Query 009991
Match_columns 520
No_of_seqs 311 out of 1331
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 17:28:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009991.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009991hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m22_A Peptide amidase, PAM; e 100.0 3E-106 1E-110 860.3 46.2 471 35-520 4-494 (503)
2 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 1E-104 4E-109 844.3 39.8 450 38-515 2-481 (485)
3 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 8E-103 3E-107 827.0 35.2 447 39-519 2-478 (478)
4 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 2E-101 8E-106 813.7 33.6 435 42-515 1-464 (471)
5 2dc0_A Probable amidase; struc 100.0 2E-100 6E-105 801.0 37.4 405 42-510 1-433 (434)
6 3a2q_A 6-aminohexanoate-cyclic 100.0 6E-100 2E-104 810.7 38.4 431 36-513 3-477 (493)
7 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 2.1E-99 7E-104 803.0 30.2 439 35-518 3-469 (476)
8 3ppm_A Fatty-acid amide hydrol 100.0 3.9E-96 1E-100 785.6 33.4 452 28-517 57-573 (573)
9 1o9p_A Malonamidase E2; malona 100.0 4.8E-95 1.6E-99 754.9 36.0 393 42-511 2-411 (414)
10 3a1k_A Amidase; AS family enzy 100.0 4.2E-95 1.4E-99 774.8 17.6 452 42-515 13-507 (521)
11 3shg_B VBHA; ampylation, adeny 53.0 18 0.00061 25.6 4.0 28 44-71 32-59 (61)
12 1zrj_A E1B-55KDA-associated pr 32.7 27 0.00093 23.8 2.4 39 34-72 5-43 (50)
13 3obf_A Putative transcriptiona 27.9 68 0.0023 27.6 4.9 48 466-514 118-175 (176)
14 1tf1_A Negative regulator of a 27.0 64 0.0022 28.5 4.6 50 466-516 139-198 (198)
15 2do1_A Nuclear protein HCC-1; 26.5 27 0.00092 24.4 1.5 39 34-72 5-43 (55)
16 3r4k_A Transcriptional regulat 21.1 1.3E+02 0.0044 27.9 5.7 52 466-518 193-254 (260)
No 1
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=3.1e-106 Score=860.31 Aligned_cols=471 Identities=44% Similarity=0.725 Sum_probs=397.3
Q ss_pred CcccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhC---CCccEEEEeChhHHHHHHHHhHHHHhhCCCCCCCcccc
Q 009991 35 HAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLN---PLLHGVIEVNPDALSQADKADYERKVKAPGSLPGLHGI 111 (520)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~---~~lna~~~~~~~al~~A~~~d~~~~~~~g~~~gpL~Gv 111 (520)
..|++.++++.+|+++|++|++|++|++++||+||+++| +.+|||+++++||+++|+++|+++ ++|+..||||||
T Consensus 4 ~~~~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~Al~~A~~~d~~~--~~g~~~gpL~Gv 81 (503)
T 1m22_A 4 VPFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAERDRER--RDGRLRGPLHGI 81 (503)
T ss_dssp -CCTTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTTHHHHHHHHHHHH--HTTCCCSTTTTC
T ss_pred CCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHHHHHHHHHH--HcCCCCCCcCCc
Confidence 467889999999999999999999999999999999999 999999999988999999999987 788888999999
Q ss_pred eeeeeccccccCCccccccchhhcCCCCCCChHHHHHHHHcCCeEEEecChhhhhhccCCCCCCCccCCCCCCCCCCCCC
Q 009991 112 PILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLS 191 (520)
Q Consensus 112 Pi~vKD~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~rLr~aGaii~GkTn~~E~a~~~~~~~~~~~n~~~G~t~NP~~~~ 191 (520)
||+|||||+++| ++||+||..+.++++ +||++|+|||+||||++||||||||+++.++.+.+++|++||+|+||||++
T Consensus 82 Pi~vKD~~~v~G-~~Tt~Gs~~~~~~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~ 159 (503)
T 1m22_A 82 PLLLKDNINAAP-MATSAGSLALQGFRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRIS 159 (503)
T ss_dssp EEEEETTBCCTT-SCCCTTCGGGTTCCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTT
T ss_pred eeEeecccccCC-CCcCCCCHhhcCCCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCC
Confidence 999999999997 999999999999999 999999999999999999999999998665556789999999999999999
Q ss_pred CCCCCCChhHHHHHhcCCcceeeccccCCccccccccCCceeecCCCCcccCCCCCCCCCCCcccccccCCHHHHHHHHH
Q 009991 192 ADPWGSSSGSAISVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLD 271 (520)
Q Consensus 192 ~~pGGSSgGsAaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~Gp~aRsv~D~a~~~~ 271 (520)
|+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|++++++
T Consensus 160 ~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~l~ 239 (503)
T 1m22_A 160 HSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLT 239 (503)
T ss_dssp BCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCccccccCCCCCCccccccCCCCCCcEEEEECCCccCCCCChHHHHHHHHHHHHHHHCCCEEEeecccCc
Q 009991 272 AIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGALVIDHLEIAN 351 (520)
Q Consensus 272 ~l~g~d~~d~~~~~~~~~~p~~~~~~~l~~~~~~~lRIgv~~~~~~~~~~d~~v~~a~~~a~~~L~~~G~~vve~~~~p~ 351 (520)
+|.|+|+.|+.+...+. .+..+|...+....++++||||+.+++ . ++++++++++++++.|+++||+|++ +++|.
T Consensus 240 vl~g~d~~d~~~~~~~~-~~~~~~~~~~~~~~~~~lrIgv~~~~~-~--~~~~v~~a~~~a~~~L~~~G~~v~~-~~~p~ 314 (503)
T 1m22_A 240 AIAGRDDADPATATMPG-RAVYDYTARLDPQGLRGKRIGLLQTPL-L--KYRGMPPLIEQAATELRRAGAVVVP-VELPN 314 (503)
T ss_dssp HHCCCCTTCGGGGGCTT-CCCCCGGGGCCTTTTTTCEEEEECSGG-G--GSTTHHHHHHHHHHHHHHTTCEEEE-ECCTT
T ss_pred HHcCCCCCCcccccccc-ccccchhhhccccCCCCCEEEEECccc-c--CCHHHHHHHHHHHHHHHHcCCEEEE-eCCCc
Confidence 99999999976543311 011245544433356889999998754 2 6899999999999999999999987 68776
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHhccCCcccHHHHHHhhccccchHHHHhhcHHHHHhhhhcCCCc-HHHHHHH
Q 009991 352 VNSKNSISNDETIAMLAEFKLALNAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIG-KTEKAAI 430 (520)
Q Consensus 352 ~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~ 430 (520)
++++. ..+..++.+|+..++..|+.... .+.+.+.+++.+++.++. +....++++++........++ .+|.++.
T Consensus 315 ~~~~~---~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 389 (503)
T 1m22_A 315 QGAWA---EAERTLLLYEFKAGLERYFNTHR-APLRSLADLIAFNQAHSK-QELGLFGQELLVEADATAGLADPAYIRAR 389 (503)
T ss_dssp TTTTH---HHHHHHHHHHHHHHHHHHHHHTT-CSCCSHHHHHHHHHHTHH-HHSSSSCCHHHHHHHTCCCTTCHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHhcC-cccccHHHHHHHhhhcch-hcccccCHHHHHHHHhcCCCCHHHHHHHH
Confidence 54332 23456677888888888887653 344566666554322210 112234445544444443333 4555555
Q ss_pred HHHHHHHHHH-HHHHHhhCCCCEEEecCcc---------------hhhhhhhcCCCeeeeccCCCCCCCceeEEEEccCC
Q 009991 431 LNLERFTRDG-FEKLMSTNNLDALVTPRSY---------------ASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKG 494 (520)
Q Consensus 431 ~~~~~~~~~~-~~~~~~~~~~D~ll~Pt~~---------------~t~~~nl~G~PaisvP~G~~~~GlPvGlQlvg~~~ 494 (520)
++++++.++. +.++|+++++|+||+|+++ +|.+||++|+|+||||+|++ +|||+||||||++|
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~~a~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvqlvg~~~ 468 (503)
T 1m22_A 390 SDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMGQI-DGLPVGLLFMGTAW 468 (503)
T ss_dssp HHHHHHHTTTTHHHHHHHTTCSEEEEECCCCCCBTTC---CCTTCCHHHHHHHTCCEEEEEEEEE-TTEEEEEEEECSTT
T ss_pred HHHHHHHHHHHHHHHHhhcCCCEEEeCCCccCcccccccCcccccccccchhhCCCeEEeccccC-CCCCeEEEEECCCC
Confidence 5555554442 9999987779999999863 57889999999999999987 89999999999999
Q ss_pred ChHHHHHHHHHHHHHcCCCCCCCCCC
Q 009991 495 TEPKLIEIAYGFEQATKIRKPPSFKS 520 (520)
Q Consensus 495 ~D~~LL~~A~~lE~~~~~~~~P~~~~ 520 (520)
+|++||++|++||++++|+++|.+.|
T Consensus 469 ~d~~lL~~A~~~E~~~~~~~~p~~~~ 494 (503)
T 1m22_A 469 SEPKLIEMAYAYEQRTRARRPPHFDT 494 (503)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred ChHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 99999999999999999999998876
No 2
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=1.2e-104 Score=844.32 Aligned_cols=450 Identities=27% Similarity=0.416 Sum_probs=370.8
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCccEEEEeChh-HHHHHHHHhHHHHhhCCCCCCCcccceeeee
Q 009991 38 PIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAPGSLPGLHGIPILLK 116 (520)
Q Consensus 38 ~~~~~~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vK 116 (520)
++.++|+.+|+++|++|++|++||+++||+||+++|+.+|||+++++| |+++|+++|+++. ++|+. ||||||||+||
T Consensus 2 ~l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~-~~g~~-gpL~GvPi~vK 79 (485)
T 3ip4_A 2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQA-KDQMD-GKLFGIPMGIK 79 (485)
T ss_dssp CGGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHH-TTCCC-STTTTCEEEEE
T ss_pred CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHH-hcCCC-CCcCCCEEEEE
Confidence 578899999999999999999999999999999999999999999999 9999999998752 46777 99999999999
Q ss_pred ccccccCCccccccchhhcCCCCCCChHHHHHHHHcCCeEEEecChhhhhhccCCCCCCCccCCCCCCCCCCCCCCCCCC
Q 009991 117 DNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWG 196 (520)
Q Consensus 117 D~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~rLr~aGaii~GkTn~~E~a~~~~~~~~~~~n~~~G~t~NP~~~~~~pGG 196 (520)
|||+++| ++||+||..+.+++|.+||++|+|||+||||++||||||||++ +..++|++||+|+||||++|+|||
T Consensus 80 D~~~v~G-~~tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~-----~~~t~n~~~G~t~NP~~~~~~pGG 153 (485)
T 3ip4_A 80 DNIITNG-LETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAM-----GGSTETSYFKKTVNPFDHKAVPGG 153 (485)
T ss_dssp TTBCBTT-BCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGC-----CSSSTTCSSCCCCBTTBTTBCCCS
T ss_pred cCcccCC-CccCCCChhhcCCCCCCCcHHHHHHHHCCCEEEEecCCccccc-----CCCCCCCCCCCcCCccccCcCCCC
Confidence 9999996 9999999999999999999999999999999999999999998 678899999999999999999999
Q ss_pred CChhHHHHHhcCCcceeeccccCCccccccccCCceeecCCCCcccCCCCCCCCCCCcccccccCCHHHHHHHHHHHhCC
Q 009991 197 SSSGSAISVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGF 276 (520)
Q Consensus 197 SSgGsAaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~Gp~aRsv~D~a~~~~~l~g~ 276 (520)
||||||||||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.|+
T Consensus 154 SSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~ 233 (485)
T 3ip4_A 154 SSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGA 233 (485)
T ss_dssp SSHHHHHHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSC
T ss_pred CccHHHHHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCCCCCCccccccCCCCCCcEEEEECCCccCCCCChHHHHHHHHHHHHHHHCCCEEEeecccCcccccc
Q 009991 277 DHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGALVIDHLEIANVNSKN 356 (520)
Q Consensus 277 d~~d~~~~~~~~~~p~~~~~~~l~~~~~~~lRIgv~~~~~~~~~~d~~v~~a~~~a~~~L~~~G~~vve~~~~p~~~~~~ 356 (520)
|+.|+.+... |..+|...+. .+++++||||+.+++.. .++++++++++++++.|+++||+|++ +++|.++...
