BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009991
(520 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 310 bits (794), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 201/508 (39%), Positives = 284/508 (55%), Gaps = 43/508 (8%)
Query: 37 FPIREATIKDLQLAFKQNKLTSRQLVEFYLGEI---HRLNPLLHGVIEVNPDALSQADKA 93
FP E + DLQ +L S L + YL I R P L VIE+NPDAL +A A
Sbjct: 6 FPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEA--A 63
Query: 94 DYERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAG 153
+ +R+ + LHGIP+LLKDNI M T+AGS AL G P DA +V +LR+AG
Sbjct: 64 ERDRERRDGRLRGPLHGIPLLLKDNI-NAAPMATSAGSLALQG-FRPDDAYLVRRLRDAG 121
Query: 154 AIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWXXXXXXXXXXXXNLVAVS 213
A++LGK +LSEWANFR +++ +G+ ARGGQ +NPY +S P NL +V+
Sbjct: 122 AVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVA 181
Query: 214 LGTETDGXXXXXXXXXXVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAI 273
+GTETDG VVG+KPTVGL SR G+IP++ QD+ GP+ R+VADA VL AI
Sbjct: 182 IGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAI 241
Query: 274 AGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHL 333
AG D DPAT+ + Y + P GL+GKR+G+++ P PL +
Sbjct: 242 AGRDDADPATATMPGRAVY-DYTARLDPQGLRGKRIGLLQTPLLKYRGMPPL---IEQAA 297
Query: 334 QTLRQEGALVIDHLEIANVNSKNSISNDETIAMLAEFKLALNAYLKELVTSPVRSLAEVI 393
LR+ GA+V+ +E+ N + + + E +L EFK L Y +P+RSLA++I
Sbjct: 298 TELRRAGAVVV-PVELPN---QGAWAEAERTLLLYEFKAGLERYFNTH-RAPLRSLADLI 352
Query: 394 AFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTR----DGFEKLMSTNN 449
AFN S +++ +GQ+LL+ A+AT G+ + A I R +G + ++ +
Sbjct: 353 AFNQAHSK-QELGLFGQELLVEADATAGL--ADPAYIRARSDARRLAGPEGIDAALAAHQ 409
Query: 450 LDALVTP-----------------RSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGL 492
LDALV P SY++ AV G+P + VP G +G+P G+ F G
Sbjct: 410 LDALVAPTTGVAWPIRSEGDDFPGESYSAA--AVAGYPSLTVPMG-QIDGLPVGLLFMGT 466
Query: 493 KGTEPKLIEIAYGFEQATKIRKPPSFKS 520
+EPKLIE+AY +EQ T+ R+PP F +
Sbjct: 467 AWSEPKLIEMAYAYEQRTRARRPPHFDT 494
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 128/511 (25%), Positives = 215/511 (42%), Gaps = 88/511 (17%)
Query: 43 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIE-VNPDALSQADKADYERKVKA 101
++ +L+ K+ +++ +++VE + ++ + I + AL QA+ ER+
Sbjct: 6 SLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLK-ERE--- 61
Query: 102 PGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKAS 161
LP L GIPI +KDNI + + TT S L V P DA V+ +L++AGA+I+GK +
Sbjct: 62 ---LP-LFGIPIAVKDNILVEGE-KTTCASKILENFVAPYDATVIERLKKAGALIVGKTN 116
Query: 162 LSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWXXXXXXXXXXXXNLVAVSLGTETDGX 221
L E+A S+ F KNP+ L P VSLG++T G
Sbjct: 117 LDEFAMGSSTEYSAFFPT-----KNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGS 171
Query: 222 XXXXXXXXXVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDHNDP 281
V+GIKPT G SR G++ D +G R D VL+ I+G+D D
Sbjct: 172 IRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKD- 230
Query: 282 ATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGA 341
+TSA +P + + +K +KG ++G+ + FF + + F++ ++ L +EG
Sbjct: 231 STSAK---VPVPEWSEEVKKE-VKGLKIGLPKE-FFEYELQPQVKEAFENFIKELEKEG- 284
Query: 342 LVIDHLEIANVNSKNSISNDETIAMLAEFKLALNAYLKELVTSPVRSLAEVIAFNNKFSD 401
EI V+ L K ++ Y + +P + + + ++
Sbjct: 285 -----FEIKEVS-------------LPHVKYSIPTY---YIIAPSEASSNLARYDGVRYG 323
