Query 009992
Match_columns 520
No_of_seqs 276 out of 2242
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 17:29:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hsi_A Phosphatidylserine synt 100.0 2.8E-38 9.6E-43 338.2 23.3 343 58-506 37-423 (458)
2 1v0w_A Phospholipase D; hydrol 100.0 8E-38 2.7E-42 339.5 20.5 387 57-514 65-503 (506)
3 1xdp_A Polyphosphate kinase; P 100.0 2.4E-33 8.1E-38 311.2 26.2 283 59-507 348-653 (687)
4 2o8r_A Polyphosphate kinase; s 100.0 9.5E-31 3.3E-35 288.7 24.8 277 58-501 352-652 (705)
5 4ggj_A Mitochondrial cardiolip 99.9 5.4E-24 1.9E-28 203.2 16.6 137 56-227 44-180 (196)
6 4ggj_A Mitochondrial cardiolip 99.9 3.9E-22 1.3E-26 190.3 13.4 131 319-502 46-177 (196)
7 1byr_A Protein (endonuclease); 99.9 4.8E-22 1.7E-26 181.2 13.0 134 58-225 14-149 (155)
8 1byr_A Protein (endonuclease); 99.8 5.2E-21 1.8E-25 174.3 13.7 135 320-505 15-151 (155)
9 4gel_A Mitochondrial cardiolip 99.8 1.5E-20 5.3E-25 181.6 13.1 133 58-225 58-210 (220)
10 4gel_A Mitochondrial cardiolip 99.8 4.3E-20 1.5E-24 178.4 11.6 150 320-502 59-209 (220)
11 3hsi_A Phosphatidylserine synt 99.8 9.7E-19 3.3E-23 187.0 11.1 136 57-225 257-420 (458)
12 1v0w_A Phospholipase D; hydrol 99.6 1.4E-15 4.7E-20 164.8 14.5 145 58-225 314-492 (506)
13 1xdp_A Polyphosphate kinase; P 99.6 1.5E-15 5.1E-20 168.7 10.8 135 321-504 349-496 (687)
14 2o8r_A Polyphosphate kinase; s 99.3 1.9E-11 6.6E-16 135.2 12.8 127 58-225 519-654 (705)
15 3qph_A TRMB, A global transcri 98.4 1.4E-07 4.7E-12 97.0 5.1 117 319-499 119-240 (342)
16 3qph_A TRMB, A global transcri 98.3 6.1E-07 2.1E-11 92.2 5.6 119 57-221 118-240 (342)
17 2c1l_A Restriction endonucleas 97.5 0.00035 1.2E-08 67.2 10.1 110 349-500 46-166 (358)
18 2c1l_A Restriction endonucleas 97.2 0.00094 3.2E-08 64.3 8.7 93 110-212 50-148 (358)
19 2f5t_X Archaeal transcriptiona 96.2 0.014 4.7E-07 56.5 8.9 84 56-182 8-92 (233)
20 2f5t_X Archaeal transcriptiona 95.3 0.026 8.8E-07 54.5 6.5 50 318-381 9-58 (233)
21 1jy1_A TDP1, tyrosyl-DNA phosp 65.6 7.4 0.00025 41.1 5.9 80 111-195 65-150 (464)
22 1q32_A TDP1P;, tyrosyl-DNA pho 63.5 3.9 0.00013 44.0 3.3 38 166-203 428-487 (544)
23 1q32_A TDP1P;, tyrosyl-DNA pho 48.1 18 0.0006 39.0 5.2 42 151-195 166-214 (544)
24 3sq7_A Tyrosyl-DNA phosphodies 33.3 48 0.0016 34.9 5.6 36 151-189 89-128 (470)
25 1jy1_A TDP1, tyrosyl-DNA phosp 25.6 35 0.0012 35.8 2.9 29 447-475 116-148 (464)
26 3sq7_A Tyrosyl-DNA phosphodies 24.1 34 0.0012 36.1 2.4 28 458-485 380-413 (470)
27 1twd_A Copper homeostasis prot 22.5 46 0.0016 32.1 2.8 66 35-126 23-88 (256)
28 2bdq_A Copper homeostasis prot 20.1 52 0.0018 31.1 2.6 69 32-126 20-91 (224)
No 1
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=100.00 E-value=2.8e-38 Score=338.18 Aligned_cols=343 Identities=16% Similarity=0.104 Sum_probs=216.7
Q ss_pred cHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhC--CCeEEEEecC--
Q 009992 58 SSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADR--NVRVRLLQHL-- 133 (520)
Q Consensus 58 ~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~r--GV~VrIl~d~-- 133 (520)
..+++++++|++||++|+|++||| .+ |..|+.|+++|.+|++| ||+|||++|.
T Consensus 37 ~~~~~l~~~I~~A~~~I~i~~~~~---~~--------------------d~~g~~l~~aL~~aa~r~~GV~Vril~D~~~ 93 (458)
T 3hsi_A 37 EFKTQIIELIRNAKKRIYVTALYW---QK--------------------DEAGQEILDEIYRVKQENPHLDVKVLIDWHR 93 (458)
T ss_dssp HHHHHHHHHHHTCSSEEEEEESCB---CS--------------------SHHHHHHHHHHHHHHHHSTTCEEEEEEETTG
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEE---ec--------------------CcHHHHHHHHHHHHHhcCCCCEEEEEEECcc
Confidence 567899999999999999999888 22 35678999999999999 9999999996
Q ss_pred ------CCCCCc--chhHHHHHcCCCCeEEE--Ee--ccccccCCCceeeEEEEEcCcEEEecccCCCcccccc----cc
Q 009992 134 ------GVYPDF--TTEASNLASGRKNVENV--TL--LLGDWWGSGIVHAKVWISDCRDVYIGSANNDWKSLTQ----VK 197 (520)
Q Consensus 134 ------g~~~~~--~~~~~~L~~~~~gv~v~--~~--~~~~~~~~~~lH~K~~VvD~~~~~iGSaN~d~~sl~~----~~ 197 (520)
|+.... ......|.+.+++|+++ .+ +.......+++|+|++||||++++.| +|++..+++. ..
T Consensus 94 ~~r~~~g~~~~~~~~~~~~~L~~~g~nv~v~~~~f~~p~~~~~~~~r~H~Ki~viD~~v~~~G-~Ni~d~y~~~~~~~~~ 172 (458)
T 3hsi_A 94 AQRNLLGAEKSATNADWYCEQRQTYQLPDDPNMFFGVPINTREVFGVLHVKGFVFDDTVLYSG-ASINNVYLHQFEKYRY 172 (458)
T ss_dssp GGSCCC-----CCHHHHHHHHHHHHTCTTCCCCEEEECSSSSGGGCCEECCEEEETTEEEEES-CCBSTTTTTCSSCCEE
T ss_pred ccccccccccccccHHHHHHHHhhCCCceEeeeecCCccccccccCcceeeEEEECCCEEEEe-eecCHHHhcCCcccCc
Confidence 121111 12345565422224444 33 32212245899999999999997666 9999888875 23
Q ss_pred cccEEEECChHHHHHHHHHH--HHHHhcCCCCCC--ccccccchhhhhccccCCCCcccCCCCCccCCCCCCCccCCCcC
Q 009992 198 EVGIYLVGCPTIAKKVEVYF--ENLWTLSSLNSS--TYTRTVSDQQWQANRTVPCWSHFLDPKGRCRSPLPPVLEVPHVE 273 (520)
Q Consensus 198 E~gv~i~~~~~la~~l~~~F--~~~W~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~pl~~~~~~~~~~ 273 (520)
+.-++++| +.+.|....| +.+|........ .+.+ ...+|.... .. ++ ..+. .. .
T Consensus 173 drd~~i~g--~~~~D~~~~~~~~~~~~g~~v~~l~~~~~~--~~~~~~~~~------~~----~~--~~l~----~~--~ 230 (458)
T 3hsi_A 173 DRYQKITH--AELADSMVNFINDYLLDFSAVYPLDVTNRP--RTKEIRGNI------RA----YR--KDLA----QN--G 230 (458)
T ss_dssp CCEEEEEC--HHHHHHHHHHHHHTTCCTTTCEESSSSCCC--CGGGTHHHH------HH----HH--HHHH----HH--C
T ss_pred chhhhhcC--chHHHHHHHHHHhhhhcCccchhhHHHhcc--cchhhHHHH------HH----HH--Hhhh----hc--c
Confidence 34467888 4567777767 555643211000 0000 000010000 00 00 0000 00 0
Q ss_pred CCCccCCcccccccccCCCCCCCCCCCceeeeecCCCCCCCCCCcchHHHHHHHHhhcCCcCEEEEEEeeeeeeeccccc
Q 009992 274 GYPILSDPYMFRETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQ 353 (520)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~sP~~~~~~~r~~~~~all~~I~~Ak~~~~I~I~~~~y~P~~~~~~~ 353 (520)
.|. ++....+ .....+.-...|.. ......+.++++|++|++ +|+|++|||+|+
T Consensus 231 ~~~---------~~~~~~~-----~~~~~v~p~~~~~~----~~~~i~~~~~~lI~~A~~--~I~I~tpYf~p~------ 284 (458)
T 3hsi_A 231 EYS---------LKSAVKL-----PNVLSVSPLFGLGA----SGNELNQVIEDLFLQVQK--KLVICTPYFNFP------ 284 (458)
T ss_dssp CCC---------CSSCBSS-----CSSCEEEEEEEESS----SSCHHHHHHHHHHHTCSS--EEEEECSSSCCC------
T ss_pred ccc---------ccccCCC-----CceEEEecCCCCCC----chhHHHHHHHHHHHhccc--EEEEEEeccCCC------
Confidence 000 0000000 00111111011211 122456799999999999 999999999997
Q ss_pred cccHHHHHHHHHHHHHcCCCEEEEEeccccCCC-------c----ChHHHHHHhh------hccccccccCCCCCCCcee
Q 009992 354 TVYWSALSSAVSEVVFSKHANVKILVAYWAHFI-------N----NTDEYLKSLL------YSNVLCNSSKYNKCSGKVE 416 (520)
Q Consensus 354 ~~~~~~i~~AL~~Aa~~RGV~VRILi~~~~~~~-------~----~~~~~l~sL~------~~~~l~~~~~~~~~~~~i~ 416 (520)
+.+.+||+.|+ +|||+||||+++...++ + ....++..+. .+..+.. .+.+.
T Consensus 285 ----~~~~~aL~~Aa-~rGV~VrIi~~~~~and~y~~~~~~~~~~~~~~~lye~~~~~f~~~~~~l~~-------~G~i~ 352 (458)
T 3hsi_A 285 ----RTLQHKIATLL-ENGKRVEIIVGDKVANDFYIPPEQPFKMAGALPYLYESNLRRFCEKFETQIE-------SGQLV 352 (458)
T ss_dssp ----HHHHHHHHHHH-TTTCEEEEEEECGGGSTTCCCTTSCCCGGGGHHHHHHHHHHHHHHHTHHHHH-------HTSEE
T ss_pred ----HHHHHHHHHHH-HCCCeEEEEECCccccCCccCCcchhhhhcchHHHHHHhhhhhHHHHHHHHh-------CCCeE
Confidence 68999999998 99999999999864222 1 1212321110 0001111 12377
Q ss_pred EEEEEcCCCCCCCCcccCCCCCCCCCCCcceeecceeEEec-CeEEEccCCCCcccccccCCeeeeecChh--HHHHHHH
Q 009992 417 IKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSD-SRAHIGTSNLVWDYFYTTAGVSFGTYNPA--IVSQLQE 493 (520)
Q Consensus 417 Vr~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lHaK~~ViD-~~a~IGS~N~d~~sf~~n~e~~l~~~~~~--~~~~l~~ 493 (520)
|++|++. .+++|+|+||+| ++++|||+|||.|||..|.|+++++.+++ +++++++
T Consensus 353 V~i~~~~----------------------~~~lHaK~~vvD~~~~~vGS~N~d~RS~~lN~E~~~~i~~~~~~l~~~l~~ 410 (458)
T 3hsi_A 353 VRLWRDG----------------------DNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQQQLLAQVEK 410 (458)
T ss_dssp EEEECBT----------------------TBEECCCEEEETTTEEEEECCCCSHHHHHTCEEEEEEEECTTCSSHHHHHH
T ss_pred EEEEecC----------------------CCceeEEEEEECCeEEEecCCCCCcchhhhCceeEEEEeCCcHHHHHHHHH
Confidence 9999853 268999999998 79999999999999999999999999997 9999999
Q ss_pred HHHhhccCCCccc
Q 009992 494 IFDADWNSPYAFP 506 (520)
Q Consensus 494 ~F~~dw~s~ya~~ 506 (520)
.|+++|..+..++
T Consensus 411 ~f~~~~~~s~~vt 423 (458)
T 3hsi_A 411 EQNQIRQHTKVLK 423 (458)
T ss_dssp HHHHHHTTEEECC
T ss_pred HHHHHHHhCeEcC
Confidence 9999998754443
No 2
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=100.00 E-value=8e-38 Score=339.48 Aligned_cols=387 Identities=17% Similarity=0.175 Sum_probs=223.3
Q ss_pred ccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCC--CeEEEEecC-
Q 009992 57 VSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRN--VRVRLLQHL- 133 (520)
Q Consensus 57 ~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rG--V~VrIl~d~- 133 (520)
...+++++++|++||++|+|++|+|. .+ +..|+.|+++|++|++|| |+||||+|.
