RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 009991
(520 letters)
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 248 bits (635), Expect = 4e-77
Identities = 132/504 (26%), Positives = 220/504 (43%), Gaps = 54/504 (10%)
Query: 39 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYER 97
IR ++++L K K+ +V+ I +P + + ++ + A+ +A + D +
Sbjct: 3 IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQ 62
Query: 98 KVKAPGSLPG-LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAII 156
A + G L GIP+ +KDNI T + TT S L G V ++ V+ KL + A++
Sbjct: 63 ---AKDQMDGKLFGIPMGIKDNIITNG-LETTCASKMLEGFVPIYESTVMEKLHKENAVL 118
Query: 157 LGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVSLGT 216
+GK ++ E+A S+ NP+ A P GSS GSA +VA LV +SLG+
Sbjct: 119 IGKLNMDEFAMGGSTETSYFKKTV-----NPFDHKAVPGGSSGGSAAAVAAGLVPLSLGS 173
Query: 217 ETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGF 276
+T GSI P++ VVG+KPT G SR G++ D +GP+ R V D VL+AI+G
Sbjct: 174 DTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGA 233
Query: 277 DHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTL 336
D ND ++ + + I +KG ++ + + + + + + ++TL
Sbjct: 234 DVNDSTSAP----VDDVDFTSEIGK-DIKGLKVALPKEYLGEGV-ADDVKEAVQNAVETL 287
Query: 337 RQEGALVIDHLEIANVNSKNSISNDETIAMLAEFKLALNAYL---KELVTSPVRSLAEVI 393
+ GA+V E++ N+K I + IA +E L+ + + SL E+
Sbjct: 288 KSLGAVVE---EVSLPNTKFGIPSYYVIAS-SEASSNLSRFDGIRYGYHSKEAHSLEELY 343
Query: 394 AFNNK--FSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLD 451
+ F K + + LS+ D K + ++ FE D
Sbjct: 344 KMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFEN------YD 397
Query: 452 ALVTP---------------------RSYASTLLAVGGFPGINVPAGYDSEGVPFGICFG 490
+V P +T + + G PGI+VP G S G P G+ F
Sbjct: 398 VVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQ-SNGRPIGLQFI 456
Query: 491 GLKGTEPKLIEIAYGFEQATKIRK 514
G E L +AY +E +
Sbjct: 457 GKPFDEKTLYRVAYQYETQYNLHD 480
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 231 bits (588), Expect = 2e-70
Identities = 206/505 (40%), Positives = 289/505 (57%), Gaps = 37/505 (7%)
Query: 37 FPIREATIKDLQLAFKQNKLTSRQLVEFYLGEI---HRLNPLLHGVIEVNPDALSQADKA 93
FP E + DLQ +L S L + YL I R P L VIE+NPDAL +A +
Sbjct: 2 FPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAER 61
Query: 94 DYERKVKAPGSLPG-LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREA 152
D ER G L G LHGIP+LLKDNI M T+AGS AL P DA +V +LR+A
Sbjct: 62 DRER---RDGRLRGPLHGIPLLLKDNINAAP-MATSAGSLAL-QGFRPDDAYLVRRLRDA 116
Query: 153 GAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAV 212
GA++LGK +LSEWANFR +++ +G+ ARGGQ +NPY +S P GSSSGSA++VA NL +V
Sbjct: 117 GAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASV 176
Query: 213 SLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDA 272
++GTETDGSI+ P++ N VVG+KPTVGL SR G+IP++ QD+ GP+ R+VADA VL A
Sbjct: 177 AIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTA 236
Query: 273 IAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHH 332
IAG D DP +A Y + P GL+GKR+G+++ P PL +
Sbjct: 237 IAGRDDADP-ATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQAATE 295
Query: 333 LQTLRQEGALVIDHLEIANVNSKNSISNDETIAMLAEFKLALNAYLKELVTSPVRSLAEV 392
L+ + + ++ + + E +L EFK L Y +P+RSLA++
Sbjct: 296 LRRAGA-------VVVPVELPNQGAWAEAERTLLLYEFKAGLERYFNTH-RAPLRSLADL 347
Query: 393 IAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFT--RDGFEKLMSTNNL 450
IAFN S +++ +GQ+LL+ A+AT G+ + R +G + ++ + L
Sbjct: 348 IAFNQAHSK-QELGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQL 406
Query: 451 DALVTP---------------RSYASTLLAVGGFPGINVPAGYDSEGVPFGICFGGLKGT 495
DALV P + + AV G+P + VP G +G+P G+ F G +
Sbjct: 407 DALVAPTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMGQ-IDGLPVGLLFMGTAWS 465
Query: 496 EPKLIEIAYGFEQATKIRKPPSFKS 520
EPKLIE+AY +EQ T+ R+PP F +