Query: 402 LEKIKEYGQDLLLSAEATD-GIGKTEKAAIL-------------------NLERFTRDGF 441
+ KEY + A D G G K I+ + R + F
Sbjct: 324 Y-RAKEYKDIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITNDF 382
Query: 442 EKLMSTNNLDALVTPRS-----------------YASTLLAV----GGFPGINVPAGYDS 480
L + +D + +P + Y S +L V G P I++P +
Sbjct: 383 --LKAFEEVDVIASPTTPTLPFKFGERLENPIEMYLSDILTVPANLAGLPAISIPIAW-K 439
Query: 481 EGVPFGICFGGLKGTEPKLIEIAYGFEQATK 511
+G+P G G E L++I+Y +EQ K
Sbjct: 440 DGLPVGGQLIGKHWDETTLLQISYLWEQKFK 470
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 128/500 (25%), Positives = 219/500 (43%), Gaps = 60/500 (12%)
Query: 39 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYER 97
IR ++++L K K+ +V+ I +P + + ++ + A+ +A + D
Sbjct: 3 IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELD--- 59
Query: 98 KVKAPGSLPG-LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAII 156
+++A + G L GIP+ +KDNI T + + TT S L G V ++ V+ KL + A++
Sbjct: 60 ELQAKDQMDGKLFGIPMGIKDNIIT-NGLETTCASKMLEGFVPIYESTVMEKLHKENAVL 118
Query: 157 LGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWXXXXXXXXXXXXNLVAVSLGT 216
+GK ++ E+A S+ + + NP+ A P LV +SLG+
Sbjct: 119 IGKLNMDEFAMGGSTE-----TSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGS 173
Query: 217 ETDGXXXXXXXXXXVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGF 276
+T G VVG+KPT G SR G++ D +GP+ R V D VL+AI+G
Sbjct: 174 DTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGA 233
Query: 277 DHNDPATSAASKYIPHGGYKQFIKPHG--LKGKRLGVVRNPFFNILKGSPLAQVFDHHLQ 334
D ND +TSA + F G +KG ++ + + + + + + ++
Sbjct: 234 DVND-STSAPVDDV------DFTSEIGKDIKGLKVALPKE-YLGEGVADDVKEAVQNAVE 285
Query: 335 TLRQEGALVIDHLEIAN----VNSKNSISNDETIAMLAEFKLALNAYLKELVTSPVRSLA 390
TL+ GA V++ + + N + S I++ E + L+ F Y + SL
Sbjct: 286 TLKSLGA-VVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYH----SKEAHSLE 340
Query: 391 EVIAFNNK--FSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTN 448
E+ + F K + + LS+ D K + + ++ F+K+
Sbjct: 341 ELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQ----KVRTLIKNDFDKVFE-- 394
Query: 449 NLDALVTPRS-----------------YASTLLA----VGGFPGINVPAGYDSEGVPFGI 487
N D +V P + YA+ LL + G PGI+VP G S G P G+
Sbjct: 395 NYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCG-QSNGRPIGL 453
Query: 488 CFGGLKGTEPKLIEIAYGFE 507
F G E L +AY +E
Sbjct: 454 QFIGKPFDEKTLYRVAYQYE 473
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 132/498 (26%), Positives = 210/498 (42%), Gaps = 73/498 (14%)
Query: 39 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERK 98
R+ TI++ K ++ +L + L I RL+P + I V + E+K
Sbjct: 6 FRKLTIEE---CLKLSEEEREKLPQLSLETIKRLDPHVKAFISVR-------ENVSVEKK 55
Query: 99 VKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILG 158
K GIP+ +KDNI T M TT S L DA VV K++EAG +++G
Sbjct: 56 GK-------FWGIPVAIKDNILTLG-MRTTCASRILENYESVFDATVVKKMKEAGFVVVG 107
Query: 159 KASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWXXXXXXXXXXXXNLVAVSLGTET 218
KA+L E+A S+ F R NP+ L P +V +LG++T
Sbjct: 108 KANLDEFAMGSSTERSAFFPTR-----NPWDLERVPGGSSGGSAAAVSAGMVVAALGSDT 162
Query: 219 DGXXXXXXXXXXVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDH 278
G VVG KPT GL SR G++ D +GPI +TV DA +++ I+G D
Sbjct: 163 GGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDE 222