T Consensus 65 ~~~~~~l~~~I~~Ak~~I~i~~y~~~--~~--------------------d~~g~~i~~aL~~aa~rGp~V~Vril~D~~ 122 (506)
T 1v0w_A 65 KRLLAKMTENIGNATRTVDISTLAPF--PN--------------------GAFQDAIVAGLKESAAKGNKLKVRILVGAA 122 (506)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEESSC--CC--------------------HHHHHHHHHHHHHHHHTTCCEEEEEEEECC
T ss_pred HHHHHHHHHHHHHhccEEEEEEeecc--CC--------------------ChHHHHHHHHHHHHHhCCCCcEEEEEEeCc
Confidence 46889999999999999999976631 11 245789999999999999 999999997
Q ss_pred CCCCC--c-chhHHHHHc-CC---CCeEEEEecccc-ccCCCceeeEEEEEcCcEEEecccCC-Ccccc---cccccccE
Q 009992 134 GVYPD--F-TTEASNLAS-GR---KNVENVTLLLGD-WWGSGIVHAKVWISDCRDVYIGSANN-DWKSL---TQVKEVGI 201 (520)
Q Consensus 134 g~~~~--~-~~~~~~L~~-~~---~gv~v~~~~~~~-~~~~~~lH~K~~VvD~~~~~iGSaN~-d~~sl---~~~~E~gv 201 (520)
|.... . ....+.|.. +. ..+.++...+.. ....+++|+|++|||++++|+||+|+ +.+.+ ..++|+++
T Consensus 123 g~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~r~H~K~~ViD~~~a~~Gg~Nl~~d~y~~~~~~~~D~~v 202 (506)
T 1v0w_A 123 PVYHMNVIPSKYRDELTAKLGKAAENITLNVASMTTSKTAFSWNHSKILVVDGQSALTGGINSWKDDYLDTTHPVSDVDL 202 (506)
T ss_dssp C--CCCCHHHHHHHHHHHHHGGGGGGEEEEEEEECSBTTTTBCBCCCEEEETTTEEEEESCCCCHHHHTSSSSCCBEEEE
T ss_pred cccccccCCHHHHHHHHhcccceeecCccccccccccCCccccceeeEEEECCcEEEeeccccCccccccCCCCceEEEE
Confidence 33211 1 123455654 11 233443211110 01235999999999999999999998 43333 26799999
Q ss_pred EEECChHHHHHHHHHHHHHHhcCCCCCCccccccchhhhhcc----ccCCCCcccCCCCCccCCCCCCCccCCCcCCCCc
Q 009992 202 YLVGCPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQAN----RTVPCWSHFLDPKGRCRSPLPPVLEVPHVEGYPI 277 (520)
Q Consensus 202 ~i~~~~~la~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~ 277 (520)
.++| ++|.++++.|..+|........ + .++.|... ...+.|...+ .|.. .+.
T Consensus 203 ~i~G--~~v~~l~~~F~~~W~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~-------~p~~----------~~~ 258 (506)
T 1v0w_A 203 ALTG--PAAGSAGRYLDTLWTWTCQNKS---N--IASVWFAASGNAGCMPTMHKDT-------NPKA----------SPA 258 (506)
T ss_dssp EEES--HHHHHHHHHHHHHHHHHHHTTT---S--TTTEEEEESTTCCCCTTHHHHH-------SCSS----------CCC
T ss_pred EEEC--HHHHHHHHHHHHHHhhhccccC---C--hhhhccccccccccCchhcccc-------Cccc----------Ccc
Confidence 9998 7999999999999986532110 0 00001000 0000000000 0000 000
Q ss_pred cCCcc-----cccccccC--CCCCC--CCC-CCceeeeecCCCCCCCCC----CcchHHHHHHHHhhcCCcCEEEEEEee
Q 009992 278 LSDPY-----MFRETMET--PGSNY--STL-QPHYSYLSFAPPELSFGK----YMADEQAWVDTIKSVGTRATLRISTMD 343 (520)
Q Consensus 278 ~~~~~-----~~~~~~~~--~~~~~--~~~-~~~~~~ls~sP~~~~~~~----r~~~~~all~~I~~Ak~~~~I~I~~~~ 343 (520)
.++.. ....++.. |.... ..+ .....++++.|....+.. .....++++++|++||+ +|+|+++|
T Consensus 259 ~~~~~~~~~~~~~~~i~~~~P~~~~~~~~w~~~~~~~~~d~P~~~~~~~~~~~~~~~~~~~~~~I~~A~~--~I~I~tq~ 336 (506)
T 1v0w_A 259 TGNVPVIAVGGLGVGIKDVDPKSTFRPDLPTASDTKCVVGLHDNTNADRDYDTVNPEESALRALVASAKG--HIEISQQD 336 (506)
T ss_dssp CSSEEEEEEECCCSSSCSCCTTCCCCCCCCCCSSSCSSTTCCCTTTSCHHHHHHCHHHHHHHHHHHTCSS--EEEEEESC
T ss_pred cccccceecccccceeecCCccccccccCcccccceeeccccccccCcccccccccHHHHHHHHHhCcCc--EEEEEecc
Confidence 00000 00000000 00000 000 001123444443322110 02457899999999999 99999955
Q ss_pred eeeeeccccccccHHHHHHHHHHHHHcCCCEEEEEeccccCCCcChHHHHHHhhhccccccccCCCCCCCce--------
Q 009992 344 WLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKV-------- 415 (520)
Q Consensus 344 y~P~~~~~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~~~~~~~~~~~~l~sL~~~~~l~~~~~~~~~~~~i-------- 415 (520)
|.|-. .....+++.|.+||++|+ +|||+||||++.+. ++..... .....+..|.... .....++
T Consensus 337 ~~pyf--~p~~~~~~~i~~aL~~Aa-~rGV~VrIl~~~~~-~~~~~~~--a~~~~~~~L~~~~--~~l~~gv~ll~~g~~ 408 (506)
T 1v0w_A 337 LNATC--PPLPRYDIRLYDALAAKM-AAGVKVRIVVSDPA-NRGAVGS--GGYSQIKSLSEIS--DTLRNRLANITGGQQ 408 (506)
T ss_dssp SSCCT--TTSCSCCHHHHHHHHHHH-HTTCEEEEEECCGG-GCC--------CCCCSCTHHHH--HHHHHHHHHHHTSHH
T ss_pred ccccc--cCcccchHHHHHHHHHHH-hCCCcEEEEeCCCC-chHHHHH--hHHHHHHHHHHhh--hhhcccchhcccccc
Confidence 54421 110112368999999998 89999999999864 3332110 1111100110000 0000011
Q ss_pred --------eEEEEEcCCCCCCCCcccCCCCCCCCCC-CcceeecceeEEec-CeEEEccCCCCcccccccCCeeeeecCh
Q 009992 416 --------EIKYYKVPGYNLTGPAIQNGSNTGNIYP-GFTRVNHGKYAVSD-SRAHIGTSNLVWDYFYTTAGVSFGTYNP 485 (520)
Q Consensus 416 --------~Vr~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~lHaK~~ViD-~~a~IGS~N~d~~sf~~n~e~~l~~~~~ 485 (520)
+++++.+...... .+. .-..++|+|+||+| ++++|||+|||.+||. |+++++.++
T Consensus 409 e~~~~~~~~l~i~~~~~~~~~------------~~~~~~~~~lHaK~~vvD~~~~~vGS~N~d~rS~~---E~~l~i~~~ 473 (506)
T 1v0w_A 409 AAKTAMCSNLQLATFRSSPNG------------KWADGHPYAQHHKLVSVDSSTFYIGSKNLYPSWLQ---DFGYIVESP 473 (506)
T ss_dssp HHHHHHHHHEEEEECCSSSSS------------SCTTSCCCCBCCEEEEETTTEEEEESCCSSCCCSB---CEEEEEECH
T ss_pred hhccccccceeeeeccccCcc------------ccccCccccceEEEEEECCcEEEEeCCCCCCcchh---hceeEecCH
Confidence 2455433100000 000 00258999999998 7999999999999993 999999999
Q ss_pred hHHHHHHHHHHhh-ccCCCcccccccCCcc
Q 009992 486 AIVSQLQEIFDAD-WNSPYAFPVEELGDGH 514 (520)
Q Consensus 486 ~~~~~l~~~F~~d-w~s~ya~~l~~~~~~~ 514 (520)
++++++.+.|+++ |+.+..++++.+..++
T Consensus 474 ~~a~~l~~~f~~~~w~~s~~~~~~~~~~~~ 503 (506)
T 1v0w_A 474 EAAKQLDAKLLDPQWKYSQETATVDYARGI 503 (506)
T ss_dssp HHHHHHHHHTHHHHHHHHGGGCSEEGGGTE
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHhhhh
Confidence 9999999999986 8877787777766554
No 3
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=100.00 E-value=2.4e-33 Score=311.22 Aligned_cols=283 Identities=14% Similarity=0.117 Sum_probs=208.6
Q ss_pred HHHHHHHHHHhccc-----EEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEecC
Q 009992 59 SGNVLKWLAGNSTK-----RLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHL 133 (520)
Q Consensus 59 t~~~~~~lI~~Ak~-----sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d~ 133 (520)
+++.++++|++|++ +|+| ++|++ .++..|+++|++||+|||+|+|++|.
T Consensus 348 sf~~v~~~I~~A~~dp~v~~I~i-t~Y~~-------------------------~~d~~I~~AL~~AA~rGV~VrVLvd~ 401 (687)
T 1xdp_A 348 TFEHVLELLRQASFDPSVLAIKI-NIYRV-------------------------AKDSRIIDSMIHAAHNGKKVTVVVEL 401 (687)
T ss_dssp CTHHHHHHHHHHHHCTTEEEEEE-EESSC-------------------------CTTCHHHHHHHHHHHTTCEEEEEECT
T ss_pred hhhhHHHHHHHHhhCCcceEEEE-Eeeee-------------------------cCcHHHHHHHHHHHhcCCEEEEEECC
Confidence 46788999999997 9999 58883 12478999999999999999999996
Q ss_pred -CCCC--CcchhHHHHHcCCCCeEEEEeccccccCCCceeeEEEEEc----CcE---EEecccCCCcccccccccccEEE
Q 009992 134 -GVYP--DFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWISD----CRD---VYIGSANNDWKSLTQVKEVGIYL 203 (520)
Q Consensus 134 -g~~~--~~~~~~~~L~~~~~gv~v~~~~~~~~~~~~~lH~K~~VvD----~~~---~~iGSaN~d~~sl~~~~E~gv~i 203 (520)
+... ......+.|.. +||+++... .+.++|+|++||| +++ +++||+|++++|+..+.|+++++
T Consensus 402 ~a~~~~~~n~~~~~~L~~--aGV~V~~~~-----~~~k~H~Ki~VID~re~~~i~~~a~iGS~N~d~rs~~~n~D~~l~i 474 (687)
T 1xdp_A 402 QARFDEEANIHWAKRLTE--AGVHVIFSA-----PGLKIHAKLFLISRKENGEVVRYAHIGTGNFNEKTARLYTDYSLLT 474 (687)
T ss_dssp TCSSTTTTTTTTTHHHHH--HTCEEEECC-----TTCEECCEEEEEEEEETTEEEEEEEEESSCSCTTGGGTEEEEEEEE
T ss_pred CcccchhhHHHHHHHHHH--CCCEEEEec-----CCccccceEEEEEeccCCeEEEEEEEeCCcCCcchhhhcceEEEEE
Confidence 3111 12234677776 689987532 3446999999999 566 99999999999999999999999
Q ss_pred ECChHHHHHHHHHHHHHHhcCCCCCCccccccchhhhhccccCCCCcccCCCCCccCCCCCCCccCCCcCCCCccCCccc
Q 009992 204 VGCPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQANRTVPCWSHFLDPKGRCRSPLPPVLEVPHVEGYPILSDPYM 283 (520)
Q Consensus 204 ~~~~~la~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~ 283 (520)
.+ +++++++.++|+.+|..+.... |.
