVVEFF-ANWCPACRNY-KPQYEKVARLFNGPNAAHPGII-LMTRVDCAL-KINTNLCDKFSVG-HYP 130 (521)
Q Consensus 66 ~~vlV~Fy-A~WCg~C~~~-~P~~~~lA~~~~~~~~~~~~~v-~~~~VDc~~-d~~~~l~~~f~I~-~yP 130 (521)
+++++.|| +.||+.|... .+.|.+.+.++.+.+ + .++.|.++. ......++++++. .+|
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g------~~~V~~iS~D~~~~~~~~~~~~~~~~~f~ 93 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG------VDEVICVSVNDPFVMKAWGKALGAKDKIR 93 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC------CCEEEEEECCCHHHHHHHHHhhCCCCcEE
Confidence 44555555 8999999999 999999999997533 3 355666533 2345577788772 444
No 204
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=91.04 E-value=3.3 Score=34.83 Aligned_cols=95 Identities=11% Similarity=0.197 Sum_probs=62.3
Q ss_pred eec-CcccHHHHHh-cCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCC
Q 009987 49 VEL-NATNFDAVLR-DTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSV 126 (521)
Q Consensus 49 ~~L-~~~~f~~~l~-~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I 126 (521)
..+ +.++++..+. .. ..++|-|+..-=+ ....+|.++|+.++. ...|+... +.++...+++
T Consensus 3 ~~i~~~~~~e~~~~~~~--~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-------d~~F~~~~-----~~~~~~~~~~ 65 (102)
T cd03066 3 EIINSERELQAFENIED--DIKLIGYFKSEDS---EHYKAFEEAAEEFHP-------YIKFFATF-----DSKVAKKLGL 65 (102)
T ss_pred eEcCCHHHHHHHhcccC--CeEEEEEECCCCC---HHHHHHHHHHHhhhc-------CCEEEEEC-----cHHHHHHcCC
Confidence 344 4456777776 43 4566777766433 356688999999863 35665544 3567788877
Q ss_pred CcCceEEEecCCcccCCCCCCCccchhhhhc-cccCCHHHHHHHHHHh
Q 009987 127 GHYPMLLWGSPSKFVAGSWEPNQEKKEIRAL-EDWQTADGLLTWINKQ 173 (521)
Q Consensus 127 ~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~-~G~~~~~~L~~~i~~~ 173 (521)
. .|++.++++. . +....| .|..+.+.|.+||..+
T Consensus 66 ~-~~~i~l~~~~--~----------e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 66 K-MNEVDFYEPF--M----------EEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred C-CCcEEEeCCC--C----------CCCcccCCCCCCHHHHHHHHHHh
Confidence 5 7989888652 1 112346 7778999999999653
No 205
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=90.43 E-value=0.49 Score=39.10 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=33.5
Q ss_pred EEEEec-----CCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecccc--ccHHHHHhCCCCcCceEEE
Q 009987 69 VVEFFA-----NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 69 lV~FyA-----~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d--~~~~l~~~f~I~~yPTl~~ 134 (521)
+|.|-. |||++|++....+++.. +.+..+|...+ ....+.+..|-+.+|++++
T Consensus 10 vvvf~k~~~~~~~Cp~C~~ak~~L~~~~-------------i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi 69 (90)
T cd03028 10 VVLFMKGTPEEPRCGFSRKVVQILNQLG-------------VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV 69 (90)
T ss_pred EEEEEcCCCCCCCCcHHHHHHHHHHHcC-------------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 455544 79999999877776542 34455555322 1234455568889999855
No 206
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=90.20 E-value=0.52 Score=39.66 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=30.7
Q ss_pred CCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecccc--ccHHHHHhCCCCcCceEEE
Q 009987 75 NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 75 ~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d--~~~~l~~~f~I~~yPTl~~ 134 (521)
||||+|++....+++.. +.+..+|...+ ....+.+..|-..+|.+++
T Consensus 25 ~~Cp~C~~ak~lL~~~~-------------i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 25 PQCGFSARAVQILKACG-------------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred CCCchHHHHHHHHHHcC-------------CCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 89999999877776531 34455665321 1234455567789999976
No 207
>PRK10824 glutaredoxin-4; Provisional
Probab=90.16 E-value=0.7 Score=40.28 Aligned_cols=69 Identities=13% Similarity=0.189 Sum_probs=38.1
Q ss_pred HHHHHhcCCCCeEEEEEec-----CCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecccc--ccHHHHHhCCCCc
Q 009987 56 FDAVLRDTPATYAVVEFFA-----NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKFSVGH 128 (521)
Q Consensus 56 f~~~l~~~~~~~vlV~FyA-----~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d--~~~~l~~~f~I~~ 128 (521)
.++.|.++ + +|.|-. ||||+|++..-.+.++.. .+..+|...+ ....+-+.-|-+.
T Consensus 8 v~~~I~~~---~-Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i-------------~~~~idi~~d~~~~~~l~~~sg~~T 70 (115)
T PRK10824 8 IQRQIAEN---P-ILLYMKGSPKLPSCGFSAQAVQALSACGE-------------RFAYVDILQNPDIRAELPKYANWPT 70 (115)
T ss_pred HHHHHhcC---C-EEEEECCCCCCCCCchHHHHHHHHHHcCC-------------CceEEEecCCHHHHHHHHHHhCCCC
Confidence 44556653 2 455665 599999998877776532 2223444221 1122333346677
Q ss_pred CceEEEecCCcccCC
Q 009987 129 YPMLLWGSPSKFVAG 143 (521)
Q Consensus 129 yPTl~~f~~g~~~~~ 143 (521)
+|.+++ +|++.+|
T Consensus 71 VPQIFI--~G~~IGG 83 (115)
T PRK10824 71 FPQLWV--DGELVGG 83 (115)
T ss_pred CCeEEE--CCEEEcC
Confidence 787766 4544443
No 208
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=90.09 E-value=1.6 Score=41.47 Aligned_cols=107 Identities=11% Similarity=0.223 Sum_probs=73.3
Q ss_pred CcceecCcccHHHHH-hcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhC
Q 009987 46 DHAVELNATNFDAVL-RDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (521)
Q Consensus 46 ~~v~~L~~~~f~~~l-~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f 124 (521)
..|..+++..|..-+ ..+.+-||+|..|..--+.|.-+.-.++.||..|. .++|+++-.+. -.-.|
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp--------~iKFVki~at~-----cIpNY 157 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP--------QIKFVKIPATT-----CIPNY 157 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC--------cceEEeccccc-----ccCCC
Confidence 458888888887755 44456789999999999999999999999999984 46777665321 11235
Q ss_pred CCCcCceEEEecCCcccCCCCCCCccchhhhhcccc-CCHHHHHHHHHH
Q 009987 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDW-QTADGLLTWINK 172 (521)
Q Consensus 125 ~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~-~~~~~L~~~i~~ 172 (521)
-=...||+++|..|.+.... -.+..+.|. .+.+++..++-+
T Consensus 158 Pe~nlPTl~VY~~G~lk~q~-------igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 158 PESNLPTLLVYHHGALKKQM-------IGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred cccCCCeEEEeecchHHhhe-------ehhhhhcCCcCCHHHHHHHHHh
Confidence 55678999999988665321 111233333 456776666644
No 209
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=89.75 E-value=0.97 Score=36.57 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=35.5
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccc---cHHHHHhC-CCCcCceEEE
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI---NTNLCDKF-SVGHYPMLLW 134 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~---~~~l~~~f-~I~~yPTl~~ 134 (521)
++.|.-++||+|.+....+.+. .+.+..+|.+.+. ..+..++- |.+.+|+|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-------------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-------------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-------------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 5778899999999987766632 2445555554332 12334444 7899999987
No 210
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=89.71 E-value=0.48 Score=43.69 Aligned_cols=31 Identities=32% Similarity=0.683 Sum_probs=27.7
Q ss_pred CCeEEEEEecCCChhHhhhhHHHHHHHHHhC
Q 009987 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFN 95 (521)
Q Consensus 65 ~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~ 95 (521)
+++.|++|+...||+|+.+.+.+.++.+++.
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~ 45 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAWVKKLP 45 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHHHHhCC
Confidence 3678999999999999999999999888863
No 211
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=89.47 E-value=2 Score=47.69 Aligned_cols=97 Identities=7% Similarity=0.036 Sum_probs=70.3
Q ss_pred HHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEEe
Q 009987 56 FDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWG 135 (521)
Q Consensus 56 f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~f 135 (521)
++..+.+-.+.+.|+.|+.+-|..|..+...+++++.. . ++|.+...|. .++.++..+|+|...|++.++
T Consensus 357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~-s-------~~i~~~~~~~--~~~~~~~~~~~v~~~P~~~i~ 426 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASL-S-------EKLNSEAVNR--GEEPESETLPKITKLPTVALL 426 (555)
T ss_pred HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhc-C-------CcEEEEEecc--ccchhhHhhcCCCcCCEEEEE
Confidence 55556655556678889999999999998888888854 2 4588877886 457889999999999999997
Q ss_pred c-CCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhc
Q 009987 136 S-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (521)
Q Consensus 136 ~-~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l 174 (521)
. +|... . .+|.|-..-.++..||...+
T Consensus 427 ~~~~~~~-----------~-i~f~g~P~G~Ef~s~i~~i~ 454 (555)
T TIGR03143 427 DDDGNYT-----------G-LKFHGVPSGHELNSFILALY 454 (555)
T ss_pred eCCCccc-----------c-eEEEecCccHhHHHHHHHHH
Confidence 4 43211 1 35667666677777776654
No 212
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=89.33 E-value=1.2 Score=38.00 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=44.3
Q ss_pred cHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHH----HhCCCCcCc
Q 009987 55 NFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLC----DKFSVGHYP 130 (521)
Q Consensus 55 ~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~----~~f~I~~yP 130 (521)
..+.++.++ + +|.|.-+||+.|....-.|.+ +. ....++.+|-. +...++- +--+-+.+|
T Consensus 6 ~v~~~i~~~---~-VVifSKs~C~~c~~~k~ll~~----~~-------v~~~vvELD~~-~~g~eiq~~l~~~tg~~tvP 69 (104)
T KOG1752|consen 6 KVRKMISEN---P-VVIFSKSSCPYCHRAKELLSD----LG-------VNPKVVELDED-EDGSEIQKALKKLTGQRTVP 69 (104)
T ss_pred HHHHHhhcC---C-EEEEECCcCchHHHHHHHHHh----CC-------CCCEEEEccCC-CCcHHHHHHHHHhcCCCCCC
Confidence 345566654 3 788999999999997666665 32 23567777753 2223333 333456889
Q ss_pred eEEEecCCcccCC
Q 009987 131 MLLWGSPSKFVAG 143 (521)
Q Consensus 131 Tl~~f~~g~~~~~ 143 (521)
.+++ +|++.+|
T Consensus 70 ~vFI--~Gk~iGG 80 (104)
T KOG1752|consen 70 NVFI--GGKFIGG 80 (104)
T ss_pred EEEE--CCEEEcC
Confidence 8877 4555543
No 213
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.12 E-value=6.3 Score=38.51 Aligned_cols=46 Identities=33% Similarity=0.455 Sum_probs=31.0
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHH
Q 009987 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARL 93 (521)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~ 93 (521)
+..++.+.-.-.+.+...++.++.|+..-||+|+...|.+++....