Query: 279 NDPATSAASKYIPHGGYKQFIK--PHGLKGKRLGVVRNPF-FNILKGSPLAQVFDHHLQT 335
ND AT+ K F+ G+ G + V + +I +G +++ F+ L+
Sbjct: 223 ND-ATTVNRKV-------DFLSEIEEGVSGMKFAVPEEIYEHDIEEG--VSERFEEALKL 272
Query: 336 LRQEGALV----IDHLEIANVNSKNSISNDETIAMLAEFK-LALNAYLKELVTSPVRSLA 390
L + GA V I H++ + V + I+ E + LA F + +KE + L
Sbjct: 273 LERLGAKVERVKIPHIKYS-VATYYVIAPAEASSNLARFDGVKYGLRIKE------KGLR 325
Query: 391 EVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNL 450
E+ E+++ + A KA + + R D +++S
Sbjct: 326 EMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKA--MKVRRKISDELNEVLS--QY 381
Query: 451 DALVTPRS----------------YASTLLAV----GGFPGINVPAGYDSEGVPFGICFG 490
DA++TP S Y + + G P I+VP G+ S +P G+
Sbjct: 382 DAILTPTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGF-SNNLPVGVQVI 440
Query: 491 GLKGTEPKLIEIAYGFEQ 508
G + + K+ IA E+
Sbjct: 441 GRRFADGKVFRIARAIEK 458
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 131/498 (26%), Positives = 204/498 (40%), Gaps = 73/498 (14%)
Query: 39 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERK 98
R+ TI++ K ++ +L + L I RL+P + I V + E+K
Sbjct: 7 FRKLTIEE---CLKLSEEEREKLPQLSLETIKRLDPHVKAFISVR-------ENVSVEKK 56
Query: 99 VKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILG 158
K GIP+ +KDNI T TT S L DA VV K +EAG +++G
Sbjct: 57 GK-------FWGIPVAIKDNILTLG-XRTTCASRILENYESVFDATVVKKXKEAGFVVVG 108
Query: 159 KASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWXXXXXXXXXXXXNLVAVSLGTET 218
KA+L E+A S+ F R NP+ L P V +LG++T
Sbjct: 109 KANLDEFAXGSSTERSAFFPTR-----NPWDLERVPGGSSGGSAAAVSAGXVVAALGSDT 163
Query: 219 DGXXXXXXXXXXVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDH 278
G VVG KPT GL SR G++ D +GPI +TV DA + + I+G D
Sbjct: 164 GGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILXEIISGRDE 223
Query: 279 NDPATSAASKYIPHGGYKQFIK--PHGLKGKRLGVVRNPF-FNILKGSPLAQVFDHHLQT 335
ND AT+ K F+ G+ G + V + +I +G +++ F+ L+
Sbjct: 224 ND-ATTVNRKV-------DFLSEIEEGVSGXKFAVPEEIYEHDIEEG--VSERFEEALKL 273
Query: 336 LRQEGALV----IDHLEIANVNSKNSISNDETIAMLAEFK-LALNAYLKELVTSPVRSLA 390
L + GA V I H++ + V + I+ E + LA F + +KE
Sbjct: 274 LERLGAKVERVKIPHIKYS-VATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREXYXKT 332
Query: 391 EVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNL 450
+ F ++ + G L +A K K + R D +++S
Sbjct: 333 RNVGFGE---EVRRRIXIGTFTLSAAYYEAYFNKAXK-----VRRKISDELNEVLS--QY 382
Query: 451 DALVTPRS----------------YASTLLAV----GGFPGINVPAGYDSEGVPFGICFG 490
DA++TP S Y + + G P I+VP G+ S +P G+
Sbjct: 383 DAILTPTSPVTAFKIGEIKDPLTYYLXDIFTIPANLAGLPAISVPFGF-SNNLPVGVQVI 441
Query: 491 GLKGTEPKLIEIAYGFEQ 508
G + + K+ IA E+
Sbjct: 442 GRRFADGKVFRIARAIEK 459
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome
pdb|3KFU|H Chain H, Crystal Structure Of The Transamidosome
Length = 471
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 135/289 (46%), Gaps = 25/289 (8%)
Query: 53 QNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAPGSLPGLHGIP 112
+ +++ ++ + YL + L+P L + +N L +A+ D PG LP L G+
Sbjct: 12 RGEVSPLEVAQAYLKRVQELDPGLGAFLSLNERLLEEAEAVD-------PG-LP-LAGLV 62
Query: 113 ILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSN 172
+ +KDNIAT+ + TTAGS L V P +A V +L+ GA++LGK +L E+ S+
Sbjct: 63 VAVKDNIATRG-LRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTE 121
Query: 173 APNGFCARGGQGKNPYVLSADPWXXXXXXXXXXXXNLVAVSLGTETDGXXXXXXXXXXVV 232
