Query 009990
Match_columns 520
No_of_seqs 305 out of 2880
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 17:27:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009990.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009990hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 99.9 6.2E-26 2.1E-30 243.0 16.6 381 68-488 11-468 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.9 4.8E-23 1.6E-27 218.5 28.2 186 64-281 8-198 (491)
3 3o7q_A L-fucose-proton symport 99.8 1.2E-18 4E-23 181.5 27.4 181 65-278 22-228 (438)
4 1pw4_A Glycerol-3-phosphate tr 99.8 1E-19 3.6E-24 190.0 16.1 176 67-279 26-206 (451)
5 4gc0_A D-xylose-proton symport 99.8 7.1E-19 2.4E-23 186.2 18.3 149 105-270 55-211 (491)
6 2gfp_A EMRD, multidrug resista 99.7 2.3E-18 7.7E-23 176.0 9.8 167 72-274 3-169 (375)
7 2cfq_A Lactose permease; trans 99.5 1E-15 3.4E-20 159.4 2.5 169 70-269 8-177 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 1.9E-13 6.5E-18 142.3 18.5 178 69-279 252-433 (451)
9 3o7q_A L-fucose-proton symport 99.4 1.1E-11 3.8E-16 128.5 18.0 167 70-274 259-427 (438)
10 2cfq_A Lactose permease; trans 99.3 1.5E-11 5.1E-16 127.7 15.6 174 71-279 222-399 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 1.4E-10 4.9E-15 122.3 12.2 185 71-282 285-474 (491)
12 4gc0_A D-xylose-proton symport 99.0 2.4E-08 8.1E-13 105.1 22.4 185 68-283 276-466 (491)
13 2gfp_A EMRD, multidrug resista 98.9 1.3E-09 4.5E-14 110.6 5.4 165 69-267 199-364 (375)
14 2xut_A Proton/peptide symporte 98.1 2.8E-06 9.7E-11 90.0 7.1 91 186-282 404-505 (524)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.93 E-value=6.2e-26 Score=242.98 Aligned_cols=381 Identities=23% Similarity=0.330 Sum_probs=238.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcC------CChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHH
Q 009990 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH------KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (520)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~ 141 (520)
++.++.+.+..++..+++|++..+++.|+++++| ++..+++++.+++.++..++.+++|+++||++|||+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~ 90 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW 90 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 3456677888999999999999999999999999 9999999999999999999999999999994499999999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchh-hHHHHHHHHHHHHHhccccchhhhhhhhccCCCCC
Q 009990 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW-QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (520)
Q Consensus 142 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~ 220 (520)
+.++..++.+++.++ . +...+++++++.|++.+...++..++++|.+|+++
T Consensus 91 ~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 142 (524)
T 2xut_A 91 LSLIYCVGHAFLAIF----------------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN 142 (524)
T ss_dssp HHHHHHHHHHHHHHT----------------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT
T ss_pred HHHHHHHHHHHHHHh----------------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc
Confidence 999999998888775 2 46788899999999999999999999999999887
Q ss_pred hhhhhhhh---hHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCCChhhHHH
Q 009990 221 KDYKTHLD---RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVA 297 (520)
Q Consensus 221 ~~~~~~r~---~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (520)
|+ ..+++++.+.++|..++|.+++++.+..||++.|++.+++.++++++++...++.++.+|++++..+..
T Consensus 143 ------r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (524)
T 2xut_A 143 ------KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFL 216 (524)
T ss_dssp ------TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC----------
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHH
Confidence 64 455668999999999999999999988899999998888777666665554444433333333333333
Q ss_pred HHHHHHHHhhccccCCcccccccccCCCcccccCCcccccCCchhHhHHHHh---hhccccCCCCCC-------ccccch
Q 009990 298 QVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAAL---ELKEDVINPSPW-------KLCTVT 367 (520)
Q Consensus 298 ~v~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~---~~~~~~~~~~~~-------~~~~~~ 367 (520)
+.+..+.+++..+.. .... +........... .+.+.+....+..... ...+. ..+.+| +.++..
