RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 009991
(520 letters)
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional.
Length = 491
Score = 450 bits (1159), Expect = e-155
Identities = 204/490 (41%), Positives = 286/490 (58%), Gaps = 21/490 (4%)
Query: 39 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLN---PLLHGVIEVNPDALSQADKADY 95
+E TI D+Q A + KLTS++LV +YL I + + P ++ ++E+NPDA+ A+ D+
Sbjct: 10 QKELTIHDIQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINPDAIFIAEALDH 69
Query: 96 ERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAI 155
ERK+K LHGIP+LLKDNI T D M+T+AG+ AL + DA +VTKLREAGA+
Sbjct: 70 ERKIKGVRGP--LHGIPVLLKDNIETNDSMHTSAGTIALEQHISSEDAFLVTKLREAGAV 127
Query: 156 ILGKASLSEWANFRSSNAPNGFCARGGQGKNPY---VLSADPWGSSSGSAISVAGNLVAV 212
ILGKA+++E ANF S G+ ARGGQ NPY GSS+GSAI+VA N V
Sbjct: 128 ILGKANMTELANFMSFEMWAGYSARGGQTINPYGTGEDDMFVGGSSTGSAIAVAANFTVV 187
Query: 213 SLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDA 272
S+GTETDGSILSP+ NSVVGIKPTVGL SR G+IP T QD+ GP RTV DA +L +
Sbjct: 188 SVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTVTDAAILLGS 247
Query: 273 IAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQ-VFDH 331
+ G D D T S+ I Y +++ +GL G ++GV N + + +F
Sbjct: 248 LTGVDEKDVVT-HKSEGIAEHDYTKYLDANGLNGAKIGVYNNAPKEYYESGEYDEKLFKE 306
Query: 332 HLQTLRQEGALVIDHLEIANVNSKNSISNDETIAMLAEFKLALNAYLKEL-VTSPVRSLA 390
++ LR EGA V++ ++I + + + S +L E K +L+ YL +L T PV S++
Sbjct: 307 TIEVLRSEGATVVEDIDIPSFHREWSWG-----VLLYELKHSLDNYLSKLPSTIPVHSIS 361
Query: 391 EVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTE---KAAILNLERFTRDGFEKLMST 447
E++ FN + E+ +YGQ L + + A + ++ G + +
Sbjct: 362 ELMEFN--ENIAERALKYGQTKLERRKDFPNTLRNPEYLNARLEDIYFSQEQGIDFALEK 419
Query: 448 NNLDALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFE 507
NLDA++ P ST+ A G+P I +PAGY G PFGI +E LI++AY FE
Sbjct: 420 YNLDAILFPSYIGSTICAKAGYPSIAIPAGYMEGGRPFGITLASTAFSEGTLIKLAYAFE 479
Query: 508 QATKIRKPPS 517
QATK RK P
Sbjct: 480 QATKHRKIPG 489
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional.
Length = 497
Score = 436 bits (1124), Expect = e-149
Identities = 213/509 (41%), Positives = 283/509 (55%), Gaps = 41/509 (8%)
Query: 37 FPIREATIKDLQLAFKQNKLTSRQLVEFYLGEI---HRLNPLLHGVIEVNPDALSQADKA 93
E LQ A + QL YL I R P L+ VIE+NPDA + A
Sbjct: 1 QTALEERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPDAEADAAAL 60
Query: 94 DYERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAG 153
D ERK LHGIP+LLKDNI D M TTAGS AL G+ RDA +V +LR+AG
Sbjct: 61 DAERKAGKVRGP--LHGIPVLLKDNIDAADPMPTTAGSLALAGNRPTRDAFLVARLRDAG 118
Query: 154 AIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVS 213
A+ILGKA+LSEWANFRS+ + +G+ ARGG +NPY L P GSSSGS +VA L AV+
Sbjct: 119 AVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRSPCGSSSGSGAAVAAGLAAVA 178
Query: 214 LGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAI 273
+GTETDGSI P++ N +VG+KPTVGL SR G++P++ QD+ GP+ RTVADA VL AI
Sbjct: 179 IGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVADAAAVLTAI 238
Query: 274 AGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSP-LAQVFDHH 332
AG D DPAT++A P Y + L+G RLGV RN P + F+
Sbjct: 239 AGGDPADPATASAPA--PAVDYVAALDADALRGARLGVARNYL----GYHPEVDAQFERA 292
Query: 333 LQTLRQEGALVIDHLEIANVNSKNSISNDETIAMLAEFKLALNAYL-KELVTSPVRSLAE 391
L L+ GA+VID +++ E + +L EFK LNAYL +PVR+LA+
Sbjct: 293 LAELKAAGAVVIDVVDLD----DGDWGEAEKVVLLHEFKAGLNAYLRSTAPHAPVRTLAD 348
Query: 392 VIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTR----DGFEKLMST 447
+IAFN E + +GQ+L A+A G+ + A + L R +G + +
Sbjct: 349 LIAFNRAQHARE-MPYFGQELFEQAQAAPGL--DDPAYLDALADAKRLAGPEGIDAALKE 405
Query: 448 NNLDALVTPRS----------------YASTLLAVGGFPGINVPAGYDSEGVPFGICFGG 491
+ LDALV P + +ST AV G+P + VP G +G+P G+ F G
Sbjct: 406 HRLDALVAPTTGPAWLIDLINGDSFGGSSSTPAAVAGYPHLTVPMGQ-VQGLPVGLSFIG 464
Query: 492 LKGTEPKLIEIAYGFEQATKIRKPPSFKS 520
+E +L+E+ Y +EQAT R+ P F
Sbjct: 465 AAWSEARLLELGYAYEQATHARREPRFVE 493
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 352 bits (905), Expect = e-116
Identities = 175/498 (35%), Positives = 278/498 (55%), Gaps = 19/498 (3%)
Query: 24 LLAISAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEI--HRLNPL-LHGVI 80
L I+ ++ I + AT+ +LQ KL+ +L YL I H N + L+ V
Sbjct: 53 LKGINIENVKIKEKEVVNATVDELQKMIDDGKLSYEELTSIYLFRIQEHDQNGITLNSVT 112
Query: 81 EVNPDALSQADKADYERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVP 140
E+NP+A+ +A K D ER + S L+GIP+++KDN+ T M T+AG+Y L +
Sbjct: 113 EINPNAMEEARKLDQERS-RNKKS--NLYGIPVVVKDNVQTAKVMPTSAGTYVLKDWIAD 169
Query: 141 RDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPY-VLSADPWGSSS 199
+DA +V +L+E GA +LGKA++SEWAN+ S P+G+ + GQ NPY + D GSSS
Sbjct: 170 QDATIVKQLKEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQNLNPYGPIKFDTSGSSS 229
Query: 200 GSAISVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPI 259
GSA VA + +++GTET GSI++P++ SVVG++P++G+ SR G+IPL D+ GP+
Sbjct: 230 GSATVVAADFAPLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPM 289
Query: 260 CRTVADAVYVLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNI 319
RTV DA + +A+ G+D D + K Y + + GLKGK++G++ +
Sbjct: 290 ARTVKDAATLFNAMIGYDEKD-VMTEKVKDKERIDYTKDLSIDGLKGKKIGLLFSV---D 345
Query: 320 LKGSPLAQVFDHHLQTLRQEGALVIDHLEIANVNSKNSISNDETIAMLAEFKLALNAYLK 379
+ V + + L+ GA++ D++++ + + N +T+ EFK +N Y
Sbjct: 346 QQDENRKAVAEKIRKDLQDAGAILTDYIQL----NNGGVDNLQTLEY--EFKHNVNDYFS 399
Query: 380 ELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRD 439
+ PV+SL E+IAFN K D ++ +YGQ L+ ++E + + + + +
Sbjct: 400 QQKNVPVKSLEEIIAFNKK--DSKRRIKYGQTLIEASEKSAITKDEFEKVVQTSQENAKK 457
Query: 440 GFEKLMSTNNLDALVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKL 499
++ + LDALV + L AV G+P + VPAGYD+ G P G F G + E +L
Sbjct: 458 ELDRYLVEKGLDALVMINNEEVLLSAVAGYPELAVPAGYDNNGEPVGAVFVGKQFGEKEL 517
Query: 500 IEIAYGFEQATKIRKPPS 517
I Y +EQ +K RKPP
Sbjct: 518 FNIGYAYEQQSKNRKPPK 535
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure
and biogenesis].