T Consensus 234 d~~d~~~~~~----~~~~~~~~~~-~~~~~lrigv~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~p~~~~~~ 306 (485)
T 3ip4_A 234 DVNDSTSAPV----DDVDFTSEIG-KDIKGLKVALPKEYLGE-GVADDVKEAVQNAVETLKSLGAVVEE-VSLPNTKFGI 306 (485)
T ss_dssp CTTCTTSCCC----CCCCCSTTTT-CCCTTCEEEEEGGGGST-TSCHHHHHHHHHHHHHHHHTTCEEEE-ECCTTGGGHH
T ss_pred Cccccccccc----Cccchhhhhc-cCccCcEEEEECCcccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCcHHHHH
Confidence 9999766543 3234554443 36789999999876543 68999999999999999999999987 6887665432
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhcc---CCcccHHHHHHhhccccchHHHHhhcHHHHHh---hh--hcCCCcHHHHH
Q 009991 357 SISNDETIAMLAEFKLALNAYLKELVT---SPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLS---AE--ATDGIGKTEKA 428 (520)
Q Consensus 357 ~~~~~~~~~~~~e~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~ 428 (520)
..+..++..|+..++..|...... ....++.++....+ ...+++++... .. ........++.
T Consensus 307 ---~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 376 (485)
T 3ip4_A 307 ---PSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSR-------SEGFGKEVKRRIFLGTFALSSGYYDAYYK 376 (485)
T ss_dssp ---HHHHHHHHHHHHHHTTTCSSSSSSCCCTTCCSHHHHHHHHH-------HHHSCHHHHHHHHHHHHHHSTTTTTTTHH
T ss_pred ---HHHHHHHHHHHHHHHHhhhhhhccccccccccHHHHHHhhh-------hhhcCHHHHHHHHhccccccchhhHHHHH
Confidence 234456667776655433211100 11223333332111 11222222111 00 01111112233
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCEEEecCcc---------------------hhhhhhhcCCCeeeeccCCCCCCCceeE
Q 009991 429 AILNLERFTRDGFEKLMSTNNLDALVTPRSY---------------------ASTLLAVGGFPGINVPAGYDSEGVPFGI 487 (520)
Q Consensus 429 a~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~---------------------~t~~~nl~G~PaisvP~G~~~~GlPvGl 487 (520)
...+.+..+++.+.++|+ ++|+||+|+++ ||.+||++|+|++|||+|++ +|||+||
T Consensus 377 ~a~~~r~~~~~~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGl 453 (485)
T 3ip4_A 377 KSQKVRTLIKNDFDKVFE--NYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS-NGRPIGL 453 (485)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCSEEEEESSSSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHh--cCCEEEeCCCCCCCCCcccccCChHHHhhhhhhhhhhHhhCCCeEEEeCCcC-CCCCEeE
Confidence 344455556677999997 59999999964 46689999999999999998 8999999
Q ss_pred EEEccCCChHHHHHHHHHHHHHcCCCCC
Q 009991 488 CFGGLKGTEPKLIEIAYGFEQATKIRKP 515 (520)
Q Consensus 488 Qlvg~~~~D~~LL~~A~~lE~~~~~~~~ 515 (520)
||+|++|+|++||++|++||++++|+.+
T Consensus 454 qlvg~~~~d~~lL~~A~~lE~~~~~~~~ 481 (485)
T 3ip4_A 454 QFIGKPFDEKTLYRVAYQYETQYNLHDV 481 (485)
T ss_dssp EEECSTTCHHHHHHHHHHHHHHSCCTTT
T ss_pred EEEcCCCCHHHHHHHHHHHHHhcCcccC
Confidence 9999999999999999999999998643
No 3
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=7.7e-103 Score=826.96 Aligned_cols=447 Identities=27% Similarity=0.394 Sum_probs=368.2
Q ss_pred ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCccEEEEeChh-HHHHHHHHhHHHHhhCCCCCCCcccceeeeec
Q 009991 39 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAPGSLPGLHGIPILLKD 117 (520)
Q Consensus 39 ~~~~~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD 117 (520)
+.++|+.+|+++|++|++|++|++++||+||+++|+.+|||+++++| |+++|+++|++ .||||||||+|||
T Consensus 2 l~~~sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~--------~gpL~GvPi~vKD 73 (478)
T 3h0l_A 2 LWKKSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKER--------ELPLFGIPIAVKD 73 (478)
T ss_dssp CTTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCT--------TSTTTTCEEEEET
T ss_pred CCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchh--------cCCcCCceEEEEc
Confidence 56789999999999999999999999999999999999999999998 99999987742 6899999999999
Q ss_pred cccccCCccccccchhhcCCCCCCChHHHHHHHHcCCeEEEecChhhhhhccCCCCCCCccCCCCCCCCCCCCCCCCCCC
Q 009991 118 NIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGS 197 (520)
Q Consensus 118 ~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~rLr~aGaii~GkTn~~E~a~~~~~~~~~~~n~~~G~t~NP~~~~~~pGGS 197 (520)
||+++| ++||+||..+.++++.+||++|+|||+||||++||||||||++ +..+.|++||+|+||||++|+||||
T Consensus 74 ~~~~~G-~~tt~Gs~~~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~-----~~~~~n~~~G~t~NP~~~~~~~GGS 147 (478)
T 3h0l_A 74 NILVEG-EKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAM-----GSSTEYSAFFPTKNPWDLERVPGGS 147 (478)
T ss_dssp TBCCTT-SBCCTTCGGGTTCBCSSCCHHHHHHHHTTCEEEEEECCSGGGC-----CSSSTTCSSCCCCCTTCTTBCCCSS
T ss_pred CccCCC-CCcCCcCHhhcCCCCCCCHHHHHHHHHCCCEEEEEeCchhhhc-----CCCCCCCCCCCcCCCccCCCCCCcc
Confidence 999996 9999999999999999999999999999999999999999998 6788999999999999999999999
Q ss_pred ChhHHHHHhcCCcceeeccccCCccccccccCCceeecCCCCcccCCCCCCCCCCCcccccccCCHHHHHHHHHHHhCCC
Q 009991 198 SSGSAISVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFD 277 (520)
Q Consensus 198 SgGsAaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~Gp~aRsv~D~a~~~~~l~g~d 277 (520)
||||||+||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.|+|
T Consensus 148 SgGsaaaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~vl~g~d 227 (478)
T 3h0l_A 148 SGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWD 227 (478)
T ss_dssp SHHHHHHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCC
T ss_pred hHHHHHHHHCCCCceeeecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCCCCCCccccccCCCCCCcEEEEECCCccCCCCChHHHHHHHHHHHHHHHCCCEEEeecccCccccccc
Q 009991 278 HNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGALVIDHLEIANVNSKNS 357 (520)
Q Consensus 278 ~~d~~~~~~~~~~p~~~~~~~l~~~~~~~lRIgv~~~~~~~~~~d~~v~~a~~~a~~~L~~~G~~vve~~~~p~~~~~~~ 357 (520)
+.|+.+... |..+|...+. .+++++||||+.+++.. .++++++++++++++.|+++||+|++ +++|.++...
T Consensus 228 ~~d~~~~~~----p~~~~~~~~~-~~~~~lrIgv~~~~~~~-~~~p~v~~a~~~a~~~L~~~G~~v~~-v~~p~~~~~~- 299 (478)
T 3h0l_A 228 EKDSTSAKV----PVPEWSEEVK-KEVKGLKIGLPKEFFEY-ELQPQVKEAFENFIKELEKEGFEIKE-VSLPHVKYSI- 299 (478)
T ss_dssp TTCTTSCCC----CCCCHHHHTT-CCCTTCEEEEEGGGGGS-CCCHHHHHHHHHHHHHHHHTTCEEEE-ECCTTGGGHH-
T ss_pred ccccccccc----Cccchhhhhc-cCCCCCEEEEECCcccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCcHHHHH-
Confidence 999766543 3334554443 36789999999876543 68999999999999999999999987 6887655432
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhccC---CcccHHHHHHhhccccchHHHHhhcHHHHHh---hh--hcCCCcHHHHHH
Q 009991 358 ISNDETIAMLAEFKLALNAYLKELVTS---PVRSLAEVIAFNNKFSDLEKIKEYGQDLLLS---AE--ATDGIGKTEKAA 429 (520)
Q Consensus 358 ~~~~~~~~~~~e~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~a 429 (520)
..+..++.+|+..++..|....... ...++.+++...+ ...+++++... .. ........++..