T Consensus 217 ~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 290 (524)
T 2xut_A 217 PVIRSALLTKVEGKG-NIGL-VLALIGGVSAAY---ALVNIPTLGIVAGLCCAMVLVMGF-VGAGASLQLERARKSHPDA 290 (524)
T ss_dssp ----------CTTHH-HHHH-HHHHHHHHHHHH---TGGGTTTTCSSHHHHHHHHHHHHH-HHTGGGTHHHHSCCSCCSS
T ss_pred HHHHHHHhhhhcccC-ccch-hhhhhhhhhhhh---hhcccchhhhhhhhhhhhhhhhcc-cccchhhHHhhhhccccHh
Confidence 333333332211000 0000 000000000000 0000000000000000 00000 000011 011122
Q ss_pred hHHHHHHHHhhchhhhHHHHHHHHHhhhhhHHHHHHHhhcccc---CCe-----------EeCC---------CCCCCCC
Q 009990 368 QVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM---GKL-----------KLPV---------TCHPRGA 424 (520)
Q Consensus 368 ~v~~~k~~~~~l~~~~~~~~~~~~~~q~~t~~~~~~~~~~~~~---~g~-----------~ip~---------~~~~~~~ 424 (520)
+.++.|+++..+++++....++..+.|..+.+..+..+++... .+. ..|. +|++++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (524)
T 2xut_A 291 AVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL 370 (524)
T ss_dssp SSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCC
Confidence 3345566666667777777778888888888777766555422 000 0011 1222223
Q ss_pred CchhHHHhhHHHHHHHHHHH----------------------------------hhHhhhhccCCcchhHHHHHHHHHHh
Q 009990 425 SQLQRVGIGLAVSILSVIWA----------------------------------GLLEFLYEEAPDAMKSIGSAYAALAG 470 (520)
Q Consensus 425 s~~~~i~iG~~~~~~~~~~~----------------------------------~~~e~~~~~aP~~~rg~~~g~~~~~~ 470 (520)
+...++.+|.++.+++++.. ....++.+.+|+++||+++|+++...
T Consensus 371 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 450 (524)
T 2xut_A 371 TALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSV 450 (524)
T ss_dssp CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHH
Confidence 44455666665555544321 12234568899999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 009990 471 GLGCFAASILNSIIKSVT 488 (520)
Q Consensus 471 ~lg~~l~~~l~~~v~~~t 488 (520)
++|+.+++.+.+.+...+
T Consensus 451 ~~g~~~g~~~~g~~~~~~ 468 (524)
T 2xut_A 451 TVGNLWVLLANVSVKSPT 468 (524)
T ss_dssp HHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 999999999999886643
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.92 E-value=4.8e-23 Score=218.53 Aligned_cols=186 Identities=23% Similarity=0.394 Sum_probs=162.9
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh-----cCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHH
Q 009990 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT 138 (520)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~ 138 (520)
.+++++.++.+.+..++..+++|++...++.|+++. +|++..+.+++.+.+.++..++.+++|+++||++|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~ 87 (491)
T 4aps_A 8 FFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPA 87 (491)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 344566788999999999999999999999999998 999999999999999999999999999999993399999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCC
Q 009990 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (520)
Q Consensus 139 i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~ 218 (520)
+.++.++..++.++++++ .+...++++|++.|+|.+...++..++++|.+|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 139 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALP----------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDE 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHSC----------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence 999999999999888764 3466788999999999999999999999999998
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhcc
Q 009990 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (520)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~ 281 (520)
++.+ |+.++++++.+.++|..++|.+++++.+..||++.|++.++..++++++++...+
T Consensus 140 ~~~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 140 HDRR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp CTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 7733 7778888999999999999999999999899999999988777766666554433
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.83 E-value=1.2e-18 Score=181.51 Aligned_cols=181 Identities=12% Similarity=0.006 Sum_probs=148.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHH
Q 009990 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (520)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~ 144 (520)
+++++.++.+.+..++..+....... +..++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDI-LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 34566667777777777666654444 45567889999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhh
Q 009990 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (520)
Q Consensus 145 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~ 224 (520)
+..++.+++...... .+.+.++++|++.|+|.+...+...++++|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~-------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 150 (438)
T 3o7q_A 100 LYALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---- 150 (438)
T ss_dssp HHHHHHHHHHHHHHT-------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT----
T ss_pred HHHHHHHHHHhcccc-------------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh----
Confidence 999999888332110 357888999999999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHhhhh-cccc-------------------------hhHHHHHHHHHHHHHHHHHHh
Q 009990 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGISNMLFFI 278 (520)
Q Consensus 225 ~~r~~~~~~~~~~~~lg~~i~~~i~~~l~-~~~g-------------------------~~~~f~i~~i~~~i~~~~~~~ 278 (520)
|++.+++++.+.++|..+++.+++++. +..+ |++.|++.++..++..++++.