Sbjct: 466 EPKLIEMAYAYEQRTRARRPPHFDT 490
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 226 bits (577), Expect = 8e-69
Identities = 125/500 (25%), Positives = 205/500 (41%), Gaps = 57/500 (11%)
Query: 39 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERK 98
R+ TI++ K ++ +L + L I RL+P + I V + +
Sbjct: 6 FRKLTIEEC---LKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKKGK----- 57
Query: 99 VKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILG 158
GIP+ +KDNI T M TT S L DA VV K++EAG +++G
Sbjct: 58 ---------FWGIPVAIKDNILTLG-MRTTCASRILENYESVFDATVVKKMKEAGFVVVG 107
Query: 159 KASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVSLGTET 218
KA+L E+A S+ F R P GSS GSA +V+ +V +LG++T
Sbjct: 108 KANLDEFAMGSSTERSAFFPTRNPWDLERV-----PGGSSGGSAAAVSAGMVVAALGSDT 162
Query: 219 DGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDH 278
GS+ P+S VVG KPT GL SR G++ D +GPI +TV DA +++ I+G D
Sbjct: 163 GGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDE 222
Query: 279 NDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQ 338
ND + G+ G + V + + + +++ F+ L+ L +
Sbjct: 223 NDA------TTVNRKVDFLSEIEEGVSGMKFAVPEEIYEHDI-EEGVSERFEEALKLLER 275
Query: 339 EGALVIDHLEIANVNSKNSISNDETIAMLAEFKLALNAYLKELVTSPVRSLAEVIAFNNK 398
GA V + + K S++ IA AE L + + V +R + +
Sbjct: 276 LGAKVE---RVKIPHIKYSVATYYVIAP-AEASSNLARF--DGVKYGLRIKEKGLREMYM 329
Query: 399 FSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTP-- 456
+ E + ++ T E ++ + E + DA++TP
Sbjct: 330 KTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTS 389
Query: 457 -----------------RSYASTLLA-VGGFPGINVPAGYDSEGVPFGICFGGLKGTEPK 498
T+ A + G P I+VP G+ S +P G+ G + + K
Sbjct: 390 PVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGF-SNNLPVGVQVIGRRFADGK 448
Query: 499 LIEIAYGFEQATKIRKPPSF 518
+ IA E+ + + F
Sbjct: 449 VFRIARAIEKNSPYNENGMF 468
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 170 bits (430), Expect = 3e-47
Identities = 84/532 (15%), Positives = 158/532 (29%), Gaps = 71/532 (13%)
Query: 27 ISAQSNAIHAFPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDA 86
Q+ + + + + L + +L+ + YLG+ +N + V D
Sbjct: 26 FRLQNPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDC 85
Query: 87 LSQADKADYERKVKAPGSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVV 146
+Q +A + L+G+P+ LK+ + K ++T G G D VV
Sbjct: 86 ETQLSQAPRQGL---------LYGVPVSLKECFSYKG-HDSTLGLSLNEGMPSESDCVVV 135
Query: 147 TKLREAGAIILGKASLSEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVA 206
L+ GA+ ++ + + P NP+ S P GSS G +
Sbjct: 136 QVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTM-----NPWKSSKSPGGSSGGEGALIG 190
Query: 207 GNLVAVSLGTETDGSILSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSV----GPICRT 262
+ LGT+ GSI PS+ + G+KPT S++G+ Q +V GP+ R
Sbjct: 191 SGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARD 250
Query: 263 VADAVYVLDAIAGFDHNDPATSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKG 322
V L A+ + + + R+G + +
Sbjct: 251 VESLALCLKALLCEHLFTLDPT------VPPLPFREEVYRSSRPLRVGYYETDNYTMPSP 304
Query: 323 SPLAQVFDHHLQTLRQEGALVIDHLEIANVNSKNSISNDETIAMLAEFKLALNAYLKELV 382
+ + + + L+ + + F +
Sbjct: 305 AMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSAGGLFSDGGRSFLQNFKGDFVDPC 364
Query: 383 TSPVRSLAEVIAFNNKFSDLEKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFE 442
+ + + ++ + L + + + +E + R
Sbjct: 365 LGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNSMRPRSAEKLWKLQHEIEMY-RQSVI 423
Query: 443 KLMSTNNLDALVTP------------RSYAS---TLLA-VGGFPGINVPAGY-------- 478
NLD L+TP R+ + T+L FP VP
Sbjct: 424 AQWKAMNLDVLLTPMLGPALDLNTPGRATGAISYTVLYNCLDFPAGVVPVTTVTAEDDAQ 483
Query: 479 ---------------------DSEGVPFGICFGGLKGTEPKLIEIAYGFEQA 509
+S G+P + L E + EQ
Sbjct: 484 MELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQL 535