T Consensus 300 --~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 370 (478)
T 3h0l_A 300 --PTYYIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMYARTR-------DEGFGPEVKRRIMLGTFALSAGYYDAYYLK 370 (478)
T ss_dssp --HHHHHHHHHHHHHHTTTCSSSSSSCCCSCCSSHHHHHHHHH-------HHHSCHHHHHHHHHHHHHTSTTTTTTTHHH
T ss_pred --HHHHHHHHHHHHHHHHHhhhhhhcccccccccHHHHHHHhh-------hhhcCHHHHHHHHhhchhccchhhHHHHHH
Confidence 3345566677766554332211111 1123333332111 11222222211 11 011111122333
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCEEEecCcc---------------------hhhhhhhcCCCeeeeccCCCCCCCceeEE
Q 009991 430 ILNLERFTRDGFEKLMSTNNLDALVTPRSY---------------------ASTLLAVGGFPGINVPAGYDSEGVPFGIC 488 (520)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~---------------------~t~~~nl~G~PaisvP~G~~~~GlPvGlQ 488 (520)
.++.+..+++.+.++|+ ++|+||+|+++ +|.+||++|+|++|||+|+ .+|||+|||
T Consensus 371 a~~~r~~~~~~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQ 447 (478)
T 3h0l_A 371 AQKVRRLITNDFLKAFE--EVDVIASPTTPTLPFKFGERLENPIEMYLSDILTVPANLAGLPAISIPIAW-KDGLPVGGQ 447 (478)
T ss_dssp HHHHHHHHHHHHHHHTT--TCSEEEEESCSSSCCBTTTTSSSHHHHHGGGTTTHHHHHHTCCEEEEEEEE-ETTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHh--cCCEEEcCCCCCCCCCcccccCChHhhhhhhhhhhhhHhhCCCeEEEeCCC-CCCCCeEEE
Confidence 34445555677999996 59999999964 4678999999999999999 789999999
Q ss_pred EEccCCChHHHHHHHHHHHHHcCCCCCCCCC
Q 009991 489 FGGLKGTEPKLIEIAYGFEQATKIRKPPSFK 519 (520)
Q Consensus 489 lvg~~~~D~~LL~~A~~lE~~~~~~~~P~~~ 519 (520)
|+|++|+|++||++|++||++++|+..++|+
T Consensus 448 lvg~~~~D~~LL~~A~~lE~~~~~~~~~p~~ 478 (478)
T 3h0l_A 448 LIGKHWDETTLLQISYLWEQKFKHYEKIPLT 478 (478)
T ss_dssp EEECTTCHHHHHHHHHHHHHHSCGGGCCSCC
T ss_pred EECCCCCHHHHHHHHHHHHHhcCcccCCCCC
Confidence 9999999999999999999999998777663
No 4
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=2.2e-101 Score=813.66 Aligned_cols=435 Identities=26% Similarity=0.398 Sum_probs=358.5
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCccEEEEeChh-HHHHHHHHhHHHHhhCCCCCCCcccceeeeecccc
Q 009991 42 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAPGSLPGLHGIPILLKDNIA 120 (520)
Q Consensus 42 ~~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD~~~ 120 (520)
|++.+|+++|++|++|++|++++||+||+++|+.+|||++++ | |+++|+++|++ .|||||||+|||||+
T Consensus 1 ~~a~~l~~~~~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~-~~al~~A~~~d~~---------~pL~GvPi~vKD~~~ 70 (471)
T 3kfu_E 1 MLAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDPG---------LPLAGLVVAVKDNIA 70 (471)
T ss_dssp -CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSCCS---------CTTTTCEEEEETTBC
T ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeC-HHHHHHHHhcCcc---------CCcCCCeEEEECCcc
Confidence 579999999999999999999999999999999999999999 8 99999987742 199999999999999
Q ss_pred ccCCccccccchhhcCCCCCCChHHHHHHHHcCCeEEEecChhhhhhccCCCCCCCccCCCCCCCCCCCCCCCCCCCChh
Q 009991 121 TKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSG 200 (520)
Q Consensus 121 ~~gg~~tt~Gs~~~~~~~~~~da~~V~rLr~aGaii~GkTn~~E~a~~~~~~~~~~~n~~~G~t~NP~~~~~~pGGSSgG 200 (520)
++| ++||+||..+.++++.+||++|+|||++|||++||||||||++ +..+.|++||+|+||||++|+|||||||
T Consensus 71 ~~G-~~tt~Gs~~~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~-----~~~~~n~~~G~t~NP~~~~~~~GGSSgG 144 (471)
T 3kfu_E 71 TRG-LRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGM-----GSSTEHSAFFPTKNPFDPDRVPGGSSGG 144 (471)
T ss_dssp CTT-SCCCTTCSTTTTCCCSSCCHHHHHHHTTTCEEEEEECCSGGGC-----CSSSTTCSSCCCCBTTBTTBCCCSSSHH
T ss_pred cCC-ccccccCHhHcCCCCCCChHHHHHHHHCCCEEEeecCcCchhc-----CCCCCCCCCCCcCCCCccCcCCCCCcHH
Confidence 996 9999999999999999999999999999999999999999998 6778899999999999999999999999
Q ss_pred HHHHHhcCCcceeeccccCCccccccccCCceeecCCCCcccCCCCCCCCCCCcccccccCCHHHHHHHHHHHhCCCCCC
Q 009991 201 SAISVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDHND 280 (520)
Q Consensus 201 sAaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~Gp~aRsv~D~a~~~~~l~g~d~~d 280 (520)
|||+||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.|+|+.|
T Consensus 145 saaaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d 224 (471)
T 3kfu_E 145 SAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLD 224 (471)
T ss_dssp HHHHHHTTSCSEEEEEESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCCTTC
T ss_pred HHHHHHCCCCccccccCCCCccccChhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHHHHHHHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCCCccccccCCCCCCcEEEEECCCccCCCCChHHHHHHHHHHHHHHHCCCEEEeecccCcccccccccc
Q 009991 281 PATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGALVIDHLEIANVNSKNSISN 360 (520)
Q Consensus 281 ~~~~~~~~~~p~~~~~~~l~~~~~~~lRIgv~~~~~~~~~~d~~v~~a~~~a~~~L~~~G~~vve~~~~p~~~~~~~~~~ 360 (520)
+.+... | .+|...+. .+++++||||+.+++ ..++++++++++++++.|+++||+|++ +++|.++... .
T Consensus 225 ~~~~~~----~-~~~~~~~~-~~~~~lrIgv~~~~~--~~~~p~v~~a~~~a~~~L~~~G~~v~~-v~~p~~~~~~---~ 292 (471)
T 3kfu_E 225 ATSLDL----P-PRFQEALE-GPLPPLRLGVVREAL--AGNSPGVERALEEALKVFRELGLSVRE-VSWPSLPQAL---A 292 (471)
T ss_dssp TTCCCC----C-CCTTCCSC-CCCSSCEEEEEGGGT--TTCCHHHHHHHHHHHHHHHTTTCEEEE-ECCTTGGGHH---H
T ss_pred ccccCC----C-cchhhhhc-cCCCCCEEEEECCcc--CCCCHHHHHHHHHHHHHHHHcCCeeee-ecCccHHHHH---H
Confidence 766543 2 24544433 357899999998765 368999999999999999999999987 6888665543 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCC--cccHHHHHHhhccccchHHHHhhcHHHHHhhh-----hcCCCcHHHHHHHHHH
Q 009991 361 DETIAMLAEFKLALNAYLKELVTSP--VRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAE-----ATDGIGKTEKAAILNL 433 (520)
Q Consensus 361 ~~~~~~~~e~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~~~~ 433 (520)
.+..++.+|+..++..|........ ...+.+++...+. .+++++..... ........++....+.