F KNP+ P +L ++LG++T G V
Sbjct: 122 HSAFFPT-----KNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVY 176
Query: 233 GIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDHNDPATSAASKYIPH 292
G+KPT G SR G+I D +GP+ R+V D ++DA AG D D A S +P
Sbjct: 177 GLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLD----ATSLDLPP 232
Query: 293 GGYKQFIKPHGLKGKRLGVVRNPFFNILKGSP-LAQVFDHHLQTLRQEG 340
+ P L RLGVVR + SP + + + L+ R+ G
Sbjct: 233 RFQEALEGP--LPPLRLGVVRE---ALAGNSPGVERALEEALKVFRELG 276
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase
Complexed With Benzamide
Length = 521
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 91/211 (43%), Gaps = 14/211 (6%)
Query: 108 LHGIPILLKDNI--ATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEW 165
L G + +KDN+ A MN GS + G RDA VVT+L AGA + GKA +
Sbjct: 88 LTGRRVAIKDNVTVAGVPMMN---GSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDL 144
Query: 166 ANFRSSNAPNGFCARGGQGKNPYVLSADPWXXXXXXXXXXXXNLVAVSLGTETDGXXXXX 225
SS F G +NP+ + V ++G + G
Sbjct: 145 CFSGSS-----FTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGAIRIP 199
Query: 226 XXXXXVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDHNDPATSA 285
VVG KPT GL G P+ D +GPI RTV DA +L IAG D NDP +
Sbjct: 200 AAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQAD 259
Query: 286 ASKYIPHGGYKQFIKPHGLKGKRLGVVRNPF 316
+ + G Y + + G R+G+VR F
Sbjct: 260 S---VEAGDYLSTLD-SDVDGLRIGIVREGF 286
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase
Length = 521
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 91/211 (43%), Gaps = 14/211 (6%)
Query: 108 LHGIPILLKDNI--ATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEW 165
L G + +KDN+ A MN GS + G RDA VVT+L AGA + GKA +
Sbjct: 88 LTGRRVAIKDNVTVAGVPMMN---GSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDL 144
Query: 166 ANFRSSNAPNGFCARGGQGKNPYVLSADPWXXXXXXXXXXXXNLVAVSLGTETDGXXXXX 225
SS F G +NP+ + V ++G + G
Sbjct: 145 CFSGSS-----FTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIP 199
Query: 226 XXXXXVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDHNDPATSA 285
VVG KPT GL G P+ D +GPI RTV DA +L IAG D NDP +
Sbjct: 200 AAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAGRDGNDPRQAD 259
Query: 286 ASKYIPHGGYKQFIKPHGLKGKRLGVVRNPF 316
+ + G Y + + G R+G+VR F
Sbjct: 260 S---VEAGDYLSTLD-SDVDGLRIGIVREGF 286
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 112/262 (42%), Gaps = 56/262 (21%)
Query: 108 LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWAN 167
LHG+P+ +KD K M T AG+ A L +P +A V +LREAGA++ K + E
Sbjct: 65 LHGLPLTVKDLFPVKG-MPTRAGTKAPL-PPLPEEARAVRRLREAGALLFAKTNXHE--- 119
Query: 168 FRSSNAPNGFCARGGQGKNPYVL----SADPWXXXXXXXXXXXXNLVAV-------SLGT 216
A G G+NP+ + DP + VAV SLGT
Sbjct: 120 ----------IALGITGENPWTGPVRNAVDP---SRQAGGSSGGSAVAVALGIGLASLGT 166
Query: 217 ETDGXXXXXXXXXXVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGF 276
+T G VVG KP+ G S G +PL+ D GP+ R+V DA ++ + +AG
Sbjct: 167 DTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAG- 225
Query: 277 DHNDPATSAASKYIPHGGYKQ--FIKPHGLKGKRLGV-VRNPFFNILK------------ 321
+ IP G + F P RLGV VR F +L+
Sbjct: 226 -----------ESIPLEGVQNPVFGVPLDFLEGRLGVEVRKAFTRLLEDLPALRAEVREV 274
Query: 322 GSPLAQVFDHHLQTLRQEGALV 343
PL V++ + + +R E A +
Sbjct: 275 SLPLEGVYEVYTRLVRYEAARI 296