T Consensus 151 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 151 --GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987 5444 999997766655544444433
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.82 E-value=1e-19 Score=190.02 Aligned_cols=176 Identities=13% Similarity=0.069 Sum_probs=150.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 009990 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (520)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~ 146 (520)
+|+.++.+.+..++..+..+.+...++ ++.+++ .+..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHH
Confidence 456677777777777777665566555 555567 9999999999999999999999999999996 9999999999999
Q ss_pred HHHHHHHHh----hhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChh
Q 009990 147 LAGLTGITL----CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (520)
Q Consensus 147 ~lg~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~ 222 (520)
.++.+++++ + .+...++++|++.|++.+...+...++++|.+|+++
T Consensus 103 ~~~~~~~~~~~~~~----------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~-- 152 (451)
T 1pw4_A 103 AAVMLFMGFVPWAT----------------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE-- 152 (451)
T ss_dssp HHHHHHHHHCHHHH----------------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH--
T ss_pred HHHHHHHHhhhhcc----------------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh--
Confidence 999998887 4 345678889999999999999999999999999887
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcccc-hhHHHHHHHHHHHHHHHHHHhh
Q 009990 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 223 ~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
|++.+++++.+.++|..++|.+++++.+..| |++.|++.+++.++..++.++.
T Consensus 153 ----r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~ 206 (451)
T 1pw4_A 153 ----RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM 206 (451)
T ss_dssp ----HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999888888 9999998887766555544443
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.80 E-value=7.1e-19 Score=186.19 Aligned_cols=149 Identities=13% Similarity=0.157 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcch
Q 009990 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKS 184 (520)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (520)
...+++.+++.++..++++++|+++||+ |||+++.++.+++.++.++.++.......... .. .-...-.
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~--~~--------~~~~~~a 123 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP--DN--------TVPVYLA 123 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS--SS--------SCCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--hh--------HHHHHHh
Confidence 4556788889999999999999999996 99999999999999999988764210000000 00 0000012
Q ss_pred hhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhcc--------c
Q 009990 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--------H 256 (520)
Q Consensus 185 ~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~--------~ 256 (520)
.+...++++|++.|+|.|+..+..+.+++|..|++. |+...+++..+..+|..+++.++..+... .
