Query 009992
Match_columns 520
No_of_seqs 276 out of 2242
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 19:45:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009992.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009992hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3603 Predicted phospholipas 100.0 5.3E-82 1.1E-86 640.8 37.3 400 31-514 46-451 (456)
2 PHA02820 phospholipase-D-like 100.0 9.8E-72 2.1E-76 590.8 42.1 386 31-513 2-391 (424)
3 PHA03003 palmytilated EEV memb 100.0 3.5E-56 7.5E-61 466.1 38.0 360 31-508 9-369 (369)
4 PRK12452 cardiolipin synthetas 100.0 1.4E-46 3.1E-51 407.7 29.7 326 55-511 147-489 (509)
5 PRK01642 cls cardiolipin synth 100.0 2.6E-46 5.7E-51 404.4 30.5 320 56-511 124-463 (483)
6 PRK11263 cardiolipin synthase 100.0 8.7E-46 1.9E-50 391.3 29.3 317 58-511 18-352 (411)
7 PF13918 PLDc_3: PLD-like doma 100.0 7.4E-39 1.6E-43 296.9 16.8 175 192-424 1-176 (177)
8 PRK09428 pssA phosphatidylseri 100.0 1.7E-35 3.6E-40 315.4 29.7 342 57-500 34-406 (451)
9 COG1502 Cls Phosphatidylserine 100.0 4E-35 8.8E-40 313.7 29.0 333 56-510 68-417 (438)
10 PRK05443 polyphosphate kinase; 100.0 2.5E-28 5.4E-33 270.9 26.6 273 59-501 349-647 (691)
11 TIGR03705 poly_P_kin polyphosp 99.9 6.8E-25 1.5E-29 242.3 25.4 277 59-501 340-639 (672)
12 PLN02866 phospholipase D 99.9 6.9E-21 1.5E-25 214.0 29.6 155 57-228 343-550 (1068)
13 PRK12452 cardiolipin synthetas 99.9 2.8E-22 6.2E-27 218.0 15.7 150 33-225 327-481 (509)
14 PRK01642 cls cardiolipin synth 99.9 2E-21 4.4E-26 210.7 16.2 149 34-225 302-455 (483)
15 PRK13912 nuclease NucT; Provis 99.9 5.8E-21 1.3E-25 180.7 14.9 139 319-502 33-174 (177)
16 PRK13912 nuclease NucT; Provis 99.9 1.1E-20 2.3E-25 178.9 16.6 139 58-225 33-175 (177)
17 PRK11263 cardiolipin synthase 99.8 2.2E-20 4.7E-25 198.1 16.1 149 34-225 190-344 (411)
18 PHA03003 palmytilated EEV memb 99.8 9.2E-20 2E-24 191.3 14.1 157 39-225 201-364 (369)
19 cd00138 PLDc Phospholipase D. 99.8 4.4E-19 9.4E-24 166.4 16.2 147 56-224 19-169 (176)
20 PLN02352 phospholipase D epsil 99.8 1.8E-17 4E-22 183.2 31.3 185 31-227 157-402 (758)
21 PHA02820 phospholipase-D-like 99.8 4E-19 8.7E-24 189.2 17.1 165 37-223 201-379 (424)
22 PLN02270 phospholipase D alpha 99.8 2.2E-17 4.8E-22 182.9 28.6 183 31-228 175-433 (808)
23 cd00138 PLDc Phospholipase D. 99.8 2.5E-18 5.5E-23 161.2 15.1 146 319-502 21-169 (176)
24 PF13091 PLDc_2: PLD-like doma 99.8 3.7E-18 8E-23 151.2 9.8 119 63-221 1-126 (126)
25 PLN03008 Phospholipase D delta 99.7 1.1E-15 2.3E-20 169.7 29.9 178 31-226 205-467 (868)
26 PF13091 PLDc_2: PLD-like doma 99.7 6.7E-17 1.4E-21 143.2 11.2 124 324-499 1-126 (126)
27 COG1502 Cls Phosphatidylserine 99.7 1.8E-16 3.8E-21 169.9 16.2 152 35-225 251-410 (438)
28 KOG1329 Phospholipase D1 [Lipi 99.6 3.8E-14 8.2E-19 156.9 24.5 154 56-227 301-500 (887)
29 PRK09428 pssA phosphatidylseri 99.5 4.2E-14 9.1E-19 151.5 14.3 130 58-222 251-406 (451)
30 KOG3603 Predicted phospholipas 99.5 2.2E-13 4.8E-18 140.3 17.3 157 319-511 72-234 (456)
31 PRK05443 polyphosphate kinase; 99.4 6.7E-13 1.4E-17 148.3 13.7 133 321-502 350-495 (691)
32 PF13090 PP_kinase_C: Polyphos 99.4 2.8E-10 6.1E-15 115.8 26.2 286 60-508 20-325 (352)
33 PLN02352 phospholipase D epsil 99.0 8.2E-10 1.8E-14 123.1 11.5 161 32-205 425-646 (758)
34 TIGR03705 poly_P_kin polyphosp 99.0 2.2E-09 4.7E-14 119.8 13.4 125 61-225 507-641 (672)
35 PLN02866 phospholipase D 99.0 1.5E-09 3.4E-14 123.4 12.3 158 31-205 706-906 (1068)
36 COG0855 Ppk Polyphosphate kina 99.0 1.1E-07 2.4E-12 102.9 23.3 277 58-500 352-650 (696)
37 PF07894 DUF1669: Protein of u 99.0 1.5E-08 3.2E-13 101.3 14.8 140 57-225 133-282 (284)
38 PLN03008 Phospholipase D delta 98.9 3E-08 6.5E-13 111.2 15.0 164 33-205 526-755 (868)
39 KOG1329 Phospholipase D1 [Lipi 98.8 2.2E-08 4.7E-13 111.9 10.7 156 36-205 532-740 (887)
40 PLN02270 phospholipase D alpha 98.7 5.3E-08 1.1E-12 109.1 11.8 166 31-203 456-694 (808)
41 smart00155 PLDc Phospholipase 98.6 3.1E-08 6.8E-13 64.9 3.5 27 166-192 2-28 (28)
42 COG3886 Predicted HKD family n 98.6 3.1E-07 6.6E-12 86.0 11.4 133 319-501 39-179 (198)
43 PF00614 PLDc: Phospholipase D 98.4 1.4E-07 3E-12 61.6 2.0 26 167-192 3-28 (28)
44 smart00155 PLDc Phospholipase 98.4 2.9E-07 6.4E-12 60.2 2.7 25 447-471 3-28 (28)
45 PF07894 DUF1669: Protein of u 98.4 1.9E-05 4.2E-10 79.2 16.8 147 319-502 134-281 (284)
46 KOG3964 Phosphatidylglycerolph 98.0 0.0006 1.3E-08 70.6 19.8 134 58-218 39-194 (469)
47 COG3886 Predicted HKD family n 98.0 9.1E-05 2E-09 69.7 12.5 136 57-223 38-179 (198)
48 COG0855 Ppk Polyphosphate kina 97.9 0.0001 2.3E-09 80.4 11.4 130 321-498 354-495 (696)
49 PF11495 Regulator_TrmB: Archa 97.7 5.8E-05 1.3E-09 74.6 6.5 125 56-225 8-134 (233)
50 PF00614 PLDc: Phospholipase D 97.7 3E-05 6.5E-10 50.7 2.2 25 447-471 3-28 (28)
51 PF11495 Regulator_TrmB: Archa 97.6 0.0002 4.4E-09 70.7 7.9 126 316-503 7-134 (233)
52 PF13090 PP_kinase_C: Polyphos 97.5 0.00039 8.5E-09 71.5 8.8 132 322-501 21-164 (352)
53 PF13918 PLDc_3: PLD-like doma 97.4 0.0012 2.5E-08 62.3 9.5 74 40-133 68-142 (177)
54 PF09565 RE_NgoFVII: NgoFVII r 94.3 0.44 9.6E-06 48.8 11.2 50 448-498 80-136 (296)
55 PF09565 RE_NgoFVII: NgoFVII r 93.0 0.82 1.8E-05 46.9 10.6 53 166-220 78-136 (296)
56 KOG3964 Phosphatidylglycerolph 89.8 0.73 1.6E-05 48.4 6.3 165 305-505 33-203 (469)
57 PF06087 Tyr-DNA_phospho: Tyro 79.0 1.3 2.9E-05 48.0 2.5 39 166-204 346-402 (443)
58 PF06087 Tyr-DNA_phospho: Tyro 74.5 1.9 4.1E-05 46.9 2.1 78 111-194 47-134 (443)
59 COG1378 Predicted transcriptio 52.3 22 0.00047 35.6 4.7 52 317-382 118-169 (247)
60 COG1378 Predicted transcriptio 41.4 36 0.00079 34.0 4.4 50 57-133 119-168 (247)
61 PF09345 DUF1987: Domain of un 37.4 42 0.0009 28.8 3.5 21 110-130 62-82 (99)
62 COG4742 Predicted transcriptio 33.4 1.6E+02 0.0034 29.8 7.4 124 322-501 130-253 (260)
63 PF14871 GHL6: Hypothetical gl 30.4 1.6E+02 0.0034 26.5 6.3 58 322-381 3-66 (132)
64 PRK14758 hypothetical protein; 29.6 3.5 7.6E-05 26.3 -3.1 20 1-20 1-20 (27)
65 PF08350 DUF1724: Domain of un 29.4 1.4E+02 0.003 23.3 5.0 47 453-503 16-62 (64)
66 PF03749 SfsA: Sugar fermentat 27.4 1.5E+02 0.0032 29.1 6.0 26 355-381 178-203 (215)
67 PRK00347 putative DNA-binding 25.5 2.1E+02 0.0044 28.5 6.7 72 302-381 145-217 (234)
68 TIGR00230 sfsA sugar fermentat 20.9 2.4E+02 0.0053 27.9 6.1 26 355-381 190-215 (232)
69 PF07476 MAAL_C: Methylasparta 20.7 95 0.0021 30.7 3.1 65 323-394 94-158 (248)
No 1
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=100.00 E-value=5.3e-82 Score=640.84 Aligned_cols=400 Identities=31% Similarity=0.523 Sum_probs=348.9
Q ss_pred CCCCeEEEEEeccCCCCCCCCCCCCcccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCC
Q 009992 31 SRTKCKAWLVQSIPTDMPHLPRVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEG 110 (520)
Q Consensus 31 ~~~~c~~~lv~s~P~~~~~~~~~~~~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g 110 (520)
|..+|++.||||||.|+.++...+. .+|.++|+.+|++|+++++|++|||+|++.|. |. .+.++..|
T Consensus 46 c~~~C~~~vvESIP~gl~f~~~t~~-~sT~eaW~~Ll~sA~~eldIas~ywsL~~~d~--------~~----~dsSt~~G 112 (456)
T KOG3603|consen 46 CGDTCKLVLVESIPAGLTFPDASPF-LSTKEAWLELLSTAQEELDIASFYWSLTGKDT--------GV----VDSSTQYG 112 (456)
T ss_pred hcCceeEEEEecccccCcCcccCCC-ccHHHHHHHHhhccceEEEEEEEeecccccee--------cc----CCCcchHH
Confidence 9999999999999999999887777 89999999999999999999999999986532 11 23456779
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCCCCcchhHHHHHcCCCC-eEEEEeccccccCCCceeeEEEEEcCcEEEecccCCC
Q 009992 111 FDVYKSIENAADRNVRVRLLQHLGVYPDFTTEASNLASGRKN-VENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANND 189 (520)
Q Consensus 111 ~~i~~aL~~aa~rGV~VrIl~d~g~~~~~~~~~~~L~~~~~g-v~v~~~~~~~~~~~~~lH~K~~VvD~~~~~iGSaN~d 189 (520)
+.+++.|..++.+||+|||..+..+......+...|.. .| ++++.+++.++.++|.+|+|+||||++|+|+||+|||
T Consensus 113 ~~vy~~L~~~~~~gIsiriA~~~p~~~~~~~d~~~Le~--~Gaa~vr~id~~~l~g~GvlHtKf~vvD~khfylGSaNfD 190 (456)
T KOG3603|consen 113 EQVYNTLLALAKSGVKIRIAQSYPSGGPPNADLQVLES--LGLAQVRSIDMNRLTGGGVLHTKFWVVDIKHFYLGSANFD 190 (456)
T ss_pred HHHHHHHHHhccCCeEEEEEeecCCCCCCcccHHHHHh--CCCceEEeecccccccCceEEEEEEEEecceEEEeccccc
Confidence 99999999999999999999986222223345566765 45 8888888888888999999999999999999999999
Q ss_pred cccccccccccEEEECChHHHHHHHHHHHHHHhcCCCCCCccccccchhhhhccccCCC-CcccCCCCCccCCCCCCCcc
Q 009992 190 WKSLTQVKEVGIYLVGCPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQANRTVPC-WSHFLDPKGRCRSPLPPVLE 268 (520)
Q Consensus 190 ~~sl~~~~E~gv~i~~~~~la~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~pl~~~~~ 268 (520)
|||+++.+|+||.++||||+|+||.++|++||.++.++.. +|. ||..+.+.++...|+..
T Consensus 191 WrSlTqvkElGv~v~NCpclakDL~kiFe~yW~lg~~~s~----------------~p~~wp~~~st~~N~~~p~~~--- 251 (456)
T KOG3603|consen 191 WRSLTQVKELGVVVRNCPCLAKDLKKIFERYWYLGNAKSL----------------IPKKWPNCYSTHYNKPLPMKI--- 251 (456)
T ss_pred hhhccceeEeeeEEecChhHHHHHHHHHHHHhcCCCCCcc----------------CCCCCcccccccccccCccee---
Confidence 9999999999999999999999999999999999987752 344 87776666655433321
Q ss_pred CCCcCCCCccCCcccccccccCCCCCCCCCCCceeeeecCCCCCCCCCCcchHHHHHHHHhhcCCcCEEEEEEeeeeeee
Q 009992 269 VPHVEGYPILSDPYMFRETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTRATLRISTMDWLGQS 348 (520)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~sP~~~~~~~r~~~~~all~~I~~Ak~~~~I~I~~~~y~P~~ 348 (520)
.+ + +++...|+++|||.++|+||+.|++|+++.|+.|++ +|+|++|+|+|+.
T Consensus 252 ------------------~~--d------g~~~~~y~saSP~~~~~~grt~DL~ail~~i~~A~~--fv~isVMdY~Ps~ 303 (456)
T KOG3603|consen 252 ------------------AV--D------GTPATPYISASPPPLNPSGRTWDLEAILNTIDEAQK--FVYISVMDYFPST 303 (456)
T ss_pred ------------------ec--C------CCCcceEEccCCCCCCCCCCchhHHHHHHHHHHHhh--heeeeehhccchh
Confidence 11 1 235678999999999999999999999999999999 9999999999999
Q ss_pred ccccccccHHHHHHHHHHHHHcCCCEEEEEeccccCCCcChHHHHHHhhhccccccccCCCCCCCceeEEEEEcCCCCCC
Q 009992 349 QYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLT 428 (520)
Q Consensus 349 ~~~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~~~~~~~~~~~~l~sL~~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~ 428 (520)
.|.++.+|| .|++|||+||+ |||+||+|++.|.|+++.|..||+||+.|... ..+..|+||+|.+|..+.
T Consensus 304 ~y~k~~~fw-~iDdaiR~aa~-RgV~vR~lvs~~~~~~~~m~~~L~SLq~l~~~-------~~~~~iqvk~f~VP~~~~- 373 (456)
T KOG3603|consen 304 IYSKNHRFW-EIDDAIRRAAV-RGVKVRLLVSCWKHSEPSMFRFLRSLQDLSDP-------LENGSIQVKFFIVPQTNI- 373 (456)
T ss_pred eeecCcchh-hhhHHHHHHhh-cceEEEEEEeccCCCCchHHHHHHHHHHhcCc-------cccCceEEEEEEeCCCcc-
Confidence 999999999 99999999997 99999999999999999999999999976432 246789999999996432
Q ss_pred CCcccCCCCCCCCCCCcceeecceeEEecCeEEEccCCCCcccccccCCeeeeecCh----hHHHHHHHHHHhhccCCCc
Q 009992 429 GPAIQNGSNTGNIYPGFTRVNHGKYAVSDSRAHIGTSNLVWDYFYTTAGVSFGTYNP----AIVSQLQEIFDADWNSPYA 504 (520)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~lHaK~~ViD~~a~IGS~N~d~~sf~~n~e~~l~~~~~----~~~~~l~~~F~~dw~s~ya 504 (520)
.++||.|++|+||||+|..+||||+||+++||..++++++++... .+++||+++|+|||+|+|+
T Consensus 374 ------------~~ip~~Rv~HnKymVTe~aayIGTSNws~dYf~~TaG~~ivv~q~~~~~~~~~ql~~vFeRdW~S~Ys 441 (456)
T KOG3603|consen 374 ------------EKIPFARVNHNKYMVTESAAYIGTSNWSGDYFTSTAGTAIVVRQTPHKGTLVSQLKAVFERDWNSTYS 441 (456)
T ss_pred ------------ccCchhhhccceeEEeecceeeeccCCCccceeccCceEEEEecCCCCCcHHHHHHHHHhhccccccc
Confidence 468999999999999999999999999999999999999998766 8999999999999999999
Q ss_pred ccccccCCcc
Q 009992 505 FPVEELGDGH 514 (520)
Q Consensus 505 ~~l~~~~~~~ 514 (520)
+||+...++-
T Consensus 442 ~~L~~~~~~~ 451 (456)
T KOG3603|consen 442 HPLDKYAEGY 451 (456)
T ss_pred ccchhcccCc
Confidence 9999998843
No 2
>PHA02820 phospholipase-D-like protein; Provisional
Probab=100.00 E-value=9.8e-72 Score=590.84 Aligned_cols=386 Identities=28% Similarity=0.454 Sum_probs=313.3
Q ss_pred CCCCeEEEEEeccCCCCCCCCCCCCcccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCC
Q 009992 31 SRTKCKAWLVQSIPTDMPHLPRVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEG 110 (520)
Q Consensus 31 ~~~~c~~~lv~s~P~~~~~~~~~~~~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g 110 (520)
|..+|+++||||+|.++.+.. .+++|+++|.++|.+||++|+|++|||.+... .++..|
T Consensus 2 ~~~~~~~~~vesiP~~~~~~~---~~~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d~------------------~~~~~G 60 (424)
T PHA02820 2 NPDNTIAVITETIPIGMQFDK---VYLSTFNFWREILSNTTKTLDISSFYWSLSDE------------------VGTNFG 60 (424)
T ss_pred CccccEEEEEEecCCCCCCCC---CCCCHHHHHHHHHHhhCcEEEEEeEEEecCcc------------------ccchhH
Confidence 889999999999999997743 57899999999999999999999999964210 023568
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCCCCcchhHHHHHcCCCCeEEEEeccccccCCCceeeEEEEEcCcEEEecccCCCc
Q 009992 111 FDVYKSIENAADRNVRVRLLQHLGVYPDFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANNDW 190 (520)
Q Consensus 111 ~~i~~aL~~aa~rGV~VrIl~d~g~~~~~~~~~~~L~~~~~gv~v~~~~~~~~~~~~~lH~K~~VvD~~~~~iGSaN~d~ 190 (520)
++|+++|++||+|||+|||++|... ......+.|.. +||+++.++... +.++++|+|++|||++++|+||+||||
T Consensus 61 ~~i~~aL~~aA~rGV~VRIL~d~~~--~~~~~~~~L~~--aGv~v~~~~~~~-~~~~~~HrK~~VIDg~~~~iGS~Nid~ 135 (424)
T PHA02820 61 TMILNEIIQLPKRGVRVRIAVNKSN--KPLKDVELLQM--AGVEVRYIDITN-ILGGVLHTKFWISDNTHIYLGSANMDW 135 (424)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCC--CchhhHHHHHh--CCCEEEEEecCC-CCcccceeeEEEECCCEEEEeCCcCCh
Confidence 9999999999999999999999621 12334566775 689998776433 346899999999999999999999999
Q ss_pred ccccccccccEEEECChHHHHHHHHHHHHHHhcCCCCCCccccccchhhhhccccCCCCcccCCCCCccCCCCCCCccCC
Q 009992 191 KSLTQVKEVGIYLVGCPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQANRTVPCWSHFLDPKGRCRSPLPPVLEVP 270 (520)
Q Consensus 191 ~sl~~~~E~gv~i~~~~~la~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~pl~~~~~~~ 270 (520)
+|+.+++|+|+.+.+|+++|++|+++|+.+|..++.+. ...|+..+++.++...|..
T Consensus 136 rsl~~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~-----------------~~~~~~~~~~~~~~~~p~~------ 192 (424)
T PHA02820 136 RSLTQVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNL-----------------PYNWKNFYPLYYNTDHPLS------ 192 (424)
T ss_pred hhhhhCCceEEEEecchHHHHHHHHHHHHHHHhhccCC-----------------CCccccccccccccCCCcc------
Confidence 99999999999998778999999999999999875322 0123332211111111110
Q ss_pred CcCCCCccCCcccccccccCCCCCCCCCCCceeeeecCCCCCCCCCCcchHHHHHHHHhhcCCcCEEEEEEeeeeeeec-
Q 009992 271 HVEGYPILSDPYMFRETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTRATLRISTMDWLGQSQ- 349 (520)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~sP~~~~~~~r~~~~~all~~I~~Ak~~~~I~I~~~~y~P~~~- 349 (520)
.... +....++++++|+...+.+|+.++++++++|++||+ +|+|++|||+|+..
T Consensus 193 -----------------~~~~------~~~~~~~~sssP~~~~~~~r~~~~~~~l~~I~~Ak~--~I~I~tpyfvP~~~~ 247 (424)
T PHA02820 193 -----------------LNVS------GVPHSVFIASAPQQLCTMERTNDLTALLSCIRNASK--FVYVSVMNFIPIIYS 247 (424)
T ss_pred -----------------cccC------CccceEEEeCCChhhcCCCCCchHHHHHHHHHHHhh--EEEEEEccccceeec
Confidence 0001 112357999999988888889999999999999999 99999999999954
Q ss_pred cccccccHHHHHHHHHHHHHcCCCEEEEEeccccCCCcChHHHHHHhhhccccccccCCCCCCCceeEEEEEcCCCCCCC
Q 009992 350 YLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTG 429 (520)
Q Consensus 350 ~~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~~~~~~~~~~~~l~sL~~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~ 429 (520)
+.++.+|||.|++||++||.+|||+||||+++|.++.....+++++|.. |+. ++.+|+||+|.+|..+
T Consensus 248 ~~~~~~yw~~i~~AL~~AA~~RGV~VriLvp~~~d~~~~~~a~~~~l~~---L~~------~gv~I~Vk~y~~p~~~--- 315 (424)
T PHA02820 248 KAGKILFWPYIEDELRRAAIDRKVSVKLLISCWQRSSFIMRNFLRSIAM---LKS------KNINIEVKLFIVPDAD--- 315 (424)
T ss_pred cCCcccchHHHHHHHHHHHHhCCCEEEEEEeccCCCCccHHHHHHHHHH---Hhc------cCceEEEEEEEcCccc---
Confidence 6677899999999999866689999999999998887777677777764 321 2457999999998532
Q ss_pred CcccCCCCCCCCCCCcceeecceeEEecCeEEEccCCCCcccccccCCeeeeecCh---hHHHHHHHHHHhhccCCCccc
Q 009992 430 PAIQNGSNTGNIYPGFTRVNHGKYAVSDSRAHIGTSNLVWDYFYTTAGVSFGTYNP---AIVSQLQEIFDADWNSPYAFP 506 (520)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~lHaK~~ViD~~a~IGS~N~d~~sf~~n~e~~l~~~~~---~~~~~l~~~F~~dw~s~ya~~ 506 (520)
..+|+++++|+|+||+|++++|||+|||+|||..|+|+++++.++ +++++|+++|++||+|+|+++
T Consensus 316 -----------~~~~~~~f~HaK~~vvD~~a~IGTsN~D~rsf~~n~ev~~~i~~~~~~~~~~~l~~~F~~D~~s~y~~~ 384 (424)
T PHA02820 316 -----------PPIPYSRVNHAKYMVTDKTAYIGTSNWTGNYFTDTCGVSINITPDDGLGLRQQLEDIFIRDWNSKYSYE 384 (424)
T ss_pred -----------ccCCcceeeeeeEEEEcccEEEECCcCCHHHHhccCcEEEEEecCCcHHHHHHHHHHHHHhcCCCcccc
Confidence 346888999999999998899999999999999999999999876 799999999999999999999
Q ss_pred ccccCCc
Q 009992 507 VEELGDG 513 (520)
Q Consensus 507 l~~~~~~ 513 (520)
+..+..+
T Consensus 385 l~~~~~~ 391 (424)
T PHA02820 385 LYDTSPT 391 (424)
T ss_pred cccCCCC
Confidence 9954444
No 3
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=100.00 E-value=3.5e-56 Score=466.07 Aligned_cols=360 Identities=23% Similarity=0.385 Sum_probs=283.3
Q ss_pred CCCCeEEEEEeccCCCCCCCCCCCCcccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCC
Q 009992 31 SRTKCKAWLVQSIPTDMPHLPRVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEG 110 (520)
Q Consensus 31 ~~~~c~~~lv~s~P~~~~~~~~~~~~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g 110 (520)
....| ++|||+|.++++. +...++|++|+++|++||++|+|++|+|.+. ++..|
T Consensus 9 ~~~~~--~~v~~~p~~~~~~---~~~~~~~~~l~~~I~~Ak~~I~i~~yi~~~~---------------------~d~~g 62 (369)
T PHA03003 9 PGAGC--RIVETLPKSLGIA---TQHMSTYECFDEIISQAKKYIYIASFCCNLR---------------------STPEG 62 (369)
T ss_pred CCCCe--EEEEeCCCCCCCC---CCCCCHHHHHHHHHHhhhhEEEEEEEEeccc---------------------CCchH
Confidence 44566 5999999999765 3567999999999999999999998875332 14779
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCCCCcchhHHHHHcCCCCeEEEEeccccccCCCceeeEEEEEcCcEEEecccCCCc
Q 009992 111 FDVYKSIENAADRNVRVRLLQHLGVYPDFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANNDW 190 (520)
Q Consensus 111 ~~i~~aL~~aa~rGV~VrIl~d~g~~~~~~~~~~~L~~~~~gv~v~~~~~~~~~~~~~lH~K~~VvD~~~~~iGSaN~d~ 190 (520)
++|+++|++||+|||+||||+|+.+ .....+.|++ +||+++.+++.++...+.+|+|++||||+++|+||+|++|
T Consensus 63 ~~i~~aL~~aa~rGV~Vril~D~~~---~~~~~~~L~~--~Gv~v~~~~~~~~~~~~~~~~k~~IiDg~~~y~Gg~Ni~~ 137 (369)
T PHA03003 63 RLILDKLKEAAESGVKVTILVDEQS---GDKDEEELQS--SNINYIKVDIGKLNNVGVLLGSFWVSDDRRCYIGNASLTG 137 (369)
T ss_pred HHHHHHHHHhccCCCeEEEEecCCC---CCccHHHHHH--cCCEEEEEeccccCCCCceeeeEEEEcCcEEEEecCccCC
Confidence 9999999999999999999999621 2345677876 6899988775543224678999999999999999999999
Q ss_pred ccccccccccEEEECChHHHHHHHHHHHHHHhcCCCCCCccccccchhhhhccccCCCCcccCCCCCccCCCCCCCccCC
Q 009992 191 KSLTQVKEVGIYLVGCPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQANRTVPCWSHFLDPKGRCRSPLPPVLEVP 270 (520)
Q Consensus 191 ~sl~~~~E~gv~i~~~~~la~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~pl~~~~~~~ 270 (520)
+++++++|.|+... ++++|.+|+++|..+|..++++... . ..+. ++..|.+.
T Consensus 138 ~~~~~~~~~g~~~d-~g~~v~~l~~~F~~~w~~~~~~~~~-~------------~~~~---------~~~~~~~~----- 189 (369)
T PHA03003 138 GSISTIKTLGVYST-YPPLATDLRRRFDTFKAFNKNKSVF-N------------RLCC---------ACCLPVST----- 189 (369)
T ss_pred cccCccccceeEec-CcHHHHHHHHHHHHHHHhcCCCCcc-c------------cccc---------ccCCcccc-----
Confidence 99999999999886 3799999999999999987544210 0 0000 00000000
Q ss_pred CcCCCCccCCcccccccccCCCCCCCCCCCceeeeecCCCCCCCCCCcchHHHHHHHHhhcCCcCEEEEEEeeeeeeecc
Q 009992 271 HVEGYPILSDPYMFRETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTRATLRISTMDWLGQSQY 350 (520)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~sP~~~~~~~r~~~~~all~~I~~Ak~~~~I~I~~~~y~P~~~~ 350 (520)
+ .....+ ...++++++|....+.+|+.+.++++++|++||+ +|+|++|||+|+...
