BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009993
(520 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 17/215 (7%)
Query: 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA 192
E I LYGHT V + + K + + D+ +R+W +E G + +R V
Sbjct: 190 ECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247
Query: 193 DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYS 252
D + +V+G D + W E + L H + SL D + S
Sbjct: 248 DGRRVVSGAYDFMVKVW-------------DPETETCLHTLQGHTNRVYSLQFDGIHVVS 294
Query: 253 GSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTT-VASTSGSDVYIWDTNSGCLLTV 310
GS D ++RVWD C+ L H G+ D V+ + S V IWD +G L
Sbjct: 295 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQT 354
Query: 311 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 345
+ G + + +F+ T +DG + ++++
Sbjct: 355 LQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 389
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 83/418 (19%), Positives = 158/418 (37%), Gaps = 66/418 (15%)
Query: 58 NLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLP-- 115
R I+ LP L +L+ L+PK+L + LA D+ W+E C+ G+
Sbjct: 13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWRE-KCKEEGIDEP 71
Query: 116 ------------IASAPLGAGF----SDDKSWK--ELID--VLYGHTEAVLTVFVLASAK 155
+P + + D +W+ EL VL GH + V+T +
Sbjct: 72 LHIKRRKVIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNR 131
Query: 156 LLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVL 215
++ S D+ +++W G + + + + ++++G TD + W A
Sbjct: 132 IVSGSD-DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNA---- 186
Query: 216 PHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRH 275
E L+ H + + L R+ SGS D T+RVWD +CL VL
Sbjct: 187 ---------ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMG 237
Query: 276 SDWVYGLAPHDTTVASTSGSD--VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT 333
+D + D V +WD + L + G H SL G + +
Sbjct: 238 HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG-HTNRVYSL--QFDGIHVVS 294
Query: 334 GGEDGAIHMYEI-INDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVR 392
G D +I ++++ +C + T H + + + LVS D + + D++
Sbjct: 295 GSLDTSIRVWDVETGNC-------IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK 347
Query: 393 KLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNF 450
+G+ + ++ P + C + + ++ ++G V++W+
Sbjct: 348 ---------TGQCLQ---TLQGPNKHQSAVTC----LQFNKNFVITSSDDGTVKLWDL 389
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 99/210 (47%), Gaps = 35/210 (16%)
Query: 115 PIASAPLGAGFSDDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG 174
P+ S P+ ++ L L GHT+AV +V + + L +S D ++++W DG
Sbjct: 2 PLGSTPVKPNYA-------LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 54
Query: 175 F--SIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQ 227
S LG + A ++D LLV+ D + W D+S + K
Sbjct: 55 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW----------DVSSGKCLKTLKG 104
Query: 228 NTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPH- 285
++ + + P ++L I SGS+D +VR+WD KCLK L HSD V + +
Sbjct: 105 HSNYVFCCNFNPQSNL------IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 158
Query: 286 DTTVASTSGSD--VYIWDTNSG-CLLTVVN 312
D ++ +S D IWDT SG CL T+++
Sbjct: 159 DGSLIVSSSYDGLCRIWDTASGQCLKTLID 188
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 31/240 (12%)
Query: 240 ITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSD-- 296
+ L D +I SG D T+++WD+ L+C ++L H+ V L +D V T SD
Sbjct: 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ-YDERVIITGSSDST 194
Query: 297 VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL 356
V +WD N+G +L + H R + G + T +D +I ++++ + ++ L
Sbjct: 195 VRVWDVNTGEMLNTL--IHHCEAVLHLRFNNG-MMVTCSKDRSIAVWDM---ASPTDITL 248
Query: 357 VATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLID------VRKL-----------LRSGR 399
+ H VN + F+ ++VSA+GD + + + VR L R
Sbjct: 249 RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL 308
Query: 400 PTSGKRVSRV----IEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE 455
SG + + IE R+L G E + + RIV G +G +++W+ A +
Sbjct: 309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALD 368
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 6/131 (4%)
Query: 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA 192
E + L GH + + +L+ + D+ +R+W +E G + + +R +
Sbjct: 287 EFVRTLNGHKRGI--ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 344
Query: 193 DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYS 252
D K +V+G DG I W V L D L EH G + L D +I S
Sbjct: 345 DNKRIVSGAYDGKIKVWDLVAAL----DPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVS 400
Query: 253 GSWDMTVRVWD 263
S D T+ +WD
Sbjct: 401 SSHDDTILIWD 411
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 100 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 143
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 305
I SGS+D +VR+WD KCLK L HSD V + D ++ +S D IWDT SG
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 203
Query: 306 -CLLTVVN 312
CL T+++
Sbjct: 204 QCLKTLID 211
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 30/206 (14%)
Query: 126 SDDKSWK-------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA 178
SDDK+ K + + L GH+ V + L+ + +D VR+W ++ G +
Sbjct: 106 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 165
Query: 179 SSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLW 234
+ + AV D L+V+ DG W + L L D + F +
Sbjct: 166 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKF 222
Query: 235 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-- 291
G I + + D T+++WD + KCLK H + Y + + +
Sbjct: 223 SPNG---------KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 273
Query: 292 -TSGSD---VYIWDTNSGCLLTVVNG 313
SGS+ VYIW+ + ++ + G
Sbjct: 274 IVSGSEDNLVYIWNLQTKEIVQKLQG 299
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 102 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 145
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 305
I SGS+D +VR+WD KCLK L HSD V + D ++ +S D IWDT SG
Sbjct: 146 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 205
Query: 306 -CLLTVVN 312
CL T+++
Sbjct: 206 QCLKTLID 213
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 30/206 (14%)
Query: 126 SDDKSWK-------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA 178
SDDK+ K + + L GH+ V + L+ + +D VR+W ++ G +
Sbjct: 108 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 167
Query: 179 SSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLW 234
+ + AV D L+V+ DG W + L L D + F +
Sbjct: 168 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKF 224
Query: 235 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-- 291
G I + + D T+++WD + KCLK H + Y + + +
Sbjct: 225 SPNG---------KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 275
Query: 292 -TSGSD---VYIWDTNSGCLLTVVNG 313
SGS+ VYIW+ + ++ + G
Sbjct: 276 IVSGSEDNLVYIWNLQTKEIVQKLQG 301
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 84 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 127
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPH-DTTVASTSGSD--VYIWDTNSG 305
I SGS+D +VR+WD KCLK L HSD V + + D ++ +S D IWDT SG
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 306 -CLLTVVN 312
CL T+++
Sbjct: 188 QCLKTLID 195
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 30/206 (14%)
Query: 126 SDDKSWK-------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA 178
SDDK+ K + + L GH+ V + L+ + +D VR+W ++ G +
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 179 SSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLW 234
+ + AV D L+V+ DG W + L L D + F +
Sbjct: 150 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKF 206
Query: 235 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-- 291
G I + + D T+++WD + KCLK H + Y + + +
Sbjct: 207 SPNG---------KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 257
Query: 292 -TSGSD---VYIWDTNSGCLLTVVNG 313
SGS+ VYIW+ + ++ + G
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQG 283
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 81 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 124
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPH-DTTVASTSGSD--VYIWDTNSG 305
I SGS+D +VR+WD KCLK L HSD V + + D ++ +S D IWDT SG
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 306 -CLLTVVN 312
CL T+++
Sbjct: 185 QCLKTLID 192
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 30/206 (14%)
Query: 126 SDDKSWK-------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA 178
SDDK+ K + + L GH+ V + L+ + +D VR+W ++ G +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 179 SSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLW 234
+ + AV D L+V+ DG W + L L D + F +
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKF 203
Query: 235 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-- 291
G I + + D T+++WD + KCLK H + Y + + +
Sbjct: 204 SPNGKY---------ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 254
Query: 292 -TSGSD---VYIWDTNSGCLLTVVNG 313
SGS+ VYIW+ + ++ + G
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQG 280
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 84 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 127
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPH-DTTVASTSGSD--VYIWDTNSG 305
I SGS+D +VR+WD KCLK L HSD V + + D ++ +S D IWDT SG
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 306 -CLLTVVN 312
CL T+++
Sbjct: 188 QCLKTLID 195
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 30/206 (14%)
Query: 126 SDDKSWK-------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA 178
SDDK+ K + + L GH+ V + L+ + +D VR+W ++ G +
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 179 SSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLW 234