T Consensus 67 ~~~~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~ 112 (244)
T COG1651 67 VLYLTPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYID 112 (244)
T ss_pred eeeecCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhh
Confidence 4455544444444444446789999999999998888887774444
No 214
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=87.67 E-value=1.8 Score=40.55 Aligned_cols=25 Identities=20% Similarity=0.597 Sum_probs=20.8
Q ss_pred EEecCCChhHhhhhHHHHHHHHHhC
Q 009987 71 EFFANWCPACRNYKPQYEKVARLFN 95 (521)
Q Consensus 71 ~FyA~WCg~C~~~~P~~~~lA~~~~ 95 (521)
.|..|.|+.|-.+.|.+.++..++.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~ 26 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYG 26 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcC
Confidence 5889999999999999999999986
No 215
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=86.55 E-value=3.9 Score=36.58 Aligned_cols=74 Identities=11% Similarity=0.172 Sum_probs=48.5
Q ss_pred EEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCC----cCceEEEecCCcccCC
Q 009987 68 AVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG----HYPMLLWGSPSKFVAG 143 (521)
Q Consensus 68 vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~----~yPTl~~f~~g~~~~~ 143 (521)
-++.|++|.||-|......++ ++- +.+-.+.. ++-..+-+++||. +-=|..+ +|
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk--~~G-----------f~Vk~~~~--~d~~alK~~~gIp~e~~SCHT~VI--~G----- 84 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMK--ANG-----------FEVKVVET--DDFLALKRRLGIPYEMQSCHTAVI--NG----- 84 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHH--hCC-----------cEEEEeec--CcHHHHHHhcCCChhhccccEEEE--cC-----
Confidence 378899999999998776665 222 34444443 2355677778874 3345554 22
Q ss_pred CCCCCccchhhhhccccCCHHHHHHHHHHhc
Q 009987 144 SWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (521)
Q Consensus 144 ~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l 174 (521)
..++|...+++|..++++.-
T Consensus 85 -----------y~vEGHVPa~aI~~ll~~~p 104 (149)
T COG3019 85 -----------YYVEGHVPAEAIARLLAEKP 104 (149)
T ss_pred -----------EEEeccCCHHHHHHHHhCCC
Confidence 33578889999999987653
No 216
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=85.53 E-value=0.87 Score=43.73 Aligned_cols=30 Identities=30% Similarity=0.783 Sum_probs=25.2
Q ss_pred CeEEEEEecCCChhHhhhhHHH---HHHHHHhC
Q 009987 66 TYAVVEFFANWCPACRNYKPQY---EKVARLFN 95 (521)
Q Consensus 66 ~~vlV~FyA~WCg~C~~~~P~~---~~lA~~~~ 95 (521)
++-+|+|+.--||||.++.|.+ +.+.+.+.
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~ 70 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLP 70 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccccchHHHHHhCC
Confidence 4569999999999999999976 67777764
No 217
>PTZ00062 glutaredoxin; Provisional
Probab=84.01 E-value=3.9 Score=39.33 Aligned_cols=53 Identities=11% Similarity=0.091 Sum_probs=32.4
Q ss_pred EEEEec-----CCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecccccc--HHHHHhCCCCcCceEEE
Q 009987 69 VVEFFA-----NWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKIN--TNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 69 lV~FyA-----~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~--~~l~~~f~I~~yPTl~~ 134 (521)
+|.|-- |+||.|++..-.+++. .+.+..+|...+.. ..+-+.-|-..+|.+++
T Consensus 115 Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-------------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 115 ILLFMKGSKTFPFCRFSNAVVNMLNSS-------------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred EEEEEccCCCCCCChhHHHHHHHHHHc-------------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence 455643 7999999987777643 14455667643221 22333446678888876
No 218
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=83.73 E-value=9.4 Score=32.58 Aligned_cols=99 Identities=14% Similarity=0.174 Sum_probs=60.2
Q ss_pred CcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCce
Q 009987 52 NATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPM 131 (521)
Q Consensus 52 ~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPT 131 (521)
+.++++..+.+.. ..++|=|+..-=+ .....|.++|..+++ ...|+... +.++..++++. .|.
T Consensus 7 s~~ele~f~~~~~-~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd-------d~~F~~t~-----~~~~~~~~~~~-~~~ 69 (107)
T cd03068 7 TLKQVQEFLRDGD-DVIIIGVFSGEED---PAYQLYQDAANSLRE-------DYKFHHTF-----DSEIFKSLKVS-PGQ 69 (107)
T ss_pred CHHHHHHHHhcCC-CEEEEEEECCCCC---HHHHHHHHHHHhccc-------CCEEEEEC-----hHHHHHhcCCC-CCc
Confidence 3455666665531 3456666665433 456788899999863 36675544 35677888886 577
Q ss_pred EEEecCCcccCCCCCCCccchhhhhcccc-CCHHH-HHHHHHHh
Q 009987 132 LLWGSPSKFVAGSWEPNQEKKEIRALEDW-QTADG-LLTWINKQ 173 (521)
Q Consensus 132 l~~f~~g~~~~~~~~~~~~~~~v~~~~G~-~~~~~-L~~~i~~~ 173 (521)
+.+|+|..+... -.+....|.|. .+.++ |.+||.++
T Consensus 70 vvl~rp~~~~~k------~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 70 LVVFQPEKFQSK------YEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred eEEECcHHHhhh------cCcceeeeeccccchHHHHHHHHhcC
Confidence 778766544311 00222456666 46655 99999753
No 219
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=83.00 E-value=2.1 Score=45.71 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=35.0
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecccccc-HHHHHh---------CCCCcCceEEE
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKIN-TNLCDK---------FSVGHYPMLLW 134 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~-~~l~~~---------f~I~~yPTl~~ 134 (521)
++.|..||||+|++..-.+++. +|.+..+|++.+.. .++..+ .|.+.+|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-------------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-------------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6889999999999987666652 25556677643221 122222 47789999977
No 220
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=79.18 E-value=4.3 Score=37.88 Aligned_cols=71 Identities=10% Similarity=0.212 Sum_probs=43.9
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCC-hhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccc-cHHHHHhC
Q 009987 48 AVELNATNFDAVLRDTPATYAVVEFFANWC-PACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKI-NTNLCDKF 124 (521)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vlV~FyA~WC-g~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~-~~~l~~~f 124 (521)
.+.-++..|. ..+.+++++||.|.=+-| ..|-.....+.++.+.+.+.+ ..+.++.|.++-+. .++..++|
T Consensus 37 L~d~~G~~~~--~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~----~~v~~v~ISvDP~~DTp~~L~~Y 109 (174)
T PF02630_consen 37 LTDQDGKTVT--LDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEG----KDVQFVFISVDPERDTPEVLKKY 109 (174)
T ss_dssp EEETTSSEEE--GGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTT----TTEEEEEEESSTTTC-HHHHHHH
T ss_pred EEcCCCCEec--HHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhcc----CceEEEEEEeCCCCCCHHHHHHH
Confidence 3444444444 233456999999999999 579888888888888776432 24666666554322 34555554
No 221
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=77.60 E-value=33 Score=34.11 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=29.8
Q ss_pred cCCCCeEEEEEecCCChh-HhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeec
Q 009987 62 DTPATYAVVEFFANWCPA-CRNYKPQYEKVARLFNGPNAAHPGIILMTRVDC 112 (521)
Q Consensus 62 ~~~~~~vlV~FyA~WCg~-C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc 112 (521)
+..++|+|++|-=+.||. |-.+...+.++.+++....- -+..-.|+.+|-
T Consensus 136 df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~-~~~~PlFIsvDP 186 (280)
T KOG2792|consen 136 DFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPG-LPPVPLFISVDP 186 (280)
T ss_pred ccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCC-CCccceEEEeCc
Confidence 334799999999999975 66655444444455543221 112235677775
No 222
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=74.90 E-value=5.8 Score=35.06 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=15.8
Q ss_pred CChHHHHHHHHHHhCCC
Q 009987 432 WDQDEVFKFLTNYYGNT 448 (521)
Q Consensus 432 w~e~~V~~fL~~~Y~~~ 448 (521)
.+++||.+|+++.||.-
T Consensus 74 ~Sd~eI~~~~v~RYG~~ 90 (126)
T TIGR03147 74 KSNQQIIDFMTARFGDF 90 (126)
T ss_pred CCHHHHHHHHHHhcCCe
Confidence 78899999999999986
No 223
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=72.39 E-value=8.3 Score=34.07 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=15.7
Q ss_pred CChHHHHHHHHHHhCCC
Q 009987 432 WDQDEVFKFLTNYYGNT 448 (521)
Q Consensus 432 w~e~~V~~fL~~~Y~~~ 448 (521)
.+++||..||++.||.-
T Consensus 74 ~sd~eI~~~~v~RYG~~ 90 (126)
T PRK10144 74 KSEVEIIGWMTERYGDF 90 (126)
T ss_pred CCHHHHHHHHHHhcCCe
Confidence 78899999999999986
No 224
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=72.20 E-value=2.8 Score=38.22 Aligned_cols=17 Identities=18% Similarity=0.552 Sum_probs=14.3
Q ss_pred CChHHHHHHHHHHhCCC
Q 009987 432 WDQDEVFKFLTNYYGNT 448 (521)
Q Consensus 432 w~e~~V~~fL~~~Y~~~ 448 (521)
.++++|.+|+++.||..