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 92/199 (46%), Gaps = 12/199 (6%)
Query: 101 APGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVP-RDAGVVTKLREAGAIILGK 159
+P + L+G+P +KDNI + +A A + P RDA VV +LR AGAI+LGK
Sbjct: 88 SPATGKPLYGVPFAVKDNIDVA-GLPCSAACPAF--TYEPDRDATVVARLRAAGAIVLGK 144
Query: 160 ASLSEWAN-FRSSNAPNGFCARGGQGKNPYVLSADPWXXXXXXXXXXXXNLVAVSLGTET 218
+L ++A + +P F A Y+ LVA SLGT+T
Sbjct: 145 TNLDQFATGLVGTRSP--FGAPRCVFDQDYISGG----SSSGSAVAVAAGLVAFSLGTDT 198
Query: 219 DGXXXXXXXXXXVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDH 278
G +VG+KPT GL S +GV+P D V +VA+ + G+D
Sbjct: 199 AGSGRVPAAFNNLVGVKPTKGLLSTSGVVPACRSLDCVTVFAASVAEGTLIRRIAEGYDA 258
Query: 279 NDPATSAASK-YIPHGGYK 296
DP + + K +PH G +
Sbjct: 259 ADPYSRPSQKRRLPHVGLR 277
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 112/499 (22%), Positives = 191/499 (38%), Gaps = 84/499 (16%)
Query: 52 KQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAPGSLPGLHGI 111
+ +++ +L+E + + +NP ++ VI + +KA E ++ S P G+
Sbjct: 18 RSGEISRTELLEATIAHVQAVNPEINAVI------IPLFEKARRESEL---ASGP-FAGV 67
Query: 112 PILLKD-NIATKDKMNTTA-GSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFR 169
P LLKD + ++ +NT++ G DA V ++R AG ++LGK + E N +
Sbjct: 68 PYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGN-Q 126
Query: 170 SSNAPNGFCARGGQGKNPYVLSADPWXXXXXXXXXXXXNLVAVSLGTETDGXXXXXXXXX 229
+ P + G +NP+ L L V+ G + G
Sbjct: 127 VTTEPEAW----GATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGSVRIPASVC 182
Query: 230 XVVGIKPTVGLTSRAGVIPLTPRQDSV------GPICRTVADAVYVLDAIAGFDHNDPAT 283
VVG+KPT G S PL D+V G R+V D +LD ++G D
Sbjct: 183 GVVGLKPTRGRISPG---PLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGD--- 236
Query: 284 SAASKYIPHGGYKQFIKPHGLKGKRLGVVRNP---FFNILKGSPLA-------------- 326
F P + G+ NP +L +P+
Sbjct: 237 -------------TFCAPTASRPYAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARG 283
Query: 327 ----------QVFDHHLQTLRQEGALVIDHLEIANVNSKNSIS-NDETIAM-LAEFKLAL 374
V D + + L + + + D+ I +V I N E I L E +
Sbjct: 284 AAAALAALGHDVNDAYPEAL-GDRSFLKDYSTICDVAIAREIERNGELIGRPLTEDDVEW 342
Query: 375 NAY--LKELVTSPVRSLAEVIAFNNKFS-DLEKIKEYGQDLLLSAEATDGIGKTEKAAIL 431
++ +K R+ A + ++ +E+ E G DLL+ T +T + L
Sbjct: 343 TSWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLILPTVTR---QTPEIGEL 399
Query: 432 NLERFTR-DGFEKLMSTNNLDALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFG 490
L + T +G + + +L L + V G P I++P G S+G+P G+
Sbjct: 400 MLAKGTDLEGRQSAFISGSLQMLAF-----TVPFNVSGQPAISLPIGMSSDGMPIGVQIV 454
Query: 491 GLKGTEPKLIEIAYGFEQA 509
G E L+++A E A
Sbjct: 455 AAYGREDLLLQVAAQLEGA 473
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 112/499 (22%), Positives = 191/499 (38%), Gaps = 84/499 (16%)
Query: 52 KQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAPGSLPGLHGI 111
+ +++ +L+E + + +NP ++ VI + +KA E ++ S P G+
Sbjct: 18 RSGEISRTELLEATIAHVQAVNPEINAVI------IPLFEKARRESEL---ASGP-FAGV 67
Query: 112 PILLKD-NIATKDKMNTTA-GSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFR 169
P LLKD + ++ +NT++ G DA V ++R AG ++LGK + E N +
Sbjct: 68 PYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGN-Q 126
Query: 170 SSNAPNGFCARGGQGKNPYVLSADPWXXXXXXXXXXXXNLVAVSLGTETDGXXXXXXXXX 229
+ P + G +NP+ L L V+ G + G
Sbjct: 127 VTTEPEAW----GATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVC 182