+ + AV D L+V+ DG W + L L D + F +
Sbjct: 150 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKF 206
Query: 235 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-- 291
G I + + D T+++WD + KCLK H + Y + + +
Sbjct: 207 SPNG---------KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 257
Query: 292 -TSGSD---VYIWDTNSGCLLTVVNG 313
SGS+ VYIW+ + ++ + G
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQG 283
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 95 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 138
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 305
I SGS+D +VR+WD KCLK L HSD V + D ++ +S D IWDT SG
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 198
Query: 306 -CLLTVVN 312
CL T+++
Sbjct: 199 QCLKTLID 206
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 30/206 (14%)
Query: 126 SDDKSWK-------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA 178
SDDK+ K + + L GH+ V + L+ + +D VR+W ++ G +
Sbjct: 101 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 160
Query: 179 SSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLW 234
+ + AV D L+V+ DG W + L L D + F +
Sbjct: 161 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKF 217
Query: 235 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-- 291
G I + + D T+++WD + KCLK H + Y + + +
Sbjct: 218 SPNGKY---------ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 268
Query: 292 -TSGSD---VYIWDTNSGCLLTVVNG 313
SGS+ VYIW+ + ++ + G
Sbjct: 269 IVSGSEDNLVYIWNLQTKEIVQKLQG 294
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 83 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 126
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPH-DTTVASTSGSD--VYIWDTNSG 305
I SGS+D +VR+WD KCLK L HSD V + + D ++ +S D IWDT SG
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 186
Query: 306 -CLLTVVN 312
CL T+++
Sbjct: 187 QCLKTLID 194
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 30/206 (14%)
Query: 126 SDDKSWK-------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA 178
SDDK+ K + + L GH+ V + L+ + +D VR+W ++ G +
Sbjct: 89 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 148
Query: 179 SSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLW 234
+ + AV D L+V+ DG W + L L D + F +
Sbjct: 149 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKF 205
Query: 235 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-- 291
G I + + D T+++WD + KCLK H + Y + + +
Sbjct: 206 SPNG---------KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 256
Query: 292 -TSGSD---VYIWDTNSGCLLTVVNG 313
SGS+ VYIW+ + ++ + G
Sbjct: 257 IVSGSEDNLVYIWNLQTKEIVQKLQG 282
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 81 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 124
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 305
I SGS+D +VR+WD KCLK L HSD V + D ++ +S D IWDT SG
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 306 -CLLTVVN 312
CL T+++
Sbjct: 185 QCLKTLID 192
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 97/244 (39%), Gaps = 35/244 (14%)
Query: 126 SDDKSWK-------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA 178
SDDK+ K + + L GH+ V + L+ + +D VR+W ++ G +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 179 SSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLW 234
+ + AV D L+V+ DG W + L L D + F +
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKF 203
Query: 235 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-- 291
G I + + D T+++WD + KCLK H + Y + + +
Sbjct: 204 SPNGKY---------ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 254
Query: 292 -TSGSD---VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG--EDGAIHMYEI 345
SGS+ VYIW+ + ++ + G H S A T + + + D I +Y+
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTIKLYK- 312
Query: 346 INDC 349
+DC
Sbjct: 313 -SDC 315
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 74 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 117
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPH-DTTVASTSGSD--VYIWDTNSG 305
I SGS+D +VR+WD KCLK L HSD V + + D ++ +S D IWDT SG
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 177
Query: 306 -CLLTVVN 312
CL T+++
Sbjct: 178 QCLKTLID 185
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 30/206 (14%)
Query: 126 SDDKSWK-------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA 178
SDDK+ K + + L GH+ V + L+ + +D VR+W ++ G +
Sbjct: 80 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 139
Query: 179 SSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLW 234
+ + AV D L+V+ DG W + L L D + F +
Sbjct: 140 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKF 196
Query: 235 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-- 291
G I + + D T+++WD + KCLK H + Y + + +
Sbjct: 197 SPNG---------KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 247
Query: 292 -TSGSD---VYIWDTNSGCLLTVVNG 313
SGS+ VYIW+ + ++ + G
Sbjct: 248 IVSGSEDNLVYIWNLQTKEIVQKLQG 273
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 84 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 127
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPH-DTTVASTSGSD--VYIWDTNSG 305
I SGS+D +VR+WD KCLK L HSD V + + D ++ +S D IWDT SG
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 306 -CLLTVVN 312
CL T+++
Sbjct: 188 QCLKTLID 195
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 30/206 (14%)
Query: 126 SDDKSWK-------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA 178
SDDK+ K + + L GH+ V + L+ + +D VR+W ++ G +
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 179 SSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLW 234
+ + AV D L+V+ DG W + L L D + F +
Sbjct: 150 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKF 206
Query: 235 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-- 291
G I + + D T+++WD + KCLK H + Y + + +
Sbjct: 207 SPNG---------KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 257
Query: 292 -TSGSD---VYIWDTNSGCLLTVVNG 313
SGS+ VYIW+ + ++ + G
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQG 283
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 78 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 121
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 305
I SGS+D +VR+WD KCLK L HSD V + D ++ +S D IWDT SG
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 306 -CLLTVVN 312
CL T+++
Sbjct: 182 QCLKTLID 189
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 30/206 (14%)
Query: 126 SDDKSWK-------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA 178
SDDK+ K + + L GH+ V + L+ + +D VR+W ++ G +
Sbjct: 84 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 143
Query: 179 SSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLW 234
+ + AV D L+V+ DG W + L L D + F +
Sbjct: 144 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKF 200
Query: 235 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-- 291
G I + + D T+++WD + KCLK H + Y + + +
Sbjct: 201 SPNG---------KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 251
Query: 292 -TSGSD---VYIWDTNSGCLLTVVNG 313
SGS+ VYIW+ + ++ + G
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQG 277
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 78 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 121
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 305
I SGS+D +VR+WD KCLK L HSD V + D ++ +S D IWDT SG
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 306 -CLLTVVN 312
CL T+++
Sbjct: 182 QCLKTLID 189
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 30/206 (14%)
Query: 126 SDDKSWK-------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA 178
SDDK+ K + + L GH+ V + L+ + +D VR+W ++ G +
Sbjct: 84 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 143
Query: 179 SSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLW 234
+ + AV D L+V+ DG W + L L D + F +
Sbjct: 144 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKF 200
Query: 235 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-- 291
G I + + D T+++WD + KCLK H + Y + + +
Sbjct: 201 SPNG---------KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 251
Query: 292 -TSGSD---VYIWDTNSGCLLTVVNG 313
SGS+ VYIW+ + ++ + G
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQG 277
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
L GHT+AV +V + + L +S D ++++W DG S LG + A ++D
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 79 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 122
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 305
I SGS+D +VR+WD KCLK L HSD V + D ++ +S D IWDT SG
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 182
Query: 306 -CLLTVVN 312
CL T+++
Sbjct: 183 QCLKTLID 190
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 30/206 (14%)
Query: 126 SDDKSWK-------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA 178
SDDK+ K + + L GH+ V + L+ + +D VR+W ++ G +
Sbjct: 85 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 144
Query: 179 SSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLW 234
+ + AV D L+V+ DG W + L L D + F +
Sbjct: 145 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKF 201
Query: 235 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-- 291
G I + + D T+++WD + KCLK H + Y + + +
Sbjct: 202 SPNG---------KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 252
Query: 292 -TSGSD---VYIWDTNSGCLLTVVNG 313
SGS+ VYIW+ + ++ + G
Sbjct: 253 IVSGSEDNLVYIWNLQTKEIVQKLQG 278
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 194
L GHT+AV +V + + L S D ++++W DG S LG + A ++D
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 249
LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 81 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 124