Length = 475
Score = 289 bits (741), Expect = 3e-92
Identities = 155/509 (30%), Positives = 228/509 (44%), Gaps = 70/509 (13%)
Query: 39 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDA---LSQADKADY 95
+ E T +L + +L++ +LVE YL I LNP L+ + V+P+A L++A AD
Sbjct: 4 LTELTAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAAD- 62
Query: 96 ERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAI 155
++ A L L G+PI +KDNI T + TTAGS AL V P DA VV +LR AGA+
Sbjct: 63 -ARLAAGEPLGPLAGVPIAVKDNIDTAG-LPTTAGSKALEDYVPPYDATVVERLRAAGAV 120
Query: 156 ILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVSLG 215
ILGK ++ E+A SS + F G +NP+ L P GSS GSA +VA LV ++LG
Sbjct: 121 ILGKTNMDEFA-MGSSTENSAF----GPTRNPWNLERVPGGSSGGSAAAVAAGLVPLALG 175
Query: 216 TETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAG 275
++T GSI P++ +VG+KPT G SR GV+PL D +GP+ RTV DA +LD IAG
Sbjct: 176 SDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAG 235
Query: 276 FDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQT 335
D D P K LKG R+GV + + F+ ++
Sbjct: 236 PDPRDSPLPPPPPVPPALAGK------DLKGLRIGVPKELGGGGPLDPDVRAAFEAAVKA 289
Query: 336 LRQEGALVIDHLEIANVNSKNSISNDETIAMLAEFK-LALNAYLKELVTSPVRSLAEVIA 394
L GA V++ +++ AL AY L
Sbjct: 290 LEAAGAEVVE------------------VSLPLLSDDYALAAYYLARFDGERYGLRAADL 331
Query: 395 FNNKFSDLEKIKEYGQDLLLSAE---ATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLD 451
+ + E + ++ + + A + R F+KL +D
Sbjct: 332 YGKTRA--EGFGPEVKRRIMLGTYLLSAGYYDAYYRRA---QKTLIRRAFDKLFE--EVD 384
Query: 452 ALVTP-----------------------RSYASTLLA-VGGFPGINVPAGYDSEGVPFGI 487
L+TP T+ A + G P I+VPAG+ ++G+P G+
Sbjct: 385 VLLTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFTADGLPVGL 444
Query: 488 CFGGLKGTEPKLIEIAYGFEQATKIRKPP 516
G + L+ +A EQA + P
Sbjct: 445 QLIGPAFDDATLLRLAAALEQALGWHRRP 473
>gnl|CDD|216494 pfam01425, Amidase, Amidase.
Length = 431
Score = 249 bits (638), Expect = 2e-77
Identities = 153/465 (32%), Positives = 207/465 (44%), Gaps = 60/465 (12%)
Query: 61 LVEFYLGEIHRLNPLLHGVIEV-NPDALSQADKADYERKVKAPGSLPGLHGIPILLKDNI 119
LVE YL NP L+ + V +AL+QA AD R A LHG+PI LKDNI
Sbjct: 2 LVEAYLDRAEAANPKLNAFVTVFFEEALAQAKAADKRR---ARKEKGPLHGVPISLKDNI 58
Query: 120 ATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCA 179
K + TTAGS AL G P DA VV +LR AGA+ILGK ++ E+A ++ + F
Sbjct: 59 DVKG-VPTTAGSKALEGYPPPYDATVVERLRAAGAVILGKTNMDEFAMGSTTE-NSAF-- 114
Query: 180 RGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVG 239
G +NP+ LS P GSS GSA +VA LV +++GT+T GSI P++ +VG+KPT G
Sbjct: 115 --GPTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCGLVGLKPTYG 172
Query: 240 LTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDHNDPATSAASKYIPHGGYKQFI 299
SR GV+P + D VGP+ RTV DA +LD IAG+D DP S P + + +
Sbjct: 173 RVSRYGVVPYSSSLDHVGPLARTVEDAALLLDVIAGYDPADP----TSAPSPVPDFAEPL 228
Query: 300 KPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGALVIDHLEIANVNSKNSIS 359
K LKG R+GV R F + + L G V++ S
Sbjct: 229 KKS-LKGLRIGVPRE-DFYFSLDPEVQRAVRKAAAALEALGHEVVE----VEPPSLKHAL 282
Query: 360 NDETIAMLAEFKLALNAYLKELVTSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEAT 419
I AE L + L EL L L + +L A +
Sbjct: 283 PLYYIIAPAEASSNL-SDLDELYPRIRDEL------------LGDEVKRRIELGAYALSA 329
Query: 420 DGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTP-------------RSYAST---- 462
G A + R R F L LD L++P S
Sbjct: 330 GYSGAYYLKAQ-KVRRLLRREFAGLFEE--LDVLLSPTTPTPAPRLGEAADSPTVLYNLL 386
Query: 463 -------LLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLI 500
+ G P I++PAG+ +G+P G+ G G + L+
Sbjct: 387 DFTANTVPANLAGLPAISLPAGFSEDGLPVGLQIIGPPGDDETLL 431
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 241 bits (615), Expect = 3e-72
Identities = 155/484 (32%), Positives = 260/484 (53%), Gaps = 39/484 (8%)
Query: 42 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNP---LLHGVIEVNPDALSQADKADYERK 98
A + LQ +L+ ++L YL I + + L+ + E+NP +++A++ D E
Sbjct: 165 ADVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPTIIAEAEQLDKENT 224
Query: 99 VKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILG 158
L+G+P+LLKDNI TK+ + T+AG+ AL V+ +DA +V L+ GA+ILG
Sbjct: 225 TNKSA----LYGMPVLLKDNIGTKE-LPTSAGTVALKDWVIGKDATIVENLKANGALILG 279
Query: 159 KASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVSLGTET 218
K ++SEWA + PNG+ + GQ KNPY + DP GSSSGSA + + A+++GTET
Sbjct: 280 KTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDPSGSSSGSATAATSDFAAIAIGTET 339
Query: 219 DGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDH 278
+GSI++P+S+ S VG KP+ GL + G+IPL+ R D+ GP+ RTV DA +A+
Sbjct: 340 NGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTVNDAYLTTNALTNTTS 399
Query: 279 NDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQ 338
N P ++ A LKGKR+G++ + + + V L++
Sbjct: 400 NPPLSTDA-----------------LKGKRIGLLADG-----ESNEETAVIKKIKLDLQK 437
Query: 339 EGALVIDHLEIANVNSKNSISNDETIAMLAEFKLALNAYLKELVTSPVRSLAEVIAFNNK 398
GA +I+ + + K++ D + A+FK LN +L ++ SP+ +L +I FN
Sbjct: 438 AGATIIEGIAVGEFEQKDT---DYASLLNADFKHDLNQFL-QVNHSPMSTLESIIQFNQ- 492
Query: 399 FSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRS 458
++ + +YGQ L+ ++ + + NL + +++ + ++ + LDA+VT
Sbjct: 493 -TNPTRNMKYGQSELVKSQQSTITKQQADNLASNLIQSSQNELDSVLQKDKLDAVVTIGM 551
Query: 459 YAST--LLAVGGFPGINVPAGYDSE-GVPFGICFGGLKGTEPKLIEIAYGFEQATKIRKP 515
S L + G P + +PAGYD E P + F + ++ L+ + Y +EQ +K RK
Sbjct: 552 GGSVMFLAPIAGNPELTIPAGYDEESNQPISLTFITARNSDKILLNMGYAYEQQSKNRKS 611
Query: 516 PSFK 519
P+ K
Sbjct: 612 PNLK 615
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed.