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 197 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTD 197 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccch
Confidence 467899999999999999999999999999999988 99999999999999999988887665432 2
Q ss_pred chhHHHHHHHHHHH
Q 009990 257 GWGSAFGALAIAMG 270 (520)
Q Consensus 257 g~~~~f~i~~i~~~ 270 (520)
+|++.+.+..+..+
T Consensus 198 ~~~~~~~~~~~~~~ 211 (491)
T 4gc0_A 198 GWRYMFASECIPAL 211 (491)
T ss_dssp HHHHHHHTTHHHHH
T ss_pred hhHHHhhhhhhhhh
Confidence 46655554444433
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.74 E-value=2.3e-18 Score=175.96 Aligned_cols=167 Identities=13% Similarity=0.115 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 009990 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (520)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg~~ 151 (520)
+.+.+..++..+........++. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 34555566666666555555554 5678999999999999999999999999999999996 999999999999999998
Q ss_pred HHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHH
Q 009990 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (520)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~ 231 (520)
++.+. .+...+++++++.|++.+...+...+++.|.+|+++ |++.+
T Consensus 81 ~~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 126 (375)
T 2gfp_A 81 VAVTT----------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHAN 126 (375)
T ss_dssp HHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHH
T ss_pred HHHHh----------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHH
Confidence 88875 467888999999999999999999999999999888 99999
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHH
Q 009990 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (520)
Q Consensus 232 ~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~ 274 (520)
++++...++|..++|.+++++.+..||++.|++.++..++..+
T Consensus 127 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 127 SLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888999999877766554443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.54 E-value=1e-15 Score=159.36 Aligned_cols=169 Identities=11% Similarity=-0.122 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~lg 149 (520)
..+.+.+..++..+++..+...++.|+++++|++..+.+++.+.+.++..++++++|+++||+ |||++++++..++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence 455565656666666666678899999999999999999999999999999999999999996 9999999888776553
Q ss_pred HHHHHhhhcccccCCCCCCccccccccCCCCCcchhhH-HHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhh
Q 009990 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (520)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (520)
...+...... ... ..++.++.+.+++.+...+...+...+..++.. + .++
T Consensus 87 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~---~~~ 137 (417)
T 2cfq_A 87 FAPFFIFIFG-------------------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-R---RSN 137 (417)
T ss_dssp HHHHHHHTHH-------------------------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH-H---HHT
T ss_pred HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh-h---hcc
Confidence 3222111000 000 011223333334333333333333333332211 1 155
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHH
Q 009990 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (520)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~ 269 (520)
..++..+...++|..++|.+++++.+ .+|++.|++.++..
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 56667667778999999999999876 58999988765553
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.53 E-value=1.9e-13 Score=142.34 Aligned_cols=178 Identities=15% Similarity=0.131 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhcc--chhHHHHHHHHHH
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL--GRYWTIAIFTTIY 146 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~--GR~~~i~~~~~~~ 146 (520)
+.++.+.+..++..+..+++..+++.|+++.+|++..+++.+.+.+.++..++.++.|+++|| + |||+.+.++..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 467777788888888888999999999998899999999999999999999999999999999 5 8998888777666
Q ss_pred H-HHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhh
Q 009990 147 L-AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (520)
Q Consensus 147 ~-lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (520)
. ++.+++.+. ++ .+...+++..++.|++.++..+...++..|.+|++.
T Consensus 331 ~~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----- 379 (451)
T 1pw4_A 331 VTIATIVYWMN-------PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA----- 379 (451)
T ss_dssp HHHHHHHTTSC-------CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH-----
T ss_pred HHHHHHHHHHh-------cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh-----
Confidence 6 555544432 11 235566677778899888888888999999999888
Q ss_pred hhhhHHHHHHHHHHH-HHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 009990 226 HLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 226 ~r~~~~~~~~~~~~l-g~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
|++.+++++...++ |..++|.+.+++.+..||+..|++.+++.+++.++.+..