Query: 250 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPH-DTTVASTSGSD--VYIWDTNSG 305
I SGS+D +VR+WD KCLK L HSD V + + D ++ +S D IWDT SG
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 306 -CLLTVVN 312
CL T+++
Sbjct: 185 QCLKTLID 192
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 30/206 (14%)
Query: 126 SDDKSWK-------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA 178
SDDK+ K + + L GH+ V + L+ + +D VR+W ++ G +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 179 SSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLW 234
+ + AV D L+V+ DG W + L L D + F +
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKF 203
Query: 235 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-- 291
G I + + D T+++WD + KCLK H + Y + + +
Sbjct: 204 SPNGKY---------ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 254
Query: 292 -TSGSD---VYIWDTNSGCLLTVVNG 313
SGS+ VYIW+ + ++ + G
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQG 280
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 28/191 (14%)
Query: 134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVA 191
L+ L GHT+AV +V + + L +S D ++++W DG S LG + A +
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 192 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALD 246
+D LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 78 SDSNLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL--- 124
Query: 247 LTRIYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPH-DTTVASTSGSD--VYIWDT 302
I SGS+D +VR+WD CLK L HSD V + + D ++ +S D IWDT
Sbjct: 125 ---IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 303 NSG-CLLTVVN 312
SG CL T+++
Sbjct: 182 ASGQCLKTLID 192
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 30/206 (14%)
Query: 126 SDDKSWK-------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA 178
SDDK+ K + + L GH+ V + L+ + +D VR+W ++ G +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLK 146
Query: 179 SSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLW 234
+ + AV D L+V+ DG W + L L D + F +
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKF 203
Query: 235 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-- 291
G I + + D T+++WD + KCLK H + Y + + +
Sbjct: 204 SPNGK---------YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 254
Query: 292 -TSGSD---VYIWDTNSGCLLTVVNG 313
SGS+ VYIW+ + ++ + G
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQG 280
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 28/191 (14%)
Query: 134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVA 191
L+ L GHT+AV +V + + L +S D ++++W DG S LG + A +
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 192 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALD 246
+D LLV+ D + W D+S + K ++ + + P ++L
Sbjct: 78 SDSNLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL--- 124
Query: 247 LTRIYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPH-DTTVASTSGSD--VYIWDT 302
I SGS+D +VR+WD CLK L HSD V + + D ++ +S D IWDT
Sbjct: 125 ---IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 303 NSG-CLLTVVN 312
SG CL T+++
Sbjct: 182 ASGQCLKTLID 192
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 81/206 (39%), Gaps = 30/206 (14%)
Query: 126 SDDKSWK-------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA 178
SDDK+ K + + L GH+ V + L+ + +D VR+W ++ G +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLK 146
Query: 179 SSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLW 234
+ + AV D L+V+ DG W + L L D + F +
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKF 203
Query: 235 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-- 291
G I + + D +++WD + KCLK H + Y + + +
Sbjct: 204 SPNG---------KYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 254
Query: 292 -TSGSD---VYIWDTNSGCLLTVVNG 313
SGS+ VYIW+ + ++ + G
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQG 280
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 119/272 (43%), Gaps = 38/272 (13%)
Query: 116 IASAPLG---AGFSDDKSWK------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIV 166
+A +P G A SDDK+ K +L+ L GH+ +V V + + ++ D V
Sbjct: 22 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 81
Query: 167 RMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCW-RAVEVLPHLFDISG 223
++W+ +G + + ++R VA D + + + D + W R ++L L S
Sbjct: 82 KLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 140
Query: 224 SEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDR--ALLKCLKVLRHSDWVYG 281
S +W + + D I S S D TV++W+R LL+ L S W
Sbjct: 141 S--------VWG-----VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA 187
Query: 282 LAPHDTTVASTSGSD-VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI 340
+P T+AS S V +W+ N G LL + G H + + +A S G + + +D +
Sbjct: 188 FSPDGQTIASASDDKTVKLWNRN-GQLLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTV 245
Query: 341 HMYEIINDCTEANVLLVATWIPHTGPVNSLAF 372
++ N L+ T H+ VN +AF
Sbjct: 246 KLW-------NRNGQLLQTLTGHSSSVNGVAF 270
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 116/276 (42%), Gaps = 47/276 (17%)
Query: 113 GLPIASAPLGAGFSDDKSWK------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIV 166
G IASA SDDK+ K +L+ L GH+ +V V + + ++ D V
Sbjct: 274 GQTIASA------SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 327
Query: 167 RMW-----HLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCW-RAVEVLPHLFD 220
++W HL+ + SS G A + D + + + D + W R ++L L
Sbjct: 328 KLWNRNGQHLQT-LTGHSSSVWGV---AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 383
Query: 221 ISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDR--ALLKCLKVLRHSDW 278
S S + + + D I S S D TV++W+R LL+ L S W
Sbjct: 384 HSSSVRG-------------VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 430
Query: 279 VYGLAPHDTTVASTSGSD-VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED 337
+P D T+AS S V +W+ N G LL + G H + + +A S G + + +D
Sbjct: 431 GVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTG-HSSSVRGVAFSPDGQTIASASDD 488
Query: 338 GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE 373
+ ++ N L+ T H+ V +AF
Sbjct: 489 KTVKLW-------NRNGQLLQTLTGHSSSVRGVAFS 517
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 127/305 (41%), Gaps = 55/305 (18%)
Query: 112 WGLPIASAPLG---AGFSDDKSWK------ELIDVLYGHTEAVLTVFVLASAKLLFTSGY 162
WG +A +P G A SDDK+ K +L+ L GH+ +V V + + ++
Sbjct: 143 WG--VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 200
Query: 163 DSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCW-RAVEVLP--- 216
D V++W+ +G + + ++R VA D + + + D + W R ++L
Sbjct: 201 DKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 259
Query: 217 -HLFDISG-----------SEKQNTQFRLWEHEGPI-------------TSLALDLTRIY 251
H ++G S + +LW G + + + D I
Sbjct: 260 GHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIA 319
Query: 252 SGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTSGSD-VYIWDTNSGCLL 308
S S D TV++W+R + HS V+G+A P T+AS S V +W+ N G LL
Sbjct: 320 SASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLL 378
Query: 309 TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN 368
+ G H + + +A S G + + +D + ++ N L+ T H+ V
Sbjct: 379 QTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLW-------NRNGQLLQTLTGHSSSVW 430
Query: 369 SLAFE 373
+AF
Sbjct: 431 GVAFS 435
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 22/102 (21%)
Query: 116 IASAPLG---AGFSDDKSWK------ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIV 166
+A +P G A SDDK+ K +L+ L GH+ +V V + + ++ D V
Sbjct: 473 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 532
Query: 167 RMW------------HLEDGFSIASSKPLGCTIRAVAADKKL 196
++W H + +A S P G TI + ++DK +
Sbjct: 533 KLWNRNGQLLQTLTGHSSSVWGVAFS-PDGQTIASASSDKTV 573
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 96/237 (40%), Gaps = 36/237 (15%)
Query: 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV-- 190
E I ++GH V +V ++ + + ++ D ++MW ++ G+ + + +R V
Sbjct: 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 242
Query: 191 AADKKLLVAGGTDGFIHCW---------------RAVEVL---PHLFDISGSEKQNTQFR 232
D L+ + D + W VE + P S SE ++ +
Sbjct: 243 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 302
Query: 233 LWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPHDTTVAS 291
GP + SGS D T+++WD + CL L H +WV G+ H
Sbjct: 303 KSGKPGPF---------LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFI 353
Query: 292 TSGSD---VYIWD-TNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE 344
S +D + +WD N C+ T+ AH SL T ++ TG D + ++E
Sbjct: 354 LSCADDKTLRVWDYKNKRCMKTL--NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/284 (21%), Positives = 113/284 (39%), Gaps = 48/284 (16%)
Query: 138 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADK--K 195
L GH V V ++ ++ D+ +++W E G + K +++ ++ D K
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG 253
LL + D I W D G E T + H+ ++S+++ + I S
Sbjct: 164 LLASCSADMTIKLW----------DFQGFECIRT---MHGHDHNVSSVSIMPNGDHIVSA 210
Query: 254 SWDMTVRVWDRALLKCLKVLR-HSDWVYGLAP-HDTTVASTSGSD--VYIWDTNSG-CLL 308
S D T+++W+ C+K H +WV + P D T+ ++ +D V +W + C
Sbjct: 211 SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 270
Query: 309 TVVNGAHVGNTKSLARSHT------------------GDFLFTGGEDGAIHMYEIINDCT 350
+ HV S A + G FL +G D I M+++
Sbjct: 271 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV----- 325
Query: 351 EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR 392
+ + + T + H V + F +++S A D L + D +
Sbjct: 326 -STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 110/285 (38%), Gaps = 48/285 (16%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADK 194
L GHT++V + S KLL + D +++W + I + + +V+ +
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 204
Query: 195 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS 254