T Consensus 190 ----------~----~~~~~~--------~~~~~~~s~P~~~~~~~~~~~~~~ll~~I~~Ak~--~I~I~t~yf~P~~~~ 245 (369)
T PHA03003 190 ----------K----YHINNP--------IGGVFFSDSPEHLLGYSRTLDADVVLHKIKSAKK--SIDLELLSLVPVIRE 245 (369)
T ss_pred ----------c----ccccCC--------CcceEEecCChHHcCCCCCcCHHHHHHHHHHHhh--EEEEEEeccccEEee
Confidence 0 000001 1124788888776666677788999999999999 999999999998766
Q ss_pred ccccccHHHHHHHHHHHHHcCCCEEEEEeccccCCCcChHHHHHHhhhccccccccCCCCCCCceeEEEEEcCCCCCCCC
Q 009992 351 LKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGP 430 (520)
Q Consensus 351 ~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~~~~~~~~~~~~l~sL~~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~ 430 (520)
.+...+|+.|.+||++||.+|||+||||+++|.++++....+++.|.+ .+. ...++||+|.+
T Consensus 246 d~~~~~~~~i~~AL~~AAa~RGV~VRILv~~~~~~~~~~~~~~~~L~~---~G~-------~~~i~vri~~~-------- 307 (369)
T PHA03003 246 DDKTTYWPDIYNALIRAAINRGVKVRLLVGSWKKNDVYSMASVKSLQA---LCV-------GNDLSVKVFRI-------- 307 (369)
T ss_pred CCCCccHHHHHHHHHHHHHcCCCEEEEEEecCCcCCchhhhHHHHHHH---cCC-------CCCceEeeecC--------
Confidence 666789999999999985489999999999986665555677887764 111 12467888863
Q ss_pred cccCCCCCCCCCCCcceeecceeEEec-CeEEEccCCCCcccccccCCeeeeecChhHHHHHHHHHHhhccCCCccccc
Q 009992 431 AIQNGSNTGNIYPGFTRVNHGKYAVSD-SRAHIGTSNLVWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWNSPYAFPVE 508 (520)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~lHaK~~ViD-~~a~IGS~N~d~~sf~~n~e~~l~~~~~~~~~~l~~~F~~dw~s~ya~~l~ 508 (520)
. +|+|+||+| ++++|||+|||++||..|.|+.+++.+++++++++++|++||+++|++||+
T Consensus 308 ----------------~-~H~K~~VVD~~~a~iGS~N~d~~s~~~~~e~~~~~~~~~~a~~l~~~F~~dW~~~~~~~l~ 369 (369)
T PHA03003 308 ----------------P-NNTKLLIVDDEFAHITSANFDGTHYLHHAFVSFNTIDKELVKELSAIFERDWTSSYSKPLK 369 (369)
T ss_pred ----------------C-CCceEEEEcCCEEEEeccccCchhhccCCCeEEecCChhHHHHHHHHHHHHhCCccceeCc
Confidence 1 799999998 799999999999999999999999999999999999999999999999985
No 4
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=1.4e-46 Score=407.66 Aligned_cols=326 Identities=15% Similarity=0.107 Sum_probs=241.3
Q ss_pred CcccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEecC-
Q 009992 55 GIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHL- 133 (520)
Q Consensus 55 ~~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d~- 133 (520)
+...++++++++|++||++|+|++|.| .+ |..|+.++++|.+|++|||+|||++|+
T Consensus 147 ~g~~~~~~l~~~I~~Ak~~I~i~~yi~---~~--------------------d~~g~~i~~aL~~aa~rGV~VRiL~D~~ 203 (509)
T PRK12452 147 NGDQTFSEILQAIEQAKHHIHIQYYIY---KS--------------------DEIGTKVRDALIKKAKDGVIVRFLYDGL 203 (509)
T ss_pred CHHHHHHHHHHHHHHhCCEEEEEEEEE---eC--------------------CcHHHHHHHHHHHHHHCCCEEEEEEECC
Confidence 345788999999999999999995444 11 367899999999999999999999998
Q ss_pred CCCCCcchhHHHHHcCCCCeEEEEecccc-----ccCCCceeeEEEEEcCcEEEecccCCCccccc------ccccccEE
Q 009992 134 GVYPDFTTEASNLASGRKNVENVTLLLGD-----WWGSGIVHAKVWISDCRDVYIGSANNDWKSLT------QVKEVGIY 202 (520)
Q Consensus 134 g~~~~~~~~~~~L~~~~~gv~v~~~~~~~-----~~~~~~lH~K~~VvD~~~~~iGSaN~d~~sl~------~~~E~gv~ 202 (520)
|+........+.|++ +||++..+++.. ..-+.|+|+|++||||+++|+||+|+....+. .|+|+++.
T Consensus 204 Gs~~~~~~~~~~L~~--aGi~v~~f~P~~~~~~~~~~n~RnHRKi~VIDg~ia~~GG~Ni~d~y~~~~~~~~~WrD~~~~ 281 (509)
T PRK12452 204 GSNTLRRRFLQPMKE--AGIEIVEFDPIFSAWLLETVNYRNHRKIVIVDGEIGFTGGLNVGDEYLGRSKKFPVWRDSHLK 281 (509)
T ss_pred CCCCCCHHHHHHHHh--CCeEEEEecCcccccccccccCCCCCeEEEEcCCEEEeCCcccchhhcCCCCCCCCceEEEEE
Confidence 664323445667776 789988765321 12357899999999999999999999765543 48999999
Q ss_pred EECChHHHHHHHHHHHHHHhcCCCCCCccccccchhhhhccccCCCCcccCCCCCccCCCCCCCccCCCcCCCCccCCcc
Q 009992 203 LVGCPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQANRTVPCWSHFLDPKGRCRSPLPPVLEVPHVEGYPILSDPY 282 (520)
Q Consensus 203 i~~~~~la~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~ 282 (520)
++| +.|.+++..|..+|...+.+.. .+.|.. ... .++.| ..
T Consensus 282 i~G--p~V~~l~~~F~~dW~~~~~~~~----------------~~~~~~-----------~~~---~~~~~---~~---- 322 (509)
T PRK12452 282 VEG--KALYKLQAIFLEDWLYASSGLN----------------TYSWDP-----------FMN---RQYFP---GK---- 322 (509)
T ss_pred EEC--HHHHHHHHHHHHHHHHhhCccc----------------cccccc-----------ccc---hhcCC---Cc----
Confidence 999 7899999999999987654310 000100 000 00000 00
Q ss_pred cccccccCCCCCCCCCCCceeeeecCCCCCCCCCCcchHHHHHHHHhhcCCcCEEEEEEeeeeeeeccccccccHHHHHH
Q 009992 283 MFRETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSS 362 (520)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~ls~sP~~~~~~~r~~~~~all~~I~~Ak~~~~I~I~~~~y~P~~~~~~~~~~~~~i~~ 362 (520)
.. ..+ ......+.++|... .....++++++|++||+ +|+|++|||+|+ +.+.+
T Consensus 323 ----~~-~~~------~~~~q~~~sgp~~~----~~~i~~~~l~~I~~A~~--~I~I~tpYf~pd----------~~l~~ 375 (509)
T PRK12452 323 ----EI-SNA------EGAVQIVASGPSSD----DKSIRNTLLAVMGSAKK--SIWIATPYFIPD----------QETLT 375 (509)
T ss_pred ----cc-cCC------CeEEEEEeCCCCch----hHHHHHHHHHHHHHhhh--EEEEECCccCCC----------HHHHH
Confidence 00 001 11123455555321 12356899999999999 999999999997 57999
Q ss_pred HHHHHHHcCCCEEEEEeccccCCCcC----hHHHHHHhhhccccccccCCCCCCCceeEEEEEcCCCCCCCCcccCCCCC
Q 009992 363 AVSEVVFSKHANVKILVAYWAHFINN----TDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNT 438 (520)
Q Consensus 363 AL~~Aa~~RGV~VRILi~~~~~~~~~----~~~~l~sL~~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~~~ 438 (520)
||+.|| +|||+||||+|+... .+. ...++..|. +.||++|.+.
T Consensus 376 aL~~Aa-~rGV~Vrii~p~~~D-~~~~~~a~~~~~~~L~----------------~aGv~I~~y~--------------- 422 (509)
T PRK12452 376 LLRLSA-ISGIDVRILYPGKSD-SIISDQASQSYFTPLL----------------KAGASIYSYK--------------- 422 (509)
T ss_pred HHHHHH-HcCCEEEEEcCCCCC-hHHHHHHHHHHHHHHH----------------HcCCEEEEec---------------
Confidence 999999 899999999997432 221 122333333 2456666653
Q ss_pred CCCCCCcceeecceeEEec-CeEEEccCCCCcccccccCCeeeeecChhHHHHHHHHHHhhccCCCcccccccC
Q 009992 439 GNIYPGFTRVNHGKYAVSD-SRAHIGTSNLVWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWNSPYAFPVEELG 511 (520)
Q Consensus 439 ~~~~~~~~~~lHaK~~ViD-~~a~IGS~N~d~~sf~~n~e~~l~~~~~~~~~~l~~~F~~dw~s~ya~~l~~~~ 511 (520)
++++|+|++|+| ++++|||+|||.|||..|.|.++++.++++++++++.|++||..+..++++.+.
T Consensus 423 -------~~~lHaK~~ivD~~~a~vGS~Nld~RS~~~n~E~~~~i~~~~~~~~l~~~f~~d~~~s~~~~~~~~~ 489 (509)
T PRK12452 423 -------DGFMHAKIVLVDDKIATIGTANMDVRSFELNYEIISVLYESETVHDIKRDFEDDFKHSTEIKWNAFQ 489 (509)
T ss_pred -------CCCeeeeEEEECCCEEEEeCcccCHhHhhhhhhccEEEECHHHHHHHHHHHHHHHHhCeECCHHHHh
Confidence 158999999998 899999999999999999999999999999999999999999988777776554
No 5
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=2.6e-46 Score=404.45 Aligned_cols=320 Identities=18% Similarity=0.199 Sum_probs=239.5
Q ss_pred cccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEecC-C
Q 009992 56 IVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHL-G 134 (520)
Q Consensus 56 ~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d~-g 134 (520)
...+++++++.|++||++|+|++|+| .+ +..|++++++|.+|++|||+||+++|. |
T Consensus 124 g~~~~~~l~~~I~~Ak~~I~l~~yi~---~~--------------------d~~g~~i~~aL~~aa~rGV~VriL~D~~G 180 (483)
T PRK01642 124 GDETFQAIIRDIELARHYILMEFYIW---RP--------------------DGLGDQVAEALIAAAKRGVRVRLLYDSIG 180 (483)
T ss_pred HHHHHHHHHHHHHHhhcEEEEEEEEE---cc--------------------CCcHHHHHHHHHHHHHCCCEEEEEEECCC
Confidence 34688999999999999999996555 21 357899999999999999999999997 6
Q ss_pred CCCCcch-hHHHHHcCCCCeEEEEecccc------ccCCCceeeEEEEEcCcEEEecccCCCc-ccc------ccccccc
Q 009992 135 VYPDFTT-EASNLASGRKNVENVTLLLGD------WWGSGIVHAKVWISDCRDVYIGSANNDW-KSL------TQVKEVG 200 (520)
Q Consensus 135 ~~~~~~~-~~~~L~~~~~gv~v~~~~~~~------~~~~~~lH~K~~VvD~~~~~iGSaN~d~-~sl------~~~~E~g 200 (520)
+.....+ ..+.|.+ +|+++..+.+.. ..-++|+|+|++||||+++|+||+|+++ .++ ..|+|++
T Consensus 181 s~~~~~~~~~~~L~~--~Gi~v~~~~p~~~~~~~~~~~n~RnHrKi~VIDg~ia~~Gg~Ni~d~~y~~~~~~~~~w~D~~ 258 (483)
T PRK01642 181 SFAFFRSPYPEELRN--AGVEVVEFLKVNLGRVFRRRLDLRNHRKIVVIDGYIAYTGSMNVVDPEYFKQDPGVGQWRDTH 258 (483)
T ss_pred CCCCCcHHHHHHHHH--CCCEEEEecCCCcccccccccccccCceEEEEcCCEEEeCCcccCCHHHhCCCCCCCCcEEEE
Confidence 6433333 4566776 689888763211 1135799999999999999999999988 655 4578899
Q ss_pred EEEECChHHHHHHHHHHHHHHhcCCCCCCccccccchhhhhccccCCCCcccCCCCCccCCCCCCCccCCCcCCCCccCC
Q 009992 201 IYLVGCPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQANRTVPCWSHFLDPKGRCRSPLPPVLEVPHVEGYPILSD 280 (520)
Q Consensus 201 v~i~~~~~la~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~ 280 (520)
+.++| +.|.+++.+|..+|...++... .+.+|.. ..+
T Consensus 259 ~~i~G--p~v~~l~~~F~~dW~~~~~~~~----------------~~~~~~~---------~~~---------------- 295 (483)
T PRK01642 259 VRIEG--PVVTALQLIFAEDWEWETGERI----------------LPPPPDV---------LIM---------------- 295 (483)
T ss_pred EEEEc--HHHHHHHHHHHHHHHHHhCccc----------------CCCCccc---------ccC----------------
Confidence 99998 7899999999999987654320 0000000 000
Q ss_pred cccccccccCCCCCCCCCCCceeeeecCCCCCCCCCCcchHHHHHHHHhhcCCcCEEEEEEeeeeeeeccccccccHHHH
Q 009992 281 PYMFRETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSAL 360 (520)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~ls~sP~~~~~~~r~~~~~all~~I~~Ak~~~~I~I~~~~y~P~~~~~~~~~~~~~i 360 (520)
+...++ ......++++|... .....++++++|++||+ +|+|++|||+|+ +.|
T Consensus 296 ------~~~~~~------~~~~qi~~sgP~~~----~~~~~~~~~~~I~~A~~--~I~I~tpYfip~----------~~i 347 (483)
T PRK01642 296 ------PFEEAS------GHTVQVIASGPGDP----EETIHQFLLTAIYSARE--RLWITTPYFVPD----------EDL 347 (483)
T ss_pred ------CccCCC------CceEEEEeCCCCCh----hhHHHHHHHHHHHHhcc--EEEEEcCCcCCC----------HHH
Confidence 000001 01123444555321 12245789999999999 999999999997 589
Q ss_pred HHHHHHHHHcCCCEEEEEeccccCCCcC----hHHHHHHhhhccccccccCCCCCCCceeEEEEEcCCCCCCCCcccCCC
Q 009992 361 SSAVSEVVFSKHANVKILVAYWAHFINN----TDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGS 436 (520)
Q Consensus 361 ~~AL~~Aa~~RGV~VRILi~~~~~~~~~----~~~~l~sL~~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~ 436 (520)
.+||+.|| +|||+|||++|++.+. +. ...+++.|. +.+|++|.+.
T Consensus 348 ~~aL~~Aa-~rGV~Vril~p~~~d~-~~~~~~~~~~~~~L~----------------~~Gv~I~~y~------------- 396 (483)
T PRK01642 348 LAALKTAA-LRGVDVRIIIPSKNDS-LLVFWASRAFFTELL----------------EAGVKIYRYE------------- 396 (483)
T ss_pred HHHHHHHH-HcCCEEEEEeCCCCCc-HHHHHHHHHHHHHHH----------------HcCCEEEEeC-------------
Confidence 99999998 8999999999986432 21 123333332 2456777653
Q ss_pred CCCCCCCCcceeecceeEEec-CeEEEccCCCCcccccccCCeeeeecChhHHHHHHHHHHhhccCCCcccccccC
Q 009992 437 NTGNIYPGFTRVNHGKYAVSD-SRAHIGTSNLVWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWNSPYAFPVEELG 511 (520)
Q Consensus 437 ~~~~~~~~~~~~lHaK~~ViD-~~a~IGS~N~d~~sf~~n~e~~l~~~~~~~~~~l~~~F~~dw~s~ya~~l~~~~ 511 (520)
++++|+|+||+| ++++|||+|||.|||..|+|++++++|+++++++++.|++||..+...+++.+.
T Consensus 397 ---------~~~~HaK~~ivD~~~~~vGS~N~d~rS~~~N~E~~~~i~d~~~~~~l~~~f~~d~~~s~~i~~~~~~ 463 (483)
T PRK01642 397 ---------GGLLHTKSVLVDDELALVGTVNLDMRSFWLNFEITLVIDDTGFAADLAAMQEDYFARSRELDLEEWR 463 (483)
T ss_pred ---------CCceEeEEEEECCCEEEeeCCcCCHhHHhhhhcceEEEECHHHHHHHHHHHHHHHHhCeEcCHHHHh
Confidence 158999999998 899999999999999999999999999999999999999999988877776543
No 6
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=8.7e-46 Score=391.29 Aligned_cols=317 Identities=15% Similarity=0.113 Sum_probs=235.1
Q ss_pred cHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEecC-CCC
Q 009992 58 SSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHL-GVY 136 (520)
Q Consensus 58 ~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d~-g~~ 136 (520)
..|++++++|++||++|+|++|||. + +..|+.|+++|++|++|||+|||++|. |+.
T Consensus 18 e~~~~l~~~I~~Ak~~I~i~~yi~~---~--------------------d~~g~~l~~aL~~aa~rGV~Vril~D~~gs~ 74 (411)
T PRK11263 18 QYYPRVFEAIAAAQEEILLETFILF---E--------------------DKVGKQLHAALLAAAQRGVKVEVLVDGYGSP 74 (411)
T ss_pred HHHHHHHHHHHHhCCEEEEEEEEEe---c--------------------CchHHHHHHHHHHHHHCCCEEEEEEECCCCC
Confidence 5678999999999999999988882 1 356899999999999999999999997 553
Q ss_pred CCcchhHHHHHcCCCCeEEEEecccc-ccC-----CCceeeEEEEEcCcEEEecccCCCccccc-----ccccccEEEEC
Q 009992 137 PDFTTEASNLASGRKNVENVTLLLGD-WWG-----SGIVHAKVWISDCRDVYIGSANNDWKSLT-----QVKEVGIYLVG 205 (520)
Q Consensus 137 ~~~~~~~~~L~~~~~gv~v~~~~~~~-~~~-----~~~lH~K~~VvD~~~~~iGSaN~d~~sl~-----~~~E~gv~i~~ 205 (520)
.......+.|.. +||+++.+++.. +.+ .+++|+|++|||++++|+||+|+++..+. .|+|+++.++|
T Consensus 75 ~~~~~~~~~L~~--aGv~v~~~~p~~~~~~~~~~~~~R~HrKiiVIDg~~a~vGg~N~~~~~~~~~g~~~w~D~~v~i~G 152 (411)
T PRK11263 75 DLSDEFVNELTA--AGVRFRYFDPRPRLLGMRTNLFRRMHRKIVVIDGRIAFVGGINYSADHLSDYGPEAKQDYAVEVEG 152 (411)
T ss_pred CCCHHHHHHHHH--CCeEEEEeCCcccccccccccccCCcceEEEEcCCEEEEcCeEchHhhccccCCCCceEEEEEEEC
Confidence 223334566765 689998765431 111 24899999999999999999999875543 37999999999
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCCCccccccchhhhhccccCCCCcccCCCCCccCCCCCCCccCCCcCCCCccCCccccc
Q 009992 206 CPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQANRTVPCWSHFLDPKGRCRSPLPPVLEVPHVEGYPILSDPYMFR 285 (520)
Q Consensus 206 ~~~la~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~ 285 (520)
++|.+++..|..+|....... ..|+.. +.. +
T Consensus 153 --p~V~~l~~~f~~~w~~~~~~~------------------~~~~~~---------~~~----------------~---- 183 (411)
T PRK11263 153 --PVVADIHQFELEALPGQSAAR------------------RWWRRH---------HRA----------------E---- 183 (411)
T ss_pred --HHHHHHHHHHHHHHhhcccch------------------hhhccc---------ccC----------------c----
Confidence 799999999999997432100 001100 000 0
Q ss_pred ccccCCCCCCCCCCCceeeeecCCCCCCCCCCcchHHHHHHHHhhcCCcCEEEEEEeeeeeeeccccccccHHHHHHHHH
Q 009992 286 ETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVS 365 (520)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~ls~sP~~~~~~~r~~~~~all~~I~~Ak~~~~I~I~~~~y~P~~~~~~~~~~~~~i~~AL~ 365 (520)
....+| .....++++.|.. .+....+.++.+|++|++ +|+|++|||+|+ ..|.+||+
T Consensus 184 -~~~~~g------~~~~~~v~~~p~~----~~~~i~~~~~~~i~~A~~--~I~I~tpYf~p~----------~~l~~aL~ 240 (411)
T PRK11263 184 -ENRQPG------EAQALLVWRDNEE----HRDDIERHYLKALRQARR--EVIIANAYFFPG----------YRLLRALR 240 (411)
T ss_pred -ccCCCC------CeEEEEEECCCcc----hHHHHHHHHHHHHHHhce--EEEEEecCcCCC----------HHHHHHHH
Confidence 000011 1112345444432 223446789999999999 999999999997 57999999
Q ss_pred HHHHcCCCEEEEEeccccCCCcChH----HHHHHhhhccccccccCCCCCCCceeEEEEEcCCCCCCCCcccCCCCCCCC
Q 009992 366 EVVFSKHANVKILVAYWAHFINNTD----EYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNI 441 (520)
Q Consensus 366 ~Aa~~RGV~VRILi~~~~~~~~~~~----~~l~sL~~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~~~~~~ 441 (520)
.|+ +|||+||||+++.. +.+... .++..|. ..+|++|++.
T Consensus 241 ~Aa-~RGV~V~ii~~~~~-d~~~~~~a~~~~~~~Ll----------------~~Gv~I~~y~------------------ 284 (411)
T PRK11263 241 NAA-RRGVRVRLILQGEP-DMPIVRVGARLLYNYLL----------------KGGVQIYEYC------------------ 284 (411)
T ss_pred HHH-HCCCEEEEEeCCCC-CcHHHHHHHHHHHHHHH----------------HCCCEEEEec------------------
Confidence 998 89999999999853 222221 1222222 2457777753
Q ss_pred CCCcceeecceeEEec-CeEEEccCCCCcccccccCCeeeeecChhHHHHHHHHHHhhcc-CCCcccccccC
Q 009992 442 YPGFTRVNHGKYAVSD-SRAHIGTSNLVWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWN-SPYAFPVEELG 511 (520)
Q Consensus 442 ~~~~~~~lHaK~~ViD-~~a~IGS~N~d~~sf~~n~e~~l~~~~~~~~~~l~~~F~~dw~-s~ya~~l~~~~ 511 (520)
.+++|+|+||+| ++++|||+|||.+||..|.|+++++.|+++++++++.|+.++. .+..++++.+.
T Consensus 285 ----~~~lHaK~~viD~~~~~vGS~Nld~rS~~lN~E~~~~i~d~~~a~~l~~~~~~~~~~~s~~v~~~~~~ 352 (411)
T PRK11263 285 ----RRPLHGKVALMDDHWATVGSSNLDPLSLSLNLEANLIIRDRAFNQTLRDNLNGLIAADCQQVDETMLP 352 (411)
T ss_pred ----CCCceeEEEEECCCEEEEeCCcCCHHHhhhhhhcCEEEeCHHHHHHHHHHHHHHHHhhCEeCcHHHHh
Confidence 158999999998 7999999999999999999999999999999999999999996 66666666543
No 7
>PF13918 PLDc_3: PLD-like domain
Probab=100.00 E-value=7.4e-39 Score=296.94 Aligned_cols=175 Identities=27% Similarity=0.465 Sum_probs=155.0
Q ss_pred cccccccccEEEECChHHHHHHHHHHHHHHhcCCCCCCccccccchhhhhccccCCC-CcccCCCCCccCCCCCCCccCC
Q 009992 192 SLTQVKEVGIYLVGCPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQANRTVPC-WSHFLDPKGRCRSPLPPVLEVP 270 (520)
Q Consensus 192 sl~~~~E~gv~i~~~~~la~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~pl~~~~~~~ 270 (520)
||+|.||+||+++| +|+|+||.++|+.||.++.... +|. ||..+.+.++...|+..
T Consensus 1 SLtqvKELGv~~~N-scLA~DL~kiF~~Yw~lg~~~~-----------------iP~~Wp~~~~t~~n~~~pl~~----- 57 (177)
T PF13918_consen 1 SLTQVKELGVVVYN-SCLAQDLQKIFDTYWYLGSNSS-----------------IPSSWPSRYSTAYNRPNPLSL----- 57 (177)
T ss_pred CccceEeeeEEecC-cHHHHHHHHHHHHHHhhCCCCC-----------------CCCchhhhhhhcccCCCCeEE-----
Confidence 78999999999999 9999999999999999987543 554 99988888877666542
Q ss_pred CcCCCCccCCcccccccccCCCCCCCCCCCceeeeecCCCCCCCCCCcchHHHHHHHHhhcCCcCEEEEEEeeeeeeecc
Q 009992 271 HVEGYPILSDPYMFRETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTRATLRISTMDWLGQSQY 350 (520)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~sP~~~~~~~r~~~~~all~~I~~Ak~~~~I~I~~~~y~P~~~~ 350 (520)
+++ +....+|+++|||.+++.||+.|++|+++.|++|++ +|+|++|+|+|...+
T Consensus 58 ----------------~~n--------~~~~~vf~SsSPp~~~~~gRT~DldAIl~~I~~A~~--fI~IsVMdY~P~~~~ 111 (177)
T PF13918_consen 58 ----------------HLN--------GTKSGVFFSSSPPPFCPKGRTLDLDAILSVIDSAKK--FIYISVMDYLPTSRY 111 (177)
T ss_pred ----------------EeC--------CcceeEEecCCCcccCCCCCCcHHHHHHHHHHhHhh--eEEEEEeecCCeeec
Confidence 221 234578999999999999999999999999999999 999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHcCCCEEEEEeccccCCCcChHHHHHHhhhccccccccCCCCCCCceeEEEEEcCC
Q 009992 351 LKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPG 424 (520)
Q Consensus 351 ~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~~~~~~~~~~~~l~sL~~~~~l~~~~~~~~~~~~i~Vr~~~~p~ 424 (520)
.++.+|||.|++||++||++|||+||+||+.|+|++|.+..||+||+.++ . ++.+|+||+|.+|.
T Consensus 112 ~~~~~YWP~ID~ALR~AA~~R~V~VRlLIS~W~ht~p~~~~fL~SL~~l~---~------~~~~i~Vk~F~VP~ 176 (177)
T PF13918_consen 112 SKPNRYWPVIDDALRRAAIERGVKVRLLISCWKHTDPSMFPFLRSLQALN---V------GNCSIEVKIFIVPS 176 (177)
T ss_pred CCCCCcchhHHHHHHHHHHHcCCeEEEEEeecCCCChhHHHHHHHHHHhC---c------CCccEEEEEEeccC
Confidence 99999999999999999999999999999999999999999999999753 1 24579999999874
No 8
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=100.00 E-value=1.7e-35 Score=315.43 Aligned_cols=342 Identities=15% Similarity=0.077 Sum_probs=216.2
Q ss_pred ccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhh--CCCeEEEEecC-
Q 009992 57 VSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAAD--RNVRVRLLQHL- 133 (520)
Q Consensus 57 ~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~--rGV~VrIl~d~- 133 (520)
...+++++++|++||++|+|++||| .+ |..|++|++||.+|++ +||+|||++|.
T Consensus 34 ~~f~~~Ll~~I~~Ak~~I~l~~y~~---~~--------------------D~~g~~il~AL~~a~~~~~gv~VrvLvD~~ 90 (451)
T PRK09428 34 ADFRETLLEKIASAKKRIYIVALYL---ED--------------------DEAGREILDALYQAKQQNPELDIKVLVDWH 90 (451)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEe---cC--------------------CchHHHHHHHHHHHHhcCCCcEEEEEEEcc
Confidence 3578899999999999999999999 32 3678999999999854 89999999995
Q ss_pred -------CCCC--CcchhHHHHHcCCCCeEEEEecccc--ccCCCceeeEEEEEcCcEEEecccCCCcccccc----ccc
Q 009992 134 -------GVYP--DFTTEASNLASGRKNVENVTLLLGD--WWGSGIVHAKVWISDCRDVYIGSANNDWKSLTQ----VKE 198 (520)
Q Consensus 134 -------g~~~--~~~~~~~~L~~~~~gv~v~~~~~~~--~~~~~~lH~K~~VvD~~~~~iGSaN~d~~sl~~----~~E 198 (520)
|+.. ........|.+.++|+++..+..+. ....|++|+|++||||+++|+| +|+....+++ ..|
T Consensus 91 Ra~Rg~iG~~~~~~~~~~~~~l~~~~~gv~v~~f~~p~~~~e~~gr~HrKi~IiD~~v~ysG-aNi~d~Yl~~~~~~r~D 169 (451)
T PRK09428 91 RAQRGLIGAAASNTNADWYCEMAQEYPGVDIPVYGVPVNTREALGVLHLKGFIIDDTVLYSG-ASLNNVYLHQHDKYRYD 169 (451)
T ss_pred cccccccccCCCCcCHHHHHHHHHhCCCceEEEcCCccccchhhhhceeeEEEECCCEEEec-ccccHHHhcCCcccCcc
Confidence 3221 1123456676533468877553221 1235789999999999999998 8998777665 347
Q ss_pred ccEEEECChHHHHHHHHHHHHHHhcCCCCCCccccccchhhhhccccCCCCcccCCCCCccCC-CCCCCccCCCcCCCCc
Q 009992 199 VGIYLVGCPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQANRTVPCWSHFLDPKGRCRS-PLPPVLEVPHVEGYPI 277 (520)
Q Consensus 199 ~gv~i~~~~~la~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-pl~~~~~~~~~~~~~~ 277 (520)
..++|+| +.+.++...|..+|...++.... .+..|. |. ........+... .+.. ..| .