T Consensus 475 ~~-~~i~~~l~~~F~~~~~~s~~~~--------------------~~--------------------------------- 500 (687)
T 1xdp_A 475 AD-ARITNEVRRVFNFIENPYRPVT--------------------FD--------------------------------- 500 (687)
T ss_dssp CC-HHHHHHHHHHHHHHHCTTSCCC--------------------CS---------------------------------
T ss_pred eC-HHHHHHHHHHHHHHHhhccccc--------------------hh---------------------------------
Confidence 87 8899999999999997643211 00
Q ss_pred ccccccCCCCCCCCCCCceeeeecCCCCCCCCCCcchHHHHHHHHhhcCCcC--EEEEEEeeeeeeeccccccccHHHHH
Q 009992 284 FRETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTRA--TLRISTMDWLGQSQYLKQTVYWSALS 361 (520)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~ls~sP~~~~~~~r~~~~~all~~I~~Ak~~~--~I~I~~~~y~P~~~~~~~~~~~~~i~ 361 (520)
...+ +|... +....+.+...|..|+++. +|+|.++ |+|+ +.|.
T Consensus 501 ------------------~l~~--sP~~~----~~~l~~~I~~ei~~A~~g~~~~I~i~~~-~lpD----------~~ii 545 (687)
T 1xdp_A 501 ------------------YLMV--SPQNS----RRLLYEMVDREIANAQQGLPSGITLKLN-NLVD----------KGLV 545 (687)
T ss_dssp ------------------SCEE--ETTSH----HHHHHHHHHHHHHHHHTTCCCCEEEEES-CBCC----------HHHH
T ss_pred ------------------heee--CCchh----hHHHHHHHHHHHHHHHcCCCCEEEEEeC-CCCC----------HHHH
Confidence 0011 23210 1112334445566677532 6888865 5776 7899
Q ss_pred HHHHHHHHcCCCEEEEEeccccCCCcChHHHHHHhhhccccccccCCCCCCCceeEEEEEcCCCCCCCCcccCCCCCCCC
Q 009992 362 SAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNI 441 (520)
Q Consensus 362 ~AL~~Aa~~RGV~VRILi~~~~~~~~~~~~~l~sL~~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~~~~~~ 441 (520)
+||.+|| +|||+|||||.+..+..|.. . .-..++.|+-+. .
T Consensus 546 ~AL~~Aa-~rGV~VrLivrg~c~l~pgv-------p------------~~sdni~V~s~~-~------------------ 586 (687)
T 1xdp_A 546 DRLYAAS-SSGVPVNLLVRGMCSLIPNL-------E------------GISDNIRAISIV-D------------------ 586 (687)
T ss_dssp HHHHHHH-HTTCCEEEEESSCBCBCTTC-------T------------TTSTTEEEEEEC-S------------------
T ss_pred HHHHHHH-HCCCEEEEEEecccccCCCC-------C------------CCCCCEEEEEeh-h------------------
Confidence 9999999 89999999998753322211 0 001246665432 1
Q ss_pred CCCcce-eecceeEEe---c-CeEEEccCCCCcccccccCCeeeeecChhHHHHHHHHHHhhccC-CCcccc
Q 009992 442 YPGFTR-VNHGKYAVS---D-SRAHIGTSNLVWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWNS-PYAFPV 507 (520)
Q Consensus 442 ~~~~~~-~lHaK~~Vi---D-~~a~IGS~N~d~~sf~~n~e~~l~~~~~~~~~~l~~~F~~dw~s-~ya~~l 507 (520)
+ .-|+|++.. | .+++|||+||+.|||..|.|+++.+.|+++++++.++|+.+|.. ..+..+
T Consensus 587 -----r~Leh~rI~~f~~~dd~~~~IGSAN~d~Rsl~~n~Ev~~~I~d~~~~~~l~~~f~~~l~d~~~a~~l 653 (687)
T 1xdp_A 587 -----RYLEHDRVYIFENGGDKKVYLSSADWMTRNIDYRIEVATPLLDPRLKQRVLDIIDILFSDTVKARYI 653 (687)
T ss_dssp -----SSEECCCEEEECGGGSCEEEEESCCBSHHHHHSEEEEEEECCSHHHHHHHHHHHHHHHTCCSSEEEC
T ss_pred -----HHhhCCeEEEEcCCCCCEEEEEcCccchhhhhhheeeeEEecCHHHHHHHHHHHHHhhccccccEEE
Confidence 2 348998876 4 79999999999999999999999999999999999999999963 344444
No 4
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=99.97 E-value=9.5e-31 Score=288.68 Aligned_cols=277 Identities=12% Similarity=0.103 Sum_probs=212.9
Q ss_pred cHHHHHHHHHHhccc-----EEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEec
Q 009992 58 SSGNVLKWLAGNSTK-----RLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQH 132 (520)
Q Consensus 58 ~t~~~~~~lI~~Ak~-----sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d 132 (520)
.+|++++++|++|++ +|.+. +|.+ . .+..|++||++||+|||+|++++|
T Consensus 352 ~sf~~vi~~I~~A~~DP~V~sIk~t-lYr~--~-----------------------~ds~Iv~ALi~AA~rGv~V~vLve 405 (705)
T 2o8r_A 352 YTYDYVVRLLMEAAISPDVSEIRLT-QYRV--A-----------------------ENSSIISALEAAAQSGKKVSVFVE 405 (705)
T ss_dssp BCSHHHHHHHHHHHTCTTEEEEEEE-ESCC--C-----------------------SCCHHHHHHHHHHHTTCEEEEEEC
T ss_pred HhHHHHHHHHHHhccCCCceEEEEE-EEEE--c-----------------------CCHHHHHHHHHHHHCCCEEEEEEe
Confidence 457889999999999 99988 7763 1 137899999999999999999999
Q ss_pred CCCCCC---cchhHHHHHcCCCCeEEEEeccccccCCCceeeEEEEEcCc---------EEEecccCCCccccccccccc
Q 009992 133 LGVYPD---FTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWISDCR---------DVYIGSANNDWKSLTQVKEVG 200 (520)
Q Consensus 133 ~g~~~~---~~~~~~~L~~~~~gv~v~~~~~~~~~~~~~lH~K~~VvD~~---------~~~iGSaN~d~~sl~~~~E~g 200 (520)
.++... ...+.+.|.. +||+|... ..+.++|+|++|||++ .+.+|+.||...+.....|+|
T Consensus 406 l~arfdee~ni~wa~~Le~--aGv~Vv~g-----~~~lk~H~Ki~lIdrr~~~~g~~~~y~~igtGN~n~~tariy~D~~ 478 (705)
T 2o8r_A 406 LKARFDEENNLRLSERMRR--SGIRIVYS-----MPGLKVHAKTALILYHTPAGERPQGIALLSTGNFNETTARIYSDTT 478 (705)
T ss_dssp CCSCC----CHHHHHHHHH--HTCEEEEC-----CTTCCBCCCEEEEEECCCSSSCCCEEEEEESSCSSCCCSSCEEEEE
T ss_pred CCCCcchhhhHHHHHHHHH--CCCEEEEc-----cCCCCceeEEEEEecccccCCceeEEEeccccceeeeEEEEEeeee
Confidence 754322 2345677876 68998752 2468999999999998 468899999999988899999
Q ss_pred EEEECChHHHHHHHHHHHHHHhcCCCCCCccccccchhhhhccccCCCCcccCCCCCccCCCCCCCccCCCcCCCCccCC
Q 009992 201 IYLVGCPTIAKKVEVYFENLWTLSSLNSSTYTRTVSDQQWQANRTVPCWSHFLDPKGRCRSPLPPVLEVPHVEGYPILSD 280 (520)
Q Consensus 201 v~i~~~~~la~~l~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~ 280 (520)
+++.+ ++++.+++++|...|...... .
T Consensus 479 l~t~~-~~i~~dl~~vF~~~tg~~~~~--------------------~-------------------------------- 505 (705)
T 2o8r_A 479 LMTAN-TDIVHDVYRLFRILDGDPEPA--------------------R-------------------------------- 505 (705)
T ss_dssp EEECC-HHHHHHHHHHHHHHTTCCCCS--------------------C--------------------------------
T ss_pred eeecC-hHHHHHHHHHHHHHhCCCCCC--------------------C--------------------------------
Confidence 99988 999999999998887532100 0
Q ss_pred cccccccccCCCCCCCCCCCceeeeecCCCCCCCCCCcchHHHHHHHHhhcCCc--CEEEEEEeeeeeeeccccccccHH
Q 009992 281 PYMFRETMETPGSNYSTLQPHYSYLSFAPPELSFGKYMADEQAWVDTIKSVGTR--ATLRISTMDWLGQSQYLKQTVYWS 358 (520)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~ls~sP~~~~~~~r~~~~~all~~I~~Ak~~--~~I~I~~~~y~P~~~~~~~~~~~~ 358 (520)
. ...+. ||... +....+.+...|..|+++ -+|+|.++| +|+ +
T Consensus 506 -------------------~-~~l~~-sP~~~----~~~i~~~i~~eI~~Ak~G~~a~I~ik~n~-l~D----------~ 549 (705)
T 2o8r_A 506 -------------------F-SRLLV-ARYNM----GEAITNLIEREIENVKRGKRGYMLLKMNG-LQD----------K 549 (705)
T ss_dssp -------------------C-SSCEE-TTTTH----HHHHHHHHHHHHHHHHTTCCCEEEEEESC-BCC----------H
T ss_pred -------------------c-eEEEE-CCchH----HHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCC----------H
Confidence 0 00122 55431 233467788888989852 279999886 887 7
Q ss_pred HHHHHHHHHHHcCCCEEEEEeccccCCCcChHHHHHHhhhccccccccCCCCCCCceeEEEEEcCCCCCCCCcccCCCCC
Q 009992 359 ALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNT 438 (520)
Q Consensus 359 ~i~~AL~~Aa~~RGV~VRILi~~~~~~~~~~~~~l~sL~~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~~~ 438 (520)
.|.+||.+|+ +|||+|||||-+...-.|.. . + +.++.|+-+. .
T Consensus 550 ~ii~aL~~As-~~GV~V~LIVRGiC~L~Pgv----~-~---------------sdni~V~Siv-g--------------- 592 (705)
T 2o8r_A 550 NVITQLYRAS-EAGVEIDLIVRGICCLVPDM----P-Q---------------SRNIRVTRLV-D--------------- 592 (705)
T ss_dssp HHHHHHHHHH-HTTCEEEEEESSCBCSCCSS----G-G---------------GTTEEEEECC-S---------------
T ss_pred HHHHHHHHHH-HCCCeEEEEEccccccCCCC----C-C---------------CCCeEEEeeH-H---------------
Confidence 8999999999 89999999997643323321 0 1 1236664331 1
Q ss_pred CCCCCCcce-eecceeEEe---c-CeEEEccCCCCcccccccCCeeeeecChhHHHHHHHHHHhhccC
Q 009992 439 GNIYPGFTR-VNHGKYAVS---D-SRAHIGTSNLVWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWNS 501 (520)
Q Consensus 439 ~~~~~~~~~-~lHaK~~Vi---D-~~a~IGS~N~d~~sf~~n~e~~l~~~~~~~~~~l~~~F~~dw~s 501 (520)
+ .-|+|+++. | .+++|||+||+.|||..|.|+++.+.|+++++++.++|+.+|..