Length = 459
Score = 218 bits (559), Expect = 2e-65
Identities = 115/304 (37%), Positives = 164/304 (53%), Gaps = 20/304 (6%)
Query: 52 KQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAPGSLPGLHG 110
K ++++ +L + YL I ++P L+ I V + AL+QA AD + A G L G
Sbjct: 2 KNKEISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKL---AAGEAGPLAG 58
Query: 111 IPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRS 170
IPI +KDNI TK + TT S L V P DA VV KL+ AGA+ILGK ++ E+A S
Sbjct: 59 IPIAIKDNICTKG-IRTTCASKILENYVPPYDATVVEKLKAAGAVILGKTNMDEFA-MGS 116
Query: 171 SNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVSLGTETDGSILSPSSSNS 230
S + F G KNP+ L P GSS GSA +VA L +LG++T GSI P++
Sbjct: 117 STENSAF----GPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGSIRQPAAFCG 172
Query: 231 VVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDHNDPATSAASKYI 290
VVG+KPT G SR G+I D +GP RTV DA +L+AIAG D D +TSA +
Sbjct: 173 VVGLKPTYGRVSRYGLIAFASSLDQIGPFARTVEDAALLLNAIAGHDPKD-STSAD---V 228
Query: 291 PHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGALVID----H 346
P Y + +KG ++GV + +F + + + ++ L GA +++ H
Sbjct: 229 PVPDYTAALGK-DIKGLKIGVPKE-YFGEGLDPEVKEAVEAAIKKLEDLGAEIVEVSLPH 286
Query: 347 LEIA 350
+ A
Sbjct: 287 TKYA 290
Score = 37.8 bits (89), Expect = 0.013
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 23/91 (25%)
Query: 438 RDGFEKLMSTNNLDALVTPRS-----------------YASTLLAV----GGFPGINVPA 476
+ FEK +D ++ P + Y S + V G P I+VPA
Sbjct: 371 KQDFEKAF--EKVDVILGPTAPTTAFKIGEKTDDPLAMYLSDIFTVPANLAGLPAISVPA 428
Query: 477 GYDSEGVPFGICFGGLKGTEPKLIEIAYGFE 507
G+D G+P G+ G E L+ +AY FE
Sbjct: 429 GFDDGGLPVGLQLIGKYFDEETLLNVAYAFE 459
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 208 bits (532), Expect = 2e-61
Identities = 158/511 (30%), Positives = 233/511 (45%), Gaps = 78/511 (15%)
Query: 39 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYER 97
+ ++ + A + +L+ +LVE L L PL + V+ + AL+ A + D +R
Sbjct: 8 VASLSLTEAAAALRSGRLSCLELVEALLARAAALAPL-NAFTTVDAEGALAAARRIDAQR 66
Query: 98 KVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIIL 157
A G+ L G+PI++KDNI T M TTAG+ ALLG V DA VV +L +AGA+ L
Sbjct: 67 ---AAGAALLLAGVPIVIKDNINTAG-MPTTAGTPALLGFVPATDAPVVQRLLDAGAVPL 122
Query: 158 GKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVSLGTE 217
GKA++ E A +SN NG G +NPY + GSS G+A +VA L LGT+
Sbjct: 123 GKANMHELAFGITSN--NGA---FGAVRNPYDPARIAGGSSGGTAAAVAARLAPAGLGTD 177
Query: 218 TDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFD 277
T GS+ P++ VVG++PTVG S GV+P++ +D+VGPI R+VAD +LDA+
Sbjct: 178 TGGSVRIPAALCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIARSVADLA-LLDAVI--- 233
Query: 278 HNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLR 337
D A A P L G RLGV PF++ L +A V + L L
Sbjct: 234 TGDAALPA---------------PVALAGLRLGVPAAPFWDGLDPD-VAAVAEAALAKLA 277
Query: 338 QEGA-LV-IDHLEIANVNSKNSISNDETIAMLAEFKLALNAYLKE-LVTSPVRSLAEVIA 394
G V +D + +N IA L E L AYL+E L IA
Sbjct: 278 AAGVTFVELDLPGLHELNEAVGF----PIA-LYEALADLRAYLRENGAGVSFEELVARIA 332
Query: 395 FNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFT-RDGFEKLMSTNNLDAL 453
S ++ +DLL I + A L++ R + + + + + LDA+
Sbjct: 333 -----SP--DVRAIFRDLLDP----PQISEDAYRAALDVGRPRLQAWYRQAFARHGLDAI 381
Query: 454 VTPR------------------SYASTLLAV---------GGFPGINVPAGYDSEGVPFG 486
+ P + T V G PG+++PAG G+P G
Sbjct: 382 LFPTTPLTAPPIGDDDTVILNGAAVPTFARVIRNTDPASNAGLPGLSLPAGLTPHGLPVG 441
Query: 487 ICFGGLKGTEPKLIEIAYGFEQATKIRKPPS 517
+ G G++ +L+ I E+ P
Sbjct: 442 LELDGPAGSDRRLLAIGRALERVLGRLPAPD 472
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
A subunit. In many species, Gln--tRNA ligase is
missing. tRNA(Gln) is misacylated with Glu after which a
heterotrimeric amidotransferase converts Glu to Gln.
This model represents the amidase chain of that
heterotrimer, encoded by the gatA gene. In the Archaea,
Asn--tRNA ligase is also missing. This amidase subunit
may also function in the conversion of Asp-tRNA(Asn) to
Asn-tRNA(Asn), presumably with a different recognition
unit to replace gatB. Both Methanococcus jannaschii and
Methanobacterium thermoautotrophicum have both authentic
gatB and a gatB-related gene, but only one gene like
gatA. It has been shown that gatA can be expressed only
when gatC is also expressed. In most species expressing
the amidotransferase, the gatC ortholog is about 90
residues in length, but in Mycoplasma genitalium and
Mycoplasma pneumoniae the gatC equivalent is as the
C-terminal domain of a much longer protein. Not
surprisingly, the Mycoplasmas also represent the most
atypical lineage of gatA orthology. This orthology group
is more narrowly defined here than in Proc Natl Acad Aci
USA 94, 11819-11826 (1997). In particular, a Rhodococcus
homolog found in association with nitrile hydratase
genes and described as an enantiomer-selective amidase
active on several 2-aryl propionamides, is excluded
here. It is likely, however, that the amidase subunit
GatA is not exclusively a part of the Glu-tRNA(Gln)
amidotransferase heterotrimer and restricted to that
function in all species [Protein synthesis, tRNA
aminoacylation].
Length = 460
Score = 208 bits (531), Expect = 2e-61
Identities = 153/493 (31%), Positives = 236/493 (47%), Gaps = 63/493 (12%)
Query: 47 LQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAPGSL 105
L+ K+ +++ ++++E L I ++ +EV + AL QA K ++ + P
Sbjct: 1 LRQLLKKKEISIKEVLEASLDRIEANKDKINAFLEVTVEKALKQAKK--LDKAILTP--- 55
Query: 106 PGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEW 165
L GIPI +KDNI+TK + TT S L + P DA V+ +L++AGA+I+GK ++ E+
Sbjct: 56 --LAGIPIAVKDNISTKG-IVTTCASKILENYIPPYDATVIERLKQAGALIIGKTNMDEF 112
Query: 166 ANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVSLGTETDGSILSP 225
A SS + F G KNP+ L P GSS GSA +VA +L SLG++T GSI P
Sbjct: 113 A-MGSSTETSAF----GPTKNPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGSIRQP 167
Query: 226 SSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDHNDPATSA 285
+S VVG KPT G SR G++ D +GP RTV D +LD I+G D D TSA
Sbjct: 168 ASFCGVVGFKPTYGRVSRYGLVAYASSLDQIGPFARTVEDIALLLDVISGHDKRDS-TSA 226
Query: 286 ASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGALVID 345
P + + +K LKG ++GVV+ F + + + F++ L+ L + GA ++
Sbjct: 227 KV---PDPEFFEELKKD-LKGLKVGVVK-EFSEEM-DKEVQEKFENALEVLEELGAEIV- 279
Query: 346 HLEIANVNSKNSISNDETIAMLAEFKLALNAY------LKELVTSPVRSLAEVIAFN--N 397
E++ + K ++ I+ +E L Y + SL E+ A
Sbjct: 280 --EVSFPHVKYALPIYYIISP-SEASSNLARYDGIRYGYR---IEEPNSLKELYAKTRAE 333
Query: 398 KFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPR 457
F + K + + LSA D KA + D F KL +D +V+P
Sbjct: 334 GFGEEVKRRIMLGNYALSAGYYDKY--YLKA--QKVRTLIIDDFLKLFE--EVDVIVSPT 387
Query: 458 S-----------------YASTLLAVG----GFPGINVPAGYDSEGVPFGICFGGLKGTE 496
+ Y S +L V G P I+VP G +G+P G+ G +
Sbjct: 388 APTLPFKIGEKLDDPLEMYLSDILTVPANLAGLPAISVPCGVKEKGLPIGLQIIGKCFDD 447
Query: 497 PKLIEIAYGFEQA 509
L++++Y FEQA
Sbjct: 448 KTLLQVSYAFEQA 460
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional.