T Consensus 380 -~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 380 -AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999998887777666665543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.37 E-value=1.1e-11 Score=128.45 Aligned_cols=167 Identities=10% Similarity=0.009 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH-hhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 009990 70 AALFIFGNEMAERMAYFGLSVNMVTF-MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (520)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~l 148 (520)
.++...+..++.....+++..+++.| +++.+|++..+++...+.+.++..++.+++|+++||+ |||+.+.++.++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMA 337 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 45666666677777788888999999 8888899999999999999999999999999999996 999999999988888
Q ss_pred HHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhh
Q 009990 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (520)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~ 228 (520)
+.+++.+. .+.. .++..++.+++.+...+...++..|.+|++ ++
T Consensus 338 ~~~~~~~~----------------------------~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~ 381 (438)
T 3o7q_A 338 LCLISAFA----------------------------GGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TK 381 (438)
T ss_dssp HHHHHHHC----------------------------CHHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HH
T ss_pred HHHHHHHc----------------------------CCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------cc
Confidence 87776653 1222 234447788898998999999999988853 34
Q ss_pred hHHHHHHHHHHHHHHHHhHHHhhhhcccc-hhHHHHHHHHHHHHHHH
Q 009990 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNM 274 (520)
Q Consensus 229 ~~~~~~~~~~~lg~~i~~~i~~~l~~~~g-~~~~f~i~~i~~~i~~~ 274 (520)
.+.++.. ...+|..++|.+.|++.+..| ++..|++.+++.++.++
T Consensus 382 ~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred chhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4444444 456999999999999999888 99998876665544443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.32 E-value=1.5e-11 Score=127.70 Aligned_cols=174 Identities=10% Similarity=0.051 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCC---hHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s---~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~ 147 (520)
++...+..++....++....+++.|+.+.++.. ....+...++..+...++.+++|+++||+ |||+++.++.++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~ 300 (417)
T 2cfq_A 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Confidence 333333333334444455566888887766532 33445556666677788899999999996 99999988888777
Q ss_pred HHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhh
Q 009990 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (520)
Q Consensus 148 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (520)
++.+++.+. .+...+++..++.+++.+...+....+.+|.+|++. |
T Consensus 301 ~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~ 346 (417)
T 2cfq_A 301 VRIIGSSFA----------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------S 346 (417)
T ss_dssp HHHHHHTTC----------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------H
T ss_pred HHHHHHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H
Confidence 766555432 123445555566677666666677889999999877 8
Q ss_pred hhHHHH-HHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 009990 228 DRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (520)
Q Consensus 228 ~~~~~~-~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~ 279 (520)
++++++ ++....+|+.++|.++|++.+..|+...|.+.+++.+++.++.+..
T Consensus 347 g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 998888 5778889999999999999888888888888777766666655443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.15 E-value=1.4e-10 Score=122.26 Aligned_cols=185 Identities=12% Similarity=0.017 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHH-----HHHHH
Q 009990 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-----IFTTI 145 (520)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~-----~~~~~ 145 (520)
.+.+.+..++....+......++.|+.+.++.+....+.......+...++.++.|+++||+ |||+... ++.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 44445455555566666777888999988888866777777778888888899999999996 9876544 66666
Q ss_pred HHHHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhh
Q 009990 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (520)
Q Consensus 146 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~ 225 (520)
..++.+++.+...... + +...+...+++..++.|++.+...+...++..|.+|++.
T Consensus 364 ~~~~~~~~~~~~~~~~--~-----------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~----- 419 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG--T-----------------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF----- 419 (491)
T ss_dssp HHHHHTTTHHHHHHCC--C-----------------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC-----
T ss_pred HHHHHHHHHHHHHhcC--C-----------------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH-----
Confidence 6666555544311000 0 000234566677788899999988999999999999998
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHHHHHHHHHHHHhhccc
Q 009990 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (520)
Q Consensus 226 ~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i~~~i~~~~~~~~~~~ 282 (520)
|+.+.++++...++|..+++.+.+++.+. ++.+.|.+.+++.+++.++++...++
T Consensus 420 -~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 420 -NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp -SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988764 66677777776666666655554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.02 E-value=2.4e-08 Score=105.05 Aligned_cols=185 Identities=9% Similarity=-0.008 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 009990 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (520)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~~~ 147 (520)
++....+....+......+.+. ....++.+..+.+............+...++.++++++.||+ |||+.++.+.....