T Consensus 170 ry~~i~g--~~la~~~~~fi~~~~~~~~~v~~-----l~~~~~-----~~-~~~~~~~~~~~~~~l~~---~~~----~- 228 (451)
T PRK09428 170 RYHLIRN--AELADSMVNFIQQNLLNSPAVNR-----LDQPNR-----PK-TKEIKNDIRQFRQRLRD---AAY----Q- 228 (451)
T ss_pred eEEEEeC--chHHHHHHHHHHHHhhccCcccc-----cccccc-----cc-chhhHHHHHHHHHHHhh---hcc----C-
Confidence 7888999 55779999999999875532100 000000 00 000000000000 0000 000 0
Q ss_pred cCCcccccccccCCCCCCCCCCCceeeeecCCCCCCCCCCcchHHHHHHHHhhcCCcCEEEEEEeeeeeeeccccccccH
Q 009992 278 LSDPYMFRETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYW 357 (520)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~sP~~~~~~~r~~~~~all~~I~~Ak~~~~I~I~~~~y~P~~~~~~~~~~~ 357 (520)
.+-. .+ .....+....++ + .+....+.+..+|.+|++ +|+|+||||+|+
T Consensus 229 --------~~~~-~~-----~~~~~v~p~~g~-g----~~~~l~~~~~~li~~A~~--~i~I~TPYF~p~---------- 277 (451)
T PRK09428 229 --------FQGQ-AN-----NDELSVTPLVGL-G----KKNLLNKTIFHLMASAEQ--KLTICTPYFNLP---------- 277 (451)
T ss_pred --------cccc-cC-----CCCeEEeeeecc-C----CchHHHHHHHHHHhccCc--EEEEEeCCcCCC----------
Confidence 0000 00 001111111111 0 113456788999999999 999999999998
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeccccCCC-------cC----hHHHHHHhhhccccccccCCCCCCCceeEEEEEcCCCC
Q 009992 358 SALSSAVSEVVFSKHANVKILVAYWAHFI-------NN----TDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYN 426 (520)
Q Consensus 358 ~~i~~AL~~Aa~~RGV~VRILi~~~~~~~-------~~----~~~~l~sL~~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~ 426 (520)
+.+.+||+.|+ +|||+|+||+++...+| +. ...++..+. +..+.......-..+++.|++|+++.
T Consensus 278 ~~l~~~L~~a~-~rGv~V~Ii~~~~~andfy~~~d~~~~~~~~~py~ye~~-lr~f~~~~~~li~~G~l~v~i~~~~~-- 353 (451)
T PRK09428 278 AILVRNIIRLL-RRGKKVEIIVGDKTANDFYIPPDEPFKIIGALPYLYEIN-LRRFAKRLQYYIDNGQLNVRLWKDGD-- 353 (451)
T ss_pred HHHHHHHHHHH-hcCCcEEEEcCCcccccCcCCCccHHHHhhhhHHHHHHh-hhhhHHHhhhhhhcCcceEEEEecCC--
Confidence 68999999988 89999999999863221 11 111222110 00000000000012356699998642
Q ss_pred CCCCcccCCCCCCCCCCCcceeecceeEEec-CeEEEccCCCCcccccccCCeeeeecChhHHHHHHHHHHhhcc
Q 009992 427 LTGPAIQNGSNTGNIYPGFTRVNHGKYAVSD-SRAHIGTSNLVWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWN 500 (520)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~lHaK~~ViD-~~a~IGS~N~d~~sf~~n~e~~l~~~~~~~~~~l~~~F~~dw~ 500 (520)
.++|+|.|++| ++++|||+|||.|||..|.|+++++.|++ ++|++.|+++.+
T Consensus 354 --------------------~~~HaK~i~vD~~~~~iGS~Nld~RS~~ln~E~~l~i~d~~--~~l~~~~~~E~~ 406 (451)
T PRK09428 354 --------------------NSYHLKGIWVDDRWMLLTGNNLNPRAWRLDLENALLIHDPK--QELAEQREKELE 406 (451)
T ss_pred --------------------CcceEEEEEEeCCEEEEcCCCCChhHhhhcccceEEEECCh--HHHHHHHHHHHH
Confidence 58999999888 89999999999999999999999999874 555555555553
No 9
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=100.00 E-value=4e-35 Score=313.66 Aligned_cols=333 Identities=19% Similarity=0.211 Sum_probs=232.8
Q ss_pred cccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEecC-C
Q 009992 56 IVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHL-G 134 (520)
Q Consensus 56 ~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d~-g 134 (520)
....+.++++.|++|+++|+|+.||| .+ +..|+.++++|.++++|||+||+++|. |
T Consensus 68 ~~~~~~~~~~~i~~a~~~I~~~~~i~---~~--------------------d~~~~~i~~~l~~~a~~gv~vr~l~D~~~ 124 (438)
T COG1502 68 GADAFAALIELIEAAKKSIYLQYYIW---QD--------------------DELGREILDALIEAAKRGVEVRLLLDDIG 124 (438)
T ss_pred HHHHHHHHHHHHHHHhhEEEEEEEEE---eC--------------------ChhHHHHHHHHHHHHHcCCEEEEEEecCC
Confidence 34678899999999999999996667 21 256799999999999999999999997 5
Q ss_pred CCCCc-chhHHHHHcCCCCe-EEEEecccc------ccCCCceeeEEEEEcCcEEEecccCCCccccc------cccccc
Q 009992 135 VYPDF-TTEASNLASGRKNV-ENVTLLLGD------WWGSGIVHAKVWISDCRDVYIGSANNDWKSLT------QVKEVG 200 (520)
Q Consensus 135 ~~~~~-~~~~~~L~~~~~gv-~v~~~~~~~------~~~~~~lH~K~~VvD~~~~~iGSaN~d~~sl~------~~~E~g 200 (520)
+.... ......+.. +++ +++.+.... ...++++|+|++|+|++++|+||+|+...++. .+.|..
T Consensus 125 ~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~r~H~K~~viD~~i~~vGg~N~~d~y~~~~~~~~~~~D~~ 202 (438)
T COG1502 125 STRGLLKSLLALLKR--AGIEEVRLFNPASPRPLRFRRLNRRLHRKIVVIDGKVAFVGGANIGDEYFHKDKGLGYWRDLH 202 (438)
T ss_pred CcccccHHHHHHHhc--CCceEEEecCCcccccchhhhhhccccceEEEEcCCEEEecCcccchhhhccCcCcccceeee
Confidence 42221 223344443 566 555433221 12357999999999999999999999765544 457899
Q ss_pred EEEECChHHHHHHHHHHHHHHhcCCCCCCccccccchhhhhccccCCCCcccCCCCCccCCCCCCCccCCCcCCCCccCC
Q 009992 201 IYLVGCPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQANRTVPCWSHFLDPKGRCRSPLPPVLEVPHVEGYPILSD 280 (520)
Q Consensus 201 v~i~~~~~la~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~ 280 (520)
+.+.| +.+.++...|..+|.......... ..+.|+. .. ...
T Consensus 203 ~~~~g--~~v~~l~~~f~~~w~~~~~~~~~~-------------~~~~~~~-----------~~------------~~~- 243 (438)
T COG1502 203 VRITG--PAVADLARLFIQDWNLESGSSKPL-------------LALVRPP-----------LQ------------SLS- 243 (438)
T ss_pred EEEEC--HHHHHHHHHHHHHhhhccCcCccc-------------ccccccc-----------cc------------ccc-
Confidence 99998 789999999999999874322100 0000110 00 000
Q ss_pred cccccccccCCCCCCCCCCCceeeeecCCCCCCCCCCcchHHHHHHHHhhcCCcCEEEEEEeeeeeeeccccccccHHHH
Q 009992 281 PYMFRETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSAL 360 (520)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~ls~sP~~~~~~~r~~~~~all~~I~~Ak~~~~I~I~~~~y~P~~~~~~~~~~~~~i 360 (520)
..+. +. ......+..+|..............++.+|++|++ +|+|++|||+|. +.+
T Consensus 244 ----~~~~---~~-----~~~~~~~~~~P~~~~~~~~~~~~~~~~~~i~~A~~--~i~i~~pYf~~~----------~~~ 299 (438)
T COG1502 244 ----LLPV---GR-----GSTVQVLSSGPDKGLGSELIELNRLLLKAINSARE--SILIATPYFVPD----------REL 299 (438)
T ss_pred ----cccc---cc-----CcceEEEecCCccccchhhhhHHHHHHHHHHhhce--EEEEEcCCcCCC----------HHH
Confidence 0000 00 00012445555432221111123689999999999 999999999998 588
Q ss_pred HHHHHHHHHcCCCEEEEEeccccCCCcChHHHHHHhhhccccccccCCCCCCCceeEEEEEcCCCCCCCCcccCCCCCCC
Q 009992 361 SSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGN 440 (520)
Q Consensus 361 ~~AL~~Aa~~RGV~VRILi~~~~~~~~~~~~~l~sL~~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~~~~~ 440 (520)
.+||..|+ +|||+|+|+++.....+..... ......+..+ .+.++++|+++.
T Consensus 300 ~~al~~a~-~~Gv~V~ii~~~~~~~d~~~~~-~~~~~~~~~l----------~~~gv~i~~~~~---------------- 351 (438)
T COG1502 300 LAALKAAA-RRGVDVRIIIPSLGANDSAIVH-AAYRAYLKEL----------LEAGVKVYEYPG---------------- 351 (438)
T ss_pred HHHHHHHH-hcCCEEEEEeCCCCCCChHHHH-HHHHHHHHHH----------HHhCCEEEEecC----------------
Confidence 99999998 9999999999964444433211 1111111112 246788888642
Q ss_pred CCCCcce-eecceeEEec-CeEEEccCCCCcccccccCCeeeeecChhHHHHHHHHHHhhccCCCccccccc
Q 009992 441 IYPGFTR-VNHGKYAVSD-SRAHIGTSNLVWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWNSPYAFPVEEL 510 (520)
Q Consensus 441 ~~~~~~~-~lHaK~~ViD-~~a~IGS~N~d~~sf~~n~e~~l~~~~~~~~~~l~~~F~~dw~s~ya~~l~~~ 510 (520)
+ ++|+|+||+| ++++|||+|||.||+..|.|++++++|++++.+++..|+.+|..+.....+.+
T Consensus 352 ------g~~lH~K~~iiD~~~~~vGS~N~~~rS~~lN~E~~~~i~d~~~~~~~~~~~~~~~~~s~~~~~~~~ 417 (438)
T COG1502 352 ------GAFLHSKVMIIDDRTVLVGSANLDPRSLRLNFEVGLVIEDPELALKLRREFEADLARSKRLTLEDW 417 (438)
T ss_pred ------CCcceeeEEEEcCCEEEEeCCcCCHhHHHHhhhheeEEeCHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3 7999999998 88999999999999999999999999999999999999999977666654433
No 10
>PRK05443 polyphosphate kinase; Provisional
Probab=99.96 E-value=2.5e-28 Score=270.87 Aligned_cols=273 Identities=15% Similarity=0.096 Sum_probs=201.2
Q ss_pred HHHHHHHHHHhccc-----EEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEecC
Q 009992 59 SGNVLKWLAGNSTK-----RLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHL 133 (520)
Q Consensus 59 t~~~~~~lI~~Ak~-----sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d~ 133 (520)
+|+.++++|++|.+ +|.|..|.+ . .+..|++||++||+|||+|+|+++.
T Consensus 349 SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~---~-----------------------~~s~iv~aL~~Aa~~Gk~V~vlve~ 402 (691)
T PRK05443 349 SFDPVVEFLRQAAADPDVLAIKQTLYRT---S-----------------------KDSPIVDALIEAAENGKQVTVLVEL 402 (691)
T ss_pred CchHHHHHHHHhccCCCeeEEEEEEEEe---c-----------------------CCHHHHHHHHHHHHcCCEEEEEEcc
Confidence 45778899999999 899995555 1 1378999999999999999999995
Q ss_pred CCC---CCcchhHHHHHcCCCCeEEEEeccccccCCCceeeEEEEEcCc-------EEEecccCCCcccccccccccEEE
Q 009992 134 GVY---PDFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWISDCR-------DVYIGSANNDWKSLTQVKEVGIYL 203 (520)
Q Consensus 134 g~~---~~~~~~~~~L~~~~~gv~v~~~~~~~~~~~~~lH~K~~VvD~~-------~~~iGSaN~d~~sl~~~~E~gv~i 203 (520)
... .....+.+.|.+ +||+|.. .+.++..|+|+++||++ +++|||.|++.+|+..+.|+++.+
T Consensus 403 karfde~~n~~~~~~L~~--aGv~V~y-----~~~~~k~HaK~~lid~~e~~~~~~~~~iGTgN~n~~s~~~y~D~~l~t 475 (691)
T PRK05443 403 KARFDEEANIRWARRLEE--AGVHVVY-----GVVGLKTHAKLALVVRREGGGLRRYVHLGTGNYNPKTARLYTDLSLLT 475 (691)
T ss_pred CccccHHHHHHHHHHHHH--cCCEEEE-----ccCCccceeEEEEEEeecCCceeEEEEEcCCCCCcchhhhccceeEEE
Confidence 221 112234567776 7999853 13467899999999999 999999999999999999999999
Q ss_pred ECChHHHHHHHHHHHHHHhcCCCCCCccccccchhhhhccccCCCCcccCCCCCccCCCCCCCccCCCcCCCCccCCccc
Q 009992 204 VGCPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQANRTVPCWSHFLDPKGRCRSPLPPVLEVPHVEGYPILSDPYM 283 (520)
Q Consensus 204 ~~~~~la~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~ 283 (520)
.+ +++++++.++|..+|..+.... |.
T Consensus 476 ~d-~~i~~d~~~~F~~l~~~~~~~~--------------------~~--------------------------------- 501 (691)
T PRK05443 476 AD-PEIGEDVTRLFNYLTGYSRPVK--------------------LR--------------------------------- 501 (691)
T ss_pred eC-hHHHHHHHHHHHHHhCcCcccc--------------------cc---------------------------------
Confidence 88 8999999999999976432110 00
Q ss_pred ccccccCCCCCCCCCCCceeeeecCCCCCCCCCCcchHHHHHHHHhhcCCc--CEEEEEEeeeeeeeccccccccHHHHH
Q 009992 284 FRETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTR--ATLRISTMDWLGQSQYLKQTVYWSALS 361 (520)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~ls~sP~~~~~~~r~~~~~all~~I~~Ak~~--~~I~I~~~~y~P~~~~~~~~~~~~~i~ 361 (520)
.+-.||.. .+....+.+...|..||++ -+|+|.++| +|+ +.|.
T Consensus 502 --------------------~l~~sP~~----~~~~l~~~i~~ei~~Ak~G~~a~I~ik~n~-l~d----------~~ii 546 (691)
T PRK05443 502 --------------------KLLVSPFT----LRERLLELIDREIANARAGKPARIIAKMNS-LVD----------PQII 546 (691)
T ss_pred --------------------EEeecCcc----HHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCC----------HHHH
Confidence 01113422 1233456677788888752 269999877 776 6899
Q ss_pred HHHHHHHHcCCCEEEEEeccccC--------C-CcChHHHHHHhhhccccccccCCCCCCCceeEEEEEcCCCCCCCCcc
Q 009992 362 SAVSEVVFSKHANVKILVAYWAH--------F-INNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAI 432 (520)
Q Consensus 362 ~AL~~Aa~~RGV~VRILi~~~~~--------~-~~~~~~~l~sL~~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~ 432 (520)
+||.+|+ +|||+|||+|-+..+ + ......++..+.. ++|+|.+..
T Consensus 547 ~aL~~As-~~GV~V~liVRGiC~l~pgipg~sd~i~v~s~v~r~Le-----------------h~rIy~f~~-------- 600 (691)
T PRK05443 547 DALYEAS-QAGVKIDLIVRGICCLRPGVPGLSENIRVRSIVGRFLE-----------------HSRIYYFGN-------- 600 (691)
T ss_pred HHHHHHH-HCCCeEEEEEecccccCCCCCCCCCCEEEHHHHHHHHh-----------------cCEEEEEeC--------
Confidence 9999999 999999999933211 1 1111122222210 134443310
Q ss_pred cCCCCCCCCCCCcceeecceeEEecCeEEEccCCCCcccccccCCeeeeecChhHHHHHHHHHHhhccC
Q 009992 433 QNGSNTGNIYPGFTRVNHGKYAVSDSRAHIGTSNLVWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWNS 501 (520)
Q Consensus 433 ~~~~~~~~~~~~~~~~lHaK~~ViD~~a~IGS~N~d~~sf~~n~e~~l~~~~~~~~~~l~~~F~~dw~s 501 (520)
+ .|..++|||+||+.|||..|.|+.+.++|+.+++++.++|+.+|..
T Consensus 601 --------------g--------d~~~~~iGSAn~d~Rsl~~r~Ev~~~i~d~~~~~~l~~~~~~~l~d 647 (691)
T PRK05443 601 --------------G--------GDEEVYISSADWMPRNLDRRVEVLFPILDPRLKQRLLEILEIQLAD 647 (691)
T ss_pred --------------C--------CCcEEEEECCCCCcccccceEEEeEEEeCHHHHHHHHHHHHHHHhh
Confidence 1 3379999999999999999999999999999999999999999853
No 11
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.94 E-value=6.8e-25 Score=242.29 Aligned_cols=277 Identities=15% Similarity=0.118 Sum_probs=200.0
Q ss_pred HHHHHHHHHHhccc-----EEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEecC
Q 009992 59 SGNVLKWLAGNSTK-----RLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHL 133 (520)
Q Consensus 59 t~~~~~~lI~~Ak~-----sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d~ 133 (520)
+++.++++|++|.+ +|.|. .|.+ . .+..|+++|++||++|++|+++++-
T Consensus 340 Sf~~v~~~i~~Aa~DP~V~~Ik~t-lYr~--~-----------------------~~s~ii~aL~~Aa~~Gk~V~v~veL 393 (672)
T TIGR03705 340 SFDPVVEFLRQAAEDPDVLAIKQT-LYRT--S-----------------------KDSPIIDALIEAAENGKEVTVVVEL 393 (672)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEE-EEEe--c-----------------------CCcHHHHHHHHHHHcCCEEEEEEEe
Confidence 45788899999998 89999 5552 1 1378999999999999999999993
Q ss_pred ---CCCCCcchhHHHHHcCCCCeEEEEeccccccCCCceeeEEEEEcCc-------EEEecccCCCcccccccccccEEE
Q 009992 134 ---GVYPDFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWISDCR-------DVYIGSANNDWKSLTQVKEVGIYL 203 (520)
Q Consensus 134 ---g~~~~~~~~~~~L~~~~~gv~v~~~~~~~~~~~~~lH~K~~VvD~~-------~~~iGSaN~d~~sl~~~~E~gv~i 203 (520)
.....+-.+.+.|.+ +|++|.. ...+...|+|+++||++ .+++|+.|++......+.|.++..
T Consensus 394 kArfde~~ni~wa~~le~--aG~~viy-----g~~~~k~H~K~~li~r~~~~~~~~y~~igTgN~n~~ta~~y~D~~l~t 466 (672)
T TIGR03705 394 KARFDEEANIRWARRLEE--AGVHVVY-----GVVGLKTHAKLALVVRREGGELRRYVHLGTGNYHPKTARLYTDLSLFT 466 (672)
T ss_pred hhhccchhhHHHHHHHHH--cCCEEEE-----cCCCeeeeeEEEEEEEeeCCceEEEEEecCCCCCCcccccccceeEEE
Confidence 111223335567776 7898874 12356899999999974 589999999988878889999887
Q ss_pred ECChHHHHHHHHHHHHHHhcCCCCCCccccccchhhhhccccCCCCcccCCCCCccCCCCCCCccCCCcCCCCccCCccc
Q 009992 204 VGCPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQANRTVPCWSHFLDPKGRCRSPLPPVLEVPHVEGYPILSDPYM 283 (520)
Q Consensus 204 ~~~~~la~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~ 283 (520)
.+ +.+++|+.++|...|....... |.
T Consensus 467 ~~-~~i~~d~~~~F~~l~~~~~~~~--------------------~~--------------------------------- 492 (672)
T TIGR03705 467 AD-PEIGRDVARVFNYLTGYSRPPK--------------------FK--------------------------------- 492 (672)
T ss_pred eC-hHHHHHHHHHHHHhhCCCcchh--------------------hH---------------------------------
Confidence 66 7899999999999886322110 00
Q ss_pred ccccccCCCCCCCCCCCceeeeecCCCCCCCCCCcchHHHHHHHHhhcCCc--CEEEEEEeeeeeeeccccccccHHHHH
Q 009992 284 FRETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTR--ATLRISTMDWLGQSQYLKQTVYWSALS 361 (520)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~ls~sP~~~~~~~r~~~~~all~~I~~Ak~~--~~I~I~~~~y~P~~~~~~~~~~~~~i~ 361 (520)
.+..+|.. .+....+.+...|..||++ .+|+|.++| +|+ +.|.
T Consensus 493 --------------------~l~~~P~~----~~~~~~~~i~~ei~~Ak~g~~~~I~ik~n~-l~D----------~~ii 537 (672)
T TIGR03705 493 --------------------HLLVSPFT----LRKRLLELIDREIENARAGKPARIIAKMNS-LVD----------PDLI 537 (672)
T ss_pred --------------------HHHhCcch----HHHHHHHHHHHHHHHHHcCCCCEEEEEcCC-CCC----------HHHH
Confidence 01113321 1222345666677777742 279999887 776 6899
Q ss_pred HHHHHHHHcCCCEEEEEeccccCCCcChHHHHHHhhhccccccccCCCCCCCceeEEEEEcCCCCCCCCcccCCCCCCCC
Q 009992 362 SAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNI 441 (520)
Q Consensus 362 ~AL~~Aa~~RGV~VRILi~~~~~~~~~~~~~l~sL~~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~~~~~~ 441 (520)
+||..|+ +|||+||++|-+-.+-.|.. ..-..++.|+-+.
T Consensus 538 ~aL~~As-~aGV~V~LivRGiCcL~pgi-------------------pg~sd~i~v~siv-------------------- 577 (672)
T TIGR03705 538 DALYEAS-QAGVKIDLIVRGICCLRPGV-------------------PGLSENIRVRSIV-------------------- 577 (672)
T ss_pred HHHHHHH-HCCCeEEEEEecccccCCCC-------------------CCCCCCEEEEEEh--------------------
Confidence 9999999 99999999995532212210 0001234443221
Q ss_pred CCCcceee-cceeEEe----cCeEEEccCCCCcccccccCCeeeeecChhHHHHHHH-HHHhhccC
Q 009992 442 YPGFTRVN-HGKYAVS----DSRAHIGTSNLVWDYFYTTAGVSFGTYNPAIVSQLQE-IFDADWNS 501 (520)
Q Consensus 442 ~~~~~~~l-HaK~~Vi----D~~a~IGS~N~d~~sf~~n~e~~l~~~~~~~~~~l~~-~F~~dw~s 501 (520)
.+++ |+|+... |+.++|||+||+.|||..|.|+.+.+.|+.+++++.+ +++-.|..
T Consensus 578 ----~r~Leh~rIy~f~~~~d~~~~igSAn~m~Rnl~~r~E~~~~i~d~~~~~~l~~~il~~~l~D 639 (672)
T TIGR03705 578 ----GRFLEHSRIYYFGNGGEEKVYISSADWMTRNLDRRVEVLFPIEDPTLKQRVLDEILEAYLAD 639 (672)
T ss_pred ----hHhhCcCEEEEEeCCCCcEEEEECCCCCCCcccceEEEEEEEcCHHHHHHHHHHHHHHhCcc
Confidence 1334 7777654 3799999999999999999999999999999999988 99988853
No 12
>PLN02866 phospholipase D
Probab=99.89 E-value=6.9e-21 Score=213.97 Aligned_cols=155 Identities=19% Similarity=0.190 Sum_probs=107.3
Q ss_pred ccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccc-cCCCCCHHHHHHHHHHhhCCCeEEEE-ecCC
Q 009992 57 VSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKR-FGAQEGFDVYKSIENAADRNVRVRLL-QHLG 134 (520)
Q Consensus 57 ~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~-~~~~~g~~i~~aL~~aa~rGV~VrIl-~d~g 134 (520)
...|.++.++|++||++|+|. .|| + .+.. | +-+ ..+..+.+|.++|.+||++||+|||| .|..
T Consensus 343 ~dyF~AL~eAIe~AKesI~I~-~Ww-l-sPEi------Y------L~Rp~~D~~g~RL~~lL~rKAkrGVkVrVLLyD~v 407 (1068)
T PLN02866 343 HAAFEAIASAIENAKSEIFIT-GWW-L-CPEL------Y------LRRPFHDHESSRLDSLLEAKAKQGVQIYILLYKEV 407 (1068)
T ss_pred HHHHHHHHHHHHhcccEEEEE-Ecc-C-CceE------E------EEecCCCchHHHHHHHHHHHHHCCCEEEEEEECcc
Confidence 467899999999999999995 222 1 0000 0 000 01356899999999999999999997 5642
Q ss_pred CC--CCcchh-HHHHHcCCCCeEEEEeccc--cccCCCceeeEEEEEcCcEEEecccCC---------------------
Q 009992 135 VY--PDFTTE-ASNLASGRKNVENVTLLLG--DWWGSGIVHAKVWISDCRDVYIGSANN--------------------- 188 (520)
Q Consensus 135 ~~--~~~~~~-~~~L~~~~~gv~v~~~~~~--~~~~~~~lH~K~~VvD~~~~~iGSaN~--------------------- 188 (520)
.. ...... .+.|....+||++..++.. ....+.+.|+|++|||++++|+||.|+
T Consensus 408 g~al~~~S~~~k~~L~~lh~gI~V~r~P~~~~~~~ln~RhHRKIVVIDg~IAFvGGiNLc~GRWDT~~H~l~D~~~~~wP 487 (1068)
T PLN02866 408 ALALKINSVYSKRRLLGIHENVKVLRYPDHFSSGVYLWSHHEKLVIVDYQICFIGGLDLCFGRYDTPEHRVGDCPPVIWP 487 (1068)
T ss_pred ccccccCchhhHHHHHHhCCCeEEEecCcccccCcccccCCCCeEEECCCEEEecCcccCCCccCCcccccccccccccC
Confidence 21 111111 2334433479998655421 101235899999999999999999999
Q ss_pred --Ccc--------------------cc---cccccccEEEECChHHHHHHHHHHHHHHhcCCCCC
Q 009992 189 --DWK--------------------SL---TQVKEVGIYLVGCPTIAKKVEVYFENLWTLSSLNS 228 (520)
Q Consensus 189 --d~~--------------------sl---~~~~E~gv~i~~~~~la~~l~~~F~~~W~~~~~~~ 228 (520)
|+. .- ..|.|+++.+.| +.|.+|.+.|.++|+..+...
T Consensus 488 GkDY~Npr~~d~~~~~~~~~d~ldR~~~pRmPWHDV~~~V~G--pAardLa~hFvqRWN~at~~k 550 (1068)
T PLN02866 488 GKDYYNPRESEPNSWEDTMKDELDRRKYPRMPWHDVHCALWG--PPCRDVARHFVQRWNYAKRNK 550 (1068)
T ss_pred cccccccccccccccccccccccccccCCCCCceEEEEEEEC--HHHHHHHHHHHHHHHHHhccc
Confidence 111 00 258999999999 899999999999999877654
No 13
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.88 E-value=2.8e-22 Score=218.03 Aligned_cols=150 Identities=21% Similarity=0.175 Sum_probs=125.7
Q ss_pred CCeEEEEEeccCCCCCCCCCCCCcccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHH
Q 009992 33 TKCKAWLVQSIPTDMPHLPRVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFD 112 (520)
Q Consensus 33 ~~c~~~lv~s~P~~~~~~~~~~~~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~ 112 (520)
..+.++++.+.|... ...++++++++|++||++|+|++|||. +++.
T Consensus 327 ~~~~~q~~~sgp~~~--------~~~i~~~~l~~I~~A~~~I~I~tpYf~--------------------------pd~~ 372 (509)
T PRK12452 327 AEGAVQIVASGPSSD--------DKSIRNTLLAVMGSAKKSIWIATPYFI--------------------------PDQE 372 (509)
T ss_pred CCeEEEEEeCCCCch--------hHHHHHHHHHHHHHhhhEEEEECCccC--------------------------CCHH
Confidence 456789999999753 246889999999999999999999992 3478
Q ss_pred HHHHHHHHhhCCCeEEEEecCCCCCC-----cchhHHHHHcCCCCeEEEEeccccccCCCceeeEEEEEcCcEEEecccC
Q 009992 113 VYKSIENAADRNVRVRLLQHLGVYPD-----FTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSAN 187 (520)
Q Consensus 113 i~~aL~~aa~rGV~VrIl~d~g~~~~-----~~~~~~~L~~~~~gv~v~~~~~~~~~~~~~lH~K~~VvD~~~~~iGSaN 187 (520)
++++|+.||+|||+|||++|..+... .....+.|.+ +||+++.+ ..+++|+|++|||++++++||+|
T Consensus 373 l~~aL~~Aa~rGV~Vrii~p~~~D~~~~~~a~~~~~~~L~~--aGv~I~~y------~~~~lHaK~~ivD~~~a~vGS~N 444 (509)
T PRK12452 373 TLTLLRLSAISGIDVRILYPGKSDSIISDQASQSYFTPLLK--AGASIYSY------KDGFMHAKIVLVDDKIATIGTAN 444 (509)
T ss_pred HHHHHHHHHHcCCEEEEEcCCCCChHHHHHHHHHHHHHHHH--cCCEEEEe------cCCCeeeeEEEECCCEEEEeCcc
Confidence 99999999999999999998622110 0112345655 79999853 46899999999999999999999
Q ss_pred CCcccccccccccEEEECChHHHHHHHHHHHHHHhcCC
Q 009992 188 NDWKSLTQVKEVGIYLVGCPTIAKKVEVYFENLWTLSS 225 (520)
Q Consensus 188 ~d~~sl~~~~E~gv~i~~~~~la~~l~~~F~~~W~~~~ 225 (520)
||+||+..|.|.++++++ +++++++++.|+.+|..+.