+V+ D I W K T R W + D T I S S
Sbjct: 205 DHIVSASRDKTIKMWEV--------QTGYCVKTFTGHREWVR---MVRPNQDGTLIASCS 253
Query: 255 WDMTVRVWDRALLKC---LKVLRHSDWVYGLAPHD--TTVASTSGSD------------- 296
D TVRVW A +C L+ RH AP ++++ +GS+
Sbjct: 254 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 313
Query: 297 ------VYIWDTNSG-CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC 349
+ +WD ++G CL+T+V H + + G F+ + +D + +++
Sbjct: 314 GSRDKTIKMWDVSTGMCLMTLV--GHDNWVRGVLFHSGGKFILSCADDKTLRVWDY---- 367
Query: 350 TEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVR 392
N + T H V SL F P++V+ + D + + + R
Sbjct: 368 --KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 28/230 (12%)
Query: 132 KELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV- 190
K+ + L GH V + A +L + D VR+W ++ G + T+R +
Sbjct: 152 KKFLLQLSGHDGGVWAL-KYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 210
Query: 191 ---AADKKLLVAGGTDGFIHCWRAVEV-----------LPHLFDISGSEKQNTQFR--LW 234
+ K +V G D +H W+ + P +F + ++N F L
Sbjct: 211 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH---TPEENPYFVGVLR 267
Query: 235 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYG-LAPHDTT--VA 290
H + +++ + SGS+D T+ VWD A +KCL +L H+D +Y + H+ ++
Sbjct: 268 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS 327
Query: 291 STSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI 340
++ + + IWD +G L+ + G H L S FL + DG+I
Sbjct: 328 ASMDTTIRIWDLENGELMYTLQG-HTALVGLLRLS--DKFLVSAAADGSI 374
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKL 196
+L GHT+ + + K ++ D+ +R+W LE+G + + + + + K
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF 364
Query: 197 LVAGGTDGFIHCWRA 211
LV+ DG I W A
Sbjct: 365 LVSAAADGSIRGWDA 379
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 99/230 (43%), Gaps = 28/230 (12%)
Query: 132 KELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV- 190
K+ + L GH V + A +L + D VR+W ++ G + T+R +
Sbjct: 152 KKFLLQLSGHDGGVWAL-KYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 210
Query: 191 ---AADKKLLVAGGTDGFIHCWRAVEV-----------LPHLFDISGSEKQNTQFR--LW 234
+ K +V G D +H W+ + P +F + ++N F L
Sbjct: 211 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH---TPEENPYFVGVLR 267
Query: 235 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYG-LAPHDTT--VA 290
H + +++ + SGS+D T+ VWD A KCL +L H+D +Y + H+ ++
Sbjct: 268 GHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCIS 327
Query: 291 STSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI 340
++ + + IWD +G L + G H L S FL + DG+I
Sbjct: 328 ASXDTTIRIWDLENGELXYTLQG-HTALVGLLRLS--DKFLVSAAADGSI 374
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 34/75 (45%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKL 196
+L GHT+ + + K ++ D+ +R+W LE+G + + + + K
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKF 364
Query: 197 LVAGGTDGFIHCWRA 211
LV+ DG I W A
Sbjct: 365 LVSAAADGSIRGWDA 379
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 18/180 (10%)
Query: 138 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR----AVAAD 193
L GH+ V V + + ++ +D +R+W+L++G K LG T A + D
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNG--QCQYKFLGHTKDVLSVAFSPD 120
Query: 194 KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSG 253
+ +V+GG D + W H + R S +LD I SG
Sbjct: 121 NRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRF--------SPSLDAPVIVSG 172
Query: 254 SWDMTVRVWDRALLKCLKVLR-HSDWVYG--LAPHDTTVASTSGSDVY-IWDTNSGCLLT 309
WD V+VWD A + + L+ H+++V ++P + AS+ V +WD G L+
Sbjct: 173 GWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALS 232
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 134 LIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--A 191
L+ L GHT V +V V L +S D + R+W L G ++ S G I + +
Sbjct: 188 LVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEAL-SEMAAGAPINQICFS 246
Query: 192 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGP------ITSLA 244
++ + A G +FD+ E ++ L EH+G S+A
Sbjct: 247 PNRYWMCAATEKGI-----------RIFDL---ENKDIIVELAPEHQGSKKIVPECVSIA 292
Query: 245 --LDLTRIYSGSWDMTVRVW 262
D + +YSG D +RVW
Sbjct: 293 WSADGSTLYSGYTDNVIRVW 312
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 101/250 (40%), Gaps = 51/250 (20%)
Query: 236 HEGPITSLAL-----DLTRIYSGSWDMTVRVW----DRALLKC------LKVLRHSDWVY 280
H G +TSLA T++ S S D T+ W DR +C ++ HS +V
Sbjct: 12 HRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVS 71
Query: 281 GLAPHDTTVASTSGS---DVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHTGDFLFTGGE 336
+A + + S S + +W+ +G C + H + S+A S + +GG
Sbjct: 72 DVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFL--GHTKDVLSVAFSPDNRQIVSGGR 129
Query: 337 DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF----EFPWLVSAAGDGKLSLIDVR 392
D A+ ++ + +C + + HT V+ + F + P +VS D + + D
Sbjct: 130 DNALRVWNVKGEC-----MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD-- 182
Query: 393 KLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGG--EEGIVRIWNF 450
L +GR + L G + SV + D +C ++G+ R+W+
Sbjct: 183 --LATGRLVTD---------------LKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225
Query: 451 SQAFEIERRA 460
++ + A
Sbjct: 226 TKGEALSEMA 235
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/343 (20%), Positives = 136/343 (39%), Gaps = 47/343 (13%)
Query: 134 LIDVLYGHTEAVLTVFV-LASAKLLFTSGYDSIVRMWHL---EDGFSIASSKPLG----C 185
L + HT+ V + + +A ++ ++ D + +W L + + +A + G
Sbjct: 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFV 433
Query: 186 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA- 244
+++D + ++G DG + W D++ R H + S+A
Sbjct: 434 EDVVLSSDGQFALSGSWDGELRLW----------DLAAGVSTR---RFVGHTKDVLSVAF 480
Query: 245 -LDLTRIYSGSWDMTVRVWDRALLKCLKVLR-----HSDWV--YGLAPHD---TTVASTS 293
LD +I S S D T+++W+ L +C + H DWV +P+ T V+++
Sbjct: 481 SLDNRQIVSASRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW 539
Query: 294 GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN 353
V +W+ S C L H G ++A S G +GG+DG + ++ D E
Sbjct: 540 DKTVKVWNL-SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW----DLAEGK 594
Query: 354 VLLVATWIPHTGPVNSLAFEFP---WLVSAAGDG-KLSLIDVRKLLRSGRPTSGKRVSRV 409
L + +++L F P WL +A G K+ ++ + ++ + +
Sbjct: 595 KLYS---LEANSVIHALCFS-PNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKA 650
Query: 410 IEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQ 452
P C L+ + G +G++R+W +
Sbjct: 651 DNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS 179
+L L GHT V TV V L + G D +V +W L +G + S
Sbjct: 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS 598
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 78/189 (41%), Gaps = 27/189 (14%)
Query: 173 DGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQ 230
+ + +SS IR+V + D K L G D I W DI E +
Sbjct: 112 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW----------DI---ENRKIV 158
Query: 231 FRLWEHEGPITSLALDLT--RIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHD 286
L HE I SL + ++ SGS D TVR+WD +C L D V +A P D
Sbjct: 159 MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218
Query: 287 TTVASTSGSD--VYIWDTNSGCLLTVVNG------AHVGNTKSLARSHTGDFLFTGGEDG 338
+ D V +WD+ +G L+ ++ H + S+ + G + +G D
Sbjct: 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 278
Query: 339 AIHMYEIIN 347
++ ++ + N
Sbjct: 279 SVKLWNLQN 287
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 26/202 (12%)
Query: 132 KELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-FSIASSKPLGCTIRAV 190
++++ +L GH + + ++ S L + D VR+W L G S+ S G T AV
Sbjct: 155 RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV 214
Query: 191 A-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DL 247
+ D K + AG D + W + L + SE ++ H+ + S+ D
Sbjct: 215 SPGDGKYIAAGSLDRAVRVWDSETGF--LVERLDSENESGT----GHKDSVYSVVFTRDG 268
Query: 248 TRIYSGSWDMTVRVW------DRALLKC-------LKVLRHSDWVYGLAPHDTTVASTSG 294
+ SGS D +V++W +++ K + + H D+V +A SG
Sbjct: 269 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 328
Query: 295 SD---VYIWDTNSGCLLTVVNG 313
S V WD SG L ++ G
Sbjct: 329 SKDRGVLFWDKKSGNPLLMLQG 350
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 49/179 (27%)
Query: 284 PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY 343
P + +S+ SD+YI +S+ S G FL TG ED I ++
Sbjct: 111 PENLNTSSSPSSDLYI--------------------RSVCFSPDGKFLATGAEDRLIRIW 150
Query: 344 EIINDCTEANVLLVATWIPHTGPVNSLAFEFPW---LVSAAGDGKLSLIDVRKLLRSGRP 400
+I N +V H + SL + FP LVS +GD + + D LR+G+
Sbjct: 151 DI------ENRKIVMILQGHEQDIYSLDY-FPSGDKLVSGSGDRTVRIWD----LRTGQ- 198
Query: 401 TSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGE-EGIVRIWNFSQAFEIER 458
S + +E ++V G + + G + VR+W+ F +ER
Sbjct: 199 -----CSLTLSIED--------GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 244
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 26/160 (16%)
Query: 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED---GFSIASSKPLGCTIRA 189
+L L GH + V V + +K+ S D VR+W +D G + + + ++
Sbjct: 9 QLSATLKGHDQDVRDVVAVDDSKVASVS-RDGTVRLWSKDDQWLGTVVYTGQGFLNSV-C 66
Query: 190 VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTR 249
++K+LL+ GG D I+ +P LF SG ++ + L H+G + SL+
Sbjct: 67 YDSEKELLLFGGKDTXING------VP-LFATSG---EDPLYTLIGHQGNVCSLSFQDGV 116
Query: 250 IYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTV 289
+ SGSWD T +VW L VY L H+ +V
Sbjct: 117 VISGSWDKTAKVWKEGSL-----------VYNLQAHNASV 145
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 100/261 (38%), Gaps = 58/261 (22%)
Query: 215 LPHLFDISGSEKQNTQ---FRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDR--ALLKC 269
L H F +S S + T W H+G I +G + +R+W++ ALL
Sbjct: 94 LRHPFALSASSGKTTNQVTCLAWSHDG---------NSIVTGVENGELRLWNKTGALLNV 144
Query: 270 LKVLRHSDWVYGLAPHDTTVASTSGSDVYI-WDTNSGCLLTVVNGAHVGNTKSLARSHTG 328