T Consensus 74 ~s~~eI~~~~v~rYG~~ 90 (148)
T PF03918_consen 74 KSDEEIIDYFVERYGEF 90 (148)
T ss_dssp --HHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHhcCcc
Confidence 78899999999999986
No 225
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=69.91 E-value=38 Score=32.56 Aligned_cols=65 Identities=15% Similarity=0.279 Sum_probs=45.1
Q ss_pred CCCeEEEEEecCCCh-hHhhhhHHHHHHHHHhC-CCCCCCCCe--EEEEEeeccccccHHHHHhCCC-CcCceEE
Q 009987 64 PATYAVVEFFANWCP-ACRNYKPQYEKVARLFN-GPNAAHPGI--ILMTRVDCALKINTNLCDKFSV-GHYPMLL 133 (521)
Q Consensus 64 ~~~~vlV~FyA~WCg-~C~~~~P~~~~lA~~~~-~~~~~~~~~--v~~~~VDc~~d~~~~l~~~f~I-~~yPTl~ 133 (521)
++++++|.|.=+.|+ -|-.....+.++.+++. +.+ .. +.++.||-.. +.++..++|.. ...|-+.
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~----~~v~vv~itvDPer-Dtp~~lk~Y~~~~~~~~~~ 135 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEG----DDVQVVFITVDPER-DTPEVLKKYAELNFDPRWI 135 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccC----CCEEEEEEEECCCC-CCHHHHHHHhcccCCCCee
Confidence 568999999888885 59888888888888886 322 33 4555566533 34778888888 5555443
No 226
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=67.19 E-value=23 Score=33.62 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=56.1
Q ss_pred CCCeEEEEEe-cCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc--------------------------cc
Q 009987 64 PATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL--------------------------KI 116 (521)
Q Consensus 64 ~~~~vlV~Fy-A~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~--------------------------d~ 116 (521)
.++|+++.|| +..-+-|--+...+.+...+|++.+ +.++.+.++. |.
T Consensus 32 ~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g------~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~ 105 (194)
T COG0450 32 YGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG------VEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADP 105 (194)
T ss_pred cCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC------CEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcC
Confidence 3477666676 6777888888888888888887654 5555555532 34
Q ss_pred cHHHHHhCCCCcCc-------eEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHH
Q 009987 117 NTNLCDKFSVGHYP-------MLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (521)
Q Consensus 117 ~~~l~~~f~I~~yP-------Tl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~ 172 (521)
+.++++.||+-.-. ++++-++|.+.. ..+....=+|+.++++..|+.
T Consensus 106 ~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~---------~~v~~~~iGRn~dEilR~idA 159 (194)
T COG0450 106 KGEIARAYGVLHPEEGLALRGTFIIDPDGVIRH---------ILVNPLTIGRNVDEILRVIDA 159 (194)
T ss_pred chhHHHHcCCcccCCCcceeEEEEECCCCeEEE---------EEEecCCCCcCHHHHHHHHHH
Confidence 56777777765311 222224443221 111122335888888877654
No 227
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=66.77 E-value=8.9 Score=42.99 Aligned_cols=79 Identities=11% Similarity=0.204 Sum_probs=55.0
Q ss_pred ecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHH---HHHHHHhCCCCCCCCCeEEEEEeeccccccHHH------
Q 009987 50 ELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQY---EKVARLFNGPNAAHPGIILMTRVDCALKINTNL------ 120 (521)
Q Consensus 50 ~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~---~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l------ 120 (521)
.-.++.|+..-.. ++|++|..-.+||.-|.-|+.+= .++|+.++ ..++-++||- ++-+++
T Consensus 30 pW~~eAf~~A~~e--dkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN-------~~FV~IKVDR--EERPDvD~~Ym~ 98 (667)
T COG1331 30 PWGEEAFAKAKEE--DKPILLSIGYSTCHWCHVMAHESFEDPEIAAILN-------ENFVPVKVDR--EERPDVDSLYMN 98 (667)
T ss_pred ccCHHHHHHHHHh--CCCEEEEeccccccchHHHhhhcCCCHHHHHHHH-------hCceeeeECh--hhccCHHHHHHH
Confidence 3456778766555 48999999999999999998542 55777776 2466778885 555554
Q ss_pred -HHhCCCC-cCc-eEEEecCCc
Q 009987 121 -CDKFSVG-HYP-MLLWGSPSK 139 (521)
Q Consensus 121 -~~~f~I~-~yP-Tl~~f~~g~ 139 (521)
|+-...+ |.| |+++-|+|+
T Consensus 99 ~~q~~tG~GGWPLtVfLTPd~k 120 (667)
T COG1331 99 ASQAITGQGGWPLTVFLTPDGK 120 (667)
T ss_pred HHHHhccCCCCceeEEECCCCc
Confidence 4444444 789 666667665
No 228
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=66.73 E-value=2.2 Score=29.76 Aligned_cols=18 Identities=39% Similarity=0.427 Sum_probs=11.9
Q ss_pred cceeecHHHHHHHHHHhh
Q 009987 476 NAVVVPVGAALAIALASC 493 (521)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~ 493 (521)
-+|++|++..++++++-+
T Consensus 15 ~~VvVPV~vI~~vl~~~l 32 (40)
T PF08693_consen 15 VGVVVPVGVIIIVLGAFL 32 (40)
T ss_pred EEEEechHHHHHHHHHHh
Confidence 468889887775554433
No 229
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=65.33 E-value=9.6 Score=29.38 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=20.2
Q ss_pred ecHHHHHHH-HHHhhhhhHHHHHH---HHHHhhhhhhhhhhhc
Q 009987 480 VPVGAALAI-ALASCAFGALACYW---RSQQKNRKYKYQLHSL 518 (521)
Q Consensus 480 ~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 518 (521)
.|.+..+.+ ++++..+|+++.++ |.+...|+.++....+
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~l 60 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSRLRLRRRIRRLRKELKKL 60 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544 44445555555554 4455555555555444
No 230
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=60.83 E-value=61 Score=25.08 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=41.1
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEEecCCcccCCCCCCC
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPN 148 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~f~~g~~~~~~~~~~ 148 (521)
+..|+.+.|+.|++.+-.+....-. ..+..+|- ....++ ..-+-..+|++..-..| ++
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~-----------y~~~~~~~--~~~~~~-~~~~~~~vP~l~~~~~~---~~----- 59 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP-----------YEVVEVNP--VSRKEI-KWSSYKKVPILRVESGG---DG----- 59 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc-----------eEEEECCc--hhHHHH-HHhCCCccCEEEECCCC---Cc-----
Confidence 4568889999999987544442211 22333342 112233 33455678998752110 00
Q ss_pred ccchhhhhccccCCHHHHHHHHHHhcc
Q 009987 149 QEKKEIRALEDWQTADGLLTWINKQTS 175 (521)
Q Consensus 149 ~~~~~v~~~~G~~~~~~L~~~i~~~l~ 175 (521)
. . -.....|.+++++++|
T Consensus 60 ---~--~----l~eS~~I~~yL~~~~~ 77 (77)
T cd03040 60 ---Q--Q----LVDSSVIISTLKTYLG 77 (77)
T ss_pred ---c--E----EEcHHHHHHHHHHHcC
Confidence 0 0 1356778888887764
No 231
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=58.92 E-value=19 Score=27.69 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=33.4
Q ss_pred EEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEE
Q 009987 70 VEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 70 V~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~ 134 (521)
+.|+.+||+.|++..-.+++..-. +.+..+|.. +...++.+......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~-----------~e~~~v~~~-~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGIT-----------VELREVELK-NKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCC-----------cEEEEeCCC-CCCHHHHHHCCCCCCCEEEE
Confidence 457789999999876555443211 445566653 23355656666778999965
No 232
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=54.45 E-value=2.3 Score=28.96 Aligned_cols=16 Identities=25% Similarity=0.968 Sum_probs=10.5
Q ss_pred CCCCCCCCCChhhhcc
Q 009987 404 KIIWPPKQLCSSCYRS 419 (521)
Q Consensus 404 k~~~P~~~~Cp~C~~~ 419 (521)
.++|||...||.|+..
T Consensus 19 ~~~~pPr~~Cp~C~s~ 34 (37)
T PF12172_consen 19 RVQFPPRPVCPHCGSD 34 (37)
T ss_dssp -EEES--SEETTTT--
T ss_pred CEecCCCcCCCCcCcc
Confidence 5899999999999743
No 233
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=53.75 E-value=21 Score=27.41 Aligned_cols=11 Identities=9% Similarity=0.042 Sum_probs=4.2
Q ss_pred HHHHHHHHhhh
Q 009987 499 ACYWRSQQKNR 509 (521)
Q Consensus 499 ~~~~~~~~~~~ 509 (521)
-.-++..+++|
T Consensus 45 ~~r~~~~~~~k 55 (68)
T PF06305_consen 45 RLRRRIRRLRK 55 (68)
T ss_pred HHHHHHHHHHH
Confidence 33433333333
No 234
>PF15050 SCIMP: SCIMP protein
Probab=52.45 E-value=21 Score=31.10 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=17.4
Q ss_pred cHHHHHHHHHHhhhhhHHHHH
Q 009987 481 PVGAALAIALASCAFGALACY 501 (521)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~ 501 (521)
=|..||||.+.|.+.|.+.+|
T Consensus 9 WiiLAVaII~vS~~lglIlyC 29 (133)
T PF15050_consen 9 WIILAVAIILVSVVLGLILYC 29 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999987764
No 235
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=51.57 E-value=41 Score=26.36 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=29.0
Q ss_pred EEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEE
Q 009987 69 VVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~ 134 (521)
+..++.++|+.|++..-.+++..-. ..+..++-......++-+..+-..+|++..