T Consensus 445 ld~RS~~~n~E~~~~i~~-~~~~~~l~~~f~~d~~~s~ 481 (509)
T PRK12452 445 MDVRSFELNYEIISVLYE-SETVHDIKRDFEDDFKHST 481 (509)
T ss_pred cCHhHhhhhhhccEEEEC-HHHHHHHHHHHHHHHHhCe
Confidence 999999999999999998 8899999999999999765
No 14
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=99.86 E-value=2e-21 Score=210.66 Aligned_cols=149 Identities=19% Similarity=0.177 Sum_probs=124.1
Q ss_pred CeEEEEEeccCCCCCCCCCCCCcccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHH
Q 009992 34 KCKAWLVQSIPTDMPHLPRVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDV 113 (520)
Q Consensus 34 ~c~~~lv~s~P~~~~~~~~~~~~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i 113 (520)
++.++++.+.|... .....+.++++|++||++|+|++|||. +++.+
T Consensus 302 ~~~~qi~~sgP~~~--------~~~~~~~~~~~I~~A~~~I~I~tpYfi--------------------------p~~~i 347 (483)
T PRK01642 302 GHTVQVIASGPGDP--------EETIHQFLLTAIYSARERLWITTPYFV--------------------------PDEDL 347 (483)
T ss_pred CceEEEEeCCCCCh--------hhHHHHHHHHHHHHhccEEEEEcCCcC--------------------------CCHHH
Confidence 56788999988753 135778999999999999999999992 34789
Q ss_pred HHHHHHHhhCCCeEEEEecCCCCCCc-----chhHHHHHcCCCCeEEEEeccccccCCCceeeEEEEEcCcEEEecccCC
Q 009992 114 YKSIENAADRNVRVRLLQHLGVYPDF-----TTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANN 188 (520)
Q Consensus 114 ~~aL~~aa~rGV~VrIl~d~g~~~~~-----~~~~~~L~~~~~gv~v~~~~~~~~~~~~~lH~K~~VvD~~~~~iGSaN~ 188 (520)
+++|..|++|||+|||+++..+.... ....++|.. +||+++.+ ..+++|+|++|||++++++||+||
T Consensus 348 ~~aL~~Aa~rGV~Vril~p~~~d~~~~~~~~~~~~~~L~~--~Gv~I~~y------~~~~~HaK~~ivD~~~~~vGS~N~ 419 (483)
T PRK01642 348 LAALKTAALRGVDVRIIIPSKNDSLLVFWASRAFFTELLE--AGVKIYRY------EGGLLHTKSVLVDDELALVGTVNL 419 (483)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCCcHHHHHHHHHHHHHHHH--cCCEEEEe------CCCceEeEEEEECCCEEEeeCCcC
Confidence 99999999999999999986221100 011345554 68998853 468999999999999999999999
Q ss_pred CcccccccccccEEEECChHHHHHHHHHHHHHHhcCC
Q 009992 189 DWKSLTQVKEVGIYLVGCPTIAKKVEVYFENLWTLSS 225 (520)
Q Consensus 189 d~~sl~~~~E~gv~i~~~~~la~~l~~~F~~~W~~~~ 225 (520)
|.||+..|.|+++++++ +.+++++.+.|++||..+.
T Consensus 420 d~rS~~~N~E~~~~i~d-~~~~~~l~~~f~~d~~~s~ 455 (483)
T PRK01642 420 DMRSFWLNFEITLVIDD-TGFAADLAAMQEDYFARSR 455 (483)
T ss_pred CHhHHhhhhcceEEEEC-HHHHHHHHHHHHHHHHhCe
Confidence 99999999999999998 8999999999999998765
No 15
>PRK13912 nuclease NucT; Provisional
Probab=99.86 E-value=5.8e-21 Score=180.68 Aligned_cols=139 Identities=17% Similarity=0.195 Sum_probs=106.3
Q ss_pred chHHHHHHHHhhcCCcCEEEEEEeeeeeeeccccccccHHHHHHHHHHHHHcCCCEEEEEeccccCCCc--ChHHHHHHh
Q 009992 319 ADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFIN--NTDEYLKSL 396 (520)
Q Consensus 319 ~~~~all~~I~~Ak~~~~I~I~~~~y~P~~~~~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~~~~~~~--~~~~~l~sL 396 (520)
...+.++++|++|++ +|+|+ +|+++. +.|.+||.+|+ +|||+||||++.+..... ....++..+
T Consensus 33 ~~~~~l~~~I~~Ak~--sI~i~-~Y~~~~----------~~i~~aL~~Aa-~RGV~VrIlld~~~~~~~~~~~~~~l~~~ 98 (177)
T PRK13912 33 DALNKLVSLISNARS--SIKIA-IYSFTH----------KDIAKALKSAA-KRGVKISIIYDYESNHNNDQSTIGYLDKY 98 (177)
T ss_pred HHHHHHHHHHHhccc--EEEEE-EEEEch----------HHHHHHHHHHH-HCCCEEEEEEeCccccCcchhHHHHHHhC
Confidence 346789999999999 99998 466654 58999999998 999999999998743221 111233322
Q ss_pred hhccccccccCCCCCCCceeEEEEEcCCCCCCCCcccCCCCCCCCCCCcceeecceeEEec-CeEEEccCCCCccccccc
Q 009992 397 LYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSD-SRAHIGTSNLVWDYFYTT 475 (520)
Q Consensus 397 ~~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lHaK~~ViD-~~a~IGS~N~d~~sf~~n 475 (520)
.+++++.+.-+.. ....+.+++|+|+||+| +++++||+||+.+||..|
T Consensus 99 ----------------~~~~~~~~~~~~~---------------~~~~~~~~~H~K~~viD~~~~~iGS~N~t~~s~~~N 147 (177)
T PRK13912 99 ----------------PNIKVCLLKGLKA---------------KNGKYYGIMHQKVAIIDDKIVVLGSANWSKNAFENN 147 (177)
T ss_pred ----------------CCceEEEecCccc---------------cCcccccccceeEEEEcCCEEEEeCCCCChhHhccC
Confidence 2355555431110 00112368999999998 899999999999999999
Q ss_pred CCeeeeecChhHHHHHHHHHHhhccCC
Q 009992 476 AGVSFGTYNPAIVSQLQEIFDADWNSP 502 (520)
Q Consensus 476 ~e~~l~~~~~~~~~~l~~~F~~dw~s~ 502 (520)
.|.++++.|++++++++++|++.|.++
T Consensus 148 ~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 148 YEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred CceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999764
No 16
>PRK13912 nuclease NucT; Provisional
Probab=99.86 E-value=1.1e-20 Score=178.89 Aligned_cols=139 Identities=22% Similarity=0.183 Sum_probs=107.4
Q ss_pred cHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEecCC-CC
Q 009992 58 SSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHLG-VY 136 (520)
Q Consensus 58 ~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d~g-~~ 136 (520)
..++.++++|++|+++|+|++|+++ ...|+++|.+|++|||+|||++|.. ..
T Consensus 33 ~~~~~l~~~I~~Ak~sI~i~~Y~~~---------------------------~~~i~~aL~~Aa~RGV~VrIlld~~~~~ 85 (177)
T PRK13912 33 DALNKLVSLISNARSSIKIAIYSFT---------------------------HKDIAKALKSAAKRGVKISIIYDYESNH 85 (177)
T ss_pred HHHHHHHHHHHhcccEEEEEEEEEc---------------------------hHHHHHHHHHHHHCCCEEEEEEeCcccc
Confidence 4567899999999999999965551 2689999999999999999999962 21
Q ss_pred CCcchhHHHHHcCCCCeEEEEecccc---ccCCCceeeEEEEEcCcEEEecccCCCcccccccccccEEEECChHHHHHH
Q 009992 137 PDFTTEASNLASGRKNVENVTLLLGD---WWGSGIVHAKVWISDCRDVYIGSANNDWKSLTQVKEVGIYLVGCPTIAKKV 213 (520)
Q Consensus 137 ~~~~~~~~~L~~~~~gv~v~~~~~~~---~~~~~~lH~K~~VvD~~~~~iGSaN~d~~sl~~~~E~gv~i~~~~~la~~l 213 (520)
.........+.. ..++++....... ....+++|+|++|||++.+++||+||+++|+..|.|.++++.+ |++++++
T Consensus 86 ~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~H~K~~viD~~~~~iGS~N~t~~s~~~N~E~~lii~d-~~~~~~~ 163 (177)
T PRK13912 86 NNDQSTIGYLDK-YPNIKVCLLKGLKAKNGKYYGIMHQKVAIIDDKIVVLGSANWSKNAFENNYEVLLITDD-TETILKA 163 (177)
T ss_pred CcchhHHHHHHh-CCCceEEEecCccccCcccccccceeEEEEcCCEEEEeCCCCChhHhccCCceEEEECC-HHHHHHH
Confidence 111111223332 2456655432111 1134689999999999999999999999999999999999977 9999999
Q ss_pred HHHHHHHHhcCC
Q 009992 214 EVYFENLWTLSS 225 (520)
Q Consensus 214 ~~~F~~~W~~~~ 225 (520)
.+.|+.+|..+.
T Consensus 164 ~~~F~~~~~~s~ 175 (177)
T PRK13912 164 KEYFQKMLGSCV 175 (177)
T ss_pred HHHHHHHHHhcc
Confidence 999999998654
No 17
>PRK11263 cardiolipin synthase 2; Provisional
Probab=99.84 E-value=2.2e-20 Score=198.11 Aligned_cols=149 Identities=19% Similarity=0.152 Sum_probs=122.0
Q ss_pred CeEEEEEeccCCCCCCCCCCCCcccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHH
Q 009992 34 KCKAWLVQSIPTDMPHLPRVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDV 113 (520)
Q Consensus 34 ~c~~~lv~s~P~~~~~~~~~~~~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i 113 (520)
++.+++|.+.|... ...+.+.++++|.+||++|+|+++||. ++..|
T Consensus 190 ~~~~~~v~~~p~~~--------~~~i~~~~~~~i~~A~~~I~I~tpYf~--------------------------p~~~l 235 (411)
T PRK11263 190 EAQALLVWRDNEEH--------RDDIERHYLKALRQARREVIIANAYFF--------------------------PGYRL 235 (411)
T ss_pred CeEEEEEECCCcch--------HHHHHHHHHHHHHHhceEEEEEecCcC--------------------------CCHHH
Confidence 45788888887642 125677899999999999999999992 35889
Q ss_pred HHHHHHHhhCCCeEEEEecCCCCCCcc-----hhHHHHHcCCCCeEEEEeccccccCCCceeeEEEEEcCcEEEecccCC
Q 009992 114 YKSIENAADRNVRVRLLQHLGVYPDFT-----TEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANN 188 (520)
Q Consensus 114 ~~aL~~aa~rGV~VrIl~d~g~~~~~~-----~~~~~L~~~~~gv~v~~~~~~~~~~~~~lH~K~~VvD~~~~~iGSaN~ 188 (520)
+++|..|++|||+|+|++++.+..... .....|.. +||+++.+ ..+++|+|++|||+++++|||+||
T Consensus 236 ~~aL~~Aa~RGV~V~ii~~~~~d~~~~~~a~~~~~~~Ll~--~Gv~I~~y------~~~~lHaK~~viD~~~~~vGS~Nl 307 (411)
T PRK11263 236 LRALRNAARRGVRVRLILQGEPDMPIVRVGARLLYNYLLK--GGVQIYEY------CRRPLHGKVALMDDHWATVGSSNL 307 (411)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHH--CCCEEEEe------cCCCceeEEEEECCCEEEEeCCcC
Confidence 999999999999999999862211000 11344554 68998853 457899999999999999999999
Q ss_pred CcccccccccccEEEECChHHHHHHHHHHHHHHh-cCC
Q 009992 189 DWKSLTQVKEVGIYLVGCPTIAKKVEVYFENLWT-LSS 225 (520)
Q Consensus 189 d~~sl~~~~E~gv~i~~~~~la~~l~~~F~~~W~-~~~ 225 (520)
|.+|+..|.|+++.+++ +.+++++.+.|+.++. .+.
T Consensus 308 d~rS~~lN~E~~~~i~d-~~~a~~l~~~~~~~~~~~s~ 344 (411)
T PRK11263 308 DPLSLSLNLEANLIIRD-RAFNQTLRDNLNGLIAADCQ 344 (411)
T ss_pred CHHHhhhhhhcCEEEeC-HHHHHHHHHHHHHHHHhhCE
Confidence 99999999999999987 9999999999999997 443
No 18
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.82 E-value=9.2e-20 Score=191.33 Aligned_cols=157 Identities=20% Similarity=0.164 Sum_probs=114.1
Q ss_pred EEeccCCCCCCCCCCCCcccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHH
Q 009992 39 LVQSIPTDMPHLPRVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIE 118 (520)
Q Consensus 39 lv~s~P~~~~~~~~~~~~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~ 118 (520)
++.+.|...... ......++|+++|++||++|+|++|||..... +++ .+..++.|++||.
T Consensus 201 ~~~s~P~~~~~~----~~~~~~~~ll~~I~~Ak~~I~I~t~yf~P~~~----------~d~------~~~~~~~i~~AL~ 260 (369)
T PHA03003 201 FFSDSPEHLLGY----SRTLDADVVLHKIKSAKKSIDLELLSLVPVIR----------EDD------KTTYWPDIYNALI 260 (369)
T ss_pred EEecCChHHcCC----CCCcCHHHHHHHHHHHhhEEEEEEeccccEEe----------eCC------CCccHHHHHHHHH
Confidence 677888653111 01134689999999999999999999842210 000 1234579999999
Q ss_pred HHh-hCCCeEEEEecC-CCC-CCcchhHHHHHcCCCC----eEEEEeccccccCCCceeeEEEEEcCcEEEecccCCCcc
Q 009992 119 NAA-DRNVRVRLLQHL-GVY-PDFTTEASNLASGRKN----VENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANNDWK 191 (520)
Q Consensus 119 ~aa-~rGV~VrIl~d~-g~~-~~~~~~~~~L~~~~~g----v~v~~~~~~~~~~~~~lH~K~~VvD~~~~~iGSaN~d~~ 191 (520)
+|| +|||+||||+|. +.. .......+.|.+ +| ++++.+. + .+|+|++|||+++++|||+|||++
T Consensus 261 ~AAa~RGV~VRILv~~~~~~~~~~~~~~~~L~~--~G~~~~i~vri~~----~---~~H~K~~VVD~~~a~iGS~N~d~~ 331 (369)
T PHA03003 261 RAAINRGVKVRLLVGSWKKNDVYSMASVKSLQA--LCVGNDLSVKVFR----I---PNNTKLLIVDDEFAHITSANFDGT 331 (369)
T ss_pred HHHHcCCCEEEEEEecCCcCCchhhhHHHHHHH--cCCCCCceEeeec----C---CCCceEEEEcCCEEEEeccccCch
Confidence 985 999999999996 221 112234566765 34 2233221 1 289999999999999999999999
Q ss_pred cccccccccEEEECChHHHHHHHHHHHHHHhcCC
Q 009992 192 SLTQVKEVGIYLVGCPTIAKKVEVYFENLWTLSS 225 (520)
Q Consensus 192 sl~~~~E~gv~i~~~~~la~~l~~~F~~~W~~~~ 225 (520)
|+..+.|.++.+.+ +++|++++++|+++|....
T Consensus 332 s~~~~~e~~~~~~~-~~~a~~l~~~F~~dW~~~~ 364 (369)
T PHA03003 332 HYLHHAFVSFNTID-KELVKELSAIFERDWTSSY 364 (369)
T ss_pred hhccCCCeEEecCC-hhHHHHHHHHHHHHhCCcc
Confidence 99999998887766 8999999999999998643
No 19
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.81 E-value=4.4e-19 Score=166.44 Aligned_cols=147 Identities=26% Similarity=0.283 Sum_probs=113.9
Q ss_pred cccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 009992 56 IVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHLGV 135 (520)
Q Consensus 56 ~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d~g~ 135 (520)
...+++.++++|++|+++|+|+++||+... ......|+++|.+|++|||+|||+++...
T Consensus 19 ~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~---------------------~~~~~~l~~~L~~a~~rGv~V~il~~~~~ 77 (176)
T cd00138 19 GRSDLDALLEAISNAKKSIYIASFYLSPLI---------------------TEYGPVILDALLAAARRGVKVRILVDEWS 77 (176)
T ss_pred cchHHHHHHHHHHhhheEEEEEEeEecccc---------------------cccchHHHHHHHHHHHCCCEEEEEEcccc
Confidence 457889999999999999999999993100 02358999999999999999999999732
Q ss_pred CCC--c-chhHHHHHcC-CCCeEEEEeccccccCCCceeeEEEEEcCcEEEecccCCCcccccccccccEEEECChHHHH
Q 009992 136 YPD--F-TTEASNLASG-RKNVENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANNDWKSLTQVKEVGIYLVGCPTIAK 211 (520)
Q Consensus 136 ~~~--~-~~~~~~L~~~-~~gv~v~~~~~~~~~~~~~lH~K~~VvD~~~~~iGSaN~d~~sl~~~~E~gv~i~~~~~la~ 211 (520)
... . ......|... ..+++++.++.... ..+++|+|++|||++.+++||+||+++++..+.|.++.+.++.++++
T Consensus 78 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~-~~~~~H~K~~iiD~~~~~vGS~N~~~~~~~~~~e~~~~~~~~~~~~~ 156 (176)
T cd00138 78 NTDLKISSAYLDSLRALLDIGVRVFLIRTDKT-YGGVLHTKLVIVDDETAYIGSANLDGRSLTLNSEVGVVIYDPASLAA 156 (176)
T ss_pred cCCchHHHHHHHHHHHhhcCceEEEEEcCCcc-cccceeeeEEEEcCCEEEEECCcCChhhhhhhcceEEEEeChHHHHH
Confidence 222 1 1123445431 13788776542110 13799999999999999999999999999999999999999333999
Q ss_pred HHHHHHHHHHhcC
Q 009992 212 KVEVYFENLWTLS 224 (520)
Q Consensus 212 ~l~~~F~~~W~~~ 224 (520)
++.+.|+.+|...
T Consensus 157 ~~~~~f~~~w~~~ 169 (176)
T cd00138 157 DLKASLERDWNST 169 (176)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999864
No 20
>PLN02352 phospholipase D epsilon
Probab=99.81 E-value=1.8e-17 Score=183.16 Aligned_cols=185 Identities=16% Similarity=0.115 Sum_probs=113.8
Q ss_pred CCCCeEEEEEecc--CCCC-CCCCCCCCcccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCC
Q 009992 31 SRTKCKAWLVQSI--PTDM-PHLPRVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGA 107 (520)
Q Consensus 31 ~~~~c~~~lv~s~--P~~~-~~~~~~~~~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~ 107 (520)
....|++.+-+.. |++. +-..........|+++.++|.+||++|+|+.+-+ .++....- ++......
T Consensus 157 ~r~g~~v~lyqdah~~~~~~p~i~l~~~~~~~f~al~eAI~~Ar~sI~I~gW~~---d~~i~L~R-------~~~~~~p~ 226 (758)
T PLN02352 157 QRSNCHVILYQDAHHCSTFQPPVDLCGSPRKLWEDVYKAIEGAKHLIYIAGWSF---NPKMVLVR-------DPETDIPH 226 (758)
T ss_pred cCCCCEEEEEecCCCccccCCcceeecCHHHHHHHHHHHHHhhccEEEEEEEEe---cCCceecc-------Cccccccc
Confidence 5567998887765 3321 1111123345678999999999999999994333 11100000 00000001
Q ss_pred CCCHHHHHHHHHHhhCCCeEEEE-ecC-CCCCCc------ch-hHHHHHc-CCCCeEEEEec-cc-cccCCCceeeEEEE
Q 009992 108 QEGFDVYKSIENAADRNVRVRLL-QHL-GVYPDF------TT-EASNLAS-GRKNVENVTLL-LG-DWWGSGIVHAKVWI 175 (520)
Q Consensus 108 ~~g~~i~~aL~~aa~rGV~VrIl-~d~-g~~~~~------~~-~~~~L~~-~~~gv~v~~~~-~~-~~~~~~~lH~K~~V 175 (520)
..+..|.+.|.++|++||+|+|| .|. ++.+.. .. +...+.. ...+|.+.-.+ .. +.-....-|.|++|
T Consensus 227 ~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~~~~~g~m~th~~~~~~~f~h~~V~~~l~pr~~~~~~~~~SHHQK~VV 306 (758)
T PLN02352 227 ARGVKLGELLKRKAEEGVAVRVMLWDDETSLPIIKNKGVMGTHDEDAFAYFKHTKVVCKLCPRLHKKFPTLFAHHQKTIT 306 (758)
T ss_pred ccchHHHHHHHHHHHCCCEEEEEEEcCCCcccccccccccccchHHHHhhccCCceEEeeccccccccccccccccceEE
Confidence 35689999999999999999999 674 332211 11 1111211 22455443221 11 11123467999999
Q ss_pred EcCc----------EEEecccCCCc-----------cc-------------------------ccccccccEEEECChHH
Q 009992 176 SDCR----------DVYIGSANNDW-----------KS-------------------------LTQVKEVGIYLVGCPTI 209 (520)
Q Consensus 176 vD~~----------~~~iGSaN~d~-----------~s-------------------------l~~~~E~gv~i~~~~~l 209 (520)
||++ ++|+||..+.. +. ...|.|+++.+.| +.
T Consensus 307 ID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l~d~l~t~~~~~Df~~~~~~g~~~~~g~PR~PWHDvh~~V~G--pA 384 (758)
T PLN02352 307 VDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSLFRTLNTESHCQDFYQTSIAGAKLQKGGPREPWHDAHACIVG--EA 384 (758)
T ss_pred EccCCCCCccccceEEEEcceeccCCccCCccCCcccccccccccccccccccccccCCCCCCCCCcEeEEEEEEC--HH
Confidence 9986 89999999831 00 1247788999999 89
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 009992 210 AKKVEVYFENLWTLSSLN 227 (520)
Q Consensus 210 a~~l~~~F~~~W~~~~~~ 227 (520)
|.++...|.+-|+...+.
T Consensus 385 A~Dv~~~F~qRW~~~~~~ 402 (758)
T PLN02352 385 AWDVLTNFEQRWTKQCNP 402 (758)
T ss_pred HHHHHHHHHHHHhhccCc
Confidence 999999999999987654
No 21
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.81 E-value=4e-19 Score=189.15 Aligned_cols=165 Identities=21% Similarity=0.169 Sum_probs=113.1
Q ss_pred EEEEeccCCCCCCCCCCCCcccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHH
Q 009992 37 AWLVQSIPTDMPHLPRVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKS 116 (520)
Q Consensus 37 ~~lv~s~P~~~~~~~~~~~~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~a 116 (520)
.+++.+.|...... +...-.++++.+|++||++|+|+++||... . +.+++. ..=-..|.+|
T Consensus 201 ~~~~sssP~~~~~~----~r~~~~~~~l~~I~~Ak~~I~I~tpyfvP~---~------~~~~~~------~~yw~~i~~A 261 (424)
T PHA02820 201 SVFIASAPQQLCTM----ERTNDLTALLSCIRNASKFVYVSVMNFIPI---I------YSKAGK------ILFWPYIEDE 261 (424)
T ss_pred eEEEeCCChhhcCC----CCCchHHHHHHHHHHHhhEEEEEEccccce---e------eccCCc------ccchHHHHHH
Confidence 45777778754211 112236799999999999999999999421 0 000000 0001689999
Q ss_pred HHH-HhhCCCeEEEEecCCCC-C-Ccchh---HHHHHcCCCCeEE--EEecccccc----CCCceeeEEEEEcCcEEEec
Q 009992 117 IEN-AADRNVRVRLLQHLGVY-P-DFTTE---ASNLASGRKNVEN--VTLLLGDWW----GSGIVHAKVWISDCRDVYIG 184 (520)
Q Consensus 117 L~~-aa~rGV~VrIl~d~g~~-~-~~~~~---~~~L~~~~~gv~v--~~~~~~~~~----~~~~lH~K~~VvD~~~~~iG 184 (520)
|++ |++|||+||||++.... + ..... ++.|.. +|+++ +.+..+... ..+++|+|++|||+ .++||
T Consensus 262 L~~AA~~RGV~VriLvp~~~d~~~~~~a~~~~l~~L~~--~gv~I~Vk~y~~p~~~~~~~~~~f~HaK~~vvD~-~a~IG 338 (424)
T PHA02820 262 LRRAAIDRKVSVKLLISCWQRSSFIMRNFLRSIAMLKS--KNINIEVKLFIVPDADPPIPYSRVNHAKYMVTDK-TAYIG 338 (424)
T ss_pred HHHHHHhCCCEEEEEEeccCCCCccHHHHHHHHHHHhc--cCceEEEEEEEcCcccccCCcceeeeeeEEEEcc-cEEEE
Confidence 996 66799999999985221 1 11111 334444 45443 222111111 25799999999996 59999
Q ss_pred ccCCCcccccccccccEEEECCh--HHHHHHHHHHHHHHhc
Q 009992 185 SANNDWKSLTQVKEVGIYLVGCP--TIAKKVEVYFENLWTL 223 (520)
Q Consensus 185 SaN~d~~sl~~~~E~gv~i~~~~--~la~~l~~~F~~~W~~ 223 (520)
|+|||+|||..|.|+++.+++.+ .++++|+++|++||..
T Consensus 339 TsN~D~rsf~~n~ev~~~i~~~~~~~~~~~l~~~F~~D~~s 379 (424)
T PHA02820 339 TSNWTGNYFTDTCGVSINITPDDGLGLRQQLEDIFIRDWNS 379 (424)
T ss_pred CCcCCHHHHhccCcEEEEEecCCcHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998842 7999999999999984
No 22
>PLN02270 phospholipase D alpha
Probab=99.80 E-value=2.2e-17 Score=182.88 Aligned_cols=183 Identities=17% Similarity=0.111 Sum_probs=109.7
Q ss_pred CCCCeEEEEEecc--CCCC----CCC-CCCCCcccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCC-CCCCCCCCcccc
Q 009992 31 SRTKCKAWLVQSI--PTDM----PHL-PRVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNS-RSGDYGYSEDDM 102 (520)
Q Consensus 31 ~~~~c~~~lv~s~--P~~~----~~~-~~~~~~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~-~~~d~~~~~~~~ 102 (520)
....|++.|-+.. |++. ... ...-......+.+.++|.+||++|+|.---+. ..... +.+.
T Consensus 175 ~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~AI~~Ar~~IyI~GW~~d---~~i~LvRd~~-------- 243 (808)
T PLN02270 175 QRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAITNAKHLIYITGWSVY---TEISLVRDSR-------- 243 (808)
T ss_pred cCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHHHHhhhcEEEEEEeecC---CCceEecCCC--------
Confidence 4557998887764 3321 000 00111234456667889999999999943331 10000 0000
Q ss_pred cccCCCCCHHHHHHHHHHhhCCCeEEEEe-cC-CCCCCcc---------hhHHHHHcCCCCeEEEEec--cc--------
Q 009992 103 KRFGAQEGFDVYKSIENAADRNVRVRLLQ-HL-GVYPDFT---------TEASNLASGRKNVENVTLL--LG-------- 161 (520)
Q Consensus 103 ~~~~~~~g~~i~~aL~~aa~rGV~VrIl~-d~-g~~~~~~---------~~~~~L~~~~~gv~v~~~~--~~-------- 161 (520)
.........|-+.|.++|++||+|+||+ |. .+.+... ....... ...+|+.+-.+ +.
T Consensus 244 -~p~~~~~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~~~k~~g~m~thd~~t~~~f-~~~~V~~~L~~r~P~~~~~~~~~ 321 (808)
T PLN02270 244 -RPKPGGDVTIGELLKKKASEGVRVLLLVWDDRTSVDLLKKDGLMATHDEETENFF-RGTDVHCILCPRNPDDGGSIVQD 321 (808)
T ss_pred -CCCCCCcchHHHHHHHHhcCCCEEEEEEEcCcccchhhccccccccCHHHHHHHh-ccCCceEEEcCCCcccccceeec
Confidence 0000112578888999999999999999 64 2211111 1111222 12456544221 10
Q ss_pred -cccCCCceeeEEEEEcCc-----------EEEecccCCCc---c--------------------------------ccc
Q 009992 162 -DWWGSGIVHAKVWISDCR-----------DVYIGSANNDW---K--------------------------------SLT 194 (520)
Q Consensus 162 -~~~~~~~lH~K~~VvD~~-----------~~~iGSaN~d~---~--------------------------------sl~ 194 (520)
..-....-|.|++|||++ ++|+||.++.. . ...
T Consensus 322 ~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~~Ldt~h~~Df~~p~~~~~~~~~g~Pr~ 401 (808)
T PLN02270 322 LQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTGASITKGGPRE 401 (808)
T ss_pred cccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCccccccccccccccccccCcccccccccCCCCCC
Confidence 000135789999999998 99999999921 0 122
Q ss_pred ccccccEEEECChHHHHHHHHHHHHHHhcCCCCC
Q 009992 195 QVKEVGIYLVGCPTIAKKVEVYFENLWTLSSLNS 228 (520)
Q Consensus 195 ~~~E~gv~i~~~~~la~~l~~~F~~~W~~~~~~~ 228 (520)
.|.|+++.|+| ++|.+|...|.++|..++++.