Length = 454
Score = 147 bits (374), Expect = 4e-39
Identities = 108/346 (31%), Positives = 158/346 (45%), Gaps = 59/346 (17%)
Query: 42 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGV---IEVNPD-ALSQADKADYER 97
T+ L + TSR LVE L I P G V+ D A + AD AD R
Sbjct: 6 PTLAALAADLAAGRTTSRALVEAALARIAD--PAGEGARVFTHVDADAARAAADAADALR 63
Query: 98 KVKAPGSLPGLHGIPILLKD--NIATKDKMNTTAGSYALLGSVV-PRDAGVVTKLREAGA 154
A S L GIP+ +KD ++A T AGS L + DA V +LR AGA
Sbjct: 64 AAGAAPSP--LAGIPVSVKDLFDVA---GQVTRAGSRVLADAPPAAADAPAVARLRRAGA 118
Query: 155 IILGKASLSEWANFRSSNAPNGFCARG-----GQGKNPYVLSAD----PWGSSSGSAISV 205
+++G+ +++E+A F G G +NP+ P GSSSG+A+SV
Sbjct: 119 VLIGRTNMTEFA----------FSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSGAAVSV 168
Query: 206 AGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVAD 265
A + A +LGT+T GSI P++ + G KPT G +PL+ DS+GP+ R+VA
Sbjct: 169 ADGMAAAALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLARSVAC 228
Query: 266 AVYVLDAI-AGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSP 324
++DA+ AG + PA L+G RL V + L +
Sbjct: 229 CA-LVDAVLAGEEPVVPA------------------ARPLEGLRLAVPTTVVLDGLD-AT 268
Query: 325 LAQVFDHHLQTLRQEGALVID-----HLEIANVNSKNSISNDETIA 365
+A F+ L+ L GA++ + E+A +N+K S E+ A
Sbjct: 269 VAAAFERALKRLSAAGAIIEEIAFPELAELAEINAKGGFSAAESYA 314
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional.
Length = 465
Score = 132 bits (333), Expect = 2e-33
Identities = 85/245 (34%), Positives = 127/245 (51%), Gaps = 14/245 (5%)
Query: 42 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVK 100
+ ++ A + +L++R + + L I R NP L+ V + AL++A + D R
Sbjct: 7 LSAAEIAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAARAAG 66
Query: 101 APGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVP--RDAGVVTKLREAGAIILG 158
P L L G+P +K N+ + T AGS + P RDA V +L AGA+++G
Sbjct: 67 EP--LGPLAGVPFAVK-NLFDVAGLTTLAGS-KINRDRPPATRDATAVRRLEAAGAVLVG 122
Query: 159 KASLSEWA-NFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVSLGTE 217
++ E+A F + N+ G +NP+ L+ GSS GSA +VA LV +LG++
Sbjct: 123 ALNMDEYAYGFTTENSHYG------ATRNPHDLTRIAGGSSGGSAAAVAAGLVPFTLGSD 176
Query: 218 TDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFD 277
T+GSI P+S + G+KPT G SRAG P D +GP R+VAD V D + G D
Sbjct: 177 TNGSIRVPASLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDVLQGPD 236
Query: 278 HNDPA 282
DP
Sbjct: 237 PQDPF 241
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase. Allophanate
hydrolase catalyzes the second reaction in an
ATP-dependent two-step degradation of urea to ammonia
and C02, following the action of the biotin-containing
urea carboxylase. The yeast enzyme, a fusion of
allophanate hydrolase to urea carboxylase, is designated
urea amidolyase [Central intermediary metabolism,
Nitrogen metabolism].
Length = 561
Score = 132 bits (335), Expect = 3e-33
Identities = 96/267 (35%), Positives = 126/267 (47%), Gaps = 35/267 (13%)
Query: 85 DALSQADKADYERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAG--SYALLGSVVPRD 142
D L+QA A R P LP L+G+P +KDNI + TTA ++A D
Sbjct: 12 DLLAQA-AALDARD-ARPERLP-LYGVPFAVKDNIDVAG-LPTTAACPAFAYTPE---ED 64
Query: 143 AGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSAD--PWGSSSG 200
A VV LR AGAI++GK +L ++A G R G GSSSG
Sbjct: 65 ATVVALLRAAGAIVVGKTNLDQFAT-----GLVG--TRSPYGAVRNAFDPAYISGGSSSG 117
Query: 201 SAISVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPIC 260
SA++VA LV +LGT+T GS P++ N++VG+KPT GL S GV+P D V
Sbjct: 118 SAVAVARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLVSTTGVVPACRSLDCVSIFA 177
Query: 261 RTVADAVYVLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNP---FF 317
TVADA VL A D DP S+ +P ++F P R+GV R FF
Sbjct: 178 LTVADAEQVLRIAAAPDARDP----YSRPLPAAALRRFPPP-----PRVGVPRAAQLEFF 228
Query: 318 NILKGSPLAQ-VFDHHLQTLRQEGALV 343
G A+ F ++ L G V
Sbjct: 229 ----GDSQAEAAFAAAVERLEALGVEV 251
Score = 31.9 bits (73), Expect = 0.81
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 471 GINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATKIRKPPSFKS 520
+ VPAG+ S+G+PFG+ G + L + + A+ + + +S
Sbjct: 372 AVAVPAGFRSDGLPFGVTLIGPAFHDAALASLGRRLQAASALPLGATGES 421
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional.
Length = 600
Score = 131 bits (332), Expect = 1e-32
Identities = 108/321 (33%), Positives = 151/321 (47%), Gaps = 58/321 (18%)
Query: 43 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDA-----LSQADKADYER 97
T+ L+ A++ LT R +V L + V+ +AD
Sbjct: 8 TLASLRAAYRAGTLTPRAVVA----------ALYARIAAVDDPEVWIHLRPEADLLAQAA 57
Query: 98 KVKA--PGSLPGLHGIPILLKDNIATKD--KMNTTAG--SYALLGSVVPRDAGVVTKLRE 151
++A P +LP L+G+P +KDNI D + TTA ++A RDA VV +LR
Sbjct: 58 ALEARDPAALP-LYGVPFAVKDNI---DVAGLPTTAACPAFA---YTPERDATVVARLRA 110
Query: 152 AGAIILGKASLSEWAN----FRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAG 207
AGAI++GK +L ++A RS P G +N + GSSSGSA++VA
Sbjct: 111 AGAIVIGKTNLDQFATGLVGTRS---PYGAV------RNAFDPEYVSGGSSSGSAVAVAL 161
Query: 208 NLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAV 267
LV+ +LGT+T GS P++ N++VG+KPT+GL S GV+P D V TV DA
Sbjct: 162 GLVSFALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFALTVDDAD 221
Query: 268 YVLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRN---PFFNILKGSP 324
VL +AGFD DP S+ P P G R+GV R FF G
Sbjct: 222 AVLAVMAGFDPADP----YSRANPADA--PAALPAGP---RVGVPRAAQLEFF----GDA 268
Query: 325 LAQ-VFDHHLQTLRQEGALVI 344
A+ F L L GA ++
Sbjct: 269 EAEAAFAAALARLEALGAELV 289
Score = 29.0 bits (66), Expect = 7.1
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 471 GINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQAT 510
+ VPAG+ ++G+PFG+ + L ++A + A
Sbjct: 409 ALAVPAGFRADGLPFGVTLIAPAFADQALADLAARLQAAL 448
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family. Members of
this protein family are aminohydrolases related to, but
distinct from, glutamyl-tRNA(Gln) amidotransferase
subunit A. The best characterized member is the biuret
hydrolase of Pseudomonas sp. ADP, which hydrolyzes
ammonia from the three-nitrogen compound biuret to yield
allophanate. Allophanate is also an intermediate in urea
degradation by the urea carboxylase/allophanate
hydrolase pathway, an alternative to urease [Unknown
function, Enzymes of unknown specificity].