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~-----------y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~ 56 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELD-----------VILYPCPKGSPKRDKFLEKGGKVQVPYLVD 56 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCc-----------EEEEECCCChHHHHHHHHhCCCCcccEEEe
Confidence 3456778999999876555543221 223333311111233434445567899864
No 236
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=51.39 E-value=38 Score=30.78 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=33.8
Q ss_pred EEEEecC------CChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecccc--ccHHHHHhCCC----CcCceEEE
Q 009987 69 VVEFFAN------WCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKFSV----GHYPMLLW 134 (521)
Q Consensus 69 lV~FyA~------WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d--~~~~l~~~f~I----~~yPTl~~ 134 (521)
+|.|+.+ +|++|++..-.++.+ .|.+-.+|.+.+ ...++.+..+- ..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-------------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-------------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-------------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4667777 899999988777653 155666776422 12344444454 67888876
No 237
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=50.55 E-value=59 Score=28.05 Aligned_cols=45 Identities=13% Similarity=0.315 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEEecC
Q 009987 82 NYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSP 137 (521)
Q Consensus 82 ~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~f~~ 137 (521)
.+.++.+.+.+...+.+ .. ..|.. ++.+.++|+|+.+||+.+-++
T Consensus 36 ~~~~t~~~~~~l~~~~~----~~---~~v~I----dP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDD----PC---PGVQI----DPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccC----CC---cceeE----ChhHHhhCCceEcCEEEEEcC
Confidence 77888887777765432 11 23332 589999999999999999766
No 238
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=50.40 E-value=15 Score=25.29 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=9.4
Q ss_pred HHHHhhhhhHHHHHHHHHH
Q 009987 488 IALASCAFGALACYWRSQQ 506 (521)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~ 506 (521)
+++-...+-.-+||+|+++
T Consensus 16 ~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 16 MAIIIICMFYYACCYKKHR 34 (38)
T ss_pred HHHHHHHHHHHHHHHcccc
Confidence 3333344445567765554
No 239
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=49.48 E-value=23 Score=27.52 Aligned_cols=39 Identities=18% Similarity=0.353 Sum_probs=23.8
Q ss_pred hccCChHHHHHHHHHHhcCCCCCCChhHHHHHHH-Hhhhh
Q 009987 345 NFFVCEECRQHFYQMCSSVTSPFNKTRDFALWLW-STHNQ 383 (521)
Q Consensus 345 ~Ff~C~~C~~hf~~~~~~~~~~~~~~~~~~lWlw-~~HN~ 383 (521)
.-.||.+||.|=.+.+.++...-++--.-+.... +.+|.
T Consensus 14 ~tLPC~~Cr~HA~~ai~kNNiMSs~DiNyIy~FFI~lfNn 53 (70)
T PF04805_consen 14 STLPCPECRIHAKEAIQKNNIMSSNDINYIYFFFISLFNN 53 (70)
T ss_pred hcCCCHHHHHHHHHHHHhcCccccCCccchHHHHHHHHHH
Confidence 3579999999999887765333222223344444 66664
No 240
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=46.21 E-value=37 Score=25.73 Aligned_cols=54 Identities=17% Similarity=0.128 Sum_probs=31.9
Q ss_pred EEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc--cccHHHHHhCCCCcCceEEE
Q 009987 70 VEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL--KINTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 70 V~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~--d~~~~l~~~f~I~~yPTl~~ 134 (521)
..|+.++|+.|++..-.++...-. .....+|... ....++.+...-..+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~-----------~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID-----------VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC-----------ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 357788999999987666554222 2333444321 12234555555667899865
No 241
>PF09049 SNN_transmemb: Stannin transmembrane; InterPro: IPR015135 This region consists of a single highly hydrophobic transmembrane helix that transverses the lipid bilayer at a 20 degree angle with respect to the membrane normal. It contains a conserved cysteine residue (Cys32) that, together with Cys34 found in the stannin unstructured linker domain, constitutes the putative trimethyltin-binding site that resides at the end of the transmembrane domain close to the lipid/solvent interface []. ; PDB: 1ZZA_A.
Probab=46.09 E-value=22 Score=22.96 Aligned_cols=14 Identities=50% Similarity=0.850 Sum_probs=7.8
Q ss_pred HHHHHhhhhhHHHH
Q 009987 487 AIALASCAFGALAC 500 (521)
Q Consensus 487 ~~~~~~~~~~~~~~ 500 (521)
.|++|-.+.|+|.|
T Consensus 17 viliavaalg~lic 30 (33)
T PF09049_consen 17 VILIAVAALGALIC 30 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhhe
Confidence 35555555566655
No 242
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.55 E-value=34 Score=33.40 Aligned_cols=42 Identities=14% Similarity=0.175 Sum_probs=32.6
Q ss_pred HHHHHhCCCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhccc
Q 009987 118 TNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (521)
Q Consensus 118 ~~l~~~f~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~~ 176 (521)
...+++.||+++||++| +++ ..+.|..+.+.+..-|.+.++.
T Consensus 174 ~~~A~e~gI~gVP~fv~--d~~---------------~~V~Gaq~~~v~~~al~~~~~~ 215 (225)
T COG2761 174 EAAAQEMGIRGVPTFVF--DGK---------------YAVSGAQPYDVLEDALRQLLAE 215 (225)
T ss_pred HHHHHHCCCccCceEEE--cCc---------------EeecCCCCHHHHHHHHHHHHhc
Confidence 45688999999999998 322 2357888999999988887764
No 243
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=43.79 E-value=38 Score=24.71 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=31.2
Q ss_pred EEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEE
Q 009987 71 EFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 71 ~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~ 134 (521)
.|+.++|+.|++..-.++...-. +....++-..+....+-...+-..+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~-----------~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP-----------YELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC-----------cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 57789999999876666554222 333444432211223445566778898875
No 244
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=43.34 E-value=33 Score=30.99 Aligned_cols=30 Identities=13% Similarity=-0.014 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhhhhhh
Q 009987 483 GAALAIALASCAFGALACYWRSQQKNRKYKY 513 (521)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (521)
|-+|++++ -.+++.++++++.+.++++|||
T Consensus 23 Wwll~~ll-l~~~~~~~~~~~r~~~~~~yrr 52 (146)
T PF14316_consen 23 WWLLLALL-LLLLILLLWRLWRRWRRNRYRR 52 (146)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHccHHHH
Confidence 44443332 2333355555566666678985
No 245
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=42.22 E-value=34 Score=23.94 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=16.1
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhh
Q 009987 488 IALASCAFGALACYWRSQQKNRK 510 (521)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~ 510 (521)
+.+|.|++-++..| |+-|.|++
T Consensus 17 Vglv~i~iva~~iY-RKw~aRkr 38 (43)
T PF08114_consen 17 VGLVGIGIVALFIY-RKWQARKR 38 (43)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHH
Confidence 57788888777778 77766654
No 246
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=41.49 E-value=21 Score=31.44 Aligned_cols=14 Identities=21% Similarity=0.482 Sum_probs=8.8
Q ss_pred HHHHHHHhhhhhhh
Q 009987 500 CYWRSQQKNRKYKY 513 (521)
Q Consensus 500 ~~~~~~~~~~~~~~ 513 (521)
+||+.++||||=+|
T Consensus 100 lcW~~~~rkK~~kr 113 (129)
T PF15099_consen 100 LCWKPIIRKKKKKR 113 (129)
T ss_pred heehhhhHhHHHHh
Confidence 57887766655443
No 247
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=41.49 E-value=1.6e+02 Score=22.64 Aligned_cols=71 Identities=11% Similarity=0.170 Sum_probs=44.8
Q ss_pred EecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEEecCCcccCCCCCCCccc
Q 009987 72 FFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEK 151 (521)
Q Consensus 72 FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~f~~g~~~~~~~~~~~~~ 151 (521)
++.++|+.|++..=.++ +++ -.+.+..++.. +....+.+...-..+|++. .+|..
T Consensus 2 y~~~~Sp~~~kv~~~l~-----~~~------i~~~~~~v~~~-~~~~~~~~~~p~~~vPvL~--~~g~~----------- 56 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALE-----EKG------IPYELVPVDPE-EKRPEFLKLNPKGKVPVLV--DDGEV----------- 56 (75)
T ss_dssp EEETTSHHHHHHHHHHH-----HHT------EEEEEEEEBTT-STSHHHHHHSTTSBSSEEE--ETTEE-----------
T ss_pred CCcCCChHHHHHHHHHH-----HcC------CeEEEeccCcc-cchhHHHhhcccccceEEE--ECCEE-----------
Confidence 67899999999654333 222 12455556643 3346677777778899997 22321
Q ss_pred hhhhhccccCCHHHHHHHHHHhcc
Q 009987 152 KEIRALEDWQTADGLLTWINKQTS 175 (521)
Q Consensus 152 ~~v~~~~G~~~~~~L~~~i~~~l~ 175 (521)
-.+...|.++|+++.+
T Consensus 57 --------l~dS~~I~~yL~~~~~ 72 (75)
T PF13417_consen 57 --------LTDSAAIIEYLEERYP 72 (75)
T ss_dssp --------EESHHHHHHHHHHHST
T ss_pred --------EeCHHHHHHHHHHHcC
Confidence 1356778888887754
No 248
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=41.43 E-value=95 Score=24.70 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=44.8
Q ss_pred EEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEE
Q 009987 68 AVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 68 vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~ 134 (521)
.|..|-+.--+..++....+.++-+++.+ +...+-.||. .++++++..++|-.+||+.=
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~------~~~~LeVIDv--~~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLG------GPYELEVIDV--LKQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcC------CcEEEEEEEc--ccCHhHHhhCCEEEechhhh
Confidence 45556666667777777778877777643 5578888887 46899999999999999864
No 249
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=40.89 E-value=48 Score=28.49 Aligned_cols=56 Identities=9% Similarity=0.160 Sum_probs=41.5
Q ss_pred eecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecc
Q 009987 49 VELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (521)
Q Consensus 49 ~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~ 113 (521)
..++++.++ +...+++++||.=-|+-||.=. --..+++|.++++.. .+.|.++=|.