T Consensus 593 --------r~Leh~RIy~f~~gd~~~~~IGSAn~m~Rnl~~r~Ev~~~i~d~~~~~~l~~i~~~~l~d 652 (705)
T 2o8r_A 593 --------MYLEHSRIWCFHNGGKEEVFISSADWMKRNLYNRIETACPVLDPTLRREIIDILEIQLRD 652 (705)
T ss_dssp --------SSEECCCEEEECGGGSCEEEEESCCBCHHHHHTSBCEEEECCSHHHHHHHHHHHHHHHHC
T ss_pred --------HHHhcCEEEEEECCCCcEEEEeccccchhhhhheeEEEEEEcCHHHHHHHHHHHHHhhhh
Confidence 2 359998887 4 79999999999999999999999999999999999999999974
No 5
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.91 E-value=5.4e-24 Score=203.18 Aligned_cols=137 Identities=16% Similarity=0.122 Sum_probs=114.0
Q ss_pred cccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 009992 56 IVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHLGV 135 (520)
Q Consensus 56 ~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d~g~ 135 (520)
..+.++.++++|++||++|+|++|+|+ .+.|+++|.+|++|||+||||+|.+.
T Consensus 44 ~~~~~~~ll~~I~~A~~sI~i~~y~~~---------------------------~~~i~~aL~~aa~rGV~Vrii~D~~~ 96 (196)
T 4ggj_A 44 SESSLSRLLRALLAARSSLELCLFAFS---------------------------SPQLGRAVQLLHQRGVRVRVITDCDY 96 (196)
T ss_dssp SCCHHHHHHHHHHTCSSEEEEEESCBC---------------------------CHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred cHHHHHHHHHHHHHhheEEEEEEEEeC---------------------------CHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 357889999999999999999965551 37899999999999999999999633
Q ss_pred CCCcchhHHHHHcCCCCeEEEEeccccccCCCceeeEEEEEcCcEEEecccCCCcccccccccccEEEECChHHHHHHHH
Q 009992 136 YPDFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANNDWKSLTQVKEVGIYLVGCPTIAKKVEV 215 (520)
Q Consensus 136 ~~~~~~~~~~L~~~~~gv~v~~~~~~~~~~~~~lH~K~~VvD~~~~~iGSaN~d~~sl~~~~E~gv~i~~~~~la~~l~~ 215 (520)
..........|.. +||+++.. ...+++|+|++|||++++++||+||+++++..|.|.++++.+ +++|+++++
T Consensus 97 ~~~~~~~~~~l~~--~gi~v~~~-----~~~~~~H~K~~viD~~~~~~GS~N~t~~~~~~n~E~~~~i~~-~~~~~~~~~ 168 (196)
T 4ggj_A 97 MALNGSQIGLLRK--AGIQVRHD-----QDLGYMHHKFAIVDKKVLITGSLNWTTQAIQNNRENVLIMED-TEYVRLFLE 168 (196)
T ss_dssp C---CCHHHHHHH--TTCEEEEC-----CSSSCCCCEEEEETTTEEEEESCCBCHHHHHHCCEEEEEECC-HHHHHHHHH
T ss_pred ccccHHHHHHHHh--cCCCcccc-----cccccccCcEEEEcceEEEecCccCChhhhcccceeEEEEEC-HHHHHHHHH
Confidence 2222234566765 68988753 235789999999999999999999999999999999999977 999999999
Q ss_pred HHHHHHhcCCCC
Q 009992 216 YFENLWTLSSLN 227 (520)
Q Consensus 216 ~F~~~W~~~~~~ 227 (520)
.|+.+|+...+.
T Consensus 169 ~F~~~W~~~~p~ 180 (196)
T 4ggj_A 169 EFERIWEEFDPT 180 (196)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHhCCCC
Confidence 999999976644
No 6
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.87 E-value=3.9e-22 Score=190.29 Aligned_cols=131 Identities=13% Similarity=0.125 Sum_probs=105.0
Q ss_pred chHHHHHHHHhhcCCcCEEEEEEeeeeeeeccccccccHHHHHHHHHHHHHcCCCEEEEEeccccCCCcChHHHHHHhhh
Q 009992 319 ADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLY 398 (520)
Q Consensus 319 ~~~~all~~I~~Ak~~~~I~I~~~~y~P~~~~~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~~~~~~~~~~~~l~sL~~ 398 (520)
...+.++++|++||+ +|+|++ |+++. +.|.+||.+|+ +|||+||||++.+...... ..+..|..
T Consensus 46 ~~~~~ll~~I~~A~~--sI~i~~-y~~~~----------~~i~~aL~~aa-~rGV~Vrii~D~~~~~~~~--~~~~~l~~ 109 (196)
T 4ggj_A 46 SSLSRLLRALLAARS--SLELCL-FAFSS----------PQLGRAVQLLH-QRGVRVRVITDCDYMALNG--SQIGLLRK 109 (196)
T ss_dssp CHHHHHHHHHHTCSS--EEEEEE-SCBCC----------HHHHHHHHHHH-HTTCEEEEEESSCCC---C--CHHHHHHH
T ss_pred HHHHHHHHHHHHhhe--EEEEEE-EEeCC----------HHHHHHHHHHH-HcCCcEEEEEecccccccH--HHHHHHHh
Confidence 357899999999999 999995 55543 68999999998 9999999999865432221 12333331
Q ss_pred ccccccccCCCCCCCceeEEEEEcCCCCCCCCcccCCCCCCCCCCCcceeecceeEEec-CeEEEccCCCCcccccccCC
Q 009992 399 SNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSD-SRAHIGTSNLVWDYFYTTAG 477 (520)
Q Consensus 399 ~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lHaK~~ViD-~~a~IGS~N~d~~sf~~n~e 477 (520)
.+++|+.+.. .+++|+|++|+| +++++||+||+.+++..|.|
T Consensus 110 --------------~gi~v~~~~~-----------------------~~~~H~K~~viD~~~~~~GS~N~t~~~~~~n~E 152 (196)
T 4ggj_A 110 --------------AGIQVRHDQD-----------------------LGYMHHKFAIVDKKVLITGSLNWTTQAIQNNRE 152 (196)
T ss_dssp --------------TTCEEEECCS-----------------------SSCCCCEEEEETTTEEEEESCCBCHHHHHHCCE
T ss_pred --------------cCCCcccccc-----------------------cccccCcEEEEcceEEEecCccCChhhhcccce
Confidence 3577776541 157899999999 89999999999999999999
Q ss_pred eeeeecChhHHHHHHHHHHhhccCC
Q 009992 478 VSFGTYNPAIVSQLQEIFDADWNSP 502 (520)
Q Consensus 478 ~~l~~~~~~~~~~l~~~F~~dw~s~ 502 (520)
..+++.++++++++++.|+++|+..
T Consensus 153 ~~~~i~~~~~~~~~~~~F~~~W~~~ 177 (196)
T 4ggj_A 153 NVLIMEDTEYVRLFLEEFERIWEEF 177 (196)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999753
No 7
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.87 E-value=4.8e-22 Score=181.19 Aligned_cols=134 Identities=19% Similarity=0.181 Sum_probs=111.5
Q ss_pred cHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 009992 58 SSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHLGVYP 137 (520)
Q Consensus 58 ~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d~g~~~ 137 (520)
..++.++++|++||++|+|++|||. .+.|+++|.+|++|||+|||++|.....
T Consensus 14 ~~~~~~~~~i~~A~~~I~i~~~~~~---------------------------~~~i~~aL~~a~~rGV~Vril~~~~~~~ 66 (155)
T 1byr_A 14 SARVLVLSAIDSAKTSIRMMAYSFT---------------------------APDIMKALVAAKKRGVDVKIVIDERGNT 66 (155)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESSBC---------------------------CHHHHHHHHHHHHTTCEEEEEEESTTCC
T ss_pred cHHHHHHHHHHHHhhEEEEEEEEeC---------------------------CHHHHHHHHHHHHCCCEEEEEEeCcccc
Confidence 4678999999999999999988881 2689999999999999999999962211
Q ss_pred C--cchhHHHHHcCCCCeEEEEeccccccCCCceeeEEEEEcCcEEEecccCCCcccccccccccEEEECChHHHHHHHH
Q 009992 138 D--FTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANNDWKSLTQVKEVGIYLVGCPTIAKKVEV 215 (520)
Q Consensus 138 ~--~~~~~~~L~~~~~gv~v~~~~~~~~~~~~~lH~K~~VvD~~~~~iGSaN~d~~sl~~~~E~gv~i~~~~~la~~l~~ 215 (520)
. .....+.|.. +|++++.+. ..+++|+|++|||++.+++||+||+++++..|.|.++.+.++|.+++++.+
T Consensus 67 ~~~~~~~~~~L~~--~gv~v~~~~-----~~~~~H~K~~iiD~~~~~iGS~N~~~~~~~~n~E~~~~i~~~~~l~~~~~~ 139 (155)
T 1byr_A 67 GRASIAAMNYIAN--SGIPLRTDS-----NFPIQHDKVIIVDNVTVETGSFNFTKAAETKNSENAVVIWNMPKLAESFLE 139 (155)
T ss_dssp SHHHHHHHHHHHH--TTCCEEEEC-----SSSCCCCCEEEETTTEEEEESCCBSHHHHHTSCEEEEEEESCHHHHHHHHH
T ss_pred ccccHHHHHHHHH--CCCeEEEcC-----CcccccceEEEECCCEEEEECCCCCccccccCcccEEEEcCcHHHHHHHHH
Confidence 1 1123455665 578887542 346899999999999999999999999999999999999986689999999
Q ss_pred HHHHHHhcCC
Q 009992 216 YFENLWTLSS 225 (520)
Q Consensus 216 ~F~~~W~~~~ 225 (520)
.|+.+|..+.
T Consensus 140 ~f~~~w~~~~ 149 (155)
T 1byr_A 140 HWQDRWNQGR 149 (155)
T ss_dssp HHHHHHHTCE
T ss_pred HHHHHHHhCC
Confidence 9999998754
No 8
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.85 E-value=5.2e-21 Score=174.33 Aligned_cols=135 Identities=13% Similarity=0.209 Sum_probs=109.6
Q ss_pred hHHHHHHHHhhcCCcCEEEEEEeeeeeeeccccccccHHHHHHHHHHHHHcCCCEEEEEeccccCCCcChHHHHHHhhhc
Q 009992 320 DEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYS 399 (520)
Q Consensus 320 ~~~all~~I~~Ak~~~~I~I~~~~y~P~~~~~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~~~~~~~~~~~~l~sL~~~ 399 (520)
..+.++++|++|++ +|+|++++| +. +.|.+||.+|+ +|||+||||++...........+++.|..
T Consensus 15 ~~~~~~~~i~~A~~--~I~i~~~~~-~~----------~~i~~aL~~a~-~rGV~Vril~~~~~~~~~~~~~~~~~L~~- 79 (155)
T 1byr_A 15 ARVLVLSAIDSAKT--SIRMMAYSF-TA----------PDIMKALVAAK-KRGVDVKIVIDERGNTGRASIAAMNYIAN- 79 (155)
T ss_dssp HHHHHHHHHHHCSS--EEEEEESSB-CC----------HHHHHHHHHHH-HTTCEEEEEEESTTCCSHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhh--EEEEEEEEe-CC----------HHHHHHHHHHH-HCCCEEEEEEeCccccccccHHHHHHHHH-
Confidence 46899999999999 999998655 43 57999999998 99999999999864322233345555542
Q ss_pred cccccccCCCCCCCceeEEEEEcCCCCCCCCcccCCCCCCCCCCCcceeecceeEEec-CeEEEccCCCCcccccccCCe
Q 009992 400 NVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSD-SRAHIGTSNLVWDYFYTTAGV 478 (520)
Q Consensus 400 ~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lHaK~~ViD-~~a~IGS~N~d~~sf~~n~e~ 478 (520)
.+++|+.+. + .+.+|+|++|+| +.+++||+||+.+++..|.|.