T Consensus 293 ~~~~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~ 364 (471)
T 3kfu_E 293 AYYILAPAEASSNLARYDGTLYGRRAAGEEVEGMMEATRA--------LFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAF 364 (471)
T ss_dssp HHHHHHHHHHHHHGGGCSTTTTSCCCCCSSSHHHHHHHHT--------TSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhh--------hcCHHHHHHHHhcccccccccCHHHHHHHHHH
Confidence 3455667777766544432111111 1223333322111 12222211100 0111111223333444
Q ss_pred HHHHHHHHHHHHhhCCCCEEEecCcc--------------------hhhhhhhcCCCeeeeccCCCCCCCceeEEEEccC
Q 009991 434 ERFTRDGFEKLMSTNNLDALVTPRSY--------------------ASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLK 493 (520)
Q Consensus 434 ~~~~~~~~~~~~~~~~~D~ll~Pt~~--------------------~t~~~nl~G~PaisvP~G~~~~GlPvGlQlvg~~ 493 (520)
+..+++.+.++|+ ++|+||+|+++ ||.+||++|+|++|||+|+ .+|||+||||+|++
T Consensus 365 r~~~~~~~~~~~~--~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQlvg~~ 441 (471)
T 3kfu_E 365 RRRLKAEAQALFR--EVDLLLLPTTPHPAFPFGARRDPLAMYREDLYTVGANLTGLPALSFPAGF-EGHLPVGLQLLAPW 441 (471)
T ss_dssp HHHHHHHHHHHTT--TCSEEEEESCSSSCCBTTTTCSHHHHHGGGTTTHHHHHHCCCEEEEEEEE-ETTEEEEEEEECST
T ss_pred HHHHHHHHHHHHh--cCCEEEeCCcCCCCCccccccchHHHHHHhhhhhcchhhCCCeEEEeCCC-CCCCCeEEEEECCC
Confidence 5555677999997 59999999975 4668999999999999999 89999999999999
Q ss_pred CChHHHHHHHHHHHHHc-CCCCC
Q 009991 494 GTEPKLIEIAYGFEQAT-KIRKP 515 (520)
Q Consensus 494 ~~D~~LL~~A~~lE~~~-~~~~~ 515 (520)
|+|++||++|++||++. +|+.+
T Consensus 442 ~~D~~LL~~A~~lE~~~g~w~~~ 464 (471)
T 3kfu_E 442 GEDERLLRAALAFEEATARAHLK 464 (471)
T ss_dssp TCHHHHHHHHHHHHHHSSCCCCC
T ss_pred CCHHHHHHHHHHHHHHhcCcccC
Confidence 99999999999999999 88644
No 5
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=1.8e-100 Score=800.96 Aligned_cols=405 Identities=26% Similarity=0.314 Sum_probs=345.9
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCccEEEEeChh-HHHHHHHHhHHHHhhCCCCCCCcccceeeeecccc
Q 009991 42 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAPGSLPGLHGIPILLKDNIA 120 (520)
Q Consensus 42 ~~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD~~~ 120 (520)
+|+.+|+++|++|++|++|++++||+||+++|+ +|||+++++| |+++|+++|+++ ++|+..||||||||+|||||+
T Consensus 1 ~~~~~l~~~~~~g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~--~~g~~~gpL~GvPi~vKD~~~ 77 (434)
T 2dc0_A 1 MDLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEEL--RRGQVRGPLHGLPLTVKDLFP 77 (434)
T ss_dssp CCHHHHHHHHHTTSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHH--HTTCCCSTTTTCEEEEETTSC
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHH--hcCCCCCCcCCeeEEEEeccc
Confidence 478999999999999999999999999999999 9999999998 999999999988 778889999999999999999
Q ss_pred ccCCccccccchhhcCCCC-CCChHHHHHHHHcCCeEEEecChhhhhhccCCCCCCCccCCCCCCCCCCCCCCCCCCCCh
Q 009991 121 TKDKMNTTAGSYALLGSVV-PRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSS 199 (520)
Q Consensus 121 ~~gg~~tt~Gs~~~~~~~~-~~da~~V~rLr~aGaii~GkTn~~E~a~~~~~~~~~~~n~~~G~t~NP~~~~~~pGGSSg 199 (520)
++| ++||+||..+ ++| .+||++|+|||+||||++||||||||++ +..++|++||+|+||||++|+||||||
T Consensus 78 v~G-~~tt~Gs~~~--~~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~-----~~~~~n~~~G~t~NP~~~~~~pGGSSg 149 (434)
T 2dc0_A 78 VKG-MPTRAGTKAP--LPPLPEEARAVRRLREAGALLFAKTNMHEIAL-----GITGENPWTGPVRNAVDPSRQAGGSSG 149 (434)
T ss_dssp BTT-BCCCTTCSSC--CCCCCSSCHHHHHHHHTTCEEEEEECCSGGGC-----CSSCCCTTTCCCBCSSCTTBBCCSSSH
T ss_pred cCC-cccCCCCccc--CCCCCCCHHHHHHHHHCCCEEEEEeChhHHhc-----CCCCCCCCCCCCCCCCCCCCCCcccHH
Confidence 996 9999999999 677 8999999999999999999999999998 678899999999999999999999999
Q ss_pred hHHHHHhcCCcceeeccccCCccccccccCCceeecCCCCcccCCCCCCCCCCCcccccccCCHHHHHHHHHHHhCCCCC
Q 009991 200 GSAISVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDHN 279 (520)
Q Consensus 200 GsAaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~Gp~aRsv~D~a~~~~~l~g~d~~ 279 (520)
|||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.|+ +.
T Consensus 150 GsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~-~~ 228 (434)
T 2dc0_A 150 GSAVAVALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE-SI 228 (434)
T ss_dssp HHHHHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTS-CC
T ss_pred HHHHHHHcCCCceeeecCCChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHHHhCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 65
Q ss_pred CCCccccccCCCCCCccccccCCCCCCcEEEEECCCccCCCCChHHHHHHHHHHHHHHHCCCEEEeecccCccccccccc
Q 009991 280 DPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGALVIDHLEIANVNSKNSIS 359 (520)
Q Consensus 280 d~~~~~~~~~~p~~~~~~~l~~~~~~~lRIgv~~~~~~~~~~d~~v~~a~~~a~~~L~~~G~~vve~~~~p~~~~~~~~~ 359 (520)
|+. +.+++||||+.++++. .++++++++++++++.|+++||+|++ +++| ++...
T Consensus 229 d~~--------------------~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~p-~~~~~--- 282 (434)
T 2dc0_A 229 PLE--------------------GVQNPVFGVPLDFLEG-RLGVEVRKAFTRLLEDLPALRAEVRE-VSLP-LEGVY--- 282 (434)
T ss_dssp CCC--------------------CCCSCEEEECHHHHTT-CSCHHHHHHHHHHHHHTTTTTCEEEE-CCCC-CTTHH---
T ss_pred Ccc--------------------cccCCEEEEECccccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCC-cHHHH---
Confidence 521 2467899999876544 58999999999999999999999987 6777 55432
Q ss_pred chHHHHHHHHHHHHHHHHHHHhccCCcccHHHHHHhhccccchHHHHhhcHHHHHhhhhcCCCcHHHHHHHHHHHHHHHH
Q 009991 360 NDETIAMLAEFKLALNAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRD 439 (520)
Q Consensus 360 ~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 439 (520)
..+..++..|+...+..++... ...+.+.+.........++..++....+.+..+++
T Consensus 283 ~~~~~~~~~e~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~ 339 (434)
T 2dc0_A 283 EVYTRLVRYEAARIHEKALKEH-----------------------PEGFSPQVREALLAGLALTEKDYRDAVAEREALRL 339 (434)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHC-----------------------GGGSCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-----------------------hhhcCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 2334555667665544433211 01122222221222222333334444445555677
Q ss_pred HHHHHHhhCCCCEEEecCcc--------------------------hhhhhhhcCCCeeeeccCCCCCCCceeEEEEccC
Q 009991 440 GFEKLMSTNNLDALVTPRSY--------------------------ASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLK 493 (520)
Q Consensus 440 ~~~~~~~~~~~D~ll~Pt~~--------------------------~t~~~nl~G~PaisvP~G~~~~GlPvGlQlvg~~ 493 (520)
.+.++|+ ++|+||+|+++ ||.+||++|+|++|||+|+ .+|||+||||+|++
T Consensus 340 ~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGvqlvg~~ 416 (434)
T 2dc0_A 340 ELVKALR--GVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLGVPTLALPFAK-VEGMPVGLQVVGAY 416 (434)
T ss_dssp HHHHHHT--TSSEEEEESCSSSCCBTTCCEEEETTEEEEHHHHHHTTTHHHHHTTCCEEEEEEEE-ETTEEEEEEEECCT
T ss_pred HHHHHHh--cCCEEEECCCCCCCccCcccccccccchhhhhhhhhhhhhhhhhhCCCeEEEecCC-CCCCCeEEEEECCC
Confidence 7999997 49999999963 2457899999999999999 89999999999999
Q ss_pred CChHHHHHHHHHHHHHc
Q 009991 494 GTEPKLIEIAYGFEQAT 510 (520)
Q Consensus 494 ~~D~~LL~~A~~lE~~~ 510 (520)
|+|++||++|++||+++
T Consensus 417 ~~d~~lL~~A~~lE~~~ 433 (434)
T 2dc0_A 417 GEDGKVLALGGWLEARL 433 (434)
T ss_dssp TCHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHHhh
Confidence 99999999999999875
No 6
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=5.8e-100 Score=810.71 Aligned_cols=431 Identities=22% Similarity=0.263 Sum_probs=354.6
Q ss_pred cccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCccEEEEeChh-HHHHHHHHhHHHHhhCCCCCCCcccceee
Q 009991 36 AFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAPGSLPGLHGIPIL 114 (520)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~ 114 (520)
..++.+ ++.+|+++|++|++|++|++++||+||+++|+.+|||+++++| |+++|++ | .||||||||+
T Consensus 3 ~~~~~~-~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d----------~gpL~GvPi~ 70 (493)
T 3a2q_A 3 KVDLWQ-DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A----------SGPFAGVPYL 70 (493)
T ss_dssp -CCTTS-CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C----------CSTTTTCEEE
T ss_pred hhhhhh-hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c----------CCCcCCcEEE
Confidence 445677 9999999999999999999999999999999999999999999 9999876 5 3799999999
Q ss_pred eeccc-cccCCccccccchhhc--CCCCCCChHHHHHHHHcCCeEEEecChhhhhhccCCCCCCCccCCCCCCCCCCCCC
Q 009991 115 LKDNI-ATKDKMNTTAGSYALL--GSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLS 191 (520)
Q Consensus 115 vKD~~-~~~gg~~tt~Gs~~~~--~~~~~~da~~V~rLr~aGaii~GkTn~~E~a~~~~~~~~~~~n~~~G~t~NP~~~~ 191 (520)
||||| +++| ++||+||..+. ++++.+||++|+|||+||||++||||||||++ +..++|++||+|+||||++
T Consensus 71 vKD~~~~v~G-~~Tt~Gs~~~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~-----~~~~~n~~~G~t~NP~~~~ 144 (493)
T 3a2q_A 71 LKDLTVVSQG-DINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGN-----QVTTEPEAWGATRNPWNLG 144 (493)
T ss_dssp EESSSSCCTT-SBCCTTCHHHHHHTCBCSSCCHHHHHHHHHTCEEEEEECCSGGGC-----SSSCCCTTTCCCCBTTBTT
T ss_pred EecCCcCcCC-CcccccChhhhhcCCCCCCCHHHHHHHHHCCCceEEEcChhhhhc-----CCCCCCCCCCCCCCCCCCC
Confidence 99999 9996 99999999999 99999999999999999999999999999998 6788999999999999999
Q ss_pred CCCCCCChhHHHHHhcCCcceeeccccCCccccccccCCceeecCCCCcccCCCC--C-CCCCCCcccccccCCHHHHHH
Q 009991 192 ADPWGSSSGSAISVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGV--I-PLTPRQDSVGPICRTVADAVY 268 (520)
Q Consensus 192 ~~pGGSSgGsAaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~--~-p~~~~~d~~Gp~aRsv~D~a~ 268 (520)
|+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|+ + |+++++|++|||||||+|+++
T Consensus 145 ~~pGGSSgGsAAAVAaG~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~arsv~D~a~ 224 (493)
T 3a2q_A 145 RSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAA 224 (493)
T ss_dssp BCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSHHHHHH
T ss_pred CCCCcCcHHHHHHHHcCCCceeeecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 5 788899999999999999999
Q ss_pred HHHHHhCCCCCCCCccccccCCCCCCccccccCCCCCCcEEEEECCCcc-CCCCChHHHHHHHHHHHHHHHCCCEEEeec
Q 009991 269 VLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFF-NILKGSPLAQVFDHHLQTLRQEGALVIDHL 347 (520)
Q Consensus 269 ~~~~l~g~d~~d~~~~~~~~~~p~~~~~~~l~~~~~~~lRIgv~~~~~~-~~~~d~~v~~a~~~a~~~L~~~G~~vve~~ 347 (520)
++++|.|+|+.|+.+... |..+|.+.+. .+.+++||||+.+.++ ...++++++++++++++.|+++||+|+| +
T Consensus 225 ~l~~l~g~d~~d~~~~~~----p~~~~~~~~~-~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~ 298 (493)
T 3a2q_A 225 LLDVVSGHRPGDTFCAPT----ASRPYAQGIS-ENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGHDVND-A 298 (493)
T ss_dssp HHHHHBSCCTTCSCCCCC----CSSCHHHHTT-SCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHHTTCEEEE-C
T ss_pred HHHHHcCCCCCCcccccC----CCcchhhhcc-cCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHHCCCEEEE-e
Confidence 999999999998765432 2223544332 3468899999988652 2368999999999999999999999987 6
Q ss_pred ccCccc--ccccccchHHHHHHHHHHHHHHHHHHHhccCCcccHHHHHHhhccccchHHHHhhcHHHHHhhhhcCCCcHH
Q 009991 348 EIANVN--SKNSISNDETIAMLAEFKLALNAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKT 425 (520)
Q Consensus 348 ~~p~~~--~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (520)
++|.++ ... ..+..++..|+...+..+...+.... +. ..+.+...........++..