T Consensus 7 ~~~~G~~v~--l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~------gl~ILaFPcn 62 (108)
T PF00255_consen 7 KDIDGKPVS--LSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK------GLEILAFPCN 62 (108)
T ss_dssp EBTTSSEEE--GGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG------TEEEEEEEBS
T ss_pred eCCCCCEEC--HHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC------CeEEEeeehH
Confidence 344444443 4566679999999999999888 455888899999743 4888888884
No 250
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=40.30 E-value=22 Score=35.92 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=26.7
Q ss_pred cccceeecHHHHHHHHHHhh-hhhHHHHHHHHHHhhhhhhhhhh
Q 009987 474 STNAVVVPVGAALAIALASC-AFGALACYWRSQQKNRKYKYQLH 516 (521)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 516 (521)
-..+.||-|+.|+|+++.-. ++..+... |.++|+.+|.+.+.
T Consensus 224 l~~G~VVlIslAiALG~v~ll~l~Gii~~-~~~r~~~~~~~~p~ 266 (281)
T PF12768_consen 224 LSRGFVVLISLAIALGTVFLLVLIGIILA-YIRRRRQGYVPAPT 266 (281)
T ss_pred ccceEEEEEehHHHHHHHHHHHHHHHHHH-HHHhhhccCcCCCc
Confidence 34678999999988854433 33333333 77777788876543
No 251
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=39.63 E-value=54 Score=32.16 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=41.7
Q ss_pred HhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecc
Q 009987 60 LRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (521)
Q Consensus 60 l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~ 113 (521)
+.+..+.++||-+-..+|..|..-+..++.|-.++...+. ..|.|..||--
T Consensus 21 m~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~---~~I~f~vVN~~ 71 (238)
T PF04592_consen 21 MLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGL---SNISFMVVNHQ 71 (238)
T ss_pred hhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCC---CceEEEEEcCC
Confidence 4556678889999999999999999999999888875542 46999999953
No 252
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=38.54 E-value=27 Score=29.34 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=16.4
Q ss_pred EEEecCCChhHhhhhHHHHH
Q 009987 70 VEFFANWCPACRNYKPQYEK 89 (521)
Q Consensus 70 V~FyA~WCg~C~~~~P~~~~ 89 (521)
..|+.++|+.|++....+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE 21 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 56889999999998766665
No 253
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=38.43 E-value=56 Score=29.08 Aligned_cols=55 Identities=9% Similarity=0.148 Sum_probs=33.7
Q ss_pred cHHHHHhCCCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHh
Q 009987 117 NTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQ 173 (521)
Q Consensus 117 ~~~l~~~f~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~ 173 (521)
++.+.++|+|+.+|++.+.+++..-.+. .+. .........|..+.+.-++.+.+.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~-~~~-~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGLACLPE-QPC-PESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCCccccc-CCC-CCCCeeEEEecccHHHHHHHHHHh
Confidence 5899999999999999998765311110 000 112234456777766666666543
No 254
>PHA03075 glutaredoxin-like protein; Provisional
Probab=36.97 E-value=49 Score=28.78 Aligned_cols=29 Identities=10% Similarity=0.348 Sum_probs=24.9
Q ss_pred CeEEEEEecCCChhHhhhhHHHHHHHHHh
Q 009987 66 TYAVVEFFANWCPACRNYKPQYEKVARLF 94 (521)
Q Consensus 66 ~~vlV~FyA~WCg~C~~~~P~~~~lA~~~ 94 (521)
+.+++.|.-|.|+-|......++++..+|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 34799999999999999998888777765
No 255
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=35.71 E-value=32 Score=29.21 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=16.1
Q ss_pred EEEecCCChhHhhhhHHHHH
Q 009987 70 VEFFANWCPACRNYKPQYEK 89 (521)
Q Consensus 70 V~FyA~WCg~C~~~~P~~~~ 89 (521)
..|+.|+|+.|++....+++
T Consensus 2 ~iy~~~~C~~crka~~~L~~ 21 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA 21 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 56889999999997766654
No 256
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=35.43 E-value=3.3e+02 Score=24.41 Aligned_cols=93 Identities=10% Similarity=0.112 Sum_probs=58.3
Q ss_pred CCeEEEEEecCCCh----hHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccH----------------HHHHhC
Q 009987 65 ATYAVVEFFANWCP----ACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINT----------------NLCDKF 124 (521)
Q Consensus 65 ~~~vlV~FyA~WCg----~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~----------------~l~~~f 124 (521)
.|+.+|+..++--. .|++..- =+.+.+-++ +.+.+-.-|.+.+++. ...+.+
T Consensus 21 ~K~L~VYLH~~~~~~t~~Fc~~~L~-se~Vi~fl~-------~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~ 92 (136)
T cd02990 21 RKLLAIYLHHDESVLSNVFCSQLLC-AESIVQYLS-------QNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNI 92 (136)
T ss_pred cceEEEEEcCCCCccHHHHHHHHhc-CHHHHHHHH-------cCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhc
Confidence 47888888887753 4444321 023333443 2367777787655433 256678
Q ss_pred CCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhc
Q 009987 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQT 174 (521)
Q Consensus 125 ~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l 174 (521)
+...||.+.+.-... + .-..+.++.|..+.++++.-+.+.+
T Consensus 93 ~~~~fP~~avI~~~~--~-------~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 93 KTDQLPAILIIMGKR--S-------SNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred CcCCCCeEEEEEecC--C-------ceEEEEEEECCCCHHHHHHHHHHHH
Confidence 899999888763211 0 1145667899999999988776654
No 257
>PRK09301 circadian clock protein KaiB; Provisional
Probab=34.97 E-value=1.2e+02 Score=25.86 Aligned_cols=62 Identities=16% Similarity=0.159 Sum_probs=49.9
Q ss_pred CCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEE
Q 009987 65 ATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 65 ~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~ 134 (521)
..++|=.|.|.--+..++....+.++-+.... +...+-.||. -++++++..++|-.+||++=
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~------g~y~LeVIDv--~~qPelAE~~~IvATPTLIK 66 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFK------GVYALKVIDV--LKNPQLAEEDKILATPTLAK 66 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcC------CceEEEEEEc--ccCHhHHhHCCeEEecHHhh
Confidence 35678888899988898888888888776543 4477777887 46899999999999999753
No 258
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=34.94 E-value=1.3e+02 Score=24.93 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=48.5
Q ss_pred CeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEE
Q 009987 66 TYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 66 ~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~ 134 (521)
.++|=.|.|.--+..++....+.++-+.... +...+-.||. .+++++++.++|-.+||++=
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~------g~y~LeVIDv--~~qP~lAE~~~IvATPtLIK 63 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQ------GVYALKVIDV--LKNPQLAEEDKILATPTLSK 63 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcC------CceEEEEEEc--ccCHhHHhHCCEEEecHHhh
Confidence 4567778888888888888888888776543 4577777887 46899999999999999764
No 259
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=34.41 E-value=55 Score=30.18 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=0.0
Q ss_pred cccHHHHHhCCCCcCceEEEecCCcccCCCCCCCccchhhh-hccccCCHHHHHHHHH
Q 009987 115 KINTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIR-ALEDWQTADGLLTWIN 171 (521)
Q Consensus 115 d~~~~l~~~f~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~-~~~G~~~~~~L~~~i~ 171 (521)
.++...+.++||.|+||+++ +| . .+.|....+.|.+.|.