T Consensus 402 PWhDvh~rVeG--Paa~dL~~~F~~rW~~atg~~ 433 (808)
T PLN02270 402 PWHDIHSRLEG--PIAWDVLFNFEQRWSKQGGKD 433 (808)
T ss_pred CeEEEEEEEEC--HHHHHHHHHHHHHHHhhcCcc
Confidence 57899999999 899999999999999877653
No 23
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.78 E-value=2.5e-18 Score=161.23 Aligned_cols=146 Identities=25% Similarity=0.337 Sum_probs=112.7
Q ss_pred chHHHHHHHHhhcCCcCEEEEEEeeeeeeeccccccccHHHHHHHHHHHHHcCCCEEEEEeccccCCC-cChHHHHHHhh
Q 009992 319 ADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFI-NNTDEYLKSLL 397 (520)
Q Consensus 319 ~~~~all~~I~~Ak~~~~I~I~~~~y~P~~~~~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~~~~~~-~~~~~~l~sL~ 397 (520)
...+.++++|++|++ +|+|++++|.|.. ..+++.|.++|.+|+ +|||+||||++...... .....++..|.
T Consensus 21 ~~~~~i~~~I~~A~~--~I~i~~~~~~~~~-----~~~~~~l~~~L~~a~-~rGv~V~il~~~~~~~~~~~~~~~~~~l~ 92 (176)
T cd00138 21 SDLDALLEAISNAKK--SIYIASFYLSPLI-----TEYGPVILDALLAAA-RRGVKVRILVDEWSNTDLKISSAYLDSLR 92 (176)
T ss_pred hHHHHHHHHHHhhhe--EEEEEEeEecccc-----cccchHHHHHHHHHH-HCCCEEEEEEcccccCCchHHHHHHHHHH
Confidence 357899999999999 9999999887641 123478999999998 89999999999865443 13334555554
Q ss_pred hccccccccCCCCCCCceeEEEEEcCCCCCCCCcccCCCCCCCCCCCcceeecceeEEec-CeEEEccCCCCcccccccC
Q 009992 398 YSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSD-SRAHIGTSNLVWDYFYTTA 476 (520)
Q Consensus 398 ~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lHaK~~ViD-~~a~IGS~N~d~~sf~~n~ 476 (520)
.. + ..+++++.+ +... .+...+|+|+||+| +.+++||+||+.++|..+.
T Consensus 93 ~~--~---------~~~i~~~~~--~~~~-----------------~~~~~~H~K~~iiD~~~~~vGS~N~~~~~~~~~~ 142 (176)
T cd00138 93 AL--L---------DIGVRVFLI--RTDK-----------------TYGGVLHTKLVIVDDETAYIGSANLDGRSLTLNS 142 (176)
T ss_pred Hh--h---------cCceEEEEE--cCCc-----------------ccccceeeeEEEEcCCEEEEECCcCChhhhhhhc
Confidence 20 0 113555544 3210 01257999999999 7999999999999999999
Q ss_pred CeeeeecChh-HHHHHHHHHHhhccCC
Q 009992 477 GVSFGTYNPA-IVSQLQEIFDADWNSP 502 (520)
Q Consensus 477 e~~l~~~~~~-~~~~l~~~F~~dw~s~ 502 (520)
|.++.+.+++ +++++...|+++|+.+
T Consensus 143 e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 143 EVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred ceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 9999999998 9999999999999975
No 24
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.75 E-value=3.7e-18 Score=151.23 Aligned_cols=119 Identities=27% Similarity=0.366 Sum_probs=90.0
Q ss_pred HHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEecCCCC--CC-c
Q 009992 63 LKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHLGVY--PD-F 139 (520)
Q Consensus 63 ~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d~g~~--~~-~ 139 (520)
+.++|++|+++|+|++||++ ...|+++|.++++|||+|+|+++.... .. .
T Consensus 1 l~~~i~~A~~~i~i~~~~~~---------------------------~~~i~~~l~~~~~~gv~v~ii~~~~~~~~~~~~ 53 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYIT---------------------------DPDIIKALLDAAKRGVKVRIIVDSNQDDSEAIN 53 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS----------------------------SCHHHHHHHHHHHTT-EEEEEEECGGGHHCCCS
T ss_pred CHHHHhccCCEEEEEEEecC---------------------------cHHHHHHHHHHHHCCCeEEEEECCCccccchhh
Confidence 46899999999999999882 256899999999999999999996211 11 1
Q ss_pred chh---HHHH-HcCCCCeEEEEeccccccCCCceeeEEEEEcCcEEEecccCCCcccccccccccEEEECChHHHHHHHH
Q 009992 140 TTE---ASNL-ASGRKNVENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANNDWKSLTQVKEVGIYLVGCPTIAKKVEV 215 (520)
Q Consensus 140 ~~~---~~~L-~~~~~gv~v~~~~~~~~~~~~~lH~K~~VvD~~~~~iGSaN~d~~sl~~~~E~gv~i~~~~~la~~l~~ 215 (520)
... ...+ .. .|++++ .++|+|++|+|++++++||+||+.+++..+.|+++.+.+ +++++++.+
T Consensus 54 ~~~~~~~~~~~~~--~~i~v~----------~~~H~K~~i~d~~~~iiGS~N~t~~~~~~n~E~~~~~~~-~~~~~~~~~ 120 (126)
T PF13091_consen 54 LASLKELRELLKN--AGIEVR----------NRLHAKFYIIDDKVAIIGSANLTSSSFRRNYELGVIIDD-PELVKELIR 120 (126)
T ss_dssp HHHHHHHHHHHHH--TTHCEE----------S-B--EEEEETTTEEEEES--CSCCCSCTSEEEEEEEEC-HHHHHHHHH
T ss_pred hHHHHHHHhhhcc--ceEEEe----------cCCCcceEEecCccEEEcCCCCCcchhcCCcceEEEEEC-HHHHHHHHH
Confidence 111 2223 33 577766 479999999999999999999999999999999999988 889999999
Q ss_pred HHHHHH
Q 009992 216 YFENLW 221 (520)
Q Consensus 216 ~F~~~W 221 (520)
.|+++|
T Consensus 121 ~F~~~W 126 (126)
T PF13091_consen 121 EFDQMW 126 (126)
T ss_dssp HTHH-H
T ss_pred HHhccC
Confidence 999999
No 25
>PLN03008 Phospholipase D delta
Probab=99.74 E-value=1.1e-15 Score=169.73 Aligned_cols=178 Identities=15% Similarity=0.105 Sum_probs=106.1
Q ss_pred CCCCeEEEEEecc--CCCC----CCCC-CCCCcccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCccccc
Q 009992 31 SRTKCKAWLVQSI--PTDM----PHLP-RVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMK 103 (520)
Q Consensus 31 ~~~~c~~~lv~s~--P~~~----~~~~-~~~~~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~ 103 (520)
....|++.|-+.. |++. .... ..-......+-+.++|.+||+.|+|.- .| +. .... |.
T Consensus 205 ~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwedi~~AI~~Ak~~IyI~g-Ws-l~-~ei~------------L~ 269 (868)
T PLN03008 205 VRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDICYAISEAHHMIYIVG-WS-IF-HKIK------------LV 269 (868)
T ss_pred CCCCCEeEEeccCCCCCCCCCccccCCCccccccccHHHHHHHHHhhhheEEEec-ee-ec-ceeE------------Ee
Confidence 4567998887754 3332 0000 000112445556788999999999983 22 11 0000 11
Q ss_pred ccC---CCCCHHHHHHHHHHhhCCCeEEEEe-cC-CCCCC---------cch--hHHHHHcCCCCeEEEEeccc------
Q 009992 104 RFG---AQEGFDVYKSIENAADRNVRVRLLQ-HL-GVYPD---------FTT--EASNLASGRKNVENVTLLLG------ 161 (520)
Q Consensus 104 ~~~---~~~g~~i~~aL~~aa~rGV~VrIl~-d~-g~~~~---------~~~--~~~~L~~~~~gv~v~~~~~~------ 161 (520)
+.. ...+-.|=+.|+++|++||+|.||+ |. .+... ... +..... .+.+|...-.+-.
T Consensus 270 R~~~~~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~thdeet~~~f-~h~~v~~~l~pr~~~~~~~ 348 (868)
T PLN03008 270 RETKVPRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGTHDEETRKFF-KHSSVICVLSPRYASSKLG 348 (868)
T ss_pred cCCCCCCCCCccHHHHHHHHHHCCCEEEEEEecccccccccccccccccccccHHHHHhh-cCCCeeEEECCCccccccc
Confidence 111 1124567778889999999999998 32 21100 001 111121 2355554433200
Q ss_pred --c--------cc------CCCceeeEEEEEcCc--------EEEecccCCC---cc-----------------------
Q 009992 162 --D--------WW------GSGIVHAKVWISDCR--------DVYIGSANND---WK----------------------- 191 (520)
Q Consensus 162 --~--------~~------~~~~lH~K~~VvD~~--------~~~iGSaN~d---~~----------------------- 191 (520)
+ .+ .-..-|.|++|||++ ++|+||.++. |.
T Consensus 349 ~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc~gRwDT~~H~l~~~l~t~~~~D~~np~~ 428 (868)
T PLN03008 349 LFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGRYDTPEHRILHDLDTVFKDDFHNPTF 428 (868)
T ss_pred hhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceeccCCccCCcCCCccccccccccccccCccc
Confidence 0 00 113569999999996 9999999983 10
Q ss_pred ------cccccccccEEEECChHHHHHHHHHHHHHHhcCCC
Q 009992 192 ------SLTQVKEVGIYLVGCPTIAKKVEVYFENLWTLSSL 226 (520)
Q Consensus 192 ------sl~~~~E~gv~i~~~~~la~~l~~~F~~~W~~~~~ 226 (520)
+...|+|+++.++| ++|.+|+..|.+.|..+++
T Consensus 429 ~~~~~~p~~PWHDvh~rVeG--PaV~dL~~~F~qRW~~aTg 467 (868)
T PLN03008 429 PAGTKAPRQPWHDLHCRIDG--PAAYDVLINFEQRWRKATR 467 (868)
T ss_pred cCCCCCCCCCeEEEEEEEEC--HHHHHHHHHHHHHHHHhhC
Confidence 01347899999999 8999999999999998876
No 26
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.71 E-value=6.7e-17 Score=143.15 Aligned_cols=124 Identities=23% Similarity=0.287 Sum_probs=88.2
Q ss_pred HHHHHhhcCCcCEEEEEEeeeeeeeccccccccHHHHHHHHHHHHHcCCCEEEEEeccccCC-CcChHHHHHHhhhcccc
Q 009992 324 WVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHF-INNTDEYLKSLLYSNVL 402 (520)
Q Consensus 324 ll~~I~~Ak~~~~I~I~~~~y~P~~~~~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~~~~~-~~~~~~~l~sL~~~~~l 402 (520)
|+++|++|++ +|+|++|++.. +.|.++|..++ +|||+|||+++..... .......+..+.. +
T Consensus 1 l~~~i~~A~~--~i~i~~~~~~~-----------~~i~~~l~~~~-~~gv~v~ii~~~~~~~~~~~~~~~~~~~~~---~ 63 (126)
T PF13091_consen 1 LIDLIKSAQK--SIWIASPYITD-----------PDIIKALLDAA-KRGVKVRIIVDSNQDDSEAINLASLKELRE---L 63 (126)
T ss_dssp HHHHHHT-SS--EEEEEESSS-S-----------CHHHHHHHHHH-HTT-EEEEEEECGGGHHCCCSHHHHHHHHH---H
T ss_pred CHHHHhccCC--EEEEEEEecCc-----------HHHHHHHHHHH-HCCCeEEEEECCCccccchhhhHHHHHHHh---h
Confidence 5789999999 99999987621 46889999977 9999999999874321 1111122222221 1
Q ss_pred ccccCCCCCCCceeEEEEEcCCCCCCCCcccCCCCCCCCCCCcceeecceeEEec-CeEEEccCCCCcccccccCCeeee
Q 009992 403 CNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSD-SRAHIGTSNLVWDYFYTTAGVSFG 481 (520)
Q Consensus 403 ~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lHaK~~ViD-~~a~IGS~N~d~~sf~~n~e~~l~ 481 (520)
.. ..+++|+ + .+|+|++++| +.+++||+||+.++|..|.|.++.
T Consensus 64 ~~-------~~~i~v~----~------------------------~~H~K~~i~d~~~~iiGS~N~t~~~~~~n~E~~~~ 108 (126)
T PF13091_consen 64 LK-------NAGIEVR----N------------------------RLHAKFYIIDDKVAIIGSANLTSSSFRRNYELGVI 108 (126)
T ss_dssp HH-------HTTHCEE----S-------------------------B--EEEEETTTEEEEES--CSCCCSCTSEEEEEE
T ss_pred hc-------cceEEEe----c------------------------CCCcceEEecCccEEEcCCCCCcchhcCCcceEEE
Confidence 00 1245555 1 5899999998 899999999999999999999999
Q ss_pred ecChhHHHHHHHHHHhhc
Q 009992 482 TYNPAIVSQLQEIFDADW 499 (520)
Q Consensus 482 ~~~~~~~~~l~~~F~~dw 499 (520)
+.++++++++.+.|+++|
T Consensus 109 ~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 109 IDDPELVKELIREFDQMW 126 (126)
T ss_dssp EECHHHHHHHHHHTHH-H
T ss_pred EECHHHHHHHHHHHhccC
Confidence 999999999999999999
No 27
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=99.70 E-value=1.8e-16 Score=169.86 Aligned_cols=152 Identities=25% Similarity=0.263 Sum_probs=119.3
Q ss_pred eEEEEEeccCCCCCCCCCCCCcccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHH
Q 009992 35 CKAWLVQSIPTDMPHLPRVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVY 114 (520)
Q Consensus 35 c~~~lv~s~P~~~~~~~~~~~~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~ 114 (520)
+.++++.+.|....... .......++++|.+|+++|+|+++|| .++..++
T Consensus 251 ~~~~~~~~~P~~~~~~~----~~~~~~~~~~~i~~A~~~i~i~~pYf--------------------------~~~~~~~ 300 (438)
T COG1502 251 STVQVLSSGPDKGLGSE----LIELNRLLLKAINSARESILIATPYF--------------------------VPDRELL 300 (438)
T ss_pred cceEEEecCCccccchh----hhhHHHHHHHHHHhhceEEEEEcCCc--------------------------CCCHHHH
Confidence 34678999997531110 01133688999999999999999999 2468999
Q ss_pred HHHHHHhhCCCeEEEEecCCCCCCcc-------hhHHHHHcCCCCeEEEEeccccccCCC-ceeeEEEEEcCcEEEeccc
Q 009992 115 KSIENAADRNVRVRLLQHLGVYPDFT-------TEASNLASGRKNVENVTLLLGDWWGSG-IVHAKVWISDCRDVYIGSA 186 (520)
Q Consensus 115 ~aL~~aa~rGV~VrIl~d~g~~~~~~-------~~~~~L~~~~~gv~v~~~~~~~~~~~~-~lH~K~~VvD~~~~~iGSa 186 (520)
++|..|++|||+|+|+++........ .....|.. .|++++.. ..| .+|+|++|||+++++|||+
T Consensus 301 ~al~~a~~~Gv~V~ii~~~~~~~d~~~~~~~~~~~~~~l~~--~gv~i~~~------~~g~~lH~K~~iiD~~~~~vGS~ 372 (438)
T COG1502 301 AALKAAARRGVDVRIIIPSLGANDSAIVHAAYRAYLKELLE--AGVKVYEY------PGGAFLHSKVMIIDDRTVLVGSA 372 (438)
T ss_pred HHHHHHHhcCCEEEEEeCCCCCCChHHHHHHHHHHHHHHHH--hCCEEEEe------cCCCcceeeEEEEcCCEEEEeCC
Confidence 99999999999999999952111111 11233443 68888764 345 8999999999999999999
Q ss_pred CCCcccccccccccEEEECChHHHHHHHHHHHHHHhcCC
Q 009992 187 NNDWKSLTQVKEVGIYLVGCPTIAKKVEVYFENLWTLSS 225 (520)
Q Consensus 187 N~d~~sl~~~~E~gv~i~~~~~la~~l~~~F~~~W~~~~ 225 (520)
|||.||+..|.|.+++|++ +.+++++.+.|+.+|....
T Consensus 373 N~~~rS~~lN~E~~~~i~d-~~~~~~~~~~~~~~~~~s~ 410 (438)
T COG1502 373 NLDPRSLRLNFEVGLVIED-PELALKLRREFEADLARSK 410 (438)
T ss_pred cCCHhHHHHhhhheeEEeC-HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998 8899999999998887654
No 28
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=99.63 E-value=3.8e-14 Score=156.89 Aligned_cols=154 Identities=16% Similarity=0.148 Sum_probs=100.7
Q ss_pred cccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccC-CCCCHHHHHHHHHHhhCCCeEEEEecC-
Q 009992 56 IVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFG-AQEGFDVYKSIENAADRNVRVRLLQHL- 133 (520)
Q Consensus 56 ~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~-~~~g~~i~~aL~~aa~rGV~VrIl~d~- 133 (520)
....++.+.++|.+||+.|+|. =.| + .++.. |.+.. +..+-.|=+.|+++|++||+|.||+=.
T Consensus 301 ~~~~~edi~dAI~~Ar~~IyIt-gWw-l-~pel~------------L~Rp~~~~~~~rLdelLK~KAeeGVrV~ilv~kd 365 (887)
T KOG1329|consen 301 GKKYWEDVADAIENARREIYIT-GWW-L-SPELY------------LVRPPKGPNDWRLDELLKRKAEEGVRVLILVWKD 365 (887)
T ss_pred hhhHHHHHHHHHHhhhhEEEEe-ccc-c-CceEE------------EEccCCCCCceEHHHHHHHHHhCCcEEEEEEecc
Confidence 3466788889999999999998 333 2 11100 11111 122345667788899999999999832
Q ss_pred -CCCCCcch-h-HHHHHcCCCCeEEEEeccccccCCC----ceeeEEEEEcCcEEEecccCC-Cccc-------------
Q 009992 134 -GVYPDFTT-E-ASNLASGRKNVENVTLLLGDWWGSG----IVHAKVWISDCRDVYIGSANN-DWKS------------- 192 (520)
Q Consensus 134 -g~~~~~~~-~-~~~L~~~~~gv~v~~~~~~~~~~~~----~lH~K~~VvD~~~~~iGSaN~-d~~s------------- 192 (520)
.+.....+ + .+.|...+.+|++...|- ....++ --|.|++|||.++++|||.-+ +.|.
T Consensus 366 v~s~~~i~S~~~k~~l~~lH~nV~vlr~P~-~~~~~~~~~wtHHeK~VVVD~~v~fvGGlDLC~GRYDT~eH~L~d~~~~ 444 (887)
T KOG1329|consen 366 VTSALGINSHYEKTRLFFLHPNVKVLRCPR-HPGSGPTTLWTHHEKLVVVDQEVAFVGGLDLCDGRYDTPEHPLFDTLQT 444 (887)
T ss_pred chhccccCchhHHHHHhhcCCCeEEEECCC-CcCCCCceEEecceEEEEEcceeccccceeccccccCCccccccccccc
Confidence 22111112 1 233444568898886541 111121 359999999999999999887 2111
Q ss_pred ----------c-------------cccccccEEEECChHHHHHHHHHHHHHHhcCCCC
Q 009992 193 ----------L-------------TQVKEVGIYLVGCPTIAKKVEVYFENLWTLSSLN 227 (520)
Q Consensus 193 ----------l-------------~~~~E~gv~i~~~~~la~~l~~~F~~~W~~~~~~ 227 (520)
+ ..|.|++..+.| +.|.|+.+-|++=|+....+
T Consensus 445 ~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G--~~ArDvarhF~QRWn~~~~~ 500 (887)
T KOG1329|consen 445 WHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDG--PAARDVARHFEQRWNKQKRE 500 (887)
T ss_pred cccccccCcccccchhcccCCCCCCCceeeeeeeeC--hhHHHHHHHHHHHHHHHhcc
Confidence 0 126778899988 78999999999999987654
No 29
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=99.55 E-value=4.2e-14 Score=151.51 Aligned_cols=130 Identities=13% Similarity=0.038 Sum_probs=98.2
Q ss_pred cHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEecCCCC-
Q 009992 58 SSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHLGVY- 136 (520)
Q Consensus 58 ~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d~g~~- 136 (520)
.....+..+|.+|+++|+|.||||+ ++..+.++|..|++|||+|+|++++...
T Consensus 251 ~l~~~~~~li~~A~~~i~I~TPYF~--------------------------p~~~l~~~L~~a~~rGv~V~Ii~~~~~an 304 (451)
T PRK09428 251 LLNKTIFHLMASAEQKLTICTPYFN--------------------------LPAILVRNIIRLLRRGKKVEIIVGDKTAN 304 (451)
T ss_pred HHHHHHHHHHhccCcEEEEEeCCcC--------------------------CCHHHHHHHHHHHhcCCcEEEEcCCcccc
Confidence 4567788999999999999999993 3588999999999999999999985210
Q ss_pred ---CCcc----h-----hHHHH----------HcCCCC---eEEEEeccccccCCCceeeEEEEEcCcEEEecccCCCcc
Q 009992 137 ---PDFT----T-----EASNL----------ASGRKN---VENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANNDWK 191 (520)
Q Consensus 137 ---~~~~----~-----~~~~L----------~~~~~g---v~v~~~~~~~~~~~~~lH~K~~VvD~~~~~iGSaN~d~~ 191 (520)
.... . ..-++ ....+| |+++. +.++.+|+|.++||+++++|||+|+|.|
T Consensus 305 dfy~~~d~~~~~~~~~py~ye~~lr~f~~~~~~li~~G~l~v~i~~------~~~~~~HaK~i~vD~~~~~iGS~Nld~R 378 (451)
T PRK09428 305 DFYIPPDEPFKIIGALPYLYEINLRRFAKRLQYYIDNGQLNVRLWK------DGDNSYHLKGIWVDDRWMLLTGNNLNPR 378 (451)
T ss_pred cCcCCCccHHHHhhhhHHHHHHhhhhhHHHhhhhhhcCcceEEEEe------cCCCcceEEEEEEeCCEEEEcCCCCChh
Confidence 0001 0 00010 001134 55553 3567899999999999999999999999
Q ss_pred cccccccccEEEECChHHHHHHHHHHHHHHh
Q 009992 192 SLTQVKEVGIYLVGCPTIAKKVEVYFENLWT 222 (520)
Q Consensus 192 sl~~~~E~gv~i~~~~~la~~l~~~F~~~W~ 222 (520)
|+..|.|++++|++ +. +.|++.|++...
T Consensus 379 S~~ln~E~~l~i~d-~~--~~l~~~~~~E~~ 406 (451)
T PRK09428 379 AWRLDLENALLIHD-PK--QELAEQREKELE 406 (451)
T ss_pred HhhhcccceEEEEC-Ch--HHHHHHHHHHHH
Confidence 99999999999988 42 666666666554
No 30
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=99.53 E-value=2.2e-13 Score=140.25 Aligned_cols=157 Identities=17% Similarity=0.289 Sum_probs=116.8
Q ss_pred chHHHHHHHHhhcCCcCEEEEEEeeeeeeeccc---cccccH-HHHHHHHHHHHHcCCCEEEEEeccccCCCcChHHHHH
Q 009992 319 ADEQAWVDTIKSVGTRATLRISTMDWLGQSQYL---KQTVYW-SALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLK 394 (520)
Q Consensus 319 ~~~~all~~I~~Ak~~~~I~I~~~~y~P~~~~~---~~~~~~-~~i~~AL~~Aa~~RGV~VRILi~~~~~~~~~~~~~l~ 394 (520)
...++++.+|++|++ +|+|+++|+.-...+. +...+| ..+++.|...+ .+||.|||..+......+..+ +.
T Consensus 72 sT~eaW~~Ll~sA~~--eldIas~ywsL~~~d~~~~dsSt~~G~~vy~~L~~~~-~~gIsiriA~~~p~~~~~~~d--~~ 146 (456)
T KOG3603|consen 72 STKEAWLELLSTAQE--ELDIASFYWSLTGKDTGVVDSSTQYGEQVYNTLLALA-KSGVKIRIAQSYPSGGPPNAD--LQ 146 (456)
T ss_pred cHHHHHHHHhhccce--EEEEEEEeeccccceeccCCCcchHHHHHHHHHHHhc-cCCeEEEEEeecCCCCCCccc--HH
Confidence 446999999999999 9999998876442221 233333 67999999988 899999999987543333322 22
Q ss_pred HhhhccccccccCCCCCCCceeEEEEEcCCCCCCCCcccCCCCCCCCCCCcceeecceeEEec-CeEEEccCCCCccccc
Q 009992 395 SLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSD-SRAHIGTSNLVWDYFY 473 (520)
Q Consensus 395 sL~~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lHaK~~ViD-~~a~IGS~N~d~~sf~ 473 (520)
-|.+ . +-++||-..++.. +-.+++|.|+.|+| +.-++||+|||+||++
T Consensus 147 ~Le~---~----------Gaa~vr~id~~~l------------------~g~GvlHtKf~vvD~khfylGSaNfDWrSlT 195 (456)
T KOG3603|consen 147 VLES---L----------GLAQVRSIDMNRL------------------TGGGVLHTKFWVVDIKHFYLGSANFDWRSLT 195 (456)
T ss_pred HHHh---C----------CCceEEeeccccc------------------ccCceEEEEEEEEecceEEEeccccchhhcc
Confidence 2221 1 2256665544321 11379999999999 8999999999999999
Q ss_pred ccCCeeeeec-ChhHHHHHHHHHHhhccCCCcccccccC
Q 009992 474 TTAGVSFGTY-NPAIVSQLQEIFDADWNSPYAFPVEELG 511 (520)
Q Consensus 474 ~n~e~~l~~~-~~~~~~~l~~~F~~dw~s~ya~~l~~~~ 511 (520)
.-.|++++++ .+.++++|.++|+++|...++..+.+-+
T Consensus 196 qvkElGv~v~NCpclakDL~kiFe~yW~lg~~~s~~p~~ 234 (456)
T KOG3603|consen 196 QVKELGVVVRNCPCLAKDLKKIFERYWYLGNAKSLIPKK 234 (456)
T ss_pred ceeEeeeEEecChhHHHHHHHHHHHHhcCCCCCccCCCC
Confidence 9999999876 5899999999999999998888654433
No 31
>PRK05443 polyphosphate kinase; Provisional
Probab=99.44 E-value=6.7e-13 Score=148.30 Aligned_cols=133 Identities=19% Similarity=0.197 Sum_probs=103.3
Q ss_pred HHHHHHHHhhcCC---cCEEEEEEeeeeeeeccccccccHHHHHHHHHHHHHcCCCEEEEEeccccCCCc-ChHHHHHHh
Q 009992 321 EQAWVDTIKSVGT---RATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFIN-NTDEYLKSL 396 (520)
Q Consensus 321 ~~all~~I~~Ak~---~~~I~I~~~~y~P~~~~~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~~~~~~~-~~~~~l~sL 396 (520)
-+.++++|++|.+ -..|.|.. |.+-. + ..|.+||++|| +|||+|++|++.+...+. ....+.+.|
T Consensus 350 F~~~~~~i~~Aa~DP~V~~Ik~tl-Yr~~~----~-----s~iv~aL~~Aa-~~Gk~V~vlve~karfde~~n~~~~~~L 418 (691)
T PRK05443 350 FDPVVEFLRQAAADPDVLAIKQTL-YRTSK----D-----SPIVDALIEAA-ENGKQVTVLVELKARFDEEANIRWARRL 418 (691)
T ss_pred chHHHHHHHHhccCCCeeEEEEEE-EEecC----C-----HHHHHHHHHHH-HcCCEEEEEEccCccccHHHHHHHHHHH
Confidence 4789999999986 11377775 32211 1 57999999999 999999999997643332 234556666
Q ss_pred hhccccccccCCCCCCCceeEEE-EEcCCCCCCCCcccCCCCCCCCCCCcceeecceeEEec-C-------eEEEccCCC
Q 009992 397 LYSNVLCNSSKYNKCSGKVEIKY-YKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSD-S-------RAHIGTSNL 467 (520)
Q Consensus 397 ~~~~~l~~~~~~~~~~~~i~Vr~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lHaK~~ViD-~-------~a~IGS~N~ 467 (520)
.+ .||++ |.+++ .+.|+|++++| + +++|||.||
T Consensus 419 ~~----------------aGv~V~y~~~~----------------------~k~HaK~~lid~~e~~~~~~~~~iGTgN~ 460 (691)
T PRK05443 419 EE----------------AGVHVVYGVVG----------------------LKTHAKLALVVRREGGGLRRYVHLGTGNY 460 (691)
T ss_pred HH----------------cCCEEEEccCC----------------------ccceeEEEEEEeecCCceeEEEEEcCCCC
Confidence 42 45555 55542 57999999887 6 899999999
Q ss_pred CcccccccCCeeeeecChhHHHHHHHHHHhhccCC
Q 009992 468 VWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWNSP 502 (520)
Q Consensus 468 d~~sf~~n~e~~l~~~~~~~~~~l~~~F~~dw~s~ 502 (520)
+.+|+..+.|+++.+.|+++++++.++|..+|...
T Consensus 461 n~~s~~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~ 495 (691)
T PRK05443 461 NPKTARLYTDLSLLTADPEIGEDVTRLFNYLTGYS 495 (691)
T ss_pred CcchhhhccceeEEEeChHHHHHHHHHHHHHhCcC
Confidence 99999999999999999999999999999998753
No 32
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=99.37 E-value=2.8e-10 Score=115.84 Aligned_cols=286 Identities=16% Similarity=0.167 Sum_probs=174.4
Q ss_pred HHHHHHHHHhccc-----EEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEecCC
Q 009992 60 GNVLKWLAGNSTK-----RLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHLG 134 (520)
Q Consensus 60 ~~~~~~lI~~Ak~-----sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d~g 134 (520)
|+..+++|++|-. +|.|. -|=+ .....|+++|++||+.|-+|.+++.-.