L R T + S +V I W+ SG ++ G + A +H+G
Sbjct: 145 LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSG 204
Query: 329 D--------------FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE- 373
D F+ G + GAI +Y+I + I H GP++ L F
Sbjct: 205 DGSLGVDVEWVDDDKFVIPGPK-GAIFVYQITEKTPTGKL------IGHHGPISVLEFND 257
Query: 374 -FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD-I 431
L+SA+ DG L ++ G S Q +G +++S +
Sbjct: 258 TNKLLLSASDDGTL------RIWHGGNGNS-------------QNCFYGHSQSIVSASWV 298
Query: 432 GADRIVCGGEEGIVRIWNFSQ 452
G D+++ +G VR+W+ Q
Sbjct: 299 GDDKVISCSMDGSVRLWSLKQ 319
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 20/190 (10%)
Query: 138 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR----AVAAD 193
L GH+ V V + + + + +D +R+W L G + + +G T A ++D
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG--TTTRRFVGHTKDVLSVAFSSD 139
Query: 194 KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSG 253
+ +V+G D I W + V + + + R P +S + I S
Sbjct: 140 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF----SPNSSNPI----IVSC 191
Query: 254 SWDMTVRVWDRALLKCLKV--LRHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSGCLL 308
WD V+VW+ A K LK + H+ ++ + D ++ ++ G D +WD N G L
Sbjct: 192 GWDKLVKVWNLANCK-LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 250
Query: 309 TVVNGAHVGN 318
++G + N
Sbjct: 251 YTLDGGDIIN 260
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 14/150 (9%)
Query: 252 SGSWDMTVRVWDRAL-LKCLKVLRHSDWVYGLAPHDTTVASTSGS---DVYIWDTNSGCL 307
SGSWD T+R+WD + + H+ V +A SGS + +W+T C
Sbjct: 103 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 162
Query: 308 LTVVNGAHVG--NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 365
TV + +H + + + + + + G D + ++ + AN L I HTG
Sbjct: 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL------ANCKLKTNHIGHTG 216
Query: 366 PVNSLAFEFPWLVSAAG--DGKLSLIDVRK 393
+N++ + A+G DG+ L D+ +
Sbjct: 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 20/190 (10%)
Query: 138 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR----AVAAD 193
L GH+ V V + + + + +D +R+W L G + + +G T A ++D
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG--TTTRRFVGHTKDVLSVAFSSD 116
Query: 194 KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSG 253
+ +V+G D I W + V + + + R P +S + I S
Sbjct: 117 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF----SPNSSNPI----IVSC 168
Query: 254 SWDMTVRVWDRALLKCLKV--LRHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSGCLL 308
WD V+VW+ A K LK + H+ ++ + D ++ ++ G D +WD N G L
Sbjct: 169 GWDKLVKVWNLANCK-LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 227
Query: 309 TVVNGAHVGN 318
++G + N
Sbjct: 228 YTLDGGDIIN 237
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 14/150 (9%)
Query: 252 SGSWDMTVRVWDRAL-LKCLKVLRHSDWVYGLAPHDTTVASTSGS---DVYIWDTNSGCL 307
SGSWD T+R+WD + + H+ V +A SGS + +W+T C
Sbjct: 80 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 139
Query: 308 LTVVNGAHVG--NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 365
TV + +H + + + + + + G D + ++ + AN L I HTG
Sbjct: 140 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL------ANCKLKTNHIGHTG 193
Query: 366 PVNSLAFEFPWLVSAAG--DGKLSLIDVRK 393
+N++ + A+G DG+ L D+ +
Sbjct: 194 YLNTVTVSPDGSLCASGGKDGQAMLWDLNE 223
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 21/176 (11%)
Query: 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-FSIASSKPLGCTIRAVAADKKLLV 198
GH +AV + A K L +S DS++++W+ + G + + + D +LL
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLL- 1059
Query: 199 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD 256
+ DG + W I+G +++ H+G + S A+ D T+ S S D
Sbjct: 1060 SWSFDGTVKVWNV---------ITGRIERDFTC----HQGTVLSCAISSDATKFSSTSAD 1106
Query: 257 MTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSD---VYIWDTNSGCLL 308
T ++W LL L L+ H+ V A + +G D + IW+ + G LL
Sbjct: 1107 KTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/333 (21%), Positives = 117/333 (35%), Gaps = 107/333 (32%)
Query: 193 DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF-----RLWEHEGPITSLALDL 247
D +L++G D + W+ E E+QN F L H ++ LAL
Sbjct: 38 DSPVLISGSRDKTVMIWKLYE-----------EEQNGYFGIPHKALTGHNHFVSDLALSQ 86
Query: 248 TRIY--SGSWDMTVRVWD--------------------------RALL--------KCLK 271
+ S SWD T+R+WD R +L K
Sbjct: 87 ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
Query: 272 VL-----------RHSDWV---------------YGLAPHDTTVASTSGSD--VYIWDTN 303
+L HSDWV AP+ +V G D + +W+TN
Sbjct: 147 ILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV----GWDGRLKVWNTN 202
Query: 304 SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH 363
T AH N L+ S G ++ TGG+D + +++I+N +
Sbjct: 203 FQIRYTF--KAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGS---- 256
Query: 364 TGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML-- 419
+N +AF + W+ G + + L+ T K IE EP +
Sbjct: 257 --TINQIAFNPKLQWVAVGTDQG----VKIFNLM-----TQSKAPVCTIEAEPITKAEGQ 305
Query: 420 --HGFECNLLSVDIGADRIVCGGEEGIVRIWNF 450
+C L+ + ++ G +G++R ++F
Sbjct: 306 KGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSF 338
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 21/176 (11%)
Query: 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-FSIASSKPLGCTIRAVAADKKLLV 198
GH +AV + A K L +S DS++++W+ + G + + + D +LL
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLL- 1066
Query: 199 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD 256
+ DG + W I+G +++ H+G + S A+ D T+ S S D
Sbjct: 1067 SWSFDGTVKVWNV---------ITGRIERDFTC----HQGTVLSCAISSDATKFSSTSAD 1113
Query: 257 MTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSD---VYIWDTNSGCLL 308
T ++W LL L L+ H+ V A + +G D + IW+ + G LL
Sbjct: 1114 KTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1169
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 103/267 (38%), Gaps = 47/267 (17%)
Query: 127 DDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT 186
DD+ + + GH+ V + A ++ +D +R+W + G +
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD 109
Query: 187 IRAVAADKK--LLVAGGTDGFIHCW-----------------RAVEVLPH--------LF 219
+ +V DKK ++++G D I W V V+P+
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 220 DISGSEKQNTQFRLWE---------HEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK 268
+G++K + L + H I +L D T I S D + +W+ A K
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Query: 269 CLKVLRHSDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTK------ 320
+ L D V+ LA P+ +A+ + + + ++ + L+ + G +K
Sbjct: 230 AMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 289
Query: 321 -SLARSHTGDFLFTGGEDGAIHMYEII 346
SLA S G LF G D I +++++
Sbjct: 290 VSLAWSADGQTLFAGYTDNVIRVWQVM 316
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 79/214 (36%), Gaps = 64/214 (29%)
Query: 242 SLALDLTRIYSGSWDMTVRVWDRAL-------------------------------LKCL 270
+L D S SWD T+R+WD A K +
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 271 KV-----------LRHSDWVYGL-------APHDTTVASTSGSD--VYIWDTNSGCLLTV 310
KV L H+DWV + A D+ ++G+D V W+ N +
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 311 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL 370
G H N +L S G + + G+DG I ++ + +A L A V SL
Sbjct: 192 FIG-HNSNINTLTASPDGTLIASAGKDGEIMLWNLA--AKKAMYTLSA-----QDEVFSL 243
Query: 371 AFEFP---WLVSAAGDG-KLSLIDVRKLLRSGRP 400
AF P WL +A G K+ +D + L+ RP
Sbjct: 244 AFS-PNRYWLAAATATGIKVFSLDPQYLVDDLRP 276
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 103/267 (38%), Gaps = 47/267 (17%)
Query: 127 DDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT 186
DD+ + + GH+ V + A ++ +D +R+W + G +
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD 109
Query: 187 IRAVAADKK--LLVAGGTDGFIHCW-----------------RAVEVLPH--------LF 219
+ +V DKK ++++G D I W V V+P+
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 220 DISGSEKQNTQFRLWE---------HEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK 268
+G++K + L + H I +L D T I S D + +W+ A K
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Query: 269 CLKVLRHSDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTK------ 320
+ L D V+ LA P+ +A+ + + + ++ + L+ + G +K
Sbjct: 230 AMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 289
Query: 321 -SLARSHTGDFLFTGGEDGAIHMYEII 346
SLA S G LF G D I +++++
Sbjct: 290 VSLAWSADGQTLFAGYTDNVIRVWQVM 316
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 79/214 (36%), Gaps = 64/214 (29%)
Query: 242 SLALDLTRIYSGSWDMTVRVWDRAL-------------------------------LKCL 270
+L D S SWD T+R+WD A K +
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 271 KV-----------LRHSDWVYGL-------APHDTTVASTSGSD--VYIWDTNSGCLLTV 310
KV L H+DWV + A D+ ++G+D V W+ N +
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 311 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL 370
G H N +L S G + + G+DG I ++ + +A L A V SL
Sbjct: 192 FIG-HNSNINTLTASPDGTLIASAGKDGEIMLWNLA--AKKAMYTLSA-----QDEVFSL 243
Query: 371 AFEFP---WLVSAAGDG-KLSLIDVRKLLRSGRP 400
AF P WL +A G K+ +D + L+ RP
Sbjct: 244 AFS-PNRYWLAAATATGIKVFSLDPQYLVDDLRP 276
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 103/267 (38%), Gaps = 47/267 (17%)
Query: 127 DDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT 186
DD+ + + GH+ V + A ++ +D +R+W + G +
Sbjct: 44 DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD 103
Query: 187 IRAVAADKK--LLVAGGTDGFIHCW-----------------RAVEVLPH--------LF 219
+ +V DKK ++++G D I W V V+P+
Sbjct: 104 VMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 163
Query: 220 DISGSEKQNTQFRLWE---------HEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK 268
+G++K + L + H I +L D T I S D + +W+ A K
Sbjct: 164 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 223