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 129 bits (324), Expect = 2e-33
Identities = 87/467 (18%), Positives = 144/467 (30%), Gaps = 60/467 (12%)
Query: 43 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAP 102
++ DLQ + +L+ + I +H + + A +QA
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASGP--------- 53
Query: 103 GSLPGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVTKLREAGAIILGKASL 162
L GI + +KD I T + M T GS G DA VV L+ AGA I+GK +
Sbjct: 54 -----LRGIAVGIKDIIDTAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTT 107
Query: 163 SEWANFRSSNAPNGFCARGGQGKNPYVLSADPWGSSSGSAISVAGNLVAVSLGTETDGSI 222
+ +A+ + N G + SGSA +V ++ ++LGT+T GS+
Sbjct: 108 TAFASRDPTATLNPHNTGHSPGGSS-----------SGSAAAVGAGMIPLALGTQTGGSV 156
Query: 223 LSPSSSNSVVGIKPTVGLTSRAGVIPLTPRQDSVGPICRTVADAVYVLDAIAGFDHNDPA 282
+ P++ IKP+ + GV + D+VG D L A+ G
Sbjct: 157 IRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGR---SEF 213
Query: 283 TSAASKYIPHGGYKQFIKPHGLKGKRLGVVRNPFFNILKGSPLAQVFDHHLQTLRQEGAL 342
+ P G + ++ ++ + Q D
Sbjct: 214 SGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEAWRIH 273
Query: 343 VIDHLEIANVNSKNSISNDETIAMLAEFKLALNAYLKELVTSPVRSLAEVIAFNNKFSDL 402
I A+ S
Sbjct: 274 PIIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVF 333
Query: 403 EKIKEYGQDLLLSAEATDGIGKTEKAAILNLERFTRDGFEKLMSTNNLDALVTPRSYAST 462
E + D+LL+ + G + A R+ R
Sbjct: 334 EGV-----DVLLTY-SAPGTAPAKALASTGDPRYNR------------------------ 363
Query: 463 LLAVGGFPGINVPAGYDSEGVPFGICFGGLKGTEPKLIEIAYGFEQA 509
L + G P +NVP G+P G+ G + + A+ E A
Sbjct: 364 LWTLMGNPCVNVPVL-KVGGLPIGVQVIARFGNDAHALATAWFLEDA 409
>d1dmta_ d.92.1.4 (A:) Neutral endopeptidase (neprilysin) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 696
Score = 34.6 bits (78), Expect = 0.026
Identities = 23/150 (15%), Positives = 41/150 (27%), Gaps = 13/150 (8%)
Query: 255 SVGPICRTVADAVYVLDAIAGFDHNDPATSAASKYIPHG-----GYKQFIKPHGLKGKRL 309
V + + + I S + Y G +G +
Sbjct: 487 VVNAFYSSGRNQIVFPAGILQPPFFSAQQSNSLNYGGIGMVIGHEITHGFDDNGRNFNKD 546
Query: 310 GVVRNPFFNILKGSPLAQVFDHHLQTL-RQEGALVIDHLEIANVNSKNSISNDETIAMLA 368
G + + + F Q + Q G D ++N N++ E IA
Sbjct: 547 GDLVDWWTQQSA-----SNFKEQSQCMVYQYGNFSWDLAGGQHLNGINTLG--ENIADNG 599
Query: 369 EFKLALNAYLKELVTSPVRSLAEVIAFNNK 398
A AY + + L + N+K
Sbjct: 600 GLGQAYRAYQNYIKKNGEEKLLPGLDLNHK 629
>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 516
Score = 27.5 bits (60), Expect = 4.8
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 279 NDPATSAASKYIPHGGYKQ 297
N T A P GG+K
Sbjct: 472 NRKITGALVGVQPFGGFKL 490
>d1oa2a_ b.29.1.11 (A:) Family 12 endo-1,4-beta-glucanase
(cellulase) catalytic domain {Trichoderma reesei, Cel12A
[TaxId: 51453]}
Length = 218
Score = 26.7 bits (59), Expect = 5.5
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 186 NPYVLSADPWGSSSGS------AISVAGNLVAVSLGTETDGSILSPSSSNSVVGIKPTVG 239
N Y +S + WG+S+GS +S++G + + G S NS + I
Sbjct: 13 NGYTVSNNLWGASAGSGFGCVTVVSLSGGASWHADWQWSGGQNNVKSYQNSQIAIPQKRT 72
Query: 240 LTS 242
+ S
Sbjct: 73 VNS 75
>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 295
Score = 26.4 bits (58), Expect = 8.8
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 9/32 (28%)
Query: 391 EVIAFNNKFSDLEKIKE---------YGQDLL 413
E IA+NN + E + E YG+ L
Sbjct: 255 EEIAYNNGWITREDVLEMAEKLEKTDYGKYLR 286
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.385
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,825,864
Number of extensions: 83734
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 12
Length of query: 520
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 431
Effective length of database: 1,185,626
Effective search space: 511004806
Effective search space used: 511004806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.6 bits)