T Consensus 154 ~~~~~~a~~~gv~GvP~~vv--~g----------------~~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 154 EEDTAEARQLGVFGVPTFVV--NG----------------KYRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHHHHHHTTCSSSSEEEE--TT----------------TEEEESCSSHHHHHHHH-
T ss_pred HHHHHHHHHcCCcccCEEEE--CC----------------EEEEECCCCHHHHHHHhC
No 260
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=34.10 E-value=2e+02 Score=30.77 Aligned_cols=98 Identities=10% Similarity=0.179 Sum_probs=61.8
Q ss_pred cHHHHHhcCC-CCeEEEEEecCCChhHhhhh-HHHHH-H-HHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCc
Q 009987 55 NFDAVLRDTP-ATYAVVEFFANWCPACRNYK-PQYEK-V-ARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYP 130 (521)
Q Consensus 55 ~f~~~l~~~~-~~~vlV~FyA~WCg~C~~~~-P~~~~-l-A~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yP 130 (521)
+.-..|...+ ++.++|.|-+.---..+.|. -.|.. . ++.+. ..+..++|+........+..-|-+-.+|
T Consensus 7 nipeAIa~aK~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls-------~~fVaIkiqags~aa~qFs~IYp~v~vP 79 (506)
T KOG2507|consen 7 NIPEAIAEAKGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLS-------KYFVAIKIQAGSVAATQFSAIYPYVSVP 79 (506)
T ss_pred chHHHHHHhhcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhh-------cceEEEEeccCchhhhhhhhhccccccc
Confidence 3444443332 35578888887766666665 23322 2 22221 2356667776555566788888999999
Q ss_pred eEEEec-CCcccCCCCCCCccchhhhhccccCCHHHHHHHHHH
Q 009987 131 MLLWGS-PSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINK 172 (521)
Q Consensus 131 Tl~~f~-~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~ 172 (521)
.++++. .| ..+..+.|..++++|..-|++
T Consensus 80 s~ffIg~sG-------------tpLevitg~v~adeL~~~i~K 109 (506)
T KOG2507|consen 80 SIFFIGFSG-------------TPLEVITGFVTADELASSIEK 109 (506)
T ss_pred ceeeecCCC-------------ceeEEeeccccHHHHHHHHHH
Confidence 998864 33 345667788889998876655
No 261
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=33.56 E-value=59 Score=24.78 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=32.1
Q ss_pred EEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecccc--ccHHHHHhCCCCcCceEEE
Q 009987 70 VEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALK--INTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 70 V~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d--~~~~l~~~f~I~~yPTl~~ 134 (521)
..|+.+.|+.|++..-.++...-. +....+|.... ...++.+......+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~-----------~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE-----------LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC-----------CEEEEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 457899999999766555543222 33444553211 2355555556668899964
No 262
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=33.47 E-value=41 Score=31.45 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=26.7
Q ss_pred ccHHHHHhCCCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHH
Q 009987 116 INTNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWI 170 (521)
Q Consensus 116 ~~~~l~~~f~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i 170 (521)
++...+.+.||.|+||+++ +|+ ..+.|..+.+.+.+.|
T Consensus 163 ~~~~~a~~~gv~G~Pt~vv--~g~---------------~~~~G~~~~~~~~~~i 200 (201)
T cd03024 163 ADEARARQLGISGVPFFVF--NGK---------------YAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHHHCCCCcCCEEEE--CCe---------------EeecCCCCHHHHHHHh
Confidence 3456788899999999988 221 1246777777777655
No 263
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=30.34 E-value=71 Score=24.18 Aligned_cols=52 Identities=12% Similarity=0.043 Sum_probs=30.9
Q ss_pred EEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEE
Q 009987 70 VEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLL 133 (521)
Q Consensus 70 V~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~ 133 (521)
..|+.++|+.|++..-.++...-. .....+|.. ....++........+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~-----------~~~~~v~~~-~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS-----------VEIIDVDPD-NPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc-----------cEEEEcCCC-CCCHHHHhhCCCCCCCEEE
Confidence 467889999999976555443222 233345542 2234455555566789775
No 264
>PF03789 ELK: ELK domain ; InterPro: IPR005539 This domain is required for the nuclear localisation of these proteins []. All of these proteins are members of the Tale/Knox homeodomain family, a subfamily, containing homeobox IPR001356 from INTERPRO.; GO: 0003677 DNA binding, 0005634 nucleus
Probab=29.96 E-value=28 Score=21.05 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=14.3
Q ss_pred HHHhhhhhhhhhhhccC
Q 009987 504 SQQKNRKYKYQLHSLKN 520 (521)
Q Consensus 504 ~~~~~~~~~~~~~~~~~ 520 (521)
+.+++|||.-++.+||.
T Consensus 3 K~~LlrkY~g~i~~Lr~ 19 (22)
T PF03789_consen 3 KHQLLRKYSGYISSLRQ 19 (22)
T ss_pred HHHHHHHHhHhHHHHHH
Confidence 46889999999998873
No 265
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=29.23 E-value=1.9e+02 Score=30.33 Aligned_cols=85 Identities=14% Similarity=0.233 Sum_probs=55.1
Q ss_pred HhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEEecCCc
Q 009987 60 LRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWGSPSK 139 (521)
Q Consensus 60 l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~f~~g~ 139 (521)
+.+-.+...+=-|++-.|..|-..-..+.-++- ++ ++|.-.+||-+ -.++-...-+|+++||+++ +|+
T Consensus 111 ik~i~g~~~FETy~SltC~nCPDVVQALN~msv-lN-------p~I~H~~IdGa--~Fq~Evear~IMaVPtvfl--nGe 178 (520)
T COG3634 111 IKAIDGDFHFETYFSLTCHNCPDVVQALNLMSV-LN-------PRIKHTAIDGA--LFQDEVEARNIMAVPTVFL--NGE 178 (520)
T ss_pred HHhcCCceeEEEEEEeeccCChHHHHHHHHHHh-cC-------CCceeEEecch--hhHhHHHhccceecceEEE--cch
Confidence 344444566777888899999666555554433 22 56899999964 3445556678999999987 221
Q ss_pred ccCCCCCCCccchhhhhccccCCHHHHHHHHH
Q 009987 140 FVAGSWEPNQEKKEIRALEDWQTADGLLTWIN 171 (521)
Q Consensus 140 ~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~ 171 (521)
..-+|.++.++|++-|.
T Consensus 179 ---------------~fg~GRmtleeilaki~ 195 (520)
T COG3634 179 ---------------EFGQGRMTLEEILAKID 195 (520)
T ss_pred ---------------hhcccceeHHHHHHHhc
Confidence 12246677777766553
No 266
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=29.10 E-value=3.4e+02 Score=28.43 Aligned_cols=105 Identities=13% Similarity=0.179 Sum_probs=56.3
Q ss_pred cCcceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhC
Q 009987 45 VDHAVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKF 124 (521)
Q Consensus 45 ~~~v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f 124 (521)
.++|..++...=.+...+-...+.||-|+-+-=+. + -..|+++|+.|. +.|.|+++= ++.++++.
T Consensus 145 edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~--~-yk~FeeAAe~F~-------p~IkFfAtf-----d~~vAk~L 209 (383)
T PF01216_consen 145 EDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSE--H-YKEFEEAAEHFQ-------PYIKFFATF-----DKKVAKKL 209 (383)
T ss_dssp SSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSH--H-HHHHHHHHHHCT-------TTSEEEEE------SHHHHHHH
T ss_pred ccchhhhcChhhhhhhhhcccceeEEEEeCCCCcH--H-HHHHHHHHHhhc-------CceeEEEEe-----cchhhhhc
Confidence 35566665532222222212246788888775322 2 236788999986 457777754 47899999
Q ss_pred CCCcCceEEEecCCcccCCCCCCCccchhhhhccccCCHHHHHHHHHHhccc
Q 009987 125 SVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWINKQTSR 176 (521)
Q Consensus 125 ~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~~~l~~ 176 (521)
++. .=.+-+|.| +.. ..+..-..+.+.++|.+||+++-.+
T Consensus 210 ~lK-~nev~fyep--F~~---------~pi~ip~~p~~e~e~~~fi~~h~rp 249 (383)
T PF01216_consen 210 GLK-LNEVDFYEP--FMD---------EPITIPGKPYTEEELVEFIEEHKRP 249 (383)
T ss_dssp T-S-TT-EEEE-T--TSS---------SEEEESSSS--HHHHHHHHHHT-S-
T ss_pred Ccc-ccceeeecc--ccC---------CCccCCCCCCCHHHHHHHHHHhchh
Confidence 997 557777765 221 1111112346889999999998654
No 267
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=28.88 E-value=68 Score=30.65 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=30.7
Q ss_pred HHHHHhCCCCcCceEEEecCCcccCCCCCCCccchhhhhccc--cCCHHHHHHHHHHhc
Q 009987 118 TNLCDKFSVGHYPMLLWGSPSKFVAGSWEPNQEKKEIRALED--WQTADGLLTWINKQT 174 (521)
Q Consensus 118 ~~l~~~f~I~~yPTl~~f~~g~~~~~~~~~~~~~~~v~~~~G--~~~~~~L~~~i~~~l 174 (521)
..++++.++.||||+.+-.+|+..- .-.| ..+.+.+.+++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~-------------l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYV-------------LGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEe-------------ccCCcccCCcHHHHHHHHHHH
Confidence 5689999999999999977765421 0012 246677888877654
No 268
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=28.84 E-value=1.3e+02 Score=22.67 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=14.2
Q ss_pred EEecCCChhHhhhhHHHHH
Q 009987 71 EFFANWCPACRNYKPQYEK 89 (521)
Q Consensus 71 ~FyA~WCg~C~~~~P~~~~ 89 (521)
.++.++|++|++..-.+..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~ 21 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGL 21 (71)
T ss_pred eEecCCCcHhHHHHHHHHH
Confidence 5678999999987655544
No 269
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=27.46 E-value=54 Score=28.01 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=16.2
Q ss_pred EEEecCCChhHhhhhHHHHH
Q 009987 70 VEFFANWCPACRNYKPQYEK 89 (521)
Q Consensus 70 V~FyA~WCg~C~~~~P~~~~ 89 (521)
..|+.++|+.|++..-.+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE 21 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 46889999999998766665
No 270
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=27.01 E-value=70 Score=29.84 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=21.8
Q ss_pred ccccceeecHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 009987 473 VSTNAVVVPVGAALAIALASCAFGALACYWRSQQKNRKYK 512 (521)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (521)
....+++.+|-.||+++|+ ||++-| -++||||-=.
T Consensus 111 ~~~~g~IaGIvsav~valv----GAvsSy-iaYqkKKlCF 145 (169)
T PF12301_consen 111 EAEAGTIAGIVSAVVVALV----GAVSSY-IAYQKKKLCF 145 (169)
T ss_pred CcccchhhhHHHHHHHHHH----HHHHHH-HHHHhhccce
Confidence 3445666777777777665 455566 5667776444
No 271
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=26.88 E-value=1.5e+02 Score=27.54 Aligned_cols=58 Identities=10% Similarity=0.182 Sum_probs=43.5
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeecc
Q 009987 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCA 113 (521)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~ 113 (521)
+..++++.+. +...+++++||.=-||-||.=..--..+..|.++|+.. .+.+.+.-|.