Query: 269 CLKVLRHSDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTK------ 320
+ L D V+ LA P+ +A+ + + + ++ + L+ + G +K
Sbjct: 224 AMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 283
Query: 321 -SLARSHTGDFLFTGGEDGAIHMYEII 346
SLA S G LF G D I +++++
Sbjct: 284 VSLAWSADGQTLFAGYTDNVIRVWQVM 310
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 79/214 (36%), Gaps = 64/214 (29%)
Query: 242 SLALDLTRIYSGSWDMTVRVWDRAL-------------------------------LKCL 270
+L D S SWD T+R+WD A K +
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 125
Query: 271 KV-----------LRHSDWVYGL-------APHDTTVASTSGSD--VYIWDTNSGCLLTV 310
KV L H+DWV + A D+ ++G+D V W+ N +
Sbjct: 126 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 185
Query: 311 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL 370
G H N +L S G + + G+DG I ++ + +A L A V SL
Sbjct: 186 FIG-HNSNINTLTASPDGTLIASAGKDGEIMLWNLA--AKKAMYTLSA-----QDEVFSL 237
Query: 371 AFEFP---WLVSAAGDG-KLSLIDVRKLLRSGRP 400
AF P WL +A G K+ +D + L+ RP
Sbjct: 238 AFS-PNRYWLAAATATGIKVFSLDPQYLVDDLRP 270
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 101/265 (38%), Gaps = 47/265 (17%)
Query: 127 DDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT 186
DD+ + + GH+ V + A ++ +D +R+W + G +
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD 109
Query: 187 IRAVAADKK--LLVAGGTDGFIHCW-----------------RAVEVLPH--------LF 219
+ +V DKK ++++G D I W V V+P+
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 220 DISGSEKQNTQFRLWE---------HEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK 268
+G++K + L + H I +L D T I S D + +W+ A K
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Query: 269 CLKVLRHSDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTK------ 320
+ L D V+ LA P+ +A+ + + + ++ + L+ + G +K
Sbjct: 230 AMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 289
Query: 321 -SLARSHTGDFLFTGGEDGAIHMYE 344
SLA S G LF G D I +++
Sbjct: 290 VSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 79/214 (36%), Gaps = 64/214 (29%)
Query: 242 SLALDLTRIYSGSWDMTVRVWDRAL-------------------------------LKCL 270
+L D S SWD T+R+WD A K +
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 271 KV-----------LRHSDWVYGL-------APHDTTVASTSGSD--VYIWDTNSGCLLTV 310
KV L H+DWV + A D+ ++G+D V W+ N +
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 311 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL 370
G H N +L S G + + G+DG I ++ + +A L A V SL
Sbjct: 192 FIG-HNSNINTLTASPDGTLIASAGKDGEIMLWNLA--AKKAMYTLSA-----QDEVFSL 243
Query: 371 AFEFP---WLVSAAGDG-KLSLIDVRKLLRSGRP 400
AF P WL +A G K+ +D + L+ RP
Sbjct: 244 AFS-PNRYWLAAATATGIKVFSLDPQYLVDDLRP 276
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 88/183 (48%), Gaps = 20/183 (10%)
Query: 229 TQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA-- 283
++F +EH+ ++++++ T+ SGS D+ ++VWD A L R H+ V +A
Sbjct: 119 SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAAS 178
Query: 284 PHDTTVASTSGSD--VYIWDTNSGCLLTVVNGAHVGN-TKSLA-RSHTGDFLFTGGEDGA 339
PH +V + D + +WDT + + + G SLA + G E+G
Sbjct: 179 PHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238
Query: 340 IHMYEIINDCTEANVLLVATWIPHTGPVNSLAF---EFPWLVSAAGDGKLSLID--VRKL 394
+ + + T++ ++++ + H+ V L F P+L S + D L+++D + +L
Sbjct: 239 VSLVD-----TKSTSCVLSSAV-HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL 292
Query: 395 LRS 397
RS
Sbjct: 293 FRS 295
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 54/267 (20%), Positives = 102/267 (38%), Gaps = 47/267 (17%)
Query: 127 DDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT 186
DD+ + + GH+ V + A ++ +D +R+W + G +
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD 109
Query: 187 IRAVAADKK--LLVAGGTDGFIHCW-----------------RAVEVLPH--------LF 219
+ +V DKK ++++G D I W V V+P+
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 220 DISGSEKQNTQFRLWE---------HEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK 268
+G++K + L + H I +L D T I S D + +W+ A K
Sbjct: 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
Query: 269 CLKVLRHSDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTK------ 320
+ L D V+ LA P+ +A+ + + + ++ + L+ + G +
Sbjct: 230 AMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHA 289
Query: 321 -SLARSHTGDFLFTGGEDGAIHMYEII 346
SLA S G LF G D I +++++
Sbjct: 290 VSLAWSADGQTLFAGYTDNVIRVWQVM 316
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 79/214 (36%), Gaps = 64/214 (29%)
Query: 242 SLALDLTRIYSGSWDMTVRVWDRAL-------------------------------LKCL 270
+L D S SWD T+R+WD A K +
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 271 KV-----------LRHSDWVYGL-------APHDTTVASTSGSD--VYIWDTNSGCLLTV 310
KV L H+DWV + A D+ ++G+D V W+ N +
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 311 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL 370
G H N +L S G + + G+DG I ++ + +A L A V SL
Sbjct: 192 FIG-HNSNINTLTASPDGTLIASAGKDGEIMLWNLA--AKKAMYTLSA-----QDEVFSL 243
Query: 371 AFEFP---WLVSAAGDG-KLSLIDVRKLLRSGRP 400
AF P WL +A G K+ +D + L+ RP
Sbjct: 244 AFS-PNRYWLAAATATGIKVFSLDPQYLVDDLRP 276
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 100/266 (37%), Gaps = 47/266 (17%)
Query: 127 DDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT 186
DD+ + + GH+ V + A ++ +D +R+W + G +
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD 109
Query: 187 IRAVAADKK--LLVAGGTDGFIHCW-----------------RAVEVLPH--------LF 219
+ +V DKK +++G D I W V V+P+
Sbjct: 110 VXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 220 DISGSEKQNTQFRLWE---------HEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK 268
+G++K + L + H I +L D T I S D + +W+ A K
Sbjct: 170 ISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKK 229
Query: 269 CLKVLRHSDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTK------ 320
L D V+ LA P+ +A+ + + + ++ + L+ + G +K
Sbjct: 230 AXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 289
Query: 321 -SLARSHTGDFLFTGGEDGAIHMYEI 345
SLA S G LF G D I ++++
Sbjct: 290 VSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 79/214 (36%), Gaps = 64/214 (29%)
Query: 242 SLALDLTRIYSGSWDMTVRVWDRAL-------------------------------LKCL 270
+L D S SWD T+R+WD A K +
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTI 131
Query: 271 KV-----------LRHSDWVYGL-------APHDTTVASTSGSD--VYIWDTNSGCLLTV 310
KV L H+DWV + A D+ ++G+D V W+ N +
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEAD 191
Query: 311 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL 370
G H N +L S G + + G+DG I ++ + +A L A V SL
Sbjct: 192 FIG-HNSNINTLTASPDGTLIASAGKDGEIXLWNLA--AKKAXYTLSA-----QDEVFSL 243
Query: 371 AFEFP---WLVSAAGDG-KLSLIDVRKLLRSGRP 400
AF P WL +A G K+ +D + L+ RP
Sbjct: 244 AFS-PNRYWLAAATATGIKVFSLDPQYLVDDLRP 276
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 108/263 (41%), Gaps = 52/263 (19%)
Query: 129 KSWK---ELIDV---LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS--S 180
K WK E +D+ L GH V++V + + + +S D+ +R+W LE+G I S +
Sbjct: 61 KVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA 120
Query: 181 KPLGCTIRAVAADKKLLVAG--------------------------------GTDGFIHC 208
P+ A + D + L G DG
Sbjct: 121 GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLA 180
Query: 209 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL 266
A++ + ++FDI+ + +T L H PI SL D + + S D ++++D
Sbjct: 181 SGAIDGIINIFDIATGKLLHT---LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH 237
Query: 267 LKCLKVLR-HSDWVYGLA--PHDTTV-ASTSGSDVYIWDTNS-GCLLTVVNGAHVGNTKS 321
L H+ WV +A P DT +S+S V +WD + C+ T + H
Sbjct: 238 ANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD--HQDQVWG 295
Query: 322 LARSHTGDFLFTGGEDGAIHMYE 344
+ + G + + G+D IH+Y+
Sbjct: 296 VKYNGNGSKIVSVGDDQEIHIYD 318
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 128/291 (43%), Gaps = 46/291 (15%)
Query: 187 IRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA 244
IR+VA LL AG D + W E F++ + + HE + +A
Sbjct: 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEM------DLLAIIEGHENEVKGVA 114
Query: 245 L--DLTRIYSGSWDMTVRVWDR----ALLKCLKVLR-HSDWVYGLA--PHDTTVASTSGS 295
D + + S D +V +W+ +C+ VL+ HS V + P + +AS+S
Sbjct: 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD 174
Query: 296 D-VYIW---DTNSGCLLTVVNGAHVGNTKSLARSHT-GDF-LFTGGEDGAIHMYEIINDC 349
D V IW D + C+ V+NG H G S T G F L +G +D + +++ + D
Sbjct: 175 DTVRIWKDYDDDWECV-AVLNG-HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD 232
Query: 350 TEANVLLVATWI---PHTGPVNSLAFEFPWLVSAAG-DGKLSLIDVRKLLRSGRPTSGKR 405
+ V I H V ++A+ F L+++ G DG L++ +
Sbjct: 233 EDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVY--------------EE 278
Query: 406 VSRVIEVEPPQRMLHG-FECNLLS-VDIGADRIVC-GGEEGIVRIWNFSQA 453
V +V + + HG +E N++ +++ I+ GG++GIV W+ +A
Sbjct: 279 VDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEKA 329
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMW 169
E I VL H++ V V S LL +S YD VR+W
Sbjct: 144 ECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 99/257 (38%), Gaps = 46/257 (17%)
Query: 137 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKL 196
+ +G + + L + ++ F S + +WH++ AD+K
Sbjct: 982 IAFGDENGAIEILELVNNRI-FQSRFQHKKTVWHIQ-----------------FTADEKT 1023
Query: 197 LVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD 256
L++ D I W L + G ++ FRL L +R+ S S+D
Sbjct: 1024 LISSSDDAEIQVWNWQ--LDKCIFLRGHQETVKDFRL-----------LKNSRLLSWSFD 1070
Query: 257 MTVRVWDRALLKCLK--VLRHSDWVYGLAPHDTTVASTSGSD--VYIWDTNSGCLLTVVN 312
TV+VW+ K V + HD T S++ +D IW + L +
Sbjct: 1071 GTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELR 1130
Query: 313 GAHVGNTKSLARSHTGDFLFTGGEDGAIHMY-----EIINDCTEANVLLVATWIPHTGPV 367
G H G + A S L TG ++G I ++ E+++ C + AT H G V
Sbjct: 1131 G-HNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAAT---HGGWV 1186