T Consensus 20 f~~vv~fl~eAA~DP~V~aIk~T-LYR~-------------------------a~~S~iv~aLi~AA~nGK~Vtv~vELk 73 (352)
T PF13090_consen 20 FDPVVDFLREAAEDPDVLAIKIT-LYRV-------------------------ASNSPIVNALIEAAENGKQVTVLVELK 73 (352)
T ss_dssp TCHHHHHHHHHCC-TTEEEEEEE-ESSS--------------------------TT-HHHHHHHHHHHTT-EEEEEESTT
T ss_pred cHHHHHHHHHHhcCCCccEEEEE-EEec-------------------------CCCCHHHHHHHHHHHcCCEEEEEEEEe
Confidence 4567888888855 56555 4431 124789999999999999999999742
Q ss_pred C--CC-CcchhHHHHHcCCCCeEEEEeccccccCCCceeeEEEEE----cC---cEEEecccCCCcccccccccccEEEE
Q 009992 135 V--YP-DFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWIS----DC---RDVYIGSANNDWKSLTQVKEVGIYLV 204 (520)
Q Consensus 135 ~--~~-~~~~~~~~L~~~~~gv~v~~~~~~~~~~~~~lH~K~~Vv----D~---~~~~iGSaN~d~~sl~~~~E~gv~i~ 204 (520)
. .. .+-.+.+.|.. +|++|.. ...+.-.|+|+++| ++ +.+.+|+-|+.-..-..-.|++++.-
T Consensus 74 ARFDEe~Ni~Wa~~Le~--aGv~Viy-----G~~glKvHaK~~lI~R~e~~~~~~Y~hlgTGNyNe~TAr~YtD~~l~Ta 146 (352)
T PF13090_consen 74 ARFDEENNIHWAKRLEE--AGVHVIY-----GVPGLKVHAKICLIVRREGGGLRRYAHLGTGNYNEKTARIYTDLSLFTA 146 (352)
T ss_dssp SSSTTCCCCCCCHHHHH--CT-EEEE-------TT-EE--EEEEEEEEETTEEEEEEEEESS-SSTTHCCCEEEEEEEE-
T ss_pred ccccHHHHhHHHhhHHh--cCeEEEc-----CCCChhheeeEEEEEEEeCCcEEEEEEEcCCCcCccchhheecceeecC
Confidence 1 11 22335678876 7898873 12456799999999 22 57899999998777666778898886
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCCCccccccchhhhhccccCCCCcccCCCCCccCCCCCCCccCCCcCCCCccCCcccc
Q 009992 205 GCPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQANRTVPCWSHFLDPKGRCRSPLPPVLEVPHVEGYPILSDPYMF 284 (520)
Q Consensus 205 ~~~~la~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~ 284 (520)
+ +.++.|+.++|...-.... .+.|.
T Consensus 147 ~-~~i~~D~~~~F~~l~~~~~--------------------~~~~~---------------------------------- 171 (352)
T PF13090_consen 147 D-PEIGADVAKLFNYLTGYSK--------------------PPKYK---------------------------------- 171 (352)
T ss_dssp --HHHHHHHHHHHHHHCTTTS---------------------S--S----------------------------------
T ss_pred C-HHHHHHHHHHHHHHhCCCc--------------------ccccc----------------------------------
Confidence 6 9999999999988622110 01000
Q ss_pred cccccCCCCCCCCCCCceeeeecCCCCCCCCCCcchHHHHHHHHhhcCCcCEEEEEEeeeeeeeccccccccHHHHHHHH
Q 009992 285 RETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAV 364 (520)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~ls~sP~~~~~~~r~~~~~all~~I~~Ak~~~~I~I~~~~y~P~~~~~~~~~~~~~i~~AL 364 (520)
..++ ||-.+ |...++.+-.-|..|+++..=+|.. -.- ...+ +.|.++|
T Consensus 172 -----------------~Llv--aP~~l----r~~~~~lI~~Ei~~a~~G~~a~I~~-K~N---sL~D-----~~iI~~L 219 (352)
T PF13090_consen 172 -----------------HLLV--APFNL----RKKLLELIDREIENAKAGKPARIIA-KMN---SLTD-----PEIIDKL 219 (352)
T ss_dssp -----------------S-EE--CTTTC----HHHHHHHHHHHHHHHCTTS-EEEEE-EES----B-------HHHHHHH
T ss_pred -----------------ceeE--ChHHH----HHHHHHHHHHHHHHHhCCCCcEEEE-Eec---CCCC-----HHHHHHH
Confidence 0122 44321 1122333444555555543333321 000 0112 7899999
Q ss_pred HHHHHcCCCEEEEEeccccCCCcChHHHHHHhhhccccccccCCCCCCCceeEEEEEcCCCCCCCCcccCCCCCCCCCCC
Q 009992 365 SEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPG 444 (520)
Q Consensus 365 ~~Aa~~RGV~VRILi~~~~~~~~~~~~~l~sL~~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~~~~~~~~~ 444 (520)
.+|+ +.||+|+++|-+-..-.|.. ..-..+|.|+-.. . .
T Consensus 220 y~AS-~AGV~I~LiVRGiCcL~Pgi-------------------~g~SeNI~V~SIV-g--------------------R 258 (352)
T PF13090_consen 220 YEAS-QAGVKIDLIVRGICCLRPGI-------------------PGLSENIRVISIV-G--------------------R 258 (352)
T ss_dssp HHHH-HTTEEEEEEESS-B-C-TTS-------------------CTCCTTEEEEEE--S--------------------S
T ss_pred HHHH-hCCCEEEEEEecccccCCCC-------------------CCCCCCEEEEEec-c--------------------c
Confidence 9998 99999999998753322321 0112456665442 1 1
Q ss_pred cceeecceeEEe--c--CeEEEccCCCCcccccccCCeeeeecChhHHHHHHHHHHhhccC-CCccccc
Q 009992 445 FTRVNHGKYAVS--D--SRAHIGTSNLVWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWNS-PYAFPVE 508 (520)
Q Consensus 445 ~~~~lHaK~~Vi--D--~~a~IGS~N~d~~sf~~n~e~~l~~~~~~~~~~l~~~F~~dw~s-~ya~~l~ 508 (520)
| .=|+.++.. + ..+|+||+-|=.|-++.--|+.+=+.|+.+.+++.++++-.|.. ..+.-++
T Consensus 259 f--LEHsRi~~F~n~g~~~~yisSADwM~RNl~rRVEv~~PI~D~~lk~~l~~il~~~l~Dn~ka~~l~ 325 (352)
T PF13090_consen 259 F--LEHSRIYYFGNGGDEEVYISSADWMTRNLDRRVEVAFPIYDPRLKKELKDILDLQLKDNVKARILD 325 (352)
T ss_dssp S--EE--EEEEE-GCCS-EEEEESS-BSHHHHHTCEEEEEE--SHHHHHHHHHHHHHCCCTTCSEEEE-
T ss_pred c--cchhheeeecCCCCCeEEEEccccccCCCCeeEEEEeEECCHHHHHHHHHHHHHhCCcCcceEEEC
Confidence 1 358887776 3 68999999999999999999999999999999999999999964 4444443
No 33
>PLN02352 phospholipase D epsilon
Probab=99.05 E-value=8.2e-10 Score=123.06 Aligned_cols=161 Identities=17% Similarity=0.114 Sum_probs=100.0
Q ss_pred CCCeEEEEEeccCCCC--CCCCCCCCcccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCC--CCCCCcccccccCC
Q 009992 32 RTKCKAWLVQSIPTDM--PHLPRVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSG--DYGYSEDDMKRFGA 107 (520)
Q Consensus 32 ~~~c~~~lv~s~P~~~--~~~~~~~~~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~--d~~~~~~~~~~~~~ 107 (520)
.++|.+|++.|++.+. .++...+.-.++.++++++|++||+.|||++.||+-. |..-++ +.+.. -
T Consensus 425 ~~~w~VQv~RSid~~sa~~~P~~~~~erSIq~AYi~AIr~AqhfIYIENQYFiss---~~~w~~~~~~~~~--------N 493 (758)
T PLN02352 425 NRNWKVQVYRSIDHVSASHMPRNLPVERSIHEAYVEAIRRAERFIYIENQYFIGG---CHLWEKDNHCGCT--------N 493 (758)
T ss_pred CCcccceEEEecCccccccCCCCCchhhHHHHHHHHHHHhhhhEEEEehhhhhcc---ccccccccccchh--------c
Confidence 4579999999998753 1222233457899999999999999999999999421 000000 01111 1
Q ss_pred CCCHHHHHHHHHHhh--CCCeEEEEecC--CCCCCcc----------hh--------HHHHHcCCCCeE--------EEE
Q 009992 108 QEGFDVYKSIENAAD--RNVRVRLLQHL--GVYPDFT----------TE--------ASNLASGRKNVE--------NVT 157 (520)
Q Consensus 108 ~~g~~i~~aL~~aa~--rGV~VrIl~d~--g~~~~~~----------~~--------~~~L~~~~~gv~--------v~~ 157 (520)
..+.+|.++|.++.+ ++-+|.|+++. ++.+... .. .+.|++ +|.+ +..
T Consensus 494 ~I~~eIa~kI~~kir~~e~f~V~IViP~~PeG~~e~~~vq~il~wq~~TM~~~y~~I~~~L~~--~g~~~~P~dYl~F~c 571 (758)
T PLN02352 494 LIPIEIALKIASKIRAKERFAVYILIPMWPEGVPESEPVQDILHWTRETMAMMYKLIGEAIQE--SGEPGHPRDYLNFFC 571 (758)
T ss_pred chHHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH--cCccCChhHheeeec
Confidence 345688888887754 56889999986 2222110 00 112332 2322 111
Q ss_pred ecc------ccc-------------c--C----CCceeeEEEEEcCcEEEecccCCCccccc--ccccccEEEEC
Q 009992 158 LLL------GDW-------------W--G----SGIVHAKVWISDCRDVYIGSANNDWKSLT--QVKEVGIYLVG 205 (520)
Q Consensus 158 ~~~------~~~-------------~--~----~~~lH~K~~VvD~~~~~iGSaN~d~~sl~--~~~E~gv~i~~ 205 (520)
+.- ... . . .-..|+|+||||++.+.|||||++.||+. ...|+.+.++.
T Consensus 572 L~n~e~~~~g~~~~~~~p~~~~~~~~~~~~rr~~IYVHSKlMIVDD~~viIGSANIN~RSM~G~rDSEia~~~~~ 646 (758)
T PLN02352 572 LANREEKRKGEFVPPYSPHQKTQYWNAQKNRRFMVYVHSKLMIVDDTYILIGSANVNQRSMDGCRDTEIAIGCYQ 646 (758)
T ss_pred ccccccccCCccccccCCCCCchhhhcccccceeEEEeeeEEEEcCcEEEEcccccccccccCcccchhhhcccc
Confidence 100 000 0 0 13579999999999999999999999998 56777776655
No 34
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.02 E-value=2.2e-09 Score=119.76 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=94.0
Q ss_pred HHHHHHHHhccc----EEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEecCCC-
Q 009992 61 NVLKWLAGNSTK----RLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHLGV- 135 (520)
Q Consensus 61 ~~~~~lI~~Ak~----sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d~g~- 135 (520)
+.+...|.+||+ +|+|.++|+. ++.|+++|..|+++||+|++++.+-+
T Consensus 507 ~~i~~ei~~Ak~g~~~~I~ik~n~l~---------------------------D~~ii~aL~~As~aGV~V~LivRGiCc 559 (672)
T TIGR03705 507 ELIDREIENARAGKPARIIAKMNSLV---------------------------DPDLIDALYEASQAGVKIDLIVRGICC 559 (672)
T ss_pred HHHHHHHHHHHcCCCCEEEEEcCCCC---------------------------CHHHHHHHHHHHHCCCeEEEEEecccc
Confidence 444456778998 9999999971 48899999999999999999995311
Q ss_pred -CCCcchhHHHHHcCCCCeEEEEeccccccCCCceeeEEEEE---cCcEEEecccCCCcccccccccccEEEECChHHHH
Q 009992 136 -YPDFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWIS---DCRDVYIGSANNDWKSLTQVKEVGIYLVGCPTIAK 211 (520)
Q Consensus 136 -~~~~~~~~~~L~~~~~gv~v~~~~~~~~~~~~~lH~K~~Vv---D~~~~~iGSaN~d~~sl~~~~E~gv~i~~~~~la~ 211 (520)
.|..+ .+. .++.++.+ .+...-|+|++.+ |++.+|+|||||+.|||..+.|+++.+++ +.+++
T Consensus 560 L~pgip----g~s---d~i~v~si-----v~r~Leh~rIy~f~~~~d~~~~igSAn~m~Rnl~~r~E~~~~i~d-~~~~~ 626 (672)
T TIGR03705 560 LRPGVP----GLS---ENIRVRSI-----VGRFLEHSRIYYFGNGGEEKVYISSADWMTRNLDRRVEVLFPIED-PTLKQ 626 (672)
T ss_pred cCCCCC----CCC---CCEEEEEE-----hhHhhCcCEEEEEeCCCCcEEEEECCCCCCCcccceEEEEEEEcC-HHHHH
Confidence 11100 011 24555432 1212228888887 57799999999999999999999999998 99999
Q ss_pred HHHH-HHHHHHhcCC
Q 009992 212 KVEV-YFENLWTLSS 225 (520)
Q Consensus 212 ~l~~-~F~~~W~~~~ 225 (520)
.+.. +++..|....
T Consensus 627 ~l~~~il~~~l~Dn~ 641 (672)
T TIGR03705 627 RVLDEILEAYLADNV 641 (672)
T ss_pred HHHHHHHHHhCcccc
Confidence 9988 9999997643
No 35
>PLN02866 phospholipase D
Probab=99.02 E-value=1.5e-09 Score=123.39 Aligned_cols=158 Identities=23% Similarity=0.220 Sum_probs=98.1
Q ss_pred CCCCeEEEEEeccCCCCCCCCCCCCcccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCC
Q 009992 31 SRTKCKAWLVQSIPTDMPHLPRVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEG 110 (520)
Q Consensus 31 ~~~~c~~~lv~s~P~~~~~~~~~~~~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g 110 (520)
...+|++|||.|.-. +......--.|+.++++++|++|++.|||++-||.-. + +++.. ..-..+
T Consensus 706 ~~~~c~~QivRS~~~--WS~G~~~~E~SI~~AYi~~I~~A~hfIYIENQFFis~---~---~~~~~--------i~N~I~ 769 (1068)
T PLN02866 706 PRVSCRCQVIRSVSQ--WSAGTSQVEESIHAAYCSLIEKAEHFIYIENQFFISG---L---SGDDT--------IQNRVL 769 (1068)
T ss_pred CCCeEEEEEEeeccc--ccCCCCchHHHHHHHHHHHHHhcccEEEEeccccccc---c---ccccc--------ccchHH
Confidence 566899999999754 2222111245899999999999999999999999421 0 00000 001345
Q ss_pred HHHHHHHHHHhhCC--CeEEEEecC--C---CCCC-cchh-------------------HHHHHcCCCCeE---EEE-ec
Q 009992 111 FDVYKSIENAADRN--VRVRLLQHL--G---VYPD-FTTE-------------------ASNLASGRKNVE---NVT-LL 159 (520)
Q Consensus 111 ~~i~~aL~~aa~rG--V~VrIl~d~--g---~~~~-~~~~-------------------~~~L~~~~~gv~---v~~-~~ 159 (520)
..|++.+++|+++| -+|.|+++. + ..+. .... .+.|++. .|.+ +.. +.
T Consensus 770 ~AL~~RI~rA~~~~~~frviIViP~~P~F~G~v~~~~~~svr~Im~~Q~~tI~rG~~Si~~~L~~~-~g~~p~dYisf~~ 848 (1068)
T PLN02866 770 EALYRRILRAHKEKKCFRVIIVIPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGKNSILHNLYDL-LGPKTHDYISFYG 848 (1068)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCCcCCCCCCccchhHHHHHHHHHHHHHhhHHHHHHHHHHH-hCCCHHHeEeeec
Confidence 66666666887765 667777775 2 1110 0000 1223321 1222 111 11
Q ss_pred cccc---cCC-------CceeeEEEEEcCcEEEecccCCCcccc--cccccccEEEEC
Q 009992 160 LGDW---WGS-------GIVHAKVWISDCRDVYIGSANNDWKSL--TQVKEVGIYLVG 205 (520)
Q Consensus 160 ~~~~---~~~-------~~lH~K~~VvD~~~~~iGSaN~d~~sl--~~~~E~gv~i~~ 205 (520)
...+ ..+ -..|+|++|||++++.|||||++.||+ ..+.|+++.+++
T Consensus 849 LRn~~~l~~~~~~vteqIYVHsK~~IvDD~~~iiGSaNiN~RS~~G~rDsEia~~~~d 906 (1068)
T PLN02866 849 LRAYGRLFEGGPLATSQIYVHSKIMIVDDRAALIGSANINDRSLLGSRDSEIGVVIED 906 (1068)
T ss_pred ccccccccCCCcccceeeEEEeeEEEEcCcEEEEccccccccccccCcCcceeeeeec
Confidence 1111 011 357999999999999999999999999 467899999987
No 36
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=98.97 E-value=1.1e-07 Score=102.94 Aligned_cols=277 Identities=15% Similarity=0.144 Sum_probs=182.5
Q ss_pred cHHHHHHHHHHhccc-----EEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEec
Q 009992 58 SSGNVLKWLAGNSTK-----RLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQH 132 (520)
Q Consensus 58 ~t~~~~~~lI~~Ak~-----sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d 132 (520)
.+|+..+++|++|-. .|.+. -|=+ .-...|.+||++||+.|-+|.+++.
T Consensus 352 eSF~~Vv~fl~qAA~DP~VLAIKqT-LYRt-------------------------~~dSpIV~ALi~AA~nGKqVtvlVE 405 (696)
T COG0855 352 ESFEPVVEFLRQAAADPDVLAIKQT-LYRT-------------------------SKDSPIVRALIDAAENGKQVTVLVE 405 (696)
T ss_pred hhhHHHHHHHHHhhcCCCeEEEEEE-EEec-------------------------CCCCHHHHHHHHHHHcCCeEEEEEE
Confidence 456778899999987 34443 3432 1136899999999999999999997
Q ss_pred CCC--C-CCcchhHHHHHcCCCCeEEEEeccccccCCCceeeEEEEE----cCc---EEEecccCCCcccccccccccEE
Q 009992 133 LGV--Y-PDFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWIS----DCR---DVYIGSANNDWKSLTQVKEVGIY 202 (520)
Q Consensus 133 ~g~--~-~~~~~~~~~L~~~~~gv~v~~~~~~~~~~~~~lH~K~~Vv----D~~---~~~iGSaN~d~~sl~~~~E~gv~ 202 (520)
-.. . ..+-.+++.|.. +||+|+. ...+.-.|+|+.+| |++ .+-+|+-|..-.+-.--.|+++.
T Consensus 406 LkARFDEE~NI~WAk~LE~--AGvhVvy-----G~~glKtHAKm~lVvRrE~~~lrrY~HlGTGNYn~~TAriYTD~sl~ 478 (696)
T COG0855 406 LKARFDEEANIHWAKRLER--AGVHVVY-----GVVGLKTHAKMLLVVRREGGKLRRYVHLGTGNYNPKTARLYTDLSLL 478 (696)
T ss_pred EhhhcChhhhhHHHHHHHh--CCcEEEe-----cccceeeeeeEEEEEEecCCcEEEEEEecCCCCCccceeeeeechhc
Confidence 411 1 122345678876 7998873 12356789999998 443 67789999987776666788888
Q ss_pred EECChHHHHHHHHHHHHHHhcCCCCCCccccccchhhhhccccCCCCcccCCCCCccCCCCCCCccCCCcCCCCccCCcc
Q 009992 203 LVGCPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQANRTVPCWSHFLDPKGRCRSPLPPVLEVPHVEGYPILSDPY 282 (520)
Q Consensus 203 i~~~~~la~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~ 282 (520)
.-+ +.+++|+.++|...-..+.+..
T Consensus 479 Tad-~~i~~Dv~~lFn~ltGy~~~~~------------------------------------------------------ 503 (696)
T COG0855 479 TAD-PEIGADVTDLFNFLTGYARPVR------------------------------------------------------ 503 (696)
T ss_pred cCC-HHHHHHHHHHHHHhcCCCcchh------------------------------------------------------
Confidence 866 9999999999985432221110
Q ss_pred cccccccCCCCCCCCCCCceeeeecCCCCCCCCCCcchHHHHHHHHhhcCCc--CEEEEEEeeeeeeeccccccccHHHH
Q 009992 283 MFRETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTR--ATLRISTMDWLGQSQYLKQTVYWSAL 360 (520)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~ls~sP~~~~~~~r~~~~~all~~I~~Ak~~--~~I~I~~~~y~P~~~~~~~~~~~~~i 360 (520)
+ .-+.-||.. -|...++.+-.-|..|+.+ -.|+.-+-.. .+ |.|
T Consensus 504 -----~--------------~~L~vsP~~----~r~~il~~I~~Ei~~a~~G~~a~I~~KmNsL------vD-----~~i 549 (696)
T COG0855 504 -----L--------------NKLLVSPFT----LRARILELIEREIAHAQAGKPARITLKMNSL------VD-----PQI 549 (696)
T ss_pred -----h--------------hhhhcCchh----HHHHHHHHHHHHHHHHhcCCCceEEEehhhc------cC-----HHH
Confidence 0 001124422 1223344554555556542 2344432111 11 789
Q ss_pred HHHHHHHHHcCCCEEEEEeccccCCCcChHHHHHHhhhccccccccCCCCCCCceeEEEEEcCCCCCCCCcccCCCCCCC
Q 009992 361 SSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGN 440 (520)
Q Consensus 361 ~~AL~~Aa~~RGV~VRILi~~~~~~~~~~~~~l~sL~~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~~~~~ 440 (520)
.+||.+|. +-||+|.++|-+..+-.|... .+ +.+|.|+-.. +
T Consensus 550 I~aLY~AS-~AGV~IdLIVRGiCcLrPgv~----gl---------------SeNIrV~SIV--G---------------- 591 (696)
T COG0855 550 IDALYRAS-QAGVQIDLIVRGICCLRPGVP----GL---------------SENIRVRSIV--G---------------- 591 (696)
T ss_pred HHHHHHHh-hcCCEEEEEEeeeeecCCCCC----Cc---------------CcceEEEeeh--h----------------
Confidence 99999998 899999999987543334320 01 2345554221 1
Q ss_pred CCCCcce-eecceeEEe----cCeEEEccCCCCcccccccCCeeeeecChhHHHHHHHHHHhhcc
Q 009992 441 IYPGFTR-VNHGKYAVS----DSRAHIGTSNLVWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWN 500 (520)
Q Consensus 441 ~~~~~~~-~lHaK~~Vi----D~~a~IGS~N~d~~sf~~n~e~~l~~~~~~~~~~l~~~F~~dw~ 500 (520)
+ .=|+.+... |..+||||+.|=.|-++.--|+.+=+.++...+.+.++++-.+.
T Consensus 592 ------RfLEHsRIyyF~ngg~~~vyisSADwM~RNLdrRVEv~~Pi~~~~~k~~l~~il~~~l~ 650 (696)
T COG0855 592 ------RFLEHSRIYYFHNGGDEEVYISSADWMPRNLDRRVEVLFPILDPRLKQVLLEILEILLD 650 (696)
T ss_pred ------hhhccceEEEEecCCcceEEEehhhcccccccceeEEEeecCchHHHHHHHHHHHHHhc
Confidence 2 247776665 36899999999999999999999988888888888888877664
No 37
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=98.95 E-value=1.5e-08 Score=101.33 Aligned_cols=140 Identities=21% Similarity=0.298 Sum_probs=104.1
Q ss_pred ccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHh-hCCCeEEEEecCCC
Q 009992 57 VSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAA-DRNVRVRLLQHLGV 135 (520)
Q Consensus 57 ~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa-~rGV~VrIl~d~g~ 135 (520)
.++.+...++|++|++-|-|.+=-|| +-+|+..|.+|+ +|||.|.||+|...
T Consensus 133 p~IKE~vR~~I~~A~kVIAIVMD~FT---------------------------D~dIf~DLleAa~kR~VpVYiLLD~~~ 185 (284)
T PF07894_consen 133 PHIKEVVRRMIQQAQKVIAIVMDVFT---------------------------DVDIFCDLLEAANKRGVPVYILLDEQN 185 (284)
T ss_pred CCHHHHHHHHHHHhcceeEEEeeccc---------------------------cHHHHHHHHHHHHhcCCcEEEEechhc
Confidence 46788999999999999999954452 367898899988 99999999999632
Q ss_pred CCCcchhHHHHH---cCCCCeEEEEecccccc------CCCceeeEEEEEcCcEEEecccCCCcccccccccccEEEECC
Q 009992 136 YPDFTTEASNLA---SGRKNVENVTLLLGDWW------GSGIVHAKVWISDCRDVYIGSANNDWKSLTQVKEVGIYLVGC 206 (520)
Q Consensus 136 ~~~~~~~~~~L~---~~~~gv~v~~~~~~~~~------~~~~lH~K~~VvD~~~~~iGSaN~d~~sl~~~~E~gv~i~~~ 206 (520)
.+.+-.....+. ....+++|+.+.-..++ -.|.+|.||++||++.+..||.-++|.+-..++.+..++.|
T Consensus 186 ~~~Fl~Mc~~~~v~~~~~~nmrVRsv~G~~y~~rsg~k~~G~~~eKF~lvD~~~V~~GSYSFtWs~~~~~r~~~~~~tG- 264 (284)
T PF07894_consen 186 LPHFLEMCEKLGVNLQHLKNMRVRSVTGCTYYSRSGKKFKGQLKEKFMLVDGDKVISGSYSFTWSSSRVHRNLVTVLTG- 264 (284)
T ss_pred ChHHHHHHHHCCCChhhcCCeEEEEecCCeeecCCCCeeeCcccceeEEEecccccccccceeecccccccceeEEEec-
Confidence 221111112221 12246777765421111 14789999999999999999999999998788888888888
Q ss_pred hHHHHHHHHHHHHHHhcCC
Q 009992 207 PTIAKKVEVYFENLWTLSS 225 (520)
Q Consensus 207 ~~la~~l~~~F~~~W~~~~ 225 (520)
++|..+.+.|......+.
T Consensus 265 -q~Ve~FD~EFR~LyA~S~ 282 (284)
T PF07894_consen 265 -QIVESFDEEFRELYAQSK 282 (284)
T ss_pred -cccchHhHHHHHHHHhcC
Confidence 899999999988876543
No 38
>PLN03008 Phospholipase D delta
Probab=98.87 E-value=3e-08 Score=111.16 Aligned_cols=164 Identities=17% Similarity=0.042 Sum_probs=98.5
Q ss_pred CCeEEEEEeccCCCC--CCCCC--------------CCCcccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCC
Q 009992 33 TKCKAWLVQSIPTDM--PHLPR--------------VPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYG 96 (520)
Q Consensus 33 ~~c~~~lv~s~P~~~--~~~~~--------------~~~~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~ 96 (520)
+++.+|++.|+..+. +++.. ..--.|+.++++++|++||+.|||++-||+-..- .-++..+.+
T Consensus 526 ~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~-~w~~~~~~~ 604 (868)
T PLN03008 526 ENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSY-AWPSYRDAG 604 (868)
T ss_pred CccccceeeecCchhhcCCCCCcchhhhhccccccccchhhhHHHHHHHHHHhhccEEEEehhhhhcccc-ccccccccc
Confidence 456788999998753 12110 0112467899999999999999999999952100 000001111
Q ss_pred CCcccccccCCCCCHHHHHHHHHHh--hCCCeEEEEecC--CCCC-Ccch-----------------hHHHHHcCCCCe-
Q 009992 97 YSEDDMKRFGAQEGFDVYKSIENAA--DRNVRVRLLQHL--GVYP-DFTT-----------------EASNLASGRKNV- 153 (520)
Q Consensus 97 ~~~~~~~~~~~~~g~~i~~aL~~aa--~rGV~VrIl~d~--g~~~-~~~~-----------------~~~~L~~~~~gv- 153 (520)
+. -..+.+|..+|.++. ..+-+|.|+++. ++.+ +... ..+.|++.+.+.
T Consensus 605 ~~--------n~I~~eia~kI~~ki~~~e~f~V~IViP~~peG~~~sg~vq~Il~wq~~TM~~~~~~I~~~L~~~~~d~~ 676 (868)
T PLN03008 605 AD--------NLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDPKSGPVQEILYWQSQTMQMMYDVIAKELKAVQSDAH 676 (868)
T ss_pred cc--------cchhHHHHHHHHHHHhCCCCCEEEEEECCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 11 134577888887764 567889999985 2111 1110 022343311111
Q ss_pred -----EEEEec----------ccc--ccC--------CCceeeEEEEEcCcEEEecccCCCcccccc--cccccEEEEC
Q 009992 154 -----ENVTLL----------LGD--WWG--------SGIVHAKVWISDCRDVYIGSANNDWKSLTQ--VKEVGIYLVG 205 (520)
Q Consensus 154 -----~v~~~~----------~~~--~~~--------~~~lH~K~~VvD~~~~~iGSaN~d~~sl~~--~~E~gv~i~~ 205 (520)
.++.+. ... .+. .-.+|+|++|||++++.|||+||+.||+.. +.|+++.++.