T Consensus 19 ~~d~~G~~v~--l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~------Gl~ILaFPCN 76 (171)
T KOG1651|consen 19 AKDLDGEYVS--LSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQ------GLEILAFPCN 76 (171)
T ss_pred EecCCCCCcc--HHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhC------CeEEEEeccc
Confidence 5555555444 55666788899889999998885455888899999753 4889999884
No 272
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=26.65 E-value=27 Score=31.69 Aligned_cols=27 Identities=22% Similarity=0.511 Sum_probs=21.9
Q ss_pred cceeecHHHHHHHHHHhhhhhHHHHHH
Q 009987 476 NAVVVPVGAALAIALASCAFGALACYW 502 (521)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (521)
+.+.+-||.+|.++|+-|||||+..|-
T Consensus 8 ~sv~i~igi~Ll~lLl~cgiGcvwhwk 34 (158)
T PF11770_consen 8 TSVAISIGISLLLLLLLCGIGCVWHWK 34 (158)
T ss_pred chHHHHHHHHHHHHHHHHhcceEEEee
Confidence 345577899999999999999987743
No 273
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=26.60 E-value=50 Score=36.74 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=34.8
Q ss_pred eeecHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 009987 478 VVVPVGAALAIALASCAFGALACYWRSQQKNRKYKYQLHSLK 519 (521)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (521)
-.+|.-+.+++..+.+++..+...||.+||+++.|+..-+++
T Consensus 990 ~~~p~~~~~~a~vV~~~~~v~i~i~~~r~kr~~~r~~~~~~~ 1031 (1033)
T KOG4266|consen 990 FLVPTRWIVLAGVVASGVLVLLSIWRIRQKRGRRRRASGSNR 1031 (1033)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhhhhcCCceecCcccc
Confidence 456777778787778888888899999999999998877665
No 274
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=26.33 E-value=67 Score=28.42 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=16.1
Q ss_pred EEEEecCCChhHhhhhHHHHH
Q 009987 69 VVEFFANWCPACRNYKPQYEK 89 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~ 89 (521)
+..|+.++|+.|++..-.+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~ 22 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 456889999999997655554
No 275
>PF15284 PAGK: Phage-encoded virulence factor
Probab=25.87 E-value=70 Score=24.46 Aligned_cols=29 Identities=28% Similarity=0.269 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 009987 482 VGAALAIALASCAFGALACYWRSQQKNRKY 511 (521)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (521)
|-+++.+.|.+.+|.+++.- +.++.+|+.
T Consensus 7 ifL~l~~~LsA~~FSasamA-a~~~~~~~~ 35 (61)
T PF15284_consen 7 IFLALVFILSAAGFSASAMA-ADSSPHRKP 35 (61)
T ss_pred HHHHHHHHHHHhhhhHHHHH-HhhCCCCCC
Confidence 45778889999999999988 888877764
No 276
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=25.41 E-value=62 Score=26.44 Aligned_cols=16 Identities=38% Similarity=0.372 Sum_probs=12.1
Q ss_pred HHHHHHhhhhhhhhhh
Q 009987 501 YWRSQQKNRKYKYQLH 516 (521)
Q Consensus 501 ~~~~~~~~~~~~~~~~ 516 (521)
.||.|+|++|.++..+
T Consensus 20 ~~rpqkK~~k~~~~m~ 35 (84)
T TIGR00739 20 IIRPQRKRRKAHKKLI 35 (84)
T ss_pred eechHHHHHHHHHHHH
Confidence 3489999998886654
No 277
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=25.13 E-value=84 Score=27.12 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=12.9
Q ss_pred HHHHHhhhhhhhh-hhhcc
Q 009987 502 WRSQQKNRKYKYQ-LHSLK 519 (521)
Q Consensus 502 ~~~~~~~~~~~~~-~~~~~ 519 (521)
.|.|||++|..+. +.+||
T Consensus 22 iRPQkKr~K~~~~m~~~Lk 40 (109)
T PRK05886 22 SRRQRKAMQATIDLHESLQ 40 (109)
T ss_pred ccHHHHHHHHHHHHHHhcC
Confidence 3999999988754 44555
No 278
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=24.78 E-value=1.5e+02 Score=27.04 Aligned_cols=16 Identities=13% Similarity=0.573 Sum_probs=13.5
Q ss_pred ChHHHHHHHHHHhCCC
Q 009987 433 DQDEVFKFLTNYYGNT 448 (521)
Q Consensus 433 ~e~~V~~fL~~~Y~~~ 448 (521)
.+.+|..|+...||.-
T Consensus 79 S~~qIid~mVaRYG~F 94 (153)
T COG3088 79 SDQQIIDYMVARYGEF 94 (153)
T ss_pred cHHHHHHHHHHhhcce
Confidence 4689999999999874
No 279
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=24.40 E-value=87 Score=28.84 Aligned_cols=18 Identities=22% Similarity=0.036 Sum_probs=15.3
Q ss_pred cHHHHHhCCCCcCceEEE
Q 009987 117 NTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 117 ~~~l~~~f~I~~yPTl~~ 134 (521)
+...+++.||.|+||+++
T Consensus 156 ~~~~a~~~gi~gvPtfvv 173 (192)
T cd03022 156 NTEEAIARGVFGVPTFVV 173 (192)
T ss_pred HHHHHHHcCCCcCCeEEE
Confidence 456678899999999988
No 280
>PHA02706 hypothetical protein; Provisional
Probab=24.23 E-value=24 Score=25.53 Aligned_cols=30 Identities=17% Similarity=0.088 Sum_probs=21.6
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhh
Q 009987 488 IALASCAFGALACYWRSQQKNRKYKYQLHS 517 (521)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (521)
+.+||+.+--+.+.---+.|||||..+-+.
T Consensus 17 lgi~siiidtvifinayfvkkr~~~~k~~e 46 (58)
T PHA02706 17 LGIASIIIDTVIFINAYFVKKRKCINKKDE 46 (58)
T ss_pred HhhHHHhhheeeeeehhhhhhhhhcccccc
Confidence 567787777666665557999999876544
No 281
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=23.99 E-value=66 Score=25.50 Aligned_cols=18 Identities=17% Similarity=0.388 Sum_probs=15.1
Q ss_pred eeecHHHHHHHHHHhhhh
Q 009987 478 VVVPVGAALAIALASCAF 495 (521)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~ 495 (521)
-++|+.++++++++.|++
T Consensus 5 el~PL~~~vg~a~~~a~~ 22 (73)
T PF06522_consen 5 ELYPLFVIVGVAVGGATF 22 (73)
T ss_pred cccchHHHHHHHHHHHHH
Confidence 468999999998888875
No 282
>smart00575 ZnF_PMZ plant mutator transposase zinc finger.
Probab=23.82 E-value=43 Score=21.25 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=12.1
Q ss_pred CCCcCcccccHHHHHHHHhh
Q 009987 306 KNDTRGFSCGLWVLLHSLSV 325 (521)
Q Consensus 306 ~~~~Rgy~CglW~lfH~ltv 325 (521)
+.+..|+||. |.++|
T Consensus 7 ~~~~~gipC~-----H~i~v 21 (28)
T smart00575 7 KFQLSGIPCR-----HALAA 21 (28)
T ss_pred CcccCCccHH-----HHHHH
Confidence 6678899998 87776
No 283
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=23.16 E-value=89 Score=28.29 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=15.8
Q ss_pred cHHHHHhCCCCcCceEEE
Q 009987 117 NTNLCDKFSVGHYPMLLW 134 (521)
Q Consensus 117 ~~~l~~~f~I~~yPTl~~ 134 (521)
+...+.++||.++||+++
T Consensus 132 ~~~~~~~~gi~gTPt~iI 149 (178)
T cd03019 132 AEKLAKKYKITGVPAFVV 149 (178)
T ss_pred HHHHHHHcCCCCCCeEEE
Confidence 456788999999999988
No 284
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=22.71 E-value=1e+02 Score=26.53 Aligned_cols=28 Identities=32% Similarity=0.375 Sum_probs=11.5
Q ss_pred HHHHH-HHhhhhhHHHHHHHHHHhhhhhhh
Q 009987 485 ALAIA-LASCAFGALACYWRSQQKNRKYKY 513 (521)
Q Consensus 485 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 513 (521)
++|++ |.|.++..++ |.++++.++.+.+
T Consensus 6 il~llLll~l~asl~~-wr~~~rq~k~~~~ 34 (107)
T PF15330_consen 6 ILALLLLLSLAASLLA-WRMKQRQKKAGQY 34 (107)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhhhccccCC
Confidence 34443 4444443333 3244444444443
No 285
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=22.64 E-value=86 Score=26.47 Aligned_cols=45 Identities=18% Similarity=0.425 Sum_probs=30.7
Q ss_pred EecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCC
Q 009987 72 FFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVG 127 (521)
Q Consensus 72 FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~ 127 (521)
||-..||-|....-.+++... .+.+.++.+. .+...++.+.+++.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~---------~~~l~~~~~~--~~~~~~~~~~~~~~ 46 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR---------GGRLRFVDIQ--SEPDQALLASYGIS 46 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC---------CCCEEEEECC--ChhhhhHHHhcCcC
Confidence 789999999998877776511 1357776652 23455667777776
No 286
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=22.58 E-value=94 Score=30.90 Aligned_cols=31 Identities=16% Similarity=0.074 Sum_probs=22.4
Q ss_pred CCCeEEEEEecCCChhHhhhhHHHHHHHHHh
Q 009987 64 PATYAVVEFFANWCPACRNYKPQYEKVARLF 94 (521)
Q Consensus 64 ~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~ 94 (521)
++|+.++..-+.|||.|-..+=.+-.+-..+
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrf 87 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRF 87 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhc
Confidence 4688899999999999988763333333444
No 287
>PF15345 TMEM51: Transmembrane protein 51
Probab=22.57 E-value=1.2e+02 Score=29.55 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=18.7
Q ss_pred ccccccccceeecHHHHHHHHHHhh
Q 009987 469 EDLVVSTNAVVVPVGAALAIALASC 493 (521)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (521)
.+.+.+++-+.|-||+-++++|.|.
T Consensus 52 ~~ksKt~SVAyVLVG~Gv~LLLLSI 76 (233)
T PF15345_consen 52 NLKSKTFSVAYVLVGSGVALLLLSI 76 (233)
T ss_pred cccceeEEEEEehhhHHHHHHHHHH
Confidence 4556677777788899887777776
No 288
>PF14143 YrhC: YrhC-like protein
Probab=22.26 E-value=95 Score=24.70 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=12.7
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhh
Q 009987 491 ASCAFGALACYWRSQQKNRKYKYQLH 516 (521)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (521)
++|+|.+.+++ ..++.++|++++.