T Consensus 80 -------------~gv~v~~~~-~----------------------~~~~H~K~~iiD~~~~~iGS~N~~~~~~~~n~E~ 123 (155)
T 1byr_A 80 -------------SGIPLRTDS-N----------------------FPIQHDKVIIVDNVTVETGSFNFTKAAETKNSEN 123 (155)
T ss_dssp -------------TTCCEEEEC-S----------------------SSCCCCCEEEETTTEEEEESCCBSHHHHHTSCEE
T ss_pred -------------CCCeEEEcC-C----------------------cccccceEEEECCCEEEEECCCCCccccccCccc
Confidence 357787764 2 147999999998 799999999999999999999
Q ss_pred eeeecC-hhHHHHHHHHHHhhccCCCcc
Q 009992 479 SFGTYN-PAIVSQLQEIFDADWNSPYAF 505 (520)
Q Consensus 479 ~l~~~~-~~~~~~l~~~F~~dw~s~ya~ 505 (520)
++.+.+ +++++++.+.|+++|+.+...
T Consensus 124 ~~~i~~~~~l~~~~~~~f~~~w~~~~~~ 151 (155)
T 1byr_A 124 AVVIWNMPKLAESFLEHWQDRWNQGRDY 151 (155)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHTCEEC
T ss_pred EEEEcCcHHHHHHHHHHHHHHHHhCCCC
Confidence 999998 699999999999999885443
No 9
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.83 E-value=1.5e-20 Score=181.56 Aligned_cols=133 Identities=18% Similarity=0.148 Sum_probs=100.9
Q ss_pred cHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEecCCCCC
Q 009992 58 SSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHLGVYP 137 (520)
Q Consensus 58 ~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d~g~~~ 137 (520)
...+.++++|++||++|+|+.|+| ..+.|+++|++|++|||+||||+|.....
T Consensus 58 ~~~~~ii~~I~~A~~sI~i~~Y~~---------------------------~~~~I~~aL~~Aa~RGV~VRii~D~~~~~ 110 (220)
T 4gel_A 58 RNVAKIVEQIDRAVYSIDLAIYTF---------------------------TSLFLADSIKRALQRGVIIRIISDGEMVY 110 (220)
T ss_dssp HHHHHHHHHHHTCSSEEEEECSCB---------------------------CCHHHHHHHHHHHHHTCEEEEECCTTTTT
T ss_pred HHHHHHHHHHHHhhhEEEEEEEEe---------------------------CCHHHHHHHHHHHHcCCeEEEEEechhhh
Confidence 356788999999999999995444 13789999999999999999999973222
Q ss_pred CcchhHHHHHcCCCCeEEEEeccccccCCCceeeEEEEEc--------------------CcEEEecccCCCcccccccc
Q 009992 138 DFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWISD--------------------CRDVYIGSANNDWKSLTQVK 197 (520)
Q Consensus 138 ~~~~~~~~L~~~~~gv~v~~~~~~~~~~~~~lH~K~~VvD--------------------~~~~~iGSaN~d~~sl~~~~ 197 (520)
........+.. +++.++.. ...+++|.|++||| ++++++||+||+++++..|.
T Consensus 111 ~~~~~~~~~~~--~~~~~~~~-----~~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~D~~~v~~GS~N~t~~s~~~N~ 183 (220)
T 4gel_A 111 SKGSQISMLAQ--LGVPVRVP-----ITTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCYSIVISGSVNWTALGLGGNW 183 (220)
T ss_dssp STTCHHHHHHH--TTCCEEEC-----CSSSCBCCCEEEESCHHHHHHHHHHTTCSCCCCCCCEEEEESCCBSHHHHHTSB
T ss_pred hhHHHHHHHHh--cCCcEEee-----cccccccceeEEEcchhcccccccccceeccccccceEEecCccccccccccCc
Confidence 22223344443 34444431 12345566655555 68999999999999999999
Q ss_pred cccEEEECChHHHHHHHHHHHHHHhcCC
Q 009992 198 EVGIYLVGCPTIAKKVEVYFENLWTLSS 225 (520)
Q Consensus 198 E~gv~i~~~~~la~~l~~~F~~~W~~~~ 225 (520)
|.++++.+ +++|+++++.|+++|+...
T Consensus 184 E~~~vi~~-~~~a~~~~~~F~~~W~~~~ 210 (220)
T 4gel_A 184 ENCIITAD-DKLTATFQAEFQRMWRAFA 210 (220)
T ss_dssp EEEEEECC-HHHHHHHHHHHHHHHHHSE
T ss_pred eEEEEEEC-HHHHHHHHHHHHHHHHhcc
Confidence 99999976 9999999999999998643
No 10
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.81 E-value=4.3e-20 Score=178.43 Aligned_cols=150 Identities=11% Similarity=0.049 Sum_probs=99.4
Q ss_pred hHHHHHHHHhhcCCcCEEEEEEeeeeeeeccccccccHHHHHHHHHHHHHcCCCEEEEEeccccCCCcChHHHHHHhhhc
Q 009992 320 DEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYS 399 (520)
Q Consensus 320 ~~~all~~I~~Ak~~~~I~I~~~~y~P~~~~~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~~~~~~~~~~~~l~sL~~~ 399 (520)
..+.|+++|++|++ +|+|+ +|+++. +.|.+||.+|| +|||+||||++.+....... .+..+..
T Consensus 59 ~~~~ii~~I~~A~~--sI~i~-~Y~~~~----------~~I~~aL~~Aa-~RGV~VRii~D~~~~~~~~~--~~~~~~~- 121 (220)
T 4gel_A 59 NVAKIVEQIDRAVY--SIDLA-IYTFTS----------LFLADSIKRAL-QRGVIIRIISDGEMVYSKGS--QISMLAQ- 121 (220)
T ss_dssp HHHHHHHHHHTCSS--EEEEE-CSCBCC----------HHHHHHHHHHH-HHTCEEEEECCTTTTTSTTC--HHHHHHH-
T ss_pred HHHHHHHHHHHhhh--EEEEE-EEEeCC----------HHHHHHHHHHH-HcCCeEEEEEechhhhhhHH--HHHHHHh-
Confidence 35789999999999 99998 477654 58999999998 99999999998764332221 1222221
Q ss_pred cccccccCCCCCCCceeEEEEEcCCCCCCCCcccCCCCCCCCCCCcceeecceeEEec-CeEEEccCCCCcccccccCCe
Q 009992 400 NVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSD-SRAHIGTSNLVWDYFYTTAGV 478 (520)
Q Consensus 400 ~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lHaK~~ViD-~~a~IGS~N~d~~sf~~n~e~ 478 (520)
.++.++.+..+........+..|.. ........+|.|++++| +++++||+||+.+++..|.|.
T Consensus 122 -------------~~~~~~~~~~~~~~h~K~~viD~~~---~~~~~~~~~H~K~~v~D~~~v~~GS~N~t~~s~~~N~E~ 185 (220)
T 4gel_A 122 -------------LGVPVRVPITTNLMHNKFCIIDGFE---RVEEIRLLRKLKFMRPCYSIVISGSVNWTALGLGGNWEN 185 (220)
T ss_dssp -------------TTCCEEECCSSSCBCCCEEEESCHH---HHHHHHHHTTCSCCCCCCCEEEEESCCBSHHHHHTSBEE
T ss_pred -------------cCCcEEeecccccccceeEEEcchh---cccccccccceeccccccceEEecCccccccccccCceE
Confidence 1233333221100000000000000 00000124555555555 689999999999999999999
Q ss_pred eeeecChhHHHHHHHHHHhhccCC
Q 009992 479 SFGTYNPAIVSQLQEIFDADWNSP 502 (520)
Q Consensus 479 ~l~~~~~~~~~~l~~~F~~dw~s~ 502 (520)
.+++.++++++++++.|+++|++.
T Consensus 186 ~~vi~~~~~a~~~~~~F~~~W~~~ 209 (220)
T 4gel_A 186 CIITADDKLTATFQAEFQRMWRAF 209 (220)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHHS
T ss_pred EEEEECHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999864
No 11
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=99.76 E-value=9.7e-19 Score=187.00 Aligned_cols=136 Identities=17% Similarity=0.148 Sum_probs=108.8
Q ss_pred ccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEecCCC-
Q 009992 57 VSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHLGV- 135 (520)
Q Consensus 57 ~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d~g~- 135 (520)
....+.++++|.+||++|+|+|+||. +++.++++|..|++|||+|||+++...
T Consensus 257 ~~i~~~~~~lI~~A~~~I~I~tpYf~--------------------------p~~~~~~aL~~Aa~rGV~VrIi~~~~~a 310 (458)
T 3hsi_A 257 NELNQVIEDLFLQVQKKLVICTPYFN--------------------------FPRTLQHKIATLLENGKRVEIIVGDKVA 310 (458)
T ss_dssp CHHHHHHHHHHHTCSSEEEEECSSSC--------------------------CCHHHHHHHHHHHTTTCEEEEEEECGGG
T ss_pred hHHHHHHHHHHHhcccEEEEEEeccC--------------------------CCHHHHHHHHHHHHCCCeEEEEECCccc
Confidence 35778999999999999999999993 358999999999999999999998621
Q ss_pred ---C--CC----cch---hH------------HHHHcCCCC-eEEEEeccccccCCCceeeEEEEEcCcEEEecccCCCc
Q 009992 136 ---Y--PD----FTT---EA------------SNLASGRKN-VENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANNDW 190 (520)
Q Consensus 136 ---~--~~----~~~---~~------------~~L~~~~~g-v~v~~~~~~~~~~~~~lH~K~~VvD~~~~~iGSaN~d~ 190 (520)
+ +. ... .. ..|.. +| ++++.+. +..+.+|+|++|||+++++|||+|||.
T Consensus 311 nd~y~~~~~~~~~~~~~~~lye~~~~~f~~~~~~l~~--~G~i~V~i~~----~~~~~lHaK~~vvD~~~~~vGS~N~d~ 384 (458)
T 3hsi_A 311 NDFYIPPEQPFKMAGALPYLYESNLRRFCEKFETQIE--SGQLVVRLWR----DGDNTYHLKGVWVDDRYILLTGNNLNP 384 (458)
T ss_dssp STTCCCTTSCCCGGGGHHHHHHHHHHHHHHHTHHHHH--HTSEEEEEEC----BTTBEECCCEEEETTTEEEEECCCCSH
T ss_pred cCCccCCcchhhhhcchHHHHHHhhhhhHHHHHHHHh--CCCeEEEEEe----cCCCceeEEEEEECCeEEEecCCCCCc
Confidence 0 00 001 11 12332 35 4443321 357899999999999999999999999
Q ss_pred ccccccccccEEEECChH--HHHHHHHHHHHHHhcCC
Q 009992 191 KSLTQVKEVGIYLVGCPT--IAKKVEVYFENLWTLSS 225 (520)
Q Consensus 191 ~sl~~~~E~gv~i~~~~~--la~~l~~~F~~~W~~~~ 225 (520)
||+..|.|++++|++ ++ +++++.+.|+.+|..+.
T Consensus 385 RS~~lN~E~~~~i~~-~~~~l~~~l~~~f~~~~~~s~ 420 (458)
T 3hsi_A 385 RAWRLDAENGLLIYD-PQQQLLAQVEKEQNQIRQHTK 420 (458)
T ss_dssp HHHHTCEEEEEEEEC-TTCSSHHHHHHHHHHHHTTEE
T ss_pred chhhhCceeEEEEeC-CcHHHHHHHHHHHHHHHHhCe
Confidence 999999999999998 54 99999999999998765
No 12
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=99.63 E-value=1.4e-15 Score=164.79 Aligned_cols=145 Identities=20% Similarity=0.279 Sum_probs=101.2
Q ss_pred cHHHHHHHHHHhcccEEEEEEEEeeec-cCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEecCCCC
Q 009992 58 SSGNVLKWLAGNSTKRLDIIAQYWQLI-ARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHLGVY 136 (520)
Q Consensus 58 ~t~~~~~~lI~~Ak~sI~I~s~Y~~l~-~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d~g~~ 136 (520)
.+.++++++|.+||++|+|+++||+.- .+ +..+++.|+++|.+|++|||+|||+++....