Query: 230 XVVGIKPTVGLTSRAGVIPLTPRQDSV------GPICRTVADAVYVLDAIAGFDHNDPAT 283
VVG+KPT G S PL D+V G R+V D +LD ++G D
Sbjct: 183 GVVGLKPTRGRISPG---PLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGD--- 236
Query: 284 SAASKYIPHGGYKQFIKPHGLKGKRLGVVRNP---FFNILKGSPLA-------------- 326
F P + G+ NP +L +P+
Sbjct: 237 -------------TFCAPTASRPYAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARG 283
Query: 327 ----------QVFDHHLQTLRQEGALVIDHLEIANVNSKNSIS-NDETIAM-LAEFKLAL 374
V D + + L + + + D+ I +V I N E I L E +
Sbjct: 284 AAAALAALGHDVNDAYPEAL-GDRSFLKDYSTICDVAIAREIERNGELIGRPLTEDDVEW 342
Query: 375 NAY--LKELVTSPVRSLAEVIAFNNKFS-DLEKIKEYGQDLLLSAEATDGIGKTEKAAIL 431
++ +K R+ A + ++ +E+ E G DLL+ T +T + L
Sbjct: 343 TSWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLILPTVTR---QTPEIGEL 399
Query: 432 NLERFTR-DGFEKLMSTNNLDALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFG 490
L + T +G + + +L L + V G P I++P G S+G+P G+
Sbjct: 400 MLAKGTDLEGRQSAFISGSLQMLAF-----TVPFNVSGQPAISLPIGMSSDGMPIGVQIV 454
Query: 491 GLKGTEPKLIEIAYGFEQA 509
G E L+++A E A
Sbjct: 455 AAYGREDLLLQVAAQLEGA 473
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1OBL|B Chain B, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 87/240 (36%), Gaps = 34/240 (14%)
Query: 77 HGVIEVNPDALSQADKADYERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLG 136
H IE + + D + +A G L GI + +KD I T + M T GS G
Sbjct: 26 HAAIEAREKEVHAFVRHDKSARAQASGPL---RGIAVGIKDIIDTAN-MPTEMGSEIYRG 81
Query: 137 SVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWX 196
DA VV L+ AGA I+GK + + +A S P NP+ P
Sbjct: 82 WQPRSDAPVVMMLKRAGATIIGKTTTTAFA----SRDPTATL-------NPHNTGHSPGG 130
Query: 197 XXXXXXXXXXXNLVAVSLGTETDGXXXXXXXXXXVVGIKPTVGLTSRAGVIPLTPRQDSV 256
++ ++LGT+T G IKP+ + GV + D+V
Sbjct: 131 SSAGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTV 190
Query: 257 GPICRTVADAVYVLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPF 316
G D L A+ G S S +P K R+GVVR F
Sbjct: 191 GLFGARAEDLARGLLAMTG-------RSEFSGIVP------------AKAPRIGVVRQEF 231
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9O|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9P|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1O9P|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 87/240 (36%), Gaps = 34/240 (14%)
Query: 77 HGVIEVNPDALSQADKADYERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLG 136
H IE + + D + +A G L GI + +KD I T + M T GS G
Sbjct: 26 HAAIEAREKEVHAFVRHDKSARAQASGPL---RGIAVGIKDIIDTAN-MPTEMGSEIYRG 81
Query: 137 SVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWX 196
DA VV L+ AGA I+GK + + +A S P NP+ P
Sbjct: 82 WQPRSDAPVVMMLKRAGATIIGKTTTTAFA----SRDPTATL-------NPHNTGHSPGG 130
Query: 197 XXXXXXXXXXXNLVAVSLGTETDGXXXXXXXXXXVVGIKPTVGLTSRAGVIPLTPRQDSV 256
++ ++LGT+T G IKP+ + GV + D+V
Sbjct: 131 ASSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTV 190
Query: 257 GPICRTVADAVYVLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPF 316
G D L A+ G S S +P K R+GVVR F
Sbjct: 191 GLFGARAEDLARGLLAMTG-------RSEFSGIVP------------AKAPRIGVVRQEF 231
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBI|B Chain B, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 87/240 (36%), Gaps = 34/240 (14%)
Query: 77 HGVIEVNPDALSQADKADYERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLG 136
