BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009989
(520 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 412 bits (1060), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/442 (45%), Positives = 284/442 (64%), Gaps = 16/442 (3%)
Query: 77 LDHFSFADLPTFSQRYLINTDHWVGPNRLGPIFLYCGNEGDIEWFAVNSGFVWDIAPRFG 136
+DHF F + TF+QRYL+ +W G I Y GNEGDI WF N+GF+WD+A
Sbjct: 12 VDHFGFNTVKTFNQRYLVADKYW--KKNGGSILFYTGNEGDIIWFCNNTGFMWDVAEELK 69
Query: 137 AMLVFPEHRYYGESMPYGSTEVAYQNATTLSYLTAEQALADFAVFITNLKQNL-SAEASP 195
AMLVF EHRYYGES+P+G +++++ L++LT+EQALADFA I +LK+ + AE P
Sbjct: 70 AMLVFAEHRYYGESLPFGDN--SFKDSRHLNFLTSEQALADFAELIKHLKRTIPGAENQP 127
Query: 196 VVLFGGSYGGMLAAWMRLKYPHIAIGALASSAPILQFEDIVPPETFYNIVSSDFKRESAS 255
V+ GGSYGGMLAAW R+KYPH+ +GALA+SAPI QFED+VP F IV++DF++
Sbjct: 128 VIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMKIVTTDFRKSGPH 187
Query: 256 CFNTIKESWGELVSVGQKENGLLELTKTFHLCRELNS--TEDLADWLESAYSYLAMVDYP 313
C +I SW + + +GL LT HLC L S + L DW+ + LAMVDYP
Sbjct: 188 CSESIHRSWDAINRLSNTGSGLQWLTGALHLCSPLTSQDIQHLKDWISETWVNLAMVDYP 247
Query: 314 YPSDFMMPLPGYPIREVCKKIDNAPDATS-ILERIFEGVSVYYNYTGNVDCFQLDDDPH- 371
Y S+F+ PLP +PI+ VC+ + N + S +L+ IF+ ++VYYNY+G V C + +
Sbjct: 248 YASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYSGQVKCLNISETATS 307
Query: 372 --GLDGWNWQACTEMVMPMSSSRDKSMFPAYDYNYSSFKEECWNDFNVIPRPRWITTEFG 429
G GW++QACTE+VMP ++ MF + +N ++C+ + V PRP WITT +G
Sbjct: 308 SLGTLGWSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQWGVRPRPSWITTMYG 367
Query: 430 GHDIKSVLKLFGSNIIFSNGLLDPWSGGSVLQNLSETIVALVTEEGAHHLDLRPSTNEDP 489
G +I S +NI+FSNG LDPWSGG V +++++T+VA+ EGAHHLDLR DP
Sbjct: 368 GKNISS-----HTNIVFSNGELDPWSGGGVTKDITDTLVAVTISEGAHHLDLRTKNALDP 422
Query: 490 DWLKKQRETEIKLIEGWIDNYY 511
+ R E++ ++ WI ++Y
Sbjct: 423 MSVLLARSLEVRHMKNWIRDFY 444
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 317 bits (813), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 174/457 (38%), Positives = 267/457 (58%), Gaps = 33/457 (7%)
Query: 77 LDHFSFADL--PTFSQRYLINTDHWVGPNRLGPIFLYCGNEGDIEWFAVNSGFVWDIAPR 134
LDHF+F TF QR+L++ WV GPIF Y GNEGD+ FA NS FV ++A
Sbjct: 17 LDHFNFERFGNKTFPQRFLVSDRFWVRGE--GPIFFYTGNEGDVWAFANNSAFVAELAAE 74
Query: 135 FGAMLVFPEHRYYGESMPYGSTEVAYQNATTLSYLTAEQALADFAVFITNLKQNLSAEAS 194
GA+LVF EHRYYG+S+P+G+ Q T LT EQALADFA + L+++L A+ +
Sbjct: 75 RGALLVFAEHRYYGKSLPFGAQST--QRGHT-ELLTVEQALADFAELLRALRRDLGAQDA 131
Query: 195 PVVLFGGSYGGMLAAWMRLKYPHIAIGALASSAPILQFEDIVPPETFYNIVSSDFKRESA 254
P + FGGSYGGML+A++R+KYPH+ GALA+SAP+L + F+ V++DF+ +S
Sbjct: 132 PAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFFRDVTADFEGQSP 191
Query: 255 SCFNTIKESWGELVSVGQKENGLLELTK-TFHLCRELNSTEDLAD---WLESAYSYLAMV 310
C ++E++ ++ + + G + + F C+ L+ +DL + +A++ LAM+
Sbjct: 192 KCTQGVREAFRQIKDLFLQ--GAYDTVRWEFGTCQPLSDEKDLTQLFMFARNAFTVLAMM 249
Query: 311 DYPYPSDFMMPLPGYPIREVCKKIDNAPDATSILERIFEGVSVYYNYTGNVDCFQL---- 366
DYPYP+DF+ PLP P++ C ++ + + L + + YN +G+ C+ +
Sbjct: 250 DYPYPTDFLGPLPANPVKVGCDRLLSEAQRITGLRAL---AGLVYNASGSEHCYDIYRLY 306
Query: 367 --DDDPHGLD------GWNWQACTEMVMPMSSSRDKSMFPAYDYNYSSFKEECWNDFNVI 418
DP G W++QACTE+ + +S+ MFP + + C + + V
Sbjct: 307 HSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQRYCLDTWGVW 366
Query: 419 PRPRWITTEFGGHDIKSVLKLFGSNIIFSNGLLDPWSGGSVLQNLSETIVALVTEEGAHH 478
PRP W+ T F G D+++ SNIIFSNG LDPW+GG + +NLS +++A+ + GAHH
Sbjct: 367 PRPDWLLTSFWGGDLRAA-----SNIIFSNGNLDPWAGGGIRRNLSASVIAVTIQGGAHH 421
Query: 479 LDLRPSTNEDPDWLKKQRETEIKLIEGWIDNYYRGKK 515
LDLR S EDP + + R+ E +I W+ R ++
Sbjct: 422 LDLRASHPEDPASVVEARKLEATIIGEWVKAARREQQ 458