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~ 353 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVL-YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMA 353 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHH-hcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHH
Confidence 3333333333333333343333 445566677888887777777777788889999999999996 99999999988888
Q ss_pred HHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhh
Q 009990 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (520)
Q Consensus 148 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (520)
++.+.+....... .. .....+.+..+..+++ .+..+....+.+|.||.+. |
T Consensus 354 ~~~~~l~~~~~~~---~~-------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R 404 (491)
T 4gc0_A 354 IGMFSLGTAFYTQ---AP-------------------GIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------R 404 (491)
T ss_dssp HHHHHHHHHHHTT---CC-------------------HHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------H
T ss_pred HHHHHHHHHHhcc---cc-------------------hHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------H
Confidence 8777665542110 00 1122222222222333 2334667789999999999 9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhhhhcc------cchhHHHHHHHHHHHHHHHHHHhhcccc
Q 009990 228 DRFFNFFYLSVTVGAIVAFTLVVYIQME------HGWGSAFGALAIAMGISNMLFFIGTPLY 283 (520)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~~~------~g~~~~f~i~~i~~~i~~~~~~~~~~~~ 283 (520)
+++.++.+....+++.+++.+.+++.+. .++.+.|++.+++.+++.+..++..|+.
T Consensus 405 ~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 405 GKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 9999999998999999888887766442 3455677777777666666665655544
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.86 E-value=1.3e-09 Score=110.61 Aligned_cols=165 Identities=12% Similarity=-0.089 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH-HH
Q 009990 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YL 147 (520)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~LsDr~~GR~~~i~~~~~~-~~ 147 (520)
|.++...+..++.....+++..+++.|+++.+|++..+++.......++..++.++.|+++||+ ||+ +..+..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4566777777777888888888899999988999999999999999999999999999999996 772 2333322 22
Q ss_pred HHHHHHHhhhcccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhh
Q 009990 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (520)
Q Consensus 148 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r 227 (520)
++..++..... + ..+...+++..++.+++.+...+...++..|.+| ++ |
T Consensus 276 ~~~~~~~~~~~-----~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~ 324 (375)
T 2gfp_A 276 AGLLMWIPDWF-----G-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------A 324 (375)
T ss_dssp TSSSSSHHHHH-----H-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------H
T ss_pred HHHHHHHHhhh-----c-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------c
Confidence 22221111100 0 0244556677778899999999999999999987 55 8
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhhhhcccchhHHHHHHHH
Q 009990 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 267 (520)
Q Consensus 228 ~~~~~~~~~~~~lg~~i~~~i~~~l~~~~g~~~~f~i~~i 267 (520)
++..++++...++|..++|.+.+++.+..+|...+.+.++
T Consensus 325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999999999999999999999999887778877765443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.12 E-value=2.8e-06 Score=89.98 Aligned_cols=91 Identities=15% Similarity=0.134 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHHhccccchhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhHHHhhhhccc--ch-----
Q 009990 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GW----- 258 (520)
Q Consensus 186 ~~~~l~~~~~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~r~~~~~~~~~~~~lg~~i~~~i~~~l~~~~--g~----- 258 (520)
+...++++.++.|++.+...+...++..|.+|++. |++++++++...++|..++|.+.+++.+.. +|
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~ 477 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG 477 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 34556667788999999999999999999999988 999999999999999999999999987743 23
Q ss_pred ----hHHHHHHHHHHHHHHHHHHhhccc
Q 009990 259 ----GSAFGALAIAMGISNMLFFIGTPL 282 (520)
Q Consensus 259 ----~~~f~i~~i~~~i~~~~~~~~~~~ 282 (520)
+..|++.+++.+++.+++++..++
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (524)
T 2xut_A 478 MSVTAFQMFFFAGFAILAAIVFALYARS 505 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 233655555555555555444333
Done!