T Consensus 299 ~~~~~~~~~~~---~~~~~~~~~e~~~~~~~~~~~~~~~~-------------~~-----~~~~~~~~~~~~~g~~~~~~ 357 (493)
T 3a2q_A 299 YPEALGDRSFL---KDYSTICDVAIAREIERNGELIGRPL-------------TE-----DDVEWTSWEMVKRADQVTGR 357 (493)
T ss_dssp CCGGGGCCTHH---HHHHHHHHHHHHHHHHHHHHHHTSCC-------------CT-----TTSCHHHHHHHHHHHTCCHH
T ss_pred CCCccCHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCcc-------------Ch-----hhcCHHHHHHHHhhccCCHH
Confidence 766443 221 23345566676654433322111000 00 01122222112222233444
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhCCCCEEEecCcc---------------------------------hhhhhhhcCCCe
Q 009991 426 EKAAILNLERFTRDGFEKLM-STNNLDALVTPRSY---------------------------------ASTLLAVGGFPG 471 (520)
Q Consensus 426 ~~~a~~~~~~~~~~~~~~~~-~~~~~D~ll~Pt~~---------------------------------~t~~~nl~G~Pa 471 (520)
++....+.+..+++.+.++| + ++|+||+|+++ ||.+||++|+|+
T Consensus 358 ~~~~a~~~r~~~~~~~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~Pa 435 (493)
T 3a2q_A 358 AFAACVDELRYYAGKVERWWEA--GWDLLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPA 435 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--TCCEEEEESCSSCCCBTTTTCCCTTCCCCSSCGGGSHHHHHHHTTTTHHHHHCCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--CCCEEEcCCCCCCCCCCcccccccccccccccchhhhhhhhhhcccccccccCCCc
Confidence 44444445555567799999 6 49999999853 345789999999
Q ss_pred eeeccCCCCCCCceeEEEEccCCChHHHHHHHHHHHHHcCCC
Q 009991 472 INVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATKIR 513 (520)
Q Consensus 472 isvP~G~~~~GlPvGlQlvg~~~~D~~LL~~A~~lE~~~~~~ 513 (520)
+|||+|++.+|||+||||||++|+|++||++|++||++++|+
T Consensus 436 isvP~g~~~~GlPvGvQlvg~~~~d~~lL~~A~~lE~~~~~~ 477 (493)
T 3a2q_A 436 ISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLEGALPWV 477 (493)
T ss_dssp EEEEEEECTTSCEEEEEEEESTTCHHHHHHHHHHHHHHSCCT
T ss_pred eeccCCcCCCCCCeEEEEecCCCChHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999983
No 7
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=2.1e-99 Score=802.99 Aligned_cols=439 Identities=28% Similarity=0.409 Sum_probs=348.9
Q ss_pred CcccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCccEEEEeChh-HHHHHHHHhHHHHhhCCCCCCCccccee
Q 009991 35 HAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAPGSLPGLHGIPI 113 (520)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi 113 (520)
..+++.++++.+| |++|++|++|++++||+||+++|+.+|||+++++| |+ | + . ||||||||
T Consensus 3 ~~~~~~~~s~~~l---i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~al------d-----~---~-gpL~GvPi 64 (476)
T 2gi3_A 3 IDLDFRKLTIEEC---LKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSV------E-----K---K-GKFWGIPV 64 (476)
T ss_dssp SCSCGGGCCHHHH---TTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCC------C-----C---C-STTTTCEE
T ss_pred CccccccCCHHHH---HHcCCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhh------h-----c---c-CCcCCceE
Confidence 3567888899999 99999999999999999999999999999999988 66 2 2 2 89999999
Q ss_pred eeeccccccCCccccccchhhcCCCCCCChHHHHHHHHcCCeEEEecChhhhhhccCCCCCCCccCCCCCCCCCCCCCCC
Q 009991 114 LLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSAD 193 (520)
Q Consensus 114 ~vKD~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~rLr~aGaii~GkTn~~E~a~~~~~~~~~~~n~~~G~t~NP~~~~~~ 193 (520)
+|||||+++| ++||+||..+.+++|.+||++|+|||+||||++||||||||++ +..++|++||+|+||||++|+
T Consensus 65 ~vKD~~~v~G-~~Tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~-----~~~~~n~~~G~t~NP~~~~~~ 138 (476)
T 2gi3_A 65 AIKDNILTLG-MRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAM-----GSSTERSAFFPTRNPWDLERV 138 (476)
T ss_dssp EEETTBCCSS-SCCCTTCGGGTTCCCCSCCHHHHHHHHHTCEEEEEECCSGGGC-----CSSSTTCSSCCCCBTTBTTBC
T ss_pred EEEcCccCCC-CccCccChhhcCCCCCCChHHHHHHHHCCCEEEEecCchhhhc-----CCCCCCCCCCCCCCCCCCCCC
Confidence 9999999996 9999999999999999999999999999999999999999998 678899999999999999999
Q ss_pred CCCCChhHHHHHhcCCcceeeccccCCccccccccCCceeecCCCCcccCCCCCCCCCCCcccccccCCHHHHHHHHHHH
Q 009991 194 PWGSSSGSAISVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAI 273 (520)
Q Consensus 194 pGGSSgGsAaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~Gp~aRsv~D~a~~~~~l 273 (520)
|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|
T Consensus 139 pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~l~~l 218 (476)
T 2gi3_A 139 PGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEII 218 (476)
T ss_dssp CCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHcCCCceEeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCccccccCCCCCCccccccCCCCCCcEEEEECCCccCCCCChHHHHHHHHHHHHHHHCCCEEEeecccCccc
Q 009991 274 AGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGALVIDHLEIANVN 353 (520)
Q Consensus 274 ~g~d~~d~~~~~~~~~~p~~~~~~~l~~~~~~~lRIgv~~~~~~~~~~d~~v~~a~~~a~~~L~~~G~~vve~~~~p~~~ 353 (520)
.|+|+.|+.+... |. +|.+.+. .+++++||||+.+.+.. .++++++++++++++.|+++||+|+| +++|.+.