Query: 368 NSLAF--EFPWLVSAAG 382
L F + L+SA G
Sbjct: 1187 TDLCFSPDGKMLISAGG 1203
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Query: 250 IYSGSWDMTVRVWD-RAL-LKCLKVLRHSDWVYGL--APHDTTVASTSGSD--VYIWD 301
+ +GS D TV +WD R L LK H D ++ + +PH+ T+ ++SG+D +++WD
Sbjct: 295 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 6/56 (10%)
Query: 252 SGSWDMTVRVWD-RAL-LKCLKVLRHSDWVYGL--APHDTTVASTSGSD--VYIWD 301
+GS D TV +WD R L LK H D ++ + +PH+ T+ ++SG+D +++WD
Sbjct: 295 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 6/56 (10%)
Query: 252 SGSWDMTVRVWD-RAL-LKCLKVLRHSDWVYGL--APHDTTVASTSGSD--VYIWD 301
+GS D TV +WD R L LK H D ++ + +PH+ T+ ++SG+D +++WD
Sbjct: 299 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 61/152 (40%), Gaps = 31/152 (20%)
Query: 221 ISGSEKQNTQFRLWE-------------HEGPITSLAL--DLTRIYSGSWDMTVRVWDRA 265
ISGS +T RLW+ HEG I S+ D R +GS D T R++D
Sbjct: 222 ISGS--CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR 279
Query: 266 LLKCLKVL-RHSDWVYGLAPHDTTVAST----------SGSDVYIWDTNSGCL---LTVV 311
L+V R D P T+VA + S D Y+WDT + L +
Sbjct: 280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL 339
Query: 312 NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY 343
+H G L S G L TG D + ++
Sbjct: 340 QNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 26/142 (18%)
Query: 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA----------SSKPLG 184
+ +GH + +V + T D R++ + G + + P+
Sbjct: 242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIV 301
Query: 185 CTIRAVAADKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLWEHEGPITS 242
++ A + +LL AG ++G + W + E++ +L + S HEG I+
Sbjct: 302 TSV-AFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNS-----------HEGRISC 349
Query: 243 LAL--DLTRIYSGSWDMTVRVW 262
L L D + + +GSWD +++W
Sbjct: 350 LGLSSDGSALCTGSWDKNLKIW 371
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 19/136 (13%)
Query: 133 ELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA----SSKPLGCTIR 188
+ + H V +V S + D+ R++ L +A S G +
Sbjct: 231 QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSV 290
Query: 189 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D 246
+ +LL AG D I+ W +VL K + L+ HE +++L + D
Sbjct: 291 DFSLSGRLLFAGYNDYTINVW---DVL----------KGSRVSILFGHENRVSTLRVSPD 337
Query: 247 LTRIYSGSWDMTVRVW 262
T SGSWD T+RVW
Sbjct: 338 GTAFCSGSWDHTLRVW 353
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 59/302 (19%), Positives = 116/302 (38%), Gaps = 72/302 (23%)
Query: 236 HEGPITSLALDLTRIY--SGSWDMTVRVWDRALLKCLKVLRHSDWV----------YGLA 283
H G I S+ +D Y +GS D ++++WD + +C+ + V Y LA
Sbjct: 73 HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLA 132
Query: 284 PHDTTVASTSGSDVYIWDTNSGCL-LTVVNG-------AHVG-NTKSLAR-SHTGDFLFT 333
D + + ++Y + +S LT V+ H G + ++A S G ++
Sbjct: 133 ILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIA 192
Query: 334 GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDV 391
G +DG I Y++ N N V + H ++ + F + + ++++ D L+DV
Sbjct: 193 GHKDGKISKYDVSN-----NYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV 247
Query: 392 RKL----------------------------------LRSGRPTSGKRVSR----VIEVE 413
L + + GK +R + E E
Sbjct: 248 STLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE 307
Query: 414 PPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQA-----FEIERRARALRGIRL 468
+ H N +++ GGE+G +R+ +F ++ +++E+ A A ++
Sbjct: 308 IGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKYDVEKAAEAKEHMQE 367
Query: 469 EN 470
N
Sbjct: 368 AN 369
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 296 DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 345
+VY+W+ +SG + + S+ SH G FL G +G + +Y++
Sbjct: 114 NVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 24/167 (14%)
Query: 192 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-----D 246
+D L +GG D + W A +P +F H + ++A +
Sbjct: 227 SDGLQLASGGNDNVVQIWDARSSIP-------------KFTKTNHNAAVKAVAWCPWQSN 273
Query: 247 LTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGL--APHDTTVASTSG---SDVYIWD 301
L G+ D + W+ A + + V L +PH + ST G +++ IW
Sbjct: 274 LLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWS 333
Query: 302 TNSGCLLTVVN-GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN 347
+S L V+ AH A S G L T D + + + +
Sbjct: 334 YSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 135 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--- 191
I L GH+ V + + L + G D++V++W + ++AVA
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP 269
Query: 192 -ADKKLLVAGGT-DGFIHCWRA 211
L GGT D IH W A
Sbjct: 270 WQSNLLATGGGTMDKQIHFWNA 291
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 250 IYSGSWDMTVRVWD-RAL-LKCLKVLRHSDWVYGL--APHDTTVASTSGSD--VYIWD 301
+ +GS D TV +WD R L LK H D ++ + +PH+ T+ ++SG+D + +WD
Sbjct: 289 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 228 NTQFRLWEHEGPITSL----ALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVY 280
N ++ +H+ P+ ++ A + + + +GSWD T++ WD + VL+ + Y
Sbjct: 118 NQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCY 174
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 18/162 (11%)
Query: 193 DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEK---QNTQFRLWEHEGPITSL--ALDL 247
D L + G DG I + V+ G++ ++ + H G + L + D
Sbjct: 201 DGSLFASTGGDGTIVLYNGVD---------GTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 251
Query: 248 TRIYSGSWDMTVRVWDRALLKCLKVL----RHSDWVYGLAPHDTTVASTSGSDVYIWDTN 303
T+I S S D T+++W+ A LK K + R D G+ + S S + +
Sbjct: 252 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 311
Query: 304 SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 345
+ V H +L+ S G LF+ +G I+ ++I
Sbjct: 312 ELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 353
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 318 NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE 373
N+ +A S+ F+ GG+D +H+Y++ + A+V V T I H + S+AF
Sbjct: 450 NSSCVALSNDKQFVAVGGQDSKVHVYKL----SGASVSEVKT-IVHPAEITSVAFS 500
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 250 IYSGSWDMTVRVWD-RAL-LKCLKVLRHSDWVYGL--APHDTTVASTSGSD--VYIWD 301
+ +GS D TV +WD R L LK H D ++ + +PH+ T+ ++SG+D + +WD
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 250 IYSGSWDMTVRVWD-RAL-LKCLKVLRHSDWVYGL--APHDTTVASTSGSD--VYIWD 301
+ +GS D TV +WD R L LK H D ++ + +PH+ T+ ++SG+D + +WD
Sbjct: 291 LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 127 DDKSWKELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE--DGFSIASSKPLG 184
D++ E + VL HT+ V V S +LL ++ YD V+++ E D A+ +
Sbjct: 135 DEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHE 194
Query: 185 CTIRAVAADK--KLLVAGGTDGFIHCWRAVEVLP 216
T+ ++A D + L + D + WR + LP
Sbjct: 195 STVWSLAFDPSGQRLASCSDDRTVRIWR--QYLP 226
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/211 (18%), Positives = 88/211 (41%), Gaps = 23/211 (10%)
Query: 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS----KPLGCTIRAVAADKK 195
H + + ++ V + + + D V++W+ E+ +++ + + + D
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSW 255
+G D + W + P+ +G E+ + P+ D + + S
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY----PLP----DKPYMITASD 206
Query: 256 DMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSD---VYIWDTNSGCLLTVV 311
D+T+++WD C+ L H V H T SGS+ + IW++++ + +
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Query: 312 NGAHVGNTKS--LARSHTG--DFLFTGGEDG 338
N VG +S +A TG +++ +G ++G
Sbjct: 267 N---VGLERSWCIATHPTGRKNYIASGFDNG 294
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/211 (18%), Positives = 88/211 (41%), Gaps = 23/211 (10%)
Query: 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS----KPLGCTIRAVAADKK 195
H + + ++ V + + + D V++W+ E+ +++ + + + D
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSW 255
+G D + W + P+ +G E+ + P+ D + + S
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY----PLP----DKPYMITASD 206
Query: 256 DMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSD---VYIWDTNSGCLLTVV 311
D+T+++WD C+ L H V H T SGS+ + IW++++ + +
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Query: 312 NGAHVGNTKS--LARSHTG--DFLFTGGEDG 338
N VG +S +A TG +++ +G ++G
Sbjct: 267 N---VGLERSWCIATHPTGRKNYIASGFDNG 294
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 246 DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYG--LAP----HDTTVASTSGSDVYI 299
D S S+D T++VWD L+ V + VY ++P H T G V +
Sbjct: 111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170
Query: 300 WDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF-TGGEDGAIHMYEI 345
D SG ++ G H +++ S D++ T D + ++++
Sbjct: 171 CDLKSGSCSHILQG-HRQEILAVSWSPRYDYILATASADSRVKLWDV 216
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 132 KELIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG 174
+ L+ GHT+ + + L+T G D+ VR W L +G
Sbjct: 173 QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG 215
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 17/119 (14%)
Query: 150 VLASAKLLFTSGYDSIVRMWHLED-----GFSIASSKPLGCTIRAVAADKKLLVAGGTDG 204
+L L G S + +W L + SS P C A++ D K+ + +DG
Sbjct: 105 LLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCSDG 163
Query: 205 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWD 263
I W D+ ++ QF+ ++ D T++++G D TVR WD
Sbjct: 164 NIAVW----------DLH-NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/173 (17%), Positives = 69/173 (39%), Gaps = 16/173 (9%)
Query: 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS----KPLGCTIRAVAADKK 195
H + + ++ V + + + D V++W+ E+ +++ + + + D
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSW 255
+G D + W + P+ +G E+ + P+ D + + S
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY----PLP----DKPYMITASD 206
Query: 256 DMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSD---VYIWDTNS 304