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 307 bits (787), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 171/457 (37%), Positives = 262/457 (57%), Gaps = 33/457 (7%)
Query: 77 LDHFSFADL--PTFSQRYLINTDHWVGPNRLGPIFLYCGNEGDIEWFAVNSGFVWDIAPR 134
LDHF+F TF QR+L++ WV GPIF Y GNEGD+ FA NS FV ++A
Sbjct: 14 LDHFNFERFGNKTFPQRFLVSDRFWVRGE--GPIFFYTGNEGDVWAFANNSAFVAELAAE 71
Query: 135 FGAMLVFPEHRYYGESMPYGSTEVAYQNATTLSYLTAEQALADFAVFITNLKQNLSAEAS 194
GA+LVF EHRYYG+S+P+G+ Q T LT EQALADFA + L+++L A+ +
Sbjct: 72 RGALLVFAEHRYYGKSLPFGAQST--QRGHT-ELLTVEQALADFAELLRALRRDLGAQDA 128
Query: 195 PVVLFGGSYGGMLAAWMRLKYPHIAIGALASSAPILQFEDIVPPETFYNIVSSDFKRESA 254
P + FGGSYGG L+A++R KYPH+ GALA+SAP+L + F+ V++DF+ +S
Sbjct: 129 PAIAFGGSYGGXLSAYLRXKYPHLVAGALAASAPVLAVAGLGDSNQFFRDVTADFEGQSP 188
Query: 255 SCFNTIKESWGELVSVGQKENGLLELTK-TFHLCRELNSTEDLAD---WLESAYSYLAMV 310
C ++E++ ++ + + G + + F C+ L+ +DL + +A++ LA
Sbjct: 189 KCTQGVREAFRQIKDLFLQ--GAYDTVRWEFGTCQPLSDEKDLTQLFXFARNAFTVLAXX 246
Query: 311 DYPYPSDFMMPLPGYPIREVCKKIDNAPDATSILERIFEGVSVYYNYTGNVDCFQL---- 366
DYPYP+DF+ PLP P++ C ++ + + L + + YN +G+ C+ +
Sbjct: 247 DYPYPTDFLGPLPANPVKVGCDRLLSEAQRITGLRAL---AGLVYNASGSEHCYDIYRLY 303
Query: 367 --DDDPHGLD------GWNWQACTEMVMPMSSSRDKSMFPAYDYNYSSFKEECWNDFNVI 418
DP G W++QACTE+ + +S+ FP + + C + + V
Sbjct: 304 HSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDXFPDLPFTDELRQRYCLDTWGVW 363
Query: 419 PRPRWITTEFGGHDIKSVLKLFGSNIIFSNGLLDPWSGGSVLQNLSETIVALVTEEGAHH 478
PRP W+ T F G D+++ SNIIFSNG LDPW+GG + +NLS +++A+ + GAHH
Sbjct: 364 PRPDWLLTSFWGGDLRAA-----SNIIFSNGNLDPWAGGGIRRNLSASVIAVTIQGGAHH 418
Query: 479 LDLRPSTNEDPDWLKKQRETEIKLIEGWIDNYYRGKK 515
LDLR S EDP + + R+ E +I W+ R ++
Sbjct: 419 LDLRASHPEDPASVVEARKLEATIIGEWVKAARREQQ 455
>pdb|2DF7|A Chain A, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|B Chain B, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|C Chain C, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|D Chain D, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|E Chain E, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|F Chain F, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|G Chain G, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|H Chain H, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|I Chain I, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|J Chain J, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|K Chain K, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|L Chain L, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|M Chain M, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|N Chain N, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|O Chain O, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|P Chain P, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|Q Chain Q, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|R Chain R, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|S Chain S, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|T Chain T, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
Length = 458
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 196 VVLFGGSYGGMLAAWMRLKYPHIAIGALASSAPILQFEDIVPPETFYNIVSSDFKRESAS 255
V + GG+Y G L + Y +A G++ + A + FE I PE N+V +++ R
Sbjct: 335 VTIHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIPNPELAKNLV-TEYGRFDPG 393
Query: 256 CFNTIKESWGELVSVGQK 273
N K E +G K
Sbjct: 394 AMNYTKLILSERERLGIK 411
>pdb|1WCD|J Chain J, Crystal Structure Of Ibdv T1 Virus-like Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
Length = 441
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 196 VVLFGGSYGGMLAAWMRLKYPHIAIGALASSAPILQFEDIVPPETFYNIVSSDFKRESAS 255