T Consensus 219 ~g~d~~d~~~~~~----p~-~~~~~~~-~~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~p~~~ 290 (476)
T 2gi3_A 219 SGRDENDATTVNR----KV-DFLSEIE-EGVSGMKFAVPEEIYEH-DIEEGVSERFEEALKLLERLGAKVER-VKIPHIK 290 (476)
T ss_dssp BSCBTTBTTCCSC----CC-CSSTTTT-SCCTTCEEEEEGGGGGS-CCCHHHHHHHHHHHHHHHHTTCEEEE-ECCTTGG
T ss_pred hCCCCCCccccCC----Cc-chhhhhh-cCCCCCEEEEECccccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCchH
Confidence 9999988765432 22 3444333 35688999999876533 58999999999999999999999998 6777654
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHhccCCc--ccHHHHHHhhccccchHHHHhhcHHHHHhhhhcC-----CCcHHH
Q 009991 354 SKNSISNDETIAMLAEFKLALNAYLKELVTSPV--RSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATD-----GIGKTE 426 (520)
Q Consensus 354 ~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 426 (520)
... ..+..++.+|+..++..|......... ..+.+++...+. + .+++.+........ .....+
T Consensus 291 ~~~---~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~g~~~~~~~~~~~~ 360 (476)
T 2gi3_A 291 YSV---ATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRN----V---GFGEEVRRRIMIGTFTLSAAYYEAY 360 (476)
T ss_dssp GHH---HHHHHHHHHHHHTC------------------------CCS----C---CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHhhhh----h---hcCHHHHHHHHhccccccchhhHHH
Confidence 332 233445566766555444321111000 111112111000 0 11121111111100 001113
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCEEEecCcc--------------------hhhhhhhcCCCeeeeccCCCCCCCcee
Q 009991 427 KAAILNLERFTRDGFEKLMSTNNLDALVTPRSY--------------------ASTLLAVGGFPGINVPAGYDSEGVPFG 486 (520)
Q Consensus 427 ~~a~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~--------------------~t~~~nl~G~PaisvP~G~~~~GlPvG 486 (520)
+....+.+..+++.++++|++ +|+||+|+++ ||.+||++|+|++|||+|++ +|||+|
T Consensus 361 ~~~a~~~r~~~~~~~~~~~~~--~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvG 437 (476)
T 2gi3_A 361 FNKAMKVRRKISDELNEVLSQ--YDAILTPTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGFS-NNLPVG 437 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--SSEEEEESCSSCCCBTTTCCCHHHHHTTTTTTHHHHHHTCCEEEEEEEEE-TTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CCEEEeCCCCCCCCcccccccchhhhhccceeccccccCCceEEEecccC-CCCCeE
Confidence 333444555567779999985 9999999964 45689999999999999987 899999
Q ss_pred EEEEccCCChHHHHHHHHHHHHHcCCCCCCCC
Q 009991 487 ICFGGLKGTEPKLIEIAYGFEQATKIRKPPSF 518 (520)
Q Consensus 487 lQlvg~~~~D~~LL~~A~~lE~~~~~~~~P~~ 518 (520)
|||+|++|+|++||++|++||++++|++.+.+
T Consensus 438 vqlvg~~~~d~~lL~~A~~lE~~~~~~~~~~~ 469 (476)
T 2gi3_A 438 VQVIGRRFADGKVFRIARAIEKNSPYNENGMF 469 (476)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHCTTSBTTBC
T ss_pred EEEEcCCCCHHHHHHHHHHHHHhcCcccccCC
Confidence 99999999999999999999999999877543
No 8
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=3.9e-96 Score=785.63 Aligned_cols=452 Identities=21% Similarity=0.205 Sum_probs=354.4
Q ss_pred hhhcccCCcccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCccEEEEeChhHHHHHHHHhHHHHhhCCCCCCC
Q 009991 28 SAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAPGSLPG 107 (520)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~al~~A~~~d~~~~~~~g~~~gp 107 (520)
..+.-..+.-+|.++++.+|+++|++|++|++||+++|++||++.|+.+|||+++.+|++++|++++ ..||
T Consensus 57 ~~~~~~~~~~~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~a~~~a~~~~---------~~gp 127 (573)
T 3ppm_A 57 RLQNPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAP---------RQGL 127 (573)
T ss_dssp HHHCTTCCHHHHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTHHHHHHHCC---------TTCT
T ss_pred cccCCCCChhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCEEEEECHHHHHHHHhhh---------hcCC
Confidence 3444444556688999999999999999999999999999999999999999999988766655432 1389
Q ss_pred cccceeeeeccccccCCccccccchhhcCCCCCCChHHHHHHHHcCCeEEEecChhhhhhccCCCCCCCccCCCCCCCCC
Q 009991 108 LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNP 187 (520)
Q Consensus 108 L~GvPi~vKD~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~rLr~aGaii~GkTn~~E~a~~~~~~~~~~~n~~~G~t~NP 187 (520)
||||||+|||||+++| ++||+||..+.++++.+||++|++||+||||++||||||||++ +..+.|++||+|+||
T Consensus 128 L~GvPi~vKD~~~~~G-~~tt~Gs~~~~~~~~~~da~vV~~L~~aGAv~~gKTn~pe~~~-----~~~~~n~~~G~t~NP 201 (573)
T 3ppm_A 128 LYGVPVSLKECFSYKG-HDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMF-----SYDCSNPLFGQTMNP 201 (573)
T ss_dssp TTTCEEEEETTBCCBT-CCCCTTCGGGTTCCBSSCCHHHHHHHHTTCEEEEEECCCTTSC-----SSSCEETTTEECCCT
T ss_pred cCCCeEEEEcccCCCC-CCcCCcChhhcCCCCCcchHHHHHHHHCCCEEEEecCCccccc-----cCCCCCCCCCCcCCC
Confidence 9999999999999996 9999999999999999999999999999999999999999998 677889999999999
Q ss_pred CCCCCCCCCCChhHHHHHhcCCcceeeccccCCccccccccCCceeecCCCCcccCCCCCCCCCC----CcccccccCCH
Q 009991 188 YVLSADPWGSSSGSAISVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPR----QDSVGPICRTV 263 (520)
Q Consensus 188 ~~~~~~pGGSSgGsAaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~~p~~~~----~d~~Gp~aRsv 263 (520)
||++++||||||||||+||+|++++|+|||||||||+||+||||||||||+||||+.|++|.+++ +|++|||||||
T Consensus 202 ~~~~~~~GGSSgGsaaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv 281 (573)
T 3ppm_A 202 WKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDV 281 (573)
T ss_dssp TCTTBCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSH
T ss_pred CCCCCCCCCCCchHHHHHHcCCCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcH
Confidence 99999999999999999999999999999999999999999999999999999999999998876 78999999999
Q ss_pred HHHHHHHHHHhCCCC--CCCCccccccCCCCCCccccccCCCCCCcEEEEECCCccCCCCChHHHHHHHHHHHHHHHCCC
Q 009991 264 ADAVYVLDAIAGFDH--NDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGA 341 (520)
Q Consensus 264 ~D~a~~~~~l~g~d~--~d~~~~~~~~~~p~~~~~~~l~~~~~~~lRIgv~~~~~~~~~~d~~v~~a~~~a~~~L~~~G~ 341 (520)
+|+++++++|.|.|+ .|+... ..+|.+.+. ...+++||||+.++++. .++|+++++++++++.|+++||
T Consensus 282 ~D~a~~l~~l~~~d~~~~d~~~~-------~~~~~~~~~-~~~~~lrigv~~~~~~~-~~~p~v~~a~~~a~~~L~~~G~ 352 (573)
T 3ppm_A 282 ESLALCLKALLCEHLFTLDPTVP-------PLPFREEVY-RSSRPLRVGYYETDNYT-MPSPAMRRALIETKQRLEAAGH 352 (573)
T ss_dssp HHHHHHHHHHSSHHHHHHCTTSC-------CCCCCHHHH-TCCCCCEEEECSCCSSS-CCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcccccccCCCCC-------ccccchhhc-ccCCCCEEEEEcccCCC-CCCHHHHHHHHHHHHHHHHCCC
Confidence 999999999999874 343321 113443332 34688999999876654 5799999999999999999999
Q ss_pred EEEeecccCcccccccccchHHHHHHHHHHHHHHHHHHHhccCCc--------------ccHHHHHHhhccccchHHHHh
Q 009991 342 LVIDHLEIANVNSKNSISNDETIAMLAEFKLALNAYLKELVTSPV--------------RSLAEVIAFNNKFSDLEKIKE 407 (520)
Q Consensus 342 ~vve~~~~p~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 407 (520)
+|+| +++|.+.+... ......+..|.... ++..+..++. +.+..++.+.. ..
T Consensus 353 ~v~~-~~~p~~~~~~~--~~~~~~~~~dg~~~---~~~~~~~e~~~p~~~~~~~~~~lp~~l~~~~~~~~--------~~ 418 (573)
T 3ppm_A 353 TLIP-FLPNNIPYALE--VLSTGGLFSDGGRS---FLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLL--------KP 418 (573)
T ss_dssp EEEE-CCCTTHHHHHH--THHHHHHTTBTTHH---HHGGGTTSCCCGGGTTHHHHHTSCHHHHHHHHHHH--------TT
T ss_pred EEEE-ecCccHHHHHH--HHHHHHHhhhhHHH---HHHHhccCcccHHHHHHhhhccchHHHHHHHHHHh--------hh
Confidence 9998 68776543220 00001111121111 1221111111 11112221110 01
Q ss_pred hcHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEecCcc----------------hhhhhhhcCCCe
Q 009991 408 YGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRSY----------------ASTLLAVGGFPG 471 (520)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~----------------~t~~~nl~G~Pa 471 (520)
+.+.+..........+...+..+...++.+++++.+.|+++++|+||+|+.+ ||.+||++|+|+
T Consensus 419 ~~p~~~~~~~~~~~~s~~e~~~~~~~r~~~r~~~~~~w~~~~lDaLL~Pt~~pA~~h~~~~~~~~~~~YT~l~NLLDyPA 498 (573)
T 3ppm_A 419 LFPRLAAFLNNMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRATGAVSYTMLYNCLDFPA 498 (573)
T ss_dssp TCHHHHHHHHHTSBCBHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCSCCBTTCGGGCGGGGHHHHHHHHTTCCE
T ss_pred cchHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhcCCCEeeCCCCCCCcCCccccccccccchhhhhHhhCCCe
Confidence 1111110111122234444444455555667789999987789999999842 578999999999
Q ss_pred eeeccCCC-----------------------------CCCCceeEEEEccCCChHHHHHHHHHHHHHcCCCCCCC
Q 009991 472 INVPAGYD-----------------------------SEGVPFGICFGGLKGTEPKLIEIAYGFEQATKIRKPPS 517 (520)
Q Consensus 472 isvP~G~~-----------------------------~~GlPvGlQlvg~~~~D~~LL~~A~~lE~~~~~~~~P~ 517 (520)
++||+|+. .+|+|+||||||++|+|++||++|+.+|++++.++.|+
T Consensus 499 ~vVPvg~v~~~~d~~~~~~~~~~~~~~d~~~~~~~~~~~GlPVgVQiVGrr~~EEklL~~a~~IE~~l~~~~~~~ 573 (573)
T 3ppm_A 499 GVVPVTTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQKQPS 573 (573)
T ss_dssp EEEEEEECCHHHHHHHTTCCCSSCSHHHHHHHHHTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHCTTSCC-
T ss_pred EEEecccccccccccccccccccchhhhhhhhhhhhccCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcccCCC
Confidence 99999964 37999999999999999999999999999999888764
No 9
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=4.8e-95 Score=754.94 Aligned_cols=393 Identities=25% Similarity=0.300 Sum_probs=330.4
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCccEEEEeChh-HHHHHHHHhHHHHhhCCCCCCCcccceeeeecccc
Q 009991 42 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAPGSLPGLHGIPILLKDNIA 120 (520)
Q Consensus 42 ~~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD~~~ 120 (520)
+++.+|+++|++|++|++|++++||+||+++|+.+|||+++++| + + +..||||||||+|||||+
T Consensus 2 ~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~--------------~~~gpL~GvPi~vKD~~~ 66 (414)
T 1o9p_A 2 ISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A--------------QASGPLRGIAVGIKDIID 66 (414)
T ss_dssp CCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C--------------CSSSTTTTCEEEEETTBC
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c--------------ccCCCcCCCEEEEEcccc
Confidence 58999999999999999999999999999999999999999998 5 1 125899999999999999
Q ss_pred ccCCccccccchhhcCCCCCCChHHHHHHHHcCCeEEEecChhhhhhccCCCCCCCccCCCCCCCCCCCCCCCCCCCChh
Q 009991 121 TKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSG 200 (520)
Q Consensus 121 ~~gg~~tt~Gs~~~~~~~~~~da~~V~rLr~aGaii~GkTn~~E~a~~~~~~~~~~~n~~~G~t~NP~~~~~~pGGSSgG 200 (520)
++| ++||+||..+.++++.+||++|+|||+||||++||||||||++ .|+ |+|+||||++|+|||||||
T Consensus 67 v~G-~~tt~Gs~~~~~~~~~~dA~~V~rL~~aGAii~GKTn~~Efa~---------~n~--G~t~NP~~~~~~pGGSSgG 134 (414)
T 1o9p_A 67 TAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFAS---------RDP--TATLNPHNTGHSPGGASSG 134 (414)
T ss_dssp CSS-SCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCCGGGS---------SCC--CSCCBTTBTTBCCCSSSHH
T ss_pred cCC-cccCcCCHhhccCCCCCCHHHHHHHHHCCCEEEEecCCchhhc---------CCC--CCCCCCCCCCCCCCcchHH
Confidence 996 9999999999999999999999999999999999999999996 244 9999999999999999999
Q ss_pred HHHHHhcCCcceeeccccCCccccccccCCceeecCCCCcccCCCCCCCCCCCcccccccCCHHHHHHHHHHHhCCCCCC
Q 009991 201 SAISVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDHND 280 (520)
Q Consensus 201 sAaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~Gp~aRsv~D~a~~~~~l~g~d~~d 280 (520)
||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|+++++++|.|++ +
T Consensus 135 sAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~--~ 212 (414)
T 1o9p_A 135 SAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRS--E 212 (414)
T ss_dssp HHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCG--G
T ss_pred HHHHHHcCCCceEEeeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCHHHHHHHHHHhcCCC--c
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999975 1
Q ss_pred CCccccccCCCCCCccccccCCCCCCcEEEEECCCccCCCCChHHHHHHHHHHHHHHHCCCEEEeecccCcc-ccccccc
Q 009991 281 PATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGALVIDHLEIANV-NSKNSIS 359 (520)
Q Consensus 281 ~~~~~~~~~~p~~~~~~~l~~~~~~~lRIgv~~~~~~~~~~d~~v~~a~~~a~~~L~~~G~~vve~~~~p~~-~~~~~~~ 359 (520)
+ . + ..+.+++||||+.++++. .++++++++++++++.|+++||+|+| +++|.. +...