Length = 452
Score = 128 bits (323), Expect = 3e-32
Identities = 85/248 (34%), Positives = 130/248 (52%), Gaps = 16/248 (6%)
Query: 43 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKA 101
+I ++ A + ++++R + E L I++ + L+ V + AL+ A + D + A
Sbjct: 1 SIVEIAGAIRSGRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADL---A 57
Query: 102 PGS-LPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVP--RDAGVVTKLREAGAIILG 158
GS L L G+P +K N+ + T AG+ + + P RDA +V +L AGA+++G
Sbjct: 58 AGSPLGPLAGVPFAVK-NLFDVAGLTTLAGA-KINRDLAPAKRDATLVQRLSAAGAVLVG 115
Query: 159 KASLSEWA-NFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVSLGTE 217
++ E+A F + NA G +NP+ L+ GSS GSA +VA LV SLG++
Sbjct: 116 ALNMDEFAYGFTTENA------HYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSD 169
Query: 218 TDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFD 277
T+GSI P+S V G+KPT G SR GV P D VGP R+V D D + G D
Sbjct: 170 TNGSIRVPASLCGVFGLKPTYGRLSRQGVFPFVASLDHVGPFARSVEDLALAYDVMQGPD 229
Query: 278 HNDPATSA 285
DP +
Sbjct: 230 PQDPFCTD 237
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional.
Length = 452
Score = 127 bits (320), Expect = 8e-32
Identities = 100/316 (31%), Positives = 142/316 (44%), Gaps = 52/316 (16%)
Query: 42 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKA 101
+ L + + L Q+ E L I I + + + +A R +A
Sbjct: 6 KSAAQLAVLIQSGALDPVQVAEQALDAI-ASYADQAVFISLTEERAMREAEASSAR-WRA 63
Query: 102 PGSLPGLHGIPILLKD--NIATKDKMNTTAGSYALLGSVVP--RDAGVVTKLREAGAIIL 157
SL L GIPI KD ++A TTAGS +L + P RDA VV L AG + +
Sbjct: 64 GRSLGLLDGIPIAWKDLFDVA---GSVTTAGS-VVLANAAPASRDAAVVALLARAGMVSI 119
Query: 158 GKASLSEWANFRSSNAPNGFCARGGQGKNPYV------LSAD----PWGSSSGSAISVAG 207
G+ ++SE+A G G NP+ S D P GSSSGSA++VA
Sbjct: 120 GRTNMSEFA-------------FSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAVAVAA 166
Query: 208 NLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAV 267
LV V++GT+T GS+ P++ N +VG K T G S GV PL DS+GP+CR+V DAV
Sbjct: 167 GLVPVAMGTDTGGSVRIPAAFNGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSVRDAV 226
Query: 268 YVLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQ 327
++ A+ G P L G RL V F+ + +
Sbjct: 227 WIDAAMRGLTA--PDVVRRP----------------LAGLRLVVPETVVFDDAE-PGVRA 267
Query: 328 VFDHHLQTLRQEGALV 343
F+ ++ L+ GALV
Sbjct: 268 AFEAAVERLQAAGALV 283
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional.
Length = 469
Score = 125 bits (315), Expect = 5e-31
Identities = 84/254 (33%), Positives = 126/254 (49%), Gaps = 38/254 (14%)
Query: 46 DLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAPGS 104
+L A + +++R+ E L + +NP ++ V++ P+ AL+QAD D R A G
Sbjct: 12 ELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAAR---ARGD 68
Query: 105 LPG-LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLS 163
PG L G+P+ +K N+ TT G + P D+ VV LR+AGA+I+G+
Sbjct: 69 DPGPLAGVPVTVKVNVDQAGFA-TTNGVRLQKDLIAPADSPVVDNLRKAGAVIIGR---- 123
Query: 164 EWANFRSSNAPNGFCARG-------GQGKNPYVLSADPWGSSSGSAISVAGNLVAVSLGT 216
+N P F R G+ NP+ S P GSS G+A +VA + A++ GT
Sbjct: 124 -------TNTP-AFSYRWFTDNPLHGRTLNPWDPSLTPGGSSGGAAAAVAAGIGAIAHGT 175
Query: 217 ETDGSILSPSSSNSVVGIKPTVG--------LTSRAGVIPLTPRQDSV-GPICRTVADAV 267
+ GSI P+ + V G++PT+G R P+ + SV GP+ RTVAD
Sbjct: 176 DIGGSIRYPAYACGVHGLRPTLGRVPAYNASSPER----PIGAQLMSVQGPLARTVADLR 231
Query: 268 YVLDAIAGFDHNDP 281
L A+A D DP
Sbjct: 232 LALAAMAAPDPRDP 245
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated.
Length = 566
Score = 123 bits (311), Expect = 3e-30
Identities = 100/302 (33%), Positives = 140/302 (46%), Gaps = 40/302 (13%)
Query: 37 FPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLN-----PLLHGVIEVNPDALSQAD 91
+ E +I +L+ A + + T+ +LV+ YL I + L+ V+ NPDAL +A+
Sbjct: 2 IEVTEVSIAELRAALESGRTTAVELVKAYLARIDAYDGPATGTALNAVVVRNPDALKEAE 61
Query: 92 KADYERKVKAPGSLPG-LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLR 150
+D R A G G L GIP KD+ K + +GS A V RDA + +LR
Sbjct: 62 ASDARR---ARGETLGPLDGIPYTAKDSYLVKG-LTAASGSPAFKDLVAQRDAFTIERLR 117
Query: 151 EAGAIILGKASLSEWANFRSSNAPNGFCARG--GQGKNPY----VLSADPWGSSSGSAIS 204
AGAI LGK ++ AN G RG G+ ++PY + + GSS+G+ +
Sbjct: 118 AAGAICLGKTNMPPMAN--------GGMQRGVYGRAESPYNAAYLTAPFASGSSNGAGTA 169
Query: 205 VAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVA 264
A + A L ET S P+S+N + P+ G+ S G PLTP D V P RT+A
Sbjct: 170 TAASFSAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTMA 229
Query: 265 DAVYVLDAIAGFDHNDPATS-------------AASKYIPHGGYKQFIKPHGLKGKRLGV 311
D + VLD I +DP T AS+ P LKGKR GV
Sbjct: 230 DLLEVLDVIVA---DDPDTRGDLWRLQPWVPIPKASEVRPASYLALAAGADALKGKRFGV 286
Query: 312 VR 313
R
Sbjct: 287 PR 288
Score = 30.1 bits (68), Expect = 3.2
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 468 GFPGINVPAGYDSE-GVPFGICFGGLKGTEPKLIEIAYGFEQATKIRKPP 516
G P + VP G ++ G+P G+ F G + L+ A FE R P
Sbjct: 511 GVPTVTVPMGVMADIGMPVGLTFAGRAYDDNALLRFAAAFEATGSRRMVP 560
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 118 bits (299), Expect = 8e-29
Identities = 83/284 (29%), Positives = 136/284 (47%), Gaps = 32/284 (11%)
Query: 38 PIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNP--DALSQADKADY 95
PI + L A ++ +++ +++ YL I R+NP ++ ++ + L++A + D
Sbjct: 8 PIVRLSAHALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLAEAAEKD- 66
Query: 96 ERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAI 155
+ LHG+P KD TK + TT GS V DA VV ++R AGAI
Sbjct: 67 -AALARGEYRGWLHGMPQAPKDLAPTKG-IRTTLGSPIFADQVPQEDAIVVERMRAAGAI 124
Query: 156 ILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVSLG 215
+GK + E+ S+ N G +NPY S GSS G+A ++A ++ V+ G
Sbjct: 125 FIGKTNTPEFG--LGSHTYNPVY---GATRNPYDPSRSAGGSSGGAAAALALRMLPVADG 179
Query: 216 TETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQD-------SVGPICRTVADAVY 268
++ GS+ +P++ N+V G +P+ G +P P D + GP+ RTV D
Sbjct: 180 SDMMGSLRNPAAFNNVYGFRPSQGR------VPHGPGGDVFVQQLGTEGPMGRTVEDVAL 233
Query: 269 VLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHG--LKGKRLG 310
+L AG+D DP + A +F +P L+GKR+
Sbjct: 234 LLAVQAGYDPRDPLSLAEDP-------ARFAQPLEADLRGKRIA 270
Score = 40.0 bits (94), Expect = 0.002
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 467 GGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATKI--RKPP 516
G P I+VP G+++ G+P G+ G + ++++A+ +EQAT R+PP
Sbjct: 428 AGLPAISVPVGFNAAGLPMGMQIIGPPRADLAVLQLAHAYEQATDWVQRRPP 479
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated.