T Consensus 314 ~~~~~~~~~I~~A~~~I~I~tq~~~pyf~p-------------------~~~~~~~i~~aL~~Aa~rGV~VrIl~~~~~~ 374 (506)
T 1v0w_A 314 PEESALRALVASAKGHIEISQQDLNATCPP-------------------LPRYDIRLYDALAAKMAAGVKVRIVVSDPAN 374 (506)
T ss_dssp HHHHHHHHHHHTCSSEEEEEESCSSCCTTT-------------------SCSCCHHHHHHHHHHHHTTCEEEEEECCGGG
T ss_pred cHHHHHHHHHhCcCcEEEEEeccccccccC-------------------cccchHHHHHHHHHHHhCCCcEEEEeCCCCc
Confidence 578899999999999999998444210 10 0133689999999999999999999985211
Q ss_pred -CC-----cch--hHHH----HHcC----CC-----------CeEEEEecc---cccc--CCCceeeEEEEEcCcEEEec
Q 009992 137 -PD-----FTT--EASN----LASG----RK-----------NVENVTLLL---GDWW--GSGIVHAKVWISDCRDVYIG 184 (520)
Q Consensus 137 -~~-----~~~--~~~~----L~~~----~~-----------gv~v~~~~~---~~~~--~~~~lH~K~~VvD~~~~~iG 184 (520)
.. ... .+.+ +..+ .+ ++++..+.. ..+. ..+.+|+|++|||+++++||
T Consensus 375 ~~~~~~a~~~~~~~L~~~~~~l~~gv~ll~~g~~e~~~~~~~~l~i~~~~~~~~~~~~~~~~~~lHaK~~vvD~~~~~vG 454 (506)
T 1v0w_A 375 RGAVGSGGYSQIKSLSEISDTLRNRLANITGGQQAAKTAMCSNLQLATFRSSPNGKWADGHPYAQHHKLVSVDSSTFYIG 454 (506)
T ss_dssp CC------CCCCSCTHHHHHHHHHHHHHHHTSHHHHHHHHHHHEEEEECCSSSSSSCTTSCCCCBCCEEEEETTTEEEEE
T ss_pred hHHHHHhHHHHHHHHHHhhhhhcccchhcccccchhccccccceeeeeccccCccccccCccccceEEEEEECCcEEEEe
Confidence 00 000 0000 0000 01 235533210 1111 15689999999999999999
Q ss_pred ccCCCcccccccccccEEEECChHHHHHHHHHHHHH-HhcCC
Q 009992 185 SANNDWKSLTQVKEVGIYLVGCPTIAKKVEVYFENL-WTLSS 225 (520)
Q Consensus 185 SaN~d~~sl~~~~E~gv~i~~~~~la~~l~~~F~~~-W~~~~ 225 (520)
|+|||.+|++ |++++|++ +++++++.+.|+++ |..+.
T Consensus 455 S~N~d~rS~~---E~~l~i~~-~~~a~~l~~~f~~~~w~~s~ 492 (506)
T 1v0w_A 455 SKNLYPSWLQ---DFGYIVES-PEAAKQLDAKLLDPQWKYSQ 492 (506)
T ss_dssp SCCSSCCCSB---CEEEEEEC-HHHHHHHHHHTHHHHHHHHG
T ss_pred CCCCCCcchh---hceeEecC-HHHHHHHHHHHHHHHHhhcc
Confidence 9999999994 99999998 99999999999975 87543
No 13
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.60 E-value=1.5e-15 Score=168.75 Aligned_cols=135 Identities=18% Similarity=0.199 Sum_probs=103.9
Q ss_pred HHHHHHHHhhcCCc---CEEEEEEeeee-eeeccccccccHHHHHHHHHHHHHcCCCEEEEEeccccCCCc-ChHHHHHH
Q 009992 321 EQAWVDTIKSVGTR---ATLRISTMDWL-GQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFIN-NTDEYLKS 395 (520)
Q Consensus 321 ~~all~~I~~Ak~~---~~I~I~~~~y~-P~~~~~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~~~~~~~-~~~~~l~s 395 (520)
.++++++|++|++. .+|+| ++|++ |+ ..|.+||++|| +|||+||||++.+...+. ....+++.
T Consensus 349 f~~v~~~I~~A~~dp~v~~I~i-t~Y~~~~d----------~~I~~AL~~AA-~rGV~VrVLvd~~a~~~~~~n~~~~~~ 416 (687)
T 1xdp_A 349 FEHVLELLRQASFDPSVLAIKI-NIYRVAKD----------SRIIDSMIHAA-HNGKKVTVVVELQARFDEEANIHWAKR 416 (687)
T ss_dssp THHHHHHHHHHHHCTTEEEEEE-EESSCCTT----------CHHHHHHHHHH-HTTCEEEEEECTTCSSTTTTTTTTTHH
T ss_pred hhhHHHHHHHHhhCCcceEEEE-EeeeecCc----------HHHHHHHHHHH-hcCCEEEEEECCCcccchhhHHHHHHH
Confidence 46899999999841 16889 78887 54 47999999999 899999999997653221 11234555
Q ss_pred hhhccccccccCCCCCCCceeEEEEEcCCCCCCCCcccCCCCCCCCCCCcceeecceeEEecC--------eEEEccCCC
Q 009992 396 LLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSDS--------RAHIGTSNL 467 (520)
Q Consensus 396 L~~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lHaK~~ViD~--------~a~IGS~N~ 467 (520)
|.. .+++|..+. |+ -.+|+|++|+|+ +++|||+||
T Consensus 417 L~~--------------aGV~V~~~~-~~----------------------~k~H~Ki~VID~re~~~i~~~a~iGS~N~ 459 (687)
T 1xdp_A 417 LTE--------------AGVHVIFSA-PG----------------------LKIHAKLFLISRKENGEVVRYAHIGTGNF 459 (687)
T ss_dssp HHH--------------HTCEEEECC-TT----------------------CEECCEEEEEEEEETTEEEEEEEEESSCS
T ss_pred HHH--------------CCCEEEEec-CC----------------------ccccceEEEEEeccCCeEEEEEEEeCCcC
Confidence 542 235554432 21 249999999982 499999999
Q ss_pred CcccccccCCeeeeecChhHHHHHHHHHHhhccCCCc
Q 009992 468 VWDYFYTTAGVSFGTYNPAIVSQLQEIFDADWNSPYA 504 (520)
Q Consensus 468 d~~sf~~n~e~~l~~~~~~~~~~l~~~F~~dw~s~ya 504 (520)
+.+|+..|.|+++.+.+++++++++++|+.+|..+..
T Consensus 460 d~rs~~~n~D~~l~i~~~~i~~~l~~~F~~~~~~s~~ 496 (687)
T 1xdp_A 460 NEKTARLYTDYSLLTADARITNEVRRVFNFIENPYRP 496 (687)
T ss_dssp CTTGGGTEEEEEEEECCHHHHHHHHHHHHHHHCTTSC
T ss_pred CcchhhhcceEEEEEeCHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999986543
No 14
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=99.26 E-value=1.9e-11 Score=135.25 Aligned_cols=127 Identities=17% Similarity=0.203 Sum_probs=103.3
Q ss_pred cHHHHHHHHHHhccc----EEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEecC
Q 009992 58 SSGNVLKWLAGNSTK----RLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHL 133 (520)
Q Consensus 58 ~t~~~~~~lI~~Ak~----sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d~ 133 (520)
...+.+...|.+||+ +|+|.++|+ +++.|+++|..|++|||+|++++-+
T Consensus 519 ~i~~~i~~eI~~Ak~G~~a~I~ik~n~l---------------------------~D~~ii~aL~~As~~GV~V~LIVRG 571 (705)
T 2o8r_A 519 AITNLIEREIENVKRGKRGYMLLKMNGL---------------------------QDKNVITQLYRASEAGVEIDLIVRG 571 (705)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEESCB---------------------------CCHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEcCCC---------------------------CCHHHHHHHHHHHHCCCeEEEEEcc
Confidence 345666778899999 999998886 1389999999999999999999964
Q ss_pred CC--CCCcchhHHHHHcCCCCeEEEEeccccccCCCceeeEEEEE---cCcEEEecccCCCcccccccccccEEEECChH
Q 009992 134 GV--YPDFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWIS---DCRDVYIGSANNDWKSLTQVKEVGIYLVGCPT 208 (520)
Q Consensus 134 g~--~~~~~~~~~~L~~~~~gv~v~~~~~~~~~~~~~lH~K~~Vv---D~~~~~iGSaN~d~~sl~~~~E~gv~i~~~~~ 208 (520)
-+ .|. .. +. .++.|+.+ ++...-|+|++++ |++.+||||+||+.|||..+.|+++.+++ +.
T Consensus 572 iC~L~Pg----v~-~s---dni~V~Si-----vgr~Leh~RIy~f~~gd~~~~~IGSAn~m~Rnl~~r~Ev~~~i~d-~~ 637 (705)
T 2o8r_A 572 ICCLVPD----MP-QS---RNIRVTRL-----VDMYLEHSRIWCFHNGGKEEVFISSADWMKRNLYNRIETACPVLD-PT 637 (705)
T ss_dssp CBCSCCS----SG-GG---TTEEEEEC-----CSSSEECCCEEEECGGGSCEEEEESCCBCHHHHHTSBCEEEECCS-HH
T ss_pred ccccCCC----CC-CC---CCeEEEee-----HHHHHhcCEEEEEECCCCcEEEEeccccchhhhhheeEEEEEEcC-HH
Confidence 11 121 11 22 36777642 3444569999999 88999999999999999999999999998 99
Q ss_pred HHHHHHHHHHHHHhcCC
Q 009992 209 IAKKVEVYFENLWTLSS 225 (520)
Q Consensus 209 la~~l~~~F~~~W~~~~ 225 (520)
+++++.++|+.+|....
T Consensus 638 ~~~~l~~i~~~~l~d~~ 654 (705)
T 2o8r_A 638 LRREIIDILEIQLRDNI 654 (705)
T ss_dssp HHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHhhhhhh
Confidence 99999999999998654
No 15
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=98.42 E-value=1.4e-07 Score=97.04 Aligned_cols=117 Identities=7% Similarity=0.038 Sum_probs=87.9
Q ss_pred chHHHHHHHHhhcCCcCEEEEEEeeeeeeeccccccccHHHHHHHHHHHHHcCCCEEEEEeccccCCCcChHHHHHHhhh
Q 009992 319 ADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLY 398 (520)
Q Consensus 319 ~~~~all~~I~~Ak~~~~I~I~~~~y~P~~~~~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~~~~~~~~~~~~l~sL~~ 398 (520)
...+.+.++|.+|++ +|++.+++. +.+.+..+|.+|+ +|||+|+++++.. .++.. ...
T Consensus 119 ~I~~ri~eli~~A~~--eI~i~~~~~-----------~l~~l~~~L~~a~-~RGV~Vrvi~~~~--~d~a~------~~~ 176 (342)
T 3qph_A 119 EAIEMFRESLYSAKN--EVIVVTPSE-----------FFETIREDLIKTL-ERGVTVSLYIDKI--PDLSE------FKG 176 (342)
T ss_dssp HHHHHHHHHHHHCSS--EEEEEECHH-----------HHHHHHHHHHHHH-HTTCEEEEEESSC--CCCGG------GSS
T ss_pred HHHHHHHHHHHhhhe--EEEEEeCHH-----------HHHHHHHHHHHHH-hCCCEEEEEECCC--CChhh------hhc
Confidence 456788999999999 999986431 1257888999887 9999999999763 23321 110
Q ss_pred ccccccccCCCCCCCceeEEEEEcCCCCCCCCcccCCCCCCCCCCCcceeecceeEEec-CeEEEccCCC-Cc---cccc
Q 009992 399 SNVLCNSSKYNKCSGKVEIKYYKVPGYNLTGPAIQNGSNTGNIYPGFTRVNHGKYAVSD-SRAHIGTSNL-VW---DYFY 473 (520)
Q Consensus 399 ~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lHaK~~ViD-~~a~IGS~N~-d~---~sf~ 473 (520)
.....+||.+. +. .+ ++|+| +.+++|+.|+ +. +||.