H IE + + D + +A G L GI + +KD I T + M T GS G
Sbjct: 26 HAAIEAREKEVHAFVRHDKSARAQASGPL---RGIAVGIKDIIDTAN-MPTEMGSEIYRG 81
Query: 137 SVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWX 196
DA VV L+ AGA I+GK + + +A S P NP+ P
Sbjct: 82 WQPRSDAPVVMMLKRAGATIIGKTTTTAFA----SRDPTATL-------NPHNTGHSPGA 130
Query: 197 XXXXXXXXXXXNLVAVSLGTETDGXXXXXXXXXXVVGIKPTVGLTSRAGVIPLTPRQDSV 256
++ ++LGT+T G IKP+ + GV + D+V
Sbjct: 131 SSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTV 190
Query: 257 GPICRTVADAVYVLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPF 316
G D L A+ G S S +P K R+GVVR F
Sbjct: 191 GLFGARAEDLARGLLAMTG-------RSEFSGIVP------------AKAPRIGVVRQEF 231
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBK|B Chain B, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 87/240 (36%), Gaps = 34/240 (14%)
Query: 77 HGVIEVNPDALSQADKADYERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLG 136
H IE + + D + +A G L GI + +KD I T + M T GS G
Sbjct: 26 HAAIEAREKEVHAFVRHDKSARAQASGPL---RGIAVGIKDIIDTAN-MPTEMGSEIYRG 81
Query: 137 SVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWX 196
DA VV L+ AGA I+GK + + +A S P NP+ P
Sbjct: 82 WQPRSDAPVVMMLKRAGATIIGKTTTTAFA----SRDPTATL-------NPHNTGHSPGG 130
Query: 197 XXXXXXXXXXXNLVAVSLGTETDGXXXXXXXXXXVVGIKPTVGLTSRAGVIPLTPRQDSV 256
++ ++LGT+T G IKP+ + GV + D+V
Sbjct: 131 SSSGSAAAVGAGMIPLALGTQTGGSVIQPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTV 190
Query: 257 GPICRTVADAVYVLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPF 316
G D L A+ G S S +P K R+GVVR F
Sbjct: 191 GLFGARAEDLARGLLAMTG-------RSEFSGIVP------------AKAPRIGVVRQEF 231
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCK|B Chain B, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCL|A Chain A, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCL|B Chain B, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCM|A Chain A, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
pdb|1OCM|B Chain B, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
Length = 412
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 87/240 (36%), Gaps = 34/240 (14%)
Query: 77 HGVIEVNPDALSQADKADYERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLG 136
H IE + + D + +A G L GI + +KD I T + M T GS G
Sbjct: 26 HAAIEAREKEVHAFVRHDKSARAQASGPL---RGIAVGIKDIIDTAN-MPTEMGSEIYRG 81
Query: 137 SVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWX 196
DA VV L+ AGA I+GK + + +A S P NP+ P
Sbjct: 82 WQPRSDAPVVMMLKRAGATIIGKTTTTAFA----SRDPTATL-------NPHNTGHSPGG 130
Query: 197 XXXXXXXXXXXNLVAVSLGTETDGXXXXXXXXXXVVGIKPTVGLTSRAGVIPLTPRQDSV 256
++ ++LGT+T G IKP+ + GV + D+V
Sbjct: 131 SSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTV 190
Query: 257 GPICRTVADAVYVLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPF 316
G D L A+ G S S +P K R+GVVR F
Sbjct: 191 GLFGARAEDLARGLLAMTG-------RSEFSGIVP------------AKAPRIGVVRQEF 231
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9Q|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 88/240 (36%), Gaps = 34/240 (14%)
Query: 77 HGVIEVNPDALSQADKADYERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLG 136
H IE + + D + +A G L GI + +KD I T + M T GS G
Sbjct: 26 HAAIEAREKEVHAFVRHDKSARAQASGPL---RGIAVGIKDIIDTAN-MPTEMGSEIYRG 81
Query: 137 SVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWX 196