Length = 424
Score = 117 bits (295), Expect = 1e-28
Identities = 98/312 (31%), Positives = 150/312 (48%), Gaps = 40/312 (12%)
Query: 86 ALSQADKADYERKVKAPGSLPGLHGIPILLKD--NIATKDKMNTTAGSYALLGSVVP--R 141
A ++AD AD R+ SL L G + +KD ++A + T AGS + P
Sbjct: 26 ARAEADAADARRRAGR--SLGPLDGRIVSIKDLFDVAGEP---TLAGS-VIRRDAPPAGA 79
Query: 142 DAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGS 201
DA +V +LR AGA+I+GK ++E+A F P G G+ N + P GSSSG+
Sbjct: 80 DALIVQRLRNAGAVIIGKTHMTEFA-F----TPVGLNPHYGEPGNAIDPARIPGGSSSGA 134
Query: 202 AISVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICR 261
A+SVA +++G++T GS+ P++ N +VG KPT G PL+P DS+GP+ R
Sbjct: 135 AVSVAEGTSEIAIGSDTGGSVRIPAALNGLVGFKPTARRIPLEGAFPLSPSLDSIGPLAR 194
Query: 262 TVADAVYVLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILK 321
TVAD DA+ A K IP ++ + G R+G+ + ++
Sbjct: 195 TVADCA-AADAVM----------AGEKPIP-------LEVLPVAGLRIGLPKGYLLADME 236
Query: 322 GSPLAQVFDHHLQTLRQEGA----LVIDHL--EIANVNSKNSISNDETIAMLAEFKLALN 375
+A F+ L L + GA L ID L +A SI+ E + A++ L+
Sbjct: 237 P-DVAAAFEASLAALEKAGARIADLAIDDLIARLAEATRIGSIAGIEASHIHADWLADLD 295
Query: 376 AYLKELVTSPVR 387
A + V P+
Sbjct: 296 ANVDIRVKRPLS 307
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional.
Length = 490
Score = 118 bits (298), Expect = 1e-28
Identities = 80/261 (30%), Positives = 123/261 (47%), Gaps = 29/261 (11%)
Query: 31 SNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQ 89
+A A +L A +++S +L + + I R + ++ ++ + D A +
Sbjct: 1 MSAKAADEWSFLPATELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAA 60
Query: 90 ADKADYERKVKAPGSLPGLHGIPILLKD--NIATKDKMNTTAGSYALLGSVVPRDAGVVT 147
A AD R A G L GIP+ +K+ N+A + TT G L V DA V
Sbjct: 61 ARAADAAR---ARGERGPLLGIPVTVKESFNVA---GLPTTWGFPDLRDYVPAEDAVAVA 114
Query: 148 KLREAGAIILGKAS----LSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAI 203
+L+ AGA+ILGK + L +W +S N G NP+ L+ P GSS GSA
Sbjct: 115 RLKAAGAVILGKTNVPLGLQDW---QSYNEIYG------TTNNPWDLARTPGGSSGGSAA 165
Query: 204 SVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAG-VIPLTP----RQD--SV 256
++A A+S+G++ GS+ P+ V KPT+GL G + P P + D
Sbjct: 166 ALAAGFGALSIGSDIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVA 225
Query: 257 GPICRTVADAVYVLDAIAGFD 277
GP+ R+ D +LD +AG D
Sbjct: 226 GPMARSARDLALLLDVMAGPD 246
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional.
Length = 502
Score = 117 bits (296), Expect = 2e-28
Identities = 80/227 (35%), Positives = 107/227 (47%), Gaps = 23/227 (10%)
Query: 97 RKVKAPGSLPG-LHGIPILLKDNIATKD--KMNTTAGSYALLGSVVPRDAGVVTKLREAG 153
K G+ G L G + LKDN+A MN GS L G V DA VVT+L +AG
Sbjct: 76 VKTSIKGAAEGKLAGKTVALKDNVAVAGVPMMN---GSSTLEGFVPSFDATVVTRLLDAG 132
Query: 154 AIILGKASLSEW----ANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNL 209
A I+GKA+ + + S P NP GSSSGSA VA
Sbjct: 133 ATIVGKATCEDLCFSGGSHTSDPGPV---------HNPRDPGYSAGGSSSGSAALVAAGE 183
Query: 210 VAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYV 269
V +++G + GSI PS+ + G+KPT GL G P+ D +GP+ TV D +
Sbjct: 184 VDMAIGGDQGGSIRIPSAWCGIYGMKPTHGLVPYTGAFPIERTIDHLGPMTATVRDNALL 243
Query: 270 LDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPF 316
L+ IAG D DP A P Y + G+KG ++G++R F
Sbjct: 244 LEVIAGRDGLDPRQPAQ---PPVDDYTAALD-RGVKGLKIGILREGF 286
Score = 33.4 bits (77), Expect = 0.32
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 466 VGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATK 511
V G P ++VP G +G+P G+ G E ++ A FE +
Sbjct: 458 VTGHPAMSVPCGL-VDGLPVGLMLVGRHFDEATILRAAAAFEASGD 502
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional.
Length = 462
Score = 115 bits (289), Expect = 1e-27
Identities = 75/219 (34%), Positives = 108/219 (49%), Gaps = 11/219 (5%)
Query: 56 LTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAPGSLPGLHGIPIL 114
LT+ L+E YL I RL+ L V D A ++A+ A +++ A LP L G+PI
Sbjct: 23 LTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQ--QRLDAGERLP-LLGVPIA 79
Query: 115 LKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAP 174
+KD++ ++ T + G DA VV +LR AGA+I+GK ++ E P
Sbjct: 80 IKDDVDVAGEVTTYGSAGH--GPAATSDAEVVRRLRAAGAVIIGKTNVPELMIM-----P 132
Query: 175 NGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVSLGTETDGSILSPSSSNSVVGI 234
G +NP+ + P GSS GSA +VA L V+LG++ GSI PS+ + G+
Sbjct: 133 FTESLAFGATRNPWDPNRTPGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPSTWCGLFGL 192
Query: 235 KPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAI 273
KP S GPI R+V DA +LDA
Sbjct: 193 KPQRDRISLEPHDGAWQGLSVNGPIARSVMDAALLLDAT 231
Score = 31.8 bits (72), Expect = 0.84
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 453 LVTPRSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQATK- 511
LV R + + G P VP +D +G+P + G E L+ +A E A
Sbjct: 395 LVVQRVPYFQVWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEATLLALAAQIESARPW 454
Query: 512 -IRKPP 516
R+PP
Sbjct: 455 AHRRPP 460
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional.
Length = 466
Score = 113 bits (286), Expect = 4e-27
Identities = 93/315 (29%), Positives = 138/315 (43%), Gaps = 49/315 (15%)
Query: 56 LTSRQLVEFY--------------LGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVK 100
LT+ +L+ Y L I R +P ++ V+ + AL+ A +A ER +
Sbjct: 7 LTAVELLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAA-RASEERWRR 65
Query: 101 -APGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVV-PRDAGVVTKLREAGAIILG 158
P L L G+P+ +KD T+ T GS A+ DA V +LREAGA++LG
Sbjct: 66 GEPCGL--LDGVPVSIKDIFLTRG-WPTLRGSRAIDADGPWDVDAPAVARLREAGAVLLG 122
Query: 159 KASLSE--WANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVSLGT 216
K + E W S G +NP+ GSS G+A +VA + +S+GT
Sbjct: 123 KTTTPEFGWKGVTDS-------PLYGITRNPWDTRLTAGGSSGGAAAAVALGMGPLSVGT 175
Query: 217 ETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDS-----VGPICRTVADAVYVLD 271
+ GS+ P+S G KPT G +PL P VGP+ RTVADA +LD
Sbjct: 176 DGGGSVRIPASFCGTFGFKPTFGR------VPLYPASPFGTLAHVGPMTRTVADAALLLD 229
Query: 272 AIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSP-LAQVFD 330
IA D D + P + + ++G L + +P + P +A +
Sbjct: 230 VIARPDARDWSALPP----PTTSFLDAL-DRDVRG--LRIAYSPTLGYVDVDPEVAALVA 282
Query: 331 HHLQTLRQEGALVID 345
+Q L GA V +
Sbjct: 283 QAVQRLAALGARVEE 297
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional.