T Consensus 177 ------------~~~~~~vR~~~-~~----------------------p~----l~ivD~~~alv~~~~~~~~~~~rS~~ 217 (342)
T 3qph_A 177 ------------KGNFFVRQFYK-LN----------------------HL----IGMTDGKEVVTIQNATFDSIGPPSFK 217 (342)
T ss_dssp ------------SSEEEEEECSC-CC----------------------SE----EEEETTTEEEEECSSSCCSSCCCEEE
T ss_pred ------------cccceEEEEcC-CC----------------------cE----EEEEECCEEEEecccccccccccccc
Confidence 01235677664 31 23 37778 8999999998 44 8999
Q ss_pred ccCCeeeeecChhHHHHHHHHHHhhc
Q 009992 474 TTAGVSFGTYNPAIVSQLQEIFDADW 499 (520)
Q Consensus 474 ~n~e~~l~~~~~~~~~~l~~~F~~dw 499 (520)
.++| ++++.++.+ .+...|+..|
T Consensus 218 ~~~e-aliv~~~~l--~l~~~f~~~w 240 (342)
T 3qph_A 218 STYP-EIIFSQYSL--IIEIFKESTL 240 (342)
T ss_dssp ECCH-HHHHHHHHH--HHHHHHHCEE
T ss_pred cccc-EEEEECHHH--HHHHHHhhee
Confidence 9999 889999999 9999999999
No 16
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=98.27 E-value=6.1e-07 Score=92.23 Aligned_cols=119 Identities=12% Similarity=0.075 Sum_probs=85.9
Q ss_pred ccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEecCCCC
Q 009992 57 VSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHLGVY 136 (520)
Q Consensus 57 ~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d~g~~ 136 (520)
..+.+.+.++|.+|+++|++..++- .-+.+.++|.+|++|||+|+++++..
T Consensus 118 ~~I~~ri~eli~~A~~eI~i~~~~~---------------------------~l~~l~~~L~~a~~RGV~Vrvi~~~~-- 168 (342)
T 3qph_A 118 DEAIEMFRESLYSAKNEVIVVTPSE---------------------------FFETIREDLIKTLERGVTVSLYIDKI-- 168 (342)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEECHH---------------------------HHHHHHHHHHHHHHTTCEEEEEESSC--
T ss_pred HHHHHHHHHHHHhhheEEEEEeCHH---------------------------HHHHHHHHHHHHHhCCCEEEEEECCC--
Confidence 4677888999999999999885332 12678889999999999999999742
Q ss_pred CCcchhHHHHHcCCCCeEEEEeccccccCCCceeeEEEEEcCcEEEecccCC-Cc---ccccccccccEEEECChHHHHH
Q 009992 137 PDFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANN-DW---KSLTQVKEVGIYLVGCPTIAKK 212 (520)
Q Consensus 137 ~~~~~~~~~L~~~~~gv~v~~~~~~~~~~~~~lH~K~~VvD~~~~~iGSaN~-d~---~sl~~~~E~gv~i~~~~~la~~ 212 (520)
+.. .. +.....+..++..+ ...+ ++|+|++.+.+|+.|+ +. +|+..++| ++.+.+ +.+ .
T Consensus 169 ~d~-a~---~~~~~~~~~vR~~~-----~~p~----l~ivD~~~alv~~~~~~~~~~~rS~~~~~e-aliv~~-~~l--~ 231 (342)
T 3qph_A 169 PDL-SE---FKGKGNFFVRQFYK-----LNHL----IGMTDGKEVVTIQNATFDSIGPPSFKSTYP-EIIFSQ-YSL--I 231 (342)
T ss_dssp CCC-GG---GSSSSEEEEEECSC-----CCSE----EEEETTTEEEEECSSSCCSSCCCEEEECCH-HHHHHH-HHH--H
T ss_pred CCh-hh---hhccccceEEEEcC-----CCcE----EEEEECCEEEEecccccccccccccccccc-EEEEEC-HHH--H
Confidence 111 11 11111223333211 1223 5999999999999998 44 89999998 888866 667 8
Q ss_pred HHHHHHHHH
Q 009992 213 VEVYFENLW 221 (520)
Q Consensus 213 l~~~F~~~W 221 (520)
+...|+.+|
T Consensus 232 l~~~f~~~w 240 (342)
T 3qph_A 232 IEIFKESTL 240 (342)
T ss_dssp HHHHHHCEE
T ss_pred HHHHHhhee
Confidence 899999999
No 17
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=97.54 E-value=0.00035 Score=67.18 Aligned_cols=110 Identities=14% Similarity=0.188 Sum_probs=78.2
Q ss_pred ccccccccHHHHHHHHHHHHHcCCCEEEEEeccccCCCcChHHHHHHhhhccccccccCCCCCCCceeEEEEEcCCCCCC
Q 009992 349 QYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVPGYNLT 428 (520)
Q Consensus 349 ~~~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~~~~~~~~~~~~l~sL~~~~~l~~~~~~~~~~~~i~Vr~~~~p~~~~~ 428 (520)
.|....++.|.+. ++. .||++|++++.+.-...-.+...+..+.. | ++++++++.
T Consensus 46 nYnGgvrfy~~f~----~h~-~~Ggkv~~IlGgstsQrlTSKQavEElL~------------c--Gvev~IiNr------ 100 (358)
T 2c1l_A 46 NYNGGVRFYETFT----EHI-NQGGRVIAILGGSTSQRLSSRQVVEELLN------------R--GVEVHIINR------ 100 (358)
T ss_dssp CGGGTTTTHHHHH----HHH-HTTCEEEEEEECCSSSCCBBHHHHHHHHH------------T--TCEEEEEEC------
T ss_pred ccCCceeecHHHH----HHH-hcCCcEEEEEcccccccccHHHHHHHHHh------------c--CCceEEeee------
Confidence 3554555666554 444 79999999998754333344455555542 2 489999973
Q ss_pred CCcccCCCCCCCCCCCcceeecceeEEe---c-CeEEEccCCCCcccccccCCeeeeecChhHH-------HHHHHHHHh
Q 009992 429 GPAIQNGSNTGNIYPGFTRVNHGKYAVS---D-SRAHIGTSNLVWDYFYTTAGVSFGTYNPAIV-------SQLQEIFDA 497 (520)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~lHaK~~Vi---D-~~a~IGS~N~d~~sf~~n~e~~l~~~~~~~~-------~~l~~~F~~ 497 (520)
.+.+|+|.... | ...+|||.||+.--+..|.|+++.+++.... .-+..++.+
T Consensus 101 -----------------kRi~HaK~Yg~~~n~g~~LIV~SgNfT~pGmsQNvE~sllld~~Tt~~mgf~w~~m~~~m~~q 163 (358)
T 2c1l_A 101 -----------------KRILHAKLYGTSNNLGESLVVSSGNFTGPGMSQNIEASLLLDNNTTQSMGFSWNDMISEMLNQ 163 (358)
T ss_dssp -----------------SSCBCCEEEEEEETTEEEEEEESCCBSTTTTTTSBEEEEEECHHHHHHHTCCHHHHHHHHTTS
T ss_pred -----------------eeecchhhhcccCCCceEEEEecCCccccccccceeEEEEEcCCCccccCccHHHHHHHHHhc
Confidence 26899997765 4 5688899999999999999999998876432 346677777
Q ss_pred hcc
Q 009992 498 DWN 500 (520)
Q Consensus 498 dw~ 500 (520)
-|+
T Consensus 164 ~w~ 166 (358)
T 2c1l_A 164 NWH 166 (358)
T ss_dssp CCE
T ss_pred cce
Confidence 774
No 18
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=97.21 E-value=0.00094 Score=64.26 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHhhCCCeEEEEecCCCCC---CcchhHHHHHcCCCCeEEEEeccccccCCCceeeEEEEE---cCcEEEe
Q 009992 110 GFDVYKSIENAADRNVRVRLLQHLGVYP---DFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWIS---DCRDVYI 183 (520)
Q Consensus 110 g~~i~~aL~~aa~rGV~VrIl~d~g~~~---~~~~~~~~L~~~~~gv~v~~~~~~~~~~~~~lH~K~~Vv---D~~~~~i 183 (520)
|-++...+.+...+|++|++++.+ +.. +.....++|.+ -||+++-++ ....+|.|+... |+..+.+
T Consensus 50 gvrfy~~f~~h~~~Ggkv~~IlGg-stsQrlTSKQavEElL~--cGvev~IiN-----rkRi~HaK~Yg~~~n~g~~LIV 121 (358)
T 2c1l_A 50 GVRFYETFTEHINQGGRVIAILGG-STSQRLSSRQVVEELLN--RGVEVHIIN-----RKRILHAKLYGTSNNLGESLVV 121 (358)
T ss_dssp TTTTHHHHHHHHHTTCEEEEEEEC-CSSSCCBBHHHHHHHHH--TTCEEEEEE-----CSSCBCCEEEEEEETTEEEEEE
T ss_pred ceeecHHHHHHHhcCCcEEEEEcc-cccccccHHHHHHHHHh--cCCceEEee-----eeeecchhhhcccCCCceEEEE
Confidence 467888888899999999999974 211 22234567766 477777654 346899999988 8889999
Q ss_pred cccCCCcccccccccccEEEECChHHHHH
Q 009992 184 GSANNDWKSLTQVKEVGIYLVGCPTIAKK 212 (520)
Q Consensus 184 GSaN~d~~sl~~~~E~gv~i~~~~~la~~ 212 (520)
||.|++...+.+|-|+.+++.+ ...+.
T Consensus 122 ~SgNfT~pGmsQNvE~sllld~--~Tt~~ 148 (358)
T 2c1l_A 122 SSGNFTGPGMSQNIEASLLLDN--NTTQS 148 (358)
T ss_dssp ESCCBSTTTTTTSBEEEEEECH--HHHHH
T ss_pred ecCCccccccccceeEEEEEcC--CCccc
Confidence 9999999999999999999976 44443
No 19
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=96.21 E-value=0.014 Score=56.46 Aligned_cols=84 Identities=10% Similarity=0.022 Sum_probs=58.8
Q ss_pred cccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhhCCCeEEEEecCCC
Q 009992 56 IVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVYKSIENAADRNVRVRLLQHLGV 135 (520)
Q Consensus 56 ~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~~aL~~aa~rGV~VrIl~d~g~ 135 (520)
...+.+...++|++|+++|.+. +| . ..-+.|.++|.+|.+|||.|.+++.+..
T Consensus 8 ~e~Ii~r~~e~I~~A~~el~ls--i~---~----------------------e~l~~l~~~L~~A~~rGV~V~liv~~~~ 60 (233)
T 2f5t_X 8 FDEAIEMFRESLYSAKNEVIVV--TP---S----------------------EFFETIREDLIKTLERGVTVSLYIDKIP 60 (233)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEE--EC---G----------------------GGHHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred HHHHHHHHHHHHHHhhhEEEEE--eC---H----------------------HHHHHHHHHHHHHHHCCCEEEEEEcCCc
Confidence 3456678889999999999996 33 1 2347899999999999999999997411
Q ss_pred CCCcchhHHHHHcCCCCeE-EEEeccccccCCCceeeEEEEEcCcEEE
Q 009992 136 YPDFTTEASNLASGRKNVE-NVTLLLGDWWGSGIVHAKVWISDCRDVY 182 (520)
Q Consensus 136 ~~~~~~~~~~L~~~~~gv~-v~~~~~~~~~~~~~lH~K~~VvD~~~~~ 182 (520)
....+.. .+-. ++.. .+ -+-+++++|++.+.