DA VV L+ AGA I+GK + + +A S P NP+ P
Sbjct: 82 WQPRSDAPVVMMLKRAGATIIGKTTTTAFA----SRDPTATL-------NPHNTGHSPGG 130
Query: 197 XXXXXXXXXXXNLVAVSLGTETDGXXXXXXXXXXVVGIKPTVGLTSRAGVIPLTPRQDSV 256
++ ++LGT+T G IKP+ + GV + D+V
Sbjct: 131 SSSGSAAAVGAGMIPLALGTQTGGXVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTV 190
Query: 257 GPICRTVADAVYVLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPF 316
G D L A+ G S S +P K R+GVVR F
Sbjct: 191 GLFGARAEDLARGLLAMTG-------RSEFSGIVP------------AKAPRIGVVRQEF 231
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBJ|B Chain B, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 86/240 (35%), Gaps = 34/240 (14%)
Query: 77 HGVIEVNPDALSQADKADYERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLG 136
H IE + + D + +A G L GI + +KD I T + M T GS G
Sbjct: 26 HAAIEAREKEVHAFVRHDKSARAQASGPL---RGIAVGIKDIIDTAN-MPTEMGSEIYRG 81
Query: 137 SVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWX 196
DA VV L+ AGA I+GK + + +A S P NP+ P
Sbjct: 82 WQPRSDAPVVMMLKRAGATIIGKTTTTAFA----SRDPTATL-------NPHNTGHSPGG 130
Query: 197 XXXXXXXXXXXNLVAVSLGTETDGXXXXXXXXXXVVGIKPTVGLTSRAGVIPLTPRQDSV 256
++ ++LG +T G IKP+ + GV + D+V
Sbjct: 131 SSSGSAAAVGAGMIPLALGAQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTV 190
Query: 257 GPICRTVADAVYVLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPF 316
G D L A+ G S S +P K R+GVVR F
Sbjct: 191 GLFGARAEDLARGLLAMTG-------RSEFSGIVP------------AKAPRIGVVRQEF 231
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9N|B Chain B, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 86/240 (35%), Gaps = 34/240 (14%)
Query: 77 HGVIEVNPDALSQADKADYERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLG 136
H IE + + D + +A G L GI + + D I T + M T GS G
Sbjct: 26 HAAIEAREKEVHAFVRHDKSARAQASGPL---RGIAVGIADIIDTAN-MPTEMGSEIYRG 81
Query: 137 SVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWX 196
DA VV L+ AGA I+GK + + +A S P NP+ P
Sbjct: 82 WQPRSDAPVVMMLKRAGATIIGKTTTTAFA----SRDPTATL-------NPHNTGHSPGG 130
Query: 197 XXXXXXXXXXXNLVAVSLGTETDGXXXXXXXXXXVVGIKPTVGLTSRAGVIPLTPRQDSV 256
++ ++LGT+T G IKP+ + GV + D+V
Sbjct: 131 SSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTV 190
Query: 257 GPICRTVADAVYVLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPF 316
G D L A+ G S S +P K R+GVVR F
Sbjct: 191 GLFGARAEDLARGLLAMTG-------RSEFSGIVP------------AKAPRIGVVRQEF 231
>pdb|1OQS|B Chain B, Crystal Structure Of Rv4RV7 COMPLEX
pdb|1OQS|D Chain D, Crystal Structure Of Rv4RV7 COMPLEX
pdb|1OQS|F Chain F, Crystal Structure Of Rv4RV7 COMPLEX
pdb|1OQS|H Chain H, Crystal Structure Of Rv4RV7 COMPLEX
Length = 122
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 488 CFGGLKGTEPKLIEIAYGFEQA 509
C+GG+KG PKL +Y F++
Sbjct: 50 CYGGVKGCNPKLAIYSYSFQRG 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,354,545
Number of Sequences: 62578
Number of extensions: 590846
Number of successful extensions: 1385
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1325
Number of HSP's gapped (non-prelim): 36
length of query: 520
length of database: 14,973,337
effective HSP length: 103
effective length of query: 417
effective length of database: 8,527,803
effective search space: 3556093851
effective search space used: 3556093851
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)