Length = 483
Score = 113 bits (284), Expect = 7e-27
Identities = 84/269 (31%), Positives = 128/269 (47%), Gaps = 30/269 (11%)
Query: 36 AFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKAD 94
+ R + D +TS +LV L I P L+ V + AL++A +AD
Sbjct: 12 SGNDRLPGLTDQAYQLASGAVTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEAD 71
Query: 95 YERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVP--RDAGVVTKLREA 152
R+ A LP L G+PI +KD++ + ++ G V P D+ VV +LR A
Sbjct: 72 --RRRAAGDRLP-LLGVPIAVKDDV----DVAGVPTAFGTAGEVPPATADSEVVRRLRAA 124
Query: 153 GAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAV 212
GA+I+GK + E + ++ P F G +NP+ P GSS GSA +VA LV
Sbjct: 125 GAVIVGKTNTCELGQWPFTSGP-AF----GHTRNPWSRDHTPGGSSGGSAAAVAAGLVTA 179
Query: 213 SLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSV------GPICRTVADA 266
++G++ GS+ P++ +VGIKP + G I P ++ GP+ RTVADA
Sbjct: 180 AIGSDGAGSVRIPAAWTHLVGIKP------QRGRISTWPLPEAFNGLTVNGPLARTVADA 233
Query: 267 VYVLDAIAG---FDHNDPATSAASKYIPH 292
+LDA +G D + P S +
Sbjct: 234 ALLLDAASGNHPGDRHRPPPVTVSDAVGR 262
Score = 41.6 bits (98), Expect = 8e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 466 VGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIA 503
V G+P INVPAG+ S+G+P G G +EP LI +A
Sbjct: 424 VLGWPSINVPAGFTSDGLPIGAQLMGPANSEPLLISLA 461
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional.
Length = 464
Score = 100 bits (251), Expect = 1e-22
Identities = 81/306 (26%), Positives = 139/306 (45%), Gaps = 25/306 (8%)
Query: 43 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAP 102
+ +L ++ L+ ++ E L I R P L+ + +P+A A +A R K
Sbjct: 8 SAVELLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGE 67
Query: 103 GSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASL 162
P L G+P+ +K+NIAT+ + G+ A DA +LREAGA+IL K ++
Sbjct: 68 PLGP-LDGVPVTIKENIATRG-VPVPLGTAATDLPPAAADAPPAARLREAGAVILAKTTM 125
Query: 163 SEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVSLGTETDGSI 222
++ S G + G +NP+ L +P GSS+G+ + A + LGT+ GS+
Sbjct: 126 PDYGMLSS-----GLSSFHGLTRNPWDLDQNPGGSSAGAGAAAAAGYGPLHLGTDIGGSV 180
Query: 223 LSPSSSNSVVGIKPTVGLTSRAGVIPLTP----RQDSVGPICRTVADAVYVLDAIAGFDH 278
P+ +VG+KP++G IP+ P R GP+ RTV DA ++ ++ D
Sbjct: 181 RLPAGWCGIVGLKPSLGR------IPIDPPYTGR--CAGPMTRTVDDAALLMSVLSRPDA 232
Query: 279 NDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQ 338
D TS +P ++G R+G++ + + + + +
Sbjct: 233 RD-GTS-----LPPQDIDWSDLDIDVRGLRIGLMLDAGCGLAVDPEVRAAVEAAARRFEA 286
Query: 339 EGALVI 344
GA+V
Sbjct: 287 AGAIVE 292
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 83.1 bits (206), Expect = 5e-17
Identities = 56/219 (25%), Positives = 87/219 (39%), Gaps = 35/219 (15%)
Query: 56 LTSRQLVEFYLGEIHRLNPLLHGVI-EVNPDALSQADKADYERKVKAPGSLPG-LHGIPI 113
+++ ++VE + +NP L+ + A +A PGS G G+P
Sbjct: 29 VSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRA---------ARPGSQGGFFSGVPT 79
Query: 114 LLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNA 173
+KDN+ + T GS A D+ + G I LGK L E+
Sbjct: 80 FIKDNVDVAG-LPTMHGSDAWTPRPAKADSDFARQFLATGLISLGKTQLPEF-------- 130
Query: 174 PNGFCA-----RGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVSLGTETDGSILSPSSS 228
GF A R G +NP+ SS GSA VA +V ++ + GSI P++
Sbjct: 131 --GFSASTEHPRLGPVRNPWNTDYSAGASSGGSAALVAAGVVPIAHANDGGGSIRIPAAC 188
Query: 229 NSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAV 267
+VG+KP+ G + P+ VA+ V
Sbjct: 189 CGLVGLKPSRGRL-------PLDPELRRLPV-NIVANGV 219
Score = 43.0 bits (102), Expect = 3e-04
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 466 VGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQA 509
G P I++P G S+G+P G+ F G E L+E+AY E+A
Sbjct: 418 ATGEPAISLPLGQSSDGLPVGMMFSADVGDEATLLELAYELEEA 461
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional.
Length = 395
Score = 81.6 bits (202), Expect = 1e-16
Identities = 59/144 (40%), Positives = 74/144 (51%), Gaps = 6/144 (4%)
Query: 141 RDAGVVTKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSG 200
R A V KL AGA +GK E A S N N A G NP P GSSSG
Sbjct: 60 RTAPAVEKLLAAGARFVGKTQTDELA--FSLNGQN---AHYGTPVNPAAPDRVPGGSSSG 114
Query: 201 SAISVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPIC 260
SA +VAG L +LGT+T GS+ +P+S + G++PT G S GV+PL P D+VG
Sbjct: 115 SAAAVAGGLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLEGVMPLAPSFDTVGWFA 174
Query: 261 RTVADAVYVLDAIAGFD-HNDPAT 283
R +A V + + G D P T
Sbjct: 175 RDIALLERVGEVLLGDDAQEFPLT 198
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase.
Length = 422
Score = 79.5 bits (196), Expect = 6e-16
Identities = 60/171 (35%), Positives = 81/171 (47%), Gaps = 11/171 (6%)
Query: 96 ERKVKAPGSL---PGLHGIPILLKDNIATKDKMNTTAGS--YALLGSVVPRDAGVVTKLR 150
E+ V +P S LHG+ +KD I + T G+ +A S A V +
Sbjct: 12 EKFVLSPTSSSHDLPLHGLTFAVKD-IFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVL 70
Query: 151 EAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLV 210
GA +GK + E A + NG A G NP P GSSSGSA++V LV
Sbjct: 71 RGGATCVGKTIMDEMAY-----SINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVGAKLV 125
Query: 211 AVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICR 261
SLGT+T GS+ P+S + G +P+ G S GVIP+ D+VG R
Sbjct: 126 DFSLGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGVIPMAQSFDTVGWFAR 176
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional.
Length = 439
Score = 75.1 bits (185), Expect = 2e-14
Identities = 56/174 (32%), Positives = 76/174 (43%), Gaps = 23/174 (13%)
Query: 115 LKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAP 174
+KDN AT + T A S +L +A VV KL AGA + K E
Sbjct: 44 IKDNFATSEGP-THASSKSLENFKPSYNATVVQKLINAGAKPVAKVHCDELG-------- 94
Query: 175 NGFCARGGQG--------KNPYVLSADPWGSSSGSAISVAGNLVAVSLGTETDGSILSPS 226
GG G KNP S GSSSGSA + N ++ ++G++T S+ P+
Sbjct: 95 -----LGGTGLFSAFGLIKNPLDSSKLVGGSSSGSAATFNKN-ISFAIGSDTGDSVRLPA 148
Query: 227 SSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDHND 280
S VG KP+ G SR G+ D+V V DA+ + + G D ND
Sbjct: 149 SFIGKVGFKPSYGAISRYGLFAYASSLDTVAYFTHNVNDAIILSKVLFGKDEND 202
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 74.1 bits (182), Expect = 4e-14
Identities = 61/205 (29%), Positives = 100/205 (48%), Gaps = 24/205 (11%)
Query: 50 AFKQNKLTSRQLVEFYLGEIHRLNPLLHGVI-EVNPDALSQADKADYERKVKAPGSLPGL 108
A +Q ++T +LV + + +LNP L+ ++ E +AL +A + D+ K A
Sbjct: 12 AVQQGQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQRDFSGKPFA------- 64
Query: 109 HGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASLSEWA-- 166
G+PI LKD +T+GS + V +L + G IILG+++ E+
Sbjct: 65 -GVPIFLKDLGQELKGQLSTSGSRLFKNYQATKTDLYVKRLEDLGFIILGRSNTPEFGFK 123
Query: 167 NFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVSLGTETDGSILSPS 226
N S+ G P+ S + GSS G+A V+ +VA++ ++ GSI P+
Sbjct: 124 NISDSSL-------HGPVNLPFDNSRNAGGSSGGAAALVSSGIVALAAASDGGGSIRIPA 176
Query: 227 SSNSVVGIKPTVGLTSRAGVIPLTP 251
S N ++G+KP SR G IP+ P
Sbjct: 177 SFNGLIGLKP-----SR-GRIPVGP 195
Score = 34.0 bits (78), Expect = 0.17
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 468 GFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQA 509
G P I++P EG+P G+ KG E L+ IA FE A
Sbjct: 436 GQPAISLPTYETKEGLPMGVQLIAAKGREDLLLGIAEQFEAA 477
>gnl|CDD|235024 PRK02287, PRK02287, hypothetical protein; Provisional.