V + GG+Y G L + Y +A G++ + A + FE I PE N+V +++ R
Sbjct: 335 VTIHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIPNPELAKNLV-TEYGRFDPG 393
Query: 256 CFNTIKESWGELVSVGQK 273
N K E +G K
Sbjct: 394 AMNYTKLILSERDRLGIK 411
>pdb|1WCE|A Chain A, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|B Chain B, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|C Chain C, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|D Chain D, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|E Chain E, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|F Chain F, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|G Chain G, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|H Chain H, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|I Chain I, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|J Chain J, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|K Chain K, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|L Chain L, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|M Chain M, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
Length = 441
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 196 VVLFGGSYGGMLAAWMRLKYPHIAIGALASSAPILQFEDIVPPETFYNIVSSDFKRESAS 255
V + GG+Y G L + Y +A G++ + A + FE I PE N+V +++ R
Sbjct: 335 VTIHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIPNPELAKNLV-TEYGRFDPG 393
Query: 256 CFNTIKESWGELVSVGQK 273
N K E +G K
Sbjct: 394 AMNYTKLILSERDRLGIK 411
>pdb|3FBM|A Chain A, D431n Mutant Vp2 Protein Of Infectious Bursal Disease
Virus; Derived T1 Particles
Length = 452
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 196 VVLFGGSYGGMLAAWMRLKYPHIAIGALASSAPILQFEDIVPPETFYNIVSSDFKRESAS 255
V + GG+Y G L + Y +A G++ + A + FE I PE N+V +++ R
Sbjct: 335 VTIHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIPNPELAKNLV-TEYGRFDPG 393
Query: 256 CFNTIKESWGELVSVGQK 273
N K E +G K
Sbjct: 394 AMNYTKLILSERDRLGIK 411
>pdb|2GSY|A Chain A, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|B Chain B, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|C Chain C, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|D Chain D, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|E Chain E, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|F Chain F, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|G Chain G, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|H Chain H, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|I Chain I, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|J Chain J, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|K Chain K, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|L Chain L, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|M Chain M, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|N Chain N, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|O Chain O, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|P Chain P, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|Q Chain Q, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|R Chain R, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|S Chain S, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|T Chain T, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
Length = 456
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 196 VVLFGGSYGGMLAAWMRLKYPHIAIGALASSAPILQFEDIVPPETFYNIVSSDFKRESAS 255
V + GG+Y G L + Y +A G++ + A + FE I PE N+V +++ R
Sbjct: 335 VTIHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIPNPELAKNLV-TEYGRFDPG 393
Query: 256 CFNTIKESWGELVSVGQK 273
N K E +G K
Sbjct: 394 AMNYTKLILSERDRLGIK 411