T Consensus 213 ~----~----~---------~~~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~~~~~~~~~--- 270 (414)
T 1o9p_A 213 F----S----G---------IVPAKAPRIGVVRQEFAG-AVEPAAEQGLQAAIKAAERAGASVQA-IDLPEAVHEAW--- 270 (414)
T ss_dssp G----S----S---------CCCCSSCEEEECCCGGGC-CCCHHHHHHHHHHHHHHHHTTCEEEE-CCCCHHHHHHH---
T ss_pred c----c----c---------ccCCCCCEEEEECccccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-ecCcchHHHHH---
Confidence 1 0 1 023578999999887654 68999999999999999999999987 676632 2221
Q ss_pred chHHHHHHHHHHHHHHHHHHHhccCCcccHHHHHHhhccccchHHHHhhcHHHHHhhhhcCCCcHHHHHHHHHHHHHHHH
Q 009991 360 NDETIAMLAEFKLALNAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRD 439 (520)
Q Consensus 360 ~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 439 (520)
..+..++.+|+...+..++.... ..+.+.+.........++..++....+.+..+++
T Consensus 271 ~~~~~~~~~e~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~ 327 (414)
T 1o9p_A 271 RIHPIIQDFEAHRALAWEFSEHH-----------------------DEIAPMLRASLDATVGLTPKEYDEARRIGRRGRR 327 (414)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHSG-----------------------GGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCh-----------------------hhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 12234556666655544432210 1122233222233344454444444555556677
Q ss_pred HHHHHHhhCCCCEEEecCcc---------------hhhhhhhcCCCeeeeccCCCCCCCceeEEEEccCCChHHHHHHHH
Q 009991 440 GFEKLMSTNNLDALVTPRSY---------------ASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAY 504 (520)
Q Consensus 440 ~~~~~~~~~~~D~ll~Pt~~---------------~t~~~nl~G~PaisvP~G~~~~GlPvGlQlvg~~~~D~~LL~~A~ 504 (520)
.+.++|+ ++|+||+|+++ ||.+||++|+|++|||+|++. |||+||||+|++|+|++||++|+
T Consensus 328 ~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~-GlPvGvqlvg~~~~d~~lL~~a~ 404 (414)
T 1o9p_A 328 ELGEVFE--GVDVLLTYSAPGTAPAKALASTGDPRYNRLWTLMGNPCVNVPVLKVG-GLPIGVQVIARFGNDAHALATAW 404 (414)
T ss_dssp HHHHHTT--TCSEEEEESSSSSCCBGGGCCCCCGGGTHHHHHHCCCEEEEEEEEET-TEEEEEEEEESTTCHHHHHHHHH
T ss_pred HHHHHHc--CCCEEEeCCCCCCCCcccccCCcccchhhhhHhcCCCeEEeeCCCCC-CCCeEEEEECCCCChHHHHHHHH
Confidence 7999997 49999999964 467899999999999999988 99999999999999999999999
Q ss_pred HHHHHcC
Q 009991 505 GFEQATK 511 (520)
Q Consensus 505 ~lE~~~~ 511 (520)
+||++++
T Consensus 405 ~le~~~~ 411 (414)
T 1o9p_A 405 FLEDALA 411 (414)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999864
No 10
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=4.2e-95 Score=774.77 Aligned_cols=452 Identities=25% Similarity=0.346 Sum_probs=344.8
Q ss_pred cCHHHHHHHHHcCCCCH-HHHHHHHHHHHHhhCCCccEEE-EeChh-HHHHHHHHhHHH-------HhhCCCCCCCcccc
Q 009991 42 ATIKDLQLAFKQNKLTS-RQLVEFYLGEIHRLNPLLHGVI-EVNPD-ALSQADKADYER-------KVKAPGSLPGLHGI 111 (520)
Q Consensus 42 ~~~~~l~~~~~~g~~s~-~e~~~~~l~ri~~~~~~lna~~-~~~~~-al~~A~~~d~~~-------~~~~g~~~gpL~Gv 111 (520)
+++.++...|.+++++. +|+++.+++++++.++.+|+++ .+..+ + .++.+.|+.. ...+|+..||||||
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~g~~~gpL~Gv 91 (521)
T 3a1k_A 13 AAARHYGITLDKTARLEWPALIDGALGSYDVVDQLYADEATPPTTSRE-HAVPSASENPLSAWYVTTSIPPTSDGVLTGR 91 (521)
T ss_dssp HHHHHTTCCCCTTHHHHHHHHHHHHTHHHHHHHHHHHHHSCCCCCCCC-EECCCTTTCTTSCEEEEEEECCSSCCTTTTC
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhhhcccccccCchhh-hhccccccchhhhhHHHHhhcCCCCCCCCCC
Confidence 45677777888999999 9999999999999987776666 55655 5 5555555410 00347778999999
Q ss_pred eeeeeccccccCCccccccchhhcCCCCCCChHHHHHHHHcCCeEEEecChhhhhhccCCCCCCCccCCCCCCCCCCCCC
Q 009991 112 PILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLS 191 (520)
Q Consensus 112 Pi~vKD~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~rLr~aGaii~GkTn~~E~a~~~~~~~~~~~n~~~G~t~NP~~~~ 191 (520)
||+|||||+++| ++||+||..+.+++|.+||++|+|||+||||++||||||||++ +..++|++||+|+||||++
T Consensus 92 Pi~vKD~i~v~G-~~Tt~Gs~~~~~~~~~~DA~vV~rLr~AGAvilGKTn~~Efa~-----~~~~~n~~~G~t~NP~~~~ 165 (521)
T 3a1k_A 92 RVAIKDNVTVAG-VPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLCF-----SGSSFTPASGPVRNPWDRQ 165 (521)
T ss_dssp EEEEETTBCCTT-SCBCTTCTTTTTBCCSSCCHHHHHHHHTTCEEEEEECCCGGGC-----CSSSSCCTTCCCEETTEEE
T ss_pred EEEEEcCcccCC-cccCCCChhhcCCCCCCchHHHHHHHHCCCEEEEeeChhhHhh-----CCCCCCCCCCCcCCCCCCC
Confidence 999999999996 9999999999999999999999999999999999999999998 6788999999999999999
Q ss_pred CCCCCCChhHHHHHhcCCcceeeccccCCccccccccCCceeecCCCCcccCCCCCCCCCCCcccccccCCHHHHHHHHH
Q 009991 192 ADPWGSSSGSAISVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLD 271 (520)
Q Consensus 192 ~~pGGSSgGsAaaVAag~~~~alGtDtgGSiRiPAa~~Gv~GlKPT~G~vs~~G~~p~~~~~d~~Gp~aRsv~D~a~~~~ 271 (520)
|+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||+|++++++
T Consensus 166 ~~pGGSSgGSAAAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~ 245 (521)
T 3a1k_A 166 REAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLS 245 (521)
T ss_dssp EECCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHHHHHHHH
T ss_pred CCCCCCCchHHHHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCccccccCCCCCCccccccCCCCCCcEEEEECCCccCCCCChHHHHHHHHHHHHHHHCCCEEEeecccCc
Q 009991 272 AIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGALVIDHLEIAN 351 (520)
Q Consensus 272 ~l~g~d~~d~~~~~~~~~~p~~~~~~~l~~~~~~~lRIgv~~~~~~~~~~d~~v~~a~~~a~~~L~~~G~~vve~~~~p~ 351 (520)
+|+|+|+.|+.+... .|..+|.+.+. .+++++||||+.+.+....++++++++++++++.|+++||+|+| +++|.