D+T+++WD C+ L H V H T SGS+ + IW++++
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
>pdb|1A5M|C Chain C, K217a Variant Of Klebsiella Aerogenes Urease
pdb|1A5N|C Chain C, K217a Variant Of Klebsiella Aerogenes Urease, Chemically
Rescued By Formate And Nickel
Length = 566
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 182 PLGCTIRAVAADKKLLVAGGTDGFIH 207
P+G +AA+ K++ AGG D IH
Sbjct: 110 PIGAATEVIAAEGKIVTAGGIDTHIH 135
>pdb|1EF2|A Chain A, Crystal Structure Of Manganese-Substituted Klebsiella
Aerogenes Urease
pdb|4EP8|C Chain C, Initial Urease Structure For Radiation Damage Experiment
At 100 K
pdb|4EPB|C Chain C, Final Urease Structure For Radiation Damage Experiment At
100 K
pdb|4EPD|C Chain C, Initial Urease Structure For Radiation Damage Experiment
At 300 K
pdb|4EPE|C Chain C, Final Urease Structure For Radiation Damage Experiment At
300 K
Length = 566
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 182 PLGCTIRAVAADKKLLVAGGTDGFIH 207
P+G +AA+ K++ AGG D IH
Sbjct: 110 PIGAATEVIAAEGKIVTAGGIDTHIH 135
>pdb|1A5K|C Chain C, K217e Variant Of Klebsiella Aerogenes Urease
Length = 566
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 182 PLGCTIRAVAADKKLLVAGGTDGFIH 207
P+G +AA+ K++ AGG D IH
Sbjct: 110 PIGAATEVIAAEGKIVTAGGIDTHIH 135
>pdb|1FWH|C Chain C, Klebsiella Aerogenes Urease, C319y Variant
Length = 567
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 182 PLGCTIRAVAADKKLLVAGGTDGFIH 207
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1FWA|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 7.5
pdb|1FWB|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 6.5
pdb|1FWC|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 8.5
pdb|1FWD|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 9.4
pdb|1FWE|C Chain C, Klebsiella Aerogenes Urease, C319a Variant With
Acetohydroxamic Acid (Aha) Bound
Length = 567
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 182 PLGCTIRAVAADKKLLVAGGTDGFIH 207
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1FWG|C Chain C, Klebsiella Aerogenes Urease, C319s Variant
Length = 567
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 182 PLGCTIRAVAADKKLLVAGGTDGFIH 207
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1FWF|C Chain C, Klebsiella Aerogenes Urease, C319d Variant
Length = 567
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 182 PLGCTIRAVAADKKLLVAGGTDGFIH 207
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1EJT|C Chain C, Crystal Structure Of The H219q Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 182 PLGCTIRAVAADKKLLVAGGTDGFIH 207
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1FWJ|C Chain C, Klebsiella Aerogenes Urease, Native
pdb|1EJX|C Chain C, Crystal Structure Of Wild-Type Klebsiella Aerogenes Urease
At 100k
pdb|1EJW|C Chain C, Crystal Structure Of Wild-type Klebsiella Aerogenes Urease
At 298k
pdb|2KAU|C Chain C, The Crystal Structure Of Urease From Klebsiella Aerogenes
At 2.2 Angstroms Resolution
Length = 567
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 182 PLGCTIRAVAADKKLLVAGGTDGFIH 207
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1EJV|C Chain C, Crystal Structure Of The H320q Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 182 PLGCTIRAVAADKKLLVAGGTDGFIH 207
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1EJR|C Chain C, Crystal Structure Of The D221a Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 182 PLGCTIRAVAADKKLLVAGGTDGFIH 207
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 31/173 (17%), Positives = 69/173 (39%), Gaps = 16/173 (9%)
Query: 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS----KPLGCTIRAVAADKK 195
H + + ++ V + + + D V++W+ E+ +++ + + + D
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSW 255
+G D + W + P+ +G E+ + P+ D + + S
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY----PLP----DKPYMITASD 206
Query: 256 DMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSD---VYIWDTNS 304
D+T+++WD C+ L H V H T SGS+ + IW++++
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
>pdb|1KRA|C Chain C, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
Length = 567
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 182 PLGCTIRAVAADKKLLVAGGTDGFIH 207
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1KRB|C Chain C, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
Length = 567
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 182 PLGCTIRAVAADKKLLVAGGTDGFIH 207
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1EJU|C Chain C, Crystal Structure Of The H320n Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 182 PLGCTIRAVAADKKLLVAGGTDGFIH 207
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1EJS|C Chain C, Crystal Structure Of The H219n Variant Of Klebsiella
Aerogenes Urease
Length = 567
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 182 PLGCTIRAVAADKKLLVAGGTDGFIH 207
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1KRC|C Chain C, Crystal Structure Of Klebsiella Aerogenes Urease, Its
Apoenzyme And Two Active Site Mutants
Length = 567
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 182 PLGCTIRAVAADKKLLVAGGTDGFIH 207
P+G +AA+ K++ AGG D IH
Sbjct: 111 PIGAATEVIAAEGKIVTAGGIDTHIH 136
>pdb|1A5O|C Chain C, K217c Variant Of Klebsiella Aerogenes Urease, Chemically
Rescued By Formate And Nickel
pdb|1A5L|C Chain C, K217c Variant Of Klebsiella Aerogenes Urease
Length = 566
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 182 PLGCTIRAVAADKKLLVAGGTDGFIH 207
P+G +AA+ K++ AGG D IH
Sbjct: 110 PIGAATEVIAAEGKIVTAGGIDTHIH 135
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 98/259 (37%), Gaps = 64/259 (24%)
Query: 25 SQIESELNNLNFEIEATKSTLESKQLPCNDVLSNLHRSTITDLPPALISEILNCLDPKEL 84
S ++SEL+ L E E K+ + + C D A +S+I N +DP
Sbjct: 9 SLLQSELDQLRQEAEQLKNQIRDARKACAD---------------ATLSQITNNIDP--- 50
Query: 85 GIVSCVSPILHRLASDHHAWKEFYCERWG----LPIASAPLGAGFSDDKSWKELIDVLYG 140
V + R H A + Y WG L ++++ G D + +
Sbjct: 51 --VGRIQMRTRRTLRGHLA--KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL 106
Query: 141 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE--DGFSIASSKPLGCTIRAVAADKKLLV 198
+ V+T S + G D+I +++L+ +G ++ S+ L
Sbjct: 107 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG-NVRVSREL--------------- 150
Query: 199 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE------------HEGPITSLAL- 245
G G++ C R ++ + SG +T LW+ H G + SL+L
Sbjct: 151 -AGHTGYLSCCRFLDD-NQIVTSSG----DTTCALWDIETGQQTTTFTGHTGDVMSLSLA 204
Query: 246 -DLTRIYSGSWDMTVRVWD 263
D SG+ D + ++WD
Sbjct: 205 PDTRLFVSGACDASAKLWD 223
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL--EDGFSIASSKPLGCTIRAVAADK--K 195
GH + + + T D+ R++ L + S + C I +V+ K +
Sbjct: 235 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 294
Query: 196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG 253
LL+AG D + W A+ K + L H+ ++ L + D + +G
Sbjct: 295 LLLAGYDDFNCNVWDAL-------------KADRAGVLAGHDNRVSCLGVTDDGMAVATG 341
Query: 254 SWDMTVRVWD 263
SWD +++W+
Sbjct: 342 SWDSFLKIWN 351
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL--EDGFSIASSKPLGCTIRAVAADK--K 195
GH + + + T D+ R++ L + S + C I +V+ K +
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG 253
LL+AG D + W A+ K + L H+ ++ L + D + +G
Sbjct: 284 LLLAGYDDFNCNVWDAL-------------KADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 254 SWDMTVRVWD 263
SWD +++W+
Sbjct: 331 SWDSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL--EDGFSIASSKPLGCTIRAVAADK--K 195
GH + + + T D+ R++ L + S + C I +V+ K +
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG 253
LL+AG D + W A+ K + L H+ ++ L + D + +G
Sbjct: 284 LLLAGYDDFNCNVWDAL-------------KADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 254 SWDMTVRVWD 263
SWD +++W+
Sbjct: 331 SWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL--EDGFSIASSKPLGCTIRAVAADK--K 195
GH + + + T D+ R++ L + S + C I +V+ K +
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG 253
LL+AG D + W A+ K + L H+ ++ L + D + +G
Sbjct: 284 LLLAGYDDFNCNVWDAL-------------KADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 254 SWDMTVRVWD 263
SWD +++W+
Sbjct: 331 SWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 140 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL--EDGFSIASSKPLGCTIRAVAADK--K 195
GH + + + T D+ R++ L + S + C I +V+ K +
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 196 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG 253
LL+AG D + W A+ K + L H+ ++ L + D + +G
Sbjct: 284 LLLAGYDDFNCNVWDAL-------------KADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 254 SWDMTVRVWD 263
SWD +++W+
Sbjct: 331 SWDSFLKIWN 340
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%)
Query: 263 DRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSD--VYIWDTNSGCLLTVVNGAHVGNTK 320
DR L C+ RH P+ V +T G D + IWD G + + AH
Sbjct: 235 DRVPLHCVD--RH--------PNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMW 284
Query: 321 SLA-RSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL 356
+ + LFT EDG++ ++ D E + L
Sbjct: 285 EVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEKSSLF 321
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,809,664
Number of Sequences: 62578
Number of extensions: 660966
Number of successful extensions: 2001
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1558
Number of HSP's gapped (non-prelim): 292
length of query: 520
length of database: 14,973,337
effective HSP length: 103
effective length of query: 417
effective length of database: 8,527,803
effective search space: 3556093851
effective search space used: 3556093851
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)