T Consensus 677 p~dyl~fy~L~~~e~~~~~~~~~~~~~~~~a~~~rr~~IYvHsK~~ivDd~~~~iGSaN~n~RS~~~~Rd~E~~~~~~~ 755 (868)
T PLN03008 677 PLDYLNFYCLGKREQLPDDMPATNGSVVSDSYNFQRFMIYVHAKGMIVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQ 755 (868)
T ss_pred ccCEEEEecccccccccCCCCCCCCchhhhhhhccceeEEEeeeEEEECCCEEEEeccccCHhhccCCCCceEeEEecc
Confidence 222110 000 000 135899999999999999999999999986 8999988874
No 39
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=98.79 E-value=2.2e-08 Score=111.86 Aligned_cols=156 Identities=22% Similarity=0.106 Sum_probs=94.7
Q ss_pred EEEEEeccCCCCC------------CCCCCCCcccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCccccc
Q 009992 36 KAWLVQSIPTDMP------------HLPRVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMK 103 (520)
Q Consensus 36 ~~~lv~s~P~~~~------------~~~~~~~~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~ 103 (520)
..|+..|+|.+-- ......--.|+-+|++.+|++||+.|||+.-||.- ..++ .+..
T Consensus 532 ~~q~f~si~~gs~~~~qvlrs~g~wS~g~~~~e~SIq~AYv~~Ir~a~hFIYIENQfFi~-ss~~----~~~~------- 599 (887)
T KOG1329|consen 532 HVQVFRSIDGGSVAGPQVLRSAGLWSGGINEIEDSIQNAYVKAIRNAEHFIYIENQFFIG-SSFN----WDSV------- 599 (887)
T ss_pred cccceeeccCCcccchHHhhhhcccccCCCchHHHHHHHHHHHHHhccceEEEeeeeEEe-eccC----CCcc-------
Confidence 4677888876531 11111112578899999999999999999999942 1111 0100
Q ss_pred ccCCCCCHHHHHHHHHHhhCC--CeEEEEecC-----CC-CCCcch------------------hHHHHHc-CCCCeEEE
Q 009992 104 RFGAQEGFDVYKSIENAADRN--VRVRLLQHL-----GV-YPDFTT------------------EASNLAS-GRKNVENV 156 (520)
Q Consensus 104 ~~~~~~g~~i~~aL~~aa~rG--V~VrIl~d~-----g~-~~~~~~------------------~~~~L~~-~~~gv~v~ 156 (520)
....+++|...+.+|.+.| -+|.|+++- |. .+.... ..+.|++ +..+.++.
T Consensus 600 --~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~p~~~svqaIl~wQyrTms~g~~sI~~~Lka~g~d~~~yi 677 (887)
T KOG1329|consen 600 --LNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDTPGSGSVQAILHWQYRTMSMGYKSIYKALKAVGLDPADYI 677 (887)
T ss_pred --cchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCCCCcchHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccc
Confidence 1245678888888887666 678888864 21 111110 0223443 11222222
Q ss_pred E-eccccccC----C-------CceeeEEEEEcCcEEEecccCCCcccccccc--cccEEEEC
Q 009992 157 T-LLLGDWWG----S-------GIVHAKVWISDCRDVYIGSANNDWKSLTQVK--EVGIYLVG 205 (520)
Q Consensus 157 ~-~~~~~~~~----~-------~~lH~K~~VvD~~~~~iGSaN~d~~sl~~~~--E~gv~i~~ 205 (520)
. +.+.++-. . -..|+|+||||++++.|||||++.||+..++ |+++.+++
T Consensus 678 ~f~~lr~~g~~e~~~~~~~~emIYVHsK~mIvDD~~vIIGSANINqRSm~G~RDSEIA~~~~d 740 (887)
T KOG1329|consen 678 DFLGLRCLGNREEQAQRLRREMIYVHSKLMIVDDEYVIIGSANINQRSMLGNRDSEIAMGIYD 740 (887)
T ss_pred eeeeeeeeeccccccccceEEEEEEeeeeEEecCCEEEEeecccchhhccCCccceeEEEEec
Confidence 1 12221110 1 1479999999999999999999999998765 56777777
No 40
>PLN02270 phospholipase D alpha
Probab=98.74 E-value=5.3e-08 Score=109.10 Aligned_cols=166 Identities=19% Similarity=0.091 Sum_probs=96.9
Q ss_pred CCCCeEEEEEeccCCCC--CCCCC--------------CCCcccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCC
Q 009992 31 SRTKCKAWLVQSIPTDM--PHLPR--------------VPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGD 94 (520)
Q Consensus 31 ~~~~c~~~lv~s~P~~~--~~~~~--------------~~~~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d 94 (520)
....|.+|++.|++.+. +++.. .....++..+++++|++||++|+|++.||.-. +---+.+
T Consensus 456 d~~~w~VQvfRSid~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~aYi~AI~~A~~~IYIENQYF~ss---s~~w~~~ 532 (808)
T PLN02270 456 DHEVWNVQLFRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLGS---SFAWSAD 532 (808)
T ss_pred cCCccccceeecccchhhccCCCCcchhhhcceeccCCCchhhHHHHHHHHHHHhhhhEEEeehhhhhhh---hhhhccc
Confidence 44578899999998653 11110 01136789999999999999999999999521 0000000
Q ss_pred CCCCcccccccCCCCCHHHHHHHHHHh--hCCCeEEEEecC--CCCCCcc-----------h-------hHHHHHcCCCC
Q 009992 95 YGYSEDDMKRFGAQEGFDVYKSIENAA--DRNVRVRLLQHL--GVYPDFT-----------T-------EASNLASGRKN 152 (520)
Q Consensus 95 ~~~~~~~~~~~~~~~g~~i~~aL~~aa--~rGV~VrIl~d~--g~~~~~~-----------~-------~~~~L~~~~~g 152 (520)
+....+ .-..-..+.+|..+|.++. ..+-+|.|+++. ++.+... + ..+.|++ +|
T Consensus 533 -~~~~~~-~~~~nlIp~el~~kI~~ri~~~e~f~VyIViP~~peG~~e~~~vq~il~wq~~TM~~~~~~I~~~Lk~--~g 608 (808)
T PLN02270 533 -GIKPED-INALHLIPKELSLKIVSKIEAGEKFTVYVVVPMWPEGIPESGSVQAILDWQRRTMEMMYKDVIQALRA--KG 608 (808)
T ss_pred -cccccc-ccccccchHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH--cC
Confidence 000000 0000134567788887764 567899999986 2222111 0 0233443 23
Q ss_pred e--------EEEEec-----c-cccc-----------------C--CCceeeEEEEEcCcEEEecccCCCccccc--ccc
Q 009992 153 V--------ENVTLL-----L-GDWW-----------------G--SGIVHAKVWISDCRDVYIGSANNDWKSLT--QVK 197 (520)
Q Consensus 153 v--------~v~~~~-----~-~~~~-----------------~--~~~lH~K~~VvD~~~~~iGSaN~d~~sl~--~~~ 197 (520)
+ .++.+. . ..+. . .-++|+|++|||++++.|||+|++.||+. ...
T Consensus 609 ~~~dp~dyL~ff~L~nre~~~~g~~~P~~~~~~~~~~~~aq~~rr~~I~vH~K~~ivDd~~~~iGSaN~n~rS~~G~rDS 688 (808)
T PLN02270 609 LEEDPRNYLTFFCLGNREVKKSGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDS 688 (808)
T ss_pred ccCCccceEEEEeccccccccCcccCCccCCcccchhhhhhhccceeEEEeeeEEEEcCCEEEEeccccccccccCCccc
Confidence 3 122110 0 0000 0 13689999999999999999999999998 456
Q ss_pred cccEEE
Q 009992 198 EVGIYL 203 (520)
Q Consensus 198 E~gv~i 203 (520)
|+.+..
T Consensus 689 EIam~a 694 (808)
T PLN02270 689 EIAMGG 694 (808)
T ss_pred hhhhcc
Confidence 666543
No 41
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=98.63 E-value=3.1e-08 Score=64.88 Aligned_cols=27 Identities=48% Similarity=0.657 Sum_probs=24.9
Q ss_pred CCceeeEEEEEcCcEEEecccCCCccc
Q 009992 166 SGIVHAKVWISDCRDVYIGSANNDWKS 192 (520)
Q Consensus 166 ~~~lH~K~~VvD~~~~~iGSaN~d~~s 192 (520)
.+++|+|++|||++.++|||+||+++|
T Consensus 2 ~~~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 2 DGVLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred CCcEEeEEEEEcCCEEEEeCccCCCCC
Confidence 468999999999999999999999875
No 42
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=98.63 E-value=3.1e-07 Score=86.02 Aligned_cols=133 Identities=22% Similarity=0.237 Sum_probs=102.3
Q ss_pred chHHHHHHHHhhcCCcCEEEEEEeeeeeeeccccccccHHHHHHHHHHHHHcCCCEEEEEeccc-cCCCcChHHHHHHhh
Q 009992 319 ADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYW-AHFINNTDEYLKSLL 397 (520)
Q Consensus 319 ~~~~all~~I~~Ak~~~~I~I~~~~y~P~~~~~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~~-~~~~~~~~~~l~sL~ 397 (520)
..+..+.+.|..|+ ++.|++ .|+-.+ .. ..+.+.|.++. ++||++|||.+.- .-++|. +++.|.
T Consensus 39 ~il~~Li~~l~k~~---ef~IsV-aFit~s-G~------sll~~~L~d~~-~Kgvkgkilts~YlnfTdP~---al~~Ll 103 (198)
T COG3886 39 KILPRLIDELEKAD---EFEISV-AFITES-GL------SLLFDLLLDLV-NKGVKGKILTSDYLNFTDPV---ALRKLL 103 (198)
T ss_pred hHHHHHHHHHhcCC---eEEEEE-EEeeCc-cH------HHHHHHHHHHh-cCCceEEEecccccCccCHH---HHHHHH
Confidence 35788999999998 467887 465432 11 46888999987 9999999999864 345774 455554
Q ss_pred hccccccccCCCCCCCceeEEEEEcCCCCCCCCcccCCCCCCCCCCCcceeecceeEEec----CeEEEccCCCCccccc
Q 009992 398 YSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSD----SRAHIGTSNLVWDYFY 473 (520)
Q Consensus 398 ~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lHaK~~ViD----~~a~IGS~N~d~~sf~ 473 (520)
.+ .++++|++..|. .-+|.|-.|.. -.++|||+|++...|.
T Consensus 104 ~~-------------~nve~r~~~~~~----------------------~~fH~KgYiFe~~~~~taiiGSsNlt~sALt 148 (198)
T COG3886 104 ML-------------KNVELRVSTIGS----------------------ANFHTKGYIFEHNTGITAIIGSSNLTDSALT 148 (198)
T ss_pred hh-------------hccceEEEecCc----------------------cccccceeEEEecceEEEEEccchhhhhhcc
Confidence 31 358999998642 35799977764 2599999999999999
Q ss_pred ccCCeeee---ecChhHHHHHHHHHHhhccC
Q 009992 474 TTAGVSFG---TYNPAIVSQLQEIFDADWNS 501 (520)
Q Consensus 474 ~n~e~~l~---~~~~~~~~~l~~~F~~dw~s 501 (520)
.|.|.++- ..++.++.++...|++.|..
T Consensus 149 ~n~Ewn~k~s~~~~g~i~~~~k~~f~r~~~~ 179 (198)
T COG3886 149 VNEEWNLKVSSSKNGDIVKEVKVTFERQFQN 179 (198)
T ss_pred cCHHHHhhhccccccchHHHHHHHHHHHHHh
Confidence 99999985 45788999999999999983
No 43
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.40 E-value=1.4e-07 Score=61.59 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=17.7
Q ss_pred CceeeEEEEEcCcEEEecccCCCccc
Q 009992 167 GIVHAKVWISDCRDVYIGSANNDWKS 192 (520)
Q Consensus 167 ~~lH~K~~VvD~~~~~iGSaN~d~~s 192 (520)
+..|+|+||||++++|+||+||++++
T Consensus 3 ~~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 3 GSHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp BEE---EEEETTTEEEEE---SSHHH
T ss_pred cceeeEEEEEcCCEEEECceecCCCC
Confidence 67999999999999999999998753
No 44
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=98.36 E-value=2.9e-07 Score=60.25 Aligned_cols=25 Identities=36% Similarity=0.315 Sum_probs=22.7
Q ss_pred eeecceeEEec-CeEEEccCCCCccc
Q 009992 447 RVNHGKYAVSD-SRAHIGTSNLVWDY 471 (520)
Q Consensus 447 ~~lHaK~~ViD-~~a~IGS~N~d~~s 471 (520)
+++|+|++|+| ++++|||+||+++|
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccCCCCC
Confidence 58999999999 68999999999875
No 45
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=98.35 E-value=1.9e-05 Score=79.21 Aligned_cols=147 Identities=14% Similarity=0.168 Sum_probs=98.9
Q ss_pred chHHHHHHHHhhcCCcCEEEEEEeeeeeeeccccccccHHHHHHHHHHHHHcCCCEEEEEeccccCCCcChHHHHHHhhh
Q 009992 319 ADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLY 398 (520)
Q Consensus 319 ~~~~all~~I~~Ak~~~~I~I~~~~y~P~~~~~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~~~~~~~~~~~~l~sL~~ 398 (520)
...+.+-.+|++|+| -|-|. |+- +++ .+|..-|.+||.+|||-|=||++..+ ...||..-..
T Consensus 134 ~IKE~vR~~I~~A~k--VIAIV-MD~-----FTD-----~dIf~DLleAa~kR~VpVYiLLD~~~-----~~~Fl~Mc~~ 195 (284)
T PF07894_consen 134 HIKEVVRRMIQQAQK--VIAIV-MDV-----FTD-----VDIFCDLLEAANKRGVPVYILLDEQN-----LPHFLEMCEK 195 (284)
T ss_pred CHHHHHHHHHHHhcc--eeEEE-eec-----ccc-----HHHHHHHHHHHHhcCCcEEEEechhc-----ChHHHHHHHH
Confidence 467888999999999 66665 553 344 57777888988899999999998742 2356655443
Q ss_pred ccccccccCCCCCCCceeEEEEEcCCCCCCCCcccCCCCCCCCCCCcceeecceeEEec-CeEEEccCCCCcccccccCC
Q 009992 399 SNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSD-SRAHIGTSNLVWDYFYTTAG 477 (520)
Q Consensus 399 ~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lHaK~~ViD-~~a~IGS~N~d~~sf~~n~e 477 (520)
+. +.. ....++-||... +.. +. ...|. -|.+.+|.|||++| +.|.-||.-|+|.+-..+..
T Consensus 196 ~~-v~~-----~~~~nmrVRsv~--G~~----y~---~rsg~---k~~G~~~eKF~lvD~~~V~~GSYSFtWs~~~~~r~ 257 (284)
T PF07894_consen 196 LG-VNL-----QHLKNMRVRSVT--GCT----YY---SRSGK---KFKGQLKEKFMLVDGDKVISGSYSFTWSSSRVHRN 257 (284)
T ss_pred CC-CCh-----hhcCCeEEEEec--CCe----ee---cCCCC---eeeCcccceeEEEecccccccccceeecccccccc
Confidence 21 110 012346666443 211 11 11122 23578999999999 89999999999998888887
Q ss_pred eeeeecChhHHHHHHHHHHhhccCC
Q 009992 478 VSFGTYNPAIVSQLQEIFDADWNSP 502 (520)
Q Consensus 478 ~~l~~~~~~~~~~l~~~F~~dw~s~ 502 (520)
+..++ .++++..+...|...+..+
T Consensus 258 ~~~~~-tGq~Ve~FD~EFR~LyA~S 281 (284)
T PF07894_consen 258 LVTVL-TGQIVESFDEEFRELYAQS 281 (284)
T ss_pred eeEEE-eccccchHhHHHHHHHHhc
Confidence 65544 4667888888887766543
No 46
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=98.02 E-value=0.0006 Score=70.58 Aligned_cols=134 Identities=16% Similarity=0.162 Sum_probs=85.4
Q ss_pred cHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhC--CCeEEEEecC--
Q 009992 58 SSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADR--NVRVRLLQHL-- 133 (520)
Q Consensus 58 ~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~r--GV~VrIl~d~-- 133 (520)
..|+.+.+.|.+||++|.|++-|. + ...+++.+-|..|... ..+|.|++|.
T Consensus 39 ~fy~~lk~~I~~aq~Ri~lasLYl---G----------------------~~E~elv~cl~~aL~~~~~L~v~iLlD~~r 93 (469)
T KOG3964|consen 39 EFYQRLKKLIKKAQRRIFLASLYL---G----------------------KLERELVDCLSNALEKNPSLKVSILLDFLR 93 (469)
T ss_pred HHHHHHHHHHHHhhheeeeeeecc---c----------------------hhHHHHHHHHHHHhccCCCcEEEeehhhhh
Confidence 468899999999999999999999 2 2357899999988765 5889999995
Q ss_pred CCCC--Ccchh--HHHHHc-CCCCeEEE--Eec----------cccc-cCCCceeeEEEEEcCcEEEecccCCCcccccc
Q 009992 134 GVYP--DFTTE--ASNLAS-GRKNVENV--TLL----------LGDW-WGSGIVHAKVWISDCRDVYIGSANNDWKSLTQ 195 (520)
Q Consensus 134 g~~~--~~~~~--~~~L~~-~~~gv~v~--~~~----------~~~~-~~~~~lH~K~~VvD~~~~~iGSaN~d~~sl~~ 195 (520)
|... ...+. .-.+.. .-..|+.. ..+ +.++ .+-|.-|.|+.-+|+++ .+.|+|+....++.
T Consensus 94 gtr~~~~~~s~llp~~l~kkf~e~vd~~lyhtp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fddev-iiSGanls~dyfTN 172 (469)
T KOG3964|consen 94 GTRELPNSCSALLPVWLGKKFPERVDESLYHTPFLRGLSKSLVPARFNEGLGLQHMKIYGFDDEV-IISGANLSNDYFTN 172 (469)
T ss_pred hcccCcccchhhchHHHhhhhhhhhceeeecChhhhhhhhhcCchhhccccchhhhhhhcccHhh-hcccccchhhhhcc
Confidence 3321 11111 101211 11123222 111 1112 24578999999999985 67889998777766
Q ss_pred cccccEEEECChHHHHHHHHHHH
Q 009992 196 VKEVGIYLVGCPTIAKKVEVYFE 218 (520)
Q Consensus 196 ~~E~gv~i~~~~~la~~l~~~F~ 218 (520)
..+--..+.+ ..+|.-+.+.-+
T Consensus 173 Rqdry~L~sd-r~~adF~f~l~d 194 (469)
T KOG3964|consen 173 RQDRYYLFSD-RRLADFYFKLHD 194 (469)
T ss_pred ccceeEEEec-ccHHHHHHHHHH
Confidence 6554455544 666655544433
No 47
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=98.01 E-value=9.1e-05 Score=69.67 Aligned_cols=136 Identities=21% Similarity=0.089 Sum_probs=95.9
Q ss_pred ccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCC-HHHHHHHHHHhhCCCeEEEEecCCC
Q 009992 57 VSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEG-FDVYKSIENAADRNVRVRLLQHLGV 135 (520)
Q Consensus 57 ~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g-~~i~~aL~~aa~rGV~VrIl~d~g~ 135 (520)
+...+.+++.|+.|++...+.+|.- ..| .-+++.|.++..+||++||+++.-.
T Consensus 38 e~il~~Li~~l~k~~ef~IsVaFit--------------------------~sG~sll~~~L~d~~~Kgvkgkilts~Yl 91 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVAFIT--------------------------ESGLSLLFDLLLDLVNKGVKGKILTSDYL 91 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEEEee--------------------------CccHHHHHHHHHHHhcCCceEEEeccccc
Confidence 3566788899999998776664443 123 5677899999999999999998611
Q ss_pred CCCcchhHHHHHcCCCCeEEEEeccccccCCCceeeEEEEE---cCcEEEecccCCCcccccccccccEEEECC--hHHH
Q 009992 136 YPDFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWIS---DCRDVYIGSANNDWKSLTQVKEVGIYLVGC--PTIA 210 (520)
Q Consensus 136 ~~~~~~~~~~L~~~~~gv~v~~~~~~~~~~~~~lH~K~~Vv---D~~~~~iGSaN~d~~sl~~~~E~gv~i~~~--~~la 210 (520)
.-..+.....|... .+|+++... .+..-+|.|-.|. ++-.+++||.|++...|+.|.|..+.+... ..++
T Consensus 92 nfTdP~al~~Ll~~-~nve~r~~~----~~~~~fH~KgYiFe~~~~~taiiGSsNlt~sALt~n~Ewn~k~s~~~~g~i~ 166 (198)
T COG3886 92 NFTDPVALRKLLML-KNVELRVST----IGSANFHTKGYIFEHNTGITAIIGSSNLTDSALTVNEEWNLKVSSSKNGDIV 166 (198)
T ss_pred CccCHHHHHHHHhh-hccceEEEe----cCccccccceeEEEecceEEEEEccchhhhhhcccCHHHHhhhccccccchH
Confidence 11222334444421 245555332 1335678888876 444689999999999999999998877432 4689
Q ss_pred HHHHHHHHHHHhc
Q 009992 211 KKVEVYFENLWTL 223 (520)
Q Consensus 211 ~~l~~~F~~~W~~ 223 (520)
..+...|+..|..
T Consensus 167 ~~~k~~f~r~~~~ 179 (198)
T COG3886 167 KEVKVTFERQFQN 179 (198)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999983
No 48
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=97.85 E-value=0.0001 Score=80.41 Aligned_cols=130 Identities=20% Similarity=0.239 Sum_probs=93.7
Q ss_pred HHHHHHHHhhcCCc---CEEEEEEeeeeeeeccccccccHHHHHHHHHHHHHcCCCEEEEEeccccCCCc-ChHHHHHHh
Q 009992 321 EQAWVDTIKSVGTR---ATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFIN-NTDEYLKSL 396 (520)
Q Consensus 321 ~~all~~I~~Ak~~---~~I~I~~~~y~P~~~~~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~~~~~~~-~~~~~l~sL 396 (520)
-+.++++|.+|-.- ..|.+.. | +.+++ ..|.+||++|| +.|-+|.+||.-+...|. .-..+.+.|
T Consensus 354 F~~Vv~fl~qAA~DP~VLAIKqTL-Y-----Rt~~d----SpIV~ALi~AA-~nGKqVtvlVELkARFDEE~NI~WAk~L 422 (696)
T COG0855 354 FEPVVEFLRQAAADPDVLAIKQTL-Y-----RTSKD----SPIVRALIDAA-ENGKQVTVLVELKARFDEEANIHWAKRL 422 (696)
T ss_pred hHHHHHHHHHhhcCCCeEEEEEEE-E-----ecCCC----CHHHHHHHHHH-HcCCeEEEEEEEhhhcChhhhhHHHHHH
Confidence 46789999988751 0122221 1 11222 57999999999 899999999987654443 334778887
Q ss_pred hhccccccccCCCCCCCceeEEEEEcCCCCCCCCcccCCCCCCCCCCCcceeecceeEE-e---c----CeEEEccCCCC
Q 009992 397 LYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAV-S---D----SRAHIGTSNLV 468 (520)
Q Consensus 397 ~~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lHaK~~V-i---D----~~a~IGS~N~d 468 (520)
.+ .++.| +|-+++ -..|||+++ + | .+|++||.|+.
T Consensus 423 E~--------------AGvhV-vyG~~g----------------------lKtHAKm~lVvRrE~~~lrrY~HlGTGNYn 465 (696)
T COG0855 423 ER--------------AGVHV-VYGVVG----------------------LKTHAKMLLVVRREGGKLRRYVHLGTGNYN 465 (696)
T ss_pred Hh--------------CCcEE-Eecccc----------------------eeeeeeEEEEEEecCCcEEEEEEecCCCCC
Confidence 63 23444 344332 468999874 4 2 37999999999
Q ss_pred cccccccCCeeeeecChhHHHHHHHHHHhh
Q 009992 469 WDYFYTTAGVSFGTYNPAIVSQLQEIFDAD 498 (520)
Q Consensus 469 ~~sf~~n~e~~l~~~~~~~~~~l~~~F~~d 498 (520)
...-..-..+++..-|+++++.+.++|.-.
T Consensus 466 ~~TAriYTD~sl~Tad~~i~~Dv~~lFn~l 495 (696)
T COG0855 466 PKTARLYTDLSLLTADPEIGADVTDLFNFL 495 (696)
T ss_pred ccceeeeeechhccCCHHHHHHHHHHHHHh
Confidence 999988999999999999999999999854
No 49
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=97.72 E-value=5.8e-05 Score=74.60 Aligned_cols=125 Identities=17% Similarity=0.147 Sum_probs=73.9
Q ss_pred cccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 009992 56 IVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHLGV 135 (520)
Q Consensus 56 ~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d~g~ 135 (520)
..++.+.+.++|++|+++|.|+.+.- .-..+.++|.+|.+|||+|.+++.. .
T Consensus 8 ~~~I~~~i~elI~~Ae~eI~is~~~~---------------------------~l~~l~~~L~~a~~rGV~V~li~~~-~ 59 (233)
T PF11495_consen 8 RETILERIRELIENAESEIYISIPPE---------------------------FLEELRDELEEAVDRGVKVKLIVFG-E 59 (233)
T ss_dssp HHHHHHHHHHHHHC-SSEEEEEE-GG---------------------------GHHHHHHHHHHHHHTT-EEEEEESS--
T ss_pred HHHHHHHHHHHHHHhheEEEEEcCHH---------------------------HHHHHHHHHHHHHHCCCEEEEEEeC-C
Confidence 45677888999999999999995432 2368999999999999999999974 1
Q ss_pred CCCcchhHHHHHcCCCCe-EEEEeccccccCCCceeeEEEEEcCcEEEecccCCCcccccccccccEEEECChHHHHHHH
Q 009992 136 YPDFTTEASNLASGRKNV-ENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANNDWKSLTQVKEVGIYLVGCPTIAKKVE 214 (520)
Q Consensus 136 ~~~~~~~~~~L~~~~~gv-~v~~~~~~~~~~~~~lH~K~~VvD~~~~~iGSaN~d~~sl~~~~E~gv~i~~~~~la~~l~ 214 (520)
.+ . ....... ... +++. ...-|.-++|+|++.+++++..+. -....+.++.+.+ +.++.-+.
T Consensus 60 ~~--~--~~~~~~~-~~~~~vr~--------~~~~~~~~~ivD~~~~l~~~~~~~---~~~~~~~ai~~~~-~~L~~~~~ 122 (233)
T PF11495_consen 60 DP--D--PEEFEYH-GNATEVRV--------RRGGRPFMVIVDRKEALFAPSDML---SSDSEEYAIWFND-PELIFMFM 122 (233)
T ss_dssp --------GGGTTS-SEEEEEE---------S---S-EEEEETTTEEEEETTTTT---EEEE--HHHHHHH-HHHHHHH-
T ss_pred CC--C--chhhhhc-ccccEEEE--------ecCCCcEEEEEECCEEEEEecccc---ccCCccEEEEEeC-HHHHHHHh
Confidence 11 1 1111111 122 2221 112235679999999999988765 2344556777765 88999998
Q ss_pred HHHHHH-HhcCC
Q 009992 215 VYFENL-WTLSS 225 (520)
Q Consensus 215 ~~F~~~-W~~~~ 225 (520)
..|... |..+.
T Consensus 123 ~~F~~~~W~~a~ 134 (233)
T PF11495_consen 123 GYFYTNLWPTAE 134 (233)
T ss_dssp -------HHC-E
T ss_pred hhcccccCCCce
Confidence 888877 98654
No 50
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=97.65 E-value=3e-05 Score=50.65 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=16.3
Q ss_pred eeecceeEEec-CeEEEccCCCCccc
Q 009992 447 RVNHGKYAVSD-SRAHIGTSNLVWDY 471 (520)
Q Consensus 447 ~~lHaK~~ViD-~~a~IGS~N~d~~s 471 (520)
..+|.|++|+| +.++||+.||+.++
T Consensus 3 ~~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 3 GSHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp BEE---EEEETTTEEEEE---SSHHH
T ss_pred cceeeEEEEEcCCEEEECceecCCCC
Confidence 57999999998 89999999998764
No 51
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=97.57 E-value=0.0002 Score=70.74 Aligned_cols=126 Identities=13% Similarity=0.155 Sum_probs=74.1
Q ss_pred CCcchHHHHHHHHhhcCCcCEEEEEEeeeeeeeccccccccHHHHHHHHHHHHHcCCCEEEEEeccccCCCcChHHHHHH
Q 009992 316 KYMADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKS 395 (520)
Q Consensus 316 ~r~~~~~all~~I~~Ak~~~~I~I~~~~y~P~~~~~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~~~~~~~~~~~~l~s 395 (520)
++...++.+.++|++|++ +|+|+++. +..+.+.++|.+|. +|||+|.+++.+ ...++..
T Consensus 7 g~~~I~~~i~elI~~Ae~--eI~is~~~-----------~~l~~l~~~L~~a~-~rGV~V~li~~~-~~~~~~~------ 65 (233)
T PF11495_consen 7 GRETILERIRELIENAES--EIYISIPP-----------EFLEELRDELEEAV-DRGVKVKLIVFG-EDPDPEE------ 65 (233)
T ss_dssp SHHHHHHHHHHHHHC-SS--EEEEEE-G-----------GGHHHHHHHHHHHH-HTT-EEEEEESS------GG------
T ss_pred CHHHHHHHHHHHHHHhhe--EEEEEcCH-----------HHHHHHHHHHHHHH-HCCCEEEEEEeC-CCCCchh------
Confidence 344567888999999999 99999742 23378999999987 999999999987 1111110
Q ss_pred hhhccccccccCCCCCCCceeEEEEEcCCCCCCCCcccCCCCCCCCCCCcceeecceeEEec-CeEEEccCCCCcccccc
Q 009992 396 LLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSD-SRAHIGTSNLVWDYFYT 474 (520)
Q Consensus 396 L~~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lHaK~~ViD-~~a~IGS~N~d~~sf~~ 474 (520)
.. . ......+|... ..|--++|+| +.+++++.... -..