T Consensus 46 ~~~~~l~~a~~--f~~rs~~~~~~L~ 69 (72)
T PF14143_consen 46 AICIFLAGAFL--FFRRSKKYQKKLE 69 (72)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHhh
Confidence 33444333333 4566677777764
No 289
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=22.13 E-value=76 Score=27.28 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=16.2
Q ss_pred EEEecCCChhHhhhhHHHHH
Q 009987 70 VEFFANWCPACRNYKPQYEK 89 (521)
Q Consensus 70 V~FyA~WCg~C~~~~P~~~~ 89 (521)
..|+.++|+.|++..-.+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA 21 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 45789999999998766665
No 290
>PF05214 Baculo_p33: Baculovirus P33; InterPro: IPR007879 This family consists of a series of baculoviral 33 kDa early protein homologues.; PDB: 3QZY_B 3P0K_A.
Probab=22.12 E-value=70 Score=31.46 Aligned_cols=43 Identities=28% Similarity=0.649 Sum_probs=27.0
Q ss_pred HHHHHHHHhhcCCC---CCC----HH---HHHHHHHHHHhc---cCChHHHHHHHH
Q 009987 316 LWVLLHSLSVRIDD---GES----QF---TFTAVCDFIHNF---FVCEECRQHFYQ 358 (521)
Q Consensus 316 lW~lfH~ltv~~~~---~~~----~~---~~~~~~~~v~~F---f~C~~C~~hf~~ 358 (521)
.|=..|.|+.-.+| +.. .. .+..|+..+.+. ..|.-||+|+..
T Consensus 108 IWD~IH~l~li~DdmV~nR~~~~~d~v~~~l~n~K~lfYNiF~~L~C~mC~~HYl~ 163 (250)
T PF05214_consen 108 IWDSIHFLCLIIDDMVDNRHKLSYDFVSNQLKNMKWLFYNIFFKLFCPMCRDHYLT 163 (250)
T ss_dssp HHHHHHHHHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHT---SSS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhHhheeCChHHhHHHee
Confidence 59999999986553 111 22 344555555553 399999999964
No 291
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=21.72 E-value=4.7e+02 Score=21.68 Aligned_cols=82 Identities=12% Similarity=0.099 Sum_probs=47.9
Q ss_pred HHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccccccHHHHHhCCCCcCceEEEe
Q 009987 56 FDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCALKINTNLCDKFSVGHYPMLLWG 135 (521)
Q Consensus 56 f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~d~~~~l~~~f~I~~yPTl~~f 135 (521)
+...+.+-.+.+.++.|..+- ..|..+...++++|..- ++|.+-..+.. . ..|++.+.
T Consensus 10 L~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS--------dkI~~~~~~~~--~-----------~~P~~~i~ 67 (94)
T cd02974 10 LKAYLERLENPVELVASLDDS-EKSAELLELLEEIASLS--------DKITLEEDNDD--E-----------RKPSFSIN 67 (94)
T ss_pred HHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhC--------CceEEEEecCC--C-----------CCCEEEEe
Confidence 344444444455666777665 88888888888887753 34655433321 0 37999987
Q ss_pred cCCcccCCCCCCCccchhhhhccccCCHHHHHHHHH
Q 009987 136 SPSKFVAGSWEPNQEKKEIRALEDWQTADGLLTWIN 171 (521)
Q Consensus 136 ~~g~~~~~~~~~~~~~~~v~~~~G~~~~~~L~~~i~ 171 (521)
.+|+.. + .+|.|-..-.++..||.
T Consensus 68 ~~~~~~-g-----------IrF~GiP~GhEf~Slil 91 (94)
T cd02974 68 RPGEDT-G-----------IRFAGIPMGHEFTSLVL 91 (94)
T ss_pred cCCCcc-c-----------EEEEecCCchhHHHHHH
Confidence 655211 1 34566555556666553
No 292
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=21.48 E-value=83 Score=25.68 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHH
Q 009987 483 GAALAIALASCAFGALACYWRSQQ 506 (521)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~ 506 (521)
+-+++++|++...|.+.||-|.+-
T Consensus 22 ~gga~llL~~v~l~vvL~C~r~~~ 45 (87)
T PF11980_consen 22 MGGALLLLVAVCLGVVLYCHRFHW 45 (87)
T ss_pred hccHHHHHHHHHHHHHHhhhhhcc
Confidence 334456777777778888867664
No 293
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=21.32 E-value=1.4e+02 Score=28.00 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=26.8
Q ss_pred ecCcccHHH-HHhcCCCCeEEEEEe-cCCChhHhhhhHHHHHHHHHhCCCC
Q 009987 50 ELNATNFDA-VLRDTPATYAVVEFF-ANWCPACRNYKPQYEKVARLFNGPN 98 (521)
Q Consensus 50 ~L~~~~f~~-~l~~~~~~~vlV~Fy-A~WCg~C~~~~P~~~~lA~~~~~~~ 98 (521)
.+++ .|+. .+.+..+++++.-|| ..+---|--..-.+...+.+++..+
T Consensus 18 VVdG-~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n 67 (196)
T KOG0852|consen 18 VVDG-EFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLN 67 (196)
T ss_pred EEcC-cceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcC
Confidence 3344 4443 355556788777777 3443344344455666677776543
No 294
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=20.83 E-value=1.2e+02 Score=29.59 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=26.5
Q ss_pred ccccccccceeecHHHHHHHHHHhhhhhHHHHHHHHHH
Q 009987 469 EDLVVSTNAVVVPVGAALAIALASCAFGALACYWRSQQ 506 (521)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (521)
.-...|.+.+++|+-.|| |.|.-..|..|++|..++.
T Consensus 180 ~stspS~S~vilpvvIal-iVitl~vf~LvgLyr~C~k 216 (259)
T PF07010_consen 180 SSTSPSYSSVILPVVIAL-IVITLSVFTLVGLYRMCWK 216 (259)
T ss_pred ccCCccccchhHHHHHHH-HHHHHHHHHHHHHHHHhhc
Confidence 333346677889998888 6677777889999955543
No 295
>PRK12559 transcriptional regulator Spx; Provisional
Probab=20.52 E-value=1e+02 Score=27.30 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=16.3
Q ss_pred EEEEecCCChhHhhhhHHHHH
Q 009987 69 VVEFFANWCPACRNYKPQYEK 89 (521)
Q Consensus 69 lV~FyA~WCg~C~~~~P~~~~ 89 (521)
+..|+.++|+.|++..-.+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 457889999999997655554
No 296
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.31 E-value=1.7e+02 Score=26.98 Aligned_cols=75 Identities=15% Similarity=0.325 Sum_probs=46.2
Q ss_pred ceecCcccHHHHHhcCCCCeEEEEEecCCChhHhhhhHHHHHHHHHhCCCCCCCCCeEEEEEeeccc---------cccH
Q 009987 48 AVELNATNFDAVLRDTPATYAVVEFFANWCPACRNYKPQYEKVARLFNGPNAAHPGIILMTRVDCAL---------KINT 118 (521)
Q Consensus 48 v~~L~~~~f~~~l~~~~~~~vlV~FyA~WCg~C~~~~P~~~~lA~~~~~~~~~~~~~v~~~~VDc~~---------d~~~ 118 (521)
+..++++.+. +.+.+++++||.=.|+-||.--++. .++.|.+.|++. .+.+..+-|.+ ++-.
T Consensus 10 ~~~~~G~~~~--l~~~~GkVlLIVNtASkCGfTpQYe-gLe~Ly~ky~~~------Gf~VLgFPcNQF~~QEPg~~eEI~ 80 (162)
T COG0386 10 VKDIDGEPVS--LSDYKGKVLLIVNTASKCGFTPQYE-GLEALYKKYKDK------GFEVLGFPCNQFGGQEPGSDEEIA 80 (162)
T ss_pred eeccCCCCcc--HHHhCCcEEEEEEcccccCCcHhHH-HHHHHHHHHhhC------CcEEEeccccccccCCCCCHHHHH
Confidence 4555555444 5556679999999999999543332 345556666653 47788888843 1223
Q ss_pred HHHH-hCCCCcCceE
Q 009987 119 NLCD-KFSVGHYPML 132 (521)
Q Consensus 119 ~l~~-~f~I~~yPTl 132 (521)
++|+ .|||+ +|.+
T Consensus 81 ~fC~~~YgVt-Fp~f 94 (162)
T COG0386 81 KFCQLNYGVT-FPMF 94 (162)
T ss_pred HHHHhccCce-eeee
Confidence 4554 57775 5654
No 297
>PRK14749 hypothetical protein; Provisional
Probab=20.18 E-value=1.6e+02 Score=19.21 Aligned_cols=19 Identities=26% Similarity=0.627 Sum_probs=13.2
Q ss_pred HHHHHHHhhhhhHHHHHHHH
Q 009987 485 ALAIALASCAFGALACYWRS 504 (521)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~ 504 (521)
.||++|| |.||.+...|--
T Consensus 7 iLG~~lA-c~f~ilna~w~E 25 (30)
T PRK14749 7 FVGILLM-CSLSTLVLVWLD 25 (30)
T ss_pred HHHHHHH-HHHHHHHHHHHH
Confidence 4566665 678888888843
No 298
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=20.05 E-value=96 Score=31.70 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhcc
Q 009987 482 VGAALAIALASCAFGALACYWRSQQKNRKYKYQLHSLK 519 (521)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (521)
++-++||++.-...-..-+.|| ++.|||=.+++.+.|
T Consensus 259 ~aSiiaIliIVLIMvIIYLILR-YRRKKKmkKKlQYiK 295 (299)
T PF02009_consen 259 IASIIAILIIVLIMVIIYLILR-YRRKKKMKKKLQYIK 295 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHH
Confidence 4444455444444334455566 445556666666554
Done!