T Consensus 246 vlag~d~~D~~~~~~---~~~~~~~~~l~-~~~~~lrIgv~~~~~~~~~~~~~v~~a~~~a~~~L~~~Ga~v~e-v~~p~ 320 (521)
T 3a1k_A 246 VIAGRDGNDPRQADS---VEAGDYLSTLD-SDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGCTVEE-VNIPW 320 (521)
T ss_dssp HHCSCCSSCTTSCTT---CCCCCSSTTTT-SCCTTCEEEEEGGGSCCSSSCHHHHHHHHHHHHGGGGGTCEEEE-ECCTH
T ss_pred HHhCCCCCCcccccc---CCCcchhhhhc-cCccCcEEEEECccccccCCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCc
Confidence 999999988765221 12224655544 35789999999875433357999999999999999999999988 67775
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHhc-cC--CcccHHHHHHhhccccchHHHHhhcHHHHHh---hhh-cCCCcH
Q 009991 352 VNSKNSISNDETIAMLAEFKLALNAYLKELV-TS--PVRSLAEVIAFNNKFSDLEKIKEYGQDLLLS---AEA-TDGIGK 424 (520)
Q Consensus 352 ~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~ 424 (520)
..... ..+..+...+...++..+..... .. ....+.+....... .....+++.+... ... ...+..
T Consensus 321 ~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~g~~~~~~~~~ 393 (521)
T 3a1k_A 321 HLHAF---HIWNVIATDGGAYQMLDGNGYGMNAEGLYDPELMAHFASRRI----QHADALSETVKLVALTGHHGITTLGG 393 (521)
T ss_dssp HHHHH---HHHHHHHHHHHHHHTTTTTTTCSSSCSCCCHHHHHHHHHHHH----HSGGGSCHHHHHHHHHHHHHHTTTTT
T ss_pred hHhHH---HHHHHHHHHHHHhhhhhccccccchhhhhhHHHHHHHHHHhh----hhhhhcCHHHHHHHHhchhhhccCCH
Confidence 43221 11112212222111100000000 00 00011111100000 0011222222211 111 122333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCEEEecCcc-------------------------hhhhhhhcCCCeeeeccCCC
Q 009991 425 TEKAAILNLERFTRDGFEKLMSTNNLDALVTPRSY-------------------------ASTLLAVGGFPGINVPAGYD 479 (520)
Q Consensus 425 ~~~~a~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~-------------------------~t~~~nl~G~PaisvP~G~~ 479 (520)
.++...++.+..+++.++++|++ +|+||+|+++ +|.+||++|+|+||||+|+
T Consensus 394 ~~~~~a~~~r~~~~~~~~~~~~~--~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~- 470 (521)
T 3a1k_A 394 ASYGKARNLVPLARAAYDTALRQ--FDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGL- 470 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--CSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEEEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC--CCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcEEeeccc-
Confidence 34444455566667789999985 9999999974 2568999999999999999
Q ss_pred CCCCceeEEEEccCCChHHHHHHHHHHHH-HcCCCCC
Q 009991 480 SEGVPFGICFGGLKGTEPKLIEIAYGFEQ-ATKIRKP 515 (520)
Q Consensus 480 ~~GlPvGlQlvg~~~~D~~LL~~A~~lE~-~~~~~~~ 515 (520)
.+|||+||||||++|+|++||++|++||+ ..+|+.+
T Consensus 471 ~~GlPvGlQlvg~~~~d~~LL~~A~~~E~~~~~~~~~ 507 (521)
T 3a1k_A 471 VNGLPVGMMITGRHFDDATVLRVGRAFEKLRGAFPTP 507 (521)
T ss_dssp ETTEEEEEEEECSTTCHHHHHHHHHHHHHHHCCCCCT
T ss_pred CCCCCeeEEEEcCCCCHHHHHHHHHHHHHhhcccCCc
Confidence 68999999999999999999999999999 7787763
No 11
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=52.97 E-value=18 Score=25.62 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=24.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 009991 44 IKDLQLAFKQNKLTSRQLVEFYLGEIHR 71 (520)
Q Consensus 44 ~~~l~~~~~~g~~s~~e~~~~~l~ri~~ 71 (520)
+.++.+.+-.|++|..++++.+.+||.+
T Consensus 32 ~l~~~erwv~GEis~~e~i~~~~~r~~~ 59 (61)
T 3shg_B 32 VVAQMERVVVGELETSDVIKDLMERIKR 59 (61)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc
Confidence 4456778889999999999999999975
No 12
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=32.71 E-value=27 Score=23.84 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=29.9
Q ss_pred CCcccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 009991 34 IHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRL 72 (520)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~ 72 (520)
.+..++..+++.+|.+.++.+.++..-.-...++|+..+
T Consensus 5 ~s~~~~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~ 43 (50)
T 1zrj_A 5 SSGMDVRRLKVNELREELQRRGLDTRGLKAELAERLQAA 43 (50)
T ss_dssp SCCCCGGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHH
T ss_pred cCcCCHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 346788899999999999999888754455566666654
No 13
>3obf_A Putative transcriptional regulator, ICLR family; structural genomics, PSI-2, protein structure initiative; 2.16A {Arthrobacter aurescens}
Probab=27.85 E-value=68 Score=27.58 Aligned_cols=48 Identities=17% Similarity=0.095 Sum_probs=34.7
Q ss_pred hcCCCeeeeccCCCCCCCce-eEEEEccC--CChH-------HHHHHHHHHHHHcCCCC
Q 009991 466 VGGFPGINVPAGYDSEGVPF-GICFGGLK--GTEP-------KLIEIAYGFEQATKIRK 514 (520)
Q Consensus 466 l~G~PaisvP~G~~~~GlPv-GlQlvg~~--~~D~-------~LL~~A~~lE~~~~~~~ 514 (520)
..|.-+|++|+ ++.+|-++ +|.+.|+. .++. .|.+.|..+++.++++.
T Consensus 118 ~~g~~~iAaPI-~~~~g~~~aalsv~~p~~r~~~~~~~~~~~~l~~aa~~is~~lg~~~ 175 (176)
T 3obf_A 118 SIEEVGVASPV-YDHRGNMVASVLIPAPKFRVSQDTLNSLGEACAAAAAKVTTRLGGRA 175 (176)
T ss_dssp STTEEEEEEEE-ECTTSCEEEEEEEEEEGGGCCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ccCcEEEEEEE-ECCCCCEEEEEEeEeehhhCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 35888999999 56678776 57777754 4444 46678888988887754
No 14
>1tf1_A Negative regulator of allantoin and glyoxylate utilization operons; midwest center for structural genomics, GLCR, ligand binding domain; 1.80A {Escherichia coli} SCOP: d.110.2.2
Probab=27.03 E-value=64 Score=28.53 Aligned_cols=50 Identities=26% Similarity=0.350 Sum_probs=35.0
Q ss_pred hcCCCeeeeccCCCCCCCce-eEEEEccCC--Ch-------HHHHHHHHHHHHHcCCCCCC
Q 009991 466 VGGFPGINVPAGYDSEGVPF-GICFGGLKG--TE-------PKLIEIAYGFEQATKIRKPP 516 (520)
Q Consensus 466 l~G~PaisvP~G~~~~GlPv-GlQlvg~~~--~D-------~~LL~~A~~lE~~~~~~~~P 516 (520)
.-|.-+|++|+ ++.+|-++ +|.+.++.. ++ ..|.+.|..+++.++++.+|
T Consensus 139 ~~gv~~iAaPI-~~~~g~~~aalsvs~p~~r~~~~~~~~~~~~l~~aA~~Is~~lg~~~~~ 198 (198)
T 1tf1_A 139 VVGLNCIASAI-YDDVGSVVAAISISGPSSRLTEDRFVSQGELVRDTARDISTALGLKAHP 198 (198)
T ss_dssp STTEEEEEEEE-ECTTSCEEEEEEEEEETTTSCGGGHHHHHHHHHHHHHHHHHHHTCCC--
T ss_pred ccCceEEEEEE-ECCCCCEEEEEEEeeehHhCCHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 35788999999 56677776 577777643 33 34677889999988876554
No 15
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=26.47 E-value=27 Score=24.37 Aligned_cols=39 Identities=5% Similarity=0.150 Sum_probs=27.6
Q ss_pred CCcccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q 009991 34 IHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRL 72 (520)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~ 72 (520)
+...++..+++.+|.+.++.+.++..-.-..+++||..+
T Consensus 5 ~~~~~l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~ 43 (55)
T 2do1_A 5 SSGVELHKLKLAELKQECLARGLETKGIKQDLIHRLQAY 43 (55)
T ss_dssp CCCCCTTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHH
T ss_pred ccccCHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 346678899999999999988887643334455555543
No 16
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=21.08 E-value=1.3e+02 Score=27.88 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=38.2
Q ss_pred hcCCCeeeeccCCCCCCCce-eEEEEccC--CChH-------HHHHHHHHHHHHcCCCCCCCC
Q 009991 466 VGGFPGINVPAGYDSEGVPF-GICFGGLK--GTEP-------KLIEIAYGFEQATKIRKPPSF 518 (520)
Q Consensus 466 l~G~PaisvP~G~~~~GlPv-GlQlvg~~--~~D~-------~LL~~A~~lE~~~~~~~~P~~ 518 (520)
..|.-+|++|+ ++.+|-++ +|.+.|+. .+++ .|.+.|..+++.++++.|+.+
T Consensus 193 ~~g~~~iAaPI-~~~~g~~~aalsvs~p~~r~~~~~~~~~~~~l~~aA~~Is~~lg~~~~~~~ 254 (260)
T 3r4k_A 193 EAEVHSHAVPI-FGPDRAVLGALAVAAPTSRMTPDQKRTIPPALRAAGLSLTERIGGACPPEF 254 (260)
T ss_dssp STTEEEEEEEE-ECTTSCEEEEEEEEEEGGGCCHHHHHHHHHHHHHHHHHHHHHTTCCCCTTS
T ss_pred ccCceEEEEEE-ECCCCCEEEEEEEEEehHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 45888999999 56678776 47777664 4453 567889999999988766543
Done!