T Consensus 66 ~~----~--------~~~~~~vr~~~--------------------------~~~~~~~ivD~~~~l~~~~~~~---~~~ 104 (233)
T PF11495_consen 66 FE----Y--------HGNATEVRVRR--------------------------GGRPFMVIVDRKEALFAPSDML---SSD 104 (233)
T ss_dssp GT----T--------SSEEEEEE-S-----------------------------S-EEEEETTTEEEEETTTTT---EEE
T ss_pred hh----h--------cccccEEEEec--------------------------CCCcEEEEEECCEEEEEecccc---ccC
Confidence 00 0 01113344322 1222246778 88999988765 455
Q ss_pred cCCeeeeecChhHHHHHHHHHHhh-ccCCC
Q 009992 475 TAGVSFGTYNPAIVSQLQEIFDAD-WNSPY 503 (520)
Q Consensus 475 n~e~~l~~~~~~~~~~l~~~F~~d-w~s~y 503 (520)
+.+.++.+.+++++.-+...|..- |..+.
T Consensus 105 ~~~~ai~~~~~~L~~~~~~~F~~~~W~~a~ 134 (233)
T PF11495_consen 105 SEEYAIWFNDPELIFMFMGYFYTNLWPTAE 134 (233)
T ss_dssp E--HHHHHHHHHHHHHH--------HHC-E
T ss_pred CccEEEEEeCHHHHHHHhhhcccccCCCce
Confidence 677888899999999999999888 97643
No 52
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=97.49 E-value=0.00039 Score=71.52 Aligned_cols=132 Identities=23% Similarity=0.275 Sum_probs=83.5
Q ss_pred HHHHHHHhhcCC---cCEEEEEEeeeeeeeccccccccHHHHHHHHHHHHHcCCCEEEEEeccccCCCcC-hHHHHHHhh
Q 009992 322 QAWVDTIKSVGT---RATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINN-TDEYLKSLL 397 (520)
Q Consensus 322 ~all~~I~~Ak~---~~~I~I~~~~y~P~~~~~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~~~~~~~~-~~~~l~sL~ 397 (520)
+.++++|++|-. -..|.|+. | +-... ..|.+||++|| +.|-+|.+++.-+...|.. -..|.+.|.
T Consensus 21 ~~vv~fl~eAA~DP~V~aIk~TL-Y-----R~a~~----S~iv~aLi~AA-~nGK~Vtv~vELkARFDEe~Ni~Wa~~Le 89 (352)
T PF13090_consen 21 DPVVDFLREAAEDPDVLAIKITL-Y-----RVASN----SPIVNALIEAA-ENGKQVTVLVELKARFDEENNIHWAKRLE 89 (352)
T ss_dssp CHHHHHHHHHCC-TTEEEEEEEE-S-----SS-TT-----HHHHHHHHHH-HTT-EEEEEESTTSSSTTCCCCCCCHHHH
T ss_pred HHHHHHHHHHhcCCCccEEEEEE-E-----ecCCC----CHHHHHHHHHH-HcCCEEEEEEEEeccccHHHHhHHHhhHH
Confidence 467778887742 12455553 1 11111 57999999999 8999999999876544431 113444554
Q ss_pred hccccccccCCCCCCCceeEEEEEcCCCCCCCCcccCCCCCCCCCCCcceeecceeEEe---c-----CeEEEccCCCCc
Q 009992 398 YSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVS---D-----SRAHIGTSNLVW 469 (520)
Q Consensus 398 ~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lHaK~~Vi---D-----~~a~IGS~N~d~ 469 (520)
+ .++.| +|-+|+ -..|+|+.++ + .++++||.||..
T Consensus 90 ~--------------aGv~V-iyG~~g----------------------lKvHaK~~lI~R~e~~~~~~Y~hlgTGNyNe 132 (352)
T PF13090_consen 90 E--------------AGVHV-IYGVPG----------------------LKVHAKICLIVRREGGGLRRYAHLGTGNYNE 132 (352)
T ss_dssp H--------------CT-EE-EE--TT-----------------------EE--EEEEEEEEETTEEEEEEEEESS-SST
T ss_pred h--------------cCeEE-EcCCCC----------------------hhheeeEEEEEEEeCCcEEEEEEEcCCCcCc
Confidence 2 23433 344443 3689998754 2 379999999998
Q ss_pred ccccccCCeeeeecChhHHHHHHHHHHhhccC
Q 009992 470 DYFYTTAGVSFGTYNPAIVSQLQEIFDADWNS 501 (520)
Q Consensus 470 ~sf~~n~e~~l~~~~~~~~~~l~~~F~~dw~s 501 (520)
..-..-...++..-++++..++.++|...-..
T Consensus 133 ~TAr~YtD~~l~Ta~~~i~~D~~~~F~~l~~~ 164 (352)
T PF13090_consen 133 KTARIYTDLSLFTADPEIGADVAKLFNYLTGY 164 (352)
T ss_dssp THCCCEEEEEEEE--HHHHHHHHHHHHHHCTT
T ss_pred cchhheecceeecCCHHHHHHHHHHHHHHhCC
Confidence 88888888999999999999999999988543
No 53
>PF13918 PLDc_3: PLD-like domain
Probab=97.36 E-value=0.0012 Score=62.27 Aligned_cols=74 Identities=20% Similarity=0.137 Sum_probs=48.3
Q ss_pred EeccCCCCCCCCCCCCcccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHH
Q 009992 40 VQSIPTDMPHLPRVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIEN 119 (520)
Q Consensus 40 v~s~P~~~~~~~~~~~~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~ 119 (520)
+.+.|..+... +--.-.++++..|+.||++|+|+-+-+..... .+... .=-..|-+||++
T Consensus 68 ~SsSPp~~~~~----gRT~DldAIl~~I~~A~~fI~IsVMdY~P~~~----~~~~~------------~YWP~ID~ALR~ 127 (177)
T PF13918_consen 68 FSSSPPPFCPK----GRTLDLDAILSVIDSAKKFIYISVMDYLPTSR----YSKPN------------RYWPVIDDALRR 127 (177)
T ss_pred ecCCCcccCCC----CCCcHHHHHHHHHHhHhheEEEEEeecCCeee----cCCCC------------CcchhHHHHHHH
Confidence 55566544221 11234589999999999999999774322111 00000 112679999998
Q ss_pred Hh-hCCCeEEEEecC
Q 009992 120 AA-DRNVRVRLLQHL 133 (520)
Q Consensus 120 aa-~rGV~VrIl~d~ 133 (520)
|| .|||+||+|+..
T Consensus 128 AA~~R~V~VRlLIS~ 142 (177)
T PF13918_consen 128 AAIERGVKVRLLISC 142 (177)
T ss_pred HHHHcCCeEEEEEee
Confidence 86 899999999975
No 54
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=94.26 E-value=0.44 Score=48.81 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=38.6
Q ss_pred eecceeEEe--c---CeEEEccCCCCc--ccccccCCeeeeecChhHHHHHHHHHHhh
Q 009992 448 VNHGKYAVS--D---SRAHIGTSNLVW--DYFYTTAGVSFGTYNPAIVSQLQEIFDAD 498 (520)
Q Consensus 448 ~lHaK~~Vi--D---~~a~IGS~N~d~--~sf~~n~e~~l~~~~~~~~~~l~~~F~~d 498 (520)
..|+|+.+. + ..++|||+||+. ..+...+| ..+..|+.-+.++.+..+++
T Consensus 80 ~~HgKlY~f~k~g~~~~a~IGSANfS~~~~~~~~~~E-~~v~~D~~~a~~~~~~I~~~ 136 (296)
T PF09565_consen 80 PYHGKLYIFSKNGKPFRAYIGSANFSQINGFTRRQYE-AMVTCDPNEAEEYYNFIENL 136 (296)
T ss_pred CcccEEEEEecCCCceEEEEeecccccccccccccee-EEEecChHHHHHHHHHHHHH
Confidence 479998887 3 479999999999 55567899 55666666677777777776
No 55
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=92.99 E-value=0.82 Score=46.87 Aligned_cols=53 Identities=28% Similarity=0.281 Sum_probs=35.4
Q ss_pred CCceeeEEEEE--cC--cEEEecccCCCc--ccccccccccEEEECChHHHHHHHHHHHHH
Q 009992 166 SGIVHAKVWIS--DC--RDVYIGSANNDW--KSLTQVKEVGIYLVGCPTIAKKVEVYFENL 220 (520)
Q Consensus 166 ~~~lH~K~~Vv--D~--~~~~iGSaN~d~--~sl~~~~E~gv~i~~~~~la~~l~~~F~~~ 220 (520)
.-..|+|+.+. |+ ..+||||||++. ......+|.++.. + +.-|.++..--+..
T Consensus 78 ~~~~HgKlY~f~k~g~~~~a~IGSANfS~~~~~~~~~~E~~v~~-D-~~~a~~~~~~I~~~ 136 (296)
T PF09565_consen 78 DPPYHGKLYIFSKNGKPFRAYIGSANFSQINGFTRRQYEAMVTC-D-PNEAEEYYNFIENL 136 (296)
T ss_pred CCCcccEEEEEecCCCceEEEEeeccccccccccccceeEEEec-C-hHHHHHHHHHHHHH
Confidence 45789999999 33 378999999988 5556789944443 3 44444444444443
No 56
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=89.85 E-value=0.73 Score=48.41 Aligned_cols=165 Identities=20% Similarity=0.224 Sum_probs=98.1
Q ss_pred eecCCCCCCCCCCcchHHHHHHHHhhcCCcCEEEEEEeeeeeeeccccccccHHHHHHHHHHHHHcC--CCEEEEEeccc
Q 009992 305 LSFAPPELSFGKYMADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSK--HANVKILVAYW 382 (520)
Q Consensus 305 ls~sP~~~~~~~r~~~~~all~~I~~Ak~~~~I~I~~~~y~P~~~~~~~~~~~~~i~~AL~~Aa~~R--GV~VRILi~~~ 382 (520)
+-..|+++ .+.+...|..||+ +|.|++.|. ... + .++.+.|..|. +. ..+|-||++..
T Consensus 33 iihep~~f--------y~~lk~~I~~aq~--Ri~lasLYl-G~~------E--~elv~cl~~aL-~~~~~L~v~iLlD~~ 92 (469)
T KOG3964|consen 33 IIHEPPEF--------YQRLKKLIKKAQR--RIFLASLYL-GKL------E--RELVDCLSNAL-EKNPSLKVSILLDFL 92 (469)
T ss_pred eecCCHHH--------HHHHHHHHHHhhh--eeeeeeecc-chh------H--HHHHHHHHHHh-ccCCCcEEEeehhhh
Confidence 34566653 7899999999999 999998754 221 1 46777777764 44 67899999875
Q ss_pred cCCCcChHHHHHHhhhccccccccCCCCCCCceeEEEEEcCCCCCCCCcccCCCCCCCCCC-Cc---ceeecceeEEecC
Q 009992 383 AHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYP-GF---TRVNHGKYAVSDS 458 (520)
Q Consensus 383 ~~~~~~~~~~l~sL~~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~~~~~~~~-~~---~~~lHaK~~ViD~ 458 (520)
..++... .....+.-. .+ ..+-...+++++|..|.. +|+.- ...+ +| -+.=|.|+.-+|+
T Consensus 93 rgtr~~~-~~~s~llp~-~l-----~kkf~e~vd~~lyhtp~L--------rg~~k-~Lvp~rfneg~GlQhmKIy~fdd 156 (469)
T KOG3964|consen 93 RGTRELP-NSCSALLPV-WL-----GKKFPERVDESLYHTPFL--------RGLSK-SLVPARFNEGLGLQHMKIYGFDD 156 (469)
T ss_pred hhcccCc-ccchhhchH-HH-----hhhhhhhhceeeecChhh--------hhhhh-hcCchhhccccchhhhhhhcccH
Confidence 4332211 000111000 00 001123577888887632 12110 0000 00 1467999999998
Q ss_pred eEEEccCCCCcccccccCCeeeeecChhHHHHHHHHHHhhccCCCcc
Q 009992 459 RAHIGTSNLVWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWNSPYAF 505 (520)
Q Consensus 459 ~a~IGS~N~d~~sf~~n~e~~l~~~~~~~~~~l~~~F~~dw~s~ya~ 505 (520)
-+.+..+|++..||.+-..=-..+.|..++.-+-...+.-=..+++.
T Consensus 157 eviiSGanls~dyfTNRqdry~L~sdr~~adF~f~l~dlvss~sl~~ 203 (469)
T KOG3964|consen 157 EVIISGANLSNDYFTNRQDRYYLFSDRRLADFYFKLHDLVSSFSLQK 203 (469)
T ss_pred hhhcccccchhhhhccccceeEEEecccHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999886555555667777776666555543334433
No 57
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=78.96 E-value=1.3 Score=48.00 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=25.8
Q ss_pred CCceeeEEEEEcC-------cEEEecccCCCccccc-----------ccccccEEEE
Q 009992 166 SGIVHAKVWISDC-------RDVYIGSANNDWKSLT-----------QVKEVGIYLV 204 (520)
Q Consensus 166 ~~~lH~K~~VvD~-------~~~~iGSaN~d~~sl~-----------~~~E~gv~i~ 204 (520)
+...|.|+++... .++|+||+|++..+.+ .|+|+||++.
T Consensus 346 ~~~pH~K~y~~~~~~~~~~~~W~~lgShNLS~aAWG~~~~~~~~l~i~nyElGVl~~ 402 (443)
T PF06087_consen 346 RAPPHIKTYMRFSKNDFKSLGWFYLGSHNLSKAAWGKRSKNGSQLSIRNYELGVLFL 402 (443)
T ss_dssp TS-B--EEEEEEE-TTTSEECEEEEES--BSHHHH-EEETTTTCCEESSBEEEEEEE
T ss_pred CcCcceEEEEEecCCCCCccceEEeCcccCCHHHhcccccCCceeeecceEEEEEEe
Confidence 4578999999975 4899999999743332 3799999994
No 58
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=74.48 E-value=1.9 Score=46.87 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCCCCcchhHHHHH---cCCCCeEEEEeccccccCCCceeeEEEEE---cC-cEEEe
Q 009992 111 FDVYKSIENAADRNVRVRLLQHLGVYPDFTTEASNLA---SGRKNVENVTLLLGDWWGSGIVHAKVWIS---DC-RDVYI 183 (520)
Q Consensus 111 ~~i~~aL~~aa~rGV~VrIl~d~g~~~~~~~~~~~L~---~~~~gv~v~~~~~~~~~~~~~lH~K~~Vv---D~-~~~~i 183 (520)
+-|++.+-....+-+.|.++... ........+. ....+++++..+.+. .-|.+|+|+||. |+ -.++|
T Consensus 47 ~wll~~~~~~~~~~~~i~~v~g~----~~~~~~~~~~~~~~~~~nv~~~~~~mp~--~~g~hHsKm~ll~y~~~~lRVvI 120 (443)
T PF06087_consen 47 DWLLSQFPPSTRKNIPITIVHGT----KDPPDKREIRQQAAIYPNVKLIFPPMPI--PFGTHHSKMMLLFYEDGSLRVVI 120 (443)
T ss_dssp HHHHCCS-CCGTTCEEEEEECTS----EEHHHHHHHHHHHCCHTTEEEEEE---S--TT--B--EEEEEEETTCEEEEEE
T ss_pred HHHHHhCCHhhcccceEEEEeCC----CcchhhhhhhhhcccCCCeEEEccCCCc--ccccccceeEEEEeCCccEEEEE
Confidence 45555554443334566666641 1111112222 134788888655432 348999999999 77 78999
Q ss_pred cccCC---Cccccc
Q 009992 184 GSANN---DWKSLT 194 (520)
Q Consensus 184 GSaN~---d~~sl~ 194 (520)
.|+|| ||.-.+
T Consensus 121 ~TaNl~~~Dw~~~~ 134 (443)
T PF06087_consen 121 PTANLTPYDWNNKT 134 (443)
T ss_dssp ESS-BSHHHHCSSB
T ss_pred ECCCCCHHHHCCcc
Confidence 99999 454433
No 59
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=52.34 E-value=22 Score=35.60 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=40.1
Q ss_pred CcchHHHHHHHHhhcCCcCEEEEEEeeeeeeeccccccccHHHHHHHHHHHHHcCCCEEEEEeccc
Q 009992 317 YMADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYW 382 (520)
Q Consensus 317 r~~~~~all~~I~~Ak~~~~I~I~~~~y~P~~~~~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~~ 382 (520)
+....+.+.++|++|++ .+.+.+++ +....+..+|..|. .|||.|.+++...
T Consensus 118 ~~~i~~~~~e~i~~a~~--ei~~~~~~-----------e~~~~l~~~l~~~~-~rgv~v~i~~~~~ 169 (247)
T COG1378 118 SEEIIEKIKEVINEAEK--EIIIVLPY-----------EIFKELKEPLIRAL-KRGVRVLILVFPI 169 (247)
T ss_pred HHHHHHHHHHHHHhhhc--EEEEEeCH-----------HHHHHhHHHHHHHH-HccCeEEEEeccc
Confidence 33456788999999999 88887651 11246788899986 9999999999763
No 60
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=41.42 E-value=36 Score=33.99 Aligned_cols=50 Identities=20% Similarity=0.177 Sum_probs=40.9
Q ss_pred ccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEecC
Q 009992 57 VSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHL 133 (520)
Q Consensus 57 ~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d~ 133 (520)
....+.+.++|+.|+++|.++..+ ..-..+.+.|..+.+|||.|.++...
T Consensus 119 ~~i~~~~~e~i~~a~~ei~~~~~~---------------------------e~~~~l~~~l~~~~~rgv~v~i~~~~ 168 (247)
T COG1378 119 EEIIEKIKEVINEAEKEIIIVLPY---------------------------EIFKELKEPLIRALKRGVRVLILVFP 168 (247)
T ss_pred HHHHHHHHHHHHhhhcEEEEEeCH---------------------------HHHHHhHHHHHHHHHccCeEEEEecc
Confidence 456678899999999999998651 11267889999999999999999974
No 61
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=37.42 E-value=42 Score=28.76 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHhhCCCeEEEE
Q 009992 110 GFDVYKSIENAADRNVRVRLL 130 (520)
Q Consensus 110 g~~i~~aL~~aa~rGV~VrIl 130 (520)
--.|++.|.+++++|.+|+|-
T Consensus 62 l~~i~~~Le~~~~~g~~V~v~ 82 (99)
T PF09345_consen 62 LMDIFDLLEDAAQKGGKVTVN 82 (99)
T ss_pred HHHHHHHHHHHHhcCCcEEEE
Confidence 367889999999998777665
No 62
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=33.35 E-value=1.6e+02 Score=29.81 Aligned_cols=124 Identities=12% Similarity=0.109 Sum_probs=74.6
Q ss_pred HHHHHHHhhcCCcCEEEEEEeeeeeeeccccccccHHHHHHHHHHHHHcCCCEEEEEeccccCCCcChHHHHHHhhhccc
Q 009992 322 QAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNV 401 (520)
Q Consensus 322 ~all~~I~~Ak~~~~I~I~~~~y~P~~~~~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~~~~~~~~~~~~l~sL~~~~~ 401 (520)
..+++.+.+.+ .|+..+.+|-|.. |.+..-+ + ++|++|.++++.... +.....|-..+..
T Consensus 130 ~e~~e~l~~S~---~i~~~sS~fhP~~---------p~l~~el---~-~kg~~vslIlT~~V~-er~~~~~~~el~~--- 189 (260)
T COG4742 130 PEFLENLSSSK---RIMGFSSYFHPSY---------PSLYLEL---A-EKGIDVSLILTEPVF-ERLKSDYKEELKE--- 189 (260)
T ss_pred HHHHHHHhcch---hhhhhhhhhCCCc---------HHHHHHH---H-HcCCCEEEEecHHHH-HHHHHHHHHHHHH---
Confidence 57788888877 5777778888763 5555444 5 799999999976311 1111122222221
Q ss_pred cccccCCCCCCCceeEEEEEcCCCCCCCCcccCCCCCCCCCCCcceeecceeEEecCeEEEccCCCCcccccccCCeeee
Q 009992 402 LCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSDSRAHIGTSNLVWDYFYTTAGVSFG 481 (520)
Q Consensus 402 l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lHaK~~ViD~~a~IGS~N~d~~sf~~n~e~~l~ 481 (520)
+.. +.+ .++|.... -.. +-++|+|+...+|=.+.++++- .+. ++
T Consensus 190 ~l~-------~~n--~~~~v~~~----------------------~~~-~~~~VTD~f~~L~Lf~k~G~~d-~~~---l~ 233 (260)
T COG4742 190 FLK-------LEN--TKLYVCDG----------------------IKL-ASLIVTDRFMALSLFDKDGRYD-RQY---LV 233 (260)
T ss_pred HHh-------cCC--CeEEEecC----------------------Cce-eeEEEechhhhhcccccCCCcC-cce---eE
Confidence 110 122 34454321 013 5678889988888888876543 333 67
Q ss_pred ecChhHHHHHHHHHHhhccC
Q 009992 482 TYNPAIVSQLQEIFDADWNS 501 (520)
Q Consensus 482 ~~~~~~~~~l~~~F~~dw~s 501 (520)
..++...+-=++.|+.+-..
T Consensus 234 s~e~~Ai~WG~eLf~yy~~~ 253 (260)
T COG4742 234 SFEPSALKWGEELFEYYKDR 253 (260)
T ss_pred ecChHHHHHHHHHHHHHHHh
Confidence 77787777777788776544
No 63
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=30.44 E-value=1.6e+02 Score=26.46 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=39.3
Q ss_pred HHHHHHHhhcCCcCEEEE-----EEeeeeeeeccc-cccccHHHHHHHHHHHHHcCCCEEEEEecc
Q 009992 322 QAWVDTIKSVGTRATLRI-----STMDWLGQSQYL-KQTVYWSALSSAVSEVVFSKHANVKILVAY 381 (520)
Q Consensus 322 ~all~~I~~Ak~~~~I~I-----~~~~y~P~~~~~-~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~ 381 (520)
+.+++.+..|.- .+|-| .-+.|.|+.... .+..- .+++..+.+|+.++|++|=+-++-
T Consensus 3 ~~~~~~lk~~~v-~si~i~a~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 3 EQFVDTLKEAHV-NSITIFAKCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred HHHHHHHHHhCC-CEEEEEcccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEee
Confidence 456666666654 35555 346688886421 22222 578888999999999999999875
No 64
>PRK14758 hypothetical protein; Provisional
Probab=29.63 E-value=3.5 Score=26.26 Aligned_cols=20 Identities=45% Similarity=0.677 Sum_probs=17.1
Q ss_pred CCCcccceeeeeeeeecccc
Q 009992 1 MKPRYRTSLSLVIFILFTLY 20 (520)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (520)
|--|||.-++|++.|+|.++
T Consensus 1 Mv~RYrFEliLivlIlCali 20 (27)
T PRK14758 1 MVGRYRFEFILIILILCALI 20 (27)
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 66799999999999998765
No 65
>PF08350 DUF1724: Domain of unknown function (DUF1724); InterPro: IPR013561 This domain of unknown function has so far only been found at the C terminus of archaean proteins, including several transcriptional regulators of the ArsR family (see IPR001845 from INTERPRO).
Probab=29.43 E-value=1.4e+02 Score=23.35 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=39.1
Q ss_pred eEEecCeEEEccCCCCcccccccCCeeeeecChhHHHHHHHHHHhhccCCC
Q 009992 453 YAVSDSRAHIGTSNLVWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWNSPY 503 (520)
Q Consensus 453 ~~ViD~~a~IGS~N~d~~sf~~n~e~~l~~~~~~~~~~l~~~F~~dw~s~y 503 (520)
++|+|+...+|=.+-+++ |+. ..++..+++..+-=++.|+..|+.+.
T Consensus 16 l~VTD~f~~l~Lf~~~G~-yD~---~~lis~~~~Al~WG~eLF~yY~~~s~ 62 (64)
T PF08350_consen 16 LTVTDKFMSLSLFNKDGR-YDH---QDLISFDPSALKWGEELFEYYKKRSE 62 (64)
T ss_pred EEEEcCeEEEEEEcCCCc-CcC---eeEEECCHHHHHHHHHHHHHHHHhCc
Confidence 568899999999999987 444 55778899999999999999997753
No 66
>PF03749 SfsA: Sugar fermentation stimulation protein; InterPro: IPR005224 The sugar fermentation stimulation protein is a probable regulatory factor involved in maltose metabolism. It contains a putative DNA-binding domain, and was isolated as a gene which enabled Escherichia coli W3110 (strain MK2001) to use maltose [].
Probab=27.43 E-value=1.5e+02 Score=29.10 Aligned_cols=26 Identities=12% Similarity=0.005 Sum_probs=20.9
Q ss_pred ccHHHHHHHHHHHHHcCCCEEEEEecc
Q 009992 355 VYWSALSSAVSEVVFSKHANVKILVAY 381 (520)
Q Consensus 355 ~~~~~i~~AL~~Aa~~RGV~VRILi~~ 381 (520)
..-|...++|.+|+ +.||+|.-+--.
T Consensus 178 ~~Dp~fa~~l~~A~-~~GV~v~a~~~~ 203 (215)
T PF03749_consen 178 EIDPEFAEALREAA-EAGVEVLAYRCS 203 (215)
T ss_pred hcCHHHHHHHHHHH-HCCCEEEEEEEE
Confidence 34488999999987 999999877643
No 67
>PRK00347 putative DNA-binding transcriptional regulator; Reviewed
Probab=25.49 E-value=2.1e+02 Score=28.46 Aligned_cols=72 Identities=8% Similarity=-0.025 Sum_probs=38.9
Q ss_pred eeeeecCCCCCCCCCCcchHHHHHHHHhhcCCcCEEEEEEeeeeeee-ccccccccHHHHHHHHHHHHHcCCCEEEEEec
Q 009992 302 YSYLSFAPPELSFGKYMADEQAWVDTIKSVGTRATLRISTMDWLGQS-QYLKQTVYWSALSSAVSEVVFSKHANVKILVA 380 (520)
Q Consensus 302 ~~~ls~sP~~~~~~~r~~~~~all~~I~~Ak~~~~I~I~~~~y~P~~-~~~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~ 380 (520)
.+.+.++|.. .....+-+++..++++.+-.|--....|+. .+......-|...++|++|+ +.||+|.-+.-
T Consensus 145 ~A~FPDapT~-------RG~kHl~eL~~l~~~G~ra~vlFvvqr~d~~~F~P~~~~Dp~fa~~l~~A~-~~GV~v~a~~~ 216 (234)
T PRK00347 145 LAMFPDAVTE-------RGQKHLRELIELAKEGHRAVLLFLVQRSDIKRFSPADEIDPKYAELLREAV-KAGVEVLAYKC 216 (234)
T ss_pred EEECCCCCcH-------HHHHHHHHHHHHHHCCCcEEEEEEEeCCCCCEEeECcccCHHHHHHHHHHH-HCCCEEEEEEE
Confidence 3456666543 234566666665544322222211111211 12222333489999999987 99999988764
Q ss_pred c
Q 009992 381 Y 381 (520)
Q Consensus 381 ~ 381 (520)
.
T Consensus 217 ~ 217 (234)
T PRK00347 217 E 217 (234)
T ss_pred E
Confidence 4
No 68
>TIGR00230 sfsA sugar fermentation stimulation protein. probable regulatory factor involved in maltose metabolism contains a putative DNA binding domain. Isolated as a gene which enabled E.coli strain MK2001 to use maltose.
Probab=20.93 E-value=2.4e+02 Score=27.95 Aligned_cols=26 Identities=4% Similarity=-0.193 Sum_probs=21.0
Q ss_pred ccHHHHHHHHHHHHHcCCCEEEEEecc
Q 009992 355 VYWSALSSAVSEVVFSKHANVKILVAY 381 (520)
Q Consensus 355 ~~~~~i~~AL~~Aa~~RGV~VRILi~~ 381 (520)
..-|...++|.+|. +.||+|.-+.-.
T Consensus 190 ~~Dp~fa~~l~~A~-~~GVev~a~~~~ 215 (232)
T TIGR00230 190 EGDEEYYRLLRRAH-EAGVEVRPYQVE 215 (232)
T ss_pred ccCHHHHHHHHHHH-HCCCEEEEEEEE
Confidence 34489999999987 999999887543
No 69
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=20.67 E-value=95 Score=30.69 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=33.5
Q ss_pred HHHHHHhhcCCcCEEEEEEeeeeeeeccccccccHHHHHHHHHHHHHcCCCEEEEEeccccCCCcChHHHHH
Q 009992 323 AWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLK 394 (520)
Q Consensus 323 all~~I~~Ak~~~~I~I~~~~y~P~~~~~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~~~~~~~~~~~~l~ 394 (520)
-+-.+=..|.- ..++|+-|-=... . .---+.+.+|+++.-+||++|+|+.+.|-++-.....|..
T Consensus 94 Yl~~l~~aA~P-~~L~iEgP~d~g~----r--~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~d 158 (248)
T PF07476_consen 94 YLAELEEAAAP-FKLRIEGPMDAGS----R--EAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFAD 158 (248)
T ss_dssp HHHHHHHHHTT-S-EEEE-SB--SS----H--HHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHH
T ss_pred HHHHHHHhcCC-CeeeeeCCcCCCC----h--HHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHh
Confidence 33344444544 5788887532221 1 0112456678887778999999999999877555545543
Done!