>pdb|1EYY|A Chain A, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EYY|B Chain B, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EYY|C Chain C, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EYY|D Chain D, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|A Chain A, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|B Chain B, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|C Chain C, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|D Chain D, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi
Length = 510
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 248 DFKR----ESASCFNTIKESW----GELVSVGQKENGLLELTKTFHLCRELNSTEDLADW 299
DF+R + AS TI ++++ E L E+ T + R N AD
Sbjct: 45 DFRRLNNSKRASLLRTIASELEARSDDIIARAHLETALPEVRLTGEIARTANQLRLFADV 104
Query: 300 LESAYSYLAMVDYPYPSDFMMPLP 323
+ S + A++D P P+ +P P
Sbjct: 105 VNSGSYHQAILDTPNPTRAPLPKP 128
>pdb|3TC9|A Chain A, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A
Resolution
pdb|3TC9|B Chain B, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A
Resolution
Length = 430
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 81 SFADLPTFSQRYLINTDHWVGPNRLGPIFLYCGNEGDIEWFAVNSGFVWDIAPRFGAMLV 140
++A + +Q Y++ +D+ RL ++ CG +G +W APR G +
Sbjct: 282 NYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARXHAPRQGTFVK 341
Query: 141 FPEHRYYGESMPY 153
P Y G S Y
Sbjct: 342 NPA--YKGSSDEY 352
>pdb|1ULZ|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit Of
Pyruvate Carboxylase
Length = 451
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 130 DIAPRFGAMLVFPEHR-YYGESMPYGSTEVAYQNATTLSYLTAEQA 174
+IAP ++++ PE R YYG + + E+ Y NA T+ ++ ++
Sbjct: 239 EIAP---SLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEG 281
>pdb|2PBL|A Chain A, Crystal Structure Of A Putative Thioesterase (Tm1040_2492)
From Silicibacter Sp. Tm1040 At 1.79 A Resolution
pdb|2PBL|B Chain B, Crystal Structure Of A Putative Thioesterase (Tm1040_2492)
From Silicibacter Sp. Tm1040 At 1.79 A Resolution
pdb|2PBL|C Chain C, Crystal Structure Of A Putative Thioesterase (Tm1040_2492)
From Silicibacter Sp. Tm1040 At 1.79 A Resolution
pdb|2PBL|D Chain D, Crystal Structure Of A Putative Thioesterase (Tm1040_2492)
From Silicibacter Sp. Tm1040 At 1.79 A Resolution
Length = 262
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 192 EASPVVLFGGSYGGMLAAWMRLKYPHIAIGALASSAPILQFEDIVPPETFYNIVSSDFKR 251
E +PV LF +GG A+ + + H+A+GAL+ + + PE + ++
Sbjct: 59 EGTPVGLFVFVHGGYWXAFDKSSWSHLAVGALSKGWAVAXPSYELCPEVRISEITQQI-- 116
Query: 252 ESASCFNTIKESWGELVSVGQKENGLL 278
S + KE G +V G G L
Sbjct: 117 -SQAVTAAAKEIDGPIVLAGHSAGGHL 142
>pdb|1YJ8|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
pdb|1YJ8|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
pdb|1YJ8|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
Length = 375
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 241 FYNIVSSDFKRESASCF-----NTIKESWGEL---VSVGQKENGLLELTKTFHLCRELNS 292
F +I++S +A C +T K++W EL + GQK G + L +H+ +E N
Sbjct: 279 FADIITSFLAGRNAKCSAEFIKSTPKKTWEELENEILKGQKLQGTVTLKYVYHMIKEKNM 338
Query: 293 TED 295
T +
Sbjct: 339 TNE 341
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,953,798
Number of Sequences: 62578
Number of extensions: 668142
Number of successful extensions: 1384
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1358
Number of HSP's gapped (non-prelim): 24
length of query: 520
length of database: 14,973,337
effective HSP length: 103
effective length of query: 417
effective length of database: 8,527,803
effective search space: 3556093851
effective search space used: 3556093851
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)