Length = 171
Score = 30.6 bits (70), Expect = 1.2
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 55 KLTSRQLVEFYLGEIHR-LNPLLHGVIEVNP---DALSQADKADYERK 98
K T+R+LV F L + R + + G I +NP ALS AD+ E++
Sbjct: 16 KCTARKLVRFGLARLVRSIRKIPRGSIVLNPFAEKALSPADRDIVEKR 63
>gnl|CDD|223924 COG0855, Ppk, Polyphosphate kinase [Inorganic ion transport and
metabolism].
Length = 696
Score = 31.5 bits (72), Expect = 1.4
Identities = 43/158 (27%), Positives = 62/158 (39%), Gaps = 35/158 (22%)
Query: 17 SHLLLPTL--LAISAQSNAIHAFPIREATIKDLQLAFKQNK-----LTSRQLVEFYLGEI 69
S+ LL L LAI + SN F +R A +K Q+ + LT R+ + +
Sbjct: 33 SNPLLERLRFLAIFS-SNLDEFFMVRVAGLKR-QIEAGIEQRSPDGLTPREQLGRIQERV 90
Query: 70 HRLN------------PLL--HGVIEVNPDALSQADKA-------DYERKVKAPGSLPGL 108
+L PLL G+ VN LS+A K + V P +L
Sbjct: 91 LKLVQEQDRLFNELLLPLLAKEGIFIVNYRELSEAQKKWLRTYFKEQIFPVLTPLALDPA 150
Query: 109 HGIPILLKD--NIATK-DKMNTTAGSYALLG--SVVPR 141
H P L N+A + + YAL+ SV+PR
Sbjct: 151 HPFPFLSNLSLNLAVEIRGKDAFGEHYALVKIPSVLPR 188
>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the
Holliday junction resolvase [DNA replication,
recombination, and repair].
Length = 436
Score = 31.1 bits (71), Expect = 1.7
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 42 ATIKDLQLAF---KQNKLTSRQLVEFYLGEIHRLN 73
+ +KDL+ ++N+L R+ + F L EIHR N
Sbjct: 84 SGVKDLREIIEEARKNRLLGRRTILF-LDEIHRFN 117
>gnl|CDD|233458 TIGR01540, portal_PBSX, phage portal protein, PBSX family. This
model represents one of several distantly related
families of phage portal protein. This protein forms a
hole, or portal, that enables DNA passage during
packaging and ejection. It also forms the junction
between the phage head (capsid) and the tail proteins.
It functions as a dodecamer of a single polypeptide of
average mol. wt. of 40-90 KDa. This family shows clear
homology to TIGR01537. The alignment for this group was
trimmed of poorly alignable N-terminal sequence of about
50 residues and of C-terminal regions present in some
but not all members of up 180 residues [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 320
Score = 30.6 bits (69), Expect = 2.1
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 38 PIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKAD--Y 95
P+ E KD + F + K SR L HRL PL G+ N A+KA Y
Sbjct: 241 PLAETLQKDAE--FLEYKNKSRN----DLRAAHRLPPLYTGITPANEGGRGDAEKARRVY 294
Query: 96 ERKVKAP 102
E +V P
Sbjct: 295 EEQVVMP 301
>gnl|CDD|225410 COG2854, Ttg2D, ABC-type transport system involved in resistance
to organic solvents, auxiliary component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 202
Score = 29.7 bits (67), Expect = 2.7
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 4 LKMATAILAFSLFSHLLLPTLLAISAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVE 63
+A ++AF+ P Q A + +K+ Q KQ+ RQ+V+
Sbjct: 8 TILALLVIAFASSLAAAAPANPYSLVQEAADKVL----SILKNNQAKIKQDPQYLRQIVD 63
Query: 64 FYLGEI 69
L
Sbjct: 64 QELLPY 69
>gnl|CDD|219865 pfam08493, AflR, Aflatoxin regulatory protein. This domain is
found in the aflatoxin regulatory protein (AflR) which
is involved in the regulation of the biosynthesis of
aflatoxin in the fungal genus Aspergillus. It occurs
together with the fungal Zn(2)-Cys(6) binuclear cluster
domain (pfam00172).
Length = 275
Score = 29.5 bits (66), Expect = 3.4
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 166 ANFRSSNAPNGFCARGGQGKN-PYVLSADPWGSSSGSAISVAGNLVAVSLGTETDGSILS 224
AN SS+ P G P P G+SS S + A E GSILS
Sbjct: 19 ANTTSSSHPQPPVQSGPSSIQPPVATPHTPNGTSSPSPKFSHQSPPAE---PELWGSILS 75
Query: 225 PSSSNSVVG 233
P++SN G
Sbjct: 76 PNASNQDQG 84
>gnl|CDD|233896 TIGR02495, NrdG2, anaerobic ribonucleoside-triphosphate reductase
activating protein. This enzyme is a member of the
radical-SAM family (pfam04055). It is often gene
clustered with the class III (anaerobic) ribonucleotide
triphosphate reductase (NrdD, TIGR02487) and presumably
fulfills the identical function as NrdG which utilizes
S-adenosyl methionine, an iron-sulfur cluster and a
reductant (dihydroflavodoxin) to produce a
glycine-centered radical in NrdD [Purines, pyrimidines,
nucleosides, and nucleotides, 2'-Deoxyribonucleotide
metabolism, Protein fate, Protein modification and
repair].
Length = 192
Score = 29.3 bits (66), Expect = 3.5
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 62 VEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAPGSLPGLH 109
VE L + R LL GV+ + QA D+ R+V+ G L
Sbjct: 49 VEELLEFLRRRRGLLDGVVITGGEPTLQAGLPDFLREVRELGFEVKLD 96
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional.
Length = 445
Score = 29.4 bits (66), Expect = 4.9
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 132 YALLGSVVPRDAGVVTKLREAGAIILGKASLSEWANFRSSNAP 174
YA L + P + L+ AG+ L A LS WA+F +++AP
Sbjct: 63 YAELSTAYPENGADYVYLKNAGSRPL--AFLSGWASFWANDAP 103
>gnl|CDD|214497 smart00062, PBPb, Bacterial periplasmic substrate-binding proteins.
bacterial proteins, eukaryotic ones are in PBPe.
Length = 219
Score = 28.8 bits (65), Expect = 5.3
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 24/102 (23%)
Query: 304 LKGKRLGVVRN--PFFNILKGSPLAQV--FDHHLQTLR--QEG---ALVIDHLEIANVNS 354
LKGK++ VV + K P A++ +D + + L + G A V D +A +
Sbjct: 104 LKGKKVAVVAGTTAEELLKKLYPEAKIVSYDSNAEALAALKAGRADAAVADAPLLAALVK 163
Query: 355 KNS----------ISNDETIAML-----AEFKLALNAYLKEL 381
++ + E A+ E +N LKEL
Sbjct: 164 QHGLPELKIVPDPLDTPEGYAIAVRKGDPELLDKINKALKEL 205
>gnl|CDD|147207 pfam04924, Pox_A6, Poxvirus A6 protein.
Length = 371
Score = 28.4 bits (64), Expect = 8.9
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 389 LAEVIA-FNNKF-SDLEKIKEYGQDLLLSAE-ATDGIG 423
L ++IA F++ +D EK++EY + +S E GI
Sbjct: 180 LLKIIAVFDSDLVTDKEKLEEYREIFSISTESVIHGIR 217
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.385
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,503,988
Number of extensions: 2642363
Number of successful extensions: 2379
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2281
Number of HSP's successfully gapped: 70
Length of query: 520
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 419
Effective length of database: 6,457,848
Effective search space: 2705838312
Effective search space used: 2705838312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.3 bits)