BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009992
(520 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 83 LIARPNNSRSGDYGYSEDDMKRFGA---QEGFD-VYKSIENAADRNVRVRLLQHLGVYPD 138
++ P G Y S M+R A + G + +++ A R + ++ +GV PD
Sbjct: 203 IVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPD 262
Query: 139 FTTEASNLASG 149
TT A ++A G
Sbjct: 263 LTTFAKSIAGG 273
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 83 LIARPNNSRSGDYGYSEDDMKRFGA---QEGFD-VYKSIENAADRNVRVRLLQHLGVYPD 138
++ P G Y S M+R A + G + +++ A R + ++ +GV PD
Sbjct: 203 IVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPD 262
Query: 139 FTTEASNLASG 149
TT A ++A G
Sbjct: 263 LTTFAKSIAGG 273
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 83 LIARPNNSRSGDYGYSEDDMKRFGA---QEGFD-VYKSIENAADRNVRVRLLQHLGVYPD 138
++ P G Y S M+R A + G + +++ A R + ++ +GV PD
Sbjct: 203 IVIEPVQGSGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPD 262
Query: 139 FTTEASNLASG 149
TT A ++A G
Sbjct: 263 LTTFAKSIAGG 273
>pdb|2WRH|H Chain H, Structure Of H1 Duck Albert Hemagglutinin With Human
Receptor
pdb|2WRH|J Chain J, Structure Of H1 Duck Albert Hemagglutinin With Human
Receptor
pdb|2WRH|L Chain L, Structure Of H1 Duck Albert Hemagglutinin With Human
Receptor
Length = 324
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 61 NVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSG--------DYGYSEDDMKRFGAQEGFD 112
NV WL GN L + A W I +NS +G DY + + + E F+
Sbjct: 55 NVAGWLLGNPECDLLLTANSWSYIIETSNSENGTCYPGEFIDYEELREQLSSVSSFEKFE 114
Query: 113 VY 114
++
Sbjct: 115 IF 116
>pdb|3HTO|A Chain A, The Hemagglutinin Structure Of An Avian H1n1 Influenza A
Virus
pdb|3HTP|A Chain A, The Hemagglutinin Structure Of An Avian H1n1 Influenza A
Virus In Complex With Lsta
pdb|3HTQ|A Chain A, The Hemagglutinin Structure Of An Avian H1n1 Influenza A
Virus In Complex With Lstc
pdb|3HTT|A Chain A, The Hemagglutinin Structure Of An Avian H1n1 Influenza A
Virus In Complex With 2,3-Sialyllactose
Length = 324
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 61 NVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSG--------DYGYSEDDMKRFGAQEGFD 112
NV WL GN L + A W I +NS +G DY + + + E F+
Sbjct: 56 NVAGWLLGNPECDLLLTANSWSYIIETSNSENGTCYPGEFIDYEELREQLSSVSSFERFE 115
Query: 113 VY 114
++
Sbjct: 116 IF 117
>pdb|4GXX|A Chain A, Crystal Structure Of The "avianized" 1918 Influenza Virus
Hemagglutinin
pdb|4GXX|C Chain C, Crystal Structure Of The "avianized" 1918 Influenza Virus
Hemagglutinin
pdb|4GXX|E Chain E, Crystal Structure Of The "avianized" 1918 Influenza Virus
Hemagglutinin
Length = 331
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 61 NVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSG--------DYGYSEDDMKRFGAQEGFD 112
N+ WL GN L + A W I +NS +G DY + + + E F+
Sbjct: 60 NIAGWLLGNPECDLLLTASSWSYIVETSNSENGTCYPGDFIDYEELREQLSSVSSFEKFE 119
Query: 113 VY 114
++
Sbjct: 120 IF 121
>pdb|1RD8|A Chain A, Crystal Sructure Of The 1918 Human H1 Hemagglutinin
Precursor (Ha0)
pdb|1RD8|C Chain C, Crystal Sructure Of The 1918 Human H1 Hemagglutinin
Precursor (Ha0)
pdb|1RD8|E Chain E, Crystal Sructure Of The 1918 Human H1 Hemagglutinin
Precursor (Ha0)
Length = 335
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 61 NVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSG--------DYGYSEDDMKRFGAQEGFD 112
N+ WL GN L + A W I +NS +G DY + + + E F+
Sbjct: 64 NIAGWLLGNPECDLLLTASSWSYIVETSNSENGTCYPGDFIDYEELREQLSSVSSFEKFE 123
Query: 113 VY 114
++
Sbjct: 124 IF 125
>pdb|2WRG|H Chain H, Structure Of H1 1918 Hemagglutinin With Human Receptor
pdb|2WRG|J Chain J, Structure Of H1 1918 Hemagglutinin With Human Receptor
pdb|2WRG|L Chain L, Structure Of H1 1918 Hemagglutinin With Human Receptor
Length = 326
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 61 NVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSG--------DYGYSEDDMKRFGAQEGFD 112
N+ WL GN L + A W I +NS +G DY + + + E F+
Sbjct: 56 NIAGWLLGNPECDLLLTASSWSYIVETSNSENGTCYPGDFIDYEELREQLSSVSSFEKFE 115
Query: 113 VY 114
++
Sbjct: 116 IF 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,871,580
Number of Sequences: 62578
Number of extensions: 647803
Number of successful extensions: 1222
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1222
Number of HSP's gapped (non-prelim): 14
length of query: 520
length of database: 14,973,337
effective HSP length: 103
effective length of query: 417
effective length of database: 8,527,803
effective search space: 3556093851
effective search space used: 3556093851
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)