T Consensus 61 ------~~~~l~~--~~~~~vr~~-------~~-~~p~~vi~D~~e~l 92 (233)
T 2f5t_X 61 ------DLSEFKG--KGNFFVRQF-------YK-LNHLIGMTDGKEVV 92 (233)
T ss_dssp ------CCGGGTT--SSEEEEEEC-------SC-CCSEEEEETTTEEE
T ss_pred ------chhhhcc--cceEEEEEc-------cC-CCcEEEEEEchhhc
Confidence 1112322 2333 4421 12 35779999999998
No 20
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=95.27 E-value=0.026 Score=54.53 Aligned_cols=50 Identities=6% Similarity=0.185 Sum_probs=41.1
Q ss_pred cchHHHHHHHHhhcCCcCEEEEEEeeeeeeeccccccccHHHHHHHHHHHHHcCCCEEEEEecc
Q 009992 318 MADEQAWVDTIKSVGTRATLRISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAY 381 (520)
Q Consensus 318 ~~~~~all~~I~~Ak~~~~I~I~~~~y~P~~~~~~~~~~~~~i~~AL~~Aa~~RGV~VRILi~~ 381 (520)
....+.+.++|++|++ .|+++.+. +..+.|.++|++|+ +|||.|.|++.+
T Consensus 9 e~Ii~r~~e~I~~A~~--el~lsi~~-----------e~l~~l~~~L~~A~-~rGV~V~liv~~ 58 (233)
T 2f5t_X 9 DEAIEMFRESLYSAKN--EVIVVTPS-----------EFFETIREDLIKTL-ERGVTVSLYIDK 58 (233)
T ss_dssp HHHHHHHHHHHHTCSS--EEEEEECG-----------GGHHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred HHHHHHHHHHHHHhhh--EEEEEeCH-----------HHHHHHHHHHHHHH-HCCCEEEEEEcC
Confidence 3456788999999999 99997531 23378999999987 999999999986
No 21
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=65.61 E-value=7.4 Score=41.07 Aligned_cols=80 Identities=20% Similarity=0.135 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhCCCeEEEEecCCCCCCcchhHHHHHcCCCCeEEEEeccccccCCCceeeEEEEE---cCcEEEecccC
Q 009992 111 FDVYKSIENAADRNVRVRLLQHLGVYPDFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWIS---DCRDVYIGSAN 187 (520)
Q Consensus 111 ~~i~~aL~~aa~rGV~VrIl~d~g~~~~~~~~~~~L~~~~~gv~v~~~~~~~~~~~~~lH~K~~Vv---D~~~~~iGSaN 187 (520)
+-|+..+-.. -|.++|.|+..... ........-.....+|++...+.+. .-|.+|+|+||. |+-.++|-|||
T Consensus 65 ~WLl~~~~~~-~~~~~v~iv~g~~~--~~~~~l~~~~~~~~nv~~~~p~mp~--~fGthHsKmmiL~y~~glRVVI~TAN 139 (464)
T 1jy1_A 65 DWLVKQYPPE-FRKKPILLVHGDKR--EAKAHLHAQAKPYENISLCQAKLDI--AFGTHHTKMMLLLYEEGLRVVIHTSN 139 (464)
T ss_dssp HHHHHHSCGG-GTTSCEEEEECCCH--HHHHHHHHHHTTCTTEEEEECCCCS--TTCCBCCCEEEEEESSCEEEEEECCC
T ss_pred HHHHhhCccc-ccCCcEEEEeCCCc--ccchhhHHhhccCCCeEEEeCCCCC--cccccchhhheeecCCceEEEEeCCC
Confidence 4566655422 26678988885310 0001111112245788887544321 358999999998 88899999999
Q ss_pred C---Ccccccc
Q 009992 188 N---DWKSLTQ 195 (520)
Q Consensus 188 ~---d~~sl~~ 195 (520)
| ||...+|
T Consensus 140 L~~~DW~~~tQ 150 (464)
T 1jy1_A 140 LIHADWHQKTQ 150 (464)
T ss_dssp BSGGGGTSSBC
T ss_pred CChhHhccccc
Confidence 9 5655443
No 22
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=63.48 E-value=3.9 Score=44.04 Aligned_cols=38 Identities=24% Similarity=0.408 Sum_probs=28.2
Q ss_pred CCceeeEEEEE---------c----C---cEEEecccCCC---ccccc---ccccccEEE
Q 009992 166 SGIVHAKVWIS---------D----C---RDVYIGSANND---WKSLT---QVKEVGIYL 203 (520)
Q Consensus 166 ~~~lH~K~~Vv---------D----~---~~~~iGSaN~d---~~sl~---~~~E~gv~i 203 (520)
+...|.|+++- | . .++|+||+||+ |..+. .|+|+||++
T Consensus 428 ~a~PHiKty~r~~~~~~~~~~~~~~~~~i~W~lltSaNLSkaAWG~~~k~irnyElGVL~ 487 (544)
T 1q32_A 428 TTPAHSKFYMHCATNSAGPCDASQVFKELEWCLYTSANLSQTAWGTVSRKPRNYEAGVLY 487 (544)
T ss_dssp TCCBCCEEEEEEEECC-------CTTSEESEEEEESCCBSHHHHCCSSSCCSSBEEEEEE
T ss_pred CccCceEEEEeeccccccccccCCCccceeEEEEccccCCHHHhhhhhccccceEeEEEe
Confidence 45789999883 3 1 36999999996 44332 489999999
No 23
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=48.12 E-value=18 Score=38.95 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=32.0
Q ss_pred CCeEEEEeccccccCCCceeeEEEEE---cC-cEEEecccCC---Ccccccc
Q 009992 151 KNVENVTLLLGDWWGSGIVHAKVWIS---DC-RDVYIGSANN---DWKSLTQ 195 (520)
Q Consensus 151 ~gv~v~~~~~~~~~~~~~lH~K~~Vv---D~-~~~~iGSaN~---d~~sl~~ 195 (520)
++|++...+.+. -|.+|+|+||. |+ -.++|-|||| ||...+|
T Consensus 166 ~nv~l~~p~mp~---fGthHSKmmlL~y~dg~lRVVI~TANLi~~DW~~~tQ 214 (544)
T 1q32_A 166 KKVKLIEITMPP---FASHHTKLIINFYDNGECKIFLPSNNFTSMETNLPQQ 214 (544)
T ss_dssp TTEEEEEECCCT---TCCBCCCEEEEEESTTEEEEEEESSCBSHHHHHSSBC
T ss_pred CCeEEEeCCCCC---CCCCCceeEEEEecCCCEEEEEeCCCCChHHhccccc
Confidence 688887655433 48999999998 77 7899999999 5655444
No 24
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A
Probab=33.32 E-value=48 Score=34.87 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=28.8
Q ss_pred CCeEEEEeccccccCCCceeeEEEEE---cC-cEEEecccCCC
Q 009992 151 KNVENVTLLLGDWWGSGIVHAKVWIS---DC-RDVYIGSANND 189 (520)
Q Consensus 151 ~gv~v~~~~~~~~~~~~~lH~K~~Vv---D~-~~~~iGSaN~d 189 (520)
++++++...++ .-|.+|+|+||. || -.++|-||||.
T Consensus 89 ~nv~~i~~~mP---~fGthHsKmmlL~y~dg~~RVvI~TANl~ 128 (470)
T 3sq7_A 89 KKVKLIEITMP---PFASHHTKLIINFYDNGECKIFLPSNNFT 128 (470)
T ss_dssp TTEEEEEECCC---TTCCBCCCEEEEEETTSEEEEEEESSCBS
T ss_pred CCceEEecCCC---CcCCccceeEEEEecCCCEEEEEecCCCC
Confidence 68888776654 248999999997 76 67899999994
No 25
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=25.59 E-value=35 Score=35.82 Aligned_cols=29 Identities=28% Similarity=0.304 Sum_probs=23.3
Q ss_pred eeecceeEEe---c-CeEEEccCCCCccccccc
Q 009992 447 RVNHGKYAVS---D-SRAHIGTSNLVWDYFYTT 475 (520)
Q Consensus 447 ~~lHaK~~Vi---D-~~a~IGS~N~d~~sf~~n 475 (520)
+.+|+|+||. | -.++|-|+|+...-+..-
T Consensus 116 GthHsKmmiL~y~~glRVVI~TANL~~~DW~~~ 148 (464)
T 1jy1_A 116 GTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQK 148 (464)
T ss_dssp CCBCCCEEEEEESSCEEEEEECCCBSGGGGTSS
T ss_pred cccchhhheeecCCceEEEEeCCCCChhHhccc
Confidence 6799999976 4 478999999997776553
No 26
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A
Probab=24.11 E-value=34 Score=36.05 Aligned_cols=28 Identities=7% Similarity=-0.129 Sum_probs=22.8
Q ss_pred CeEEEccCCCCccccc------ccCCeeeeecCh
Q 009992 458 SRAHIGTSNLVWDYFY------TTAGVSFGTYNP 485 (520)
Q Consensus 458 ~~a~IGS~N~d~~sf~------~n~e~~l~~~~~ 485 (520)
.|+++||+|++..++- .|+|+|+.+...
T Consensus 380 ~W~LlTSaNLSkaAWG~l~k~irsYElGVL~~p~ 413 (470)
T 3sq7_A 380 EWCLYTSANLSQTAWGTVSRKPRNYEAGVLYHSR 413 (470)
T ss_dssp SEEEEESCCBSHHHHCCSSSCCSSBEEEEEEEGG
T ss_pred eEEEEecccCCHHHhhhhccCCcceeeeEEEccc
Confidence 5899999999976664 499999987654
No 27
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=22.46 E-value=46 Score=32.13 Aligned_cols=66 Identities=14% Similarity=0.162 Sum_probs=41.3
Q ss_pred eEEEEEeccCCCCCCCCCCCCcccHHHHHHHHHHhcccEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCCCCHHHH
Q 009992 35 CKAWLVQSIPTDMPHLPRVPGIVSSGNVLKWLAGNSTKRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQEGFDVY 114 (520)
Q Consensus 35 c~~~lv~s~P~~~~~~~~~~~~~~t~~~~~~lI~~Ak~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~~g~~i~ 114 (520)
=+++||..+..|.. .|+ ..+|+.|++.+.|--+-+ .+||++|+.|++++ -+.+.
T Consensus 23 dRIELc~~L~~GGl----TPS--------~g~i~~~~~~~~ipv~vM------IRPR~GdF~Ys~~E--------~~~M~ 76 (256)
T 1twd_A 23 DRVELCAAPKEGGL----TPS--------LGVLKSVRQRVTIPVHPI------IRPRGGDFCYSDGE--------FAAIL 76 (256)
T ss_dssp SEEEECBCGGGTCB----CCC--------HHHHHHHHHHCCSCEEEB------CCSSSSCSCCCHHH--------HHHHH
T ss_pred CEEEEcCCcccCCC----CCC--------HHHHHHHHHHcCCceEEE------ECCCCCCCcCCHHH--------HHHHH
Confidence 48999999988652 222 234455555555553333 24789999998743 35566
Q ss_pred HHHHHHhhCCCe
Q 009992 115 KSIENAADRNVR 126 (520)
Q Consensus 115 ~aL~~aa~rGV~ 126 (520)
+.+..+.+-|++
T Consensus 77 ~Di~~~~~~Gad 88 (256)
T 1twd_A 77 EDVRTVRELGFP 88 (256)
T ss_dssp HHHHHHHHTTCS
T ss_pred HHHHHHHHcCCC
Confidence 666666666665
No 28
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=20.14 E-value=52 Score=31.07 Aligned_cols=69 Identities=12% Similarity=0.105 Sum_probs=41.0
Q ss_pred CCCeEEEEEeccCCCCCCCCCCCCcccHHHHHHHHHHhcc---cEEEEEEEEeeeccCCCCCCCCCCCCCcccccccCCC
Q 009992 32 RTKCKAWLVQSIPTDMPHLPRVPGIVSSGNVLKWLAGNST---KRLDIIAQYWQLIARPNNSRSGDYGYSEDDMKRFGAQ 108 (520)
Q Consensus 32 ~~~c~~~lv~s~P~~~~~~~~~~~~~~t~~~~~~lI~~Ak---~sI~I~s~Y~~l~~~~~~~~~~d~~~~~~~~~~~~~~ 108 (520)
..-=+++||..+..|.. .|+ ..+|+.|+ +.+.|--+-+ .+||++|+.|++++
T Consensus 20 ~GAdRIELc~~L~~GGl----TPS--------~g~i~~~~~~~~~~~ipV~vM------IRPR~GdF~Ys~~E------- 74 (224)
T 2bdq_A 20 AIISRVELCDNLAVGGT----TPS--------YGVIKEANQYLHEKGISVAVM------IRPRGGNFVYNDLE------- 74 (224)
T ss_dssp TTCCEEEEEBCGGGTCB----CCC--------HHHHHHHHHHHHHTTCEEEEE------CCSSSSCSCCCHHH-------
T ss_pred cCCCEEEEcCCcccCCc----CCC--------HHHHHHHHHhhhhcCCceEEE------ECCCCCCCcCCHHH-------
Confidence 33458999999988642 222 12333343 3334442333 23789999998743
Q ss_pred CCHHHHHHHHHHhhCCCe
Q 009992 109 EGFDVYKSIENAADRNVR 126 (520)
Q Consensus 109 ~g~~i~~aL~~aa~rGV~ 126 (520)
-+.+.+.+..+.+-|++
T Consensus 75 -~~~M~~Di~~~~~~Gad 91 (224)
T 2bdq_A 75 -LRIMEEDILRAVELESD 91 (224)
T ss_dssp -HHHHHHHHHHHHHTTCS
T ss_pred -HHHHHHHHHHHHHcCCC
Confidence 35666667767777765
Done!